Citrus Sinensis ID: 046427
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 595 | 2.2.26 [Sep-21-2011] | |||||||
| O04130 | 624 | D-3-phosphoglycerate dehy | no | no | 0.912 | 0.870 | 0.775 | 0.0 | |
| Q58424 | 524 | D-3-phosphoglycerate dehy | yes | no | 0.865 | 0.982 | 0.419 | 1e-110 | |
| O27051 | 525 | D-3-phosphoglycerate dehy | yes | no | 0.877 | 0.994 | 0.401 | 1e-103 | |
| O29445 | 527 | D-3-phosphoglycerate dehy | yes | no | 0.875 | 0.988 | 0.400 | 1e-101 | |
| P73821 | 554 | D-3-phosphoglycerate dehy | N/A | no | 0.894 | 0.960 | 0.397 | 3e-99 | |
| P35136 | 525 | D-3-phosphoglycerate dehy | yes | no | 0.852 | 0.965 | 0.375 | 2e-96 | |
| O08651 | 533 | D-3-phosphoglycerate dehy | yes | no | 0.623 | 0.696 | 0.460 | 1e-81 | |
| Q60HD7 | 533 | D-3-phosphoglycerate dehy | N/A | no | 0.640 | 0.714 | 0.450 | 2e-81 | |
| Q61753 | 533 | D-3-phosphoglycerate dehy | yes | no | 0.623 | 0.696 | 0.454 | 3e-81 | |
| O43175 | 533 | D-3-phosphoglycerate dehy | yes | no | 0.640 | 0.714 | 0.447 | 3e-81 |
| >sp|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/543 (77%), Positives = 485/543 (89%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFES 112
KP +LV EKLGEAG+++L+ F +VDCSY+LSPE+L K++ DALIVRSGTKVTREVFE+
Sbjct: 82 KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEA 141
Query: 113 SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQAD 172
+ GRLKVVGRAGVGIDNVDL AATEHGCLVVNAPTANT+AAAEHGIALL +MARN+AQAD
Sbjct: 142 AKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQAD 201
Query: 173 ASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARA 232
AS+KAGKW+R+KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM VI+HDPYA ADRARA
Sbjct: 202 ASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISHDPYAPADRARA 261
Query: 233 TGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEAL 292
GV LVSF++AISTADF+SLHMPLTPAT K+FNDE F KMKKGVR++NVARGGV+DE+AL
Sbjct: 262 LGVDLVSFDQAISTADFVSLHMPLTPATKKVFNDETFSKMKKGVRLINVARGGVIDEDAL 321
Query: 293 VRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVI 352
VRALD+GI++QAALDVF EEPP+KDS+L+ HENVTVTPHLGAST EAQEGVAIEIAEAV
Sbjct: 322 VRALDAGIVAQAALDVFCEEPPSKDSRLIQHENVTVTPHLGASTKEAQEGVAIEIAEAVA 381
Query: 353 GALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASAR 412
GALKGEL+ATAVNAPMV EV+SEL P++ LAEKLG LAVQL +GG GV+S++V Y SAR
Sbjct: 382 GALKGELSATAVNAPMVAPEVLSELTPYIVLAEKLGRLAVQLASGGKGVQSIRVVYRSAR 441
Query: 413 GPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEF 472
DDLDTRLLRAMITKGIIEPIS +VNLVNADFIAKQ+GLR++EER+V+D SPE P++
Sbjct: 442 DRDDLDTRLLRAMITKGIIEPISDSYVNLVNADFIAKQKGLRISEERMVVDSSPEYPVDS 501
Query: 473 IQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQP 532
IQVQI NVES F A+SD GDI +EG+VK G PHLT VGSFGVDVSLEG++ILCRQVDQP
Sbjct: 502 IQVQILNVESNFAGAVSDAGDISIEGKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQP 561
Query: 533 GIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVF 592
G+IG+VG++LG+ NVNVNFMSVGR +KQA+M IGVDEEP + L++IG AIEEFVF
Sbjct: 562 GMIGQVGNILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVF 621
Query: 593 LKL 595
LKL
Sbjct: 622 LKL 624
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 9EC: 5 |
| >sp|Q58424|SERA_METJA D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 229/546 (41%), Positives = 322/546 (58%), Gaps = 31/546 (5%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAG 115
+LV + L E + +L+ V+ + L+ EEL KI D L+VRSGTKVTR+V E A
Sbjct: 4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEK-AE 62
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
+LKV+GRAGVG+DN+D+ AATE G +VVNAP A++I+ AE + L+ A ARNI QA AS+
Sbjct: 63 KLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASL 122
Query: 176 KAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGV 235
K G+W R ++ G+ L GKTL V+G G++G +V +RAK GMN+I +DPY + A + GV
Sbjct: 123 KRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPYIPKEVAESMGV 182
Query: 236 GLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
LV E ADFI+LH+PLTP T + E MKK IVN ARGG++DE+AL
Sbjct: 183 ELVDDINELCKRADFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKALYE 242
Query: 295 ALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGA 354
AL G I AALDVF EEPP KD+ L+ +NV TPH GAST EAQ+ +AE +
Sbjct: 243 ALKEGKIRAAALDVFEEEPP-KDNPLLTLDNVIGTPHQGASTEEAQKAAGTIVAEQIKKV 301
Query: 355 LKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGP 414
L+GELA VN P +P E + +L P++ LAE LG + +Q++ G V V++ Y+
Sbjct: 302 LRGELAENVVNMPNIPQEKLGKLKPYMLLAEMLGNIVMQVLDG--SVNRVELIYSGELAK 359
Query: 415 DDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQ 474
+ D L++ KG++ PI +NLVNA IAK R + V E
Sbjct: 360 EKTD--LIKRAFLKGLLSPILLAGINLVNAPIIAKNRNINVVES---------------- 401
Query: 475 VQIANVESKFGSAI-----SDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQV 529
+ E K+G+AI SD + G + + KP + +V + V EG + + + +
Sbjct: 402 ---STSEEKYGNAIKITAESDKKKFSIVGAIINNKPVILEVDGYEVSFIPEGVLAIIKHI 458
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEE 589
D+PG IG+V LGD +N+ M VGR P ++VM + +D EV++KI E P I++
Sbjct: 459 DRPGTIGRVCITLGDYGINIASMQVGRKEPGGESVMLLNLDHTVPEEVIEKIKEIPNIKD 518
Query: 590 FVFLKL 595
+ L
Sbjct: 519 VAVINL 524
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O27051|SERA_METTH D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 219/546 (40%), Positives = 331/546 (60%), Gaps = 24/546 (4%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFE 111
S+ VL+A+ + E G+ L+ A V + ++PEEL I DA++VRS TKVTREV E
Sbjct: 2 SRMKVLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIE 61
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+ A RLK++ RAGVG+DNVD+ AAT+ G +V+NAP + +I AEH I L+ A+AR IA A
Sbjct: 62 A-APRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIA 120
Query: 172 DASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRAR 231
D SVK GKW++N+++G+ L GKTL ++G G++G++V R K GM+++ +DPY + A
Sbjct: 121 DRSVKEGKWEKNRFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPYISKEAAE 180
Query: 232 ATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
GV + E + +D +++H+PLTP T + +++ F MK IVN ARGG++DE+A
Sbjct: 181 EMGVTVTDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGIIDEDA 240
Query: 292 LVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAV 351
L RAL G I+ AALDVF EEPP + S L+ ENV +TPH+GAST+EAQ AI +A +
Sbjct: 241 LYRALKDGEIAGAALDVFEEEPP-EGSPLLELENVVLTPHIGASTSEAQRDAAIIVANEI 299
Query: 352 IGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASA 411
+G +N P++ +E L P++ LAEK+G + Q + G ++ + V+Y
Sbjct: 300 KTVFQGGAPRNVLNMPVMDSETYKSLKPYIELAEKMGAIIAQALPG--NIEKLDVTYCGE 357
Query: 412 RGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTE-ERIVLDGSPENPL 470
D L R M+ + I+ PI + VNL+NA IAK+RG+ VTE R DG
Sbjct: 358 LAEMQFDI-LTRTML-QAILNPILTEPVNLINAPSIAKKRGIMVTEARRSESDG------ 409
Query: 471 EFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGSFGVDVSLEGSIILCRQV 529
+ + IA E SD G VE +K+ P + + + VDV EG++I+ R
Sbjct: 410 -YRSIIIATAE-------SDRGGFSVEATHIKE--PTIIGINGYRVDVKPEGTMIIARYR 459
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEE 589
D PG IG +G+ LG + +N+ M VGR +AVM + VD+ EV++++ + +++
Sbjct: 460 DLPGTIGAIGTKLGQHGINIATMQVGRKEIGGEAVMVLKVDQSVPAEVIEEVKKLDNVDD 519
Query: 590 FVFLKL 595
V +++
Sbjct: 520 AVAIEI 525
|
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 218/544 (40%), Positives = 331/544 (60%), Gaps = 23/544 (4%)
Query: 56 VLVAEKLGEAGLDVL-KNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA 114
VLVAE + E +D + KN V+ +S EEL ++ +A++VRS TKV EV ++ A
Sbjct: 3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQA-A 61
Query: 115 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS 174
LK++GRAGVG+DN+D++AAT+ G +VVNAP NTI+ AEH IAL+ A AR I QAD S
Sbjct: 62 KNLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQADRS 121
Query: 175 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
VK GKW+R K++G+ L GKT V+G G+VG EVA+R K L MNV+A+DP+ +RA G
Sbjct: 122 VKEGKWERKKFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPFVSKERAEQIG 181
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
V LV F+ ++++D I++H+P T T + F KMK GV +VN ARGG+VDE AL
Sbjct: 182 VKLVDFDTLLASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIVDEAALYE 241
Query: 295 ALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGA 354
A+ +G ++ AALDV+ +EPP+ D+ L+ +NV TPH+ AST EAQ V + IAE ++
Sbjct: 242 AIKAGKVAAAALDVYEKEPPSPDNPLLKLDNVVTTPHIAASTREAQLNVGMIIAEDIVNM 301
Query: 355 LKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLA-VQLVAGGSGVKSVKVSYASARG 413
KG AVN P + + PF+TLAEK+G +A V+L G ++ VKV+ +
Sbjct: 302 AKGLPVRNAVNLPSIEPSDFEFMMPFLTLAEKMGKIASVRL---GGAIRKVKVTCSGKLA 358
Query: 414 PDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFI 473
+T + + KG+ EPI S +NLV+A +A +RG+ + E ++ S E+ +
Sbjct: 359 TK--NTEFVTRALLKGLFEPILSNEINLVSAKPVAVERGITIEESKV---ESVEHYESLL 413
Query: 474 QVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPG 533
+V + S+ ++ + G + + K+ + V+ +G I+ D+PG
Sbjct: 414 EVWVE----------SNGKEMYLAGTCFGNEYRILKIDVYNVNFVPKGHYIISLHEDKPG 463
Query: 534 IIGKVGSLLGDNNVNVNFMSVGRIA--PQKQAVMTIGVDEEPSREVLKKIGETPAIEEFV 591
+IG+VG+L G NN+N+ M VGR P +M + VD+ P+ EVL+++ + I +
Sbjct: 464 VIGRVGTLFGRNNINIAGMIVGRSGDKPGGIQLMLLLVDDPPTPEVLEEMTKLDGIIDAT 523
Query: 592 FLKL 595
+++L
Sbjct: 524 YVEL 527
|
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|P73821|SERA_SYNY3 D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (931), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 219/551 (39%), Positives = 322/551 (58%), Gaps = 19/551 (3%)
Query: 45 VLATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTK 104
+ +F +K VLV++ + + G+D+LK A VD LS E+ + DA+++RS TK
Sbjct: 23 IFRSFTMAK--VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATK 80
Query: 105 VTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAM 164
VT ++ ++ + +LK++GRAGVG+DN+D+ AAT G +VVN+P NTIAAAEH +A++ A+
Sbjct: 81 VTEKIIQAGS-QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMAL 139
Query: 165 ARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY 224
AR+I A+ SVK KW+R +++G + KTL V+G GK+G+ VA AK +GM ++A+DP+
Sbjct: 140 ARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPF 199
Query: 225 AQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284
+RA G LV + S ADFI+LH+P TP T+ + N E KMK RI+N +RG
Sbjct: 200 ISQERADQIGCTLVDLDLLFSEADFITLHIPKTPETANLINAETLAKMKPTARIINCSRG 259
Query: 285 GVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVA 344
G++DEEALV A+++ I AALDVF +EP +S+L NV +TPHLGAST EAQ VA
Sbjct: 260 GIIDEEALVTAIETAQIGGAALDVFAQEPLG-ESRLREFSNVILTPHLGASTEEAQVNVA 318
Query: 345 IEIAEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSV 404
+++AE + L G A +AVN P + +V+ +L P++ LAE LG L QL AGG + +
Sbjct: 319 VDVAEQIRDVLLGLPARSAVNIPGLTPDVMEKLRPYLKLAETLGTLVGQL-AGGR-IDRL 376
Query: 405 KVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDG 464
V L+ A I KG++ VN VNA AK+RG+RV E +
Sbjct: 377 TVCLQGDLAEYTNSQPLVVAAI-KGLLSQALRERVNYVNAAIEAKERGIRVIETKDASVR 435
Query: 465 SPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSII 524
L S G+ +S+ G+IR+ T V F ++V ++
Sbjct: 436 DYSGSLHLKATGTMGEHSATGALLSN-GEIRI-----------TDVDEFPINVPPNNYML 483
Query: 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGET 584
D PGIIGK+GSLLG NVN+ M VGR + A+M + +D+ +L +I +
Sbjct: 484 FTLHRDMPGIIGKIGSLLGSFNVNIASMQVGRKIVRGDAIMALSLDDPLPDGLLSEITKV 543
Query: 585 PAIEEFVFLKL 595
I + +KL
Sbjct: 544 AGIRDAYTVKL 554
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain 168) GN=serA PE=3 SV=3 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 202/538 (37%), Positives = 310/538 (57%), Gaps = 31/538 (5%)
Query: 56 VLVAEKLGEAGLDVL--KNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESS 113
VLV++K+ GL L +F + N++ E ++ DAL+VRS TKVT ++F
Sbjct: 4 VLVSDKMSNDGLQPLIESDFIEI-VQKNVADAE--DELHTFDALLVRSATKVTEDLFNKM 60
Query: 114 AGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADA 173
LK+VGRAGVG+DN+D+ AT+HG +V+NAP NTI+ AEH A+++++ R+I QA+
Sbjct: 61 TS-LKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANI 119
Query: 174 SVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARAT 233
SVK+ +W R YVG L GKTL ++G G++G+E+A+RA+ GM V DP+ +RA+
Sbjct: 120 SVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPFLTEERAKKI 179
Query: 234 GVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293
GV +FEE + +AD I++H PLT T + N E K KKGVR++N ARGG++DE AL+
Sbjct: 180 GVNSRTFEEVLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAALL 239
Query: 294 RALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIG 353
AL++G ++ AALDVF EPP D+KLV H V TPHLGAST EAQ VA +++E V+
Sbjct: 240 EALENGHVAGAALDVFEVEPPV-DNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQ 298
Query: 354 ALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARG 413
KG +A+N P + + +++ P+ +A K+G L Q + V+ V + Y
Sbjct: 299 FAKGLPVMSAINLPAMTKDEFAKIKPYHQIAGKIGSLVSQCMK--EPVQDVAIQYEGTIA 356
Query: 414 PDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFI 473
L+T + + G ++P VN VNA +AK+RG+ +E+ + S I
Sbjct: 357 K--LETSFITKALLSGFLKPRVDSTVNEVNAGGVAKERGISFSEK---ISSSESGYDNCI 411
Query: 474 QVQIANVESKFGSAISDIGDIRVEGRVKDGKPH----LTKVGSFGVDVSLEGSIILCRQV 529
V++ S F + I PH + ++ F +D G ++ +
Sbjct: 412 SVKVTGDRSTFTVTATYI-------------PHFGERIVEINGFNIDFYPTGHLVYIQHQ 458
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAI 587
D G+IG+VG +LGDN++N+ M VGR +A+M + D +++K++ P I
Sbjct: 459 DTTGVIGRVGRILGDNDINIATMQVGRKEKGGEAIMMLSFDRHLEDKIVKELTNVPDI 516
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 305 bits (780), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 173/376 (46%), Positives = 225/376 (59%), Gaps = 5/376 (1%)
Query: 81 NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGC 140
NLS EEL ++ C+ LIVRS TKVT +V ++A +L+VVGRAG G+DNVDL AAT G
Sbjct: 35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGV 93
Query: 141 LVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF 200
LV+N P N+++AAE +L +AR I QA AS+K GKW R K++G L GKTL ++G
Sbjct: 94 LVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGL 153
Query: 201 GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPAT 260
G++G EVA R + GM + +DP + A + GV + EE DFI++H PL P+T
Sbjct: 154 GRIGREVAARMQAFGMKTVGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPST 213
Query: 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKL 320
+ + ND F + KKGVR+VN ARGG+VDE AL+RAL SG + AALDVFTEEPP +D L
Sbjct: 214 TGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP-RDRAL 272
Query: 321 VLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPF 380
V HENV PHLGAST EAQ EIA + +KG+ VNA + + P+
Sbjct: 273 VDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALTSAFSPHTKPW 332
Query: 381 VTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVN 440
+ LAE LG L G V S + + T L A+I + E VN
Sbjct: 333 IGLAEALGTLMHAWAGSPKGTIQVVTQGTSLK---NAGTCLSPAVIVGLLREASKQADVN 389
Query: 441 LVNADFIAKQRGLRVT 456
LVNA + K+ GL VT
Sbjct: 390 LVNAKLLVKEAGLNVT 405
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4 | Back alignment and function description |
|---|
Score = 303 bits (777), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 176/391 (45%), Positives = 230/391 (58%), Gaps = 10/391 (2%)
Query: 81 NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGC 140
NLS EEL ++ C+ LIVRS TKVT +V ++A +L+VVGRAG G+DNVDL AAT G
Sbjct: 35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGV 93
Query: 141 LVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF 200
LV+N P N+++AAE ++ +AR I QA AS+K GKW+R K++G L GKTL ++G
Sbjct: 94 LVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGL 153
Query: 201 GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPAT 260
G++G EVA R + GM I +DP + + + GV + EE DFI++H PL P+T
Sbjct: 154 GRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPST 213
Query: 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKL 320
+ + ND F + KKGVR+VN ARGG+VDE AL+RAL SG + AALDVFTEEPP +D L
Sbjct: 214 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP-RDRAL 272
Query: 321 VLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPF 380
V HENV PHLGAST EAQ EIA + +KG+ A VNA + + P+
Sbjct: 273 VDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLAGVVNAQALTSAFSPHTKPW 332
Query: 381 VTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVN 440
+ LAE LG L G V S + + L A+I + E VN
Sbjct: 333 IGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNC---LSPAVIVGLLKEASKQADVN 389
Query: 441 LVNADFIAKQRGLRVTEERIVLDGSPENPLE 471
LVNA + K+ GL VT SP P E
Sbjct: 390 LVNAKLLVKEAGLDVTTSH-----SPAAPGE 415
|
Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|Q61753|SERA_MOUSE D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 171/376 (45%), Positives = 225/376 (59%), Gaps = 5/376 (1%)
Query: 81 NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGC 140
NLS EEL ++ C+ LIVRS TKVT +V ++A +L+VVGRAG G+DNVDL AAT G
Sbjct: 35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGI 93
Query: 141 LVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF 200
LV+N P N+++AAE ++ +AR I QA AS+K GKW R K++G L GKTL ++G
Sbjct: 94 LVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGL 153
Query: 201 GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPAT 260
G++G EVA R + GM + +DP + A + GV + EE DFI++H PL P+T
Sbjct: 154 GRIGREVATRMQSFGMKTVGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPST 213
Query: 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKL 320
+ + ND F + KKGVR+VN ARGG+VDE AL+RAL SG + AALDVFTEEPP +D L
Sbjct: 214 TGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP-RDRAL 272
Query: 321 VLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPF 380
V HENV PHLGAST EAQ EIA + +KG+ VNA + + P+
Sbjct: 273 VDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALTSAFSPHTKPW 332
Query: 381 VTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVN 440
+ LAE +G L G V S + + T L A+I + E VN
Sbjct: 333 IGLAEAMGTLMHAWAGSPKGTIQVVTQGTSLK---NAGTCLSPAVIVGLLREASKQADVN 389
Query: 441 LVNADFIAKQRGLRVT 456
LVNA + K+ GL VT
Sbjct: 390 LVNAKLLVKEAGLNVT 405
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 175/391 (44%), Positives = 229/391 (58%), Gaps = 10/391 (2%)
Query: 81 NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGC 140
NLS EEL ++ C+ LIVRS TKVT +V ++A +L+VVGRAG G+DNVDL AAT G
Sbjct: 35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGI 93
Query: 141 LVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF 200
LV+N P N+++AAE ++ +AR I QA AS+K GKW+R K++G L GKTL ++G
Sbjct: 94 LVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGL 153
Query: 201 GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPAT 260
G++G EVA R + GM I +DP + + + GV + EE DFI++H PL P+T
Sbjct: 154 GRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPST 213
Query: 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKL 320
+ + ND F + KKGVR+VN ARGG+VDE AL+RAL SG + AALDVFTEEPP +D L
Sbjct: 214 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP-RDRAL 272
Query: 321 VLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPF 380
V HENV PHLGAST EAQ EIA + +KG+ VNA + + P+
Sbjct: 273 VDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALTSAFSPHTKPW 332
Query: 381 VTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVN 440
+ LAE LG L G V S + + L A+I + E VN
Sbjct: 333 IGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNC---LSPAVIVGLLKEASKQADVN 389
Query: 441 LVNADFIAKQRGLRVTEERIVLDGSPENPLE 471
LVNA + K+ GL VT SP P E
Sbjct: 390 LVNAKLLVKEAGLNVTTSH-----SPAAPGE 415
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 595 | ||||||
| 224137644 | 597 | predicted protein [Populus trichocarpa] | 0.993 | 0.989 | 0.839 | 0.0 | |
| 224063477 | 598 | predicted protein [Populus trichocarpa] | 0.991 | 0.986 | 0.830 | 0.0 | |
| 225458719 | 605 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.937 | 0.922 | 0.872 | 0.0 | |
| 449445906 | 599 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.942 | 0.936 | 0.859 | 0.0 | |
| 225428898 | 595 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.922 | 0.922 | 0.872 | 0.0 | |
| 356536156 | 594 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.994 | 0.996 | 0.809 | 0.0 | |
| 255555301 | 596 | d-3-phosphoglycerate dehydrogenase, puta | 0.937 | 0.936 | 0.858 | 0.0 | |
| 255538186 | 598 | d-3-phosphoglycerate dehydrogenase, puta | 1.0 | 0.994 | 0.811 | 0.0 | |
| 211906486 | 602 | phosphoglycerate dehydrogenase [Gossypiu | 0.964 | 0.953 | 0.826 | 0.0 | |
| 356574282 | 595 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.942 | 0.942 | 0.848 | 0.0 |
| >gi|224137644|ref|XP_002327177.1| predicted protein [Populus trichocarpa] gi|222835492|gb|EEE73927.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1008 bits (2607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/598 (83%), Positives = 547/598 (91%), Gaps = 7/598 (1%)
Query: 3 AASSTKKLMLAASPNKPRLSSTL--VPPATIRGPPRR--RKTKRFAVLAT-FITSKPTVL 57
AA+S+ M+ +P KP LS L P T RR R KRF V AT F+ KPTVL
Sbjct: 2 AATSSWNFMV--TPTKPSLSWKLSFFSPLTTVNVTRRQNRTAKRFVVFATVFLDPKPTVL 59
Query: 58 VAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRL 117
VAEKLGEAGL++LK FANVDCSYNL EELCTKISLCDALIVRSGTKVTREVFE S GRL
Sbjct: 60 VAEKLGEAGLELLKTFANVDCSYNLDHEELCTKISLCDALIVRSGTKVTREVFERSGGRL 119
Query: 118 KVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKA 177
KVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS+K+
Sbjct: 120 KVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASIKS 179
Query: 178 GKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL 237
GKWQR+KYVGVSLVGKTLAVMGFGKVG+EVARRAKGLGM+VIAHDPYA ADRARA GV L
Sbjct: 180 GKWQRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL 239
Query: 238 VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALD 297
VSFEEAISTADFISLHMPLTPATSKMFNDE+F +MKKGVRIVNVARGGV+DEEALVRALD
Sbjct: 240 VSFEEAISTADFISLHMPLTPATSKMFNDESFSQMKKGVRIVNVARGGVIDEEALVRALD 299
Query: 298 SGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKG 357
SG ++QAALDVFTEEPP+KDSKLVLHENVTVTPHLGASTTEAQEGVAIE+AEAV+GALKG
Sbjct: 300 SGTVAQAALDVFTEEPPSKDSKLVLHENVTVTPHLGASTTEAQEGVAIEVAEAVVGALKG 359
Query: 358 ELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDL 417
+LAATAVNAPM+PAE++SELAPFVTL+EKLG LAVQLVAGG GV+SVKV+YASARGPDDL
Sbjct: 360 QLAATAVNAPMLPAEILSELAPFVTLSEKLGRLAVQLVAGGRGVQSVKVTYASARGPDDL 419
Query: 418 DTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQI 477
DTRLLRAMITKG+IEPISSVF+NLVNADF AKQRGLR+TEERI+LDGSPENPLEFIQVQI
Sbjct: 420 DTRLLRAMITKGLIEPISSVFINLVNADFSAKQRGLRITEERILLDGSPENPLEFIQVQI 479
Query: 478 ANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGIIGK 537
ANVESKF A+SD G+I+VEGRVKDGKPHLT VGSFGVDVS+EGS+ILCRQVDQPG++G
Sbjct: 480 ANVESKFSIAMSDSGEIKVEGRVKDGKPHLTMVGSFGVDVSMEGSLILCRQVDQPGMVGS 539
Query: 538 VGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595
VGS+LG+ NVNV+FMSVGRIAP+KQAVMTIGVDEEPS+E LK+I E PA+EE VFLKL
Sbjct: 540 VGSILGEENVNVSFMSVGRIAPRKQAVMTIGVDEEPSKEALKRIREIPAVEEIVFLKL 597
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063477|ref|XP_002301163.1| predicted protein [Populus trichocarpa] gi|222842889|gb|EEE80436.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/596 (83%), Positives = 542/596 (90%), Gaps = 6/596 (1%)
Query: 6 STKKLMLAASPNKP---RLSSTLVPPATIRGPPRR--RKTKRFAVLATFITS-KPTVLVA 59
+T L L +P KP + P T RR RK RF V AT + KPTVLVA
Sbjct: 3 TTSSLNLVFTPTKPTSLSWKHSFPSPFTTANCTRRQDRKAYRFVVFATVLADPKPTVLVA 62
Query: 60 EKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKV 119
EKLG+AGL++LK FANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFE S GRLKV
Sbjct: 63 EKLGKAGLELLKTFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFERSGGRLKV 122
Query: 120 VGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGK 179
VGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS+KAGK
Sbjct: 123 VGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASLKAGK 182
Query: 180 WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVS 239
WQR+KYVGVSLVGKTLAV+GFGKVG+EVARRAKGLGM+VIAHDPYA ADRARA GV L++
Sbjct: 183 WQRSKYVGVSLVGKTLAVIGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLLT 242
Query: 240 FEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299
FEEAIS ADFISLHMPLTPATSK+FND+AF +MKKGVRIVNVARGGV+DEEALVRALDSG
Sbjct: 243 FEEAISIADFISLHMPLTPATSKIFNDQAFSRMKKGVRIVNVARGGVIDEEALVRALDSG 302
Query: 300 IISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGEL 359
I++QAALDVFTEEPP KDS+LVLHENVTVTPHLGASTTEAQEGVAIE+AEAVIGALKGEL
Sbjct: 303 IVAQAALDVFTEEPPPKDSRLVLHENVTVTPHLGASTTEAQEGVAIEVAEAVIGALKGEL 362
Query: 360 AATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDT 419
AATAVNAPMV AEV++ELAPFVTL+EKLG LA QLVAGGSGV+SVKV+YASARGPDDLDT
Sbjct: 363 AATAVNAPMVTAEVLTELAPFVTLSEKLGRLAAQLVAGGSGVQSVKVTYASARGPDDLDT 422
Query: 420 RLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIAN 479
RLLRAMITKG+IEPI+SV++NLVNADF AKQRGLR+ EER +LDGSPENPLEFIQVQIAN
Sbjct: 423 RLLRAMITKGLIEPIASVYINLVNADFTAKQRGLRIIEERFLLDGSPENPLEFIQVQIAN 482
Query: 480 VESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGIIGKVG 539
VESKF +AISD G+I+VEGRVKDGKPHLTKVGSFGVDVS+EGS++LCRQVDQPG+IG VG
Sbjct: 483 VESKFATAISDSGEIKVEGRVKDGKPHLTKVGSFGVDVSMEGSLVLCRQVDQPGMIGSVG 542
Query: 540 SLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595
++LG+ NVNVNFMSVGRIAP+KQAVM IGVDEEPS+E LK+IGE PA+EEFVFLKL
Sbjct: 543 NILGEENVNVNFMSVGRIAPRKQAVMIIGVDEEPSKEALKRIGEIPAVEEFVFLKL 598
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458719|ref|XP_002283022.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/559 (87%), Positives = 527/559 (94%), Gaps = 1/559 (0%)
Query: 38 RKTKRFAVLAT-FITSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDA 96
R TK V+ T + +KPTVLVAEKLGEAGL++LK FANVDCSYN+SPEELCTKISLCDA
Sbjct: 47 RTTKSLVVVVTAMMEAKPTVLVAEKLGEAGLELLKGFANVDCSYNMSPEELCTKISLCDA 106
Query: 97 LIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEH 156
LIVRSGTKVTREVFES+ RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEH
Sbjct: 107 LIVRSGTKVTREVFESAGRRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEH 166
Query: 157 GIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM 216
G+ALLTAMARNIAQADASVKAGKW+R+KYVGVSLVGKTLAVMGFGKVG+EVARRAKGLGM
Sbjct: 167 GVALLTAMARNIAQADASVKAGKWERSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM 226
Query: 217 NVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGV 276
+VIAHDPYA ADRARA GV LV+FEEAISTADFISLHMPLTPATSK+ NDE+F +MKKGV
Sbjct: 227 HVIAHDPYAPADRARAIGVNLVTFEEAISTADFISLHMPLTPATSKILNDESFSRMKKGV 286
Query: 277 RIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
RIVNVARGGV+DEEAL+RALDSGI++QAALDVFTEEPP KDSKLV HENVTVTPHLGAST
Sbjct: 287 RIVNVARGGVIDEEALIRALDSGIVAQAALDVFTEEPPPKDSKLVQHENVTVTPHLGAST 346
Query: 337 TEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVA 396
TEAQEGVAIEIAEAV+GALKGELAATAVNAPMVPAEV+S LAPFV LAEKLG LAVQLVA
Sbjct: 347 TEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLSALAPFVVLAEKLGRLAVQLVA 406
Query: 397 GGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVT 456
GGSGV+SVKV+YAS+RGPDDLDTRLLRAM+TKG+IEPISSVFVNLVNADF AKQRGLR+T
Sbjct: 407 GGSGVRSVKVTYASSRGPDDLDTRLLRAMVTKGLIEPISSVFVNLVNADFTAKQRGLRIT 466
Query: 457 EERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVD 516
EER+VLDGSPENPLEFIQVQIANVESKF SAIS+ G+I+VEGRVKDGKPHLTKVGSFGVD
Sbjct: 467 EERVVLDGSPENPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGKPHLTKVGSFGVD 526
Query: 517 VSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSRE 576
VSLEGS+IL R VDQPGIIGKVGS+LG+ NVNV+FMSVGR AP+KQAVMTIGVDEEPSRE
Sbjct: 527 VSLEGSLILLRHVDQPGIIGKVGSILGEENVNVSFMSVGRTAPRKQAVMTIGVDEEPSRE 586
Query: 577 VLKKIGETPAIEEFVFLKL 595
L +IG PAIEEFVFL+L
Sbjct: 587 ALTRIGNLPAIEEFVFLEL 605
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445906|ref|XP_004140713.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Cucumis sativus] gi|449501685|ref|XP_004161437.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/562 (85%), Positives = 524/562 (93%), Gaps = 1/562 (0%)
Query: 35 PRRRKTKRFAVLATF-ITSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISL 93
PR RF VL + + +KPTVLVAEKLGEAGLD+LK FANVDCSYNLSPEELCTKISL
Sbjct: 38 PRSVAAPRFVVLVSASLNAKPTVLVAEKLGEAGLDLLKEFANVDCSYNLSPEELCTKISL 97
Query: 94 CDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAA 153
CDALIVRSGTKV+REVFESS GRLKVVGRAGVGIDNVDL+AATEHGCLVVNAPTANT+AA
Sbjct: 98 CDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAA 157
Query: 154 AEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213
AEHGIALLTAMARN+AQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVG+EVARRAKG
Sbjct: 158 AEHGIALLTAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 217
Query: 214 LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMK 273
LGM+VIAHDPYA ADRARA GV LV FEEAI+TADFISLHMPLTPATSK+ NDE F KMK
Sbjct: 218 LGMHVIAHDPYAPADRARAIGVELVGFEEAIATADFISLHMPLTPATSKILNDENFAKMK 277
Query: 274 KGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG 333
KGVRIVNVARGGV+DEEALVRALD+GI++QAALDVFT EPP KDSKL+ HENVTVTPHLG
Sbjct: 278 KGVRIVNVARGGVIDEEALVRALDAGIVAQAALDVFTVEPPPKDSKLIQHENVTVTPHLG 337
Query: 334 ASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQ 393
AST EAQEGVA+EIAEAV+GALKGELAATAVNAPMVPAEV++EL PFV LAEKLG LAVQ
Sbjct: 338 ASTMEAQEGVAVEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQ 397
Query: 394 LVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGL 453
LVAGGSGVK+VKV+YAS+R PDDLDTRLLRAMITKG+IEPISSVFVNLVNADF AKQRGL
Sbjct: 398 LVAGGSGVKTVKVTYASSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGL 457
Query: 454 RVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSF 513
R+TEER+++DGSPE PLE+IQVQIANVESKF SAISD G+I+VEG VKDG PHLTKVGSF
Sbjct: 458 RITEERVIIDGSPEKPLEYIQVQIANVESKFASAISDSGEIKVEGLVKDGVPHLTKVGSF 517
Query: 514 GVDVSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEP 573
VDVSLEGSIILCRQVDQPG+IGKVGS+LG+ NVNV+FMSVGRIAP+KQAVM IGVDE+P
Sbjct: 518 EVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDEQP 577
Query: 574 SREVLKKIGETPAIEEFVFLKL 595
S+E LK+IG+ PAIEEFVFLKL
Sbjct: 578 SKESLKRIGDVPAIEEFVFLKL 599
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428898|ref|XP_002285358.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/549 (87%), Positives = 519/549 (94%)
Query: 47 ATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVT 106
AT + +KPTVLVAEKLG AGLD+LK+FANVDC+YNLSPEELCTKISLCDALIVRSGTKV+
Sbjct: 47 ATALDAKPTVLVAEKLGAAGLDLLKDFANVDCAYNLSPEELCTKISLCDALIVRSGTKVS 106
Query: 107 REVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMAR 166
REVFE+S+GRLKVVGRAGVGIDNVDL+AATEHGCLVVNAPTANT+AAAEHGIALLTAMAR
Sbjct: 107 REVFEASSGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMAR 166
Query: 167 NIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ 226
N+AQADASVK+GKWQRNKYVGVSLVGKTLAVMGFGKVG+EV RRAKGLGM+VIAHDPYA
Sbjct: 167 NVAQADASVKSGKWQRNKYVGVSLVGKTLAVMGFGKVGSEVTRRAKGLGMHVIAHDPYAA 226
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
ADRARA GV LV F+EAISTADFISLHMPLTPATSKM NDE F KMKKGVRI+NVARGGV
Sbjct: 227 ADRARAIGVELVGFDEAISTADFISLHMPLTPATSKMLNDETFAKMKKGVRIINVARGGV 286
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIE 346
+DEEALVRALD+GI++QAALDVFTEEPP KDSKL+LHENVTVTPHLGAST EAQEGVAIE
Sbjct: 287 IDEEALVRALDAGIVAQAALDVFTEEPPPKDSKLILHENVTVTPHLGASTMEAQEGVAIE 346
Query: 347 IAEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKV 406
IAEAV+GALKGELAATAVNAPMVPAEV+SEL PFV LAEKLG LAVQLV+GGSGVKSVKV
Sbjct: 347 IAEAVVGALKGELAATAVNAPMVPAEVLSELKPFVELAEKLGRLAVQLVSGGSGVKSVKV 406
Query: 407 SYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSP 466
+YASAR PDDLDTRLLRAMITKG+IEPISSVFVNLVNADF AKQRGLR+TEER +LDGSP
Sbjct: 407 TYASARAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFSAKQRGLRITEERSILDGSP 466
Query: 467 ENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILC 526
E+PLEFIQVQIANVESKF SAIS+ G+I VEGRVKDG PHLTKVGSF VDVSLEGSIILC
Sbjct: 467 ESPLEFIQVQIANVESKFASAISESGEITVEGRVKDGIPHLTKVGSFEVDVSLEGSIILC 526
Query: 527 RQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPA 586
RQVDQPG+IGKVGS+LG+ NVNV+FMSVGR+AP+K AVM IGVDE+PS+ LKKIGE PA
Sbjct: 527 RQVDQPGMIGKVGSILGEENVNVSFMSVGRVAPRKHAVMAIGVDEQPSKVTLKKIGEIPA 586
Query: 587 IEEFVFLKL 595
+EEFVFLKL
Sbjct: 587 VEEFVFLKL 595
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536156|ref|XP_003536605.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/593 (80%), Positives = 541/593 (91%), Gaps = 1/593 (0%)
Query: 4 ASSTKKLMLAASPNKPRLSSTLVPPATIRGPPRRRKTKRFA-VLATFITSKPTVLVAEKL 62
A++T + + SP+ S + ++ P+RR ++ V++ + +KPTVLVAEKL
Sbjct: 2 ATATSQTLRFQSPSLSLSSKIPLSAFSVSLRPQRRASRHLVLVVSAGLDAKPTVLVAEKL 61
Query: 63 GEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGR 122
G+AGL +LK+FANVDCSYNLS EELCTKISLCDALIVRSGTKV+REVFESSAGRLKVVGR
Sbjct: 62 GDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSAGRLKVVGR 121
Query: 123 AGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQR 182
AGVGIDNVDL+AATEHGCLVVNAPTANT+AAAEHGIALL AMARN+AQADASVKAGKWQR
Sbjct: 122 AGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQR 181
Query: 183 NKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEE 242
NKYVGVSLVGKTLAV+GFGKVG+EVARRAKGLGMNVIAHDPYA ADRARA GV LV+F+E
Sbjct: 182 NKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARAIGVELVNFDE 241
Query: 243 AISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIIS 302
AI+TADFISLHMPLT ATSK+ NDE F KMKKGVRIVNVARGGV+DE+ALVRALDSGI++
Sbjct: 242 AIATADFISLHMPLTAATSKILNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVA 301
Query: 303 QAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAAT 362
QAALDVFTEEPP KDSKL+LHE VT TPHLGAST EAQEGVAIEIAEAV+GALKGELAAT
Sbjct: 302 QAALDVFTEEPPPKDSKLILHELVTATPHLGASTMEAQEGVAIEIAEAVVGALKGELAAT 361
Query: 363 AVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLL 422
AVNAPMVP+EV++EL PF+ LAEKLG LAVQLVAGGSGVK+VKV+YA++RGPDDLDTRLL
Sbjct: 362 AVNAPMVPSEVLTELKPFIDLAEKLGRLAVQLVAGGSGVKTVKVTYATSRGPDDLDTRLL 421
Query: 423 RAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVES 482
RAMITKG+IEPISSVFVNLVNADF AKQRG+R+TEE+++LDGSPENPLEF+QVQIANVES
Sbjct: 422 RAMITKGLIEPISSVFVNLVNADFTAKQRGIRITEEKVILDGSPENPLEFVQVQIANVES 481
Query: 483 KFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGIIGKVGSLL 542
+F SAISD G+I+VEGRVKDG PHLTKVGSF VDVSLEGSIILCRQVDQPG+IGKVGS+L
Sbjct: 482 RFASAISDSGEIKVEGRVKDGIPHLTKVGSFDVDVSLEGSIILCRQVDQPGMIGKVGSVL 541
Query: 543 GDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595
G+ NVNV+FMSVGRIAP+KQAVM IGVDE+PS+E LKKIG+ PA+EEFVFLKL
Sbjct: 542 GEENVNVSFMSVGRIAPRKQAVMAIGVDEQPSKESLKKIGDIPAVEEFVFLKL 594
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555301|ref|XP_002518687.1| d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis] gi|223542068|gb|EEF43612.1| d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 979 bits (2530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/558 (85%), Positives = 518/558 (92%)
Query: 38 RKTKRFAVLATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDAL 97
R+ RF VL + +KPTVLV EKLGEAGL++LK FANVDCSYNLSPEELCTKISLCDAL
Sbjct: 39 RRNSRFIVLTASLDAKPTVLVTEKLGEAGLNLLKEFANVDCSYNLSPEELCTKISLCDAL 98
Query: 98 IVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHG 157
IVRSGTKV REVFESS GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANT+AAAEHG
Sbjct: 99 IVRSGTKVNREVFESSGGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTVAAAEHG 158
Query: 158 IALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMN 217
IALL AMARN+AQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVG+EVARRAKGLGM+
Sbjct: 159 IALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMH 218
Query: 218 VIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVR 277
VIAHDPYA ADRARA GV LVSF+EAI TADFISLHMPLTPATSK+ NDE F KMKKGVR
Sbjct: 219 VIAHDPYAPADRARAIGVELVSFDEAIGTADFISLHMPLTPATSKILNDENFAKMKKGVR 278
Query: 278 IVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTT 337
IVNVARGGV+DE+ALVRA+D+GI++QAALDVFTEEPPAKDSKLV HE VTVTPHLGAST
Sbjct: 279 IVNVARGGVIDEDALVRAIDAGIVAQAALDVFTEEPPAKDSKLVQHEKVTVTPHLGASTV 338
Query: 338 EAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAG 397
EAQEGVAIEIAEAV+GALKGELAATAVNAPMVPAEV++EL PFV LAEKLG LAVQLVAG
Sbjct: 339 EAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVMLAEKLGRLAVQLVAG 398
Query: 398 GSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTE 457
GSGVK+VKV+Y S R PDDLDTRLLRAMITKG+IEPISSVFVNLVNADF AKQRGLR+ E
Sbjct: 399 GSGVKTVKVTYGSTRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRIAE 458
Query: 458 ERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDV 517
ER+ LDGSPE+PLEFIQVQIANVESKF SAIS+ G+I+VEG+VKDG PHLTKVGSF VDV
Sbjct: 459 ERVTLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGKVKDGIPHLTKVGSFEVDV 518
Query: 518 SLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREV 577
SLEGSIILCRQVDQPG+IGKVGS+LG+ NVNV+FMSVGRIAP+KQAVM IGVD++P +E
Sbjct: 519 SLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDDQPKKES 578
Query: 578 LKKIGETPAIEEFVFLKL 595
LKKIG+ PAIEEFVFLKL
Sbjct: 579 LKKIGDIPAIEEFVFLKL 596
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538186|ref|XP_002510158.1| d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis] gi|223550859|gb|EEF52345.1| d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 977 bits (2525), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/598 (81%), Positives = 539/598 (90%), Gaps = 3/598 (0%)
Query: 1 MAAAS-STKKLMLAASPNKPRLSSTLVPPATIRGPPRR--RKTKRFAVLATFITSKPTVL 57
MA S S+ L+ +LS + PP RR R +++F VLAT + +KPTVL
Sbjct: 1 MAGTSLSSSNLIFTQDKLSWKLSLSSFPPLPTTPFNRRQTRSSQKFLVLATLMDAKPTVL 60
Query: 58 VAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRL 117
VAEKLGEAGLD+LK+FANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFE S GRL
Sbjct: 61 VAEKLGEAGLDLLKSFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFERSGGRL 120
Query: 118 KVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKA 177
KVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS+K+
Sbjct: 121 KVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASLKS 180
Query: 178 GKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL 237
GKWQR+KYVGVSLVGKTLAV+GFGKVG+EVARRAKGLGM+VIAHDPYA ADRARA GV L
Sbjct: 181 GKWQRSKYVGVSLVGKTLAVIGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVEL 240
Query: 238 VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALD 297
SFEEAIS ADF+SLHMPLTPATSKMFND+ F KMKKGVRIVNVARGGV+DE+ALVRALD
Sbjct: 241 ASFEEAISLADFVSLHMPLTPATSKMFNDDTFSKMKKGVRIVNVARGGVIDEDALVRALD 300
Query: 298 SGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKG 357
SGI+SQAALDVFTEEPP + SKLVLHENV TPHLGASTTEAQEGVAIE++EAVIGALKG
Sbjct: 301 SGIVSQAALDVFTEEPPPQGSKLVLHENVIATPHLGASTTEAQEGVAIEVSEAVIGALKG 360
Query: 358 ELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDL 417
ELAATAVNAPMVPAEV+SELA V LAEKLG LAVQLV+GGSGV+SVKV+YAS+R PDDL
Sbjct: 361 ELAATAVNAPMVPAEVLSELAASVVLAEKLGRLAVQLVSGGSGVQSVKVTYASSRDPDDL 420
Query: 418 DTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQI 477
DTRLLRAMI KG++EPIS V VNLVN+DF AKQRG+++ EERIVLDGS ENPLE+IQVQI
Sbjct: 421 DTRLLRAMIIKGLVEPISDVSVNLVNSDFTAKQRGIKIIEERIVLDGSLENPLEYIQVQI 480
Query: 478 ANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGIIGK 537
ANVESKFG+AIS+ G+I+VEGRVK+GKPHLT VGSFGVDVSLEGS+ILCRQ+DQPG+IGK
Sbjct: 481 ANVESKFGTAISESGEIKVEGRVKEGKPHLTMVGSFGVDVSLEGSLILCRQIDQPGMIGK 540
Query: 538 VGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595
VGS+LG+ NVNV+FM+VGRIAP+KQAVMTIGVDEEP++E LK+IGE P +EEFVFLKL
Sbjct: 541 VGSILGEENVNVSFMTVGRIAPRKQAVMTIGVDEEPNKEALKRIGEIPLVEEFVFLKL 598
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906486|gb|ACJ11736.1| phosphoglycerate dehydrogenase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 975 bits (2521), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/583 (82%), Positives = 526/583 (90%), Gaps = 9/583 (1%)
Query: 13 AASPNKPRLSSTLVPPATIRGPPRRRKTKRFAVLATFITSKPTVLVAEKLGEAGLDVLKN 72
AA PN R S R P+RR+ ++ ++KPTVLVAEKLGEAGL +LK
Sbjct: 29 AAFPNTARFS---------RSQPQRRRFLIVTASSSSFSNKPTVLVAEKLGEAGLTLLKE 79
Query: 73 FANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDL 132
FANVDCSYNLSPEELCTKISLCDALIVRSGTKV REVFESS GRLKVVGRAGVGIDNVDL
Sbjct: 80 FANVDCSYNLSPEELCTKISLCDALIVRSGTKVNREVFESSGGRLKVVGRAGVGIDNVDL 139
Query: 133 SAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVG 192
SAATEHGCLVVNAPTANT+AAAEHGIALL AMARN+AQADASVKAGKWQRNKYVGVSLVG
Sbjct: 140 SAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVG 199
Query: 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISL 252
KTLAV+GFGKVG+EVARRAKGLGM+VIAHDPYA ADRARA GV LVSF+EAI+TADFISL
Sbjct: 200 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFDEAIATADFISL 259
Query: 253 HMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE 312
HMPLTPAT+KM NDE F KMKKGVRIVNVARGGV+DEEALVRALD+G ++QAALDVF+EE
Sbjct: 260 HMPLTPATNKMLNDETFAKMKKGVRIVNVARGGVIDEEALVRALDAGTVAQAALDVFSEE 319
Query: 313 PPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAE 372
PP +DSKLV HE VTVTPHLGAST EAQEGVAIEIAEAV+GALKGELAATAVNAPMVPAE
Sbjct: 320 PPKQDSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAE 379
Query: 373 VISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIE 432
V++EL P+V LAEKLG L VQLVAGGSGVK+VKVSYAS+R PDDLDTRLLRAMITKGIIE
Sbjct: 380 VLTELKPYVELAEKLGRLGVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGIIE 439
Query: 433 PISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIG 492
PISSVFVNLVNAD+ AKQRGLR+TEERI+LDGSPE+PLE IQVQIANVESKF SA+S+ G
Sbjct: 440 PISSVFVNLVNADYTAKQRGLRITEERILLDGSPESPLESIQVQIANVESKFASAMSESG 499
Query: 493 DIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFM 552
+I+VEGRVKDG PHLTKVGSF VDVSLEGSIILCRQVDQPG+IG VGS+LG+ NVNV+FM
Sbjct: 500 EIKVEGRVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGEENVNVSFM 559
Query: 553 SVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595
SVGR+AP+K AVM IGVDE+PS+E LK+IGE PAIEEFVFLKL
Sbjct: 560 SVGRVAPRKHAVMAIGVDEQPSKETLKRIGEVPAIEEFVFLKL 602
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574282|ref|XP_003555278.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/562 (84%), Positives = 524/562 (93%), Gaps = 1/562 (0%)
Query: 35 PRRRKTKRFA-VLATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISL 93
PR R ++ V++ + +KPTVLVAEKLG+AGL +LK+FANVDCSYNLS EELCTKISL
Sbjct: 34 PRHRGSRPLVLVVSAGLDAKPTVLVAEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISL 93
Query: 94 CDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAA 153
CDALIVRSGTKV+REVFESSAGRLKVVGRAGVGIDNVDL+AATEHGCLVVNAPTANT+AA
Sbjct: 94 CDALIVRSGTKVSREVFESSAGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAA 153
Query: 154 AEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213
AEHGIALL AMARNIAQADASVKAGKWQRNKYVGVSLVGKTLA++GFGKVG+EVARRAKG
Sbjct: 154 AEHGIALLAAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAILGFGKVGSEVARRAKG 213
Query: 214 LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMK 273
LGM VIAHDPYA ADRARA GV LV+FEEAI+TADFISLHMPLT ATSKM NDE F KMK
Sbjct: 214 LGMTVIAHDPYAPADRARAVGVELVTFEEAIATADFISLHMPLTAATSKMLNDETFAKMK 273
Query: 274 KGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG 333
KGVRIVNVARGGV+DE+ALVRALDSGI++QAALDVFTEEPP KDSKL+LHE VT TPHLG
Sbjct: 274 KGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTEEPPPKDSKLILHELVTATPHLG 333
Query: 334 ASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQ 393
AST EAQEGVAIEIAEAV+GALKGELAATAVNAPMVP+EV++EL PFV LAEKLG LAVQ
Sbjct: 334 ASTMEAQEGVAIEIAEAVLGALKGELAATAVNAPMVPSEVLTELKPFVDLAEKLGRLAVQ 393
Query: 394 LVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGL 453
LVAGGSGVK+VKV+YA++R PDDLDTRLLRAMITKG+IEPISSVFVNLVNADF AKQRG+
Sbjct: 394 LVAGGSGVKTVKVTYATSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGI 453
Query: 454 RVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSF 513
R+TEER++LDGSPENPLEFIQVQIANVES+F SAISD G+I+VEGRVKD PHLTKVGSF
Sbjct: 454 RITEERVILDGSPENPLEFIQVQIANVESRFASAISDSGEIKVEGRVKDDIPHLTKVGSF 513
Query: 514 GVDVSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEP 573
VDVSLEGSIILCRQVDQPG+IGKVGS+LG+ NVNV+FMSVGRIAP+KQAVM IGVDE+P
Sbjct: 514 DVDVSLEGSIILCRQVDQPGMIGKVGSVLGEENVNVSFMSVGRIAPRKQAVMAIGVDEQP 573
Query: 574 SREVLKKIGETPAIEEFVFLKL 595
S+E LKKIGE P++EEFVFLKL
Sbjct: 574 SKESLKKIGEIPSVEEFVFLKL 595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 595 | ||||||
| TAIR|locus:2124266 | 603 | EDA9 "embryo sac development a | 0.998 | 0.985 | 0.716 | 4.5e-217 | |
| TAIR|locus:2090649 | 588 | AT3G19480 [Arabidopsis thalian | 0.959 | 0.971 | 0.731 | 6.6e-216 | |
| TIGR_CMR|DET_0599 | 526 | DET_0599 "D-3-phosphoglycerate | 0.863 | 0.977 | 0.377 | 3.6e-89 | |
| TIGR_CMR|SPO_3355 | 531 | SPO_3355 "D-3-phosphoglycerate | 0.552 | 0.619 | 0.434 | 2.2e-80 | |
| TIGR_CMR|GSU_1198 | 542 | GSU_1198 "D-3-phosphoglycerate | 0.549 | 0.603 | 0.418 | 2e-77 | |
| TIGR_CMR|CHY_2698 | 525 | CHY_2698 "D-3-phosphoglycerate | 0.694 | 0.786 | 0.410 | 1.1e-76 | |
| UNIPROTKB|L7N0I9 | 572 | LOC607890 "Uncharacterized pro | 0.699 | 0.727 | 0.397 | 9.9e-71 | |
| UNIPROTKB|J9P9I6 | 520 | LOC607890 "Uncharacterized pro | 0.665 | 0.761 | 0.400 | 1.4e-70 | |
| RGD|61987 | 533 | Phgdh "phosphoglycerate dehydr | 0.665 | 0.742 | 0.410 | 1.6e-70 | |
| MGI|MGI:1355330 | 533 | Phgdh "3-phosphoglycerate dehy | 0.665 | 0.742 | 0.410 | 2.1e-70 |
| TAIR|locus:2124266 EDA9 "embryo sac development arrest 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2097 (743.2 bits), Expect = 4.5e-217, P = 4.5e-217
Identities = 429/599 (71%), Positives = 489/599 (81%)
Query: 2 AAASSTKKLMLAASPNKPRLSSTLVPPA-TIRGPPRRRKT-KRFAVLATFIT---SKPTV 56
AAASS+ + + N S + +P A ++ P R R T +R VL + T SKPT+
Sbjct: 5 AAASSSIAVATNSLRNVTLSSRSPLPSAISVAFPSRGRNTLQRRLVLVSCSTGDGSKPTI 64
Query: 57 LVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR 116
LVAEKLG+AG+ +L++ ANVDCSYN++PEEL KISLCDALIVRSGTKV REVFESS GR
Sbjct: 65 LVAEKLGDAGIKLLEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGREVFESSHGR 124
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVK 176
LKVVGRAGVGIDNVDLSAATE GCLVVNAPTANTIAAAEHGIAL+ AMARN+AQADASVK
Sbjct: 125 LKVVGRAGVGIDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQADASVK 184
Query: 177 AGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG 236
AG+W+RNKYVGVSLVGKTLAV+GFGKVGTEVARRAKGLGM VIAHDPYA ADRA A GV
Sbjct: 185 AGEWKRNKYVGVSLVGKTLAVLGFGKVGTEVARRAKGLGMRVIAHDPYAPADRAHAIGVD 244
Query: 237 LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRAL 296
LVSF+EA++TADFISLHMPLTP TSK+ NDE F KMKKGVRIVNVARGGV+DE+ALVRAL
Sbjct: 245 LVSFDEALATADFISLHMPLTPTTSKILNDETFAKMKKGVRIVNVARGGVIDEDALVRAL 304
Query: 297 DSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTXXXXXXXXXXXXXXXXXLK 356
D+GI++QAALDVFT+EPPAKDSKLV HE VTVTPHLGAST L
Sbjct: 305 DAGIVAQAALDVFTKEPPAKDSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALN 364
Query: 357 GELAATAVNAPMVPAEVISELAPFVTLAEKXXXXXXXXXXXXXXXXXXXXXXXXXRGPDD 416
GELAATAVNAPMV AEV++EL P+V LAEK R DD
Sbjct: 365 GELAATAVNAPMVSAEVLTELKPYVVLAEKLGRLAVQLVAGGSGVKNAKITYASARATDD 424
Query: 417 LDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQ 476
LDTRLLRAMITKGIIEPIS V+VNLVNADF AKQRGLR++EER++LDGSPE+PLE I VQ
Sbjct: 425 LDTRLLRAMITKGIIEPISDVYVNLVNADFTAKQRGLRLSEERVLLDGSPESPLETITVQ 484
Query: 477 IANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGIIG 536
++NVESKF S++S+ G+++VEG+VKDG PHLTKVGSF VDV+LEGSIILCRQVDQPG+IG
Sbjct: 485 LSNVESKFASSLSESGEVKVEGKVKDGVPHLTKVGSFEVDVTLEGSIILCRQVDQPGMIG 544
Query: 537 KVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595
VGS+LG++NVNVNFMSVGRIAP+KQA+M IGVD+ PS+E LKKIGE PA+EEFVFLKL
Sbjct: 545 TVGSILGESNVNVNFMSVGRIAPRKQAIMAIGVDDIPSKETLKKIGEIPAVEEFVFLKL 603
|
|
| TAIR|locus:2090649 AT3G19480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2086 (739.4 bits), Expect = 6.6e-216, P = 6.6e-216
Identities = 423/578 (73%), Positives = 476/578 (82%)
Query: 22 SSTLVPPATIRGPPRRRKTKRFAVLATFITS----KPTVLVAEKLGEAGLDVLKNFANVD 77
SS LV + P R+R R +L T +S KPT+LV EKLG+AG+D+LK +ANVD
Sbjct: 14 SSRLVTTPSSVFPIRQR---RRIILVTSSSSGGGGKPTILVTEKLGQAGIDLLKKYANVD 70
Query: 78 CSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATE 137
CSY+LS EELCTKISLCDALIVRSGTKV R+VFESS GRLKVVGRAGVGIDNVDL+AATE
Sbjct: 71 CSYDLSLEELCTKISLCDALIVRSGTKVGRDVFESSRGRLKVVGRAGVGIDNVDLAAATE 130
Query: 138 HGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAV 197
+GCLVVNAPTANT+AAAEHGIALLTAMARNIAQADAS+KAGKW RNKYVGVSLVGKTLAV
Sbjct: 131 YGCLVVNAPTANTVAAAEHGIALLTAMARNIAQADASIKAGKWTRNKYVGVSLVGKTLAV 190
Query: 198 MGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLT 257
+GFGKVG+EVARRA+GLGM+VI HDPYA ADRARA GV LVSFE AISTADFISLH+PLT
Sbjct: 191 LGFGKVGSEVARRARGLGMHVITHDPYAPADRARAIGVELVSFEVAISTADFISLHLPLT 250
Query: 258 PATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD 317
ATSKM ND F MKKGVRIVNVARGGV+DEEAL+RALDSGI++QAALDVFT EPP KD
Sbjct: 251 AATSKMMNDVTFAMMKKGVRIVNVARGGVIDEEALLRALDSGIVAQAALDVFTVEPPVKD 310
Query: 318 SKLVLHENVTVTPHLGASTTXXXXXXXXXXXXXXXXXLKGELAATAVNAPMVPAEVISEL 377
+KLVLHE+VT TPHLGAST L+GELAATAVNAPMVP EV+ EL
Sbjct: 311 NKLVLHESVTATPHLGASTMEAQEGVSIEVAEAVIGALRGELAATAVNAPMVPLEVLREL 370
Query: 378 APFVTLAEKXXXXXXXXXXXXXXXXXXXXXXXXXRGPDDLDTRLLRAMITKGIIEPISSV 437
P+V LAEK R PDDLDTRLLRAM+ KGIIEPISSV
Sbjct: 371 KPYVVLAEKLGRLAVQLVTGGSGVNAVKVTYASSRAPDDLDTRLLRAMVIKGIIEPISSV 430
Query: 438 FVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVE 497
F+NLVN+D+IAKQRG++++EER+VLDGSPENP+E+I V+IANVES+F SA+S+ G+I+VE
Sbjct: 431 FINLVNSDYIAKQRGVKISEERMVLDGSPENPIEYITVRIANVESRFASALSESGEIKVE 490
Query: 498 GRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRI 557
GRVK G P LTKVG FGVDVSLEGS+ILCRQVDQPG+IGKV S+LGD NVNV+FMSVGRI
Sbjct: 491 GRVKQGVPSLTKVGLFGVDVSLEGSVILCRQVDQPGMIGKVASILGDENVNVSFMSVGRI 550
Query: 558 APQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595
AP KQAVM IGVDE+PS+E LKKIG+ PAIEEFVFLKL
Sbjct: 551 APGKQAVMAIGVDEQPSKETLKKIGDIPAIEEFVFLKL 588
|
|
| TIGR_CMR|DET_0599 DET_0599 "D-3-phosphoglycerate dehydrogenase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 203/538 (37%), Positives = 303/538 (56%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAG 115
VLV++ L GL LK A VD L PEEL + I DAL+VRS T+VT ++ +
Sbjct: 4 VLVSDALSATGLSPLKEIAQVDVKTGLKPEELVSIIGEYDALLVRSQTQVTADIINAGK- 62
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
+L+V+GRAGVG+DN+DL AAT +G +VVNAPT NTI+A EH +AL+ +MAR+I +A+AS+
Sbjct: 63 KLQVIGRAGVGVDNIDLKAATGNGIIVVNAPTGNTISATEHTLALMLSMARHIPRANASL 122
Query: 176 KAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGV 235
K+G+W+RN++VG L GKTL ++G G +G+E+A+RA L M VI +DP+ +RA+ V
Sbjct: 123 KSGQWKRNEFVGSELKGKTLGIVGLGNIGSEIAKRALALEMRVIGYDPFISMERAKKLQV 182
Query: 236 GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRA 295
LV FE+ + ADFI+LH+P+T T + + MK VR++N +RGG++DEEAL A
Sbjct: 183 ELVPFEDLLKQADFITLHVPMTGQTKGLIGPKELEMMKPTVRLINTSRGGIIDEEALAAA 242
Query: 296 LDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTXXXXXXXXXXXXXXXXXL 355
+ I AA+DVF++EP +S L +N+ VTPHLGAST
Sbjct: 243 IREKRIGGAAIDVFSKEP-CTESCLFECDNIIVTPHLGASTAEAQELATSDVVKQVIDVF 301
Query: 356 KGELAATAVNAPMVPAEVISELAPFVTLAEKXXXXXXXXXXXXXXXXXXXXXXXXXRGPD 415
+G A AVNAP + AE + + PF+ +A
Sbjct: 302 EGRPARYAVNAPYISAESLPVVGPFMPVARTVGSLVSQLTDGHMKNVTIKYCGELAA--- 358
Query: 416 DLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQV 475
DT L+A++ GI+E IS VN+VNAD +A QRGL VTE++ + + +N I V
Sbjct: 359 -YDTTALKALVLGGILEHISEERVNVVNADIVAAQRGLGVTEQK---ESACQNFSSLITV 414
Query: 476 QIANVESKFGSAISDI--GDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPG 533
I K + + GD+ + R+ D + G G + +D+PG
Sbjct: 415 TIDTDNGKSNTVAGSLVRGDVHIV-RLNDYWIDIVPTG---------GYFLFADHIDRPG 464
Query: 534 IIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE---EPSREVLKKIGETPAIE 588
+IG G + GD ++N+++M + R + QA+M + +DE E R+ L + + ++
Sbjct: 465 LIGAAGKITGDADINISYMHLSRQKARGQALMILALDEPLPEKQRQQLLSLPDVQTVQ 522
|
|
| TIGR_CMR|SPO_3355 SPO_3355 "D-3-phosphoglycerate dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 666 (239.5 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 145/334 (43%), Positives = 201/334 (60%)
Query: 54 PTVLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEE--LCTKISLCDALIVRSGTKVTREVF 110
P VL+++KL +A + + ++ +VD +L ++ L I D L +RS TKVT ++
Sbjct: 3 PKVLISDKLSDAAVQIFRDRGIDVDFQPDLGKDKDKLAEVIGQYDGLAIRSATKVTEKIL 62
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
E+ A LKV+GRAG+G DNVD AA++ G +V+N P N I AEH IA++ A+AR I +
Sbjct: 63 EN-ATNLKVIGRAGIGTDNVDKDAASKKGVIVMNTPFGNMITTAEHAIAMMFAVARQIPE 121
Query: 171 ADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA 230
A AS AGKW+++K++GV L KTL V+G G +G V RA+GL M VIA+DP+ ++A
Sbjct: 122 ASASTHAGKWEKSKFMGVELTNKTLGVIGAGNIGGIVCDRARGLKMKVIAYDPFLGEEKA 181
Query: 231 RATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEE 290
GV V ++ + ADFI+LH+PLT T + E K KKGVRI+N ARGG+VDEE
Sbjct: 182 NKMGVEKVELDDLLKRADFITLHVPLTDQTRNILGRENLAKTKKGVRIINCARGGLVDEE 241
Query: 291 ALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTXXXXXXXXXXXXX 350
AL L SG ++ AA DVF+ EP AK++ L NV TPHLGA+TT
Sbjct: 242 ALAEMLQSGHVAGAAFDVFSVEP-AKENPLFGLPNVVCTPHLGAATTEAQENVALQVAEQ 300
Query: 351 XXXXLKGELAATAVNAPMVPAEVISELAPFVTLA 384
L A+N P V AE + P++ LA
Sbjct: 301 MSNYLLTGAVENALNMPSVTAEEAKVMGPWIALA 334
|
|
| TIGR_CMR|GSU_1198 GSU_1198 "D-3-phosphoglycerate dehydrogenase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 139/332 (41%), Positives = 193/332 (58%)
Query: 56 VLVAEKLGEAGLDVLKNFANV--DCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESS 113
++V +++ + GL +L V D L EEL I D +I RSGT V RE+ ++
Sbjct: 3 IIVTDEVAQEGLALLAQDPRVELDVKLGLKKEELLAIIGDYDVIITRSGTTVNRELLDAG 62
Query: 114 AGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADA 173
+L++V RAGVGIDNVD+ A+ G +VVNAP NT +AAEH +ALL + RN+ +A+
Sbjct: 63 K-KLRLVARAGVGIDNVDVDYASSRGVIVVNAPFGNTNSAAEHAMALLLSFCRNVTRANG 121
Query: 174 SVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARAT 233
S+K+G+W+R + G L GKT V+G GKVG VA R K +V+A DPY RA
Sbjct: 122 SLKSGEWKRAPFTGYELKGKTAGVIGLGKVGGRVATRLKAFECDVLACDPYIAVKRAHDL 181
Query: 234 GVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293
GV LVS +E D I++H PLT T M + MK GV IVN ARGG+++E AL+
Sbjct: 182 GVKLVSHDEIYKNCDIITVHTPLTDETRNMIGERELAMMKDGVIIVNAARGGIIEEAALL 241
Query: 294 RALDSGIISQAALDVFTEEPPAKD--SKLVLHENVTVTPHLGASTTXXXXXXXXXXXXXX 351
+ L+SG ++ AA+DVF+EEPP + KL+ HE V VTPHLGA+T
Sbjct: 242 KYLESGKVAGAAVDVFSEEPPKSEYLKKLIGHERVVVTPHLGANTFEAQVNVAVDVSREI 301
Query: 352 XXXLKGELAATAVNAPMVPAEVISELAPFVTL 383
L + AVN P ++ ++ PF+ L
Sbjct: 302 LNYLDDQPLENAVNIPRFDLALMDQMRPFLNL 333
|
|
| TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 173/421 (41%), Positives = 243/421 (57%)
Query: 56 VLVAEKLGEAGLDVLKNFAN-VDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA 114
+L ++ + E GL++L+ VD LS EEL I DALIVRS TKVT + E+ A
Sbjct: 3 ILASDPIAEKGLNILREEGFIVDEKTKLSEEELIKIIPQYDALIVRSETKVTARIIEA-A 61
Query: 115 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS 174
LK++GRAGVG+DN+DL+AA++ G +VVN+P NTIAAAEH AL+ A+ RNI QA A+
Sbjct: 62 ENLKIIGRAGVGVDNIDLAAASKKGIIVVNSPEGNTIAAAEHTFALMMALLRNIPQAHAA 121
Query: 175 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
+K GKW R ++ G L GKT+ ++G G++GT VA+R K VI +DP+ +RA+ G
Sbjct: 122 LKEGKWLRKEFTGYELRGKTVGIIGLGRIGTAVAKRVKAFETRVIGYDPFISEERAQMLG 181
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
+ L+S EE + +D +++H+PL T + N E MKK I+N ARGG++DEEAL
Sbjct: 182 ITLMSLEELLQNSDIVTMHLPLNNETRNLINRERLKLMKKSAFIINCARGGIIDEEALYE 241
Query: 295 ALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTXXXXXXXXXXXXXXXXX 354
AL +G I+ AALDVF++EP +S L NV VTPHLGAST
Sbjct: 242 ALKAGEIAGAALDVFSKEP-LTESPLFELPNVIVTPHLGASTKEAQINVAIDVAREIASV 300
Query: 355 LKGELAATAVNAPMVPAEVISELAPFVTLAEKXXXXXXXXXXXXXXXXXXXXXXXXXRGP 414
LKG LA AVN P + E L P++ LAEK +
Sbjct: 301 LKGGLAQNAVNFPAMDKESYQRLKPYINLAEKLGNFLAQILSGGLLAAEIVYNGSAFKE- 359
Query: 415 DDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQ 474
+TR L KG+++P+ VN VNA +AK+RG++V E ++ +G+ L ++
Sbjct: 360 ---ETRPLTLAALKGLLDPLLMERVNYVNAPVVAKERGIKV-RETVMENGADYTNLITLK 415
Query: 475 V 475
V
Sbjct: 416 V 416
|
|
| UNIPROTKB|L7N0I9 LOC607890 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 168/423 (39%), Positives = 232/423 (54%)
Query: 35 PRRRKTKRFAVLATFITSKPTVLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISL 93
PRRR T R F + VL+++ L +L++ V NLS EEL ++
Sbjct: 28 PRRRPTPRLTPAMAFANLRK-VLISDSLDPCCRQILQDGGLQVVEKQNLSKEELMAELRD 86
Query: 94 CDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAA 153
C+ LIVRS TKVT +V ++A +L+VVGRAG G+DNVDL AAT G LV+N P N+++A
Sbjct: 87 CEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSA 145
Query: 154 AEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213
AE ++ +AR+I QA AS+K GKW+R K++G L GK L ++G G++G EVA R +
Sbjct: 146 AELTCGMIMCLARHIPQATASMKDGKWERKKFMGTELNGKILGILGLGRIGREVATRMQS 205
Query: 214 LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMK 273
GM + +DP + + + GV + EE DFI++H PL P+T+ + ND F + K
Sbjct: 206 FGMKTVGYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCK 265
Query: 274 KGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG 333
KGVR+VN ARGG+VDE AL+RAL SG + AALDVFTEEPP +D LV HE V PHLG
Sbjct: 266 KGVRVVNCARGGIVDEGALLRALRSGQCAGAALDVFTEEPP-RDRALVEHERVISCPHLG 324
Query: 334 ASTTXXXXXXXXXXXXXXXXXLKGELAATAVNAPMVPAEVISELAPFVTLAEKXXXXXXX 393
AST +KG+ A VNA + + P++ LAE
Sbjct: 325 ASTKEAQSRCGEEIAIQFVDMVKGKSLAGVVNAQALTSAFSPHTKPWIGLAEALGTLMQA 384
Query: 394 XXXXXXXXXXXXXXXXXXRGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGL 453
+ + L A+I + + S VNLVNA + ++ GL
Sbjct: 385 WAGSPKGTIQVVTQGTPLKNAGNC---LSPAVIVGLLKDTASQADVNLVNAKLLVQEAGL 441
Query: 454 RVT 456
VT
Sbjct: 442 SVT 444
|
|
| UNIPROTKB|J9P9I6 LOC607890 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
Identities = 161/402 (40%), Positives = 224/402 (55%)
Query: 56 VLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA 114
VL+++ L +L++ V NLS EEL ++ C+ LIVRS TKVT +V ++A
Sbjct: 9 VLISDSLDPCCRQILQDGGLQVVEKQNLSKEELMAELRDCEGLIVRSATKVTADVI-NAA 67
Query: 115 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS 174
+L+VVGRAG G+DNVDL AAT G LV+N P N+++AAE ++ +AR+I QA AS
Sbjct: 68 EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARHIPQATAS 127
Query: 175 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
+K GKW+R K++G L GK L ++G G++G EVA R + GM + +DP + + + G
Sbjct: 128 MKDGKWERKKFMGTELNGKILGILGLGRIGREVATRMQSFGMKTVGYDPIIAPEVSASFG 187
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
V + EE DFI++H PL P+T+ + ND F + KKGVR+VN ARGG+VDE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 295 ALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTXXXXXXXXXXXXXXXXX 354
AL SG + AALDVFTEEPP +D LV HE V PHLGAST
Sbjct: 248 ALRSGQCAGAALDVFTEEPP-RDRALVEHERVISCPHLGASTKEAQSRCGEEIAIQFVDM 306
Query: 355 LKGELAATAVNAPMVPAEVISELAPFVTLAEKXXXXXXXXXXXXXXXXXXXXXXXXXRGP 414
+KG+ A VNA + + P++ LAE +
Sbjct: 307 VKGKSLAGVVNAQALTSAFSPHTKPWIGLAEALGTLMQAWAGSPKGTIQVVTQGTPLKNA 366
Query: 415 DDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVT 456
+ L A+I + + S VNLVNA + ++ GL VT
Sbjct: 367 GNC---LSPAVIVGLLKDTASQADVNLVNAKLLVQEAGLSVT 405
|
|
| RGD|61987 Phgdh "phosphoglycerate dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 165/402 (41%), Positives = 223/402 (55%)
Query: 56 VLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA 114
+L+++ L +L++ V NLS EEL ++ C+ LIVRS TKVT +V ++A
Sbjct: 9 ILISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVI-NAA 67
Query: 115 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS 174
+L+VVGRAG G+DNVDL AAT G LV+N P N+++AAE +L +AR I QA AS
Sbjct: 68 EKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATAS 127
Query: 175 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
+K GKW R K++G L GKTL ++G G++G EVA R + GM + +DP + A + G
Sbjct: 128 MKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDPIISPEVAASFG 187
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
V + EE DFI++H PL P+T+ + ND F + KKGVR+VN ARGG+VDE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 295 ALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTXXXXXXXXXXXXXXXXX 354
AL SG + AALDVFTEEPP +D LV HENV PHLGAST
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 355 LKGELAATAVNAPMVPAEVISELAPFVTLAEKXXXXXXXXXXXXXXXXXXXXXXXXXRGP 414
+KG+ VNA + + P++ LAE +
Sbjct: 307 VKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMHAWAGSPKGTIQVVTQGTSLK-- 364
Query: 415 DDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVT 456
+ T L A+I + E VNLVNA + K+ GL VT
Sbjct: 365 -NAGTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVT 405
|
|
| MGI|MGI:1355330 Phgdh "3-phosphoglycerate dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 165/402 (41%), Positives = 223/402 (55%)
Query: 56 VLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA 114
VL+++ L +L++ V NLS EEL ++ C+ LIVRS TKVT +V ++A
Sbjct: 9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVI-NAA 67
Query: 115 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS 174
+L+VVGRAG G+DNVDL AAT G LV+N P N+++AAE ++ +AR I QA AS
Sbjct: 68 EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 127
Query: 175 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
+K GKW R K++G L GKTL ++G G++G EVA R + GM + +DP + A + G
Sbjct: 128 MKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDPIISPEVAASFG 187
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
V + EE DFI++H PL P+T+ + ND F + KKGVR+VN ARGG+VDE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 295 ALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTXXXXXXXXXXXXXXXXX 354
AL SG + AALDVFTEEPP +D LV HENV PHLGAST
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 355 LKGELAATAVNAPMVPAEVISELAPFVTLAEKXXXXXXXXXXXXXXXXXXXXXXXXXRGP 414
+KG+ VNA + + P++ LAE +
Sbjct: 307 VKGKSLTGVVNAQALTSAFSPHTKPWIGLAEAMGTLMHAWAGSPKGTIQVVTQGTSLK-- 364
Query: 415 DDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVT 456
+ T L A+I + E VNLVNA + K+ GL VT
Sbjct: 365 -NAGTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVT 405
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O29445 | SERA_ARCFU | 1, ., 1, ., 1, ., 9, 5 | 0.4007 | 0.8756 | 0.9886 | yes | no |
| O04130 | SERA_ARATH | 1, ., 1, ., 1, ., 9, 5 | 0.7753 | 0.9126 | 0.8701 | no | no |
| P0A544 | SERA_MYCTU | 1, ., 1, ., 1, ., 9, 5 | 0.3794 | 0.8521 | 0.9602 | yes | no |
| P0A545 | SERA_MYCBO | 1, ., 1, ., 1, ., 9, 5 | 0.3794 | 0.8521 | 0.9602 | yes | no |
| O33116 | SERA_MYCLE | 1, ., 1, ., 1, ., 9, 5 | 0.4136 | 0.8033 | 0.9053 | yes | no |
| P35136 | SERA_BACSU | 1, ., 1, ., 1, ., 9, 5 | 0.3754 | 0.8521 | 0.9657 | yes | no |
| O27051 | SERA_METTH | 1, ., 1, ., 1, ., 9, 5 | 0.4010 | 0.8773 | 0.9942 | yes | no |
| Q58424 | SERA_METJA | 1, ., 1, ., 1, ., 9, 5 | 0.4194 | 0.8655 | 0.9828 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.976 |
| 4th Layer | 1.1.1.95 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | gw1.II.1474.1 | hypothetical protein (543 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.V.3607.1 | phosphoserine transaminase (EC-2.6.1.52) (378 aa) | • | • | • | • | 0.966 | ||||
 | fgenesh4_pg.C_scaffold_1557000001 | Predicted protein (206 aa) | • | • | 0.453 | ||||||
 | gw1.1441.1.1 | annotation not avaliable (142 aa) | • | 0.417 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 595 | |||
| PRK13581 | 526 | PRK13581, PRK13581, D-3-phosphoglycerate dehydroge | 0.0 | |
| TIGR01327 | 525 | TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas | 1e-179 | |
| cd12173 | 304 | cd12173, PGDH_4, Phosphoglycerate dehydrogenases, | 1e-157 | |
| cd05303 | 301 | cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P | 1e-114 | |
| COG0111 | 324 | COG0111, SerA, Phosphoglycerate dehydrogenase and | 1e-111 | |
| cd12172 | 306 | cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat | 1e-108 | |
| pfam00389 | 312 | pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy | 2e-97 | |
| cd05301 | 309 | cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr | 7e-94 | |
| cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 3e-93 | |
| cd05299 | 312 | cd05299, CtBP_dh, C-terminal binding protein (CtBP | 6e-93 | |
| COG1052 | 324 | COG1052, LdhA, Lactate dehydrogenase and related d | 5e-89 | |
| cd12175 | 311 | cd12175, 2-Hacid_dh_11, Putative D-isomer specific | 1e-86 | |
| cd12174 | 305 | cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat | 6e-84 | |
| cd12171 | 310 | cd12171, 2-Hacid_dh_10, Putative D-isomer specific | 6e-84 | |
| cd12178 | 317 | cd12178, 2-Hacid_dh_13, Putative D-isomer specific | 1e-82 | |
| cd12177 | 321 | cd12177, 2-Hacid_dh_12, Putative D-isomer specific | 4e-82 | |
| cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 2e-78 | |
| pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 1e-76 | |
| PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 5e-71 | |
| cd12176 | 304 | cd12176, PGDH_3, Phosphoglycerate dehydrogenases, | 9e-70 | |
| cd01619 | 323 | cd01619, LDH_like, D-Lactate and related Dehydroge | 1e-69 | |
| cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 4e-69 | |
| cd12168 | 321 | cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l | 3e-66 | |
| cd12179 | 306 | cd12179, 2-Hacid_dh_14, Putative D-isomer specific | 1e-65 | |
| cd12187 | 329 | cd12187, LDH_like_1, D-Lactate and related Dehydro | 5e-63 | |
| PRK11790 | 409 | PRK11790, PRK11790, D-3-phosphoglycerate dehydroge | 1e-62 | |
| cd12157 | 318 | cd12157, PTDH, Thermostable Phosphite Dehydrogenas | 2e-61 | |
| cd12167 | 330 | cd12167, 2-Hacid_dh_8, Putative D-isomer specific | 9e-61 | |
| cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 4e-59 | |
| cd12183 | 328 | cd12183, LDH_like_2, D-Lactate and related Dehydro | 7e-56 | |
| cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 1e-55 | |
| cd12186 | 329 | cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr | 3e-55 | |
| cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 6e-50 | |
| PRK15409 | 323 | PRK15409, PRK15409, bifunctional glyoxylate/hydrox | 3e-49 | |
| cd12156 | 301 | cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, | 5e-49 | |
| cd12155 | 314 | cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2 | 2e-48 | |
| PRK06487 | 317 | PRK06487, PRK06487, glycerate dehydrogenase; Provi | 5e-47 | |
| cd12158 | 343 | cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh | 1e-46 | |
| PRK08410 | 311 | PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P | 2e-46 | |
| cd05302 | 348 | cd05302, FDH, NAD-dependent Formate Dehydrogenase | 3e-45 | |
| PRK07574 | 385 | PRK07574, PRK07574, formate dehydrogenase; Provisi | 4e-44 | |
| PRK06932 | 314 | PRK06932, PRK06932, glycerate dehydrogenase; Provi | 5e-44 | |
| PLN02928 | 347 | PLN02928, PLN02928, oxidoreductase family protein | 2e-40 | |
| cd12185 | 322 | cd12185, HGDH_LDH_like, Putative Lactate dehydroge | 5e-40 | |
| cd12164 | 306 | cd12164, GDH_like_2, Putative glycerate dehydrogen | 2e-36 | |
| cd12184 | 330 | cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro | 5e-36 | |
| cd12180 | 308 | cd12180, 2-Hacid_dh_15, Putative D-isomer specific | 6e-36 | |
| PRK00257 | 381 | PRK00257, PRK00257, erythronate-4-phosphate dehydr | 8e-36 | |
| PLN02306 | 386 | PLN02306, PLN02306, hydroxypyruvate reductase | 4e-35 | |
| PLN03139 | 386 | PLN03139, PLN03139, formate dehydrogenase; Provisi | 4e-33 | |
| PRK08605 | 332 | PRK08605, PRK08605, D-lactate dehydrogenase; Valid | 5e-33 | |
| cd12166 | 300 | cd12166, 2-Hacid_dh_7, Putative D-isomer specific | 9e-31 | |
| PRK06436 | 303 | PRK06436, PRK06436, glycerate dehydrogenase; Provi | 2e-30 | |
| PRK12480 | 330 | PRK12480, PRK12480, D-lactate dehydrogenase; Provi | 4e-29 | |
| cd12159 | 303 | cd12159, 2-Hacid_dh_2, Putative D-isomer specific | 7e-29 | |
| cd12163 | 334 | cd12163, 2-Hacid_dh_5, Putative D-isomer specific | 1e-27 | |
| cd12160 | 310 | cd12160, 2-Hacid_dh_3, Putative D-isomer specific | 6e-22 | |
| cd04902 | 73 | cd04902, ACT_3PGDH-xct, C-terminal ACT (regulatory | 2e-21 | |
| PRK15438 | 378 | PRK15438, PRK15438, erythronate-4-phosphate dehydr | 4e-20 | |
| cd12154 | 310 | cd12154, FDH_GDH_like, Formate/glycerate dehydroge | 5e-18 | |
| cd04879 | 71 | cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD include | 3e-17 | |
| PRK15469 | 312 | PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr | 5e-16 | |
| cd04903 | 71 | cd04903, ACT_LSD, C-terminal ACT domain of the L-s | 5e-12 | |
| smart00997 | 162 | smart00997, AdoHcyase_NAD, S-adenosyl-L-homocystei | 4e-07 | |
| COG0499 | 420 | COG0499, SAM1, S-adenosylhomocysteine hydrolase [C | 5e-06 | |
| pfam01842 | 66 | pfam01842, ACT, ACT domain | 2e-05 | |
| cd02116 | 60 | cd02116, ACT, ACT domains are commonly involved in | 5e-05 | |
| cd00401 | 402 | cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N | 9e-05 | |
| TIGR00936 | 407 | TIGR00936, ahcY, adenosylhomocysteinase | 1e-04 | |
| PRK05476 | 425 | PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr | 1e-04 | |
| cd12170 | 294 | cd12170, 2-Hacid_dh_9, Putative D-isomer specific | 0.001 | |
| pfam05221 | 430 | pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy | 0.002 | |
| PRK08306 | 296 | PRK08306, PRK08306, dipicolinate synthase subunit | 0.003 |
| >gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 628 bits (1622), Expect = 0.0
Identities = 263/546 (48%), Positives = 346/546 (63%), Gaps = 24/546 (4%)
Query: 54 PTVLVAEKLGEAGLDVLKNFA--NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFE 111
VLV++ + AGL++LK+ VD L EEL I DALIVRS TKVT EV E
Sbjct: 1 MKVLVSDPISPAGLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLE 60
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+ A LKV+GRAGVG+DNVD+ AAT G +VVNAPT NTI+AAEH IAL+ A+ARNI QA
Sbjct: 61 A-AKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQA 119
Query: 172 DASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRAR 231
AS+KAGKW+R K++GV L GKTL ++G G++G+EVA+RAK GM VIA+DPY +RA
Sbjct: 120 HASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAA 179
Query: 232 ATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
GV LVS +E ++ ADFI+LH PLTP T + E KMK GVRI+N ARGG++DE A
Sbjct: 180 QLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAA 239
Query: 292 LVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAV 351
L AL SG ++ AALDVF +EPP DS L NV VTPHLGAST EAQE VAI++AE V
Sbjct: 240 LAEALKSGKVAGAALDVFEKEPP-TDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQV 298
Query: 352 IGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASA 411
I AL+G AVN P + AE +L P++ LAEKLG LA QL +KSV+++Y
Sbjct: 299 IDALRGGPVPNAVNLPSITAEEAEKLKPYLDLAEKLGSLAAQLA--DGPIKSVEITY--- 353
Query: 412 RGP-DDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPL 470
RG + DT L A KG++ P+ VN VNA +AK+RG+ V E + N
Sbjct: 354 RGELAEEDTEPLTAAALKGLLSPVLGERVNYVNAPLLAKERGIEVEESKSEESPDYSN-- 411
Query: 471 EFIQVQIANVESKFGSAISDIGDIRVEGRV-KDGKPHLTKVGSFGVDVSLEGSIILCRQV 529
I V + +D G+ V G V DG+P + ++ + VD EG +++ R
Sbjct: 412 -LITV----------TVTTDDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNR 460
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEE 589
D+PG+IGKVG+LLG+ +N+ M +GR +A+M + VD+ EVL+++ P I
Sbjct: 461 DRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILS 520
Query: 590 FVFLKL 595
++L
Sbjct: 521 AKAVEL 526
|
Length = 526 |
| >gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Score = 517 bits (1333), Expect = e-179
Identities = 247/549 (44%), Positives = 338/549 (61%), Gaps = 34/549 (6%)
Query: 56 VLVAEKLGEAGLDVLKN-FANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA 114
VL+A+ + G+D+L++ VD LS EEL I DALIVRS TKVT EV + A
Sbjct: 2 VLIADPISPDGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAA-A 60
Query: 115 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS 174
+LKV+GRAGVG+DN+D+ AAT G LVVNAPT NTI+AAEH +A+L A ARNI QADAS
Sbjct: 61 PKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADAS 120
Query: 175 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
+K G+W R ++G L GKTL V+G G++G+ VA+RAK GM V+A+DPY +RA G
Sbjct: 121 LKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLG 180
Query: 235 VGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293
V LV +E ++ ADFI++H PLTP T + E KMKKGV IVN ARGG++DE AL
Sbjct: 181 VELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALY 240
Query: 294 RALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIG 353
AL+ G + AALDVF +EPP D+ L +NV TPHLGAST EAQE VA ++AE V+
Sbjct: 241 EALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLD 299
Query: 354 ALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARG 413
ALKG AVNAP + A+V+ +L P++ LAEKLG LA QL+ G V+SV+V+Y RG
Sbjct: 300 ALKGLPVPNAVNAPGIDADVMEKLKPYLDLAEKLGKLAGQLLDG--AVQSVEVTY---RG 354
Query: 414 P-DDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEF 472
++ L KG++ P+ VN+VNA +AK+RG+ V E +
Sbjct: 355 ELATENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERGITVEESK------------- 401
Query: 473 IQVQIANVESKFGSAIS-----DIGDIRVEGRV-KDGKPHLTKVGSFGVDVSLEGSIILC 526
+ + + +S D G + V G V P + ++ F VD+ EG +++
Sbjct: 402 -----SESSPDYKNYLSVTVTGDSGTVSVAGTVFGGFSPRIVEIDGFHVDLEPEGIMLII 456
Query: 527 RQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPA 586
+D+PG+IGKVG+LLG +N+ M +GR +A+M + +D+ EVL++I P
Sbjct: 457 LHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPD 516
Query: 587 IEEFVFLKL 595
I + L
Sbjct: 517 ILSVFVVDL 525
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525 |
| >gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 452 bits (1166), Expect = e-157
Identities = 179/304 (58%), Positives = 220/304 (72%), Gaps = 2/304 (0%)
Query: 56 VLVAEKLGEAGLDVLKNF-ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA 114
VLV + + E GL++L+ VD + LS EEL I+ DALIVRS TKVT EV E+ A
Sbjct: 2 VLVTDPIDEEGLELLREAGIEVDVAPGLSEEELLAIIADADALIVRSATKVTAEVIEA-A 60
Query: 115 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS 174
RLKV+GRAGVG+DN+D+ AAT G LVVNAP ANTI+ AEH IAL+ A+ARNI QADAS
Sbjct: 61 PRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIPQADAS 120
Query: 175 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
++AGKW R K++GV L GKTL ++G G++G EVARRA+ GM V+A+DPY A+RA A G
Sbjct: 121 LRAGKWDRKKFMGVELRGKTLGIVGLGRIGREVARRARAFGMKVLAYDPYISAERAAAGG 180
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
V LVS +E ++ ADFISLH PLTP T + N E KMK G ++N ARGG+VDE AL
Sbjct: 181 VELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGGIVDEAALAD 240
Query: 295 ALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGA 354
AL SG I+ AALDVF +EPP DS L+ NV +TPHLGAST EAQE VA++ AE V+
Sbjct: 241 ALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGASTEEAQERVAVDAAEQVLAV 300
Query: 355 LKGE 358
L GE
Sbjct: 301 LAGE 304
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 341 bits (878), Expect = e-114
Identities = 144/301 (47%), Positives = 201/301 (66%), Gaps = 3/301 (0%)
Query: 56 VLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA 114
+L+ + + E ++ L+ VD ++ EEL KI D LIVRS TKVT+EV ++ A
Sbjct: 3 ILITDGIDEIAIEKLEEAGFEVDYEPLIAKEELLEKIKDYDVLIVRSRTKVTKEVIDA-A 61
Query: 115 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS 174
LK++ RAGVG+DN+D+ A + G V+N P A++ + AE I L+ ++AR I +A+
Sbjct: 62 KNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANRE 121
Query: 175 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
+K GKW + KY G+ L GKTL ++GFG++G EVA+ A+ LGMNVIA+DPY + ++A G
Sbjct: 122 MKLGKWNKKKYKGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQAVELG 181
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
V VS EE + +DFISLH+PLTP T M N + MK G I+N +RGGV+DEEAL+
Sbjct: 182 VKTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLE 241
Query: 295 ALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGA 354
AL SG ++ AALDVF EPP SKL+ NV++TPH+GAST EAQE + E+A +I
Sbjct: 242 ALKSGKLAGAALDVFENEPP-PGSKLLELPNVSLTPHIGASTKEAQERIGEELANKIIEF 300
Query: 355 L 355
L
Sbjct: 301 L 301
|
Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301 |
| >gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 335 bits (862), Expect = e-111
Identities = 155/325 (47%), Positives = 200/325 (61%), Gaps = 7/325 (2%)
Query: 51 TSKPTVLVAEKLGEAGLDVLKNFANVDCS--YNLSPEELCTKISLCDALIVRSGTKVTRE 108
VLV + L L+ L +V+ +L EEL ++ DALIV S T VT E
Sbjct: 1 KMMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEE 59
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNI 168
V + A LK +GRAG G+DN+DL AAT+ G LVVNAP N I+ AE +ALL A+AR I
Sbjct: 60 VLAA-APNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRI 118
Query: 169 AQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD 228
ADAS + G+W R + G L GKT+ ++G G++G VA+R K GM VI +DPY+ +
Sbjct: 119 PDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE 178
Query: 229 RARATGV-GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287
RA GV G+ S +E ++ AD ++LH+PLTP T + N E KMK G ++N ARGGVV
Sbjct: 179 RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVV 238
Query: 288 DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEI 347
DE+AL+ ALDSG I+ AALDVF EEP DS L NV +TPH+G ST EAQE VA +
Sbjct: 239 DEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIV 298
Query: 348 AEAVIGALKGELAATAVNAPMVPAE 372
AE ++ L G NAP V E
Sbjct: 299 AENIVRYLAGG--PVVNNAPEVDLE 321
|
Length = 324 |
| >gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 326 bits (838), Expect = e-108
Identities = 140/298 (46%), Positives = 179/298 (60%), Gaps = 10/298 (3%)
Query: 60 EKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGT-KVTREVFESSAGRLK 118
E L AG +V+ N L+ EEL + D +I G +T EV + A RLK
Sbjct: 18 ELLEAAGFEVVLN----PLGRPLTEEELIELLKDADGVIA--GLDPITEEVLAA-APRLK 70
Query: 119 VVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAG 178
V+ R GVG DN+DL AA + G +V N P AN+ + AE I L+ A+AR I QAD V+AG
Sbjct: 71 VISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADREVRAG 130
Query: 179 KWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV 238
W ++ VG L GKTL ++G G++G VARR G GM V+A+DPY + A+ GV V
Sbjct: 131 GW--DRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDPYPDEEFAKEHGVEFV 188
Query: 239 SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298
S EE + +DFISLH+PLTP T + N MK G ++N ARGG+VDEEAL AL S
Sbjct: 189 SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTARGGLVDEEALYEALKS 248
Query: 299 GIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALK 356
G I+ AALDVF EEPP DS L+ NV +TPH+GAST EA + A+ VI L
Sbjct: 249 GRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAVLRMGTMAAQNVIDVLA 306
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306 |
| >gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Back alignment and domain information |
|---|
Score = 299 bits (768), Expect = 2e-97
Identities = 134/313 (42%), Positives = 177/313 (56%), Gaps = 4/313 (1%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAG 115
VL+ + L L++LK V+ L EEL DALIVRS T VT EV E+ A
Sbjct: 1 VLITDPLRPEELELLKEGGEVEVHDELLTEELLEAAKDADALIVRSTTPVTAEVLEA-AP 59
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
LKV+ R GVG+DN+DL AATE G LV N P +T + AE + L+ A+AR I +ADASV
Sbjct: 60 GLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASV 119
Query: 176 KAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGV 235
+AG W++ +G+ L GKTL V+G G +G A AK LGM V+A+DPY +RA GV
Sbjct: 120 RAGDWKKGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVVAYDPYPNPERAEEGGV 179
Query: 236 GLVSFEEAIST---ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEAL 292
++ + + +D + P T + M K +N ARGG V EEA
Sbjct: 180 EVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAA 239
Query: 293 VRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVI 352
+ AL I+ AALDV EEPP +S L+ NV +TPH+ +T EAQE +A E AE ++
Sbjct: 240 LDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENMAEEAAENLL 299
Query: 353 GALKGELAATAVN 365
LKG AVN
Sbjct: 300 AFLKGGTPPNAVN 312
|
This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312 |
| >gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH) | Back alignment and domain information |
|---|
Score = 290 bits (744), Expect = 7e-94
Identities = 120/310 (38%), Positives = 168/310 (54%), Gaps = 7/310 (2%)
Query: 54 PTVLVAEKLGEAGLDVLKNFANV---DCSYNLSPEELCTKISLCDALIVRSGTKVTREVF 110
P VLV +L E L +L+ V D L EEL D L+ K+ E+
Sbjct: 1 PKVLVTRRLPEEALALLREGFEVEVWDEDRPLPREELLEAAKGADGLLCTLTDKIDAELL 60
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
++ A LKV+ VG D++D+ AA G V N P T A A+ ALL A AR + +
Sbjct: 61 DA-APPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAARRVVE 119
Query: 171 ADASVKAGKWQRNK---YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA 227
D V+AG+W+ +G L GKTL ++G G++G VARRAKG GM ++ H+ +
Sbjct: 120 GDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGMKILYHNRSRKP 179
Query: 228 DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287
+ G VS +E ++ +DF+SLH PLTP T + N E MK ++N ARGGVV
Sbjct: 180 EAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGVV 239
Query: 288 DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEI 347
DE+ALV AL SG I+ A LDVF EP D L+ NV + PH+G++T E + +A
Sbjct: 240 DEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSATVETRTAMAELA 299
Query: 348 AEAVIGALKG 357
A+ ++ L G
Sbjct: 300 ADNLLAVLAG 309
|
D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309 |
| >gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
|---|
Score = 287 bits (738), Expect = 3e-93
Identities = 124/309 (40%), Positives = 174/309 (56%), Gaps = 11/309 (3%)
Query: 45 VLATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTK 104
VL P L E L G +V+ + +L +EL ++ DALIV S T
Sbjct: 2 VLVLEPLFPPEAL--EALEATGFEVI-------VADDLLADELEALLADADALIVSSTTP 52
Query: 105 VTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAM 164
VT EV A +LK + AG G+DN+DL AA + G V N P AN A AEH + LL A+
Sbjct: 53 VTAEVLAK-APKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLAL 111
Query: 165 ARNIAQADASVKAGK-WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDP 223
R + +ADA+V+ G W + G L GKT+ ++G G++G VA+R + GM V+ +D
Sbjct: 112 LRRLPRADAAVRRGWGWLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDR 171
Query: 224 YAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283
+ + G +VS +E ++ +D + LH+PLTP T + N+E MK G +VN AR
Sbjct: 172 TRKPEPEEDLGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTAR 231
Query: 284 GGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGV 343
GG+VDE+AL+RAL SG I+ AALDVF EP D L+ NV +TPH+ T EA+E +
Sbjct: 232 GGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERM 291
Query: 344 AIEIAEAVI 352
A E +
Sbjct: 292 AEIAVENLE 300
|
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
| >gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor | Back alignment and domain information |
|---|
Score = 287 bits (738), Expect = 6e-93
Identities = 131/298 (43%), Positives = 177/298 (59%), Gaps = 10/298 (3%)
Query: 62 LGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVG 121
L EAG+++ VD + +EL + DAL+V+ VT EV E+ RLKV+
Sbjct: 20 LEEAGVEL------VDAQSR-TEDELIEAAADADALLVQY-APVTAEVIEALP-RLKVIV 70
Query: 122 RAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQ 181
R GVG+DNVD++AATE G V N P T A+H +AL+ A+AR + D +V+AG W
Sbjct: 71 RYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWD 130
Query: 182 RNKYVGV-SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSF 240
+ L G TL ++GFG++G VA+RAK G VIA+DPY A GV +VS
Sbjct: 131 WTVGGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAYDPYVPDGVAALGGVRVVSL 190
Query: 241 EEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGI 300
+E ++ +D +SLH PLTP T + + EA MK G +VN ARGG+VDE AL RAL SG
Sbjct: 191 DELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEAALARALKSGR 250
Query: 301 ISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGE 358
I+ AALDV EEPP DS L+ NV +TPH + E+ + + AE V+ L+GE
Sbjct: 251 IAGAALDVLEEEPPPADSPLLSAPNVILTPHAAWYSEESLAELRRKAAEEVVRVLRGE 308
|
The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312 |
| >gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 278 bits (713), Expect = 5e-89
Identities = 123/323 (38%), Positives = 167/323 (51%), Gaps = 10/323 (3%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPE--ELCTKISLCDALIVRSGTKVTREVF 110
K VL KL L+ LK V+ + EL ++ DA+I ++ EV
Sbjct: 2 KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVL 61
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
E LK++ G DNVDL AA E G V N P +T A AEH +AL+ A+AR I +
Sbjct: 62 EK-LPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHE 120
Query: 171 ADASVKAGKWQRNKYV----GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ 226
D V+ G W + G L GKTL ++G G++G VARR KG GM V+ +D
Sbjct: 121 GDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN 180
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ + G V +E ++ +D ISLH PLTP T + N E KMK G +VN ARGG+
Sbjct: 181 PEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL 240
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSKL---VLHENVTVTPHLGASTTEAQEGV 343
VDE+AL+ AL SG I+ A LDVF EP D L NV +TPH+ ++T EA++ +
Sbjct: 241 VDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAM 300
Query: 344 AIEIAEAVIGALKGELAATAVNA 366
A E + G + VN
Sbjct: 301 AELALENLEAFFDGGVPPNEVNP 323
|
Length = 324 |
| >gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 271 bits (696), Expect = 1e-86
Identities = 107/311 (34%), Positives = 168/311 (54%), Gaps = 7/311 (2%)
Query: 55 TVLVAEKLGEAGLDVLKNFANVDCSYNL----SPEELCTKISLCDALIVRSGTKVTREVF 110
VL ++L+ + +E ++ D L+ + E+
Sbjct: 1 KVLFLGPEFPDAEELLRALLPPAPGVEVVTAAELDEEAALLADADVLVPGMRKVIDAEL- 59
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
++A RL+++ + GVG+D VDL AAT G V N P N + AEH + L+ A+ R + +
Sbjct: 60 LAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRRLPE 119
Query: 171 ADASVKAGKWQRNKY-VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD- 228
AD ++AG+W R + L GKT+ ++G G +G VARR +G G+ VI +D + +
Sbjct: 120 ADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDPEA 179
Query: 229 RARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVD 288
+ GV V +E ++ +D +SLH+PLTP T + E MK G ++N ARGG+VD
Sbjct: 180 EEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTARGGLVD 239
Query: 289 EEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIA 348
EEAL+ AL SG ++ A LDVF +EP D L+ +NV +TPH+ T E+ + +A +A
Sbjct: 240 EEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAGVTDESYQRMAAIVA 299
Query: 349 EAVIGALKGEL 359
E + L+GE
Sbjct: 300 ENIARLLRGEP 310
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311 |
| >gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 6e-84
Identities = 126/323 (39%), Positives = 172/323 (53%), Gaps = 31/323 (9%)
Query: 55 TVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA 114
+L A K+ + GL+ K Y + E+ DALIVRS K+ F S
Sbjct: 2 KILTANKISKKGLERFK-----KDKYEVK-EDALED---PDALIVRS-DKLHDMDFAPS- 50
Query: 115 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA--- 171
LK + RAG G++N+D+ AA++ G +V N P AN A AE IA++ A++RNI QA
Sbjct: 51 --LKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQAIKW 108
Query: 172 ------DASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225
D K + + ++VG L GKTL V+G G +G VA A LGM VI +DPY
Sbjct: 109 VTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANAALALGMKVIGYDPYL 168
Query: 226 QADRARATGVGLV---SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282
+ A V + S EE ++TAD+I+LH+PLT T + N E KMK G ++N A
Sbjct: 169 SVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLINAELLAKMKPGAILLNFA 228
Query: 283 RGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEG 342
RG +VDEEAL+ ALD G + + F E PA NV TPHLGAST EA+E
Sbjct: 229 RGEIVDEEALLEALDEGKL-GGYVTDFPE--PALLGH---LPNVIATPHLGASTEEAEEN 282
Query: 343 VAIEIAEAVIGALKGELAATAVN 365
A+ A ++ L+ +VN
Sbjct: 283 CAVMAARQIMDFLETGNITNSVN 305
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305 |
| >gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 6e-84
Identities = 112/262 (42%), Positives = 154/262 (58%), Gaps = 10/262 (3%)
Query: 84 PEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVG--RAGVGIDNVDLSAATEHGCL 141
EEL + D LI VT++V E+ A +LK++G R G +NVD+ AATE G
Sbjct: 37 EEELLEALKDADILITHFAP-VTKKVIEA-APKLKLIGVCRGGP--ENVDVEAATERGIP 92
Query: 142 VVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKY----VGVSLVGKTLAV 197
V+N P N A AE + L+ A RNIA+A A++K G+W+++ Y G L GKT+ +
Sbjct: 93 VLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGI 152
Query: 198 MGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLT 257
+GFG +G VA+R K G V+ +DPY ++ A GV VS EE + +D +SLH LT
Sbjct: 153 VGFGAIGRRVAKRLKAFGAEVLVYDPYVDPEKIEADGVKKVSLEELLKRSDVVSLHARLT 212
Query: 258 PATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD 317
P T M E F MK +N AR G+VDE+AL+ AL+ G I AALDVF EEP D
Sbjct: 213 PETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEPLPAD 272
Query: 318 SKLVLHENVTVTPHLGASTTEA 339
L+ +NVT+TPH+ +T +
Sbjct: 273 HPLLKLDNVTLTPHIAGATRDV 294
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 1e-82
Identities = 117/318 (36%), Positives = 175/318 (55%), Gaps = 9/318 (2%)
Query: 55 TVLVAEKLGEAGLDVLKNFANVDCS---YNLSPEELCTKISLCDALIVRSGTKVTREVFE 111
VLV + + L+ L+ V +S EEL +I+ DALI T V +E+ +
Sbjct: 2 KVLVTGWIPKEALEELEENFEVTYYDGLGLISKEELLERIADYDALITPLSTPVDKEIID 61
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+ A LK++ G G DN+D+ A E G V N P +T AE L+ A+AR IA+
Sbjct: 62 A-AKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEG 120
Query: 172 DASVKAGK---WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY-AQA 227
D ++ G W ++G L GKTL ++G G++G VARRAK GM ++ ++ +
Sbjct: 121 DRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMKILYYNRHRLSE 180
Query: 228 DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287
+ + G V +E + +DF+SLH P TP T + + AF MK ++N ARG +V
Sbjct: 181 ETEKELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLV 240
Query: 288 DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEI 347
DE+ALV AL +G I+ AALDVF EP +L +NV +TPH+G +T EA++ +A E
Sbjct: 241 DEKALVDALKTGEIAGAALDVFEFEPEVSP-ELKKLDNVILTPHIGNATVEARDAMAKEA 299
Query: 348 AEAVIGALKGELAATAVN 365
A+ +I L+G+ VN
Sbjct: 300 ADNIISFLEGKRPKNIVN 317
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317 |
| >gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 259 bits (665), Expect = 4e-82
Identities = 126/309 (40%), Positives = 176/309 (56%), Gaps = 9/309 (2%)
Query: 60 EKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKV 119
++L + G V ++S + L K+ D +I +E FE LK+
Sbjct: 19 QRLKKIGYVD---RFEVP--PDISGKALAEKLKGYDIIIASVTPNFDKEFFEY-NDGLKL 72
Query: 120 VGRAGVGIDNVDLSAATEHGCLVVNAPTA-NTIAAAEHGIALLTAMARNIAQADASVKAG 178
+ R G+G DNVDL AATEHG +V P A A AEH +AL+ + R I QA +VK G
Sbjct: 73 IARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVLRKINQASEAVKEG 132
Query: 179 KWQ-RNKYVGVSLVGKTLAVMGFGKVGTEVARRAK-GLGMNVIAHDPYAQADRARATGVG 236
KW R +VG L GKT+ ++G+G +G+ VA K G V+A+DPY + + G
Sbjct: 133 KWTERANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDPYVSEEVIKKKGAK 192
Query: 237 LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRAL 296
VS EE ++ +D ISLH PLT T M N++AF KMKKGV +VN ARG ++DEEAL+ AL
Sbjct: 193 PVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEAL 252
Query: 297 DSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALK 356
SG I+ A LDV EEP D L+ +ENV +TPH+GA T E+ G+ ++ + + L
Sbjct: 253 KSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIGAYTYESLYGMGEKVVDDIEDFLA 312
Query: 357 GELAATAVN 365
G+ +N
Sbjct: 313 GKEPKGILN 321
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321 |
| >gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 2e-78
Identities = 108/282 (38%), Positives = 158/282 (56%), Gaps = 13/282 (4%)
Query: 67 LDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVG 126
D L+ + SPEE+ +I D +I + + EV LK++G G
Sbjct: 18 WDPLEFLGELTVYDRTSPEEVVERIKDADIVIT-NKVVLDAEVLAQ-LPNLKLIGVLATG 75
Query: 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN--- 183
+NVDL+AA E G V N P +T + A+H ALL A+AR +A + VKAG+WQ++
Sbjct: 76 YNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQKSPDF 135
Query: 184 ---KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSF 240
Y + L GKTL ++G+G +G VAR A+ GM V+ + G VS
Sbjct: 136 CFWDYPIIELAGKTLGIIGYGNIGQAVARIARAFGMKVLFAERKGAPPL----REGYVSL 191
Query: 241 EEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGI 300
+E ++ +D ISLH PLTP T + N E KMK G ++N ARGG+VDE+AL AL+SG
Sbjct: 192 DELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVDEQALADALNSGK 251
Query: 301 ISQAALDVFTEEPPAKDSKLV-LHENVTVTPHLGASTTEAQE 341
I+ A LDV ++EPP D+ L+ N+ +TPH+ ++ EA++
Sbjct: 252 IAGAGLDVLSQEPPRADNPLLKAAPNLIITPHIAWASREARQ 293
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
| >gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 1e-76
Identities = 83/176 (47%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Query: 158 IALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMN 217
+ALL A+AR I +AD V+AG+W+ + +G L GKT+ ++G G++G VARR K GM
Sbjct: 1 LALLLALARRIPEADRQVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMK 60
Query: 218 VIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVR 277
VIA+D Y + A A G VS +E ++ +D +SLH+PLTP T + N E MK G
Sbjct: 61 VIAYDRYPK-AEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAI 119
Query: 278 IVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG 333
++N ARGG+VDE+AL+ AL SG I+ AALDVF EP D L+ NV +TPH+
Sbjct: 120 LINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175
|
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
| >gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 5e-71
Identities = 125/328 (38%), Positives = 187/328 (57%), Gaps = 12/328 (3%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSP---EELCTKISLCDALIVRSGTKVTRE 108
KP V + ++ E G+++L+ V+ + E L K+ DAL+ ++ E
Sbjct: 1 MKPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCE 60
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNI 168
VFE+ A RL++V VG DN+D+ AT G V N P T A A+ ALL A AR +
Sbjct: 61 VFEA-APRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRL 119
Query: 169 AQADASVKAGKWQRNK-------YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH 221
+AD V++G+W+R ++G + GKT+ ++GFG++G VARRAKG GM ++ +
Sbjct: 120 VEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYY 179
Query: 222 DPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281
+ + + G EE + +DF+SLH+PLT T M N+E MK +VN
Sbjct: 180 SRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNT 239
Query: 282 ARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQE 341
ARG VVD +ALV+AL G I+ A LDVF EE P + +L +NV + PH+G++T EA+E
Sbjct: 240 ARGKVVDTKALVKALKEGWIAGAGLDVFEEE-PYYNEELFSLKNVVLAPHIGSATFEARE 298
Query: 342 GVAIEIAEAVIGALKGELAATAVNAPMV 369
G+A +AE +I +GE+ T VN +V
Sbjct: 299 GMAELVAENLIAFKRGEVPPTLVNREVV 326
|
Length = 333 |
| >gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 9e-70
Identities = 104/277 (37%), Positives = 158/277 (57%), Gaps = 11/277 (3%)
Query: 82 LSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCL 141
L +EL + L +RS T++T EV E+ A +L +G +G + VDL AA + G
Sbjct: 31 LDEDELIEALKDVHLLGIRSKTQLTEEVLEA-APKLLAIGCFCIGTNQVDLDAAAKRGIP 89
Query: 142 VVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG 201
V NAP +NT + AE I + +AR + +A+ G W ++ + GKTL ++G+G
Sbjct: 90 VFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRGIWNKSATGSHEVRGKTLGIIGYG 149
Query: 202 KVGTEVARRAKGLGMNVIAHDPYAQADRARATG--VGLVSFEEAISTADFISLHMPLTPA 259
+G++++ A+ LGM VI +D G + S EE ++ ADF++LH+P TP+
Sbjct: 150 HIGSQLSVLAEALGMRVIFYD----IAEKLPLGNARQVSSLEELLAEADFVTLHVPATPS 205
Query: 260 TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD-- 317
T M E +MKKG ++N +RG VVD +AL AL SG ++ AA+DVF EEP +
Sbjct: 206 TKNMIGAEEIAQMKKGAILINASRGTVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEP 265
Query: 318 --SKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVI 352
S L NV +TPH+G ST EAQE + +E+A ++
Sbjct: 266 FSSPLQGLPNVILTPHIGGSTEEAQENIGLEVAGKLV 302
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 227 bits (582), Expect = 1e-69
Identities = 115/295 (38%), Positives = 154/295 (52%), Gaps = 15/295 (5%)
Query: 78 CSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATE 137
+Y L+ +E DA++ K+ E+ + + G LK + G DN+DL A E
Sbjct: 30 VTYLLNDDETAELAKGADAILTAFTDKIDAELLDKAPG-LKFISLRATGYDNIDLDYAKE 88
Query: 138 HGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAV 197
G V N P + A AEH IAL+ A+ RN D K Q +G L +T+ V
Sbjct: 89 LGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQDLQDAGVIGRELEDQTVGV 148
Query: 198 MGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLT 257
+G GK+G VA+RAKG GM VIA+DP+ + GV VS EE +D ISLH+PLT
Sbjct: 149 VGTGKIGRAVAQRAKGFGMKVIAYDPFRNPELE-DKGVKYVSLEELFKNSDIISLHVPLT 207
Query: 258 PATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP--- 314
P M N+EAF MKKGV I+N ARG +VD EAL+ ALDSG I A LDV +E P
Sbjct: 208 PENHHMINEEAFKLMKKGVIIINTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLL 267
Query: 315 ----------AKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGEL 359
A ++ L NV +TPH T +A + + E ++ L+GE
Sbjct: 268 KDLEGEIFKDALNALLGRRPNVIITPHTAFYTDDALKNMVEISCENIVDFLEGEE 322
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323 |
| >gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
|---|
Score = 225 bits (577), Expect = 4e-69
Identities = 107/278 (38%), Positives = 152/278 (54%), Gaps = 6/278 (2%)
Query: 82 LSPEELCTKISLCDALIV-RSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGC 140
L + L +++ DA+++ R T + E LK++ G+ ++DL+AA E G
Sbjct: 35 LDEDALAERLAPFDAIVLMRERTPFPAALLER-LPNLKLLVTTGMRNASIDLAAAKERGI 93
Query: 141 LVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF 200
+V T A AE AL+ A+ARN+ + DA+++AG WQ +G L GKTL ++G
Sbjct: 94 VVCGTGGGPT-ATAELTWALILALARNLPEEDAALRAGGWQTT--LGTGLAGKTLGIVGL 150
Query: 201 GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPA 259
G++G VAR + GM VIA A+RA A GV VS EE +T+D +SLH+ L+
Sbjct: 151 GRIGARVARIGQAFGMRVIAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDR 210
Query: 260 TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSK 319
T + E MK +VN +RG +VDE AL+ AL +G I+ AALDVF EP D
Sbjct: 211 TRGLVGAEDLALMKPTALLVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHP 270
Query: 320 LVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKG 357
L NV +TPH+G T EA EG + E + L G
Sbjct: 271 LRGLPNVLLTPHIGYVTEEAYEGFYGQAVENIAAWLAG 308
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
| >gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 3e-66
Identities = 95/242 (39%), Positives = 138/242 (57%), Gaps = 7/242 (2%)
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVK 176
LK++ AG G D +D+ A T+ G V N P A A A+ + L+ RN ++A+ S +
Sbjct: 77 LKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERSAR 136
Query: 177 AGKWQRNK--YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY-AQADRARAT 233
AGKW+ + GKTL ++G G +G +AR+A GM +I H+ + +A
Sbjct: 137 AGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLPEELEKAL 196
Query: 234 GVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293
VS +E ++ +D +SL+ PLT AT + N + F KMK GV IVN ARG V+DE+ALV
Sbjct: 197 ATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALV 256
Query: 294 RALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQ---EGVAIEIAEA 350
AL+SG ++ A LDVF EP + L+ NVT+ PH+G T E Q E + +E EA
Sbjct: 257 DALESGKVASAGLDVFENEPEV-NPGLLKMPNVTLLPHMGTLTVETQEKMEELVLENIEA 315
Query: 351 VI 352
+
Sbjct: 316 FL 317
|
D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321 |
| >gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 1e-65
Identities = 109/307 (35%), Positives = 153/307 (49%), Gaps = 14/307 (4%)
Query: 56 VLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA 114
+L+ +K + ++L+ VD +S EE+ I D LI+RS + +E E A
Sbjct: 2 ILIIDKNHPSLTELLEALGFEVDYDPTISREEILAIIPQYDGLIIRSRFPIDKEFIEK-A 60
Query: 115 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS 174
LK + RAG G++N+DL A E G + NAP N A EH + +L A+ + +AD
Sbjct: 61 TNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQE 120
Query: 175 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
V+ G W R GV L+GKT+ ++G+G +G A+R G G VIA+D Y A A
Sbjct: 121 VRNGIWDREGNRGVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYKNFGDAYAEQ 180
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
V L E AD +SLH+PLTP T M N E KK +N ARG VV + LV+
Sbjct: 181 VSL---ETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTKDLVK 237
Query: 295 ALDSGIISQAALDVF---------TEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAI 345
AL SG I A LDV P L+ V +TPH+ T E+ E +A
Sbjct: 238 ALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGWTFESYEKIAE 297
Query: 346 EIAEAVI 352
+ + +
Sbjct: 298 VLVDKIK 304
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 5e-63
Identities = 98/257 (38%), Positives = 133/257 (51%), Gaps = 21/257 (8%)
Query: 103 TKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLT 162
+++ EV E RLK++ G D++DL A E G V N P AEH ALL
Sbjct: 51 SRLDAEVLEKLP-RLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLL 109
Query: 163 AMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD 222
A++R + +A + G + + G L GKTL V+G G++G VAR A+G GM V+A+D
Sbjct: 110 ALSRKLREAIERTRRGDFSQAGLRGFELAGKTLGVVGTGRIGRRVARIARGFGMKVLAYD 169
Query: 223 PYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282
+ A G VS EE + +D ISLH+P TP T + N E F MK G ++N A
Sbjct: 170 VVPDEELAERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLINTA 229
Query: 283 RGGVVDEEALVRALDSGIISQAALDVFTEEP-------------PAKDSKLVL------- 322
RG VVD EALVRAL G ++ A LDV +E +D K +L
Sbjct: 230 RGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADHALLR 289
Query: 323 HENVTVTPHLGASTTEA 339
NV +TPH+ +T EA
Sbjct: 290 KPNVIITPHVAYNTKEA 306
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 1e-62
Identities = 113/330 (34%), Positives = 175/330 (53%), Gaps = 20/330 (6%)
Query: 52 SKPTVLVAEKLGEAGLDVLKN--FANVDC-SYNLSPEELCTKISLCDALIVRSGTKVTRE 108
K L+ E + ++ ++VL+ + N++ L EEL I + +RS T++T E
Sbjct: 9 DKIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEE 68
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNI 168
V + A +L +G +G + VDL AA + G V NAP +NT + AE I + + R I
Sbjct: 69 VLAA-AEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGI 127
Query: 169 AQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD-----P 223
+ +A G W ++ + GKTL ++G+G +GT+++ A+ LGM V +D P
Sbjct: 128 PEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP 187
Query: 224 YAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283
A + S EE ++ +D +SLH+P TP+T M E MK G ++N +R
Sbjct: 188 LGNARQVG-------SLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASR 240
Query: 284 GGVVDEEALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHENVTVTPHLGASTTEA 339
G VVD +AL AL SG ++ AA+DVF EP + S L +NV +TPH+G ST EA
Sbjct: 241 GTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEA 300
Query: 340 QEGVAIEIAEAVIGALKGELAATAVNAPMV 369
QE + +E+A ++ +AVN P V
Sbjct: 301 QENIGLEVAGKLVKYSDNGSTLSAVNFPEV 330
|
Length = 409 |
| >gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 2e-61
Identities = 106/319 (33%), Positives = 161/319 (50%), Gaps = 15/319 (4%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREV 109
KP V++ K+ L++LK V + LS EEL + D L+ ++ +
Sbjct: 1 KPKVVITHKVHPEVLELLKPHCEVISNQTDEPLSREELLRRCKDADGLMAFMPDRIDADF 60
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
++ RLK++ A G DN D+ A T G V P T AE I LL + R+I
Sbjct: 61 LDA-CPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGRHIL 119
Query: 170 QADASVKAGKWQ--RNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-Q 226
D V++GK+ R K+ G L GKT+ ++G G +G +ARR G G ++ +DP+
Sbjct: 120 AGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDPHPLD 179
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+A + V +E + ++DF+ L +PLTP T + N EA KMK G +VN RG V
Sbjct: 180 QAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCRGSV 239
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSK--------LVLHENVTVTPHLGASTTE 338
VDE A+ AL SG + A DVF E A+ + L H+ TPH+G++ E
Sbjct: 240 VDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVFTPHIGSAVDE 299
Query: 339 AQEGVAIEIAEAVIGALKG 357
+ + +E A ++ AL+G
Sbjct: 300 VRLEIELEAALNILQALQG 318
|
Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318 |
| >gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 9e-61
Identities = 93/262 (35%), Positives = 134/262 (51%), Gaps = 7/262 (2%)
Query: 82 LSPEELCTKISLCDALIVRSGT-KVTREVFESSAGRLKVVGRAGVGI-DNVDLSAATEHG 139
+ EEL ++ + L+ GT + E+ A RL+ V A + V A E G
Sbjct: 38 FAAEELRALLAGVEVLVTGWGTPPLDAELLAR-APRLRAVVHAAGSVRGLVTD-AVWERG 95
Query: 140 CLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQ--RNKYVGVSLVGKTLAV 197
LV +A AN AE +A + R I + A+ +AG+ + G L G+T+ +
Sbjct: 96 ILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGI 155
Query: 198 MGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLT 257
+GFG++G V + G+ V+ +DPY A A A GV LVS +E ++ +D +SLH PLT
Sbjct: 156 VGFGRIGRAVVELLRPFGLRVLVYDPYLPAAEAAALGVELVSLDELLARSDVVSLHAPLT 215
Query: 258 PATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD 317
P T M + M+ G +N ARG +VDE AL+ L SG + AALDV EP D
Sbjct: 216 PETRGMIDARLLALMRDGATFINTARGALVDEAALLAELRSGRLR-AALDVTDPEPLPPD 274
Query: 318 SKLVLHENVTVTPHLGASTTEA 339
S L NV +TPH+ ST +
Sbjct: 275 SPLRTLPNVLLTPHIAGSTGDE 296
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330 |
| >gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 4e-59
Identities = 96/299 (32%), Positives = 142/299 (47%), Gaps = 20/299 (6%)
Query: 54 PTVLVAEKLGEAGLDVLKN-FANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFES 112
+LV L + L+ L+ + ++ EEL +++ D L+ G E+ +
Sbjct: 1 MKILVLSPLDDEHLERLRAAAPGAELRV-VTAEELTEELADADVLL---GNPPLPELLPA 56
Query: 113 SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQAD 172
A RL+ + G+D + E ++ NA AE+ + + A AR + +
Sbjct: 57 -APRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYA 115
Query: 173 ASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA-------HDPYA 225
+ +WQR V L GKT+ ++G G +G E+ARRAK GM VI P
Sbjct: 116 RNQAERRWQRRGPVR-ELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVV 174
Query: 226 QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285
+E + AD++ +PLTP T +FN E F MK G ++NV RG
Sbjct: 175 DEVYTPD------ELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGS 228
Query: 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVA 344
VVDE+AL+ AL+SG I+ AALDVF EEP DS L NV +TPH+ + E V
Sbjct: 229 VVDEDALIEALESGRIAGAALDVFEEEPLPADSPLWDLPNVIITPHISGDSPSYPERVV 287
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
| >gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 7e-56
Identities = 102/277 (36%), Positives = 142/277 (51%), Gaps = 19/277 (6%)
Query: 94 CDALIVRSGTKVTREVFES-SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIA 152
DA+ V + V E + +K++ G +NVDL AA E G VV P + A
Sbjct: 45 FDAVCVFVNDDLDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVPAYSPYA 104
Query: 153 AAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAK 212
AEH +ALL A+ R I +A V+ G + + +G L GKT+ V+G GK+G AR K
Sbjct: 105 VAEHAVALLLALNRKIHRAYNRVREGNFSLDGLLGFDLHGKTVGVIGTGKIGQAFARILK 164
Query: 213 GLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM 272
G G V+A+DPY + GV V +E ++ +D ISLH PLTP T + N E KM
Sbjct: 165 GFGCRVLAYDPYPNPE-LAKLGVEYVDLDELLAESDIISLHCPLTPETHHLINAETIAKM 223
Query: 273 KKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPA--KD-----------SK 319
K GV ++N +RGG++D +AL+ AL SG I LDV+ EE +D ++
Sbjct: 224 KDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYEEEAGLFFEDHSDEIIQDDVLAR 283
Query: 320 LVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALK 356
L+ NV +T H T EA IAE + L
Sbjct: 284 LLSFPNVLITGHQAFFTKEALT----NIAETTLENLD 316
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328 |
| >gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 1e-55
Identities = 96/259 (37%), Positives = 140/259 (54%), Gaps = 5/259 (1%)
Query: 84 PEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVV 143
EL + D +++ + + EV E+ LK++ A G+D+VDL A E G V
Sbjct: 39 TAELIERSKDADIVMI-ANMPLPGEVIEA-CKNLKMISVAFTGVDHVDLEACKERGITVS 96
Query: 144 NAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKV 203
NA +T A AE I L + RNI DA+V+AG + +G L GKT+ ++G G +
Sbjct: 97 NAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAGG-TKAGLIGRELAGKTVGIVGTGAI 155
Query: 204 GTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKM 263
G VAR K G V+A+ + + A+A G+ VS +E ++ +D +SLH+PL T +
Sbjct: 156 GLRVARLFKAFGCKVLAYSRS-EKEEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGL 214
Query: 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP-AKDSKLVL 322
E MK+ ++N ARG VVD EAL AL+ G I+ A +DVF EPP D L+
Sbjct: 215 IGKEKLALMKESAILINTARGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLH 274
Query: 323 HENVTVTPHLGASTTEAQE 341
N +TPH+ +T EA E
Sbjct: 275 APNTILTPHVAFATEEAME 293
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
| >gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 3e-55
Identities = 87/265 (32%), Positives = 130/265 (49%), Gaps = 24/265 (9%)
Query: 94 CDALIVRSGTKVTREVFES-SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIA 152
D ++V+ EV+E + +K + G+D +DL A E+G + N P + A
Sbjct: 45 YDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRA 104
Query: 153 AAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGK-----TLAVMGFGKVGTEV 207
AE + + RN + D V G ++ L+G+ T+ ++G G++G+
Sbjct: 105 IAEFAVTQALNLLRNTPEIDRRVAKGDFRWAP----GLIGREIRDLTVGIIGTGRIGSAA 160
Query: 208 ARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267
A+ KG G VIA+DPY + + S E+ + AD ISLH+PLT + N E
Sbjct: 161 AKIFKGFGAKVIAYDPYPNPE-LEKFLLYYDSLEDLLKQADIISLHVPLTKENHHLINAE 219
Query: 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE-------------PP 314
AF KMK G +VN ARGG+VD +AL+ ALDSG I+ AALD + E
Sbjct: 220 AFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIED 279
Query: 315 AKDSKLVLHENVTVTPHLGASTTEA 339
+L+ NV +TPH+ T A
Sbjct: 280 EVLKELIAMPNVLITPHIAFYTDTA 304
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 6e-50
Identities = 87/253 (34%), Positives = 123/253 (48%), Gaps = 13/253 (5%)
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTA-NTIAAAEHGIALLTAMARNIAQADAS 174
RLK++ G+D++ L E VV A N+ A AEH +AL+ A+A+ I + D
Sbjct: 60 RLKLIQVPSAGVDHLPLERLPEG---VVVANNHGNSPAVAEHALALILALAKRIVEYDND 116
Query: 175 VKAGKWQR---NKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRAR 231
++ G W + L GKT+ ++G+G +G E+AR K GM VI + D
Sbjct: 117 LRRGIWHGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRSPKEDEGA 176
Query: 232 ATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
L +EA+ AD + + +PLT T + MK G +VNV RG VVDEEA
Sbjct: 177 DFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEA 236
Query: 292 LVRALDSGIISQAALDVFTEEPPAKD----SKLVLHE--NVTVTPHLGASTTEAQEGVAI 345
L AL I+ AA+DV+ P D S+ HE NV ++PH T E
Sbjct: 237 LYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGWTEETFRRRID 296
Query: 346 EIAEAVIGALKGE 358
E AE + L+GE
Sbjct: 297 EAAENIRRYLRGE 309
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-49
Identities = 107/325 (32%), Positives = 165/325 (50%), Gaps = 19/325 (5%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDAL-----IVRSGTKVTR 107
KP+V++ + L + L L+ V NLSPE T A ++ SG KV
Sbjct: 2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPE---TVEQHAAAFAEAEGLLGSGEKVDA 58
Query: 108 EVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARN 167
+ E +L+ VG DN D+ A T L+++ PT T A+ +AL+ + AR
Sbjct: 59 ALLEK-MPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARR 117
Query: 168 IAQADASVKAGKWQRN---KYVGVSLVGKTLAVMGFGKVGTEVARRAK-GLGMNVI--AH 221
+ + VKAG+W + + G + KTL ++G G++G +A+RA G M ++ A
Sbjct: 118 VVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR 177
Query: 222 DPYAQAD-RARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280
+ +A+ R A L + + +DF+ + +PLT T +F E F KMK +N
Sbjct: 178 RHHKEAEERFNARYCDL---DTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFIN 234
Query: 281 VARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQ 340
RG VVDE AL+ AL G I A LDVF +EP + DS L+ NV PH+G++T E +
Sbjct: 235 AGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETR 294
Query: 341 EGVAIEIAEAVIGALKGELAATAVN 365
+A + +I AL+G++ VN
Sbjct: 295 YNMAACAVDNLIDALQGKVEKNCVN 319
|
Length = 323 |
| >gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 5e-49
Identities = 81/246 (32%), Positives = 125/246 (50%), Gaps = 8/246 (3%)
Query: 96 ALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAE 155
A++ T ++ + + L+++ GVG D +DL AA G V N P T A+
Sbjct: 45 AVVTNGETGLSAALIAA-LPALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVAD 103
Query: 156 HGIALLTAMARNIAQADASVKAGKWQRNKY-VGVSLVGKTLAVMGFGKVGTEVARRAKGL 214
+ LL A+ R I AD V+AG+W + + + + GK + ++G G++G +ARR +
Sbjct: 104 LAVGLLLAVLRRIPAADRFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAF 163
Query: 215 GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM-K 273
GM + H + D L+ +D + + P PAT + N E +
Sbjct: 164 GMEIAYHGRRPKPDVPYRYYASLLELAAE---SDVLVVACPGGPATRHLVNAEVLEALGP 220
Query: 274 KGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG 333
GV +VNVARG VVDE AL+ AL G I+ A LDVF E P + L+ +NV +TPH+
Sbjct: 221 DGV-LVNVARGSVVDEAALIAALQEGRIAGAGLDVFENE-PNVPAALLDLDNVVLTPHIA 278
Query: 334 ASTTEA 339
++T E
Sbjct: 279 SATVET 284
|
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301 |
| >gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 2e-48
Identities = 78/248 (31%), Positives = 118/248 (47%), Gaps = 23/248 (9%)
Query: 95 DALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAA 154
D I+ E+ + LK + G+D + L + G L+ N ++I A
Sbjct: 39 DIEILYGYNPDFDELDLAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIA 98
Query: 155 EHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGL 214
E + + + + + +A + K KW+ + + L GKT+ +G G +G E+A+R K
Sbjct: 99 EWIVGYILEIYKGLKKAYKNQKEKKWKMDS-SLLELYGKTILFLGTGSIGQEIAKRLKAF 157
Query: 215 GMNVIA-----HDP------YAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKM 263
GM VI D Y + +E + AD + +PLT T +
Sbjct: 158 GMKVIGVNTSGRDVEYFDKCYPLEEL-----------DEVLKEADIVVNVLPLTEETHHL 206
Query: 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLH 323
F++ F +MKKG +NV RG VDE+AL+ AL + I AALDVF EEP KDS L
Sbjct: 207 FDEAFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSPLWDL 266
Query: 324 ENVTVTPH 331
+NV +TPH
Sbjct: 267 DNVLITPH 274
|
Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 5e-47
Identities = 89/256 (34%), Positives = 132/256 (51%), Gaps = 15/256 (5%)
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
++A +LK++ A G +NVDL+AA E G V N T + A+H +ALL A+A +
Sbjct: 62 AAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDY 121
Query: 172 DASVKAGKWQRNKYVG------VSLVGKTLAVMGFGKVGTEVARRAKGLGMNV-IAHDPY 224
+V AG+WQ++ V L GKTL ++G G++G VAR A+ GM V I P
Sbjct: 122 QQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP- 180
Query: 225 AQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284
R + +E + D ++LH PLT T + MK G ++N ARG
Sbjct: 181 -----GRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARG 235
Query: 285 GVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVL--HENVTVTPHLGASTTEAQEG 342
G+VDE+AL AL SG + AA DV + EPP + L+ + VTPH + EA++
Sbjct: 236 GLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQR 295
Query: 343 VAIEIAEAVIGALKGE 358
+ ++AE G+
Sbjct: 296 IVGQLAENARAFFAGK 311
|
Length = 317 |
| >gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 166 bits (424), Expect = 1e-46
Identities = 85/242 (35%), Positives = 124/242 (51%), Gaps = 31/242 (12%)
Query: 95 DALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAA 154
D L+VRS TKV + E S ++K VG A +G D++D E G NAP N + A
Sbjct: 38 DVLLVRSVTKVNEALLEGS--KVKFVGTATIGTDHIDTDYLKERGIGFANAPGCNANSVA 95
Query: 155 EHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGL 214
E+ ++ L +A QR G SL GKT+ ++G G VG+ +ARR + L
Sbjct: 96 EYVLSALLVLA---------------QRQ---GFSLKGKTVGIVGVGNVGSRLARRLEAL 137
Query: 215 GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTP----ATSKMFNDEAFF 270
GMNV+ DP G VS EE ++ AD I+LH+PLT T + +++
Sbjct: 138 GMNVLLCDPPRAE---AEGDPGFVSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLA 194
Query: 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVT-VT 329
+K G ++N +RG V+D +AL+ L G + LDV+ EP D +L+ + V T
Sbjct: 195 ALKPGQILINASRGAVIDNQALLALLQRGKDLRVVLDVWENEPEI-DLELL--DKVDIAT 251
Query: 330 PH 331
PH
Sbjct: 252 PH 253
|
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343 |
| >gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 2e-46
Identities = 95/320 (29%), Positives = 160/320 (50%), Gaps = 25/320 (7%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYNL-SPEELCTKISLCDA-LIVRSGTKVTREVF 110
K +L A+ LG+ L V + F + Y SPEE+ +I DA +I+ + + +EV
Sbjct: 2 KIVILDAKTLGDKDLSVFEEFGDFQ-IYPTTSPEEVIERIK--DANIIITNKVVIDKEVL 58
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
S LK++ G +NVD+ A + G V N +T + A+H A+L ++ I
Sbjct: 59 -SQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINY 117
Query: 171 ADASVKAGKWQRNK-YVGVS-----LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY 224
D VK+G++ + + +S + GK ++G G +G VA+ A+ G V+ +
Sbjct: 118 YDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTS 177
Query: 225 A---QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281
+ R VS EE + T+D IS+H PL T + + +K G ++NV
Sbjct: 178 GKNKNEEYER------VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINV 231
Query: 282 ARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLV---LHENVTVTPHLGASTTE 338
RGG+V+E+ L +ALD I A LDV +EP K+ L+ E + +TPH+ ++ E
Sbjct: 232 GRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKE 290
Query: 339 AQEGVAIEIAEAVIGALKGE 358
A++ + ++ E + L+G
Sbjct: 291 ARKTLIEKVKENIKDFLEGG 310
|
Length = 311 |
| >gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH) | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 3e-45
Identities = 79/247 (31%), Positives = 124/247 (50%), Gaps = 11/247 (4%)
Query: 105 VTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAM 164
+T E A LK+ AG+G D+VDL AA + G V +N ++ AEH + ++ +
Sbjct: 74 MTAERIAK-AKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILIL 132
Query: 165 ARNIAQADASVKAGKWQ-----RNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVI 219
RN G W + Y L GKT+ +G G++G V RR K ++++
Sbjct: 133 VRNYVPGHEQAIEGGWNVADVVKRAY---DLEGKTVGTVGAGRIGLRVLRRLKPFDVHLL 189
Query: 220 AHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVR 277
+D + + + G+ E+ +S D ++++ PL P T +FN E KMKKG
Sbjct: 190 YYDRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAY 249
Query: 278 IVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTT 337
+VN ARG + D EA+ AL+SG ++ A DV+ +P KD N +TPH+ +T
Sbjct: 250 LVNTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTMPNNAMTPHISGTTL 309
Query: 338 EAQEGVA 344
+AQ A
Sbjct: 310 DAQARYA 316
|
NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348 |
| >gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 4e-44
Identities = 98/302 (32%), Positives = 149/302 (49%), Gaps = 13/302 (4%)
Query: 50 ITSKPTVLVAEKLGEAGL-DVLKNFAN--VDCSYNLSPEELCTKISLCDALIVRSG---- 102
I P L+ GE GL L+ + V S P+ K L DA +V S
Sbjct: 43 IDFTPGELLGSVSGELGLRKFLEERGHELVVTSDKDGPDSDFEK-ELPDADVVISQPFWP 101
Query: 103 TKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLT 162
+T E A LK+ AG+G D+VDL AA+EHG V +N+I+ AEH + ++
Sbjct: 102 AYLTAERIAK-APNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMIL 160
Query: 163 AMARNIAQADASVKAGKWQRNKYVGVS--LVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
A+ RN + G W V S L G T+ ++G G++G V RR K + +
Sbjct: 161 ALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY 220
Query: 221 HDPY-AQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRI 278
D + + + G+ VSF+ +S D +++H PL P T +F+ + +MK+G +
Sbjct: 221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYL 280
Query: 279 VNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTE 338
VN ARG +VD +A+VRAL+SG ++ A DV+ +P D +TPH+ +T
Sbjct: 281 VNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLS 340
Query: 339 AQ 340
AQ
Sbjct: 341 AQ 342
|
Length = 385 |
| >gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 5e-44
Identities = 88/260 (33%), Positives = 131/260 (50%), Gaps = 16/260 (6%)
Query: 83 SPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLV 142
S E+ + D +++ S TRE + +LK++ G +NVDL AA E G V
Sbjct: 34 SAEQTIERAKDAD-IVITSKVLFTRETL-AQLPKLKLIAITATGTNNVDLVAAKELGIAV 91
Query: 143 VNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK------YVGVSLVGKTLA 196
N ++ EH + ++ A+ ++ + +W K Y + G TL
Sbjct: 92 KNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLG 151
Query: 197 VMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPL 256
V G G +GTEV R A+ LGM V+ YA+ A G FEE + AD ++LH PL
Sbjct: 152 VFGKGCLGTEVGRLAQALGMKVL----YAEHKGASVCREGYTPFEEVLKQADIVTLHCPL 207
Query: 257 TPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAK 316
T T + N E MK ++N RG +VDE+AL+ AL++G I+ AALDV +EPP K
Sbjct: 208 TETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEK 267
Query: 317 DSKLVLHE----NVTVTPHL 332
D+ L+ N+ +TPH+
Sbjct: 268 DNPLIQAAKRLPNLLITPHI 287
|
Length = 314 |
| >gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-40
Identities = 82/278 (29%), Positives = 139/278 (50%), Gaps = 24/278 (8%)
Query: 76 VDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAA 135
+ P+ I+ D + + ++ ++ + A ++K++ + GVG++ VD+ AA
Sbjct: 48 DAVAREDVPDV----IANYDICVPKM-MRLDADII-ARASQMKLIMQFGVGLEGVDVDAA 101
Query: 136 TEHGCLVVNAP---TANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVG 192
T+HG V P T N + AE I L+ + R + S+KA + + +G +L G
Sbjct: 102 TKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRL--GEPIGDTLFG 159
Query: 193 KTLAVMGFGKVGTEVARRAKGLGMNVIA------HDPYAQADRARATGVGLV-------S 239
KT+ ++G+G +G E+A+R + G+ ++A +P LV
Sbjct: 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHED 219
Query: 240 FEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299
E AD + L LT T+ + NDE MKKG +VN+ARGG++D +A++ AL+SG
Sbjct: 220 IYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279
Query: 300 IISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTT 337
+ A+DV EP D ++ H NV +TPH+ T
Sbjct: 280 HLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTE 317
|
Length = 347 |
| >gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 5e-40
Identities = 78/260 (30%), Positives = 120/260 (46%), Gaps = 17/260 (6%)
Query: 94 CDALIVRSGTKVTREVFES-SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIA 152
D + + +K++ E+ E +K + +G D++DL AA E G V N + +
Sbjct: 45 YDGISILGKSKISAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVSNVTYSPN-S 103
Query: 153 AAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAK 212
A++ + L+ R Q + + G L T+ V+G G++G V +
Sbjct: 104 VADYTVMLMLMALRKYKQIMKRAEVNDYSLGGLQGRELRNLTVGVIGTGRIGQAVIKNLS 163
Query: 213 GLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM 272
G G ++A+DPY + + V + +D I+LH PLT T + N E+ KM
Sbjct: 164 GFGCKILAYDPYPNEEVKK--YAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIAKM 221
Query: 273 KKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE-----PPAKDSKLVLHE--- 324
K GV I+N ARG ++D EAL+ L+SG I AALDV E K L E
Sbjct: 222 KDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAI 281
Query: 325 -----NVTVTPHLGASTTEA 339
NV +TPH+ T +A
Sbjct: 282 LRSFPNVILTPHMAFYTDQA 301
|
This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322 |
| >gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 72/245 (29%), Positives = 115/245 (46%), Gaps = 22/245 (8%)
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLV--VNAPTANTIAAAEHGIALLTAMARNIAQADA 173
LK + G G+D++ +V V+ A +A E+ +A + + R++ + A
Sbjct: 58 NLKAIFSLGAGVDHLLADPDLPDVPIVRLVDPGLAQGMA--EYVLAAVLRLHRDMDRYAA 115
Query: 174 SVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARAT 233
+ G W+ + + V+G G++G VARR LG V R+
Sbjct: 116 QQRRGVWKPLPQRPAAER--RVGVLGLGELGAAVARRLAALGFPVSGWS------RSPKD 167
Query: 234 GVGLVSF------EEAISTADF-ISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
G+ F + ++ D + L +PLTP T + N E ++ +G ++NV RG
Sbjct: 168 IEGVTCFHGEEGLDAFLAQTDILVCL-LPLTPETRGILNAELLARLPRGAALINVGRGPH 226
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIE 346
+ E L+ ALDSG +S A LDVF +EP D L H VTVTPH+ A+ T+ A
Sbjct: 227 LVEADLLAALDSGHLSGAVLDVFEQEPLPADHPLWRHPRVTVTPHI-AAITDPDSAAAQ- 284
Query: 347 IAEAV 351
+AE +
Sbjct: 285 VAENI 289
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 5e-36
Identities = 82/263 (31%), Positives = 129/263 (49%), Gaps = 19/263 (7%)
Query: 94 CDALIVRSGTKVTREVFESSAGR-LKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIA 152
DA+IVR +E E +K V VG +++DL AA E G + P+ + A
Sbjct: 45 HDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNA 104
Query: 153 AAEHGIALLTAMARNIAQADASVKAGKWQRNKYV-GVSLVGKTLAVMGFGKVGTEVARRA 211
AE L ++R+ A + ++ + ++ + T+ ++G G++G A+
Sbjct: 105 IAELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIGLTAAKLF 164
Query: 212 KGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATS-KMFNDEAFF 270
KGLG VI +D Y +D A+ V VS +E + +D ISLH+P + K+ N E
Sbjct: 165 KGLGAKVIGYDIY-PSDAAKDV-VTFVSLDELLKKSDIISLHVPYIKGKNDKLINKEFIS 222
Query: 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP--------------PAK 316
KMK G ++N ARG + DEEA++ AL+SG ++ DV E P
Sbjct: 223 KMKDGAILINTARGELQDEEAILEALESGKLAGFGTDVLNNEKEIFFKDFDGDKIEDPVV 282
Query: 317 DSKLVLHENVTVTPHLGASTTEA 339
+ L L+ V +TPH+G+ T EA
Sbjct: 283 EKLLDLYPRVLLTPHIGSYTDEA 305
|
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330 |
| >gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 6e-36
Identities = 85/240 (35%), Positives = 122/240 (50%), Gaps = 16/240 (6%)
Query: 115 GRLKVVGRAGVGIDNV--DLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQAD 172
GRL+ V GID L G +V A A AE +A + A A+ + +
Sbjct: 63 GRLRWVQLVSSGIDYYPDWLFE----GPVVTCARGVAAEAIAEFVLAAILAAAKRLP--E 116
Query: 173 ASVK-AGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRAR 231
VK A +W+R SL G TL ++GFG +G +ARRA LGM V+A ++ R
Sbjct: 117 IWVKGAEQWRREP--LGSLAGSTLGIVGFGAIGQALARRALALGMRVLA---LRRSGRPS 171
Query: 232 -ATGVGLVS-FEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289
GV + E + +D + L PLTP T + N + + K G+ ++N+ARGG+VD+
Sbjct: 172 DVPGVEAAADLAELFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQ 231
Query: 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAE 349
EAL+ ALDSG IS A+LDV EP + L H V ++PH A + + +A E
Sbjct: 232 EALLEALDSGRISLASLDVTDPEPLPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLE 291
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308 |
| >gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 8e-36
Identities = 85/245 (34%), Positives = 115/245 (46%), Gaps = 35/245 (14%)
Query: 95 DALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAA 154
D L+VRS T+V R + E S R++ VG +G D++DL E G +AP N
Sbjct: 39 DVLLVRSVTRVDRALLEGS--RVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVV 96
Query: 155 EHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGL 214
++ + L +A GV L +T V+G G VG + R +GL
Sbjct: 97 DYVLGSLLTLAER------------------EGVDLAERTYGVVGAGHVGGRLVRVLRGL 138
Query: 215 GMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTP----ATSKMFNDEAF 269
G V+ DP R A G G VS E + D ISLH PLT T + DEAF
Sbjct: 139 GWKVLVCDP----PRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL-DEAF 193
Query: 270 F-KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTV 328
++ G ++N +RG VVD +AL AL SG A LDV+ EP L L + T+
Sbjct: 194 LASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEP---QIDLELADLCTI 250
Query: 329 -TPHL 332
TPH+
Sbjct: 251 ATPHI 255
|
Length = 381 |
| >gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 4e-35
Identities = 94/254 (37%), Positives = 132/254 (51%), Gaps = 23/254 (9%)
Query: 125 VGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGK---WQ 181
VG +NVD+ AA ++G V N P T AE +L A AR I +AD ++AG W
Sbjct: 95 VGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWL 154
Query: 182 RNKYVGVSLVGKTLAVMGFGKVGTEVARR-AKGLGMNVIAHDPYAQADRA---------- 230
+ +VG L G+T+ V+G G++G+ AR +G MN+I +D Y Q+ R
Sbjct: 155 PHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY-QSTRLEKFVTAYGQF 213
Query: 231 -RATGVGLV------SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283
+A G V S EE + AD ISLH L T + N E MKK +VN +R
Sbjct: 214 LKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASR 273
Query: 284 GGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGV 343
G V+DE ALV L + + + LDVF +EP K L +N V PH+ +++ +EG+
Sbjct: 274 GPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPG-LADMKNAVVVPHIASASKWTREGM 332
Query: 344 AIEIAEAVIGALKG 357
A A V+G LKG
Sbjct: 333 ATLAALNVLGKLKG 346
|
Length = 386 |
| >gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-33
Identities = 81/252 (32%), Positives = 122/252 (48%), Gaps = 10/252 (3%)
Query: 114 AGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADA 173
A L+++ AG+G D++DL AA G V +N ++ AE + + + RN
Sbjct: 119 AKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYH 178
Query: 174 SVKAGKWQRNK--YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRA 230
V +G+W Y L GKT+ +G G++G + +R K N++ HD +
Sbjct: 179 QVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE 238
Query: 231 RATGVGLVSFEEAIST----ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ TG FEE + D + ++ PLT T MFN E KMKKGV IVN ARG +
Sbjct: 239 KETGA---KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAI 295
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIE 346
+D +A+ A SG I DV+ +P KD N +TPH+ +T +AQ A
Sbjct: 296 MDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAG 355
Query: 347 IAEAVIGALKGE 358
+ + + KGE
Sbjct: 356 VKDMLDRYFKGE 367
|
Length = 386 |
| >gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 5e-33
Identities = 81/265 (30%), Positives = 133/265 (50%), Gaps = 18/265 (6%)
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVK 176
+K + + G D DL AT++ ++ N P+ + + AE + + R+ Q V+
Sbjct: 70 IKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVR 129
Query: 177 AG--KWQRNKYVGVSLVGKTLAVMGFGKVGTEVAR-RAKGLGMNVIAHDPYAQADRARAT 233
+W+ + S+ +AV+G G++G VA+ AKG G +V+A+DP+ +A
Sbjct: 130 EHDFRWEPP-ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPF-PNAKAATY 187
Query: 234 GVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293
+ EEA+ AD ++LHMP T +FN + F KKG VN ARG +VD +AL+
Sbjct: 188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALL 247
Query: 294 RALDSGIISQAALDVFTEEPP--AKDSK-----------LVLHENVTVTPHLGASTTEAQ 340
ALD+G+I AALD + E P D + L+ E+V +TPH+ T A
Sbjct: 248 DALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAV 307
Query: 341 EGVAIEIAEAVIGALKGELAATAVN 365
+ + ++ +A + L+ VN
Sbjct: 308 KNLIVDALDATLEVLQTGTTRLRVN 332
|
Length = 332 |
| >gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 9e-31
Identities = 72/225 (32%), Positives = 106/225 (47%), Gaps = 14/225 (6%)
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
RL+VV G D V L E G + NA + + AE +AL+ A R + + +
Sbjct: 60 RLRVVQTLSAGYDGV-LPLLPE-GVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQ 117
Query: 176 KAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGV 235
G+W+ SL + + ++G+G +G + RR + V A AR G
Sbjct: 118 ARGRWEPR--RTPSLADRRVLIVGYGSIGRAIERRLAPFEVRVTR-----VARTAR-PGE 169
Query: 236 GLVSFEEA---ISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEAL 292
+ +E + AD + L +PLT T + + E +M G +VNVARG VVD +AL
Sbjct: 170 QVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDAL 229
Query: 293 VRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTT 337
V L SG + +AALDV EP L V +TPH+G +T
Sbjct: 230 VAELASGRL-RAALDVTDPEPLPPGHPLWSAPGVLITPHVGGATP 273
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300 |
| >gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 9/233 (3%)
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
+ K++ G+D++D+S E+ L NA A +I+ AEH ALL A A+NI + + ++
Sbjct: 49 KTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNM 107
Query: 176 KAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGV 235
K G ++++ L K+L ++G+G +G VA AK GMN+ A Y ++
Sbjct: 108 KNGNFKQSPTK--LLYNKSLGILGYGGIGRRVALLAKAFGMNIYA---YTRSYVNDGISS 162
Query: 236 GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRA 295
+ E+ + +DF+ + +PLT T M N + +KG+ I+NVAR VVD+ ++
Sbjct: 163 IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNF 222
Query: 296 LDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIA 348
L + DV+ EP ++ +NV ++PH+ + A+ +A
Sbjct: 223 LRNHNDKYYLSDVWWNEPIITETNP---DNVILSPHVAGGMSGEIMQPAVALA 272
|
Length = 303 |
| >gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 4e-29
Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 18/238 (7%)
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVK 176
+K + + G D DL A +H ++ N P+ + AE+ +++ + R + V+
Sbjct: 70 IKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQ 129
Query: 177 AG--KWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
A WQ + + + T+A++G G++G A+ G G + A+D Y D T
Sbjct: 130 AHDFTWQ-AEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTY 188
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
S +EAI AD ISLH+P + +F+ F +KKG +VN ARG V++ L+
Sbjct: 189 KD--SVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIA 246
Query: 295 ALDSGIISQAALDVFTEEPP-------AKD------SKLVLHENVTVTPHLGASTTEA 339
A++ G + AA+D + E KD +L+ HE + VTPH+ + EA
Sbjct: 247 AVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEA 304
|
Length = 330 |
| >gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 7e-29
Identities = 74/221 (33%), Positives = 97/221 (43%), Gaps = 17/221 (7%)
Query: 154 AEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLV----GKTLAVMGFGKVGTEVAR 209
AEH +ALL A R + A +A W LV G T+A++G G +G +
Sbjct: 88 AEHALALLLAGLRQLP---ARARATTWD--PAEEDDLVTLLRGSTVAIVGAGGIGRALIP 142
Query: 210 RAKGLGMNVIA----HDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265
G VIA P AD V +E AD + L PLTP T + +
Sbjct: 143 LLAPFGAKVIAVNRSGRPVEGADET----VPADRLDEVWPDADHVVLAAPLTPETRHLVD 198
Query: 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHEN 325
A MK +VNVARG +VD +ALV AL SG I+ AALDV EP L N
Sbjct: 199 AAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEPLPDGHPLWSLPN 258
Query: 326 VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNA 366
+TPH+ + + +A +AE V GE V+
Sbjct: 259 ALITPHVANTPEVIRPLLAERVAENVRAFAAGEPLLGVVDP 299
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303 |
| >gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-27
Identities = 66/196 (33%), Positives = 91/196 (46%), Gaps = 28/196 (14%)
Query: 176 KAGKWQRNKYV--GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD----PYAQADR 229
K W R + VGK + ++G+G +G + AR A+ LGM V A+ P ++ +
Sbjct: 115 KEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGMEVYAYTRSPRPTPESRK 174
Query: 230 ARA-----TGVGLVSFEEA-ISTADFISLH-------------MPLTPATSKMFNDEAFF 270
TG S A S D SLH +PLTPAT + E F
Sbjct: 175 DDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQDLDLLVVSLPLTPATKHLLGAEEF- 233
Query: 271 KM--KKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTV 328
++ K+ + N+ARG +VD +ALV AL+SG I AALDV EP D L NV +
Sbjct: 234 EILAKRKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLPADHPLWSAPNVII 293
Query: 329 TPHLGASTTEAQEGVA 344
TPH+ T E +
Sbjct: 294 TPHVSWQTQEYFDRAL 309
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334 |
| >gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 6e-22
Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 16/190 (8%)
Query: 154 AEHGIALLTAMARNIAQADASVKAGKWQ---------RNKYVGVSLVGKTLAVMGFGKVG 204
AEH +AL+ A R + + + + +W R +L+G + + GFG +G
Sbjct: 96 AEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIG 155
Query: 205 TEVARRAKGLGMNVIAHDPYAQADRARATGVGLVS---FEEAISTADFISLHMPLTPATS 261
+A LG V A++ RA G +V+ E + D + + +P TP+T+
Sbjct: 156 QRLAPLLTALGARVT---GVARSAGERA-GFPVVAEDELPELLPETDVLVMILPATPSTA 211
Query: 262 KMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLV 321
+ E + K +VNV RG VDE+ALV AL+SG + AALDV EP S L
Sbjct: 212 HALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLPASSPLW 271
Query: 322 LHENVTVTPH 331
N+ +TPH
Sbjct: 272 DAPNLILTPH 281
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|153174 cd04902, ACT_3PGDH-xct, C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 2e-21
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGE 583
++ R D+PG+IGKVG++LG+ +N+ M VGR P +A+M + VDE EVL+++
Sbjct: 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRA 61
Query: 584 TPAIEEFVFLKL 595
P I ++L
Sbjct: 62 LPGILSAKVVEL 73
|
The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between identical domains in the asymmetric unit. How this asymmetry influences the mechanism of effector inhibition is still unknown. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73 |
| >gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (229), Expect = 4e-20
Identities = 79/261 (30%), Positives = 118/261 (45%), Gaps = 31/261 (11%)
Query: 95 DALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAA 154
DAL+VRS TKV + +K VG A G D+VD + + G AP N IA
Sbjct: 39 DALMVRSVTKVNESLLAGKP--IKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVV 96
Query: 155 EHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGL 214
E+ + L +A +R+ G SL +T+ ++G G VG + R + L
Sbjct: 97 EYVFSSLLMLA---------------ERD---GFSLHDRTVGIVGVGNVGRRLQARLEAL 138
Query: 215 GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPL---TPATSKMFNDEAFF- 270
G+ + DP +ADR S +E + AD ++ H PL P + DE
Sbjct: 139 GIKTLLCDP-PRADRGDEGD--FRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIR 195
Query: 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTV-T 329
+K G ++N RG VVD AL+ L+ G LDV+ EP + + L + V + T
Sbjct: 196 SLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEP---ELNVELLKKVDIGT 252
Query: 330 PHLGASTTEAQEGVAIEIAEA 350
PH+ T E + ++ EA
Sbjct: 253 PHIAGYTLEGKARGTTQVFEA 273
|
Length = 378 |
| >gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases | Back alignment and domain information |
|---|
Score = 85.0 bits (210), Expect = 5e-18
Identities = 55/242 (22%), Positives = 83/242 (34%), Gaps = 23/242 (9%)
Query: 86 ELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLS-AATEHGCLVVN 144
L + D ++ E +++ +G D+ DL+ A G +
Sbjct: 57 TLAKALWSLDVVLKVKEPLTNAEYALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIA 116
Query: 145 APTA-------NTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAV 197
N+I A E + + + GKT+ V
Sbjct: 117 VEGVELPLLTSNSIGAGELSVQFIARFLEVQQPGRLGGAPD-----------VAGKTVVV 165
Query: 198 MGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARAT--GVGLVSFEEAISTADFISLHMP 255
+G G VG E A+ +GLG V+ D +A G + EEA++ AD I
Sbjct: 166 VGAGVVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTL 225
Query: 256 LTPATSKMFNDEAFF-KMKKGVRIVNVARGGVVDEEALVR-ALDSGIISQAALDVFTEEP 313
L + + E +MK G IVNVA G V +AL L+ G DV P
Sbjct: 226 LPGKRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGDVNMPGP 285
Query: 314 PA 315
Sbjct: 286 GC 287
|
The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310 |
| >gnl|CDD|153151 cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 3e-17
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGE 583
+L D PG+IGKVG++LG++ +N+ M VGR A M + VD EVL+++
Sbjct: 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKA 61
Query: 584 TPAIEEFVFL 593
P I +
Sbjct: 62 LPGIIRVRLI 71
|
ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-exposed active site cleft. This CD also includes the C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillus, and Treponema species. LSD enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in E. coli, and other Enterobacteriales, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71 |
| >gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 5e-16
Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 18/180 (10%)
Query: 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADF---- 249
T+ ++G G +G++VA+ + G P R+R + G+ SF + F
Sbjct: 138 TIGILGAGVLGSKVAQSLQTWGF------PLRCWSRSRKSWPGVQSFAGREELSAFLSQT 191
Query: 250 ---ISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAAL 306
I+L +P TP T + N + ++ G ++N+ARG V E+ L+ ALDSG + A L
Sbjct: 192 RVLINL-LPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAML 250
Query: 307 DVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIE-IAEAVIGALKGELAATAVN 365
DVF+ EP +S L H V +TPH+ A T A+ A+E I+ + KGE V+
Sbjct: 251 DVFSREPLPPESPLWQHPRVAITPHVAAVTRPAE---AVEYISRTIAQLEKGERVCGQVD 307
|
Length = 312 |
| >gnl|CDD|153175 cd04903, ACT_LSD, C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 5e-12
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIE 588
D+PG I KV S+L D+ +N+ FM V R QA+M I VD+ EV+++I + P I
Sbjct: 8 DKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIH 66
|
The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71 |
| >gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 4e-07
Identities = 36/99 (36%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAI 244
V L GK + V G+G VG VA R +GLG VI DP +A A G ++ EEA
Sbjct: 18 NVLLAGKNVVVAGYGDVGKGVAARLRGLGARVIVTEIDP-IRALEAAMDGFEVMKMEEAA 76
Query: 245 STADFISLHMPLTPAT--SKMFNDEAFFKMKKGVRIVNV 281
AD +T AT + E F MK G + N
Sbjct: 77 KRADIF-----VT-ATGNKDVITREHFRAMKDGAILANA 109
|
Length = 162 |
| >gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V L GK + V G+G VG +A R +G+G VI DP +A A G +++ EEA
Sbjct: 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP-IRALEAAMDGFRVMTMEEAAK 263
Query: 246 TAD-FISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280
T D F++ + E F KMK G + N
Sbjct: 264 TGDIFVT-----ATGNKDVIRKEHFEKMKDGAILAN 294
|
Length = 420 |
| >gnl|CDD|190133 pfam01842, ACT, ACT domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRI-APQKQAVMTIGVDEEPSREVLKK 580
+++ D+PG++ +V L D +N+ +S + + VDEE L+
Sbjct: 1 TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEA 60
Query: 581 I 581
+
Sbjct: 61 L 61
|
This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66 |
| >gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-05
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKK 580
D+PG++ KV S+L + +N+ + +A + I VD + E L +
Sbjct: 7 DRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLE 57
|
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60 |
| >gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 9e-05
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GK + V G+G VG A RA+GLG VI DP A +A G ++ EEA
Sbjct: 191 VLIAGKVVVVAGYGWVGKGCAMRARGLGARVIVTEVDPI-CALQAAMDGFEVMPMEEAAK 249
Query: 246 TADF 249
D
Sbjct: 250 IGDI 253
|
S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402 |
| >gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAISTA 247
+ GKT+ V G+G G +A RA+G+G VI DP +A A G +++ EEA
Sbjct: 194 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP-IRALEAAMDGFRVMTMEEAAKIG 252
Query: 248 D-FISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280
D FI+ + E F MK G + N
Sbjct: 253 DIFIT-----ATGNKDVIRGEHFENMKDGAIVAN 281
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407 |
| >gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 1e-04
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GK + V G+G VG A+R +GLG VI DP A +A G +++ EEA
Sbjct: 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPIC-ALQAAMDGFRVMTMEEAAE 266
Query: 246 TADFI 250
D
Sbjct: 267 LGDIF 271
|
Length = 425 |
| >gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 67/291 (23%), Positives = 108/291 (37%), Gaps = 31/291 (10%)
Query: 61 KLGEAGLDVLKNFANVDCSYNLSP---EELCTKISLCDALIVRSGTKVTREVFESSAGRL 117
L E + LK +A Y+ P EE+ +I D ++V T++ EV E+ +
Sbjct: 11 GLNEEAEEELKKYAEEVVFYDDIPESDEEIIERIGDADCVLVSYTTQIDEEVLEACP-NI 69
Query: 118 KVVGRAGVGID----NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADA 173
K +G NVD++AA E+G V E+ I+ L +
Sbjct: 70 KYIGMCCSLYSEESANVDIAAARENGITVTGIRDYGDEGVVEYVISELIRLLHGFGGK-- 127
Query: 174 SVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR---A 230
+W K L G + ++G G G +A G +V Y R A
Sbjct: 128 -----QW---KEEPRELTGLKVGIIGLGTTGQMIADALSFFGADVY----YYSRTRKPDA 175
Query: 231 RATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEE 290
A G+ + E + T D I + P + +E F + G + N + G + E
Sbjct: 176 EAKGIRYLPLNELLKTVDVICTCL---PKNVILLGEEEFELLGDGKILFNTSLGPSFEVE 232
Query: 291 ALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQE 341
AL + L + + D D +L+ + NV T T +A E
Sbjct: 233 ALKKWLKASGYNIFDCD---TAGALGDEELLRYPNVICTNKSAGWTRQAFE 280
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294 |
| >gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GK V G+G VG A +G G VI DP A +A G +V+ EE +
Sbjct: 206 VMIAGKVAVVCGYGDVGKGCAASLRGQGARVIVTEIDPIC-ALQAAMEGYQVVTLEEVVK 264
Query: 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281
AD T + F MKK + N+
Sbjct: 265 DADIFV----TTTGCVDIIVGRHFMNMKKDAIVCNI 296
|
Length = 430 |
| >gnl|CDD|181371 PRK08306, PRK08306, dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 192 GKTLAVMGFGKVGTEVARRAKGLGMN--VIAHDPYAQADRARATGVGLVSF-----EEAI 244
G + V+GFG+ G +AR K LG N V A A AR T +GL F E +
Sbjct: 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS---AHLARITEMGLSPFHLSELAEEV 208
Query: 245 STADFI 250
D I
Sbjct: 209 GKIDII 214
|
Length = 296 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 595 | |||
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 100.0 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 100.0 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 100.0 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 100.0 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 100.0 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 100.0 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 100.0 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 100.0 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 100.0 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 100.0 | |
| PLN02928 | 347 | oxidoreductase family protein | 100.0 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 100.0 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 100.0 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 100.0 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 100.0 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 100.0 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 100.0 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 100.0 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 100.0 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 100.0 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 100.0 | |
| TIGR00719 | 208 | sda_beta L-serine dehydratase, iron-sulfur-depende | 100.0 | |
| KOG0067 | 435 | consensus Transcription factor CtBP [Transcription | 99.97 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.89 | |
| PF00389 | 133 | 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr | 99.87 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 99.86 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.83 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 99.78 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.59 | |
| PLN02494 | 477 | adenosylhomocysteinase | 99.57 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 99.57 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.53 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.53 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.53 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 99.49 | |
| COG1760 | 262 | SdaA L-serine deaminase [Amino acid transport and | 99.48 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.48 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.47 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.42 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.38 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 99.34 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.3 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.29 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 99.26 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.25 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.24 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.23 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.17 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.16 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.12 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.12 | |
| PF03315 | 157 | SDH_beta: Serine dehydratase beta chain; InterPro: | 99.09 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.09 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.06 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 99.04 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 98.97 | |
| PRK15040 | 454 | L-serine dehydratase TdcG; Provisional | 98.96 | |
| cd04902 | 73 | ACT_3PGDH-xct C-terminal ACT (regulatory) domain o | 98.94 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 98.91 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.9 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.85 | |
| PRK15023 | 454 | L-serine deaminase; Provisional | 98.85 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.82 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.81 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.81 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.8 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.79 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 98.79 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.78 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.78 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.77 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 98.76 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.75 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 98.74 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.66 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.65 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.64 | |
| cd04901 | 69 | ACT_3PGDH C-terminal ACT (regulatory) domain of D- | 98.6 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.6 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.59 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.59 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 98.59 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.58 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 98.57 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.56 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.55 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.51 | |
| TIGR00720 | 455 | sda_mono L-serine dehydratase, iron-sulfur-depende | 98.5 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.47 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 98.47 | |
| cd04903 | 71 | ACT_LSD C-terminal ACT domain of the L-serine dehy | 98.46 | |
| cd04879 | 71 | ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te | 98.45 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.45 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.45 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 98.44 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.44 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.43 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.42 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.42 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.41 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 98.39 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 98.35 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.34 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.3 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.29 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.28 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.27 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.26 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 98.25 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.24 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 98.23 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.23 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 98.2 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.15 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.14 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 98.14 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 98.1 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 98.09 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 98.08 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.06 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 98.05 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.05 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 98.03 | |
| cd04878 | 72 | ACT_AHAS N-terminal ACT domain of the Escherichia | 98.0 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.99 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.95 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.94 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.92 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.9 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.89 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.89 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.88 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 97.88 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 97.87 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.86 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.85 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 97.82 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.81 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.79 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.79 | |
| cd04874 | 72 | ACT_Af1403 N-terminal ACT domain of the yet unchar | 97.77 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.75 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.74 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 97.73 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.72 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.71 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.71 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.71 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.7 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.69 | |
| cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monof | 97.69 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.66 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 97.65 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.64 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.64 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.64 | |
| PF13291 | 80 | ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. | 97.63 | |
| PRK08577 | 136 | hypothetical protein; Provisional | 97.63 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.63 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.6 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.58 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.52 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.51 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.51 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.5 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.49 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.49 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 97.49 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 97.48 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 97.46 | |
| cd04882 | 65 | ACT_Bt0572_2 C-terminal ACT domain of a novel prot | 97.45 | |
| PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; P | 97.44 | |
| cd04883 | 72 | ACT_AcuB C-terminal ACT domain of the Bacillus sub | 97.44 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 97.42 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.39 | |
| cd04881 | 79 | ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin | 97.38 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 97.38 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.38 | |
| PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Valida | 97.37 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 97.36 | |
| PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Review | 97.36 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 97.36 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.35 | |
| cd04908 | 66 | ACT_Bt0572_1 N-terminal ACT domain of a novel prot | 97.35 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.33 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.33 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 97.33 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 97.32 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.32 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.31 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.29 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 97.29 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.28 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.27 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.27 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.26 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.25 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.25 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.24 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 97.2 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.19 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.19 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.17 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.16 | |
| cd04877 | 74 | ACT_TyrR N-terminal ACT domain of the TyrR protein | 97.15 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.14 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.14 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.13 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.12 | |
| TIGR00119 | 157 | acolac_sm acetolactate synthase, small subunit. ac | 97.09 | |
| PRK11895 | 161 | ilvH acetolactate synthase 3 regulatory subunit; R | 97.09 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 97.09 | |
| PRK00194 | 90 | hypothetical protein; Validated | 97.05 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 97.05 | |
| COG2150 | 167 | Predicted regulator of amino acid metabolism, cont | 97.04 | |
| PF13710 | 63 | ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. | 97.04 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.02 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 97.0 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.0 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.98 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.97 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.97 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.97 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.96 | |
| cd04887 | 74 | ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te | 96.94 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.94 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.94 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 96.93 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.93 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 96.91 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.91 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.88 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.87 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.87 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.86 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.86 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.85 | |
| CHL00100 | 174 | ilvH acetohydroxyacid synthase small subunit | 96.84 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.83 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 96.83 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.82 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.8 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.79 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.77 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.75 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.72 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.67 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.67 | |
| cd04876 | 71 | ACT_RelA-SpoT ACT domain found C-terminal of the R | 96.67 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.64 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.63 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 96.62 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 96.6 | |
| cd04870 | 75 | ACT_PSP_1 CT domains found N-terminal of phosphose | 96.58 | |
| cd04869 | 81 | ACT_GcvR_2 ACT domains that comprise the Glycine C | 96.55 | |
| cd04875 | 74 | ACT_F4HF-DF N-terminal ACT domain of formyltetrahy | 96.55 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.54 | |
| cd04893 | 77 | ACT_GcvR_1 ACT domains that comprise the Glycine C | 96.53 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.52 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.51 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.51 | |
| cd04909 | 69 | ACT_PDH-BS C-terminal ACT domain of the monofuncti | 96.49 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.48 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.44 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.42 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 96.4 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.39 | |
| cd04884 | 72 | ACT_CBS C-terminal ACT domain of the cystathionine | 96.38 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 96.36 | |
| cd04886 | 73 | ACT_ThrD-II-like C-terminal ACT domain of biodegra | 96.36 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.35 | |
| cd04926 | 72 | ACT_ACR_4 C-terminal ACT domain, of a novel type o | 96.32 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.32 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.29 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.28 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.27 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 96.24 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 96.22 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.22 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.22 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 96.14 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.13 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 96.05 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 95.99 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 95.99 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.98 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.97 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.94 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 95.94 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 95.92 | |
| cd04872 | 88 | ACT_1ZPV ACT domain proteins similar to the yet un | 95.91 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 95.9 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 95.86 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 95.85 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 95.83 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.82 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.81 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 95.81 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 95.8 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 95.8 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 95.78 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.74 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 95.72 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 95.7 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.62 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 95.62 | |
| COG4747 | 142 | ACT domain-containing protein [General function pr | 95.6 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 95.6 | |
| cd04905 | 80 | ACT_CM-PDT C-terminal ACT domain of the bifunction | 95.59 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.58 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 95.49 | |
| cd04900 | 73 | ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, | 95.43 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 95.4 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 95.37 | |
| COG1707 | 218 | ACT domain-containing protein [General function pr | 95.36 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.35 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 95.32 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.31 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.3 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 95.28 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.28 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.25 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 95.23 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.21 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 95.19 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 95.19 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 95.18 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.18 | |
| cd04899 | 70 | ACT_ACR-UUR-like_2 C-terminal ACT domains of the b | 95.17 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.17 | |
| TIGR00655 | 280 | PurU formyltetrahydrofolate deformylase. This mode | 95.16 | |
| cd04873 | 70 | ACT_UUR-ACR-like ACT domains of the bacterial sign | 95.14 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.14 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 95.13 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.13 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.11 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 95.09 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 95.08 | |
| PRK13010 | 289 | purU formyltetrahydrofolate deformylase; Reviewed | 95.06 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 95.06 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.05 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 95.05 | |
| cd04925 | 74 | ACT_ACR_2 ACT domain-containing protein which is c | 95.02 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 95.02 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 94.95 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 94.93 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.9 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 94.89 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 94.89 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.87 | |
| cd02116 | 60 | ACT ACT domains are commonly involved in specifica | 94.86 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.84 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 94.83 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 94.82 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 94.81 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 94.79 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 94.78 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.76 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.69 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.68 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 94.68 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 94.67 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 94.66 | |
| cd04880 | 75 | ACT_AAAH-PDT-like ACT domain of the nonheme iron-d | 94.64 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.55 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 94.53 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 94.51 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 94.5 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 94.49 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 94.45 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 94.42 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 94.38 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 94.35 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.35 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 94.33 | |
| PRK13376 | 525 | pyrB bifunctional aspartate carbamoyltransferase c | 94.28 | |
| PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 94.28 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 94.22 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.21 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 94.16 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.13 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 94.11 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 94.1 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 94.08 | |
| cd04896 | 75 | ACT_ACR-like_3 ACT domain-containing protein which | 94.03 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.98 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 93.93 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 93.92 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.92 | |
| PRK06027 | 286 | purU formyltetrahydrofolate deformylase; Reviewed | 93.9 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 93.87 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 93.86 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 93.82 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 93.78 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 93.78 | |
| PRK13011 | 286 | formyltetrahydrofolate deformylase; Reviewed | 93.74 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 93.74 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 93.7 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 93.69 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 93.68 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.66 | |
| cd04895 | 72 | ACT_ACR_1 ACT domain-containing protein which is c | 93.55 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 93.53 | |
| cd04928 | 68 | ACT_TyrKc Uncharacterized, N-terminal ACT domain o | 93.53 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 93.51 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.43 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.43 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.41 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 93.36 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 93.33 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 93.33 | |
| PRK10872 | 743 | relA (p)ppGpp synthetase I/GTP pyrophosphokinase; | 93.29 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 93.29 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 93.26 | |
| COG0788 | 287 | PurU Formyltetrahydrofolate hydrolase [Nucleotide | 93.25 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.17 | |
| cd04927 | 76 | ACT_ACR-like_2 Second ACT domain, of a novel type | 93.13 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 93.07 | |
| COG0440 | 163 | IlvH Acetolactate synthase, small (regulatory) sub | 93.05 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 93.05 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 93.05 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 93.04 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 93.0 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 92.93 | |
| PRK08223 | 287 | hypothetical protein; Validated | 92.89 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.87 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 92.85 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 92.83 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 92.81 | |
| COG3830 | 90 | ACT domain-containing protein [Signal transduction | 92.76 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 92.61 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 92.55 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.45 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.39 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 92.34 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.34 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 92.33 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 92.3 | |
| COG0077 | 279 | PheA Prephenate dehydratase [Amino acid transport | 92.28 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 92.28 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.26 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 92.24 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 92.09 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 92.09 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 92.07 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 92.04 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 91.99 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 91.96 | |
| PLN02602 | 350 | lactate dehydrogenase | 91.89 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 91.88 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 91.86 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 91.76 | |
| PRK11899 | 279 | prephenate dehydratase; Provisional | 91.67 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 91.58 | |
| PRK07411 | 390 | hypothetical protein; Validated | 91.58 | |
| PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3', | 91.54 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 91.52 | |
| cd04904 | 74 | ACT_AAAH ACT domain of the nonheme iron-dependent, | 91.48 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 91.45 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 91.44 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 91.04 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 90.86 | |
| COG4492 | 150 | PheB ACT domain-containing protein [General functi | 90.84 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 90.84 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.65 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 90.65 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 90.64 | |
| PRK14805 | 302 | ornithine carbamoyltransferase; Provisional | 90.58 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 90.58 | |
| cd04906 | 85 | ACT_ThrD-I_1 First of two tandem C-terminal ACT do | 90.51 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 90.45 | |
| PLN00106 | 323 | malate dehydrogenase | 90.39 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 90.36 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 90.35 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 90.23 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 90.18 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 90.17 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 90.16 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 90.13 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 90.12 | |
| cd04897 | 75 | ACT_ACR_3 ACT domain-containing protein which is c | 90.11 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.11 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.03 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 90.01 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 89.97 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 89.95 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 89.93 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 89.9 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 89.88 | |
| cd04929 | 74 | ACT_TPH ACT domain of the nonheme iron-dependent a | 89.78 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 89.78 | |
| COG2716 | 176 | GcvR Glycine cleavage system regulatory protein [A | 89.64 | |
| TIGR00691 | 683 | spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( | 89.62 | |
| cd04885 | 68 | ACT_ThrD-I Tandem C-terminal ACT domains of threon | 89.59 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 89.5 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 89.44 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 89.43 |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-112 Score=940.85 Aligned_cols=522 Identities=47% Similarity=0.723 Sum_probs=490.9
Q ss_pred eEEEecCCChhHHHHhhcC-CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChh
Q 046427 55 TVLVAEKLGEAGLDVLKNF-ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLS 133 (595)
Q Consensus 55 ~il~~~~~~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 133 (595)
|||+++++.+...+.|++. .++......+++++.+.++++|++++++.+++++++++++ |+||||+++|+|+||||++
T Consensus 1 ~vli~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~ 79 (525)
T TIGR01327 1 KVLIADPISPDGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVGVDNIDIE 79 (525)
T ss_pred CEEEeCCCCHHHHHHHHhcCcEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcccchhcHH
Confidence 5889999999988888765 3666544567889999999999999988889999999987 6999999999999999999
Q ss_pred hHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhc
Q 046427 134 AATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213 (595)
Q Consensus 134 aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~ 213 (595)
+|+++||.|+|+||+|+.+||||+++|||+++|+++.+++.+++|+|.+..+.|.+|+||||||||+|+||+.+|+++++
T Consensus 80 ~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~ 159 (525)
T TIGR01327 80 AATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA 159 (525)
T ss_pred HHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999876667899999999999999999999999999
Q ss_pred CCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHH
Q 046427 214 LGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEAL 292 (595)
Q Consensus 214 ~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL 292 (595)
|||+|++|||+.+.+.+.+.|+..+ ++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||
T Consensus 160 fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL 239 (525)
T TIGR01327 160 FGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAAL 239 (525)
T ss_pred CCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHH
Confidence 9999999999865555667787765 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChh
Q 046427 293 VRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAE 372 (595)
Q Consensus 293 ~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~ 372 (595)
++||++|+|+||+||||++||+ .++|||++|||++|||+|++|.|++.+++..+++|+.+|++|+.+.+.||.|.++.+
T Consensus 240 ~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~ 318 (525)
T TIGR01327 240 YEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD 318 (525)
T ss_pred HHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCCCch
Confidence 9999999999999999999996 589999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhCC
Q 046427 373 VISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRG 452 (595)
Q Consensus 373 ~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~G 452 (595)
..+.++||+.||+|||++++||+++ .|++++|+|+|||+ .+++|++++|+++|+|+...++|+|++||+.+|+|+|
T Consensus 319 ~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~GsfA--~~~~~~~~~a~l~GlL~~~~~~d~~~~nA~~iA~e~G 394 (525)
T TIGR01327 319 VMEKLKPYLDLAEKLGKLAGQLLDG--AVQSVEVTYRGELA--TENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERG 394 (525)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcCC--CceEEEEEEEcchh--cccccHHHHHHHHHhCccccCCCccccCHHHHHHHcC
Confidence 9999999999999999999999998 89999999999998 4699999999999999887776999999999999999
Q ss_pred ceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEE-EEeCCeeEEEEEcceEEEeecCccEEEEEecCC
Q 046427 453 LRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQ 531 (595)
Q Consensus 453 I~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~G-SvgGG~i~I~~Idgf~v~~~~~~~~Liv~~~D~ 531 (595)
|+|.|.+.+....|||++.+...+ +++++++.| |+|||++||++||||+|++.|++|+|++.|.|+
T Consensus 395 I~v~~~~~~~~~~hpNtv~i~l~~-------------~~~~~~v~G~s~gGg~~~I~~ing~~v~~~~~~~~li~~~~D~ 461 (525)
T TIGR01327 395 ITVEESKSESSPDYKNYLSVTVTG-------------DSGTVSVAGTVFGGFSPRIVEIDGFHVDLEPEGIMLIILHLDK 461 (525)
T ss_pred CEEEEEEccCCCCCCCEEEEEEEe-------------CCcEEEEEEEEecCCcEEEEEECCEEEEEecCccEEEEEecCc
Confidence 999999888778899998776543 456889999 566789999999999999999999999999999
Q ss_pred CCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEEeC
Q 046427 532 PGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595 (595)
Q Consensus 532 pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i~~ 595 (595)
||+|++|+++|++++|||++|+++|..+|++|+|++++|++++++++++|+++++|.++++++|
T Consensus 462 pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~v~~i~~ 525 (525)
T TIGR01327 462 PGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSVFVVDL 525 (525)
T ss_pred CCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhcCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-110 Score=931.92 Aligned_cols=523 Identities=49% Similarity=0.750 Sum_probs=490.8
Q ss_pred CeEEEecCCChhHHHHhhcC--CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccC
Q 046427 54 PTVLVAEKLGEAGLDVLKNF--ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVD 131 (595)
Q Consensus 54 ~~il~~~~~~~~~~~~l~~~--~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD 131 (595)
+||++++.+.+...+.|++. .++......+++|+.+.++++|++++++.+++++++++++ |+||||+++|+|+||||
T Consensus 1 m~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id 79 (526)
T PRK13581 1 MKVLVSDPISPAGLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAGVGVDNVD 79 (526)
T ss_pred CeEEEeCCCCHHHHHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECCccccccc
Confidence 37899999998888888875 3454444557889999999999999988789999999987 69999999999999999
Q ss_pred hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHH
Q 046427 132 LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRA 211 (595)
Q Consensus 132 ~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 211 (595)
+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++.+++|+|.+..+.|.+|+||||||||+|+||+.+|+++
T Consensus 80 ~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l 159 (526)
T PRK13581 80 VPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRA 159 (526)
T ss_pred HHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766678899999999999999999999999
Q ss_pred hcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHH
Q 046427 212 KGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291 (595)
Q Consensus 212 ~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~a 291 (595)
++|||+|++|||+.+.+.+...|++.+++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++|
T Consensus 160 ~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~a 239 (526)
T PRK13581 160 KAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAA 239 (526)
T ss_pred HhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHH
Confidence 99999999999987655566778887899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCCh
Q 046427 292 LVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPA 371 (595)
Q Consensus 292 L~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~ 371 (595)
|++||++|+|+||+||||++||++ ++|||++|||++|||+|++|.|++.+++..+++|+.+|++|+.+.+.||.|.++.
T Consensus 240 L~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~ 318 (526)
T PRK13581 240 LAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPSITA 318 (526)
T ss_pred HHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCCCch
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhC
Q 046427 372 EVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQR 451 (595)
Q Consensus 372 ~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~ 451 (595)
+..++++||+.+|+|||++++||+++ .|++++|+|+|||+ .++.+ ++|+|+++|+|+...++++|++||+++|+|+
T Consensus 319 ~~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~Gsfa-~t~~~-~~d~A~l~GlLg~~~dd~~~~~nA~~iA~e~ 394 (526)
T PRK13581 319 EEAEKLKPYLDLAEKLGSLAAQLADG--PIKSVEITYRGELA-EEDTE-PLTAAALKGLLSPVLGERVNYVNAPLLAKER 394 (526)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHcCC--CceEEEEEEecccc-ccccc-HHHHHHHHHhCccccCCCccccCHHHHHHHc
Confidence 99999999999999999999999988 89999999999998 77774 8999999999988776559999999999999
Q ss_pred CceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEE-EEeCCeeEEEEEcceEEEeecCccEEEEEecC
Q 046427 452 GLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGSFGVDVSLEGSIILCRQVD 530 (595)
Q Consensus 452 GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~G-SvgGG~i~I~~Idgf~v~~~~~~~~Liv~~~D 530 (595)
||+++|.+.+....|||++.+.+.+ ++++++|.| |+|||++||++||||+|++.|++|+|++.|+|
T Consensus 395 GI~~~~~~~~~~~~hpNtv~i~l~~-------------~~~~~~v~G~s~ggg~~~I~~ing~~v~~~~~~~~li~~~~D 461 (526)
T PRK13581 395 GIEVEESKSEESPDYSNLITVTVTT-------------DDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRD 461 (526)
T ss_pred CCEEEEEEecCCCCCCCEEEEEEEe-------------CCeEEEEEEEEecCCceEEEEECCEEEEeeCCceEEEEEeCC
Confidence 9999999988788899998886644 446888999 56678999999999999999999999999999
Q ss_pred CCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEEeC
Q 046427 531 QPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595 (595)
Q Consensus 531 ~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i~~ 595 (595)
+||+|++|+++|++++|||++|+++|..+|++|+|++++|++++++++++|+++++|.++++++|
T Consensus 462 ~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i~~ 526 (526)
T PRK13581 462 RPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAVEL 526 (526)
T ss_pred cCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-85 Score=662.01 Aligned_cols=396 Identities=61% Similarity=0.854 Sum_probs=376.0
Q ss_pred eEEEecCCChhHHHHhhcCC-cEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChh
Q 046427 55 TVLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLS 133 (595)
Q Consensus 55 ~il~~~~~~~~~~~~l~~~~-~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 133 (595)
+||+++++.+.+++.|++.+ +|++.+..+.||+.+.++++|++++|+.+++|+++|+++..+||+|+|+|+|+||||++
T Consensus 8 ~il~~e~~~~~~~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~ 87 (406)
T KOG0068|consen 8 KILVAESLDQACIEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLK 87 (406)
T ss_pred eEEEecccchHHHHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChh
Confidence 79999999999999999987 89998889999999999999999999999999999996667999999999999999999
Q ss_pred hHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhc
Q 046427 134 AATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213 (595)
Q Consensus 134 aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~ 213 (595)
+|+++||.|+|+|.+|+.++|||+++|+++++|+++++..+|++|+|++..+.|.+|+|||+||+|+|+||+.+|+++++
T Consensus 88 AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~k~ 167 (406)
T KOG0068|consen 88 AATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRAKA 167 (406)
T ss_pred hHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHH
Q 046427 214 LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293 (595)
Q Consensus 214 ~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~ 293 (595)
+||+|++|||..+.+.++..|++.++++|+++.||||++|||+||+|++|+|.+.|++||+|+++||++||++||+.||+
T Consensus 168 ~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv 247 (406)
T KOG0068|consen 168 MGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALV 247 (406)
T ss_pred cCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHH
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeeEEEEecCCCCCCCC--CcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCCh
Q 046427 294 RALDSGIISQAALDVFTEEPPAK--DSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPA 371 (595)
Q Consensus 294 ~aL~~g~i~ga~lDv~~~EP~~~--~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~ 371 (595)
+||++|+++||++|||+.||+.. ++.|.++|||++|||+|++|.|||.+++.++++++.+|++| .....||.|.++.
T Consensus 248 ~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~-~~~g~Vna~~v~~ 326 (406)
T KOG0068|consen 248 RALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING-NSAGSVNAPEVAL 326 (406)
T ss_pred HHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc-Cccceechhhhhh
Confidence 99999999999999999999754 78999999999999999999999999999999999999999 6678999999999
Q ss_pred hhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhC
Q 046427 372 EVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQR 451 (595)
Q Consensus 372 ~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~ 451 (595)
+...+.+||+.+++++|+++.|++.+.++...+..+|.. |. ..++..+.+-+.+|+.++..+-.+|++|+..++++|
T Consensus 327 ~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~~~~s-~~--~~d~~~l~A~i~~~~~e~i~~~~~nLvn~~~~~k~r 403 (406)
T KOG0068|consen 327 ESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYKS-FS--DGDIALLRADISKGIIEPIKDIYVNLVNADAKAKQR 403 (406)
T ss_pred hhhhccCchhHHHHHHhhhhHHHhcCCccceeeeehhhh-cc--ccceeeeHHHHhccCcchHHHHHHHHhccchhhhhh
Confidence 999999999999999999999999885555655555543 43 578888888899999988888889999999999999
Q ss_pred Cce
Q 046427 452 GLR 454 (595)
Q Consensus 452 GI~ 454 (595)
|+.
T Consensus 404 ~l~ 406 (406)
T KOG0068|consen 404 GLY 406 (406)
T ss_pred ccC
Confidence 974
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=629.85 Aligned_cols=394 Identities=31% Similarity=0.464 Sum_probs=351.3
Q ss_pred CCCCCeEEEecCCChhHHHHhhcC-C-cEEec-CCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccc
Q 046427 50 ITSKPTVLVAEKLGEAGLDVLKNF-A-NVDCS-YNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVG 126 (595)
Q Consensus 50 ~~~~~~il~~~~~~~~~~~~l~~~-~-~v~~~-~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G 126 (595)
++++++|++++.+.+...+.|++. . ++... ...+++++.+.+.++|++++++.+++++++++++ |+||||+++|+|
T Consensus 7 ~~~~~~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G 85 (409)
T PRK11790 7 PKDKIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIGCFCIG 85 (409)
T ss_pred CCCCeEEEEECCCCHHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEEECcee
Confidence 345678999999988888888765 3 55442 2356788999999999998887778999999987 699999999999
Q ss_pred ccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHH
Q 046427 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTE 206 (595)
Q Consensus 127 ~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~ 206 (595)
+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|+|.+..+.|.+|.|||+||||+|+||+.
T Consensus 86 ~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~ 165 (409)
T PRK11790 86 TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQ 165 (409)
T ss_pred cccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987655688999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 207 VARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 207 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
+|+++++|||+|++||++... ...++.. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+
T Consensus 166 vA~~~~~fGm~V~~~d~~~~~---~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 242 (409)
T PRK11790 166 LSVLAESLGMRVYFYDIEDKL---PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT 242 (409)
T ss_pred HHHHHHHCCCEEEEECCCccc---ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCc
Confidence 999999999999999986421 1123443 389999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhcCCeeEEEEecCCCCCCCCC----cccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 046427 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA 361 (595)
Q Consensus 286 ~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~----~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 361 (595)
+||++||+++|++|+|+||+||||++||++.+ +|||.+|||++|||+|++|.|++.+++..+++|+.+|++|+.+.
T Consensus 243 ~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~ 322 (409)
T PRK11790 243 VVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTL 322 (409)
T ss_pred ccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 99999999999999999999999999998763 69999999999999999999999999999999999999988777
Q ss_pred ccccCCCCChhhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhccccccccccc
Q 046427 362 TAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNL 441 (595)
Q Consensus 362 ~~vn~~~~~~~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~ 441 (595)
+.||.|
T Consensus 323 ~~vn~~-------------------------------------------------------------------------- 328 (409)
T PRK11790 323 SAVNFP-------------------------------------------------------------------------- 328 (409)
T ss_pred cceecc--------------------------------------------------------------------------
Confidence 777752
Q ss_pred ccHHHHHhhCCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEEEEeCCeeEEEEEcceEEEeecCc
Q 046427 442 VNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEG 521 (595)
Q Consensus 442 ~nA~~iA~e~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSvgGG~i~I~~Idgf~v~~~~~~ 521 (595)
.+. . . +....
T Consensus 329 ------------~~~---~----------------------------~---------------------------~~~~~ 338 (409)
T PRK11790 329 ------------EVS---L----------------------------P---------------------------EHPGG 338 (409)
T ss_pred ------------ccc---c----------------------------C---------------------------CCCCC
Confidence 000 0 0 11123
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
|.|++.|+|+||+|++|+++|++++|||++|++.|.. +.|+++|++|+.++++++++|+++++|.+|+++
T Consensus 339 ~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~--~~A~~iie~D~~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 339 HRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDG--EIGYVVIDVDADYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCC--CEEEEEEEeCCCCcHHHHHHHHcCCCeEEEEEe
Confidence 7888999999999999999999999999999997544 889999999999999999999999999999886
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-72 Score=589.61 Aligned_cols=315 Identities=48% Similarity=0.700 Sum_probs=291.8
Q ss_pred CCCeEEEecCCChhHHHHhhcCC--cEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFA--NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDN 129 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~--~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~ 129 (595)
+++++++++.+.+..++.++... ++......+.+++.+.++++|++++ +.+++++++++.+ |+||||+++|+|+||
T Consensus 2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~-~~Lk~I~~~g~Gvd~ 79 (324)
T COG0111 2 MMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAA-PNLKAIGRAGAGVDN 79 (324)
T ss_pred CcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhC-CCceEEEEccccccc
Confidence 57889999999999999887642 2333455677889999999999998 8899999999997 599999999999999
Q ss_pred cChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHH
Q 046427 130 VDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVAR 209 (595)
Q Consensus 130 iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~ 209 (595)
||+++++++||.|+|+|++|+.+||||++++||+++|+++.+++++|.|+|.+..+.|.+|+|||+||||+|+||+.+|+
T Consensus 80 id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~ 159 (324)
T COG0111 80 IDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAK 159 (324)
T ss_pred cCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999778889999999999999999999999
Q ss_pred HHhcCCCEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhc
Q 046427 210 RAKGLGMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVD 288 (595)
Q Consensus 210 ~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd 288 (595)
++++|||+|++|||+...+.+...++. ..+|+++|++||||++|+|+|++|++|||++.|++||+|++|||||||++||
T Consensus 160 ~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 160 RLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceec
Confidence 999999999999998766555555554 4579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 046427 289 EEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPM 368 (595)
Q Consensus 289 ~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~ 368 (595)
++||++||++|+|+||+||||++||++.++|||++|||++|||+|++|.|++.+++.++++|+.+|++|..+.+ |.|.
T Consensus 240 e~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~--~~~~ 317 (324)
T COG0111 240 EDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN--NAPE 317 (324)
T ss_pred HHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCC--Cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777 6665
Q ss_pred CC
Q 046427 369 VP 370 (595)
Q Consensus 369 ~~ 370 (595)
++
T Consensus 318 v~ 319 (324)
T COG0111 318 VD 319 (324)
T ss_pred cc
Confidence 44
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-70 Score=571.93 Aligned_cols=313 Identities=30% Similarity=0.495 Sum_probs=288.4
Q ss_pred CCCeEEEecCCChhHHHHhhcCCcEEecC---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGID 128 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d 128 (595)
|+++||+++.+.+...+.|++..++.... ..+.+++.+.+.++|++++++ .++++++++++ |+||+|+++|+|+|
T Consensus 1 ~~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~-p~Lk~I~~~g~G~d 78 (323)
T PRK15409 1 MKPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKM-PKLRAASTISVGYD 78 (323)
T ss_pred CCceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhC-CCCeEEEECceecc
Confidence 56899999999888888888766665322 235678889999999998764 58999999988 69999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc---ccceeeecCCEEEEEeCChHHH
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN---KYVGVSLVGKTLAVMGFGKVGT 205 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~IG~ 205 (595)
|||+++|+++||.|+|+|++++++||||++++||+++|+++.+++.+++|+|... .+.|.+|+|||+||||+|+||+
T Consensus 79 ~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~ 158 (323)
T PRK15409 79 NFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGM 158 (323)
T ss_pred cccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999743 2358899999999999999999
Q ss_pred HHHHHHh-cCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCC
Q 046427 206 EVARRAK-GLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 206 ~vA~~l~-~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
.+|++++ +|||+|++||++...+.....+++++++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||
T Consensus 159 ~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG 238 (323)
T PRK15409 159 ALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRG 238 (323)
T ss_pred HHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCc
Confidence 9999998 999999999998654444566777889999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 046427 285 GVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAV 364 (595)
Q Consensus 285 ~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~v 364 (595)
++||++||++||++|+|+||+||||++||++.++|||++|||++|||+|++|.|++.+++..+++||.+|++|+++.+.|
T Consensus 239 ~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 318 (323)
T PRK15409 239 PVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCV 318 (323)
T ss_pred cccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999998988
Q ss_pred cC
Q 046427 365 NA 366 (595)
Q Consensus 365 n~ 366 (595)
|.
T Consensus 319 n~ 320 (323)
T PRK15409 319 NP 320 (323)
T ss_pred Cc
Confidence 84
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=558.60 Aligned_cols=314 Identities=39% Similarity=0.587 Sum_probs=290.0
Q ss_pred CCCeEEEecCCChhHHHHhhcCCcEEecCCC-C-HhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYNL-S-PEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDN 129 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~~v~~~~~~-~-~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~ 129 (595)
||++++.+..+.+...+.|.+.+++...... + ..++.+..+++|++++...+++++++++.+ |+||+|+..|+||||
T Consensus 1 mk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~~G~D~ 79 (324)
T COG1052 1 MKIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRSAGYDN 79 (324)
T ss_pred CCcEEEecCcCCHHHHHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEeccccCc
Confidence 5778999999999988888877665543321 1 116788899999999986789999999998 799999999999999
Q ss_pred cChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc----cceeeecCCEEEEEeCChHHH
Q 046427 130 VDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK----YVGVSLVGKTLAVMGFGKVGT 205 (595)
Q Consensus 130 iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~----~~g~~l~gktvGIIGlG~IG~ 205 (595)
||+++|+++||.|+|+|++++++||||+++|||++.|++.++++.+|+|+|..+. ..|.+++|||+||||+|+||+
T Consensus 80 vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~ 159 (324)
T COG1052 80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQ 159 (324)
T ss_pred ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998864 678899999999999999999
Q ss_pred HHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 206 EVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 206 ~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
++|+++++|||+|++||++..++..+..++.++++++++++||+|++|||+|++|+|+||++.|++||+|++|||+|||+
T Consensus 160 avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~ 239 (324)
T COG1052 160 AVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG 239 (324)
T ss_pred HHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence 99999999999999999988655556666888899999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCc---EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 046427 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHEN---VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAAT 362 (595)
Q Consensus 286 ~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~n---vilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~ 362 (595)
+||++||++||++|+|+|||||||+.||.+.++||+.++| +++|||+|++|.|++.+|+..+++|+.+|++|+.+.+
T Consensus 240 ~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~ 319 (324)
T COG1052 240 LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPN 319 (324)
T ss_pred ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999877899998877 9999999999999999999999999999999999988
Q ss_pred cccC
Q 046427 363 AVNA 366 (595)
Q Consensus 363 ~vn~ 366 (595)
.||.
T Consensus 320 ~v~~ 323 (324)
T COG1052 320 EVNP 323 (324)
T ss_pred CCCC
Confidence 8874
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-67 Score=546.29 Aligned_cols=298 Identities=29% Similarity=0.470 Sum_probs=270.5
Q ss_pred eEEEecC--CChhHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccCh
Q 046427 55 TVLVAEK--LGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDL 132 (595)
Q Consensus 55 ~il~~~~--~~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~ 132 (595)
||++.+. +.+..++.|++.+++......+++++.+.+.++|+++++ .+++++++++.+ |+||||+++|+|+||||+
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 79 (311)
T PRK08410 2 KIVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITN-KVVIDKEVLSQL-PNLKLICITATGTNNVDI 79 (311)
T ss_pred eEEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhC-CCCeEEEEcccccccccH
Confidence 4776665 667777888776665543334578899999999998875 468999999988 599999999999999999
Q ss_pred hhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccccc------ceeeecCCEEEEEeCChHHHH
Q 046427 133 SAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKY------VGVSLVGKTLAVMGFGKVGTE 206 (595)
Q Consensus 133 ~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~------~g~~l~gktvGIIGlG~IG~~ 206 (595)
++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|.+... .+.+|+|||+||||+|+||+.
T Consensus 80 ~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~ 159 (311)
T PRK08410 80 EYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKR 159 (311)
T ss_pred HHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999985321 257899999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCch
Q 046427 207 VARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 207 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~ 286 (595)
+|+++++|||+|++|||+... ...++..++|++++++||+|++|+|+|++|+++||++.|++||||++|||+|||++
T Consensus 160 vA~~~~~fgm~V~~~d~~~~~---~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 160 VAKIAQAFGAKVVYYSTSGKN---KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred HHHHHhhcCCEEEEECCCccc---cccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence 999999999999999996532 12356677999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccC---CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 046427 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLH---ENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGE 358 (595)
Q Consensus 287 vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~---~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~ 358 (595)
||++||++||++|+|+ |+||||++||++.++|||.+ |||++|||+|++|.|++.++...+++|+.+|++|+
T Consensus 237 VDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~ 310 (311)
T PRK08410 237 VNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG 310 (311)
T ss_pred cCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 99999999999999999986 89999999999999999999999999999999885
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=548.91 Aligned_cols=313 Identities=39% Similarity=0.630 Sum_probs=286.8
Q ss_pred CCCeEEEecCCChhHHHHhhcCCcEEecC---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGID 128 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d 128 (595)
|++||++++.+.+...+.|++..++.... ..+.+++.+.++++|++++++.+++++++++++ |+||||+++|+|+|
T Consensus 1 ~~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d 79 (333)
T PRK13243 1 MKPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYAVGYD 79 (333)
T ss_pred CCceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecCcccc
Confidence 56899999998888888887755554322 246788999999999999876678999999987 69999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc-------ccceeeecCCEEEEEeCC
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN-------KYVGVSLVGKTLAVMGFG 201 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~-------~~~g~~l~gktvGIIGlG 201 (595)
|||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+. .+.|.+|+||||||||+|
T Consensus 80 ~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G 159 (333)
T PRK13243 80 NIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFG 159 (333)
T ss_pred ccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcC
Confidence 9999999999999999999999999999999999999999999999999999752 125789999999999999
Q ss_pred hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 202 KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 202 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
+||+.+|+++++|||+|++||++.........++...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+
T Consensus 160 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~ 239 (333)
T PRK13243 160 RIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNT 239 (333)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence 99999999999999999999998654444456677779999999999999999999999999999999999999999999
Q ss_pred cCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 046427 282 ARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA 361 (595)
Q Consensus 282 arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 361 (595)
|||+++|++||+++|++|+|+||+||||+.||++ ++|||++|||++|||+|++|.|++.+++..+++|+.+|++|+.+.
T Consensus 240 aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~ 318 (333)
T PRK13243 240 ARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPP 318 (333)
T ss_pred cCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999987 899999999999999999999999999999999999999999888
Q ss_pred ccccC
Q 046427 362 TAVNA 366 (595)
Q Consensus 362 ~~vn~ 366 (595)
+.||.
T Consensus 319 ~~v~~ 323 (333)
T PRK13243 319 TLVNR 323 (333)
T ss_pred cccCH
Confidence 88874
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=537.11 Aligned_cols=303 Identities=30% Similarity=0.469 Sum_probs=268.8
Q ss_pred eEEEecCC----ChhHHHHhhcC-CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccc
Q 046427 55 TVLVAEKL----GEAGLDVLKNF-ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDN 129 (595)
Q Consensus 55 ~il~~~~~----~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~ 129 (595)
||++.+.. .+...+.|++. .++.+....+.+++.+.+.++|+++++ .+++++++++++ |+||||+++|+|+||
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 79 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISN-KVALDAAALAAA-PQLKLILVAATGTNN 79 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhC-CCCeEEEEcCccccc
Confidence 46666542 23445566643 455554455678899999999998865 468999999987 699999999999999
Q ss_pred cChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc------cceeeecCCEEEEEeCChH
Q 046427 130 VDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK------YVGVSLVGKTLAVMGFGKV 203 (595)
Q Consensus 130 iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~gktvGIIGlG~I 203 (595)
||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|.+.. +.+.+|+|||+||||+|+|
T Consensus 80 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~I 159 (317)
T PRK06487 80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL 159 (317)
T ss_pred cCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHH
Confidence 9999999999999999999999999999999999999999999999999997642 2356899999999999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccC
Q 046427 204 GTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 204 G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
|+.+|+++++|||+|++||++... ..+..++|++++++||+|++|+|+|++|+++||++.|++||+|++|||+||
T Consensus 160 G~~vA~~l~~fgm~V~~~~~~~~~-----~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 160 GGAVARLAEAFGMRVLIGQLPGRP-----ARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTAR 234 (317)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCc-----ccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCC
Confidence 999999999999999999986432 123456899999999999999999999999999999999999999999999
Q ss_pred CchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCccccc--CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 046427 284 GGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVL--HENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA 361 (595)
Q Consensus 284 g~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~--~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 361 (595)
|++||++||++||++|+|+||+||||++||++.++|||. +|||++|||+|++|.|++.+++..+++||.+|++|++.
T Consensus 235 G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~- 313 (317)
T PRK06487 235 GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL- 313 (317)
T ss_pred ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence 999999999999999999999999999999998999995 89999999999999999999999999999999998743
Q ss_pred cccc
Q 046427 362 TAVN 365 (595)
Q Consensus 362 ~~vn 365 (595)
+.||
T Consensus 314 ~~v~ 317 (317)
T PRK06487 314 RVVS 317 (317)
T ss_pred cCCC
Confidence 4443
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=539.09 Aligned_cols=339 Identities=32% Similarity=0.409 Sum_probs=291.1
Q ss_pred CCCCCCeEEEecCCChh-HHHHhhcC-CcEEecC----CCCHhHHhhhc-CCceEEEEcCCCCCCHHHHhccCC-CceEE
Q 046427 49 FITSKPTVLVAEKLGEA-GLDVLKNF-ANVDCSY----NLSPEELCTKI-SLCDALIVRSGTKVTREVFESSAG-RLKVV 120 (595)
Q Consensus 49 ~~~~~~~il~~~~~~~~-~~~~l~~~-~~v~~~~----~~~~~el~~~i-~~~d~li~~~~~~i~~~~l~~~~~-~Lk~I 120 (595)
-+..+++|+++..+.+. ..+.|++. .++.... ..+.+++.+.+ .++|+++++..++++++++++++. +||+|
T Consensus 11 ~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I 90 (386)
T PLN02306 11 NPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAF 90 (386)
T ss_pred CCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEE
Confidence 34568899999998774 67788765 4664321 25788898887 579999988767899999999842 47999
Q ss_pred EEccccccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc---cceeeecCCEEEE
Q 046427 121 GRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK---YVGVSLVGKTLAV 197 (595)
Q Consensus 121 ~~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~---~~g~~l~gktvGI 197 (595)
++.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|.++. ..|.+|.||||||
T Consensus 91 ~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGI 170 (386)
T PLN02306 91 SNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGV 170 (386)
T ss_pred EECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999986432 3578999999999
Q ss_pred EeCChHHHHHHHHHh-cCCCEEEEECCCCcHHHH---HHcC------------Ccc-cCHHHhccccCEEEEeCCCChhc
Q 046427 198 MGFGKVGTEVARRAK-GLGMNVIAHDPYAQADRA---RATG------------VGL-VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 198 IGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~~~a---~~~g------------~~~-~~l~ell~~aD~V~l~~Plt~~t 260 (595)
||+|+||+.+|++++ +|||+|++||++...... ...+ ++. .+|++++++||+|++|+|+|++|
T Consensus 171 iG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T 250 (386)
T PLN02306 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTT 250 (386)
T ss_pred ECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhh
Confidence 999999999999985 999999999998643211 1121 122 48999999999999999999999
Q ss_pred cccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHH
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQ 340 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~ 340 (595)
++||+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++ ++|||++|||++|||+|++|.+++
T Consensus 251 ~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~ 329 (386)
T PLN02306 251 YHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTR 329 (386)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999974 678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcccc--CCCCChh-hhhcccchhHHHHHHH
Q 046427 341 EGVAIEIAEAVIGALKGELAATAVN--APMVPAE-VISELAPFVTLAEKLG 388 (595)
Q Consensus 341 ~~~~~~~~~~l~~~l~g~~~~~~vn--~~~~~~~-~~~~~~p~~~la~rlG 388 (595)
++++..+++|+.+|++|+.+.+.|| .+.+.+. -.+..+|-+.-+..+|
T Consensus 330 ~~~~~~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (386)
T PLN02306 330 EGMATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALG 380 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCCcccccchhhcccccCCCCcCCcceechhhhC
Confidence 9999999999999999999999999 3333321 1224456666555555
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-64 Score=526.13 Aligned_cols=273 Identities=32% Similarity=0.474 Sum_probs=251.9
Q ss_pred CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCCCchHHHHHHHHH
Q 046427 81 NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIAL 160 (595)
Q Consensus 81 ~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l 160 (595)
..+++|+.+.+.++|++++ +.+++++++++++ |+||||++.|+|+||||+++|+++||.|+|+||+++.+||||++++
T Consensus 32 ~~~~~~~~~~~~~~d~ii~-~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l 109 (314)
T PRK06932 32 HTSAEQTIERAKDADIVIT-SKVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGM 109 (314)
T ss_pred CCChHHHHHHhCCCcEEEE-eCCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHH
Confidence 4568899999999998876 4568999999987 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHchHHHHHHHHcCcccccc------cceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC
Q 046427 161 LTAMARNIAQADASVKAGKWQRNK------YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234 (595)
Q Consensus 161 ~l~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g 234 (595)
||+++|+++.+++.+++|+|.+.. +.+.+|+|||+||||+|.||+.+|+++++|||+|++||+..... ..
T Consensus 110 ~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~----~~ 185 (314)
T PRK06932 110 IFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV----CR 185 (314)
T ss_pred HHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc----cc
Confidence 999999999999999999997531 23568999999999999999999999999999999999754211 12
Q ss_pred CcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCC
Q 046427 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP 314 (595)
Q Consensus 235 ~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~ 314 (595)
..+.+|++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+
T Consensus 186 ~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 186 EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccc----cCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 046427 315 AKDSKLV----LHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGEL 359 (595)
Q Consensus 315 ~~~~~L~----~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~ 359 (595)
+.++||| ++|||++|||+|++|.|+++++...+++|+.+|++|+.
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred CCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999998 48999999999999999999999999999999998763
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=525.46 Aligned_cols=311 Identities=27% Similarity=0.405 Sum_probs=275.1
Q ss_pred cCCCCCCeEEEecCCChhH----HHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEc
Q 046427 48 TFITSKPTVLVAEKLGEAG----LDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRA 123 (595)
Q Consensus 48 ~~~~~~~~il~~~~~~~~~----~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~ 123 (595)
-+.++++|||++.+..+.. .+.++....+ .....+.+|+.+.+.++|+++++ ..++++++++.+ |+||||++.
T Consensus 13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~ 89 (347)
T PLN02928 13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYPFI-QVDAVAREDVPDVIANYDICVPK-MMRLDADIIARA-SQMKLIMQF 89 (347)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHhhcCCee-EecCCCHHHHHHHhcCCcEEEEC-CCCCCHHHHhcC-CCceEEEEC
Confidence 4567889999998877764 3444433322 22345678899999999998875 458999999987 699999999
Q ss_pred cccccccChhhHHhCCceEEeCCCC---CchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC
Q 046427 124 GVGIDNVDLSAATEHGCLVVNAPTA---NTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF 200 (595)
Q Consensus 124 g~G~d~iD~~aa~~~gI~V~n~p~~---~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl 200 (595)
|+|+||||+++|.++||.|+|+|++ ++.+||||++++||+++|+++.+++.+++|.|.+ ..+.+|+|||+||||+
T Consensus 90 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvGIiG~ 167 (347)
T PLN02928 90 GVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE--PIGDTLFGKTVFILGY 167 (347)
T ss_pred CcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc--ccccCCCCCEEEEECC
Confidence 9999999999999999999999985 7899999999999999999999999999999975 3567899999999999
Q ss_pred ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHH-------------cCCcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 201 GKVGTEVARRAKGLGMNVIAHDPYAQADRARA-------------TGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 201 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~-------------~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
|.||+.+|+++++|||+|++||++........ .+....+|++++++||+|++|+|+|++|+++|+++
T Consensus 168 G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~ 247 (347)
T PLN02928 168 GAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDE 247 (347)
T ss_pred CHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHH
Confidence 99999999999999999999999753222111 11245689999999999999999999999999999
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEI 347 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~ 347 (595)
.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++|||++||+++|||+|++|.+++.+++..+
T Consensus 248 ~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~ 327 (347)
T PLN02928 248 FLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIV 327 (347)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcc
Q 046427 348 AEAVIGALKGELAATA 363 (595)
Q Consensus 348 ~~~l~~~l~g~~~~~~ 363 (595)
++|+.+|++|++..++
T Consensus 328 ~~nl~~~~~g~~~~~~ 343 (347)
T PLN02928 328 GDAALQLHAGRPLTGI 343 (347)
T ss_pred HHHHHHHHCCCCCCce
Confidence 9999999999876543
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=523.55 Aligned_cols=291 Identities=30% Similarity=0.420 Sum_probs=264.5
Q ss_pred HHhhcCC-cEEecC--CCCHhHHhhhcCCceEEEEcCC--CCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceE
Q 046427 68 DVLKNFA-NVDCSY--NLSPEELCTKISLCDALIVRSG--TKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLV 142 (595)
Q Consensus 68 ~~l~~~~-~v~~~~--~~~~~el~~~i~~~d~li~~~~--~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V 142 (595)
++|++.+ ++.... ..+.+++.+.+.++|++|+... .++++++++++ |+||||+++|+|+||||+++|+++||.|
T Consensus 69 ~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~gI~V 147 (386)
T PLN03139 69 DWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAGLTV 147 (386)
T ss_pred HHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCCeEE
Confidence 4455543 443322 2456788999999999998642 46999999987 6999999999999999999999999999
Q ss_pred EeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc--ccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE
Q 046427 143 VNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN--KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220 (595)
Q Consensus 143 ~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~ 220 (595)
+|+||+|+.+||||++++||++.|++.++++.+++|.|... ...+.+|.||||||||+|+||+.+|+++++|||+|++
T Consensus 148 ~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~ 227 (386)
T PLN03139 148 AEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY 227 (386)
T ss_pred EECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999999999853 2357899999999999999999999999999999999
Q ss_pred ECCCC-cHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 221 HDPYA-QADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 221 ~d~~~-~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
||++. ..+...+.|+..+ ++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||++||++
T Consensus 228 ~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 228 HDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred ECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence 99975 3444456677654 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 046427 299 GIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGEL 359 (595)
Q Consensus 299 g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~ 359 (595)
|+|+||+||||++||++.++|||.+||+++|||+||.|.+++.+++..+++||.+|++|+.
T Consensus 308 G~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~ 368 (386)
T PLN03139 308 GHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGED 368 (386)
T ss_pred CCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999985
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-63 Score=524.55 Aligned_cols=312 Identities=29% Similarity=0.448 Sum_probs=274.9
Q ss_pred CCCCeEEEecCCChhHH-HHhhcCC-cEEecC--CCCHhHHhhhcCCceEEEEcC--CCCCCHHHHhccCCCceEEEEcc
Q 046427 51 TSKPTVLVAEKLGEAGL-DVLKNFA-NVDCSY--NLSPEELCTKISLCDALIVRS--GTKVTREVFESSAGRLKVVGRAG 124 (595)
Q Consensus 51 ~~~~~il~~~~~~~~~~-~~l~~~~-~v~~~~--~~~~~el~~~i~~~d~li~~~--~~~i~~~~l~~~~~~Lk~I~~~g 124 (595)
+.+|--|+-.--.+.++ +.|++.+ ++.... ..+.+++.+.+.++|++|++. ..++++++++++ |+||||+++|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g 122 (385)
T PRK07574 44 DFTPGELLGSVSGELGLRKFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAG 122 (385)
T ss_pred cCCCcceeeeccChhhHHHHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECC
Confidence 44454344332334443 5566653 554432 235788899999999999863 357999999987 6999999999
Q ss_pred ccccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc--cceeeecCCEEEEEeCCh
Q 046427 125 VGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK--YVGVSLVGKTLAVMGFGK 202 (595)
Q Consensus 125 ~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~ 202 (595)
+|+||||+++|+++||.|+|+|++|+.+||||++++||++.|++...++.+++|+|.+.. ..+.+|+||||||||+|+
T Consensus 123 ~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~ 202 (385)
T PRK07574 123 IGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGR 202 (385)
T ss_pred cccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCH
Confidence 999999999999999999999999999999999999999999999999999999998643 246899999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEe
Q 046427 203 VGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 203 IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
||+.+|++|++|||+|++||++. ..+.....|+.. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||
T Consensus 203 IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN 282 (385)
T PRK07574 203 IGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVN 282 (385)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEE
Confidence 99999999999999999999986 334444567653 6899999999999999999999999999999999999999999
Q ss_pred ccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 046427 281 VARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELA 360 (595)
Q Consensus 281 ~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~ 360 (595)
+|||+++|++||++||++|+|+||+||||++||++.++|||.+||+++|||+|++|.|++.+++..+++||.+|++|++.
T Consensus 283 ~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~ 362 (385)
T PRK07574 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPI 362 (385)
T ss_pred CCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred Ccc
Q 046427 361 ATA 363 (595)
Q Consensus 361 ~~~ 363 (595)
++.
T Consensus 363 ~~~ 365 (385)
T PRK07574 363 RDE 365 (385)
T ss_pred CCC
Confidence 553
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-60 Score=497.42 Aligned_cols=312 Identities=27% Similarity=0.424 Sum_probs=275.9
Q ss_pred CCCCeEEEecCCChhHHHHhhcCCcEEe--cCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCC--ceEEEEcccc
Q 046427 51 TSKPTVLVAEKLGEAGLDVLKNFANVDC--SYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR--LKVVGRAGVG 126 (595)
Q Consensus 51 ~~~~~il~~~~~~~~~~~~l~~~~~v~~--~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~--Lk~I~~~g~G 126 (595)
+|+++|+++++.....++.+.+..++++ ......+|+.+.+.++|++++++.++++++++++++ + ||+|+++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~lk~I~~~~~G 79 (332)
T PRK08605 1 MTKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLN-ELGIKQIAQRSAG 79 (332)
T ss_pred CcEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhh-hcCceEEEEcccc
Confidence 4678899988888788877765444432 222234566688999999999887899999999884 5 9999999999
Q ss_pred ccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc-ccceeeecCCEEEEEeCChHHH
Q 046427 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN-KYVGVSLVGKTLAVMGFGKVGT 205 (595)
Q Consensus 127 ~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~ 205 (595)
+||||+++|+++||.|+|+|++++.+||||++++||+++|++...++.+++|.|... ...|.+|+|++|||||+|.||+
T Consensus 80 ~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~ 159 (332)
T PRK08605 80 FDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGL 159 (332)
T ss_pred cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHH
Confidence 999999999999999999999999999999999999999999999999999988432 2357899999999999999999
Q ss_pred HHHHHH-hcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccC
Q 046427 206 EVARRA-KGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 206 ~vA~~l-~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
++|+++ ++|||+|++||++..... ..++... ++++++++||+|++|+|++++|+++++++.++.||+|++|||++|
T Consensus 160 ~vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sR 237 (332)
T PRK08605 160 AVAKIFAKGYGSDVVAYDPFPNAKA--ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCAR 237 (332)
T ss_pred HHHHHHHhcCCCEEEEECCCccHhH--HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCC
Confidence 999999 799999999998764321 2234444 899999999999999999999999999999999999999999999
Q ss_pred CchhcHHHHHHHHhcCCeeEEEEecCCCCC--CCCCc-----------ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHH
Q 046427 284 GGVVDEEALVRALDSGIISQAALDVFTEEP--PAKDS-----------KLVLHENVTVTPHLGASTTEAQEGVAIEIAEA 350 (595)
Q Consensus 284 g~~vd~~aL~~aL~~g~i~ga~lDv~~~EP--~~~~~-----------~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~ 350 (595)
|.++|+++|+++|++|+|+||+||||+.|| +|.++ +||.+|||++|||+|++|.|++++++..+++|
T Consensus 238 G~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n 317 (332)
T PRK08605 238 GSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDA 317 (332)
T ss_pred CcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 35554 49999999999999999999999999999999
Q ss_pred HHHHHcCCCCCcccc
Q 046427 351 VIGALKGELAATAVN 365 (595)
Q Consensus 351 l~~~l~g~~~~~~vn 365 (595)
+.+|++|+...+.+|
T Consensus 318 ~~~~~~g~~~~~~~~ 332 (332)
T PRK08605 318 TLEVLQTGTTRLRVN 332 (332)
T ss_pred HHHHHcCCCCCCCcC
Confidence 999999998888776
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=493.24 Aligned_cols=308 Identities=25% Similarity=0.368 Sum_probs=266.2
Q ss_pred CeEEEecCCChh---HHHHhhcCC-cEEec-CCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccC-CCceEEEEccccc
Q 046427 54 PTVLVAEKLGEA---GLDVLKNFA-NVDCS-YNLSPEELCTKISLCDALIVRSGTKVTREVFESSA-GRLKVVGRAGVGI 127 (595)
Q Consensus 54 ~~il~~~~~~~~---~~~~l~~~~-~v~~~-~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~-~~Lk~I~~~g~G~ 127 (595)
+||++...-..+ ..+.+++.. ++... ...+ +|+.+.+.++|++++...++++++++++++ ++||+|++.|+|+
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~ 80 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLS-SATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGF 80 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCCCCC-HHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccccc
Confidence 567776543322 234455542 44442 2344 445889999999998766689999999984 3899999999999
Q ss_pred cccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc-ccceeeecCCEEEEEeCChHHHH
Q 046427 128 DNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN-KYVGVSLVGKTLAVMGFGKVGTE 206 (595)
Q Consensus 128 d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~~ 206 (595)
||||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|... ...+.+|+|++|||||+|.||+.
T Consensus 81 d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~ 160 (330)
T PRK12480 81 DMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAA 160 (330)
T ss_pred chhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999976422 24578999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 207 VARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 207 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
+|+++++|||+|++||++...... .... .++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+
T Consensus 161 vA~~L~~~G~~V~~~d~~~~~~~~---~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 161 TAKIYAGFGATITAYDAYPNKDLD---FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred HHHHHHhCCCEEEEEeCChhHhhh---hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 999999999999999987632211 1223 379999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhcCCeeEEEEecCCCCCCC-------------CCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 046427 286 VVDEEALVRALDSGIISQAALDVFTEEPPA-------------KDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVI 352 (595)
Q Consensus 286 ~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~-------------~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~ 352 (595)
++|++||++||++|+++||+||||+.||+. ..+|||++|||++|||+|++|.|++.++...+++|+.
T Consensus 238 ~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~ 317 (330)
T PRK12480 238 VINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAAL 317 (330)
T ss_pred ccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999962 1247999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccc
Q 046427 353 GALKGELAATAVN 365 (595)
Q Consensus 353 ~~l~g~~~~~~vn 365 (595)
+|++|+...+.+|
T Consensus 318 ~~~~~~~~~~~~~ 330 (330)
T PRK12480 318 SVINTGTCETRLN 330 (330)
T ss_pred HHHhCCCCcccCC
Confidence 9999999888776
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-57 Score=465.69 Aligned_cols=282 Identities=33% Similarity=0.507 Sum_probs=255.7
Q ss_pred CCHhHHhhhcCCceEEEEcCC-CCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCCCchHHHHHHHHH
Q 046427 82 LSPEELCTKISLCDALIVRSG-TKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIAL 160 (595)
Q Consensus 82 ~~~~el~~~i~~~d~li~~~~-~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l 160 (595)
.+.++....+.++...+.... ...+.+.+.+.+|+||+|+++|+|+||||+++|++|||+|+|+|+.++++|||+++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~l 128 (336)
T KOG0069|consen 49 LIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSL 128 (336)
T ss_pred cchhhhhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHH
Confidence 345566666776655554332 3578888888778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHchHHHHHHHHcCccccc--ccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcc
Q 046427 161 LTAMARNIAQADASVKAGKWQRN--KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGL 237 (595)
Q Consensus 161 ~l~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~ 237 (595)
+|.+.|++..+++.+++|+|... ...|..+.||||||+|+|+||+.+|++|++||+.+.+++++. ..+.+.+.+...
T Consensus 129 il~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~ 208 (336)
T KOG0069|consen 129 LLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEF 208 (336)
T ss_pred HHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccc
Confidence 99999999999999999999322 235678999999999999999999999999998888988876 466667777778
Q ss_pred cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCC
Q 046427 238 VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD 317 (595)
Q Consensus 238 ~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~ 317 (595)
+++++++++||+|++|||+|++|++++|++.|.+||+|++|||++||+++|++++++||++|+|+|||||||++|| +.+
T Consensus 209 ~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~ 287 (336)
T KOG0069|consen 209 VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVD 287 (336)
T ss_pred cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999 789
Q ss_pred cccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 046427 318 SKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAV 364 (595)
Q Consensus 318 ~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~v 364 (595)
++|++++|+++|||+|+.|.+++.+|+..++.|+.+++.|++....+
T Consensus 288 ~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~ 334 (336)
T KOG0069|consen 288 HPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPV 334 (336)
T ss_pred cchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence 99999999999999999999999999999999999999999765544
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=472.28 Aligned_cols=273 Identities=28% Similarity=0.417 Sum_probs=243.4
Q ss_pred CeEEEecCCChhHHHHhhcCCcEEecCC--CCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccC
Q 046427 54 PTVLVAEKLGEAGLDVLKNFANVDCSYN--LSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVD 131 (595)
Q Consensus 54 ~~il~~~~~~~~~~~~l~~~~~v~~~~~--~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD 131 (595)
+||++.+.++ ...+.+++.++|.+... .+.+ .++++|++++++.+++++++++ . ++||+|+++++|+||||
T Consensus 1 mkIl~d~~~~-~~~~~~~~~~ev~~~~~~~~~~~----~l~daD~liv~s~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD 73 (378)
T PRK15438 1 MKILVDENMP-YARELFSRLGEVKAVPGRPIPVA----QLADADALMVRSVTKVNESLLA-G-KPIKFVGTATAGTDHVD 73 (378)
T ss_pred CEEEEeCCcc-hHHHHHhhcCcEEEeCCCCCCHH----HhCCCcEEEEcCCCCCCHHHhc-C-CCCeEEEECcccccccC
Confidence 4789988774 66677777778776432 2333 4789999999998999999996 4 59999999999999999
Q ss_pred hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHH
Q 046427 132 LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRA 211 (595)
Q Consensus 132 ~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 211 (595)
+++|+++||.|+|+||+|+.+||||++++||+++|+ .|.+|.||||||||+|+||+.+|+++
T Consensus 74 ~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~------------------~g~~L~gktvGIIG~G~IG~~vA~~l 135 (378)
T PRK15438 74 EAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------------------DGFSLHDRTVGIVGVGNVGRRLQARL 135 (378)
T ss_pred HHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc------------------CCCCcCCCEEEEECcCHHHHHHHHHH
Confidence 999999999999999999999999999999999995 13579999999999999999999999
Q ss_pred hcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChh----ccccccHHHHhcCCCceEEEeccCCchh
Q 046427 212 KGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPA----TSKMFNDEAFFKMKKGVRIVNVARGGVV 287 (595)
Q Consensus 212 ~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~----t~~li~~~~l~~mk~gailiN~arg~~v 287 (595)
++|||+|++|||..... .....+.+|++++++||+|++|+|+|++ |++|++++.|++||+|++|||+|||++|
T Consensus 136 ~a~G~~V~~~dp~~~~~---~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vV 212 (378)
T PRK15438 136 EALGIKTLLCDPPRADR---GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVV 212 (378)
T ss_pred HHCCCEEEEECCccccc---ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhc
Confidence 99999999999854211 1223456899999999999999999996 9999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 046427 288 DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALK 356 (595)
Q Consensus 288 d~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~ 356 (595)
|++||+++|++|++.||+||||++||. .+++|+.+++ ++|||+||+|.|++.+...++++++.+|+.
T Consensus 213 De~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~ 279 (378)
T PRK15438 213 DNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIG 279 (378)
T ss_pred CHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999996 5778988776 899999999999999999999999999993
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=468.54 Aligned_cols=284 Identities=28% Similarity=0.397 Sum_probs=248.7
Q ss_pred CeEEEecCCChhHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChh
Q 046427 54 PTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLS 133 (595)
Q Consensus 54 ~~il~~~~~~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 133 (595)
+||++.+.++ ...+.+++.+++.+... .+...+.++++|++++++.+++++++++. ++||||+++++|+||||++
T Consensus 1 mkI~~d~~~p-~~~~~~~~~~~v~~~~~--~~~~~~~l~daD~liv~~~t~v~~~ll~~--~~Lk~I~~~~~G~D~iD~~ 75 (381)
T PRK00257 1 MKIVADENIP-LLDAFFAGFGEIRRLPG--RAFDRAAVRDADVLLVRSVTRVDRALLEG--SRVRFVGTCTIGTDHLDLD 75 (381)
T ss_pred CEEEEecCch-hHHHHHhhCCcEEEcCC--cccCHHHhCCceEEEEeCCCCCCHHHhcC--CCCeEEEECCccccccCHH
Confidence 5788888875 33556666667765432 11223467899999999988999999974 5899999999999999999
Q ss_pred hHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhc
Q 046427 134 AATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213 (595)
Q Consensus 134 aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~ 213 (595)
+|+++||.|+|+||+|+.+||||++++||+++|+ .|.++.||||||||+|+||+.+|+++++
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~------------------~g~~l~gktvGIIG~G~IG~~va~~l~a 137 (381)
T PRK00257 76 YFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER------------------EGVDLAERTYGVVGAGHVGGRLVRVLRG 137 (381)
T ss_pred HHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc------------------cCCCcCcCEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999884 2457999999999999999999999999
Q ss_pred CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCCh----hccccccHHHHhcCCCceEEEeccCCchhcH
Q 046427 214 LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTP----ATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289 (595)
Q Consensus 214 ~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~----~t~~li~~~~l~~mk~gailiN~arg~~vd~ 289 (595)
|||+|++|||.... ...+..+.++++++++||+|++|+|+|+ .|+++|+++.|++||+|++|||+|||++||+
T Consensus 138 ~G~~V~~~Dp~~~~---~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 138 LGWKVLVCDPPRQE---AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDN 214 (381)
T ss_pred CCCEEEEECCcccc---cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCH
Confidence 99999999985421 1223456799999999999999999999 5999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 046427 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVN 365 (595)
Q Consensus 290 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 365 (595)
+||+++|++|+++||+||||++||. .+++|+.. |+++|||+||+|.|++.++..++++|+.+|+.+.......+
T Consensus 215 ~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~~~~~~ 288 (381)
T PRK00257 215 QALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPARVSLTD 288 (381)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCccchhc
Confidence 9999999999999999999999996 57889975 99999999999999999999999999999998876544333
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-55 Score=457.98 Aligned_cols=267 Identities=24% Similarity=0.292 Sum_probs=235.2
Q ss_pred cCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhh-----HHhCCceEEeCCC-CCchHHHHHHHHHHHHH
Q 046427 91 ISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSA-----ATEHGCLVVNAPT-ANTIAAAEHGIALLTAM 164 (595)
Q Consensus 91 i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~a-----a~~~gI~V~n~p~-~~~~~vAE~~l~l~l~~ 164 (595)
..++|+++++.. +.++++ . ++||||++.|+|+|++|... +..+||.|+|+++ +++.+||||++++||++
T Consensus 36 ~~~a~~~~~~~~---~~~~l~-~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~ 110 (312)
T PRK15469 36 NDPADYALVWHP---PVEMLA-G-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHW 110 (312)
T ss_pred CccCeEEEEeCC---ChHHhc-c-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHH
Confidence 478999887542 567775 3 59999999999999998322 3458999999975 68999999999999999
Q ss_pred HHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhc
Q 046427 165 ARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAI 244 (595)
Q Consensus 165 ~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell 244 (595)
+|+++.+.+.+++|+|.+. .+.++.||||||||+|.||+.+|+++++|||+|++||++.........-....++++++
T Consensus 111 ~r~~~~~~~~~~~~~w~~~--~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l 188 (312)
T PRK15469 111 FRRFDDYQALQNSSHWQPL--PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL 188 (312)
T ss_pred HcChHHHHHHHHhCCcCCC--CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence 9999999999999999753 45689999999999999999999999999999999998653211000011235899999
Q ss_pred cccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCC
Q 046427 245 STADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 245 ~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||++||++|+++||+||||++||+|.++|||.+|
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 046427 325 NVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNA 366 (595)
Q Consensus 325 nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~ 366 (595)
|+++|||+|++|.++ ++...+++|+.+|++|+++.+.|+.
T Consensus 269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~~V~~ 308 (312)
T PRK15469 269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCGQVDR 308 (312)
T ss_pred CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence 999999999999886 4678889999999999999888874
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=450.52 Aligned_cols=283 Identities=27% Similarity=0.404 Sum_probs=244.5
Q ss_pred eEEEecCCChhHHHHhhcC---CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccC
Q 046427 55 TVLVAEKLGEAGLDVLKNF---ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVD 131 (595)
Q Consensus 55 ~il~~~~~~~~~~~~l~~~---~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD 131 (595)
++++..++.+...+.+.+. .++.... ...++|+++++.. . ..+ ++||||++.|+|+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~------~-~~~-~~Lk~I~~~~aG~D~id 64 (303)
T PRK06436 2 NVYVNFPMSKKLLEICRDILDLDDVHWYP---------DYYDAEAILIKGR------Y-VPG-KKTKMIQSLSAGVDHID 64 (303)
T ss_pred eEEEEccCCHHHHHHHHhhcccceeEecc---------ccCCCCEEEecCC------c-CCC-CCeEEEEECCcccCccc
Confidence 3666678888877765542 2333211 2568888876542 1 223 59999999999999999
Q ss_pred hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHH
Q 046427 132 LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRA 211 (595)
Q Consensus 132 ~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 211 (595)
+++|+++||.++|. |+++.+||||++++||+++|+++..++.+++|+|.+. .+.+|+|||+||||+|+||+.+|+++
T Consensus 65 ~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~--~~~~L~gktvgIiG~G~IG~~vA~~l 141 (303)
T PRK06436 65 VSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS--PTKLLYNKSLGILGYGGIGRRVALLA 141 (303)
T ss_pred HHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--CCCCCCCCEEEEECcCHHHHHHHHHH
Confidence 99999998887774 8999999999999999999999999999999999864 46799999999999999999999999
Q ss_pred hcCCCEEEEECCCCcHHHHHHcCC--cccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcH
Q 046427 212 KGLGMNVIAHDPYAQADRARATGV--GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289 (595)
Q Consensus 212 ~~~G~~V~~~d~~~~~~~a~~~g~--~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~ 289 (595)
++|||+|++||++... .++ ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|+
T Consensus 142 ~afG~~V~~~~r~~~~-----~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 142 KAFGMNIYAYTRSYVN-----DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred HHCCCEEEEECCCCcc-----cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 9999999999987532 122 245899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 046427 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG-ASTTEAQEGVAIEIAEAVIGALKGELAATAVNA 366 (595)
Q Consensus 290 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~-~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~ 366 (595)
++|+++|++|+++||+||||++||++.++ .+||+++|||++ +.|.|+++++...+++|+.+|++|++ .+.||.
T Consensus 217 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~ 290 (303)
T PRK06436 217 NDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVRK 290 (303)
T ss_pred HHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEch
Confidence 99999999999999999999999987665 589999999976 58999999999999999999999876 577764
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-46 Score=358.59 Aligned_cols=176 Identities=45% Similarity=0.739 Sum_probs=159.3
Q ss_pred HHHHHHHHHchHHHHHHHHcCcc-cccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH-HHHcCC
Q 046427 158 IALLTAMARNIAQADASVKAGKW-QRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR-ARATGV 235 (595)
Q Consensus 158 l~l~l~~~R~i~~~~~~~~~g~W-~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~g~ 235 (595)
+++||++.|+++.+++.+++|.| .+....+.+++|+||||||+|+||+.+|+++++|||+|++|||+..... +...++
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 58999999999999999999999 3345678899999999999999999999999999999999999986544 566777
Q ss_pred cccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCC
Q 046427 236 GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPA 315 (595)
Q Consensus 236 ~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~ 315 (595)
...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+++||+||||+.||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCcEEEcCCCC
Q 046427 316 KDSKLVLHENVTVTPHLG 333 (595)
Q Consensus 316 ~~~~L~~~~nvilTPHi~ 333 (595)
.++|||++||+++|||+|
T Consensus 161 ~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTHHHHTSTTEEEESS-T
T ss_pred CCChHHcCCCEEEeCccC
Confidence 999999999999999986
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=321.63 Aligned_cols=188 Identities=16% Similarity=0.195 Sum_probs=171.3
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhCCceEEE
Q 046427 378 APFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTE 457 (595)
Q Consensus 378 ~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI~v~f 457 (595)
+.|-.+|+|||++++||+++ .+++|+++|+|+++ .++++|++++|+++|||++..+ ++|++||+.+|+|+||++.|
T Consensus 19 ssht~laerlG~l~~ql~~~--~~~~I~i~~~Gsla-~t~~~~~~~~A~l~GlL~~~~~-~vn~vNA~~iAkerGI~v~~ 94 (208)
T TIGR00719 19 SSHTAGAAKIANVARSIFGN--EPEQIEFQFHGSFA-ETFKGHGTDRAIIGGILDFDPD-DDRIKTAFEIAEAAGIDIEF 94 (208)
T ss_pred hhHHHHHHHHHHHHHHHhcC--CCcEEEEEEEeeec-ccCCCchHHHHHHhhhcCCCCC-chHHHHHHhhhhhcCceEEE
Confidence 35899999999999999998 89999999999998 6799999999999999988776 79999999999999999999
Q ss_pred EEeecCC-CCCCCceEEEEEeeeccccccccccCCceEEEEEEE-eCCeeEEEEEcceEEEeecCccEEEEEecCCCCch
Q 046427 458 ERIVLDG-SPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRV-KDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGII 535 (595)
Q Consensus 458 ~~~~~~~-~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSv-gGG~i~I~~Idgf~v~~~~~~~~Liv~~~D~pG~I 535 (595)
.+.+... .|||+..+...+. ++.++++.|++ +||.+||++||||+||+.|++|+|++.|.|+||+|
T Consensus 95 ~~~~~~~~~~~n~v~i~v~~~------------~g~~~~v~Gts~ggg~~riv~idg~~vd~~~~g~~L~~~~~D~PG~I 162 (208)
T TIGR00719 95 RTEDAGDNVHPNSAKITFSDE------------KGEEEELIGISIGGGAIEITEINGFAIEFRGEHPAILLEHNDKFGTI 162 (208)
T ss_pred EECCCCCCCCCCeEEEEEEcC------------CCCEEEEEEEEeCCCeEEEEEECCEEEEecCCccEEEEEeCCCCChH
Confidence 8877666 7898877655331 23448899955 56899999999999999999999999999999999
Q ss_pred hHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHH
Q 046427 536 GKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKI 581 (595)
Q Consensus 536 ~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L 581 (595)
++|+++|++++|||++|+++|..++++|+|+|++|+++|+++|++|
T Consensus 163 g~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~i 208 (208)
T TIGR00719 163 AGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDAI 208 (208)
T ss_pred HHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhhC
Confidence 9999999999999999999999999999999999999999999975
|
This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases. |
| >KOG0067 consensus Transcription factor CtBP [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=270.99 Aligned_cols=291 Identities=31% Similarity=0.435 Sum_probs=249.5
Q ss_pred HhhcCCcEEecCCCCHhHHhhhc-CCce-EEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCC
Q 046427 69 VLKNFANVDCSYNLSPEELCTKI-SLCD-ALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAP 146 (595)
Q Consensus 69 ~l~~~~~v~~~~~~~~~el~~~i-~~~d-~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p 146 (595)
+|+....+-++...+-.|+.+++ ..+- ++.+. ...++++.+++.+ -||++.+.|.|+||+|+.+|.+.||.|+|.|
T Consensus 48 ilk~~atvafcdaqstqeIhekvLneavgam~yh-~i~l~reDlEkfk-alRv~~rig~g~dn~dikaAseL~iavC~ip 125 (435)
T KOG0067|consen 48 ILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYH-TITLPREDLEKFK-ALRVIVRIGSGYDNIDIKAASELGIAVCNIP 125 (435)
T ss_pred hhhcchheeeecccchHHHHHHHHHHhhhcceee-ecccchhhHHHhh-hhceeeeeccccchhhhhhhhhheeeeeccc
Confidence 35555566666666666776643 3332 33333 3468999999985 6999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc-------cceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEE
Q 046427 147 TANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK-------YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVI 219 (595)
Q Consensus 147 ~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~-------~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~ 219 (595)
+...+.+|+-++.++|.++|+-....+.+++|.|.... .-....+|.++|++|+|++|+.++.++++||+.|+
T Consensus 126 ~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~i 205 (435)
T KOG0067|consen 126 SDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVI 205 (435)
T ss_pred chhHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceee
Confidence 99999999999999999999999999999999996532 12346899999999999999999999999999999
Q ss_pred EECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 220 AHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 220 ~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.|||+......+.+|.+.+ ++.+++-++|.+++||-+.+.+.++|+.-.+.+|+.|++++|++||+++|+.+|.++|++
T Consensus 206 fydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~ 285 (435)
T KOG0067|consen 206 FYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKS 285 (435)
T ss_pred eecchhhhhhhhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhcc
Confidence 9999986666677888765 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCC-CCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC---CccccCCC
Q 046427 299 GIISQAALDVFTEEPP-AKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELA---ATAVNAPM 368 (595)
Q Consensus 299 g~i~ga~lDv~~~EP~-~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~---~~~vn~~~ 368 (595)
|++.|++ |. -...||.+.||.++|||.+++++.+..++.+.++..+...+.|..+ +++||+..
T Consensus 286 G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnkE~ 352 (435)
T KOG0067|consen 286 GRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNKEF 352 (435)
T ss_pred Cceeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhhhh
Confidence 9999887 11 1345788899999999999999999999999999999999988754 45666543
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-24 Score=227.71 Aligned_cols=331 Identities=19% Similarity=0.174 Sum_probs=232.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc--CCc---ccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARAT--GVG---LVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--g~~---~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
++|+|||+|.||+++|+.++..|++|.+|++.... ...... ++. ..++++++++||+|++|+|. ..+..++..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~~ 79 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLAE 79 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHHH
Confidence 47999999999999999999999888887765532 222233 321 13678899999999999996 456766643
Q ss_pred HHHh-cCCCceEEEeccCCchhcHHHHHHHHhcC-CeeE----EEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHH
Q 046427 267 EAFF-KMKKGVRIVNVARGGVVDEEALVRALDSG-IISQ----AALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQ 340 (595)
Q Consensus 267 ~~l~-~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~g----a~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~ 340 (595)
... .++++++++|++..+.-..+++.+.+..+ ++.+ ++....+.+ .+...||.+..+++||+-...
T Consensus 80 -l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~--aa~~~lf~g~~~il~~~~~~~----- 151 (359)
T PRK06545 80 -LADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVA--AARADLFENAPWVLTPDDHTD----- 151 (359)
T ss_pred -HhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHH--HhcHHHHCCCcEEEecCCCCC-----
Confidence 223 47899999999987764445544443222 2211 111111111 234578999999999975433
Q ss_pred HHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHH---HHHHH---HHHHHHhcCCCCceEEEEEEeecC
Q 046427 341 EGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTL---AEKLG---GLAVQLVAGGSGVKSVKVSYASAR 412 (595)
Q Consensus 341 ~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~l---a~rlG---~l~~qL~~g~~~~k~v~i~~~Gs~ 412 (595)
.+..+.+.++++.-+.......+..|+..+..++ ||+.. +..++ ..+.+|+++ +|+++++...+++
T Consensus 152 ----~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al~~~~~~~~~~~~~la~~--gfrd~tRia~~~p 225 (359)
T PRK06545 152 ----PDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSLAARLAGEHPLALRLAAG--GFRDITRIASSDP 225 (359)
T ss_pred ----HHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHHHHhhccCchHHHhhhcc--cccCCccccCCCH
Confidence 2233456666666666666667888898888888 87644 33333 235678888 8999999999999
Q ss_pred CCCCcccccchHHHHHhhcccccccccccccHHHHHhhCCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCc
Q 046427 413 GPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIG 492 (595)
Q Consensus 413 a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~ 492 (595)
. +|.+....++..+...|+.+..+...++++++--++..+.-.|.... .++.-+.... .|
T Consensus 226 ~-~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~------~~r~~~~~~~----------~~--- 285 (359)
T PRK06545 226 G-MWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGK------AGRDRLPGKH----------GG--- 285 (359)
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHhCcccc----------CC---
Confidence 8 99999999999888889888876677777776544444444343321 1211111110 01
Q ss_pred eEEEEEEEeCCeeEEEEEcceEEEeecCccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC
Q 046427 493 DIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572 (595)
Q Consensus 493 ~~~v~GSvgGG~i~I~~Idgf~v~~~~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~ 572 (595)
..++++.|++..+|+||.|+.|.++|++++|||.++++.+.+++..++..+.++..
T Consensus 286 ------------------------~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~~ 341 (359)
T PRK06545 286 ------------------------AIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKNE 341 (359)
T ss_pred ------------------------CCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCCH
Confidence 45788999999999999999999999999999999999988888889999999987
Q ss_pred CcHHHHHHHh
Q 046427 573 PSREVLKKIG 582 (595)
Q Consensus 573 ~~~e~l~~L~ 582 (595)
-+.+...++.
T Consensus 342 ~~~~~~~~~~ 351 (359)
T PRK06545 342 EDRERAKALL 351 (359)
T ss_pred HHHHHHHHHH
Confidence 7665554443
|
|
| >PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=180.01 Aligned_cols=101 Identities=40% Similarity=0.572 Sum_probs=91.1
Q ss_pred EEEecCCChhHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhH
Q 046427 56 VLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAA 135 (595)
Q Consensus 56 il~~~~~~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa 135 (595)
||+++++++..+++|++..++.+....+.+++.+.++++|++++++.+++++++++.+ |+||||++.|+|+||||+++|
T Consensus 1 ili~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a 79 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEEGFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAA 79 (133)
T ss_dssp EEESSS-SHHHHHHHHHTSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHHH
T ss_pred eEEeccCCHHHHHHHHCCceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcccHHHH
Confidence 7899999999999999833888877888999999999999999988777999999998 699999999999999999999
Q ss_pred HhCCceEEeCCCCCchHHHHHH
Q 046427 136 TEHGCLVVNAPTANTIAAAEHG 157 (595)
Q Consensus 136 ~~~gI~V~n~p~~~~~~vAE~~ 157 (595)
+++||.|+|+||+++.+||||+
T Consensus 80 ~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 80 KERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHTTSEEEE-TTTTHHHHHHHH
T ss_pred hhCeEEEEEeCCcCCcchhccc
Confidence 9999999999999999999999
|
The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A .... |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-21 Score=206.13 Aligned_cols=169 Identities=21% Similarity=0.304 Sum_probs=141.0
Q ss_pred EccccccccC-hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC
Q 046427 122 RAGVGIDNVD-LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF 200 (595)
Q Consensus 122 ~~g~G~d~iD-~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl 200 (595)
-.++|+...- ++.....||+|+|+|++++.+++|+++++++++. +..+|.+ +.++.||+++|+|+
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~--------~~~LaGKtVgVIG~ 262 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT--------DVMIAGKTVVVCGY 262 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc--------CCCcCCCEEEEECC
Confidence 3578887642 2333446899999999999999999999999988 3344443 34799999999999
Q ss_pred ChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEE
Q 046427 201 GKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 201 G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili 279 (595)
|.||+.+|+++++|||+|+++++++.. ..+...|++.+++++++++||+|++|+ .+.++|+++.|+.||+|++|+
T Consensus 263 G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 263 GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIVG 338 (476)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEEE
Confidence 999999999999999999999766532 234556888789999999999999985 478999999999999999999
Q ss_pred eccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCC
Q 046427 280 NVARGGVVDEEALVRALDSGIISQAALDVFTEEPPA 315 (595)
Q Consensus 280 N~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~ 315 (595)
|+||+ |++.+.++|+.+. ++|+++.||..
T Consensus 339 NvGr~---d~Ei~i~aL~~~~----~vdv~evep~v 367 (476)
T PTZ00075 339 NIGHF---DNEIQVAELEAYP----GIEIVEIKPQV 367 (476)
T ss_pred EcCCC---chHHhHHHHHhcC----CceeecccCCC
Confidence 99999 7788888887653 78999999864
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-21 Score=203.43 Aligned_cols=314 Identities=14% Similarity=0.128 Sum_probs=211.4
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhc-CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHH
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKG-LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~-~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
.-.||+|||+ |.||+++|+.++. +|.+|++||+... ...++++.+++||+|++|+|. ..+..++.+-.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv-~~~~~~l~~l~ 72 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPI-RHTAALIEEYV 72 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCH-HHHHHHHHHHh
Confidence 4569999999 9999999999995 6999999998410 123578889999999999995 44666664321
Q ss_pred -H-hcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCC--CCcccccCCcEEEcCCCCCCcHHHHHHHH
Q 046427 269 -F-FKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPA--KDSKLVLHENVTVTPHLGASTTEAQEGVA 344 (595)
Q Consensus 269 -l-~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~--~~~~L~~~~nvilTPHi~~~t~ea~~~~~ 344 (595)
+ ..+|++++|+|++.-+---.+++... ..++ -+.-|.. ..+.+|++.++++||. ...+.
T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~~~~--~~~f-------VG~HPMaG~E~s~lf~g~~~iltp~---~~~~~----- 135 (370)
T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAMLAS--QAEV-------VGLHPMTAPPKSPTLKGRVMVVCEA---RLQHW----- 135 (370)
T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHHHhc--CCCE-------EeeCCCCCCCCCcccCCCeEEEeCC---CchhH-----
Confidence 1 24799999999998774333333221 1122 2223432 1246899999999996 11111
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--ch---hHHHHHHH-------HHHH--HHhcCCCCce----EEEE
Q 046427 345 IEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PF---VTLAEKLG-------GLAV--QLVAGGSGVK----SVKV 406 (595)
Q Consensus 345 ~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~---~~la~rlG-------~l~~--qL~~g~~~~k----~v~i 406 (595)
.+.+.++++..+.+.....|..|+..+..++ || +.++..+. .+.. .+.++ +|+ .+++
T Consensus 136 ---~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~~~~~~~~~~~~~~~f~~~--gFr~d~t~iTR 210 (370)
T PRK08818 136 ---SPWVQSLCSALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLRDYAPLLGELRALMPYRSA--SFELDTAVIAR 210 (370)
T ss_pred ---HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccch--hhHHHhhhcch
Confidence 2346666666677888889999999999998 55 44443331 1111 33444 677 6679
Q ss_pred EEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhCCceEE---EEEeec----CCCC--CCCceEEEEEe
Q 046427 407 SYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVT---EERIVL----DGSP--ENPLEFIQVQI 477 (595)
Q Consensus 407 ~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI~v~---f~~~~~----~~~h--pnt~~~~~~~~ 477 (595)
.+++++. +|.+++..|+ .+.-.|+.+.++...+.++.+--++.+|.-. |..... .+.- .||.. ..
T Consensus 211 IAss~P~-mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~~~~~r~~~~~~~~~~----~~ 284 (370)
T PRK08818 211 ILSLNPS-IYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANAQALQEDALAAGNYTY----ER 284 (370)
T ss_pred hhcCCHH-HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchhhCCcccccc----cc
Confidence 9999998 9999999999 6666677766655566666543343333322 222211 0000 13310 00
Q ss_pred eeccccccccccCCceEEEEEEEeCCeeEEEEEcceEEEeec----CccEEEEEec-CCCCchhHHHhhhhcCCccccce
Q 046427 478 ANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSL----EGSIILCRQV-DQPGIIGKVGSLLGDNNVNVNFM 552 (595)
Q Consensus 478 ~~~~~~~g~sig~~~~~~v~GSvgGG~i~I~~Idgf~v~~~~----~~~~Liv~~~-D~pG~I~~I~~~L~~~~INIa~m 552 (595)
.| ..+ +.+.|++.-+ |+||.|++|.++|++++|||.++
T Consensus 285 ----------~g---------------------------~~~~~~~~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~I 327 (370)
T PRK08818 285 ----------VG---------------------------YLLADLTEPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSI 327 (370)
T ss_pred ----------cc---------------------------cccCCCCcceEEEEECCCCCCChHHHHHHHHHHcCcccceE
Confidence 01 344 6788888885 99999999999999999999999
Q ss_pred EeeeecCCCcEEEEEEcCCCCcHHHHHH
Q 046427 553 SVGRIAPQKQAVMTIGVDEEPSREVLKK 580 (595)
Q Consensus 553 ~v~r~~~g~~al~vi~~d~~~~~e~l~~ 580 (595)
+..+.+.++.. ..|++...-+...+.+
T Consensus 328 es~~~r~~~y~-f~i~~~~~~~~~~~~~ 354 (370)
T PRK08818 328 HSSRTPAGELH-FRIGFEPGSDRAALAR 354 (370)
T ss_pred EEecccCceEE-EEEEEeccccHHHHHH
Confidence 99888887766 7788888666655544
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-19 Score=182.15 Aligned_cols=164 Identities=24% Similarity=0.365 Sum_probs=134.6
Q ss_pred cCCceEEEEcC----------------CCCCCHHHHhccCCCceEEEEccccccccChh-hHHhCCceEE------eCCC
Q 046427 91 ISLCDALIVRS----------------GTKVTREVFESSAGRLKVVGRAGVGIDNVDLS-AATEHGCLVV------NAPT 147 (595)
Q Consensus 91 i~~~d~li~~~----------------~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~-aa~~~gI~V~------n~p~ 147 (595)
+.++|++|.-- ...+++++++.++ .++...+|+++.|++ +|+++||.|+ |++.
T Consensus 52 ~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~----~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~ 127 (287)
T TIGR02853 52 LTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK----GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI 127 (287)
T ss_pred hccCCEEEECCccccCCceEecccccCCccccHHHHHhcC----CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence 67788877521 1236788888763 477789999999998 9999999999 9999
Q ss_pred CCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-
Q 046427 148 ANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ- 226 (595)
Q Consensus 148 ~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~- 226 (595)
+|+.++||+++++++.. .+.+++|++++|+|+|.||+.+|++|+++|++|+++|++..
T Consensus 128 ~n~~~~Ae~ai~~al~~---------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~ 186 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEH---------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSAD 186 (287)
T ss_pred EccHhHHHHHHHHHHHh---------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 99999999999877732 23478999999999999999999999999999999998763
Q ss_pred HHHHHHcCCccc---CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCC
Q 046427 227 ADRARATGVGLV---SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 227 ~~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
...+.+.|.... +++++++++|+|++|+|.+ +++++.++.||+++++||++..
T Consensus 187 ~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 187 LARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred HHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcC
Confidence 233444565433 5778899999999999963 6788899999999999999963
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-15 Score=156.65 Aligned_cols=242 Identities=11% Similarity=0.067 Sum_probs=163.4
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCc--ccCHHHhccccCEEEEeCCCChhccccccHHHHh
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVG--LVSFEEAISTADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~--~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
+|||||+|.||+++|+.++..|++|.+||++. ..+.+.+.|.. ..+..+.+++||+|++|+|.. ....++ ++...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~-~~l~~ 79 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPS-EQLIP 79 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHHHH
Confidence 79999999999999999999999999999876 33445555642 222235789999999999943 344444 44556
Q ss_pred cCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe-cCCCCCC---CCCcccccCCcEEEcCCCCCCcHHHHHHHHHH
Q 046427 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD-VFTEEPP---AKDSKLVLHENVTVTPHLGASTTEAQEGVAIE 346 (595)
Q Consensus 271 ~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD-v~~~EP~---~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~ 346 (595)
.++++++++|++..+.-..+++.+.. . ++ .+.. .++.|.. .+..-||...++++||+-... .+
T Consensus 80 ~l~~~~ii~d~~Svk~~~~~~~~~~~-~-~~--v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~-~~-------- 146 (279)
T PRK07417 80 ALPPEAIVTDVGSVKAPIVEAWEKLH-P-RF--VGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTD-LN-------- 146 (279)
T ss_pred hCCCCcEEEeCcchHHHHHHHHHHhh-C-Cc--eeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCC-HH--------
Confidence 68999999999876643333332221 1 22 2222 1222211 122347888999999975432 22
Q ss_pred HHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHHH-----------HHHhcCCCCceEEEEEEeecCC
Q 046427 347 IAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGLA-----------VQLVAGGSGVKSVKVSYASARG 413 (595)
Q Consensus 347 ~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l~-----------~qL~~g~~~~k~v~i~~~Gs~a 413 (595)
..+.+..+++.-+.......|..|+..+..++ |++.....+..+. ..++++ +|+++++.+.+++.
T Consensus 147 ~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~~--gfrd~tRia~~~p~ 224 (279)
T PRK07417 147 ALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLASS--GFADTSRVGGGNPE 224 (279)
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhccC--cccccccccCCChH
Confidence 23345555555555555667888888888887 7776655544442 246666 89999999999998
Q ss_pred CCCcccccchHHHHHhhcccccccccccccHHHHHhhCCc
Q 046427 414 PDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGL 453 (595)
Q Consensus 414 ~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI 453 (595)
+|.++...|+.-+...|+.+..+...++++++--++.++
T Consensus 225 -~w~~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l 263 (279)
T PRK07417 225 -LGVMMAEYNRAALLRSLASYRQSLDQLEELIEQENWSAL 263 (279)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999987767787777766677776654444333
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-15 Score=159.56 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=106.8
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
..+.||+++|+|+|.||+.+|+++++||++|+++++++. ...+...|+..++++++++.+|+|+.+. .++++++.
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tT----Gt~~vI~~ 325 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTT----GNKDIIMV 325 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECC----CCccchHH
Confidence 458999999999999999999999999999999988763 3456677887778999999999999843 57899999
Q ss_pred HHHhcCCCceEEEeccC-CchhcHHHHHHH--HhcCCeeEEEEecCCCC
Q 046427 267 EAFFKMKKGVRIVNVAR-GGVVDEEALVRA--LDSGIISQAALDVFTEE 312 (595)
Q Consensus 267 ~~l~~mk~gailiN~ar-g~~vd~~aL~~a--L~~g~i~ga~lDv~~~E 312 (595)
+.|+.||+|++|+|+|| +..||+++|.++ ++.+.+. +++|+|+.|
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 99999999999999999 678999999998 8999885 999999986
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-14 Score=146.94 Aligned_cols=166 Identities=23% Similarity=0.343 Sum_probs=131.9
Q ss_pred hhcCCceEEEEcCC----------------CCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCC----
Q 046427 89 TKISLCDALIVRSG----------------TKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTA---- 148 (595)
Q Consensus 89 ~~i~~~d~li~~~~----------------~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~---- 148 (595)
+.+.++|+++.-.. ..++++.++.++ ++..+. .|.+.+++| +.|.++||.|.+.+..
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~ 127 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP-EHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA 127 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcC-CCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence 35788999885311 124688999885 676444 599999988 8899999999998864
Q ss_pred --CchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-
Q 046427 149 --NTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA- 225 (595)
Q Consensus 149 --~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~- 225 (595)
|+.++||.++.+.+. + .+.++.|++++|+|+|.+|+.+++.|+++|++|.++|++.
T Consensus 128 ~~ns~~~aegav~~a~~--~-------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 128 ILNSIPTAEGAIMMAIE--H-------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred hhccHhHHHHHHHHHHH--h-------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 888999997765431 0 1246789999999999999999999999999999999986
Q ss_pred cHHHHHHcCCccc---CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccC
Q 046427 226 QADRARATGVGLV---SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 226 ~~~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
..+.+.+.|+..+ ++.+.++++|+|+.++|. .+++++.++.|++++++||++.
T Consensus 187 ~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 187 HLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 3445566777644 467889999999999983 4678889999999999999994
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.7e-15 Score=153.24 Aligned_cols=238 Identities=13% Similarity=0.094 Sum_probs=163.5
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-cCHHHhc-cccCEEEEeCCCChhccccccHH
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAI-STADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~ell-~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
-++++|||||+|.||+++|+.++.+|++|++||+....+.+.+.|+.. .++++++ .++|+|++|+|. ..+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHhh
Confidence 356799999999999999999999999999999876444555667654 3677876 479999999995 4677777554
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCCCCCCCCCcccccCCcEEEcCCC---CCCcHHHHHHH
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFTEEPPAKDSKLVLHENVTVTPHL---GASTTEAQEGV 343 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi---~~~t~ea~~~~ 343 (595)
....++++++|+|++.++-...+++.+.+..+ ++.+. -=.++.| .....+...+++++|+. .....+
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~-HPmaG~e---~~~~~~~~~~~~~~~~~i~~~~~~~~----- 183 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCT-HPMFGPE---SGKGGWAGLPFVYDKVRIGDEGEREA----- 183 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEec-CCCCCCC---CCccccCCCeEEEecceecCCCCCHH-----
Confidence 35568999999999998776777777777554 23221 0011112 11234455556666643 122222
Q ss_pred HHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHHH---HHHhcCCCCceEEEEEEe----ecCCC
Q 046427 344 AIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGLA---VQLVAGGSGVKSVKVSYA----SARGP 414 (595)
Q Consensus 344 ~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l~---~qL~~g~~~~k~v~i~~~----Gs~a~ 414 (595)
..+.+.++++..+.+.....|..|+..++.++ ||+. |..|.... ..++++ +|++.+.... +++.
T Consensus 184 ---~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~l-a~~L~~~~~~~~~~~~~--gfrd~tria~r~~~~~p~- 256 (304)
T PLN02256 184 ---RCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTV-GRILGKMELESTPINTK--GYETLLRLVENTSSDSFD- 256 (304)
T ss_pred ---HHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHH-HHHHHHcCCcccccccc--cHHHHHHHHHhhcCCCHH-
Confidence 33456667766667888889999999999888 8864 33333322 245566 7888777765 8898
Q ss_pred CCcccccchHHHHHhhcccccccccccccHH
Q 046427 415 DDLDTRLLRAMITKGIIEPISSVFVNLVNAD 445 (595)
Q Consensus 415 ~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~ 445 (595)
+|.+++..|+..+ ..++.+...-..+++++
T Consensus 257 lw~dI~~~N~~~~-~~i~~~~~~l~~~~~~l 286 (304)
T PLN02256 257 LYYGLFMYNPNAT-EELERLELAFDSVKKQL 286 (304)
T ss_pred HHHHHHHHChHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999998877 66766655444444443
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-14 Score=147.69 Aligned_cols=225 Identities=23% Similarity=0.264 Sum_probs=164.4
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEE--EEECCCC-cHHHHHHcCCcc---cC-HHHhccccCEEEEeCCCChhccccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNV--IAHDPYA-QADRARATGVGL---VS-FEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V--~~~d~~~-~~~~a~~~g~~~---~~-l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
-++|+|+|+|.||+++|+.++..|+.| +++|++. ....+.++|+.. .+ ..+.+..||+|++++|- ..|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 368999999999999999999988866 5566654 344555677632 23 36788889999999995 4577777
Q ss_pred cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEe-cCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHH
Q 046427 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALD-VFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEG 342 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lD-v~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~ 342 (595)
.+ ....+|+|++|+|++.-+--..+++.+.+.++ ++ .+.. -|++| +..+|+++..||+||.-...
T Consensus 82 ~~-l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~--vg~HPM~G~~---~~~~lf~~~~~vltp~~~~~------- 148 (279)
T COG0287 82 KE-LAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRF--VGGHPMFGPE---ADAGLFENAVVVLTPSEGTE------- 148 (279)
T ss_pred HH-hcccCCCCCEEEecccccHHHHHHHHHhccCCCee--EecCCCCCCc---ccccccCCCEEEEcCCCCCC-------
Confidence 44 33379999999999987776666666665443 23 2222 13332 46789999999999963322
Q ss_pred HHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHH---H------HHHHHhcCCCCceEEEEEEeec
Q 046427 343 VAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLG---G------LAVQLVAGGSGVKSVKVSYASA 411 (595)
Q Consensus 343 ~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG---~------l~~qL~~g~~~~k~v~i~~~Gs 411 (595)
.+..+.+.+++.+.+.+.....|..|+..+..++ ||+......+ . ++..++++ .|+++++.+.++
T Consensus 149 --~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~--~frd~tRia~~~ 224 (279)
T COG0287 149 --KEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASG--GFRDITRIASSD 224 (279)
T ss_pred --HHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhcccc--chhhHHHHHcCC
Confidence 3456788999998888889999999999999999 8775433333 2 23556677 899999999999
Q ss_pred CCCCCcccccchHHHHHhhccccc
Q 046427 412 RGPDDLDTRLLRAMITKGIIEPIS 435 (595)
Q Consensus 412 ~a~~~~~~~~~~~a~l~GlL~~~~ 435 (595)
+. +|.+.+..+...+...++.+.
T Consensus 225 P~-m~~dI~~~N~~~~l~~i~~~~ 247 (279)
T COG0287 225 PE-MYADIQLSNKEALLEAIERFA 247 (279)
T ss_pred hH-HHHHHHHhCcHHHHHHHHHHH
Confidence 98 999999999985444444433
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-14 Score=149.64 Aligned_cols=247 Identities=21% Similarity=0.226 Sum_probs=165.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCC-cHHHHHHcCCc---ccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYA-QADRARATGVG---LVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~~~~a~~~g~~---~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
.++|+|||+|.||+.+|+.++..|. +|++||++. ..+.+.+.|+. ..++++.+++||+|++|+|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4689999999999999999998874 899999976 34455566642 236788899999999999953 344443
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEE-ecCCCC---CCCCCcccccCCcEEEcCCCCCCcHHHHH
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAAL-DVFTEE---PPAKDSKLVLHENVTVTPHLGASTTEAQE 341 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~l-Dv~~~E---P~~~~~~L~~~~nvilTPHi~~~t~ea~~ 341 (595)
.+....++++.++++++..+.-..+++.+.+..+ +...+. =+++.| |-.....|+...++++||+-++. .++
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~-~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~-~~~-- 159 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEG-VHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTD-PAA-- 159 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCC-CeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCC-HHH--
Confidence 3344568999999999876543344444444333 111221 122222 11234578888999999975443 332
Q ss_pred HHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHH----------HHHHhcCCCCceEEEEEEe
Q 046427 342 GVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGL----------AVQLVAGGSGVKSVKVSYA 409 (595)
Q Consensus 342 ~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l----------~~qL~~g~~~~k~v~i~~~ 409 (595)
.+.+.++++.-+....+..+..|+..+..++ ||+.....++.. ...+.++ +|++.++...
T Consensus 160 ------~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~~~~~~~~~~~~~~~~--gfrd~tRia~ 231 (307)
T PRK07502 160 ------VARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSAS--GFRDFTRIAA 231 (307)
T ss_pred ------HHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhhhcccchHHHHHhccc--cccccccccc
Confidence 2345556655555666777888898888888 777544443322 2246666 8999999999
Q ss_pred ecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhCCc
Q 046427 410 SARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGL 453 (595)
Q Consensus 410 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI 453 (595)
+++. +|.+....|+..+.-.|+.+..+...++++++--++..+
T Consensus 232 ~~~~-~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l 274 (307)
T PRK07502 232 SDPT-MWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDAL 274 (307)
T ss_pred CChH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998 999999999977666666666555555555544443333
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.8e-14 Score=149.62 Aligned_cols=121 Identities=26% Similarity=0.383 Sum_probs=105.9
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+..+.|++++|+|+|.||+.+|++++++|++|+++|.++ ....+...|+...+++++++.+|+|+.++. +.++++
T Consensus 190 ~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG----~~~vI~ 265 (406)
T TIGR00936 190 NLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATG----NKDVIR 265 (406)
T ss_pred CCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCC----CHHHHH
Confidence 345899999999999999999999999999999997665 334456678877788999999999988654 688899
Q ss_pred HHHHhcCCCceEEEeccCCch-hcHHHHHHHHhcCCeeEEEEecCCC
Q 046427 266 DEAFFKMKKGVRIVNVARGGV-VDEEALVRALDSGIISQAALDVFTE 311 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~-vd~~aL~~aL~~g~i~ga~lDv~~~ 311 (595)
.+.|..||+|++|+|+||+.+ +|.++|.+++.+.+..+..+|+|.-
T Consensus 266 ~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 266 GEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 999999999999999999998 9999999998887777899999884
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-17 Score=161.06 Aligned_cols=197 Identities=18% Similarity=0.126 Sum_probs=174.8
Q ss_pred cchhHHHHHHHHHHHHHhcCCCC---ceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhCCce
Q 046427 378 APFVTLAEKLGGLAVQLVAGGSG---VKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLR 454 (595)
Q Consensus 378 ~p~~~la~rlG~l~~qL~~g~~~---~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI~ 454 (595)
+.+..-+.|+|+.+++|++. . ++.+.+.++++++ .+++++.++.|...|.+ ++.+.+.++.+.+.++.++||.
T Consensus 51 s~~~aGa~rigr~A~~l~~~--~~~~~~~v~~~a~a~~e-ena~Gg~~~~Apt~Ga~-G~~P~vl~~~~~~~~a~~~~i~ 126 (262)
T COG1760 51 SSHTAGALRIGRRARALFGE--LKNVPDWVNIYAYASFE-ENAAGGGTVTAPTAGAL-GIIPAVLRIKESFEIAAEKGIK 126 (262)
T ss_pred cccCcccceechhHHHHHHH--HhhhhHHHHHHHHHhhH-hhccCCcEeeeccCccc-cCCcchHHHHHHhhhhhhhhhH
Confidence 45677788999999999987 6 8899999999998 99999999999999999 6666799999999999999999
Q ss_pred EEEEEeec-CCCCCCCceEEEEEeeeccccccccccCCceEEEEE-EEeCCeeEEEEEcceEEEeecCccEEEEEecCCC
Q 046427 455 VTEERIVL-DGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQP 532 (595)
Q Consensus 455 v~f~~~~~-~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~G-SvgGG~i~I~~Idgf~v~~~~~~~~Liv~~~D~p 532 (595)
..|..... +..|||++.+..-+ ++.....| |.++|.+.+++++|+.+++.+..+.+.+.|. +
T Consensus 127 ~fl~~a~aig~~~~nnAsIsgae--------------~gcq~evGsa~~maaa~l~el~Ggs~~q~~~a~~i~~~h~--l 190 (262)
T COG1760 127 IFLLTAGAIGALHPNNASISGAE--------------GGCQGEVGSAIGMGAAALTELNGGSPEQSGNAPEIAMEHN--L 190 (262)
T ss_pred hhhhhcccccccccCcceEEecc--------------CceEEEeehhhhhHHHHHHHHhCCChHHhccccHHHHhcC--C
Confidence 88866544 46899999885433 34455556 5568999999999999999999999999998 9
Q ss_pred CchhH-HHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEEe
Q 046427 533 GIIGK-VGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLK 594 (595)
Q Consensus 533 G~I~~-I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i~ 594 (595)
|++.. |+.++....||++.|...|...+.++.|+++.|..+.+++++.+++++...+++|.+
T Consensus 191 GltcdpVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~tM~~~g~~m~~~y~e 253 (262)
T COG1760 191 GLTCDPVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIETMYETGKDMNVKYRE 253 (262)
T ss_pred CceehhhhchhhhhhhhHHHHHHHHHhhhhhhhheecCCCCChHHHHHHHHHhhhhcchhhee
Confidence 99999 999999999999999999999999999999999999999999999999998888764
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.8e-14 Score=144.43 Aligned_cols=93 Identities=25% Similarity=0.406 Sum_probs=82.3
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
..|+||||||||+|.||+++|++|++|||+|++||+.. +.+.+...|++..++++++++||+|++|+|+ ++++++++.
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~ 90 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA 90 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence 46999999999999999999999999999999997543 3445666788777999999999999999997 678999999
Q ss_pred HHHhcCCCceEEEec
Q 046427 267 EAFFKMKKGVRIVNV 281 (595)
Q Consensus 267 ~~l~~mk~gailiN~ 281 (595)
+.+..||+|++|+-.
T Consensus 91 eil~~MK~GaiL~f~ 105 (335)
T PRK13403 91 EVEENLREGQMLLFS 105 (335)
T ss_pred HHHhcCCCCCEEEEC
Confidence 999999999988764
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.6e-14 Score=143.51 Aligned_cols=233 Identities=16% Similarity=0.133 Sum_probs=150.4
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCc-HHHHHHcCCc--ccCHHHhccccCEEEEeCCCChhccccccHHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQ-ADRARATGVG--LVSFEEAISTADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~-~~~a~~~g~~--~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
+|+|||+|.||+++|+.++..|. +|++||++.. .+.+.+.|+. ..+++++. +||+|++|+|.. .+..++. +.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~~-~l 78 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEILP-KL 78 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHHH-HH
Confidence 79999999999999999997774 8999998763 3445566653 33677765 499999999954 4555553 34
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEE----EEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHH
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQA----ALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVA 344 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga----~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~ 344 (595)
.. ++++++|++++.-+.--.+.+.+. ..+++.++ |...++ |..+...|++...++++|.-+. +.+.
T Consensus 79 ~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~G--p~~a~~~l~~g~~~il~~~~~~-~~~~----- 148 (275)
T PRK08507 79 LD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSG--PKAAIKGLYEGKVVVLCDVEKS-GEKH----- 148 (275)
T ss_pred hc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhh--HHhccHHHhCCCeEEEecCCCC-CHHH-----
Confidence 45 889999999876432222222222 11222221 111111 2123335777778889985432 2222
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHHH---------HHHhcCCCCceEEEEEEeecCC
Q 046427 345 IEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGLA---------VQLVAGGSGVKSVKVSYASARG 413 (595)
Q Consensus 345 ~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l~---------~qL~~g~~~~k~v~i~~~Gs~a 413 (595)
.+.+..+++.-+.+.....|..|++.+..++ ||+ ++..++..+ ..+.++ +|++.++...+++.
T Consensus 149 ---~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~-~a~~l~~~~~~~~~~~~~~~~~~~--gfrd~tria~~~p~ 222 (275)
T PRK08507 149 ---QERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHI-ISFALANTVLKEEDERNIFDLAGG--GFRSMSRLAKSSPA 222 (275)
T ss_pred ---HHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCChHHHHhhccc--chhhhhhcccCCHH
Confidence 2345555555455566667888898888888 884 333333322 355666 89999999999998
Q ss_pred CCCcccccchHHHHHhhcccccccccccccHHH
Q 046427 414 PDDLDTRLLRAMITKGIIEPISSVFVNLVNADF 446 (595)
Q Consensus 414 ~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~ 446 (595)
+|.++...|+..+...|+.+..+...+.++++
T Consensus 223 -l~~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~ 254 (275)
T PRK08507 223 -MWSDIFKQNKENVLEAIDEFIKELEQFKQLIE 254 (275)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997666666666654445554443
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-13 Score=148.31 Aligned_cols=232 Identities=18% Similarity=0.165 Sum_probs=162.6
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHH
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
++|+||| +|.||+++|+.++..|++|.+||++... +.+.+.|+... ++.+.+++||+|++|+|. ..+..++ .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 4799997 9999999999999999999999987632 34556676544 678899999999999995 4566666 345
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCCCCCCC-CCcccccCCcEEEcCCCCCCcHHHHHHHHHH
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFTEEPPA-KDSKLVLHENVTVTPHLGASTTEAQEGVAIE 346 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~-~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~ 346 (595)
...+++++++++++..+....+++.+.+..+ ++ .+ .-|.. +..+++....+++||+-+. +. .
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~--V~-----~HPmaGp~~~~~~g~~~il~p~~~~-~~--------~ 142 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEI--LP-----THPMFGPRTPSLKGQVVILTPTEKR-SN--------P 142 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEE--EE-----cCCCCCCCCcccCCCEEEEecCCCC-CH--------H
Confidence 5678999999999987766667777666543 22 11 12221 1236788899999996532 22 2
Q ss_pred HHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHH---HHHH---H---HHHHHHhcCCCCceEE----EEEEeec
Q 046427 347 IAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTL---AEKL---G---GLAVQLVAGGSGVKSV----KVSYASA 411 (595)
Q Consensus 347 ~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~l---a~rl---G---~l~~qL~~g~~~~k~v----~i~~~Gs 411 (595)
.++.+.++++..+.......|..|+..+..++ ||+.. +..+ | ....+++++ +|++. ++++.++
T Consensus 143 ~~~~v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~--~frd~~~~~tRIa~~~ 220 (437)
T PRK08655 143 WFDKVKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASP--IYELMIDIIGRILGQN 220 (437)
T ss_pred HHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcCh--hhHHHHHHHHHHhcCC
Confidence 33456666666566666677888888888777 77542 2222 2 223456666 79985 8999999
Q ss_pred CCCCCcccccchHHHHHhhcccccccccccccHHH
Q 046427 412 RGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADF 446 (595)
Q Consensus 412 ~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~ 446 (595)
+. +|.+++..|+. +...++.+..+-..+.++.+
T Consensus 221 p~-lw~dI~~~N~~-~~~~l~~~~~~l~~l~~~l~ 253 (437)
T PRK08655 221 PY-LYASIQMNNPQ-IPEIHETFIKECEELSELVK 253 (437)
T ss_pred HH-HHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 98 99999999984 55666666554445544443
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-13 Score=155.32 Aligned_cols=241 Identities=13% Similarity=0.104 Sum_probs=159.3
Q ss_pred ceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhcc-ccCEEEEeCCCChhcccc
Q 046427 186 VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAIS-TADFISLHMPLTPATSKM 263 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~-~aD~V~l~~Plt~~t~~l 263 (595)
.|.++.+++|||||+|+||+.+|+.++.+|++|++||+....+.+.+.|+... ++++++. +||+|++|+| ...+..+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~v 441 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKV 441 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHH
Confidence 46778999999999999999999999999999999998754345566777543 7888876 5999999999 4678888
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCC-eeEEEEecCCCCCC----CCCcccccCCcEEEcCCCCCCcHH
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGI-ISQAALDVFTEEPP----AKDSKLVLHENVTVTPHLGASTTE 338 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~-i~ga~lDv~~~EP~----~~~~~L~~~~nvilTPHi~~~t~e 338 (595)
+.+.....||+|++++|++.++-...+.+.+.+..+. +.+ +-=.++.|-. ....-|++. .++.++ .+
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~-~HPm~G~e~~~~G~~~~~~lf~~-~~v~~~------~~ 513 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILC-THPMFGPESGKNGWNNLAFVFDK-VRIGSD------DR 513 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEe-eCCCCCccccccchhhhhhhccC-cEeCCC------cc
Confidence 8766555799999999999998656666666665542 221 1111222210 011113332 121111 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHHH---HHHhcCCCCceEEE----EEEe
Q 046427 339 AQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGLA---VQLVAGGSGVKSVK----VSYA 409 (595)
Q Consensus 339 a~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l~---~qL~~g~~~~k~v~----i~~~ 409 (595)
. .+.++.+.+++...+.+.....|..|+..++.++ ||+. +..+..+. ..+.++ +++.+. +++.
T Consensus 514 ~-----~~~~~~l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHll-a~~L~~~~~~~~~~~~~--gfr~l~~Li~Ria~ 585 (667)
T PLN02712 514 R-----VSRCDSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTM-GRLLEKLGLESTPINTK--GYETLLNLVENTAG 585 (667)
T ss_pred h-----HHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHH-HHHHHHCCCcccccccH--HHHHHHHHHHhhcC
Confidence 1 2234455666666667778888899998888777 6642 23332111 122234 577766 8899
Q ss_pred ecCCCCCcccccchHHHHHhhcccccccccccccHH
Q 046427 410 SARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNAD 445 (595)
Q Consensus 410 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~ 445 (595)
+++. +|+++...|+.. ...|+.+...-..+++++
T Consensus 586 ~~p~-l~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l 619 (667)
T PLN02712 586 DSFD-LYYGLFMYNVNA-MEQLERLDLAFESLKKQL 619 (667)
T ss_pred CCHH-HHHHHHHHChHH-HHHHHHHHHHHHHHHHHH
Confidence 9998 999999999888 556766655444444444
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-12 Score=137.74 Aligned_cols=154 Identities=21% Similarity=0.298 Sum_probs=117.0
Q ss_pred Ecccccccc-ChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc-ccceeeecCCEEEEEe
Q 046427 122 RAGVGIDNV-DLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN-KYVGVSLVGKTLAVMG 199 (595)
Q Consensus 122 ~~g~G~d~i-D~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIG 199 (595)
-+++|+... ......+.+++|.|++..++.+..|...+.-. +.|+.- ...+..+.|++++|+|
T Consensus 155 eTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~---------------s~~~ai~rat~~~l~Gk~VlViG 219 (425)
T PRK05476 155 ETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGE---------------SLLDGIKRATNVLIAGKVVVVAG 219 (425)
T ss_pred cchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHh---------------hhHHHHHHhccCCCCCCEEEEEC
Confidence 367888775 23334467899999999999886554333222 223210 0113458999999999
Q ss_pred CChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEE
Q 046427 200 FGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRI 278 (595)
Q Consensus 200 lG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gail 278 (595)
+|.||+.+|++++++|++|+++|+.+. ...+...|++..+++++++.+|+|+.++ .+.++|+.+.|..||+|+++
T Consensus 220 ~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~Gail 295 (425)
T PRK05476 220 YGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGAIL 295 (425)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCCEE
Confidence 999999999999999999999998763 3344556877778999999999999876 35778999999999999999
Q ss_pred EeccCCch-hcHHHHHH
Q 046427 279 VNVARGGV-VDEEALVR 294 (595)
Q Consensus 279 iN~arg~~-vd~~aL~~ 294 (595)
+|+|+... +|.++|.+
T Consensus 296 iNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 296 ANIGHFDNEIDVAALEE 312 (425)
T ss_pred EEcCCCCCccChHHHhh
Confidence 99999776 56776654
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-12 Score=119.58 Aligned_cols=114 Identities=20% Similarity=0.298 Sum_probs=88.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccH-HHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFND-EAF 269 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~-~~l 269 (595)
++|||||+|.||+.+|++|...|++|.+||++.. .+...+.|+..+ ++.|++++||+|++|+|..++++.++.. ..+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 5899999999999999999999999999998763 345556677654 8999999999999999987888777632 257
Q ss_pred hcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEec
Q 046427 270 FKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDV 308 (595)
Q Consensus 270 ~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv 308 (595)
..+++|.++||++....-....+.+.+.+..+ ..+|.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~--~~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGV--RYVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE--EEEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccc--eeeee
Confidence 78999999999999999888999999877665 45553
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.7e-12 Score=135.55 Aligned_cols=255 Identities=12% Similarity=0.061 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcHHH
Q 046427 151 IAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQADR 229 (595)
Q Consensus 151 ~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~ 229 (595)
...++..+-.++..+|..... .|-+ ......++|+||| +|.||+++|+.++..|+.|.+||+...
T Consensus 68 ~~~~~~i~~~i~~~s~~~q~~-------~~~~----~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--- 133 (374)
T PRK11199 68 PDLIEDVLRRVMRESYSSEND-------KGFK----TLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--- 133 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhHH-------hccc----ccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc---
Confidence 334455566666666643321 1211 1122458999999 999999999999999999999997421
Q ss_pred HHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe-c
Q 046427 230 ARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD-V 308 (595)
Q Consensus 230 a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD-v 308 (595)
.+.++++++||+|++|+|... +..++.. +..+++|++|++++..+....+++.+.+. +.+ .+.. .
T Consensus 134 --------~~~~~~~~~aDlVilavP~~~-~~~~~~~--l~~l~~~~iv~Dv~SvK~~~~~~~~~~~~-~~f--vg~HPm 199 (374)
T PRK11199 134 --------DRAEDILADAGMVIVSVPIHL-TEEVIAR--LPPLPEDCILVDLTSVKNAPLQAMLAAHS-GPV--LGLHPM 199 (374)
T ss_pred --------hhHHHHHhcCCEEEEeCcHHH-HHHHHHH--HhCCCCCcEEEECCCccHHHHHHHHHhCC-CCE--EeeCCC
Confidence 246788899999999999654 5666632 44489999999998876544555555443 232 2222 2
Q ss_pred CCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHH
Q 046427 309 FTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEK 386 (595)
Q Consensus 309 ~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~r 386 (595)
|+.| ...+....++++|+ ...++ .+.+.++++.-+.......|..|+..+..++ ||+.....
T Consensus 200 ~G~~-----~~~~~~~~vv~~~~---~~~~~--------~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al 263 (374)
T PRK11199 200 FGPD-----VGSLAKQVVVVCDG---RQPEA--------YQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAY 263 (374)
T ss_pred CCCC-----CcccCCCEEEEcCC---CCchH--------HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 12345566778774 22222 2334455554456667778889999988888 66543322
Q ss_pred HHHHH---------HHHhcCCCCceE----EEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhCCc
Q 046427 387 LGGLA---------VQLVAGGSGVKS----VKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGL 453 (595)
Q Consensus 387 lG~l~---------~qL~~g~~~~k~----v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI 453 (595)
...++ ..+.++ .+++ +++++.+++. +|.+++..|+..+ ..|+.+..+-..+.++.+--++..+
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~--~fr~~la~~tRia~~~p~-lw~dI~~~N~~~~-~~l~~~~~~l~~l~~~l~~~d~~~l 339 (374)
T PRK11199 264 GLHLAKENVDLEQLLALSSP--IYRLELAMVGRLFAQDPQ-LYADIIMSSPENL-ALIKRYYQRFGEALELLEQGDKQAF 339 (374)
T ss_pred HHHHHHcCCCHHHHHHhcCh--HHHHHHHHHHHHHcCCHH-HHHHHHHhChhHH-HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 22221 123444 6888 8999999998 9999999998877 7776666655566666554444433
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-11 Score=114.16 Aligned_cols=104 Identities=32% Similarity=0.501 Sum_probs=77.1
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
...+.||++.|+|||.+|+.+|+.|+++|.+|++++.++ ..-+|...|++..+++++++++|+++.++- ..+++.
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccC
Confidence 457999999999999999999999999999999999877 445677889998899999999999998875 577889
Q ss_pred HHHHhcCCCceEEEeccCCch-hcHHHHHH
Q 046427 266 DEAFFKMKKGVRIVNVARGGV-VDEEALVR 294 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~-vd~~aL~~ 294 (595)
.+.|.+||+|+++.|++.-.. +|.+.|.+
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 999999999999999986443 24444433
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-11 Score=142.22 Aligned_cols=243 Identities=14% Similarity=0.124 Sum_probs=157.3
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhc-cccCEEEEeCCCChhccccccHHH
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAI-STADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell-~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
+-++|||||+|+||+.+|+.++.+|++|++||++.....+.+.|+... ++++++ .+||+|++|+|. ..+..++....
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l~ 129 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSLP 129 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhhh
Confidence 345899999999999999999999999999998765555667787543 688866 569999999995 56888886654
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe-cCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD-VFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEI 347 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD-v~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~ 347 (595)
+..|+++++|+|+++-+..-.+++.+.+..+.- -.+.. .|+.|. ..+. |..-.++++|.+.+...+ ....
T Consensus 130 ~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~-~v~~HPMaG~e~--~~~g-~~~~~~~~~~~~~~~~~~-----~~~~ 200 (667)
T PLN02712 130 LQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFD-IICSHPMFGPQS--AKHG-WDGLRFVYEKVRIGNEEL-----RVSR 200 (667)
T ss_pred hhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCe-EEeeCCcCCCcc--ccch-hccCcEEEeeccCCCccc-----cHHH
Confidence 566999999999987665444555666654421 12221 233332 1111 233347777755322111 1233
Q ss_pred HHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHHHHHH--hcCC---CCceEEEEEEeecCCCCCcccc
Q 046427 348 AEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGLAVQL--VAGG---SGVKSVKVSYASARGPDDLDTR 420 (595)
Q Consensus 348 ~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l~~qL--~~g~---~~~k~v~i~~~Gs~a~~~~~~~ 420 (595)
++.+.++++..+.+.....|..|+..++.++ ||+ +|..+..+.-.. ...+ ..++-+++++.+++. +|+++.
T Consensus 201 ~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~-la~~L~~~~~~~~~~~~~~~~~~l~l~~Ria~~~p~-L~~dI~ 278 (667)
T PLN02712 201 CKSFLEVFEREGCKMVEMSCTEHDKYAAESQFITHT-VGRVLEMLKLESTPINTKGYESLLDLVENTCGDSFD-LYYGLF 278 (667)
T ss_pred HHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHH-HHHHHHHhcccccccCCccHHHHHHHHHHHhcCCHH-HHHHHH
Confidence 4455666666667778888999999999888 775 333333221000 0000 001123566788887 999999
Q ss_pred cchHHHHHhhcccccccccccccHHH
Q 046427 421 LLRAMITKGIIEPISSVFVNLVNADF 446 (595)
Q Consensus 421 ~~~~a~l~GlL~~~~~~~vn~~nA~~ 446 (595)
..|+.++ ..|+.+..+-..+++++.
T Consensus 279 ~~N~~~~-~~l~~~~~~l~~~~~~l~ 303 (667)
T PLN02712 279 MYNKNSL-EMLERLDLAFEALRKQLF 303 (667)
T ss_pred HhCHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999544 567776665566666654
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-11 Score=124.21 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=102.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc--HH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN--DE 267 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~--~~ 267 (595)
.+|||||||.||..+|++|...|+.|.+||+.+. .+...+.|.... +..|+.++||+|++|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 4799999999999999999999999999999873 344556687655 788999999999999999999999885 56
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe--cCCCCC
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD--VFTEEP 313 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD--v~~~EP 313 (595)
.++.||+|.++||+++........+.+++++..+ -.+| |.+..+
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~--~~lDAPVsGg~~ 126 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGL--EFLDAPVSGGVP 126 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCC--cEEecCccCCch
Confidence 8889999999999999999999999999999877 4455 455444
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-11 Score=141.33 Aligned_cols=216 Identities=21% Similarity=0.191 Sum_probs=147.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCc-HHHHHHcCCc---ccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQ-ADRARATGVG---LVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~-~~~a~~~g~~---~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
++|+|||+|.||+++|+.++..| .+|++||++.. .+.+.+.|+. ..++++++++||+|++|+|.. ....++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~- 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA- 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH-
Confidence 68999999999999999999888 58999998763 3445566763 236888899999999999953 4555543
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCC---------CCCcccccCCcEEEcCCCCCCcH
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP---------AKDSKLVLHENVTVTPHLGASTT 337 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~---------~~~~~L~~~~nvilTPHi~~~t~ 337 (595)
+....++++++++|++..+....+.+.+.+....+ .+..+-|. .++..||...+++++|+-... .
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~-~ 155 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD-P 155 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC-H
Confidence 33345788999999998664445555555543222 11222221 234578899999999975433 3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chh---HHHHHHH-----HHHHHHhcCCCCceEEEEE
Q 046427 338 EAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFV---TLAEKLG-----GLAVQLVAGGSGVKSVKVS 407 (595)
Q Consensus 338 ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~---~la~rlG-----~l~~qL~~g~~~~k~v~i~ 407 (595)
+. .+.+.++++.-+....+..+..++..+...+ ||+ .+++.+. ..+..++++ .|++.++.
T Consensus 156 ~~--------~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~~~~~~~a~~--~f~~~tRi 225 (735)
T PRK14806 156 AA--------LARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLANREDNLDIFRYAAG--GFRDFTRI 225 (735)
T ss_pred HH--------HHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHhhcCChhHHHhhhcc--chhccccc
Confidence 22 2344555555454455556777787777666 774 2333332 234577777 89999999
Q ss_pred EeecCCCCCcccccchHHHH
Q 046427 408 YASARGPDDLDTRLLRAMIT 427 (595)
Q Consensus 408 ~~Gs~a~~~~~~~~~~~a~l 427 (595)
+.+++. +|.+...+++..+
T Consensus 226 a~~~p~-~~~di~~~n~~~~ 244 (735)
T PRK14806 226 AASDPV-MWHDIFLANKEAV 244 (735)
T ss_pred ccCCHH-HHHHHHHHhHHHH
Confidence 999998 8999988887654
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=121.82 Aligned_cols=121 Identities=16% Similarity=0.243 Sum_probs=95.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc--HHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN--DEA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~--~~~ 268 (595)
++|||||+|.||+.+|+.+...|++|++||++.. .+...+.|+..+ ++++++++||+|++|+|....++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 5799999999999999999999999999999763 344455666544 789999999999999998887777763 235
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCC
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP 313 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP 313 (595)
+..+++|.++||+++......+++.+.+.+..+...---|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 677899999999999998888888888877654322223454443
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=121.18 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=89.9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccc-c-HHHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMF-N-DEAF 269 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li-~-~~~l 269 (595)
+|||||+|.||+.+|+++...|++|.+||++.. .+.+.+.|... .+..+++++||+|++|+|..+.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 489999999999999999999999999999863 34445566643 478899999999999999887777765 3 2356
Q ss_pred hcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 270 FKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 270 ~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
..+++|+++||+++....+.+++.+.+++..+
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~ 112 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGI 112 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 77899999999999998888899999987644
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-10 Score=118.89 Aligned_cols=113 Identities=16% Similarity=0.251 Sum_probs=93.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccH--HH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFND--EA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~--~~ 268 (595)
++|||||+|.||..+|+.+...|++|.+||++.. .+...+.|... .+..+++++||+|++|+|....++.++.. ..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 3799999999999999999999999999999763 34444556643 47889999999999999987767777642 35
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD 307 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD 307 (595)
+..+++|.++||++++.....+.+.+.+.+..+. .+|
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~ld 118 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMD 118 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 6678999999999999999999999999887663 455
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.5e-12 Score=127.65 Aligned_cols=224 Identities=19% Similarity=0.124 Sum_probs=148.6
Q ss_pred HHHHHhcCC--CEEEEECCCC-cHHHHHHcCCcc--cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 207 VARRAKGLG--MNVIAHDPYA-QADRARATGVGL--VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 207 vA~~l~~~G--~~V~~~d~~~-~~~~a~~~g~~~--~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
+|+.|+..| .+|++||++. ....+.+.|+.. .+-.+.+++||+|++|+|. ..+..++. +....+++|++++|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l~-~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVLE-EIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHHH-HHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHHH-HhhhhcCCCcEEEEe
Confidence 467777666 8999999987 455666788743 2325789999999999995 44666663 344568999999999
Q ss_pred cCCchhcHHHHHHHHhcC-CeeE----EEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 046427 282 ARGGVVDEEALVRALDSG-IISQ----AALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALK 356 (595)
Q Consensus 282 arg~~vd~~aL~~aL~~g-~i~g----a~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~ 356 (595)
+.-+.--.+++.+.+..+ ++.| +|-+..+.+ .++..||+..++++||+-... .+..+.+.++++
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~--~a~~~lf~g~~~il~p~~~~~---------~~~~~~~~~l~~ 147 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPE--AADADLFEGRNWILCPGEDTD---------PEALELVEELWE 147 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGG--G-TTTTTTTSEEEEEECTTS----------HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCCccccch--hhcccccCCCeEEEeCCCCCh---------HHHHHHHHHHHH
Confidence 988776677777777622 3322 333333333 457789999999999986422 234456777777
Q ss_pred CCCCCccccCCCCChhhhhccc--chhHHHHHHH---------HHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHH
Q 046427 357 GELAATAVNAPMVPAEVISELA--PFVTLAEKLG---------GLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAM 425 (595)
Q Consensus 357 g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG---------~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a 425 (595)
..+.+.....|..|+..++.++ ||+....... ....+++++ .|++.++.+.+++. +|.+++..|+.
T Consensus 148 ~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~--~frd~tRia~~~p~-l~~~I~~~N~~ 224 (258)
T PF02153_consen 148 ALGARVVEMDAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGG--GFRDMTRIASSDPE-LWADIFLSNPE 224 (258)
T ss_dssp HCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTH--HHHHHHGGGGS-HH-HHHHHHHHTHH
T ss_pred HCCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcch--hHHhhcccccCChH-HHHHHHHHCHH
Confidence 6667778888999999999998 8876555444 123456666 79999988888887 89999999998
Q ss_pred HHHhhcccccccccccccHHH
Q 046427 426 ITKGIIEPISSVFVNLVNADF 446 (595)
Q Consensus 426 ~l~GlL~~~~~~~vn~~nA~~ 446 (595)
.+...|+.+..+..++.++++
T Consensus 225 ~~~~~l~~~~~~L~~l~~~l~ 245 (258)
T PF02153_consen 225 NLLEALDEFIKELNELREALE 245 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666667666665555555544
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF03315 SDH_beta: Serine dehydratase beta chain; InterPro: IPR005131 L-serine dehydratase is found as a heterodimer of alpha and beta chain or as a fusion of the two chains in a single protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-11 Score=114.95 Aligned_cols=120 Identities=10% Similarity=-0.020 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHhcCC---CCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccH------------
Q 046427 380 FVTLAEKLGGLAVQLVAGG---SGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNA------------ 444 (595)
Q Consensus 380 ~~~la~rlG~l~~qL~~g~---~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA------------ 444 (595)
|-.=..|+|+.+++++.+. ..+.+|++.++||++ .|+++|++|+|++.|||+. ..+++++...
T Consensus 16 HT~Gpmra~~~f~~~l~~~~~l~~~~~v~v~l~GSla-~Tg~GHgTD~Av~~GLlG~-~p~~~~~~~~~~~~~~~~~~~~ 93 (157)
T PF03315_consen 16 HTVGPMRAARRFRQLLGEQGLLPQVARVRVDLYGSLA-ATGKGHGTDRAVLAGLLGE-DPEDVDPDSIPERLERIREENR 93 (157)
T ss_dssp TTHHHHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHH-HT-TTSSHHHHHHHHCTT---TTTS-GGGHHHHHHHHHHHTE
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeechhH-HhCCCcccchhheeccccc-CCcccchhhhHHHHHHhhcCCE
Confidence 4455568888888888651 147899999999999 9999999999999999955 5568888832
Q ss_pred HHHHhhCCce------EEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEE-EEeCCeeEEEEEcc
Q 046427 445 DFIAKQRGLR------VTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGS 512 (595)
Q Consensus 445 ~~iA~e~GI~------v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~G-SvgGG~i~I~~Idg 512 (595)
+.++.++.|. +.|...+..+.|||+..+...+.. ++..++..+ |||||.|++.++||
T Consensus 94 L~l~~~~~i~f~~~~dI~f~~~~~~~~HPNtm~~~a~d~~-----------g~~~~~~t~ySIGGGfI~~~~~~~ 157 (157)
T PF03315_consen 94 LRLAGEREIPFDPERDIIFHPEEFLPFHPNTMRFEAYDAD-----------GGELLEETYYSIGGGFIVIEEENG 157 (157)
T ss_dssp EEETTTEEEE--HHHHEEEETT---SS-SSEEEEEEE-TT-----------S-EEEEEEEEEETTTEEEETTTT-
T ss_pred EEECCCcccccccCCCeEEEeccCCCCCCCEEEEEEEeCC-----------CCEEEEEEEEEeCCeEEEEeeecC
Confidence 2222223222 223333333589999998887542 456778888 99999998876654
|
This enzyme catalyses the deamination of serine to form pyruvate and is part of the gluconeogenesis pathway.; GO: 0003941 L-serine ammonia-lyase activity, 0051539 4 iron, 4 sulfur cluster binding, 0006094 gluconeogenesis; PDB: 2IQQ_A 2IAF_A. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-10 Score=116.93 Aligned_cols=111 Identities=23% Similarity=0.319 Sum_probs=92.6
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccc---cCEEEEeCCCChhccccccHHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAIST---ADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~---aD~V~l~~Plt~~t~~li~~~~ 268 (595)
+|||||+|+||+.+|+++...|++|++||++.. .+...+.|+... ++++++++ +|+|++|+|..+.++.+++ ..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HH
Confidence 699999999999999999999999999999763 344455676544 78898876 6999999998777888874 56
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD 307 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD 307 (595)
+..+++|.++||+++....+..++.+.+.+..+ ..+|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~--~~vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGI--HYVD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCC--eEEe
Confidence 677899999999999999999999999887665 3466
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-10 Score=119.03 Aligned_cols=95 Identities=24% Similarity=0.402 Sum_probs=79.5
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC--cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA--QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
..|+||+|||||+|+||+++|+.|+.+|++|+++++.. ....+.+.|+...+.++++++||+|++++|.+.. ..+++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~ 91 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE 91 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence 46899999999999999999999999999999887653 3445666788777999999999999999997654 77777
Q ss_pred HHHHhcCCCceEEEeccCC
Q 046427 266 DEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg 284 (595)
++.+..|++|++| -.+.|
T Consensus 92 ~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 92 EEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHhcCCCCCEE-EECCC
Confidence 7788889999988 44455
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.5e-10 Score=119.79 Aligned_cols=104 Identities=28% Similarity=0.437 Sum_probs=89.4
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+..+.|++++|+|+|.||+.+|+.++++|++|+++|+++ ....+...|+..++++++++.+|+|+.|+. +.++++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHHH
Confidence 456899999999999999999999999999999998876 456778889877788899999999998764 466788
Q ss_pred HHHHhcCCCceEEEeccCCch-hcHHHHHH
Q 046427 266 DEAFFKMKKGVRIVNVARGGV-VDEEALVR 294 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~-vd~~aL~~ 294 (595)
...+..||+|++++|+|+..+ +|..+|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999875 66666654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-09 Score=112.64 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=92.9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccc---cCEEEEeCCCChhccccccHHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAIST---ADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~---aD~V~l~~Plt~~t~~li~~~~ 268 (595)
+|||||+|.||+.+|+++...|.+|.+||++.. .+.+.+.|+... +++++++. +|+|++|+|..+.+..+++ ..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-EL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH-HH
Confidence 799999999999999999999999999999863 344556677654 78888876 6999999998767777773 56
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEec
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDV 308 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv 308 (595)
+..+++|.++||++++.......+.+.+++..+ ..+|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~--~~~da 118 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGI--HFVDV 118 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCC--EEEeC
Confidence 677999999999999999888888899888776 34563
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-09 Score=111.66 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=90.9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccH--HHHh
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFND--EAFF 270 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~--~~l~ 270 (595)
+|||||+|+||+.+|+++...|++|.+||+....+...+.|... .+..+++++||+|++|+|..++.+.++.. ..+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 69999999999999999999999999999876444445567654 37889999999999999987777777632 2466
Q ss_pred cCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe
Q 046427 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD 307 (595)
Q Consensus 271 ~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD 307 (595)
.+++|.++||++....-....+.+.+.+..+ ..+|
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~--~~vd 116 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGG--DYLD 116 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCC--CEEE
Confidence 7899999999999988888888888877644 3455
|
|
| >PRK15040 L-serine dehydratase TdcG; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=114.52 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=102.5
Q ss_pred hhHHHHHHHHH-HHHHhcCC--CCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccH---HHHHhhC--
Q 046427 380 FVTLAEKLGGL-AVQLVAGG--SGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNA---DFIAKQR-- 451 (595)
Q Consensus 380 ~~~la~rlG~l-~~qL~~g~--~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA---~~iA~e~-- 451 (595)
|-.=+.|+|+. +++|.... ..+++++++++|||+ .|+++|++|+|++.||| ++..+++++.++ +++++++
T Consensus 18 HTvGPmraa~~F~~~L~~~~~l~~~~~v~i~LyGSLA-~TGkGHgTD~Avl~GLl-G~~Pd~~~~~~~~~~~~~~~~~~~ 95 (454)
T PRK15040 18 HTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLS-LTGKGHATDVAIIMGLA-GNSPQDVVIDEIPAFIELVTRSGR 95 (454)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHHhhc-cCCcccCChhhhHHHHHHHHHcCc
Confidence 44445677765 66665510 168999999999999 99999999999999999 556679999998 8888887
Q ss_pred -----Cc---------eEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEE-EEeCCeeEEEEEcceEEE
Q 046427 452 -----GL---------RVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGSFGVD 516 (595)
Q Consensus 452 -----GI---------~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~G-SvgGG~i~I~~Idgf~v~ 516 (595)
|+ ++.|...++ +.|||+..+...+. ++..++..+ |||||.|++-+ ++.-+
T Consensus 96 l~l~~G~~~i~f~~~~di~f~~~~l-p~HPN~m~~~a~~~------------~~~~~e~~~ySIGGGfI~~~~--~~~~~ 160 (454)
T PRK15040 96 LPVASGAHIVDFPVAKNIIFHPEML-PRHENGMRITAWKG------------QEELLSKTYYSVGGGFIVEEE--HFGLS 160 (454)
T ss_pred cccCCCCccccCCCCCceEECCCCC-CCCCCeeEEEEEcC------------CCcEEEEEEEEcCCceeeecc--ccccc
Confidence 77 788865544 57999999887653 223446677 88899887542 11110
Q ss_pred eecCccEEEEEecCCC---CchhHHHhhhhcCCccccceEe
Q 046427 517 VSLEGSIILCRQVDQP---GIIGKVGSLLGDNNVNVNFMSV 554 (595)
Q Consensus 517 ~~~~~~~Liv~~~D~p---G~I~~I~~~L~~~~INIa~m~v 554 (595)
. .. ..+.| .-...+...-.+++++|..+.+
T Consensus 161 ~-~~-------~~~~py~f~s~~ell~~c~~~~~~i~e~v~ 193 (454)
T PRK15040 161 H-DV-------ETSVPYDFHSAGELLKMCDYNGLSISGLMM 193 (454)
T ss_pred c-CC-------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 0 00 11222 2334455556677888887655
|
|
| >cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-09 Score=86.20 Aligned_cols=73 Identities=38% Similarity=0.696 Sum_probs=67.7
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEEeC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i~~ 595 (595)
++++.++|+||.+++|+++|+++|+||.++.+.+...++.+.+++.+|.+.+++++++|++.++|.+++++++
T Consensus 1 ~l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~l~~~~~v~~v~~~~~ 73 (73)
T cd04902 1 MLVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGILSAKVVEL 73 (73)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCCCHHHHHHHHcCCCccEEEEEeC
Confidence 3678999999999999999999999999999988767789999999999988899999999999999999875
|
The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.1e-09 Score=115.84 Aligned_cols=120 Identities=11% Similarity=0.093 Sum_probs=97.9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH----cCCc----ccCHHHhccc---cCEEEEeCCCChhcc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA----TGVG----LVSFEEAIST---ADFISLHMPLTPATS 261 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----~g~~----~~~l~ell~~---aD~V~l~~Plt~~t~ 261 (595)
+|||||||.||+.+|+++...|++|.+||+.... +...+ .|.. ..+++|+.+. +|+|++|+|..+.+.
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 6999999999999999999999999999997632 22222 1532 3378888876 999999999998888
Q ss_pred ccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP 314 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~ 314 (595)
.++ ...+..|++|.++||++....-+...+.+.+++..+.....=|++.++.
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~g 139 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEG 139 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHH
Confidence 888 4578889999999999999999999999999888775555556777653
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-08 Score=103.37 Aligned_cols=174 Identities=19% Similarity=0.232 Sum_probs=113.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHH-------------------------cCCc-ccCHHHhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARA-------------------------TGVG-LVSFEEAIS 245 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~-------------------------~g~~-~~~l~ell~ 245 (595)
++|+|||.|.||.++|..+...|.+|+.||++.. .+.+.+ .++. ..++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999999999999998752 121111 1111 236888999
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCCCCCCCCCcccccCC
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
.||+|+.|+|...+.+.-+-++....++++++|+..+++- ....+.+.+... ++ .+++-| +|.+.++
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~r~--vg~Hf~--------~p~~~~~ 151 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPEKF--LALHFA--------NEIWKNN 151 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcccE--EEEcCC--------CCCCcCC
Confidence 9999999999665555444445556688899885444433 334556655432 34 444322 2344668
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 325 NVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 325 nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
.+.++|+-..+ .++.+.+.++++.-+...++..+..+....+.+. +++..|-+|
T Consensus 152 lvevv~~~~t~---------~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l 206 (287)
T PRK08293 152 TAEIMGHPGTD---------PEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALAL 206 (287)
T ss_pred eEEEeCCCCCC---------HHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHH
Confidence 88888875543 3445566666665555555555567777777665 666666555
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.3e-08 Score=102.16 Aligned_cols=108 Identities=23% Similarity=0.224 Sum_probs=78.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HH-----------HHHcC-------------CcccCHHHhcccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DR-----------ARATG-------------VGLVSFEEAISTA 247 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g-------------~~~~~l~ell~~a 247 (595)
++|||||+|.||..+|+.+...|++|++||++... +. ..+.| ....+-.+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999987632 21 11112 1222333568999
Q ss_pred CEEEEeCCCChhccccccHHHHhcCCCceEEE-eccCCchhcHHHHHHHHhc-CCeeE
Q 046427 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIV-NVARGGVVDEEALVRALDS-GIISQ 303 (595)
Q Consensus 248 D~V~l~~Plt~~t~~li~~~~l~~mk~gaili-N~arg~~vd~~aL~~aL~~-g~i~g 303 (595)
|+|+.|+|..++.+..+-.+....++++++|+ |+|.-. ...+.+.+.. .++.|
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~~~r~~g 139 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQRPQQVIG 139 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCCCcceEE
Confidence 99999999989888887776667789999886 787654 3445555543 34433
|
|
| >PRK15023 L-serine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.8e-09 Score=111.14 Aligned_cols=149 Identities=13% Similarity=-0.011 Sum_probs=98.7
Q ss_pred hhHHHHHHHHH-HHHHhcC--CCCceEEEEEEeecCCCCCcccccchHHHHHhhccccccccc------------ccccH
Q 046427 380 FVTLAEKLGGL-AVQLVAG--GSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFV------------NLVNA 444 (595)
Q Consensus 380 ~~~la~rlG~l-~~qL~~g--~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~v------------n~~nA 444 (595)
|-.=+.|+|+. +++|... ...+++++++++|||+ .|+++|++|+|++.|||+. ..+++ +..++
T Consensus 18 HTvGPmraa~~F~~~L~~~~~l~~~~rv~v~LyGSLA-~TGkGHGTD~Avl~GL~G~-~Pd~~d~~~~~~~~~~~~~~~~ 95 (454)
T PRK15023 18 HTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLS-LTGKGHHTDIAIIMGLAGN-EPATVDIDSIPGFIRDVEERER 95 (454)
T ss_pred hHHHHHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHhhhccC-CCCCcChhhhHHHHHHHhhcCc
Confidence 44455677775 6777621 1168999999999999 9999999999999999954 55576 66888
Q ss_pred HHHHhhCCceEEE--------EEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEE-EEeCCeeEEEEEcceEE
Q 046427 445 DFIAKQRGLRVTE--------ERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGSFGV 515 (595)
Q Consensus 445 ~~iA~e~GI~v~f--------~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~G-SvgGG~i~I~~Idgf~v 515 (595)
+.+++++ +++.| .+.++ +.|||+..+...+. ++...+..+ |||||.|++-+=.+.+
T Consensus 96 l~la~~~-~~i~F~~~~di~f~~~~l-p~HPN~m~f~a~~~------------~~~~~e~~~ySIGGGfI~~~~~~~~~- 160 (454)
T PRK15023 96 LLLAQGR-HEVDFPRDNGMRFHNGNL-PLHENGMQIHAYNG------------DEVVYSKTYYSIGGGFIVDEEHFGQD- 160 (454)
T ss_pred cccCCCC-ceeecCcccceeECCCCC-CCCCCeeEEEEEeC------------CCcEEEEEEEEcCCceeeeccccccc-
Confidence 8888665 67776 33333 56999999987753 223446677 8889988864211111
Q ss_pred EeecCccEEEEEecCCC---CchhHHHhhhhcCCccccceEe
Q 046427 516 DVSLEGSIILCRQVDQP---GIIGKVGSLLGDNNVNVNFMSV 554 (595)
Q Consensus 516 ~~~~~~~~Liv~~~D~p---G~I~~I~~~L~~~~INIa~m~v 554 (595)
. .. ..+.| .-...+...-.++++.|..+.+
T Consensus 161 -~-~~-------~~~~py~f~s~~ell~~c~~~~~~i~e~v~ 193 (454)
T PRK15023 161 -A-AN-------EVSVPYPFKSATELLAYCNETGYSLSGLAM 193 (454)
T ss_pred -c-cC-------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 0 00 11222 2333455555677777776655
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=105.50 Aligned_cols=107 Identities=16% Similarity=0.243 Sum_probs=84.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc-cCHHHh---ccccCEEEEeCCCChhccccccHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL-VSFEEA---ISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~~l~el---l~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
++|||||+|.||..+|+++...|++|.+||++.. .+...+.+... .+++++ ++++|+|++|+|.. .+..+++ +
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~-~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLE-E 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHH-H
Confidence 3799999999999999999999999999999863 34444555433 355554 56789999999976 7777774 5
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
....+++|.++||++.+...+...+.+.+++..+
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~ 112 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGI 112 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCC
Confidence 5677899999999999887788888888877655
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-08 Score=123.98 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=97.3
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccc--cH
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMF--ND 266 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li--~~ 266 (595)
..++||+||+|.||..||++|...|++|.+||++.. .+...+.|...+ +..++.++||+|++|+|..+..+.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 356899999999999999999999999999999863 345566777654 89999999999999999988888887 34
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCC--eeEEEEec
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGI--ISQAALDV 308 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~--i~ga~lDv 308 (595)
..+..+++|.++||+++...-....+.+.+.+.. + ..+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~--~~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQI--FLVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCce--EEEEc
Confidence 5677899999999999999888888988887765 4 45663
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=103.45 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=93.6
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc--
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN-- 265 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~-- 265 (595)
...++||+||+|.||+.++..|...|++|++||++.+ .....+.|.+.. +..|+.+.||+|+.++|...+.++++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 4578999999999999999999999999999999874 355677788765 799999999999999999888888874
Q ss_pred HHHHhcCCCceEE-EeccCCchhcHHHHHHHHhcCCe
Q 046427 266 DEAFFKMKKGVRI-VNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 266 ~~~l~~mk~gail-iN~arg~~vd~~aL~~aL~~g~i 301 (595)
...++..++|... ||.++-...-...+.+++.....
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~ 149 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGG 149 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCC
Confidence 3366667787776 89998777667788888877654
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=100.05 Aligned_cols=174 Identities=21% Similarity=0.207 Sum_probs=114.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHH-----------HcC---------Ccc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRAR-----------ATG---------VGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g---------~~~-~~l~ell~~aD~V 250 (595)
++|||||.|.||+.+|..+...|++|..||+.... +.+. +.+ +.. .++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999987531 1111 111 122 2788999999999
Q ss_pred EEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCCCCCCcccccCCcEEEc
Q 046427 251 SLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEEPPAKDSKLVLHENVTVT 329 (595)
Q Consensus 251 ~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~nvilT 329 (595)
+-|+|...+.+..+-++.-+.++++++ +.++..++ ...++.+.++. .++ .++.-|.+-+ .-||.+ |+-+
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aI-laSnTS~l-~~s~la~~~~~p~R~--~g~HffnP~~---~~pLVE---Vv~g 157 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAI-IASSTSGL-LPTDFYARATHPERC--VVGHPFNPVY---LLPLVE---VLGG 157 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeE-EEECCCcc-CHHHHHHhcCCcccE--EEEecCCccc---cCceEE---EeCC
Confidence 999999999888888887788999984 44444443 66667777654 355 5555554322 235553 4444
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 330 PHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 330 PHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
|+.. .++.+.+.+|++.-+-.+++-....+..+.+.+. +++.-|-+|
T Consensus 158 ~~T~-----------~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~l 205 (321)
T PRK07066 158 ERTA-----------PEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHL 205 (321)
T ss_pred CCCC-----------HHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHH
Confidence 4421 3445556666655443344333345556666665 666655555
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-08 Score=106.53 Aligned_cols=95 Identities=28% Similarity=0.384 Sum_probs=73.4
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC--cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA--QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
|+||+|||||+|+||+++|+.|+.+|++|+++++.. +.+.+.+.|+...+..+++++||+|++|+|...+ ...+.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~e 79 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQ-HEVYEAE 79 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhH-HHHHHHH
Confidence 578999999999999999999999999987755432 3344556788777889999999999999995433 3444455
Q ss_pred HHhcCCCceEEEeccCCch
Q 046427 268 AFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~ 286 (595)
....|+++. +|.++-|=-
T Consensus 80 i~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred HHhhCCCCc-EEEEeCCcc
Confidence 667788886 777777643
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-08 Score=104.72 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=87.0
Q ss_pred EEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc--HHHHhcC
Q 046427 197 VMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN--DEAFFKM 272 (595)
Q Consensus 197 IIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~--~~~l~~m 272 (595)
|||+|.||..+|+++...|++|.+||++.. .+...+.|+... ++.+++++||+|++|+|...+++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 689999999999999999999999999863 344556676544 789999999999999997677777762 4456678
Q ss_pred CCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe
Q 046427 273 KKGVRIVNVARGGVVDEEALVRALDSGIISQAALD 307 (595)
Q Consensus 273 k~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD 307 (595)
++|.++||++....-..+.+.+.+.+..+ ..+|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~--~~vd 113 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGA--VFMD 113 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCC--cEEE
Confidence 99999999998777667778887776544 2455
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.4e-08 Score=99.30 Aligned_cols=173 Identities=18% Similarity=0.151 Sum_probs=104.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHH-------HcC-----------------Ccc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRAR-------ATG-----------------VGL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-------~~g-----------------~~~-~~l~ell~~ 246 (595)
++|+|||+|.||+.+|..+...|++|++||++... +.+. +.+ +.. .++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999987532 2211 111 112 367889999
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEE-EeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCc
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRI-VNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHEN 325 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gail-iN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~n 325 (595)
||+|+.|+|...+.+..+-.+..+.++++++| +|+|.-.+ ..+.+.++. .-...+++.+ .|. ...+ =
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~--~Pv-~~~~-----L 149 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF--NPV-HKMK-----L 149 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC--CCc-ccCc-----e
Confidence 99999999977766655544555678999877 78877554 445555533 2223566666 343 2233 4
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 326 VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 326 vilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
+.+.|+-... .++.+.+..+++.-.....+. ...+..+.+.+. +++..|.++
T Consensus 150 ve~v~g~~t~---------~~~~~~~~~~l~~lg~~~v~v-~d~~Gf~~nRl~~~~~~ea~~~ 202 (288)
T PRK09260 150 VELIRGLETS---------DETVQVAKEVAEQMGKETVVV-NEFPGFVTSRISALVGNEAFYM 202 (288)
T ss_pred EEEeCCCCCC---------HHHHHHHHHHHHHcCCeEEEe-cCcccHHHHHHHHHHHHHHHHH
Confidence 4566653322 233445555554333222222 233344444443 555555444
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.1e-09 Score=112.15 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=79.4
Q ss_pred cccccccc-e-eeecCCEEEEEeCChHHHHHHHHHhcCCCEEE------EECCCC-cHHHHHHcCCcccCHHHhccccCE
Q 046427 179 KWQRNKYV-G-VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVI------AHDPYA-QADRARATGVGLVSFEEAISTADF 249 (595)
Q Consensus 179 ~W~~~~~~-g-~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~------~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~ 249 (595)
-|.+..|. + ..|+||||+|||+|.+|+.-|..++..|.+|+ +.|... +.+.+.+.|+...+++|++++||+
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADv 100 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADL 100 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCE
Confidence 48776552 2 46999999999999999988877787788777 233322 445566778888899999999999
Q ss_pred EEEeCCCChhccccccHHHHhcCCCceEEE
Q 046427 250 ISLHMPLTPATSKMFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 250 V~l~~Plt~~t~~li~~~~l~~mk~gaili 279 (595)
|++.+|.+ + .+.+.++.+..||+|+.|.
T Consensus 101 VviLlPDt-~-q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 101 VINLTPDK-Q-HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred EEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence 99999998 3 7777799999999998875
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-08 Score=122.04 Aligned_cols=107 Identities=19% Similarity=0.145 Sum_probs=91.1
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccc--cHH
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMF--NDE 267 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li--~~~ 267 (595)
.++|||||+|.||..+|++|...|++|.+||++.. .+...+.|.. ..+..+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 47899999999999999999999999999998763 3344555654 3488999999999999999888888887 345
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.+..+++|.++||++....-..+.+.+.+.+
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 6788999999999999998778888888876
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-08 Score=104.49 Aligned_cols=102 Identities=32% Similarity=0.468 Sum_probs=86.8
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
.-+.||++.|.|||..|+.+|.++++.|++|++..-.+ ..-.+...|++..++++....+|+++.++- ++++|..
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccC----CcCccCH
Confidence 35899999999999999999999999999999986555 334567789999999999999999999874 7899999
Q ss_pred HHHhcCCCceEEEeccCCch-hcHHHHH
Q 046427 267 EAFFKMKKGVRIVNVARGGV-VDEEALV 293 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~-vd~~aL~ 293 (595)
+.|..||+|+++-|.+.=.+ ||.+.|.
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~ 308 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLE 308 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHH
Confidence 99999999999999986444 3455543
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-08 Score=95.04 Aligned_cols=90 Identities=31% Similarity=0.483 Sum_probs=68.1
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC--cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA--QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
|+||+|+|||||..|.+.|..|+..|.+|++-.+.. +.+.+++.|++..++.|+.++||+|++.+|.. ....+..++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~-~q~~vy~~~ 80 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDE-VQPEVYEEE 80 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HH-HHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChH-HHHHHHHHH
Confidence 689999999999999999999999999998765543 56788999999999999999999999999953 345555666
Q ss_pred HHhcCCCceEEEe
Q 046427 268 AFFKMKKGVRIVN 280 (595)
Q Consensus 268 ~l~~mk~gailiN 280 (595)
....||+|..|+=
T Consensus 81 I~p~l~~G~~L~f 93 (165)
T PF07991_consen 81 IAPNLKPGATLVF 93 (165)
T ss_dssp HHHHS-TT-EEEE
T ss_pred HHhhCCCCCEEEe
Confidence 7778999987764
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-08 Score=108.89 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=94.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH----cCCc---ccCHHHhcc---ccCEEEEeCCCChhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA----TGVG---LVSFEEAIS---TADFISLHMPLTPATS 261 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----~g~~---~~~l~ell~---~aD~V~l~~Plt~~t~ 261 (595)
.+|||||+|.||+.+|++|...|++|.+||++... +...+ .|.. ..+++++++ ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 37999999999999999999999999999997632 22222 1432 347888886 5999999999888888
Q ss_pred ccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE 312 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~E 312 (595)
.++ .+.+..+++|.+|||++.+..-+...+.+.+.+..+.....=|++.+
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~ 131 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGE 131 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCH
Confidence 888 45677899999999999999889999999998877743433355554
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=103.81 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=74.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc---ccCHHHh---------------ccccCEEEEeC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG---LVSFEEA---------------ISTADFISLHM 254 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~---~~~l~el---------------l~~aD~V~l~~ 254 (595)
++|+|||+|.||..+|..|...|++|++||++...-.....|.. ...++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 68999999999999999999999999999987643223333321 1234444 34799999999
Q ss_pred CCC------hhccccc--cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 255 PLT------PATSKMF--NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 255 Plt------~~t~~li--~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
|.. ++...+. -......+++|+++|+.+....-..+.+...+.+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 953 1222222 1345567899999999998776666666665554
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-07 Score=94.47 Aligned_cols=112 Identities=17% Similarity=0.257 Sum_probs=78.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHH-----------HcC-------------Cccc-CHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRAR-----------ATG-------------VGLV-SFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------~~~~-~l~ell~~ 246 (595)
++|+|||.|.||..+|..+...|++|++||++... +.+. +.| +... +++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 68999999999999999999999999999987532 2211 112 1222 454 5789
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEE-eccCCchhcHHHHHHHHhc-CCeeEEEEecCC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV-NVARGGVVDEEALVRALDS-GIISQAALDVFT 310 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili-N~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~ 310 (595)
||+|+.|+|...+.+..+-++....++++++|+ |++.-.+ .++.+.+.. .++ .++..+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~~r~--~g~h~~~ 144 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRPERF--IGIHFMN 144 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCcccE--EEeeccC
Confidence 999999999876655554455566789999887 6665443 356666542 344 4555555
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=105.16 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=89.3
Q ss_pred EEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc---C--Cc-ccCHHHhc---cccCEEEEeCCCChhccccc
Q 046427 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT---G--VG-LVSFEEAI---STADFISLHMPLTPATSKMF 264 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~---g--~~-~~~l~ell---~~aD~V~l~~Plt~~t~~li 264 (595)
|||||+|.||+.+|+++...|++|.+||++.. .+...+. | +. ..+++++. +++|+|++|+|..+.+..++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi 81 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI 81 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence 89999999999999999999999999999763 2333333 2 32 23666665 57999999999877788887
Q ss_pred cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCC
Q 046427 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE 312 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~E 312 (595)
+ ..+..+++|.++||++....-+.....+.+.+..+.....=|++.+
T Consensus 82 ~-~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 82 N-QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred H-HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 4 4667789999999999988888888888888776643333345544
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.1e-08 Score=77.16 Aligned_cols=68 Identities=24% Similarity=0.459 Sum_probs=60.9
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
+++.+.|+||++++|++.|+++++||.+|.... .++.|++.++++....++++++|+++++|.+|+++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSEVSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEEEC
Confidence 567899999999999999999999999997643 34789999999999888999999999999999874
|
The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent- |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-07 Score=99.99 Aligned_cols=83 Identities=20% Similarity=0.271 Sum_probs=68.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
.+++|||||+|.+|+.+|+++...|++|.+||++.. .++++++++||+|++|+|. +..+.+++.-...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~l~~~ 70 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQVQAL 70 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHHHHHh
Confidence 357899999999999999999999999999998642 3678889999999999996 5677777432122
Q ss_pred cCCCceEEEeccCCc
Q 046427 271 KMKKGVRIVNVARGG 285 (595)
Q Consensus 271 ~mk~gailiN~arg~ 285 (595)
.+++++++|++++|-
T Consensus 71 ~~~~~~ivi~~s~gi 85 (308)
T PRK14619 71 NLPPETIIVTATKGL 85 (308)
T ss_pred cCCCCcEEEEeCCcc
Confidence 478999999998743
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-07 Score=90.98 Aligned_cols=108 Identities=31% Similarity=0.344 Sum_probs=80.9
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-HHcCCcccCHHHhcc-ccCEEEEeCCCChhcccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-RATGVGLVSFEEAIS-TADFISLHMPLTPATSKM 263 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~g~~~~~l~ell~-~aD~V~l~~Plt~~t~~l 263 (595)
+.+++||+++|+|+|+||+.+|+.|..+|++|+++|++... ... ...+...++.++++. +||+++.|.. .++
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-----ccc
Confidence 45799999999999999999999999999999999987632 222 333666666677775 7999987664 467
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
|+++.++.|+. .+++.-+-+.+-| ..-.+.|++..+
T Consensus 98 I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi 133 (200)
T cd01075 98 INDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGI 133 (200)
T ss_pred cCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCC
Confidence 88888888874 4777777777655 333555666555
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-07 Score=100.87 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=92.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc-----------------ccCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG-----------------LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-----------------~~~l~ell~~aD~V~l~~P 255 (595)
.+|||||+|.||..+|..+.. |++|++||.+...-.....|.. ..+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 689999999999999999877 6999999988643222223331 2233457899999999999
Q ss_pred CC------hhcccccc--HHHHhcCCCceEEEeccCCchhcHHHHHHH-Hhc--CCeeEEEEe-cCCCCCCCCC---ccc
Q 046427 256 LT------PATSKMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRA-LDS--GIISQAALD-VFTEEPPAKD---SKL 320 (595)
Q Consensus 256 lt------~~t~~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~a-L~~--g~i~ga~lD-v~~~EP~~~~---~~L 320 (595)
.. ++...+.. ......+++|.++|+.|+-.+-..+.+++. +.+ |.-.+-... +|.+||.... ..+
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 54 23344442 345577899999999999887766655443 433 321111111 3667887543 345
Q ss_pred ccCCcEEEcCCCCCCcHHH
Q 046427 321 VLHENVTVTPHLGASTTEA 339 (595)
Q Consensus 321 ~~~~nvilTPHi~~~t~ea 339 (595)
...+.+ ++|.+.++
T Consensus 166 ~~~~ri-----v~G~~~~~ 179 (425)
T PRK15182 166 TNIKKI-----TSGSTAQI 179 (425)
T ss_pred cCCCeE-----EECCCHHH
Confidence 566777 45555443
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.8e-07 Score=91.56 Aligned_cols=102 Identities=22% Similarity=0.269 Sum_probs=77.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC----EEEEE-CCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM----NVIAH-DPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
.+|||||+|+||+++|+.+...|+ +|++| |++.. .+.+.+.|+... +..+++++||+|++|+| .+....++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 379999999999999999998887 89999 87653 334455677544 78889999999999997 555777664
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+....++++.++|++..| +..+.+.+.+..
T Consensus 80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred -HHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 344557889998988655 356666665543
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.3e-07 Score=92.82 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=95.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHH-----------HHHcCC-------------cc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADR-----------ARATGV-------------GL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~-----------a~~~g~-------------~~-~~l~ell~~ 246 (595)
++|+|||+|.||.++|..+...|++|++||+... .+. ..+.|. .. .++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999999999999999999998752 121 112342 22 378889999
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcE
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENV 326 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nv 326 (595)
||+|+.|+|...+.+..+-.+.-...++.+++. .+... .....+.+.+..... ...|-+-+ |. +-.+=+
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts~-~~~~~la~~~~~~~~--~~~~hp~~-p~------~~~~lv 151 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTSA-LLASAFTEHLAGRER--CLVAHPIN-PP------YLIPVV 151 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCCC-CCHHHHHHhcCCccc--EEEEecCC-Cc------ccCceE
Confidence 999999999765444433232222345555443 33333 345667777754322 23333332 21 111336
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhcc
Q 046427 327 TVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISEL 377 (595)
Q Consensus 327 ilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~ 377 (595)
.++||-++. . +..+.+..+++.-....++..+..+..+.+.+
T Consensus 152 eiv~~~~t~-~--------~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl 193 (308)
T PRK06129 152 EVVPAPWTA-P--------ATLARAEALYRAAGQSPVRLRREIDGFVLNRL 193 (308)
T ss_pred EEeCCCCCC-H--------HHHHHHHHHHHHcCCEEEEecCCCccHHHHHH
Confidence 688876544 2 23344445544333333333344445455444
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=95.52 Aligned_cols=103 Identities=29% Similarity=0.416 Sum_probs=85.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
-+.||.+.|.|||.+|+..|+.|++||.+|++....+ ..-++...|++.++++|+.++.|+++.++ .++++|..+
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~ 286 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGE 286 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHH
Confidence 4789999999999999999999999999999964443 34456678999999999999999999965 578999999
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.|.+||.++|+.|++.- |.+-=+.+|+.
T Consensus 287 H~~~mk~d~IvCN~Ghf---d~EiDv~~L~~ 314 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHF---DTEIDVKWLNT 314 (434)
T ss_pred HHHhCcCCcEEeccccc---cceeehhhccC
Confidence 99999999999999753 33333444544
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-07 Score=82.01 Aligned_cols=88 Identities=25% Similarity=0.394 Sum_probs=65.3
Q ss_pred EEEEEeCChHHHHHHHHHhcCC---CEEE-EECCCCc--HHHHHHcCCccc--CHHHhccccCEEEEeCCCChhcccccc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLG---MNVI-AHDPYAQ--ADRARATGVGLV--SFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G---~~V~-~~d~~~~--~~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
||||||+|+||.++++.+...| .+|+ +++++.. .+.+.+.++... +..+++++||+|++|+|. .....++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHHH
Confidence 6999999999999999999999 8999 5588763 234456665433 689999999999999994 34555443
Q ss_pred HHHHhcCCCceEEEeccCC
Q 046427 266 DEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg 284 (595)
.- ....++.++|++.-|
T Consensus 80 ~i--~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 80 EI--PHLLKGKLVISIAAG 96 (96)
T ss_dssp HH--HHHHTTSEEEEESTT
T ss_pred HH--hhccCCCEEEEeCCC
Confidence 32 556788899988643
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-06 Score=90.80 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=93.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HH-----------HHHcCC-------------cc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DR-----------ARATGV-------------GL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g~-------------~~-~~l~ell~~ 246 (595)
++|||||.|.||+.+|..+...|++|+.||+.... +. ..+.|. +. .++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999987632 22 222231 12 256 55899
Q ss_pred cCEEEEeCCCChhccccccHHHHhcC-CCceEEEeccCCchhcHHHHHHHHh-cCCeeEEEEecCCCCCCCCCcccccCC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKM-KKGVRIVNVARGGVVDEEALVRALD-SGIISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~m-k~gailiN~arg~~vd~~aL~~aL~-~g~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
||+|+-|+|...+.+..+-.+.-+.+ +++++|++.+.+-.+. ++..++. ..++ .+++-|.+-| ..+|
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~--~la~~~~~~~r~--~g~hf~~P~~---~~~l---- 153 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM--KLAAATKRPGRV--LGLHFFNPVP---VLPL---- 153 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCCccE--EEEecCCCcc---cCce----
Confidence 99999999999888877755433334 7899998877665443 3344432 2344 5666666332 2333
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 046427 325 NVTVTPHLGASTTEAQEGVAIEIAEAVIGALK 356 (595)
Q Consensus 325 nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~ 356 (595)
+=++||.+++ .++++.+..|+.
T Consensus 154 -vElv~~~~T~---------~~~~~~~~~~~~ 175 (286)
T PRK07819 154 -VELVPTLVTS---------EATVARAEEFAS 175 (286)
T ss_pred -EEEeCCCCCC---------HHHHHHHHHHHH
Confidence 3456654444 345556666644
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=89.34 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=72.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH------------HHHHcC-------------Cccc-CHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD------------RARATG-------------VGLV-SFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------------~a~~~g-------------~~~~-~l~ell~~ 246 (595)
++|+|||+|.||..+|..+...|++|++||++.... ...+.| +... +++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 579999999999999999999999999999875321 112233 1212 454 4799
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
||+|++|+|...+.+.-+-++.-..++++++|+....| +....+.+.+..
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999977766644444455668999988433333 455577777743
|
|
| >TIGR00720 sda_mono L-serine dehydratase, iron-sulfur-dependent, single chain form | Back alignment and domain information |
|---|
Probab=98.50 E-value=4e-07 Score=98.52 Aligned_cols=132 Identities=13% Similarity=-0.029 Sum_probs=86.3
Q ss_pred CceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccH------------HHHHhhCCceEEEEEeec-----
Q 046427 400 GVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNA------------DFIAKQRGLRVTEERIVL----- 462 (595)
Q Consensus 400 ~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA------------~~iA~e~GI~v~f~~~~~----- 462 (595)
.+++++++++|||+ .|.++|++|+|++.||++ +..++++.... +.++.+++|+|.|.....
T Consensus 41 ~~~rv~v~LyGSLA-~TGkGHgTD~Avl~GL~G-~~P~~vd~~~~~~~~~~~~~~~~l~l~~~~~i~f~~~~di~f~~~~ 118 (455)
T TIGR00720 41 QVTRVQVDLYGSLA-LTGKGHLTDIAILMGLAG-IYPNTVDIDTKKGFLHEVLENKVLKLAGQHHVPFDYANDLIFHNKP 118 (455)
T ss_pred CCcEEEEEEEchhh-hcCCCccccHHHHHHhcC-CCCCCcChhhhHHHHHHHHhcCeeecCCCCccccCcccceeeCCCC
Confidence 58999999999999 999999999999999994 45557766643 344556888877643222
Q ss_pred CCCCCCCceEEEEEeeeccccccccccCCce-EEEEE-EEeCCeeEEEEEcceEEEeecCccEEEEEecCCC---CchhH
Q 046427 463 DGSPENPLEFIQVQIANVESKFGSAISDIGD-IRVEG-RVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQP---GIIGK 537 (595)
Q Consensus 463 ~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~-~~v~G-SvgGG~i~I~~Idgf~v~~~~~~~~Liv~~~D~p---G~I~~ 537 (595)
.+.|||+..+...+. ++.. .+.++ |||||.|+.-+=.+.+. .. ..+.| --...
T Consensus 119 lp~HPNgm~f~a~d~------------~g~~l~~~t~ySIGGGfI~~~~~~~~~~---~~-------~~~~p~~f~s~~e 176 (455)
T TIGR00720 119 LPLHENGMTITAFNS------------KNEVLYEETYYSVGGGFIVTEKHFGSEE---DN-------NVSVAYPFKSAKE 176 (455)
T ss_pred CCCCCCeeEEEEEeC------------CCCEEEEEEEEEcCCceeeecccccccc---cc-------CCCCCcCCCCHHH
Confidence 357999998887764 2222 36667 88899876431101110 00 01122 23444
Q ss_pred HHhhhhcCCccccceEee
Q 046427 538 VGSLLGDNNVNVNFMSVG 555 (595)
Q Consensus 538 I~~~L~~~~INIa~m~v~ 555 (595)
+...-.+++++|..+.+.
T Consensus 177 ll~~~~~~~~~i~e~v~~ 194 (455)
T TIGR00720 177 LLELCQKHGKSISEIALL 194 (455)
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 666667778888877553
|
This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.9e-06 Score=88.99 Aligned_cols=109 Identities=21% Similarity=0.297 Sum_probs=71.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH-----cC--------------Ccc-cCHHHhccccCEEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA-----TG--------------VGL-VSFEEAISTADFIS 251 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----~g--------------~~~-~~l~ell~~aD~V~ 251 (595)
++|+|||+|.||+.+|..+...|++|++||++... +...+ .+ +.. .++++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 58999999999999999999999999999986522 22211 12 122 36778899999999
Q ss_pred EeCCCChhc-cccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEE
Q 046427 252 LHMPLTPAT-SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQA 304 (595)
Q Consensus 252 l~~Plt~~t-~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga 304 (595)
+|+|...+. ..++ .+.-..++++++|+....| + ....+.+.+.. .++.|+
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg-~-~~~~l~~~~~~~~~~ig~ 136 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG-L-PITAIAQAVTRPERFVGT 136 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC-C-CHHHHHhhcCCcccEEEE
Confidence 999976533 3333 3222346777766433333 2 45567776643 355444
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.3e-07 Score=92.06 Aligned_cols=102 Identities=20% Similarity=0.310 Sum_probs=77.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC----EEEEECCCCc-HHHHH-HcCCccc-CHHHhccccCEEEEeCCCChhcccccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM----NVIAHDPYAQ-ADRAR-ATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~-~~~a~-~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
++|||||+|+||+++++.+...|+ +|++||++.. .+.+. +.|+... +..+++++||+|++|+| ......++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl~ 81 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVIN 81 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHHH
Confidence 589999999999999999987664 7999998763 23333 3676544 68889999999999999 466776663
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+....++++.++|++.-|- +.+.|.+.+..
T Consensus 82 -~l~~~~~~~~lvISi~AGi--~i~~l~~~l~~ 111 (272)
T PRK12491 82 -QIKDQIKNDVIVVTIAAGK--SIKSTENEFDR 111 (272)
T ss_pred -HHHHhhcCCcEEEEeCCCC--cHHHHHHhcCC
Confidence 3334568889999998774 66677777753
|
|
| >cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.6e-07 Score=71.37 Aligned_cols=71 Identities=35% Similarity=0.623 Sum_probs=62.1
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
+|.+.+.|+||+++.+++.|+++++||.++.......++.+.+.+.+++...++++++|+++++|.+|+++
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHcCCCceEEEEC
Confidence 46778999999999999999999999999988653346678888999988777999999999999999875
|
The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.6e-07 Score=71.14 Aligned_cols=70 Identities=36% Similarity=0.612 Sum_probs=62.6
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
|.+...|+||+++.|+++|+++++||.++++.+...++.+.+.+.+++....+++++|+++++|.+|+++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEEEC
Confidence 6788999999999999999999999999999766545788889999888777999999999999999874
|
ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-06 Score=87.44 Aligned_cols=115 Identities=22% Similarity=0.244 Sum_probs=78.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH--------------cCC-------------ccc-CHHHh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA--------------TGV-------------GLV-SFEEA 243 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~--------------~g~-------------~~~-~l~el 243 (595)
++|+|||.|.||+.+|..+...|++|++||++... +.+.+ .|. ... ++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999987632 21110 111 111 34 56
Q ss_pred ccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCC
Q 046427 244 ISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEE 312 (595)
Q Consensus 244 l~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~E 312 (595)
+++||+|+.|+|...+.+.-+-++.-..++++++|+.+..|- ....+.+.+.. .++ .+++-|.+-
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~--ig~hf~~P~ 148 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRF--IGMHWFNPA 148 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccE--EEEecCCCc
Confidence 799999999999765544444344445578999998777663 55666676643 344 455545443
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.7e-07 Score=93.98 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=68.3
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||+|+|||.| .||+.+|.+|...|+.|..|++... ++.++.++||+|+++++.. +++.
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~----~~v~ 217 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRP----RLID 217 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCCh----hccc
Confidence 568999999999996 9999999999999999999986532 6889999999999999854 3555
Q ss_pred HHHHhcCCCceEEEeccCCc
Q 046427 266 DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~ 285 (595)
... +|+|+++||+|--.
T Consensus 218 ~~~---ik~GaiVIDvgin~ 234 (301)
T PRK14194 218 ADW---LKPGAVVIDVGINR 234 (301)
T ss_pred Hhh---ccCCcEEEEecccc
Confidence 543 79999999998544
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-06 Score=94.76 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=74.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHH-------------------HcC-Ccc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRAR-------------------ATG-VGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-------------------~~g-~~~-~~l~ell~~aD~V 250 (595)
++|||||+|.||+.+|..+...|++|.+||++... +... ..| +.. .++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 58999999999999999999999999999997632 1110 112 333 3788999999999
Q ss_pred EEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 251 SLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 251 ~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+.|+|...+.+..+-.+.-..++++++ |.++..++ ....+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCC
Confidence 999998766666443444445777765 55555554 45567776644
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.9e-06 Score=95.00 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=84.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHH-----------HHHcC-------------Ccc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADR-----------ARATG-------------VGL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~-----------a~~~g-------------~~~-~~l~ell~~ 246 (595)
++|||||+|.||+.||..+...|++|+.||++.. .+. ..+.| +.. .++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 5799999999999999999999999999998763 222 12334 222 25655 569
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEE-EeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRI-VNVARGGVVDEEALVRALDS-GIISQAALDVFTEEP 313 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gail-iN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP 313 (595)
||+|+.|+|...+.+..+-.+.-..++++++| +|+|.-.+ .++..++.. .++ .|++.|.+-|
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCcc
Confidence 99999999998888887765544557899999 59987665 356666543 344 5667676444
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-06 Score=94.31 Aligned_cols=101 Identities=25% Similarity=0.307 Sum_probs=71.4
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHH--------------------cC-Ccc-cCHHHhccccCEEE
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARA--------------------TG-VGL-VSFEEAISTADFIS 251 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~--------------------~g-~~~-~~l~ell~~aD~V~ 251 (595)
+|||||+|.||..+|..+...|++|++||++...-.... .| +.. .++++++++||+|+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence 799999999999999999999999999998753211111 23 222 26788899999999
Q ss_pred EeCCCChh------cccccc--HHHHhcCCCceEEEeccCCchhcHHHHHH
Q 046427 252 LHMPLTPA------TSKMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVR 294 (595)
Q Consensus 252 l~~Plt~~------t~~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~ 294 (595)
+|+|.... ...+.. ......+++|.++|+++.-.+=..+.+.+
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~ 132 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVK 132 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHH
Confidence 99995432 111221 33455689999999998655444555553
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=81.39 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=77.2
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCcH--HHHHHcCC-----cccCHHHhccccCEEEEeCCCChh-
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQA--DRARATGV-----GLVSFEEAISTADFISLHMPLTPA- 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g~-----~~~~l~ell~~aD~V~l~~Plt~~- 259 (595)
++.+++++|+|+|.||+.+++.+...| .+|.++|++... +.+.+.+. ...+++++++++|+|++|+|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 466889999999999999999999885 789999987632 22333342 334778889999999999997653
Q ss_pred ccc-cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCC
Q 046427 260 TSK-MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGI 300 (595)
Q Consensus 260 t~~-li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~ 300 (595)
... .+.. ..++++.+++|++..+.. + .+.+.+++..
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g 132 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALG 132 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCC
Confidence 122 2332 236899999999876543 3 6666666543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.7e-07 Score=96.28 Aligned_cols=142 Identities=23% Similarity=0.323 Sum_probs=96.2
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-HHcCCc----c---cCHHHhccccCEEEEeCCCC-hh
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-RATGVG----L---VSFEEAISTADFISLHMPLT-PA 259 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~g~~----~---~~l~ell~~aD~V~l~~Plt-~~ 259 (595)
+.++++.|+|.|.+|+.+++.++++|++|.++|++... +.. ...+.. . .++.+.++++|+|+.+++.+ ..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 67788999999999999999999999999999987532 222 223321 1 24678889999999998653 23
Q ss_pred ccccccHHHHhcCCCceEEEecc--CCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccC--CcEEEcCCCCCC
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA--RGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLH--ENVTVTPHLGAS 335 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a--rg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~--~nvilTPHi~~~ 335 (595)
+..+++++.++.||++++|||++ .|+.+. ...|..-+.|.+.. -.++.-||+-+.
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva~d~GG~~e---------------------~~~~t~~d~p~~~~~Gv~~~~v~nlP~~ 303 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVAIDQGGCVE---------------------TSRPTTHDQPTYAVHDVVHYCVANMPGA 303 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEecCCCCCcc---------------------CCcCCCCCCCEEEECCeEEEEeCCcccc
Confidence 56688999999999999999998 333321 11222223444433 234667777665
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 046427 336 TTEAQEGVAIEIAEAVIGAL 355 (595)
Q Consensus 336 t~ea~~~~~~~~~~~l~~~l 355 (595)
-. ...+....+++..|+
T Consensus 304 ~p---~~aS~~~~~~l~~~l 320 (370)
T TIGR00518 304 VP---KTSTYALTNATMPYV 320 (370)
T ss_pred cH---HHHHHHHHHHHHHHH
Confidence 42 233455566666665
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-05 Score=89.13 Aligned_cols=185 Identities=18% Similarity=0.227 Sum_probs=113.3
Q ss_pred CceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCCC--chHHHHHHHHHH--HHHHHch
Q 046427 93 LCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTAN--TIAAAEHGIALL--TAMARNI 168 (595)
Q Consensus 93 ~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~--~~~vAE~~l~l~--l~~~R~i 168 (595)
++|+|+- -. +.+.+.++.+.++--+|+...-.-|.=-++++.+++|.+..--... +++-.=.++.-| ++-.|-+
T Consensus 64 ~adiIlk-V~-~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Av 141 (511)
T TIGR00561 64 QSDIILK-VN-APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAI 141 (511)
T ss_pred cCCEEEE-eC-CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHH
Confidence 5787662 11 2344556666566677776665554444688889999887632211 110000111111 1122222
Q ss_pred HHHHHHHHcCcccccc--cceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc--C----
Q 046427 169 AQADASVKAGKWQRNK--YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV--S---- 239 (595)
Q Consensus 169 ~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~--~---- 239 (595)
..+.+.. |++.... ..| .+.+.++.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|.+.+ +
T Consensus 142 i~Aa~~l--gr~~~g~~taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~ 218 (511)
T TIGR00561 142 IEAAHEF--GRFFTGQITAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEE 218 (511)
T ss_pred HHHHHHh--hhhcCCceecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEecccccc
Confidence 2221111 2221100 011 3457899999999999999999999999999999876 4456666776541 1
Q ss_pred ----------------------HHHhccccCEEEEeC--CCChhccccccHHHHhcCCCceEEEeccC
Q 046427 240 ----------------------FEEAISTADFISLHM--PLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 240 ----------------------l~ell~~aD~V~l~~--Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
+.+.++++|+|+.++ |-.+ .-.++.++.++.||+|+++||++-
T Consensus 219 g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 219 GGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred ccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 445678899998887 3222 236789999999999999999984
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-06 Score=89.09 Aligned_cols=103 Identities=11% Similarity=0.140 Sum_probs=74.9
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCc-H-HH-HHHcCCccc-CHHHhccccCEEEEeCCCChhcccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQ-A-DR-ARATGVGLV-SFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~-~-~~-a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
+++|||||+|+||+++|+.+...| .+|++||++.. . +. ....|+... +..+++++||+|++|+| .......
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHH
Confidence 468999999999999999999777 78999998652 2 22 233476543 78889999999999999 4445555
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+ ......++++.+||++.-|- ..+.+.+.+..
T Consensus 82 l-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~~ 113 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQK 113 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCC
Confidence 5 33344578889999986543 55556665543
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-07 Score=109.89 Aligned_cols=179 Identities=15% Similarity=0.090 Sum_probs=129.1
Q ss_pred EEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHh-------cCCeeEEEEecCCCCCCCCCccccc
Q 046427 250 ISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALD-------SGIISQAALDVFTEEPPAKDSKLVL 322 (595)
Q Consensus 250 V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~-------~g~i~ga~lDv~~~EP~~~~~~L~~ 322 (595)
|++|+|. ..+..++.+ ....++++++++|++.-+---.++..+.|. .+|. .||-++.+.+ .++..||+
T Consensus 1 vila~Pv-~~~~~~~~~-~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e~~G~~--~a~~~Lf~ 75 (673)
T PRK11861 1 VLLAAPV-AQTGPLLAR-IAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRESSGVD--AALADLYV 75 (673)
T ss_pred CEEEcCH-HHHHHHHHH-HhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCcchhhh--hhChhHhC
Confidence 6899994 456666644 445689999999999766543344444443 2333 3778877777 67888999
Q ss_pred CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHH--------HH
Q 046427 323 HENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGL--------AV 392 (595)
Q Consensus 323 ~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l--------~~ 392 (595)
+.++|+||.-... .+ ..+.+.++++.-+.+.....|..|++.++.++ ||+.....+..+ ..
T Consensus 76 ~~~~il~p~~~~~-~~--------~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~~~~~~~~~~~ 146 (673)
T PRK11861 76 GRNVVLCALPENA-PD--------ALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQILGESDAELKF 146 (673)
T ss_pred CCeEEEecCCCCC-HH--------HHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHHhhccChhHHH
Confidence 9999999954322 22 23455556666667888889999999999999 888766665544 23
Q ss_pred HHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHH
Q 046427 393 QLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNAD 445 (595)
Q Consensus 393 qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~ 445 (595)
+|+++ +|+++++.+.+++. +|.++...|+..+...|+.+..+...+++++
T Consensus 147 ~~a~~--gfrd~tRia~~~p~-lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l 196 (673)
T PRK11861 147 SYAAG--GFRDFTRIAASSPE-MWRDVCLANRAALLDELDAYTAVLARLRAAI 196 (673)
T ss_pred Hhccc--chhcccccccCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777 89999999999998 9999999999977666766655444444444
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.34 E-value=8e-06 Score=91.34 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=82.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HH-----------HHHcCC-------------cc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DR-----------ARATGV-------------GL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g~-------------~~-~~l~ell~~ 246 (595)
++|||||+|.||+.||..+...|++|..||++... +. ..+.|. .. .++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 57999999999999999999999999999987532 21 122231 12 25655 569
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEE-eccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV-NVARGGVVDEEALVRALDSGIISQAALDVFTEEPP 314 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili-N~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~ 314 (595)
||+|+.|+|...+.+..+-.+.-..++++++|. |++.-.+ ..+.+++.. .-...+++-|.+-|.
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv 149 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV 149 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence 999999999888887776555555688888876 7766443 456666643 223467777765544
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=87.66 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCCEEEEECCCCcH------HHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCce
Q 046427 204 GTEVARRAKGLGMNVIAHDPYAQA------DRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGV 276 (595)
Q Consensus 204 G~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~ga 276 (595)
|+.+|++|...|+.|++||++... +...+.|+..+ +..+++++||+|++|+|..+.++.++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 889999999999999999986531 23566787665 68999999999999999888888887 45788899999
Q ss_pred EEEeccCCchhcHHHHHHHHhc
Q 046427 277 RIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 277 iliN~arg~~vd~~aL~~aL~~ 298 (595)
++||+++... +.++..|+.
T Consensus 111 IVID~STIsP---~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCTVSP---VVLYYSLEK 129 (341)
T ss_pred EEEECCCCCH---HHHHHHHHH
Confidence 9999977544 445554444
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.3e-08 Score=95.55 Aligned_cols=132 Identities=17% Similarity=0.277 Sum_probs=84.1
Q ss_pred EEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcC
Q 046427 194 TLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM 272 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~m 272 (595)
+++|||- |.+|+.+++.++..|+.|. +++||+|++|+|.. .+..++.+ +
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv~-~~~~~i~~-----~ 51 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPID-AALNYIES-----Y 51 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCHH-HHHHHHHH-----h
Confidence 7899988 9999999999999999985 36899999999953 45555533 3
Q ss_pred CCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe-cCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHH
Q 046427 273 KKGVRIVNVARGGVVDEEALVRALDSGIISQAALD-VFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAV 351 (595)
Q Consensus 273 k~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD-v~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l 351 (595)
. .+|+|++.-+-- +.++ .+.+.| .. -|+ |-.+...|+ .++++++.. ...++ .+.+
T Consensus 52 ~--~~v~Dv~SvK~~----i~~~--~~~~vg--~HPMfG--p~~a~~~lf--~~~iv~~~~--~~~~~--------~~~~ 107 (197)
T PRK06444 52 D--NNFVEISSVKWP----FKKY--SGKIVS--IHPLFG--PMSYNDGVH--RTVIFINDI--SRDNY--------LNEI 107 (197)
T ss_pred C--CeEEeccccCHH----HHHh--cCCEEe--cCCCCC--CCcCccccc--ceEEEECCC--CCHHH--------HHHH
Confidence 2 379999976541 2222 112211 11 022 223334455 466665432 22222 2355
Q ss_pred HHHHcCCCCCccccCCCCChhhhhccc--chh
Q 046427 352 IGALKGELAATAVNAPMVPAEVISELA--PFV 381 (595)
Q Consensus 352 ~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~ 381 (595)
.++++| .+.....|..|++.++.++ ||+
T Consensus 108 ~~l~~G--~~~~~~t~eeHD~~~A~ishLpH~ 137 (197)
T PRK06444 108 NEMFRG--YHFVEMTADEHDLLMSEIMVKPYI 137 (197)
T ss_pred HHHHcC--CEEEEeCHHHHHHHHHHHHHHHHH
Confidence 666664 5667788999999999888 776
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=87.84 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=76.1
Q ss_pred CCEEEEEeCChHHHHHHHHHhc--CCCEEE-EECCCCcH--HHHHHcCC-c-ccCHHHhccccCEEEEeCCCChhccccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKG--LGMNVI-AHDPYAQA--DRARATGV-G-LVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~--~G~~V~-~~d~~~~~--~~a~~~g~-~-~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
..+|||||+|+||+.+++.+.. .++++. +||+.... +.+...|. . +.+++++++++|+|++|+|... -..+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~-h~e~- 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV-LRAI- 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH-HHHH-
Confidence 4689999999999999999985 578876 57886532 23344453 2 3589999999999999999432 2222
Q ss_pred cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
. ...++.|.-++..+.|.+.+.++|.++.+++..
T Consensus 84 ~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~ 117 (271)
T PRK13302 84 V---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGG 117 (271)
T ss_pred H---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence 2 233566776777788888788888888776543
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-06 Score=88.67 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=69.4
Q ss_pred ceeeecCCEEEEEeCChH-HHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGKV-GTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||.|.+ |+.+|..|...|+.|..++... .++.+.+++||+|+.++| +.+++
T Consensus 152 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i 215 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVL 215 (285)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCcc
Confidence 356899999999999998 9999999999999999876421 268899999999999999 45678
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
+. +.+|+|+++||+|--.+
T Consensus 216 ~~---~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 216 TA---DMVKPGATVIDVGMNRD 234 (285)
T ss_pred CH---HHcCCCCEEEEcccccc
Confidence 87 44799999999986543
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.1e-06 Score=88.63 Aligned_cols=100 Identities=27% Similarity=0.319 Sum_probs=73.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc--------C------Cc-ccCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT--------G------VG-LVSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~--------g------~~-~~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|||+|.||..+|.+|...|++|.+|+++.. .+..... | +. ..++++++++||+|++++|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~ 84 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS 84 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence 5899999999999999999999999999999653 2222222 3 22 23788889999999999996
Q ss_pred ChhccccccHHHHhcCCCceEEEeccCC-chhc--HHHHHHHHhc
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVARG-GVVD--EEALVRALDS 298 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~arg-~~vd--~~aL~~aL~~ 298 (595)
.. + ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 85 ~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 85 KA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred HH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 52 3 4455778999999999997 3222 4455555544
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.6e-05 Score=80.00 Aligned_cols=105 Identities=19% Similarity=0.271 Sum_probs=71.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC---CEEEEECCCCc-HHHHHH-cCCcc-cCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG---MNVIAHDPYAQ-ADRARA-TGVGL-VSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G---~~V~~~d~~~~-~~~a~~-~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
++|+|||+|.||+.+|+.+...| .+|.+||++.. .+...+ .|+.. .+.++++++||+|++|+|. .....++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHHHH
Confidence 47999999999999999999888 78999999763 233333 36644 3678889999999999983 345555433
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeE
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQ 303 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~g 303 (595)
....+ +..||.+.-|- ..+.+.+.+..+ ++..
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~~~~~iv~ 114 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLGADLPVVR 114 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcCCCCcEEE
Confidence 22223 45677765543 566666666533 4433
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-05 Score=87.75 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=83.0
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH----------------cCCcc---cCHHHhccccCEEEEe
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA----------------TGVGL---VSFEEAISTADFISLH 253 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----------------~g~~~---~~l~ell~~aD~V~l~ 253 (595)
+|+|||+|.||..+|..+. .|++|++||.+... +...+ .+... .+..++.++||+|++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 6999999999999997766 59999999987633 22211 12222 1366788999999999
Q ss_pred CCCChhc-------cccccH-HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCC---ccccc
Q 046427 254 MPLTPAT-------SKMFND-EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD---SKLVL 322 (595)
Q Consensus 254 ~Plt~~t-------~~li~~-~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~---~~L~~ 322 (595)
+|...+- ..+... +.+..+++|.++|+.|.-.+=..+.+.+.+.+..+ +|.+|.+... +.++.
T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~~~ 154 (388)
T PRK15057 81 TPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDNLH 154 (388)
T ss_pred CCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccccC
Confidence 9954211 111111 22334799999999999887677778877765433 2466655333 33454
Q ss_pred CCcEE
Q 046427 323 HENVT 327 (595)
Q Consensus 323 ~~nvi 327 (595)
.|.++
T Consensus 155 p~rvv 159 (388)
T PRK15057 155 PSRIV 159 (388)
T ss_pred CCEEE
Confidence 55663
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.8e-06 Score=89.36 Aligned_cols=91 Identities=23% Similarity=0.265 Sum_probs=69.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc--------------CCcc-cCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT--------------GVGL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~--------------g~~~-~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|||+|.||..+|..+...|++|.+||+... .+...+. ++.. .++++++++||+|++|+|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 3799999999999999999999999999998752 2323332 2222 3678889999999999995
Q ss_pred ChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
..+..++. .....++++.++|+++.|-
T Consensus 82 -~~~~~v~~-~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 82 -QALREVLK-QLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred -HHHHHHHH-HHHhhcCCCCEEEEEeecc
Confidence 55666663 3445578899999997553
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.2e-06 Score=87.89 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=66.4
Q ss_pred eeeecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||+++||| .|.+|+.+|.+|...|+.|.+|+.... ++++++++||+|+++++... ++.
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------~l~e~~~~ADIVIsavg~~~----~v~ 216 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------DLPAVCRRADILVAAVGRPE----MVK 216 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----hcc
Confidence 4579999999999 999999999999999999999963221 47899999999999999543 444
Q ss_pred HHHHhcCCCceEEEeccCCc
Q 046427 266 DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~ 285 (595)
... +|+|+++||+|--.
T Consensus 217 ~~~---lk~GavVIDvGin~ 233 (296)
T PRK14188 217 GDW---IKPGATVIDVGINR 233 (296)
T ss_pred hhe---ecCCCEEEEcCCcc
Confidence 433 89999999998544
|
|
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=68.43 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=55.0
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecC-CCcEEEEEEcCCCCcHHHHHHHhcCCC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAP-QKQAVMTIGVDEEPSREVLKKIGETPA 586 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~-g~~al~vi~~d~~~~~e~l~~L~~~~~ 586 (595)
|.+.+..+|+||++++|+++|+++++||..+...+... .....+.+..+....+.++++|+++++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 45778899999999999999999999999999987665 445566677888888899999988764
|
ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=78.95 Aligned_cols=116 Identities=21% Similarity=0.289 Sum_probs=92.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-CHHHh---ccccCEEEEeCCCChhccccccHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-SFEEA---ISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-~l~el---l~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
+++|.||||+||..+++++...|.+|++||.++ ..+.+...|...+ +++++ |..--+|-+.+|-.+-|..+|+.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~- 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDD- 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHH-
Confidence 478999999999999999999999999999987 4566677776543 66665 56678999999988667777643
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCC
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTE 311 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~ 311 (595)
.-..|.+|=++||-+-.---|...-.+.|.+..| ..+||-..
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~GTS 121 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVGTS 121 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEeccCC
Confidence 4556899999999887666676667777888877 66787443
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=6e-06 Score=85.20 Aligned_cols=81 Identities=21% Similarity=0.278 Sum_probs=67.3
Q ss_pred ceeeecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||+++|||. |.+|+.+|.+|...|+.|..|.... .++.+.+++||+|+.+++.. +++
T Consensus 152 ~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~----~~v 215 (284)
T PRK14179 152 YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRG----HFV 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCcc----ccC
Confidence 356899999999999 9999999999999999999994321 16889999999999999953 345
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
.... +|+|+++||+|--.
T Consensus 216 ~~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 216 TKEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred CHHH---ccCCcEEEEeccee
Confidence 5543 79999999998544
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.6e-06 Score=84.12 Aligned_cols=100 Identities=14% Similarity=0.258 Sum_probs=72.4
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC---EEEEECCCCcH-HHH-HHc-CCcc-cCHHHhccccCEEEEeCCCChhccccccH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM---NVIAHDPYAQA-DRA-RAT-GVGL-VSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~~~~-~~a-~~~-g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
+|||||+|+||+++++.+...|. .+.+||++... +.. ... ++.. .+.++++++||+|++|+| ......++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 79999999999999999987774 35788886532 222 223 3544 378889999999999999 4545555543
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
+ .++++.++|.+. ++ +..+.|.+.+..+
T Consensus 81 --l-~~~~~~~vis~~-ag-~~~~~l~~~~~~~ 108 (258)
T PRK06476 81 --L-RFRPGQTVISVI-AA-TDRAALLEWIGHD 108 (258)
T ss_pred --h-ccCCCCEEEEEC-CC-CCHHHHHHHhCCC
Confidence 3 257888999987 33 5788888887654
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=77.18 Aligned_cols=90 Identities=19% Similarity=0.306 Sum_probs=73.4
Q ss_pred eeecCCEEEEEeCChH-HHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 188 VSLVGKTLAVMGFGKV-GTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 188 ~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
..+.||++.|||.|.+ |..+|+.|...|.+|...+++. .++.+.+++||+|+.+++.. +++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~----~ii~~ 103 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP----GLVKG 103 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC----ceecH
Confidence 3699999999999996 8889999999999999988752 25778999999999999842 26877
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
+. ++++.++||+|.-.-+| ..+|++.|
T Consensus 104 ~~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 104 DM---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred HH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 64 58899999999877666 45566644
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.1e-06 Score=84.19 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=73.1
Q ss_pred EEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCc-HHHHH-Hc-CCccc-CHHHhccccCEEEEeCCCChhcccccc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQ-ADRAR-AT-GVGLV-SFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~-~~~a~-~~-g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+|||||+|.||+.+++.+...| .+|.+||++.. .+... .. |+... +..+++.+||+|++|+| ......++.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl~ 80 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLLQ 80 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHHH
Confidence 6999999999999999998777 37999999752 22222 22 55443 78888999999999998 444555553
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHh
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALD 297 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~ 297 (595)
+....++++.++|+++-| +..+.|.+.+.
T Consensus 81 -~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 81 -KLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 333457788899999854 36777766665
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.1e-05 Score=85.33 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=112.4
Q ss_pred CceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCCC--chHHHHHHHHHHH--HHHHch
Q 046427 93 LCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTAN--TIAAAEHGIALLT--AMARNI 168 (595)
Q Consensus 93 ~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~--~~~vAE~~l~l~l--~~~R~i 168 (595)
++|+|+-- . +.+.+.++.++++--+|+...-..|.=-++++.++||.+..--... +++-.=.++.-|- +-.|-+
T Consensus 65 ~~diilkV-~-~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~Av 142 (509)
T PRK09424 65 QSDIILKV-N-APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRAV 142 (509)
T ss_pred cCCEEEEe-C-CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHHH
Confidence 57877621 1 2344455655556677777666555545788889999887622211 0100001111111 112222
Q ss_pred HHHHHHHHcCccccccc-ceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc--CH----
Q 046427 169 AQADASVKAGKWQRNKY-VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV--SF---- 240 (595)
Q Consensus 169 ~~~~~~~~~g~W~~~~~-~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~--~l---- 240 (595)
..+.+. -++...... ......+.+|.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|.+.+ +.
T Consensus 143 ~~aa~~--~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~ 220 (509)
T PRK09424 143 IEAAHE--FGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEG 220 (509)
T ss_pred HHHHHH--hcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEecccccc
Confidence 222111 122111000 0013568999999999999999999999999999999987 4567788887632 11
Q ss_pred ----------------------HHhccccCEEEEeCCCChh-ccccccHHHHhcCCCceEEEeccC
Q 046427 241 ----------------------EEAISTADFISLHMPLTPA-TSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 241 ----------------------~ell~~aD~V~l~~Plt~~-t~~li~~~~l~~mk~gailiN~ar 283 (595)
.+.++.+|+|+.|+..... .-.++.++.++.||+|.++++++=
T Consensus 221 ~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 221 GSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1113569999998864221 234556888999999999999983
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.2e-06 Score=83.15 Aligned_cols=87 Identities=26% Similarity=0.424 Sum_probs=70.0
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECC-CC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDP-YA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~-~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
-|.||+|+|||||.-|.+=|..|+..|.+|++=-+ .. +.+.|.+.|++..+.+|+.++||+|.+-+|... -..++.+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~-q~~vy~~ 93 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQ-QKEVYEK 93 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhh-HHHHHHH
Confidence 58999999999999999999999999999776433 33 467889999999999999999999999999543 3444444
Q ss_pred HHHhcCCCce
Q 046427 267 EAFFKMKKGV 276 (595)
Q Consensus 267 ~~l~~mk~ga 276 (595)
+.-..||+|+
T Consensus 94 ~I~p~Lk~G~ 103 (338)
T COG0059 94 EIAPNLKEGA 103 (338)
T ss_pred HhhhhhcCCc
Confidence 4445566665
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.5e-05 Score=77.98 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=62.3
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-HH-------cCC----cccCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-RA-------TGV----GLVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~-------~g~----~~~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+||| .|.||+.+|+.+...|.+|.+++++... +.. .. .|+ ...+..+.+++||+|++|+|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 3799997 9999999999999999999999886522 111 11 122 1236678899999999999943
Q ss_pred hccccccHHHHhcCCCceEEEeccCCc
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
....++. +.-..++ +.++|++.-|-
T Consensus 80 ~~~~~l~-~l~~~l~-~~vvI~~~ngi 104 (219)
T TIGR01915 80 HVLKTLE-SLRDELS-GKLVISPVVPL 104 (219)
T ss_pred HHHHHHH-HHHHhcc-CCEEEEeccCc
Confidence 3444442 2212243 57999997653
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.7e-05 Score=79.61 Aligned_cols=174 Identities=15% Similarity=0.174 Sum_probs=117.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-cCHHHhcc-ccCEEEEeCCCChhccccccHHHHh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAIS-TADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~-~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
++|||||+|++|+-+|+.+...|..|+.+|+..-.+.+...|... ..+.++++ +.|+|.+|+-- ..+..++-.--++
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypfq 131 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPFQ 131 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCch
Confidence 479999999999999999999999999999876555667777754 45777775 69999999863 3355555444567
Q ss_pred cCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHH
Q 046427 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEA 350 (595)
Q Consensus 271 ~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~ 350 (595)
++|.|++++++-.-+...-+++.+.|.+.--.=+.=-.|+++ ..++.+-.+|-|+.--.++ +. +...+-.|-
T Consensus 132 rlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPk--svnh~wqglpfVydkvRig-~~-----~~r~ercE~ 203 (480)
T KOG2380|consen 132 RLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPK--SVNHEWQGLPFVYDKVRIG-YA-----ASRPERCEF 203 (480)
T ss_pred hhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCC--cCCCccccCceEEEEeecc-cc-----ccchHHHHH
Confidence 799999999999988888888888887652111222234444 3455666677776655444 21 111333455
Q ss_pred HHHHHcCCCCCccccCCCCChhhhh
Q 046427 351 VIGALKGELAATAVNAPMVPAEVIS 375 (595)
Q Consensus 351 l~~~l~g~~~~~~vn~~~~~~~~~~ 375 (595)
+.+.+...+..-+......|+...+
T Consensus 204 fleIf~cegckmVemS~eeHDkiaA 228 (480)
T KOG2380|consen 204 FLEIFACEGCKMVEMSYEEHDKIAA 228 (480)
T ss_pred HHHHHHhcCCeEEEEEeeccccccc
Confidence 5566655555444444445554433
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.3e-05 Score=83.25 Aligned_cols=108 Identities=23% Similarity=0.309 Sum_probs=76.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-----------------cCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-----------------VSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-----------------~~l~ell~~aD~V~l~~P 255 (595)
++|+|||.|.||+.+|..+...|.+|.+||+....+...+.|... .+-.+.++.+|+|++|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~vk 82 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTVK 82 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEec
Confidence 479999999999999999999999999999854333333444321 122256789999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
. ++....+ ......++++.+++.+.- ++-..+.+.+.+...++..
T Consensus 83 ~-~~~~~~~-~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~~~~~~ 127 (341)
T PRK08229 83 S-AATADAA-AALAGHARPGAVVVSFQN-GVRNADVLRAALPGATVLA 127 (341)
T ss_pred C-cchHHHH-HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCCCcEEE
Confidence 5 4455555 334556788999998865 3445566777776655533
|
|
| >cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.5e-05 Score=63.86 Aligned_cols=69 Identities=14% Similarity=0.338 Sum_probs=57.2
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEF 590 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v 590 (595)
|+|.+...|+||+++.+++.|+++++||.++...+...++.+.+.+.++.. .-.+++++|+++++|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 578889999999999999999999999999998654356677778777753 334788999999998876
|
ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.7e-05 Score=79.58 Aligned_cols=107 Identities=14% Similarity=0.209 Sum_probs=74.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCcH--HHH-HHc-CCc-ccCHHHhccccCEEEEeCCCChhcccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQA--DRA-RAT-GVG-LVSFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~a-~~~-g~~-~~~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
.+|+|||+|+||+++++.+...| .+|.+|+++... ... ... ++. ..+..+++++||+|++|+| ......+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 47999999999999999998777 689999876422 111 222 233 2467888999999999999 4445544
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
+. +....++++..||.+.-| +..+.|.+.+...++.-
T Consensus 81 l~-~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~vvR 117 (277)
T PRK06928 81 LK-DCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQVSR 117 (277)
T ss_pred HH-HHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCEEE
Confidence 42 233346778899998776 56667777775434433
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.2e-05 Score=73.59 Aligned_cols=106 Identities=25% Similarity=0.421 Sum_probs=60.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEE-CCCC-cHHHHHH-cC-CcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAH-DPYA-QADRARA-TG-VGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~~-~~~~a~~-~g-~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
..+|||||.|++|..+++.|+..|++|.++ +++. +.+.+.. .+ ....+++++++++|++++++|... ...+. ++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~va-~~ 87 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAEVA-EQ 87 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHHHH-HH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHHHH-HH
Confidence 458999999999999999999999999886 4443 2222222 22 234578899999999999999653 44333 22
Q ss_pred HHhc--CCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 268 AFFK--MKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 268 ~l~~--mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.-.. .++|.+++-|| |. ...+-|..+-+.|-+
T Consensus 88 La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga~ 121 (127)
T PF10727_consen 88 LAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGAI 121 (127)
T ss_dssp HHCC--S-TT-EEEES--SS---GGGGHHHHHTT-E
T ss_pred HHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCCe
Confidence 2222 68999999996 22 233334444444443
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3e-05 Score=76.18 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=64.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH---HHHHHcC--CcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA---DRARATG--VGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~g--~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
++++|+|.|+||+.+|+++...|.+|+.-+++.+. ..+...+ ++..+.++..+.||+|++++|... ....+ ++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a-~~~v~-~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA-IPDVL-AE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH-HHhHH-HH
Confidence 58999999999999999999999999988655432 1223333 234578999999999999999644 33332 44
Q ss_pred HHhcCCCceEEEeccC
Q 046427 268 AFFKMKKGVRIVNVAR 283 (595)
Q Consensus 268 ~l~~mk~gailiN~ar 283 (595)
....+. |.++||+.-
T Consensus 80 l~~~~~-~KIvID~tn 94 (211)
T COG2085 80 LRDALG-GKIVIDATN 94 (211)
T ss_pred HHHHhC-CeEEEecCC
Confidence 444455 789998864
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.7e-05 Score=80.55 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=67.9
Q ss_pred eeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||.|. +|+.+|..|...|++|+.++.+. .++.+.+++||+|+.+++. .+++.
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~----p~~i~ 216 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGK----PGLVT 216 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCC----CcccC
Confidence 4579999999999998 99999999999999999987642 2578899999999999984 34677
Q ss_pred HHHHhcCCCceEEEeccCCc
Q 046427 266 DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~ 285 (595)
.+. +|+|+++||+|--.
T Consensus 217 ~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 217 KDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred HHH---cCCCcEEEEcCCCc
Confidence 754 69999999998543
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.1e-05 Score=73.31 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=69.2
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcC--------C------c-ccCHHHhccccCEEEEeCCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATG--------V------G-LVSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g--------~------~-~~~l~ell~~aD~V~l~~Plt 257 (595)
+|+|+|.|+.|.++|..+...|.+|..|.+... .+...+.+ + . ..++++++++||+|++++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 589999999999999999999999999998752 12111111 1 1 12799999999999999994
Q ss_pred hhccccccHHHHhcCCCceEEEeccCCc----hhc-HHHHHHHHhcCCe
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVARGG----VVD-EEALVRALDSGII 301 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~arg~----~vd-~~aL~~aL~~g~i 301 (595)
...+.++ ++....++++..+|++..|= ..- .+.+.+.+....+
T Consensus 80 ~~~~~~~-~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~ 127 (157)
T PF01210_consen 80 QAHREVL-EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRI 127 (157)
T ss_dssp GGHHHHH-HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGE
T ss_pred HHHHHHH-HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcce
Confidence 3344444 33445578899999998763 222 3334444555444
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.4e-05 Score=74.38 Aligned_cols=134 Identities=22% Similarity=0.246 Sum_probs=72.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC---------------------Ccc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG---------------------VGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g---------------------~~~-~~l~ell~~aD~V 250 (595)
++|+|||+|.+|..+|..+...|++|++||.+...-.....| ... .+..+.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 589999999999999999999999999999765321111111 112 2577889999999
Q ss_pred EEeCCCChhcc-cccc--------HHHHhcCCCceEEEeccCCchhcHHHHH-HHHhcCCeeEEEEe-cCCCCCCCCC--
Q 046427 251 SLHMPLTPATS-KMFN--------DEAFFKMKKGVRIVNVARGGVVDEEALV-RALDSGIISQAALD-VFTEEPPAKD-- 317 (595)
Q Consensus 251 ~l~~Plt~~t~-~li~--------~~~l~~mk~gailiN~arg~~vd~~aL~-~aL~~g~i~ga~lD-v~~~EP~~~~-- 317 (595)
++|+| ||... +-.+ +.....++++.++|.-|.-.+=..+.+. ..|++..-.+.-.+ +|.+|=+...
T Consensus 81 ~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a 159 (185)
T PF03721_consen 81 FICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRA 159 (185)
T ss_dssp EE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSH
T ss_pred EEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCc
Confidence 99999 44322 1111 2344568999999999987765555333 33432211000001 1556644333
Q ss_pred -cccccCCcEE
Q 046427 318 -SKLVLHENVT 327 (595)
Q Consensus 318 -~~L~~~~nvi 327 (595)
..+...|++|
T Consensus 160 ~~d~~~~~rvV 170 (185)
T PF03721_consen 160 IEDFRNPPRVV 170 (185)
T ss_dssp HHHHHSSSEEE
T ss_pred chhccCCCEEE
Confidence 3456678884
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=76.92 Aligned_cols=140 Identities=22% Similarity=0.274 Sum_probs=91.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH--------------------HHHcC-Cccc-CHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR--------------------ARATG-VGLV-SFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--------------------a~~~g-~~~~-~l~ell~~aD~V 250 (595)
.+|||||||-||..+|..+...|++|+|||-+...-. +.+.| .+.. +. +.++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~-~~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDP-EELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecCh-hhcccCCEE
Confidence 6899999999999999999999999999997642211 11122 1222 23 345599999
Q ss_pred EEeCCCChhccc-------ccc--HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC--CeeEEEEec---CCCCCCCC
Q 046427 251 SLHMPLTPATSK-------MFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG--IISQAALDV---FTEEPPAK 316 (595)
Q Consensus 251 ~l~~Plt~~t~~-------li~--~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g--~i~ga~lDv---~~~EP~~~ 316 (595)
++|+| ||-+.+ +.+ +..-..||+|.++|==|....=.++.++..+.+. .+ ..+-|. |.+|-..+
T Consensus 89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL-~~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL-KFGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC-cccceeeEeeCccccCC
Confidence 99999 664442 111 1234469999999988876665677777665443 12 122343 45554333
Q ss_pred Cc---ccccCCcEEEcCCCCCCcHHHH
Q 046427 317 DS---KLVLHENVTVTPHLGASTTEAQ 340 (595)
Q Consensus 317 ~~---~L~~~~nvilTPHi~~~t~ea~ 340 (595)
.+ .+.++|+| +||.|.++-
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~~ 188 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKCA 188 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHHH
Confidence 33 45567888 789888764
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.9e-05 Score=63.99 Aligned_cols=67 Identities=31% Similarity=0.468 Sum_probs=56.6
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcC-CCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGL-GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
..+.+++++|+|.|.+|+.+++.+..+ +.+|.+||+ |+++.|+|. .+.+.+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------di~i~~~~~----~~~~~~ 70 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------DILVTATPA----GVPVLE 70 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------CEEEEcCCC----CCCchH
Confidence 358899999999999999999999988 678999987 999999874 344555
Q ss_pred HHHhcCCCceEEEecc
Q 046427 267 EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 267 ~~l~~mk~gailiN~a 282 (595)
+....+++++++++++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 5677899999999975
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.2e-05 Score=84.54 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc-----CCcc-cCHHHhccc---cCEEEEeCCCChhccccccHHHHhcC
Q 046427 203 VGTEVARRAKGLGMNVIAHDPYAQA-DRARAT-----GVGL-VSFEEAIST---ADFISLHMPLTPATSKMFNDEAFFKM 272 (595)
Q Consensus 203 IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-----g~~~-~~l~ell~~---aD~V~l~~Plt~~t~~li~~~~l~~m 272 (595)
||+.+|++|...|++|.+||++... +...+. |+.. .+++++++. +|+|++|+|..+.+..++ ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 7999999999999999999998732 333332 3443 478888875 899999999988888888 4577889
Q ss_pred CCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCC
Q 046427 273 KKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP 313 (595)
Q Consensus 273 k~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP 313 (595)
.+|.++||++....-+...+.+.+++..+.....=|++.++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 99999999999888899999999988777444444566553
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.2e-05 Score=73.53 Aligned_cols=127 Identities=24% Similarity=0.302 Sum_probs=78.5
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-----------HHcC-------------Ccc-cCHHHhcccc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-----------RATG-------------VGL-VSFEEAISTA 247 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~~l~ell~~a 247 (595)
+|+|||.|.||+.+|..+...|++|..||++... +.+ .+.| +.+ .+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6899999999999999999999999999987531 110 1111 112 3688888 99
Q ss_pred CEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHh-cCCeeEEEEecCCCCCCCCCcccccCCcE
Q 046427 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALD-SGIISQAALDVFTEEPPAKDSKLVLHENV 326 (595)
Q Consensus 248 D~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~-~g~i~ga~lDv~~~EP~~~~~~L~~~~nv 326 (595)
|+|+=++|..-+.+.-+-++.-+.++++++|...+.+ +....|...+. ..++ .++.-|. |+ ...||.+ +
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~p~R~--ig~Hf~~--P~-~~~~lVE---v 149 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSRPERF--IGMHFFN--PP-HLMPLVE---V 149 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSSTGGGE--EEEEE-S--ST-TT--EEE---E
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCcCceE--EEEeccc--cc-ccCceEE---E
Confidence 9999999987777766666666677888887766443 35555666653 2355 5666664 32 2356664 5
Q ss_pred EEcCC
Q 046427 327 TVTPH 331 (595)
Q Consensus 327 ilTPH 331 (595)
+-.|+
T Consensus 150 v~~~~ 154 (180)
T PF02737_consen 150 VPGPK 154 (180)
T ss_dssp EE-TT
T ss_pred eCCCC
Confidence 56665
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.6e-05 Score=72.03 Aligned_cols=93 Identities=23% Similarity=0.322 Sum_probs=68.7
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCCcH--HHHHHc---CCccc---CHHHhccccCEEEEeCCCChh
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYAQA--DRARAT---GVGLV---SFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~--~~a~~~---g~~~~---~l~ell~~aD~V~l~~Plt~~ 259 (595)
.++|+++.|||.|.+|+.++..|...|++ |..++|+... +.+... .+... ++.+.+.++|+|+.|+|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~- 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM- 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC-
Confidence 68999999999999999999999999986 9999987632 223333 22233 46667899999999998543
Q ss_pred ccccccHHHHhcCCCce-EEEeccCC
Q 046427 260 TSKMFNDEAFFKMKKGV-RIVNVARG 284 (595)
Q Consensus 260 t~~li~~~~l~~mk~ga-iliN~arg 284 (595)
..+.++.+...++.. +++|.+.-
T Consensus 88 --~~i~~~~~~~~~~~~~~v~Dla~P 111 (135)
T PF01488_consen 88 --PIITEEMLKKASKKLRLVIDLAVP 111 (135)
T ss_dssp --TSSTHHHHTTTCHHCSEEEES-SS
T ss_pred --cccCHHHHHHHHhhhhceeccccC
Confidence 378888887665443 88888743
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.4e-05 Score=79.67 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCCCEEEEECCCCc------HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCce
Q 046427 204 GTEVARRAKGLGMNVIAHDPYAQ------ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGV 276 (595)
Q Consensus 204 G~~vA~~l~~~G~~V~~~d~~~~------~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~ga 276 (595)
|..+|.++...|++|++||++.. .+...+.|+... +..+++++||+|++|+|....++.++. .....++++.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~-~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK-NILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH-HHHhhCCCCC
Confidence 78999999999999999998753 123445677644 788899999999999996554677773 5667789999
Q ss_pred EEEeccCCchhcH-HHHHHHHh
Q 046427 277 RIVNVARGGVVDE-EALVRALD 297 (595)
Q Consensus 277 iliN~arg~~vd~-~aL~~aL~ 297 (595)
++||++.++.... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999887655 56666664
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.8e-06 Score=80.66 Aligned_cols=127 Identities=15% Similarity=0.202 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHH--hcCCCEEEE-ECCCCcHHHH
Q 046427 154 AEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRA--KGLGMNVIA-HDPYAQADRA 230 (595)
Q Consensus 154 AE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l--~~~G~~V~~-~d~~~~~~~a 230 (595)
++|.+..++...|++. .|. ..++++|||+|.+|+.+++.+ ...|+++++ +|+++.....
T Consensus 64 ~gy~v~~l~~~~~~~l---------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~ 125 (213)
T PRK05472 64 VGYNVEELLEFIEKIL---------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGT 125 (213)
T ss_pred CCeeHHHHHHHHHHHh---------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCC
Confidence 4578888888888765 222 235899999999999999863 367899887 5664321110
Q ss_pred HHcCCc---ccCHHHhccc--cCEEEEeCCCChh---ccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 231 RATGVG---LVSFEEAIST--ADFISLHMPLTPA---TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 231 ~~~g~~---~~~l~ell~~--aD~V~l~~Plt~~---t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.-.|+. ..++.+++++ .|.+++|+|.... ...+.......-|....+.+|+.+|-+|+.++|..+|..
T Consensus 126 ~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 126 KIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred EeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 111221 2357788765 9999999997653 222222222344666778899999999999988888653
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.8e-05 Score=71.74 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=59.4
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+. +|+.++..|...|+.|..++.+. .++++.+++||+|+.+++. .++|
T Consensus 30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~----~~~i 93 (160)
T PF02882_consen 30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGK----PNLI 93 (160)
T ss_dssp TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSS----TT-B
T ss_pred cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeecc----cccc
Confidence 35679999999999985 99999999999999999987643 2578899999999999973 4567
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
..+ .+|+|+++||++.-..
T Consensus 94 ~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 94 KAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp -GG---GS-TTEEEEE--CEEE
T ss_pred ccc---cccCCcEEEecCCccc
Confidence 655 3699999999987654
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.2e-05 Score=77.00 Aligned_cols=103 Identities=14% Similarity=0.233 Sum_probs=67.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--CCEEE-EECCCCcH--HHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--GMNVI-AHDPYAQA--DRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
.+|||||+|.||+.+++.+... ++++. +||++... ..+...+.. +.++++++.++|+|++|+|. .....+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~--- 77 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV-NAVEEV--- 77 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh-HHHHHH---
Confidence 3799999999999999998864 57744 58887632 222334444 34799999999999999983 222222
Q ss_pred HHHhcCCCceEEEeccCCchhcH---HHHHHHHhcCC
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDE---EALVRALDSGI 300 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~---~aL~~aL~~g~ 300 (595)
....++.|.-++..+.|.+.|. +.|.++.+++.
T Consensus 78 -~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 78 -VPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred -HHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 1223455666666777777653 35666555543
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=74.30 Aligned_cols=104 Identities=17% Similarity=0.281 Sum_probs=69.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCC---CE-EEEECCC-Cc-HH-HHHHcCCcc-cCHHHhccccCEEEEeCCCChhccc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLG---MN-VIAHDPY-AQ-AD-RARATGVGL-VSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G---~~-V~~~d~~-~~-~~-~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
..++|||||.|++|+.+++.+...| .+ ++++++. .. .+ .....++.. .+++++++++|+|++|+|. ...+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHH
Confidence 3578999999999999999987655 33 7778764 22 22 223356543 4788999999999999994 33444
Q ss_pred cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
++.. .-..++ +.+||.++-| ++.+.|.+.+..+
T Consensus 82 v~~~-l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LLAE-LSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HHHH-HHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 4422 112234 5688888765 3555677777654
|
|
| >cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0001 Score=59.14 Aligned_cols=68 Identities=12% Similarity=0.275 Sum_probs=57.1
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC-CcHHHHHHHhcCCCcceEEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE-PSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~-~~~e~l~~L~~~~~v~~v~~ 592 (595)
|.+..+|+||+++++.+.|.++++||.++...... ++.+.+.+.++.. ...+++++|++.++|..++.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER-EGKARIYMELEGVGDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC-CCeEEEEEEEeccccHHHHHHHHhCCCCeEEEEe
Confidence 56778999999999999999999999999886443 4567777888876 55599999999999988765
|
a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.1e-05 Score=82.02 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=68.9
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCcH--HHHHHcCCcc---cCHHHhccccCEEEEeCCCChhccc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQA--DRARATGVGL---VSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g~~~---~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.+.|++++|+|.|.||+.+++.++..| .+|+++|+.... ..+...|... .++.+.+.++|+|+.|++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 478999999999999999999999999 789999987632 2444555432 2567888999999999873 456
Q ss_pred cccHHHHhcCC----CceEEEeccC
Q 046427 263 MFNDEAFFKMK----KGVRIVNVAR 283 (595)
Q Consensus 263 li~~~~l~~mk----~gailiN~ar 283 (595)
+++.+.+..+. ...+++|.+.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 77877776542 2347777753
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.2e-05 Score=77.99 Aligned_cols=92 Identities=24% Similarity=0.293 Sum_probs=66.0
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCc--HHHHHHcCCccc---CHHHhccccCEEEEeCCCChhcccc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQ--ADRARATGVGLV---SFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~--~~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
+.|++|+|||.|.||+.+++.++..| .+|+++|+... .+.+.+.|.... ++.+.+.++|+|+.|+|... ...+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~-~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH-YAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc-hHHH
Confidence 68999999999999999999999866 67999998763 244566665433 35677889999999999543 3222
Q ss_pred ccHHHHhcC-CCceEEEeccC
Q 046427 264 FNDEAFFKM-KKGVRIVNVAR 283 (595)
Q Consensus 264 i~~~~l~~m-k~gailiN~ar 283 (595)
+ +..++.. +++.+++|++.
T Consensus 255 ~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCC
Confidence 2 2223222 35678888874
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=71.38 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=69.9
Q ss_pred cccccccceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHH--HHcCCcc---cC----HHHhccccC
Q 046427 179 KWQRNKYVGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRA--RATGVGL---VS----FEEAISTAD 248 (595)
Q Consensus 179 ~W~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g~~~---~~----l~ell~~aD 248 (595)
-|++....+.++.||++.|||-+. +|+.+|..|...|+.|..+|.+.-.... ....-.. .+ +.+.+++||
T Consensus 49 i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~AD 128 (197)
T cd01079 49 IYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSD 128 (197)
T ss_pred CcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCC
Confidence 344444457789999999999975 7999999999999999999743211000 0000000 12 789999999
Q ss_pred EEEEeCCCChhcccc-ccHHHHhcCCCceEEEeccC
Q 046427 249 FISLHMPLTPATSKM-FNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 249 ~V~l~~Plt~~t~~l-i~~~~l~~mk~gailiN~ar 283 (595)
+|+.+++. .++ +..+. .|+|+++||+|-
T Consensus 129 IVIsAvG~----~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 129 VVITGVPS----PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred EEEEccCC----CCCccCHHH---cCCCcEEEEcCC
Confidence 99999984 345 77665 489999999983
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=73.39 Aligned_cols=104 Identities=23% Similarity=0.316 Sum_probs=78.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCc-H-HHHHHcCCc-ccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQ-A-DRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~-~-~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
++|||||+|+||++++..+...| .+|++.+|+.. . ..+.+.|+. ..+.+++..++|+|+|++. |+..
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~~---- 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQDL---- 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHhH----
Confidence 57999999999999999999888 68999999873 2 356677776 3467899999999999995 3221
Q ss_pred HHHHhcCC---CceEEEeccCCchhcHHHHHHHHhcCCeeEE
Q 046427 266 DEAFFKMK---KGVRIVNVARGGVVDEEALVRALDSGIISQA 304 (595)
Q Consensus 266 ~~~l~~mk---~gailiN~arg~~vd~~aL~~aL~~g~i~ga 304 (595)
.+.+..++ ++.+||.++-|- ..+.|.+++.+-++..+
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l~~~~vvR~ 115 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAGV--SIETLERLLGGLRVVRV 115 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHcCCCceEEe
Confidence 33445555 688999998764 67777787764455443
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00016 Score=75.38 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=74.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc--------------ccCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG--------------LVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~--------------~~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+|+|.|.||..+|..|...|.+|..|++....+...+.|+. ..+.+++.+.+|+|++|+|. .
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-Y 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-c
Confidence 36999999999999999999999999999982223333343431 12456667899999999994 3
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
++...+ +.....++++.+||.+.-| +-..+.+.+.+...++.+
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~ 122 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLG 122 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEE
Confidence 444444 2233345678888877554 445677777777666543
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=77.39 Aligned_cols=85 Identities=18% Similarity=0.243 Sum_probs=64.0
Q ss_pred EEEEeCChHHHHHHHHHhc-CCCEEEEE-CCCCcH--HHHHHcCCcc-------------------cCHHHhccccCEEE
Q 046427 195 LAVMGFGKVGTEVARRAKG-LGMNVIAH-DPYAQA--DRARATGVGL-------------------VSFEEAISTADFIS 251 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~--~~a~~~g~~~-------------------~~l~ell~~aD~V~ 251 (595)
|||+|||+||+.+++.+.. -++++++. |..+.. ..+..+|+.. -++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999774 46898875 432221 2233333211 15899999999999
Q ss_pred EeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 252 LHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 252 l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.|+| .+.+..+++.+.+|+++++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 9977 577889999999999999998754
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.6e-05 Score=81.13 Aligned_cols=91 Identities=20% Similarity=0.320 Sum_probs=66.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcCCccc---CHHHhccccCEEEEeCCCChhccc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATGVGLV---SFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.+.|++++|+|.|.||+.+++.++..|. +|+++++.... ..+...|.... ++.+.+.++|+|+.|+|. ...
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s---~~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA---PHP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC---CCc
Confidence 3789999999999999999999999997 79999987632 24455554332 456778899999999873 344
Q ss_pred cccHHHHhcC-----CCceEEEecc
Q 046427 263 MFNDEAFFKM-----KKGVRIVNVA 282 (595)
Q Consensus 263 li~~~~l~~m-----k~gailiN~a 282 (595)
++..+.++.+ +.+.+++|.+
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeC
Confidence 5666666543 2345666664
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0001 Score=70.52 Aligned_cols=94 Identities=27% Similarity=0.385 Sum_probs=68.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCc---c-------------------c-----CH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVG---L-------------------V-----SF 240 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~---~-------------------~-----~l 240 (595)
.+...++.|+|.|+.|+.-++.++++|++|..+|.+... ......+.. . . .|
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 577789999999999999999999999999999987632 223333321 1 1 37
Q ss_pred HHhccccCEEEEeCCC-ChhccccccHHHHhcCCCceEEEecc
Q 046427 241 EEAISTADFISLHMPL-TPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 241 ~ell~~aD~V~l~~Pl-t~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.+.++.+|+|+.++-. ....-.++.++.++.||++.+|+|++
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 7889999999864432 44567889999999999999999996
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00024 Score=66.06 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=67.8
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|+|-+ .+|+.+|..|...|+.|..++.+. .++++.+++||+|+.+++.. +++
T Consensus 22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------~~l~~~v~~ADIVvsAtg~~----~~i 85 (140)
T cd05212 22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------IQLQSKVHDADVVVVGSPKP----EKV 85 (140)
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCCC----Ccc
Confidence 3668999999999985 689999999999999999988542 16788999999999999853 567
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
+.+. +|+|++++|++...
T Consensus 86 ~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CHHH---cCCCCEEEEcCCCc
Confidence 7655 69999999998654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
|---|
Probab=97.69 E-value=9.4e-05 Score=57.25 Aligned_cols=46 Identities=13% Similarity=0.330 Sum_probs=42.0
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE 571 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~ 571 (595)
-+..+|+||.++++++.|+++++||.+|.+++.. ++.+++.+.+|.
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~ 47 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD 47 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence 3578899999999999999999999999998775 789999999998
|
Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00033 Score=72.85 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=73.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcc------------cCHHHhccccCEEEEeCCCChh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGL------------VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~------------~~l~ell~~aD~V~l~~Plt~~ 259 (595)
++|+|||.|.||+.+|..|...|.+|..++++. ..+...+.|+.. .+..++ +.+|+|++++|. .+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence 369999999999999999999999999999854 233333445421 245555 899999999994 34
Q ss_pred ccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
+..++. .....+.+++.||.+.-| +-.++.+.+.+....+.+
T Consensus 79 ~~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 79 LPAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred HHHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 555443 233346677788877766 333566666676656544
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=73.95 Aligned_cols=121 Identities=19% Similarity=0.215 Sum_probs=76.9
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccH
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
..+|||||+|+||+++++.+...+ -+++++|++... .++.. .+..+++.+||+|++|+| ...+..++..
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~~ 76 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLLE 76 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 358999999999999999998665 359999886421 23322 367788899999999998 5556666653
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCCCCCCCCCcccccCCcEEEcCC
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFTEEPPAKDSKLVLHENVTVTPH 331 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH 331 (595)
....++++.+|..++- +..+.+.+.+... ++. .+-.+- .-++..-.++++|.
T Consensus 77 -i~~~l~~~~iIS~~aG---i~~~~l~~~~~~~~~vv----r~mPn~-----p~~~g~g~t~i~~~ 129 (260)
T PTZ00431 77 -IKPYLGSKLLISICGG---LNLKTLEEMVGVEAKIV----RVMPNT-----PSLVGQGSLVFCAN 129 (260)
T ss_pred -HHhhccCCEEEEEeCC---ccHHHHHHHcCCCCeEE----EECCCc-----hhHhcceeEEEEeC
Confidence 2234556666555543 2455555555433 232 122222 23555667778875
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00089 Score=67.36 Aligned_cols=130 Identities=22% Similarity=0.181 Sum_probs=89.9
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCC---EEEEECCC----CcH---------HHHHHcCCc-c-cCHHHhccccC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGM---NVIAHDPY----AQA---------DRARATGVG-L-VSFEEAISTAD 248 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~----~~~---------~~a~~~g~~-~-~~l~ell~~aD 248 (595)
+..+.++++.|+|.|.+|+.+|..+...|+ +|+.+|++ ... ..++..+.. . .++.+.++++|
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 346888999999999999999999999997 49999987 221 122332211 1 36878889999
Q ss_pred EEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCC-eeEEEEecCCCCCCCCCcccccCCcEE
Q 046427 249 FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGI-ISQAALDVFTEEPPAKDSKLVLHENVT 327 (595)
Q Consensus 249 ~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~-i~ga~lDv~~~EP~~~~~~L~~~~nvi 327 (595)
+|+-++| .++++.+.++.|+++.++...+. .. .|.-+.++.+.|. +..-|. +.+ ..+.-|++
T Consensus 100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsn-P~-~e~~~~~A~~~ga~i~a~G~-----~~~-----~~Q~nn~~ 162 (226)
T cd05311 100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALAN-PV-PEIWPEEAKEAGADIVATGR-----SDF-----PNQVNNVL 162 (226)
T ss_pred EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCC-CC-CcCCHHHHHHcCCcEEEeCC-----CCC-----ccccceee
Confidence 9999886 46788888999999999988883 32 3444444444454 444442 211 22456888
Q ss_pred EcCCCC
Q 046427 328 VTPHLG 333 (595)
Q Consensus 328 lTPHi~ 333 (595)
+-|-++
T Consensus 163 ~fPg~~ 168 (226)
T cd05311 163 GFPGIF 168 (226)
T ss_pred ecchhh
Confidence 888766
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=75.08 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=66.1
Q ss_pred eeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||-|. +|+.+|..|...|..|..++.+. .++.+.+++||+|+.+++. .+++.
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvi~avG~----p~~v~ 217 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------KNLRHHVRNADLLVVAVGK----PGFIP 217 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------CCHHHHHhhCCEEEEcCCC----ccccc
Confidence 5689999999999999 99999999999999999987542 2588999999999999963 23566
Q ss_pred HHHHhcCCCceEEEeccCC
Q 046427 266 DEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg 284 (595)
.+ .+|+|+++||+|--
T Consensus 218 ~~---~vk~gavVIDvGin 233 (285)
T PRK10792 218 GE---WIKPGAIVIDVGIN 233 (285)
T ss_pred HH---HcCCCcEEEEcccc
Confidence 54 46999999999843
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00013 Score=75.36 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=67.7
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-| .+|+.+|..|...|+.|..++.+. .++.+.+++||+|+.+++ ..+++
T Consensus 151 ~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------~~l~~~~~~ADIvV~AvG----~p~~i 214 (285)
T PRK14191 151 YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------KDLSFYTQNADIVCVGVG----KPDLI 214 (285)
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHhCCEEEEecC----CCCcC
Confidence 3568999999999999 999999999999999999986432 146789999999999997 34567
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+.+ |+|+++||+|-..
T Consensus 215 ~~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 215 KASMV---KKGAVVVDIGINR 232 (285)
T ss_pred CHHHc---CCCcEEEEeeccc
Confidence 77654 9999999998544
|
|
| >PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00014 Score=60.58 Aligned_cols=68 Identities=18% Similarity=0.394 Sum_probs=50.7
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCC---cHHHHHHHhcCCCcceEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEP---SREVLKKIGETPAIEEFV 591 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~---~~e~l~~L~~~~~v~~v~ 591 (595)
|-+...|+||+++.|++.++++++||.+++......++.+.+.+.++-.- =..++++|+++++|.+|+
T Consensus 9 l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 9 LRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 45678999999999999999999999999997654455666555444322 228999999999998875
|
|
| >PRK08577 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0006 Score=63.07 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=60.4
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcE--EEEEEcCCC-C-cHHHHHHHhcCCCcceEEEEeC
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQA--VMTIGVDEE-P-SREVLKKIGETPAIEEFVFLKL 595 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~a--l~vi~~d~~-~-~~e~l~~L~~~~~v~~v~~i~~ 595 (595)
.+.|-+...|+||+++.|++.|+++++||.+++......++.+ .+.+++++. . -.+++++|+++++|.+|+++++
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~~~ 134 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIRQI 134 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEEEc
Confidence 4567788999999999999999999999999998655445544 444666664 2 3489999999999999998864
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=82.14 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=67.6
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHc-CC--cc---cCHHHhccccCEEEEeCCCChh
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARAT-GV--GL---VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~-g~--~~---~~l~ell~~aD~V~l~~Plt~~ 259 (595)
.+.+++|+|||.|.||+.+++.|...|. +|++++++... ..+... +. .. .++.+.+.+||+|+.|+| .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 4789999999999999999999999997 79999987632 222333 22 11 256778999999999987 3
Q ss_pred ccccccHHHHhcCCCc-------eEEEecc
Q 046427 260 TSKMFNDEAFFKMKKG-------VRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~g-------ailiN~a 282 (595)
...++.++.++.++++ .++||.+
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 4567888888776432 3666665
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=75.14 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=68.4
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|+|.+ ..|+.+|..+..+|..|..++.+. .++.+.+++||+|+.+++.. +++
T Consensus 146 ~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv 209 (279)
T PRK14178 146 YKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFI 209 (279)
T ss_pred cCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----ccc
Confidence 3568999999999999 999999999999999999887532 25889999999999999732 678
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
.++.+ |+|+++||+|-..
T Consensus 210 ~~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 210 TPDMV---KPGATVIDVGINQ 227 (279)
T ss_pred CHHHc---CCCcEEEEeeccc
Confidence 87764 9999999998543
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=73.99 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=66.8
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||.|. +|+.+|..|...|+.|..++... -++.+..++||+|+.++.. .+++
T Consensus 158 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvv~AvG~----p~~i 221 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------DDLKKYTLDADILVVATGV----KHLI 221 (287)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------CCHHHHHhhCCEEEEccCC----cccc
Confidence 35689999999999999 99999999999999999987432 2578899999999998863 3467
Q ss_pred cHHHHhcCCCceEEEeccCC
Q 046427 265 NDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg 284 (595)
..+ .+|+|+++||+|--
T Consensus 222 ~~~---~vk~gavVIDvGin 238 (287)
T PRK14176 222 KAD---MVKEGAVIFDVGIT 238 (287)
T ss_pred CHH---HcCCCcEEEEeccc
Confidence 665 46999999999853
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0019 Score=71.87 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=82.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--CCEEEEECCCCcHHHHHHcC--------------------Ccc-cCHHHhccccCE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--GMNVIAHDPYAQADRARATG--------------------VGL-VSFEEAISTADF 249 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~g--------------------~~~-~~l~ell~~aD~ 249 (595)
++|+|||+|.+|..+|..+... |++|++||.+...-.....| ... .++++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999855 68999999764221111111 111 246678899999
Q ss_pred EEEeCCCChhcc------------cccc--HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe-cCCCCCC
Q 046427 250 ISLHMPLTPATS------------KMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD-VFTEEPP 314 (595)
Q Consensus 250 V~l~~Plt~~t~------------~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD-v~~~EP~ 314 (595)
+++|+| ||... ++.. +..-..++++.++|.-|...+=..+.+.+.+.+.. .|.-.. +|.+|=+
T Consensus 82 i~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl 159 (473)
T PLN02353 82 VFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFL 159 (473)
T ss_pred EEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCcc
Confidence 999997 44211 1211 22345679999999988766545566666665421 011111 2556654
Q ss_pred CCC---cccccCCcEE
Q 046427 315 AKD---SKLVLHENVT 327 (595)
Q Consensus 315 ~~~---~~L~~~~nvi 327 (595)
... +.++..|++|
T Consensus 160 ~~G~a~~d~~~p~riV 175 (473)
T PLN02353 160 AEGTAIEDLFKPDRVL 175 (473)
T ss_pred CCCCcccccCCCCEEE
Confidence 333 3455667775
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0011 Score=68.55 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=66.8
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||-+ .+|+.+|..|...|..|..+..+. -++.+..++||+|+.+++. .+++.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------------~nl~~~~~~ADIvI~AvGk----~~~i~ 215 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------------ADLAGEVGRADILVAAIGK----AELVK 215 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence 567999999999996 579999999999999999986532 2578899999999999983 46787
Q ss_pred HHHHhcCCCceEEEeccCCc
Q 046427 266 DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~ 285 (595)
.+. .|+|+++||+|--.
T Consensus 216 ~~~---ik~gaiVIDvGin~ 232 (282)
T PRK14182 216 GAW---VKEGAVVIDVGMNR 232 (282)
T ss_pred HHH---cCCCCEEEEeecee
Confidence 766 48999999998544
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00031 Score=72.95 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=66.0
Q ss_pred eeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|+|.|. .|+.+|..|...|.+|..+++.. .++.+.+++||+|+.+++ .+ +++.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG-~~---~~v~ 217 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVG-KP---ELIK 217 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccC-CC---CcCC
Confidence 5689999999999998 99999999999999999988621 147778899999999997 33 2576
Q ss_pred HHHHhcCCCceEEEeccCCc
Q 046427 266 DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~ 285 (595)
.+. +|+|++++|++-..
T Consensus 218 ~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 218 KDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred HHH---cCCCCEEEEEEEee
Confidence 644 69999999998543
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00098 Score=70.84 Aligned_cols=98 Identities=22% Similarity=0.355 Sum_probs=71.2
Q ss_pred ceeeecCCEEEEEeC-ChHHHHHHHHHh-cCC-CEEEEECCCCcH--HHHHHcC-CcccCHHHhccccCEEEEeCCCChh
Q 046427 186 VGVSLVGKTLAVMGF-GKVGTEVARRAK-GLG-MNVIAHDPYAQA--DRARATG-VGLVSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 186 ~g~~l~gktvGIIGl-G~IG~~vA~~l~-~~G-~~V~~~d~~~~~--~~a~~~g-~~~~~l~ell~~aD~V~l~~Plt~~ 259 (595)
.+..+.||++.|+|. |.||+.+++.+. ..| .+++.+++.... ..+.+.+ ....++++.+.++|+|+.++-.
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~--- 225 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM--- 225 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC---
Confidence 355799999999999 899999999997 456 488899886421 1222332 2344788999999999877643
Q ss_pred ccc-cccHHHHhcCCCceEEEeccCCchhcH
Q 046427 260 TSK-MFNDEAFFKMKKGVRIVNVARGGVVDE 289 (595)
Q Consensus 260 t~~-li~~~~l~~mk~gailiN~arg~~vd~ 289 (595)
... .++.+. ++++++++|.|+-.=||.
T Consensus 226 ~~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 226 PKGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 234 377754 489999999998765553
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.03 Score=61.70 Aligned_cols=67 Identities=15% Similarity=0.252 Sum_probs=46.3
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcH---HHHHHHhcCCCcce
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSR---EVLKKIGETPAIEE 589 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~---e~l~~L~~~~~v~~ 589 (595)
+.|-+...|+||++++|+.+|++++|||..+..... .++.+-+++-++..-.. +++++|.+++.|..
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~ 418 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHETSEAALRAALAAIEALDVVLG 418 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEeCCHHHHHHHHHHHhcCccccc
Confidence 556666789999999999999999999998866433 22344444444432222 66677777777654
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00032 Score=72.35 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=67.1
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. -++.+..++||+|+.++.. .+++
T Consensus 151 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T------------~~l~~~~~~ADIvV~AvGk----p~~i 214 (281)
T PRK14183 151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT------------KDLKAHTKKADIVIVGVGK----PNLI 214 (281)
T ss_pred cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCc----cccc
Confidence 3568999999999999 899999999999999999876432 1578899999999999973 4567
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+. .|+|+++||+|--.
T Consensus 215 ~~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 215 TEDM---VKEGAIVIDIGINR 232 (281)
T ss_pred CHHH---cCCCcEEEEeeccc
Confidence 7765 48999999998433
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0021 Score=67.67 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=74.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc--------------cCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL--------------VSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------------~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+|||.|.||..+|.+|+..|.+|..+.+.. .+.....|... .+..+.+..+|+|++|+|..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~- 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT- 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-
Confidence 589999999999999999999999999988764 23333333211 11223467899999999954
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEE
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAA 305 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~ 305 (595)
++...+. .....++++..++...-| +-.++.+.+.+...++.++.
T Consensus 84 ~~~~~~~-~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 84 ANALLAP-LIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred ChHhHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 3444332 233346777788877554 44677788888777776553
|
|
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00051 Score=57.85 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=59.3
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC-CC--CcHHHHHHHhcCCCcceEEEEe
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD-EE--PSREVLKKIGETPAIEEFVFLK 594 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d-~~--~~~e~l~~L~~~~~v~~v~~i~ 594 (595)
+++-+...|+||++++|+.+|...|+||..+.++..+..+-.=|.|.++ .. .=+++.++|.++..|.+|.-++
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~ 78 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYD 78 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEee
Confidence 5677788899999999999999999999999999887777776666664 32 2347888888898888887554
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0016 Score=66.74 Aligned_cols=82 Identities=20% Similarity=0.322 Sum_probs=67.8
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.+|+||++.|||-++ +|+.+|..|...++.|.++..+. -++.+..++||+|+.++- -.+++
T Consensus 150 ~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------~~l~~~~k~ADIvv~AvG----~p~~i 213 (283)
T COG0190 150 YGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------KDLASITKNADIVVVAVG----KPHFI 213 (283)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------CCHHHHhhhCCEEEEecC----Ccccc
Confidence 35689999999999987 59999999999999999987543 257889999999999996 35677
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
..+. .|+|+++||++--.+
T Consensus 214 ~~d~---vk~gavVIDVGinrv 232 (283)
T COG0190 214 KADM---VKPGAVVIDVGINRV 232 (283)
T ss_pred cccc---ccCCCEEEecCCccc
Confidence 6654 599999999985444
|
|
| >cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00036 Score=55.16 Aligned_cols=59 Identities=14% Similarity=0.304 Sum_probs=49.2
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcC
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGET 584 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~ 584 (595)
+-+..+|+||.++++.++|+++|+||.++..++....+.+...+.++. .+.+++.|++.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~--~~~~~~~L~~~ 60 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--IEKAIEVLQER 60 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC--HHHHHHHHHHC
Confidence 456789999999999999999999999998876654567888899987 66888888763
|
Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00071 Score=56.21 Aligned_cols=71 Identities=10% Similarity=0.164 Sum_probs=58.5
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC-CcHHHHHHHhcCCCcceEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE-PSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~-~~~e~l~~L~~~~~v~~v~~ 592 (595)
|.|-+.-.++||++.+|+.++...|.||..|.++..+.++..-+.+.++++ .-+.+.++|.++.+|.+|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHHHHHHHhcCcCeEEEEE
Confidence 677788889999999999999999999999999987777777666666543 33378888888998888765
|
|
| >cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00041 Score=56.19 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=53.3
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGET 584 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~ 584 (595)
-+-+..+|+||.+.++...|+++++||.++...+....+.+.+++.++..-++++++.|++.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHC
Confidence 35577899999999999999999999999988776667788899999876666889988874
|
This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0016 Score=76.05 Aligned_cols=172 Identities=18% Similarity=0.210 Sum_probs=106.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-----------HHcC-------------Ccc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-----------RATG-------------VGL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~~l~ell~~ 246 (595)
++|+|||.|.||..||..+...|++|+.||..... +.+ .+.| ++. .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 57999999999999999999999999999987521 111 1111 111 245 45799
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCCCCCCcccccCCc
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEEPPAKDSKLVLHEN 325 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 325 (595)
||+|+=++|...+.+.-+-++.=..++++++|....++ +....|.+++.. .++ .+++-|.+-+ .-||.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~--~g~Hff~P~~---~~~lVE--- 462 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKRPENF--CGMHFFNPVH---RMPLVE--- 462 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccE--EEEecCCccc---ccceEE---
Confidence 99999999988888877766666778999888655433 355566666643 245 6666664332 245553
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 326 VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 326 vilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
|+-.||.. .++++.+.+|++.-+-..++. ...+..+.+.+. ||+..|.+|
T Consensus 463 vv~g~~T~-----------~~~~~~~~~~~~~lgk~pv~v-~d~pGfv~nRi~~~~~~ea~~l 513 (715)
T PRK11730 463 VIRGEKTS-----------DETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLFPYFAGFSQL 513 (715)
T ss_pred eeCCCCCC-----------HHHHHHHHHHHHHhCCceEEe-cCcCchhHHHHHHHHHHHHHHH
Confidence 45445432 233344444443332223322 234455565554 666555444
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00064 Score=70.36 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=68.2
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|..|..++... .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG~----p~~i 215 (284)
T PRK14190 152 YNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVGK----PKLI 215 (284)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCC----CCcC
Confidence 3568999999999995 589999999999999999886432 2588999999999999973 4578
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
+.+.+ |+|+++||+|.-.+
T Consensus 216 ~~~~i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 216 TADMV---KEGAVVIDVGVNRL 234 (284)
T ss_pred CHHHc---CCCCEEEEeecccc
Confidence 88765 89999999986553
|
|
| >cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00034 Score=56.90 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=52.7
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC---CCcHHHHHHHhcCCCcceEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE---EPSREVLKKIGETPAIEEFV 591 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~---~~~~e~l~~L~~~~~v~~v~ 591 (595)
.|-+...|+||.++.+++.|+++++||.+|.......++.+.+.+.++. ..-++++++|+++++|.++.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~ 73 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP 73 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence 4556778999999999999999999999998754333366766665543 22337899999999987754
|
The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0031 Score=66.07 Aligned_cols=173 Identities=22% Similarity=0.193 Sum_probs=104.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-H-----------HHHHcCC-------------cc-cCHHHhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-D-----------RARATGV-------------GL-VSFEEAIS 245 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~-----------~a~~~g~-------------~~-~~l~ell~ 245 (595)
-+++||||.|.||+.+|..+...|+.|..+|++... + ...+.|- .. .++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 378999999999999999999877999999987411 1 1111121 00 1222 689
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEE-eccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCC
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV-NVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili-N~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
+||+|+=++|-.-+.++-+-++.=...+|+++|- |+|+ +...++.++++.- =...|++-|.+-|+ =||.
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~rp-er~iG~HFfNP~~~---m~LV--- 151 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALKRP-ERFIGLHFFNPVPL---MPLV--- 151 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhCCc-hhEEEEeccCCCCc---ceeE---
Confidence 9999999999888877776666666688998885 4443 3556666776333 22477777765433 2444
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 325 NVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 325 nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
-+|-+.+.+ .++++.+.+|.+.-.-..++. -..+-..++.+- ||+..|.++
T Consensus 152 EvI~g~~T~-----------~e~~~~~~~~~~~igK~~vv~-~D~pGFi~NRil~~~~~eA~~l 203 (307)
T COG1250 152 EVIRGEKTS-----------DETVERVVEFAKKIGKTPVVV-KDVPGFIVNRLLAALLNEAIRL 203 (307)
T ss_pred EEecCCCCC-----------HHHHHHHHHHHHHcCCCCEee-cCCCceehHhHHHHHHHHHHHH
Confidence 354444421 344555666654422111221 122233344333 666666555
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00078 Score=69.63 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=67.4
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... .++.+.+++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----~~~i 214 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------KDLPQVAKEADILVVATGL----AKFV 214 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 46789999999999965 79999999999999999886532 2588999999999999983 4567
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+. .|+|+++||+|--.
T Consensus 215 ~~~~---vk~GavVIDvGin~ 232 (284)
T PRK14170 215 KKDY---IKPGAIVIDVGMDR 232 (284)
T ss_pred CHHH---cCCCCEEEEccCcc
Confidence 7765 48999999998544
|
|
| >PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00069 Score=56.24 Aligned_cols=70 Identities=4% Similarity=0.130 Sum_probs=54.6
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEc--CCCCcHHHHHHHhcCCCcceEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV--DEEPSREVLKKIGETPAIEEFV 591 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~--d~~~~~e~l~~L~~~~~v~~v~ 591 (595)
|++.+..+|+||++.+|+.++...|+||..+.++..+..+..-+.+.+ |+..-+.+.++|.++..|.+|.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~ 74 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVN 74 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEE
Confidence 677788899999999999999999999999999976666655444443 3333347788888888887765
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00069 Score=59.87 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHH----cCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceE
Q 046427 203 VGTEVARRAKGLGMNVIAHDPYAQADRARA----TGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVR 277 (595)
Q Consensus 203 IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~----~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gai 277 (595)
-+..+++.|+..|++|.+|||+........ .+++.. ++++.++.+|+|+++++ .++-..+--......|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD-HDEFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec-CHHHhccCHHHHHHhcCCCCE
Confidence 356789999999999999999986655544 456655 79999999999999998 555555433445567889999
Q ss_pred EEec
Q 046427 278 IVNV 281 (595)
Q Consensus 278 liN~ 281 (595)
|+|+
T Consensus 97 iiD~ 100 (106)
T PF03720_consen 97 IIDG 100 (106)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9997
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00092 Score=57.72 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=59.1
Q ss_pred cCccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC-CCcHHHHHHHhcCCCcceEEEE
Q 046427 519 LEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE-EPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 519 ~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~-~~~~e~l~~L~~~~~v~~v~~i 593 (595)
...++|-+...|+||++++|+.+++..|+||.++.++..+..+-.=|.+.+.+ ..=+++.++|.++..|.+|..+
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i~Qi~kQL~KLidVikV~~l 81 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEKLEDVLKVRRN 81 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHHHHHHHHHhCCcCEEEEEEC
Confidence 34578888889999999999999999999999999998777776655555553 2233777788888888887654
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0017 Score=76.04 Aligned_cols=172 Identities=13% Similarity=0.147 Sum_probs=105.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-----------HHcC-------------Ccc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-----------RATG-------------VGL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~~l~ell~~ 246 (595)
++|+|||.|.||+.+|..+...|++|+.||+.... +.. .+.| ++. .+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 57999999999999999999999999999986521 110 1111 111 2454 5799
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCCCCCCcccccCCc
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEEPPAKDSKLVLHEN 325 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 325 (595)
||+|+=++|...+.+.-+-++.=+.++++++|....+ -++..+|...+.. .++ .+++-|.+- ..-||.+
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~p~r~--ig~Hff~P~---~~m~LvE--- 484 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSRPEKV--IGMHYFSPV---DKMQLLE--- 484 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCCccce--EEEeccCCc---ccCceEE---
Confidence 9999999998888887776666677899988764322 2456666666644 344 677766532 2245653
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 326 VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 326 vilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
|+-+|+.+ . ++++.+.+|++..+-..++- ...+..+.+.+. ||+..|.+|
T Consensus 485 vv~g~~Ts---~--------~~~~~~~~~~~~lgk~pv~v-~d~pGFi~NRi~~~~~~ea~~l 535 (737)
T TIGR02441 485 IITHDGTS---K--------DTLASAVAVGLKQGKVVIVV-KDGPGFYTTRCLGPMLAEVIRL 535 (737)
T ss_pred EeCCCCCC---H--------HHHHHHHHHHHHCCCeEEEE-CCcCCchHHHHHHHHHHHHHHH
Confidence 55555532 2 23333444443322222222 233444555444 777666655
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00081 Score=71.31 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=63.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhc-C-CCEEEEECCCCcH-HH-H---HHcCCc---ccCHHHhccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKG-L-GMNVIAHDPYAQA-DR-A---RATGVG---LVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~-~-G~~V~~~d~~~~~-~~-a---~~~g~~---~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
-+++||||+|.+|+..++.+.. + .-+|.+||++... +. + .+.|+. ..+.++++++||+|++|+|. ..
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---RK 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---CC
Confidence 4789999999999997776653 2 3589999998632 21 1 234532 34799999999999999984 34
Q ss_pred ccccHHHHhcCCCceEEEeccCC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg 284 (595)
-++..+. +|||+.+..++..
T Consensus 205 P~~~~~~---l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGAD 224 (325)
T ss_pred cEecHHH---cCCCCEEEecCCC
Confidence 5665543 6999999999853
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00051 Score=55.11 Aligned_cols=58 Identities=14% Similarity=0.311 Sum_probs=46.3
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGET 584 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~ 584 (595)
-+.+..+|+||.+++|+++|+++|+||.++.++.... .+.+.+.+|. ++.+.+.|++.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~--~~~~~~~L~~~ 60 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSD--PDKAKEALKEA 60 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECC--HHHHHHHHHHC
Confidence 3567889999999999999999999999999876433 4788888855 45777777653
|
Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains. |
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00067 Score=70.59 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=67.8
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (297)
T PRK14186 152 QQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------------QDLASITREADILVAAAGR----PNLI 215 (297)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 3568999999999996 579999999999999999886432 2688999999999999983 3577
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
..+. .|+|+++||+|--.+
T Consensus 216 ~~~~---ik~gavVIDvGin~~ 234 (297)
T PRK14186 216 GAEM---VKPGAVVVDVGIHRL 234 (297)
T ss_pred CHHH---cCCCCEEEEeccccc
Confidence 7765 589999999986553
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00072 Score=70.04 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=67.9
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|..|..+.... .++.+..++||+|+.++.. .+++
T Consensus 149 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 212 (287)
T PRK14173 149 YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------QDLPAVTRRADVLVVAVGR----PHLI 212 (287)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 3568999999999995 589999999999999999886532 1588999999999999973 4677
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
..+.+ |+|+++||+|--.+
T Consensus 213 ~~~~v---k~GavVIDVGin~~ 231 (287)
T PRK14173 213 TPEMV---RPGAVVVDVGINRV 231 (287)
T ss_pred CHHHc---CCCCEEEEccCccc
Confidence 77654 89999999986553
|
|
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.001 Score=54.39 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=53.8
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC--CCC-c-HHHHHHHhcCCCcceEEEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD--EEP-S-REVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d--~~~-~-~e~l~~L~~~~~v~~v~~i 593 (595)
.|.+...|+||.++.|.+.|+++++||..++..+.. ++.+-+.+.++ +.. . .+++++|+++++|.+|+++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~-~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPI-HGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCC-CCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 366788999999999999999999999999875322 33454554443 332 1 4899999999999999875
|
a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0021 Score=74.95 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=104.7
Q ss_pred CEEEEEeCChHHHHHHHHHh-cCCCEEEEECCCCcH-HHH-----------HHcC-------------Cccc-CHHHhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAK-GLGMNVIAHDPYAQA-DRA-----------RATG-------------VGLV-SFEEAIS 245 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~~-~l~ell~ 245 (595)
++|+|||.|.||+.+|..+. ..|++|..||++... +.+ .+.| ++.. ++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 57999999999999999887 589999999987521 111 1111 1122 45 4679
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCCCCCCcccccCC
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
+||+|+=++|...+.+.-+-++.=+.++++++|....++ +...+|.++++. .++ .+++-|.+- ..-||.+
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~--~g~HffnP~---~~~~lVE-- 454 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENV--IGLHYFSPV---EKMPLVE-- 454 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccE--EEEecCCcc---ccCceEE--
Confidence 999999999988888777766666678888877654433 345556666543 355 666666432 2345553
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 325 NVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 325 nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
|+-+|+.. .++++.+.+|++.-+-.+++-. ..+..+.+.+. ||+..|.++
T Consensus 455 -vv~g~~T~-----------~~~~~~~~~~~~~~gk~pv~v~-d~pGfi~nRl~~~~~~Ea~~l 505 (699)
T TIGR02440 455 -VIPHAGTS-----------EQTIATTVALAKKQGKTPIVVA-DKAGFYVNRILAPYMNEAARL 505 (699)
T ss_pred -EeCCCCCC-----------HHHHHHHHHHHHHcCCeEEEEc-cccchHHHHHHHHHHHHHHHH
Confidence 55555432 3344445555544333333222 33445555444 666665554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00076 Score=69.69 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=66.0
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||-+ .+|+.+|..|...|+.|..++... .++.+..++||+|+.+++. .+++.
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------~~l~~~~~~ADIvIsAvGk----~~~i~ 217 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------QNLPSIVRQADIIVGAVGK----PEFIK 217 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEeCCC----cCccC
Confidence 568999999999995 589999999999999999987532 2578899999999999983 45677
Q ss_pred HHHHhcCCCceEEEeccC
Q 046427 266 DEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 266 ~~~l~~mk~gailiN~ar 283 (595)
.+. .|+|+++||+|-
T Consensus 218 ~~~---ik~gavVIDvGi 232 (284)
T PRK14177 218 ADW---ISEGAVLLDAGY 232 (284)
T ss_pred HHH---cCCCCEEEEecC
Confidence 765 489999999984
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00075 Score=69.73 Aligned_cols=81 Identities=16% Similarity=0.293 Sum_probs=67.0
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|..|..+.... .+|.+..++||+|+.+++. .+++
T Consensus 150 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----p~~i 213 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT------------RNLKQLTKEADILVVAVGV----PHFI 213 (282)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 3568999999999996 579999999999999999886432 2588999999999999983 4568
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+. .|+|+++||+|--.
T Consensus 214 ~~~~---vk~GavVIDvGin~ 231 (282)
T PRK14169 214 GADA---VKPGAVVIDVGISR 231 (282)
T ss_pred CHHH---cCCCcEEEEeeccc
Confidence 7765 58999999998543
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00091 Score=67.33 Aligned_cols=106 Identities=23% Similarity=0.311 Sum_probs=64.6
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEE-CC-------CC-cHHH---H-HHcC-------CcccCHHHhc-cc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH-DP-------YA-QADR---A-RATG-------VGLVSFEEAI-ST 246 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d~-------~~-~~~~---a-~~~g-------~~~~~l~ell-~~ 246 (595)
.++.|+++.|.|+|.+|+.+|+.|..+|++|++. |. .- +.+. . .+.| ...++.++++ .+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 4689999999999999999999999999999953 43 21 1111 1 1122 1122333333 36
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
||+++-|.+ .+.|+.+...+++ =.+|+-.+-+.+ . ....+.|++..+
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi 153 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGV 153 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCC
Confidence 788877774 3456666666665 334455555554 3 333455555544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0032 Score=73.64 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=107.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-----------HHcC-------------Ccc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-----------RATG-------------VGL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~~l~ell~~ 246 (595)
++|+|||.|.||..+|..+...|++|..||++... +.+ .+.| ++. .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 47999999999999999999999999999987521 111 1111 111 134 45799
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCCCCCCcccccCCc
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEEPPAKDSKLVLHEN 325 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 325 (595)
||+|+=++|...+.+.-+-++.=+.++++++|-...++ ++..++...++. .++ .++.-|.+-+ .-||.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~p~r~--ig~Hff~P~~---~~~lvE--- 462 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKRPENF--CGMHFFNPVH---RMPLVE--- 462 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCcccE--EEEecCCCcc---cCceEe---
Confidence 99999999988887777766666678999888655433 455666666643 345 6666665332 346653
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 326 VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 326 vilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
||-+++.+ .++.+.+.+|++.-+-.+++.. ..+..+.+.+. ||+.-|.+|
T Consensus 463 vv~g~~Ts-----------~~~~~~~~~~~~~lgk~pv~v~-d~pGfi~NRl~~~~~~ea~~l 513 (714)
T TIGR02437 463 VIRGEKSS-----------DETIATVVAYASKMGKTPIVVN-DCPGFFVNRVLFPYFGGFSKL 513 (714)
T ss_pred ecCCCCCC-----------HHHHHHHHHHHHHcCCEEEEeC-CcccchHHHHHHHHHHHHHHH
Confidence 44444432 3344455555543332333222 44556666555 777666655
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00082 Score=69.29 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=66.2
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||-+ .+|+.+|..|...|+.|..++... .++.+..++||+|+.+++. .+++.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------~~l~~~~~~ADIvIsAvGk----p~~i~ 216 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------KNLKEVCKKADILVVAIGR----PKFID 216 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence 558999999999996 579999999999999999987532 2588999999999999983 45687
Q ss_pred HHHHhcCCCceEEEeccCC
Q 046427 266 DEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg 284 (595)
.+. .|+|+++||+|--
T Consensus 217 ~~~---ik~gavVIDvGin 232 (278)
T PRK14172 217 EEY---VKEGAIVIDVGTS 232 (278)
T ss_pred HHH---cCCCcEEEEeecc
Confidence 766 5899999999743
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00069 Score=70.19 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=52.7
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCcH--HHHHHcC----Ccc-cCHHHhccccCEEEEeCCCC
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQA--DRARATG----VGL-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g----~~~-~~l~ell~~aD~V~l~~Plt 257 (595)
..+.+|++.|+|.|.+|++++..|...| .+|.+++++... ..+...+ +.. .++.+.+.++|+|+.++|..
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 3578899999999999999999999999 689999997532 1222222 111 23457778999999999864
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00085 Score=69.35 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=66.5
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. .++.+..++||+|+.++.- .+++
T Consensus 151 y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------~nl~~~~~~ADIvIsAvGk----p~~i 214 (282)
T PRK14166 151 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLL 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 3568999999999996 579999999999999999887532 2588999999999999983 4578
Q ss_pred cHHHHhcCCCceEEEeccC
Q 046427 265 NDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~ar 283 (595)
..+. .|+|+++||+|-
T Consensus 215 ~~~~---vk~GavVIDvGi 230 (282)
T PRK14166 215 RSDM---VKEGVIVVDVGI 230 (282)
T ss_pred CHHH---cCCCCEEEEecc
Confidence 7765 589999999984
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=69.77 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=59.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhc-CC-CEEEEECCCCcH--HHHHH---cC--Ccc-cCHHHhccccCEEEEeCCCChhc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKG-LG-MNVIAHDPYAQA--DRARA---TG--VGL-VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~--~~a~~---~g--~~~-~~l~ell~~aD~V~l~~Plt~~t 260 (595)
..++++|||+|.+|+.+++.+.. ++ .+|.+||++... ..+.+ .| +.. .++++++++||+|+.++|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46799999999999999986553 45 689999997632 22222 14 333 37889999999998888743
Q ss_pred cccccHHHHhcCCCceEEEec
Q 046427 261 SKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ 281 (595)
..++..+ .+++|+ +||+
T Consensus 201 ~pvl~~~---~l~~g~-~i~~ 217 (314)
T PRK06141 201 EPLVRGE---WLKPGT-HLDL 217 (314)
T ss_pred CCEecHH---HcCCCC-EEEe
Confidence 4556553 468998 4554
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0023 Score=62.50 Aligned_cols=97 Identities=24% Similarity=0.162 Sum_probs=64.9
Q ss_pred eeeecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcH-H-HHHHc----CCc-----cc---CHHHhccccCEEE
Q 046427 187 GVSLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQA-D-RARAT----GVG-----LV---SFEEAISTADFIS 251 (595)
Q Consensus 187 g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~-~a~~~----g~~-----~~---~l~ell~~aD~V~ 251 (595)
|..+.++++.|+|- |.+|+.+++.+...|.+|..++++... + ..... +.. .. ++.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 44678999999995 999999999999999999999886521 1 11111 221 11 2457788999999
Q ss_pred EeCCCChhccccccHHHHhcCCCceEEEeccCCchh
Q 046427 252 LHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287 (595)
Q Consensus 252 l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v 287 (595)
.++|....+ .+... ...+++.+++|+.+..-+
T Consensus 103 ~at~~g~~~--~~~~~--~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 103 AAGAAGVEL--LEKLA--WAPKPLAVAADVNAVPPV 134 (194)
T ss_pred ECCCCCcee--chhhh--cccCceeEEEEccCCCCC
Confidence 998854421 11111 124557788888776654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00092 Score=69.42 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=67.3
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|+.|..++.+. .++.+.+++||+|+.+++. .+++
T Consensus 154 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------~~l~~~~~~ADIvVsAvGk----p~~i 217 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------RDLADYCSKADILVAAVGI----PNFV 217 (294)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 3568999999999996 579999999999999999987532 2588999999999999983 4567
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+.+ |+|+++||+|--.
T Consensus 218 ~~~~i---k~gaiVIDVGin~ 235 (294)
T PRK14187 218 KYSWI---KKGAIVIDVGINS 235 (294)
T ss_pred CHHHc---CCCCEEEEecccc
Confidence 77664 8999999998543
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00095 Score=68.98 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=66.0
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. .++.+..++||+|+.+++. .+++
T Consensus 152 y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------~dl~~~~k~ADIvIsAvGk----p~~i 215 (282)
T PRK14180 152 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFI 215 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------CCHHHHhhhcCEEEEccCC----cCcC
Confidence 3568999999999996 589999999999999999986532 2678889999999999983 4567
Q ss_pred cHHHHhcCCCceEEEeccC
Q 046427 265 NDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~ar 283 (595)
..+. .|+|+++||+|-
T Consensus 216 ~~~~---vk~gavVIDvGi 231 (282)
T PRK14180 216 TADM---VKEGAVVIDVGI 231 (282)
T ss_pred CHHH---cCCCcEEEEecc
Confidence 7765 589999999984
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=69.01 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=67.5
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++.+.+++||+|+.++.. .+++
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------------~nl~~~~~~ADIvv~AvGk----~~~i 224 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------------PDPESIVREADIVIAAAGQ----AMMI 224 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 35689999999999965 79999999999999999986532 2588999999999999974 3688
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+. .|+|+++||+|--.
T Consensus 225 ~~~~---vk~gavVIDvGin~ 242 (299)
T PLN02516 225 KGDW---IKPGAAVIDVGTNA 242 (299)
T ss_pred CHHH---cCCCCEEEEeeccc
Confidence 7766 48999999998544
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0011 Score=68.64 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=65.6
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||-+ .+|+.+|..|...|+.|..++... .+|.+..++||+|+.++.. .+++.
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T------------~~L~~~~~~ADIvV~AvGk----p~~i~ 217 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT------------HNLSSITSKADIVVAAIGS----PLKLT 217 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----CCccC
Confidence 557999999999996 579999999999999999876432 2588999999999999983 36787
Q ss_pred HHHHhcCCCceEEEeccC
Q 046427 266 DEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 266 ~~~l~~mk~gailiN~ar 283 (595)
.+. .|+|+++||+|-
T Consensus 218 ~~~---vk~GavVIDvGi 232 (288)
T PRK14171 218 AEY---FNPESIVIDVGI 232 (288)
T ss_pred HHH---cCCCCEEEEeec
Confidence 765 489999999984
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=68.23 Aligned_cols=111 Identities=19% Similarity=0.280 Sum_probs=81.8
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhc--CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKG--LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.+.++.||++.|||-+ .+|+.+|..|.. .++.|..+.... .++.+.+++||+|+.+++. .+
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGk----p~ 215 (284)
T PRK14193 152 YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGV----AH 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCC----cC
Confidence 3568999999999985 589999999987 789999886532 2688999999999999984 35
Q ss_pred cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcH
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTT 337 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ 337 (595)
++..+. .|+|+++||+|--.+ .+|++.| ||- .+ ..+... .+||--||--.
T Consensus 216 ~i~~~~---ik~GavVIDvGin~~----------~~gkl~G---Dvd-~~-------v~~~a~-~iTPVPGGVGp 265 (284)
T PRK14193 216 LVTADM---VKPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-------VWEVAG-AVSPNPGGVGP 265 (284)
T ss_pred ccCHHH---cCCCCEEEEcccccc----------CCCcEEe---ecC-Hh-------HHhhCC-EEeCCCCChhH
Confidence 787765 489999999986543 3456643 554 22 122233 38998777644
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0012 Score=70.14 Aligned_cols=80 Identities=23% Similarity=0.214 Sum_probs=66.7
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||-+ .+|+.+|..|...+..|..+.... .++.+.+++||+|+.++.. .+++.
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------------~nl~~~~r~ADIVIsAvGk----p~~i~ 289 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITREADIIISAVGQ----PNMVR 289 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcCC
Confidence 568999999999996 579999999999999999986432 2688999999999999973 45787
Q ss_pred HHHHhcCCCceEEEeccCCc
Q 046427 266 DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~ 285 (595)
.+. .|+|+++||+|--.
T Consensus 290 ~d~---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 290 GSW---IKPGAVVIDVGINP 306 (364)
T ss_pred HHH---cCCCCEEEeccccc
Confidence 766 48999999998433
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00078 Score=69.52 Aligned_cols=92 Identities=32% Similarity=0.381 Sum_probs=71.1
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH-HHH-HcCCc----c---cCHHHhccccCEEEEeC--CCCh
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD-RAR-ATGVG----L---VSFEEAISTADFISLHM--PLTP 258 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~-~~g~~----~---~~l~ell~~aD~V~l~~--Plt~ 258 (595)
+...++.|||.|-+|..-|+.+.++|.+|...|.+..+- ... ..+.+ + ..+++.+.++|+|+-++ |- .
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg-a 244 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG-A 244 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC-C
Confidence 566689999999999999999999999999999875321 111 12222 1 24889999999998664 42 3
Q ss_pred hccccccHHHHhcCCCceEEEecc
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~a 282 (595)
..-.++.++.+++||||++|||++
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 456778888999999999999997
|
|
| >cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0014 Score=53.83 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=52.8
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCC-cHHHHHHHhcCCCcceEEEEeC
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEP-SREVLKKIGETPAIEEFVFLKL 595 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~-~~e~l~~L~~~~~v~~v~~i~~ 595 (595)
|-+...|++|+++.|++.+++.++||.+++.... +. -.+.+++.+.- =..++++|+++++|.+|.-+++
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~--~~-i~l~i~v~~~~~L~~li~~L~~i~gV~~V~R~~~ 72 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK--GR-IYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPY 72 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC--Ce-EEEEeEecCHHHHHHHHHHHhCCCCceEEEEeec
Confidence 5577889999999999999999999999999543 32 22234443322 2489999999999999987753
|
ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence |
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=67.84 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=65.9
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcC----CCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGL----GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++.+.+++||+|+.+++. .
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------------~~l~~~~~~ADIvV~AvG~----p 211 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------------ENLTEILKTADIIIAAIGV----P 211 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----c
Confidence 568999999999996 4799999999877 78999876432 2588999999999999983 3
Q ss_pred ccccHHHHhcCCCceEEEeccCCc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~ 285 (595)
+++..+. .|+|+++||+|--.
T Consensus 212 ~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 212 LFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred CccCHHH---cCCCCEEEEecccc
Confidence 5787766 48999999998544
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0013 Score=69.03 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=65.0
Q ss_pred cCCEEEEEeCChHHHHHHHHHhc-CCC-EEEEECCCCcH--HHHHHc---CCc--ccCHHHhccccCEEEEeCCCChhcc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKG-LGM-NVIAHDPYAQA--DRARAT---GVG--LVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~--~~a~~~---g~~--~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
..++++|||.|.+|+..++.+.. ++. +|.+||++... ..+.+. ++. ..++++++++||+|+.|+|.+ .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46799999999999999999863 664 79999997632 222222 332 237899999999999999853 4
Q ss_pred ccccHHHHhcCCCceEEEeccCC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg 284 (595)
-++.. .+|||+.|+.+|.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 56654 26999999999853
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0014 Score=71.03 Aligned_cols=91 Identities=26% Similarity=0.360 Sum_probs=67.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCc--HHHHHHcCCcccC---HHHhccccCEEEEeCCCChhccc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQ--ADRARATGVGLVS---FEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~--~~~a~~~g~~~~~---l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.|+++++.|||.|.||.-+|+.|...| .+|+..+|... .+.+.+.|...++ +.+.+.++|+|+.++. ....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 389999999999999999999999999 57888898763 3457788876654 5567899999999965 3455
Q ss_pred cccHHHHhcC-C--CceEEEecc
Q 046427 263 MFNDEAFFKM-K--KGVRIVNVA 282 (595)
Q Consensus 263 li~~~~l~~m-k--~gailiN~a 282 (595)
++..+.+... + +.-++||.+
T Consensus 252 ii~~~~ve~a~~~r~~~livDia 274 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIA 274 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEec
Confidence 5655544322 1 114666665
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0014 Score=69.29 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=67.0
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+..+. -++.+..++||+|+.+++. .+++
T Consensus 208 ~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------~nl~~~~~~ADIvIsAvGk----p~~v 271 (345)
T PLN02897 208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------KDPEQITRKADIVIAAAGI----PNLV 271 (345)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 35689999999999965 79999999999999999886432 2578899999999999983 4568
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+. .|+|+++||+|--.
T Consensus 272 ~~d~---vk~GavVIDVGin~ 289 (345)
T PLN02897 272 RGSW---LKPGAVVIDVGTTP 289 (345)
T ss_pred CHHH---cCCCCEEEEccccc
Confidence 7765 48999999998543
|
|
| >TIGR00119 acolac_sm acetolactate synthase, small subunit | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0016 Score=61.74 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=56.3
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v~~ 592 (595)
|.|.+...|+||++++|+.+|.++|+||.++.++..+..+...+.+.++.. .-+.+.++|.++-.|.+|..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~ 74 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSD 74 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEe
Confidence 567788999999999999999999999999999987656677777777662 22256677777777777654
|
acetohydroxyacid synthase is a synonym. |
| >PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0014 Score=62.25 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=57.7
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceEEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v~~i 593 (595)
|.+-+...|+||++++|+.+|+++|+||.++.++..+..+...+.+.++.. .=+.+.++|.++..|.+|..+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~ 76 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDL 76 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEec
Confidence 677788999999999999999999999999999877655667677776643 334777788888888877643
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.011 Score=62.90 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=110.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HHHHHHcC----C-cccCHHHh---ccccCEEEEeCCCChhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--ADRARATG----V-GLVSFEEA---ISTADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g----~-~~~~l~el---l~~aD~V~l~~Plt~~t~~ 262 (595)
..||+||||.||+.+|..+...|++|.+|+|... .+..++.+ + ...+++|+ ++.=--|++.+---.-...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 4699999999999999999999999999999863 23223222 1 12366665 5566677777643211133
Q ss_pred cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHH
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEG 342 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~ 342 (595)
.| ++.+..|-+|=++||-+-.---|+..-.++|.+..|...|.-|.+.|-- -+ .-|-+ +-+-+.|+++.
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeG----A~-~GPSi-----MpGG~~eay~~ 152 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEG----AR-HGPSI-----MPGGQKEAYEL 152 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccc----cc-cCCCc-----CCCCCHHHHHH
Confidence 33 4567789999999999988888988889999999888899999988832 12 23554 55778899887
Q ss_pred HHHHHHHHHHHHHcCCC
Q 046427 343 VAIEIAEAVIGALKGEL 359 (595)
Q Consensus 343 ~~~~~~~~l~~~l~g~~ 359 (595)
++ -+.+.|.+-..|++
T Consensus 153 v~-pil~~IaAk~~g~p 168 (473)
T COG0362 153 VA-PILTKIAAKVDGEP 168 (473)
T ss_pred HH-HHHHHHHhhcCCCC
Confidence 74 45666666555543
|
|
| >PRK00194 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00071 Score=57.70 Aligned_cols=66 Identities=24% Similarity=0.228 Sum_probs=47.9
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEE--EEEcCC-CCcH-HHHHHHhcCCCcc
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVM--TIGVDE-EPSR-EVLKKIGETPAIE 588 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~--vi~~d~-~~~~-e~l~~L~~~~~v~ 588 (595)
.+.+.+..+|+||+++.|++.|+++|+||..++... .++...+ .++++. +.+. ++.++|.++....
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~ 72 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI--MDGYFTMIMLVDISESKKDFAELKEELEELGKEL 72 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh--hCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 356778899999999999999999999999998865 3456666 445554 3334 4556666655443
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0074 Score=61.65 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=73.3
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEE--------CCCC-cHHHH------H-Hc------------CCccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--------DPYA-QADRA------R-AT------------GVGLV 238 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~--------d~~~-~~~~a------~-~~------------g~~~~ 238 (595)
+.++.|+|+.|.|+|++|+.+|+.|..+|++|++. |+.- +.+.. + +. +.+.+
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 35799999999999999999999999999999953 3331 11100 0 11 12334
Q ss_pred CHHHhc-cccCEEEEeCCCChhccccccHHHHhcCC--CceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 239 SFEEAI-STADFISLHMPLTPATSKMFNDEAFFKMK--KGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 239 ~l~ell-~~aD~V~l~~Plt~~t~~li~~~~l~~mk--~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+-++++ .+||+++-|. +.+.|+.+....++ +-.+|+-.+-+++-. + ..+.|.+..|
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~-~-a~~~L~~rGI 171 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA-E-AIEVFRQAGV 171 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH-H-HHHHHHHCCc
Confidence 455554 3799998885 67889998888774 345777777777644 3 3455555554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0016 Score=60.94 Aligned_cols=66 Identities=14% Similarity=0.305 Sum_probs=58.3
Q ss_pred EecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEE
Q 046427 527 RQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 527 ~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~ 592 (595)
.-.+.||+++.|.+.++++||+|........+-.+++...+-+++++|.+++.+|+++++|+.+..
T Consensus 101 ~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el~~i~gVk~i~I 166 (167)
T COG2150 101 EDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDELKKIDGVKKISI 166 (167)
T ss_pred ccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEeccCCHHHHHHHhcccCceeEEe
Confidence 356789999999999999999999877665557788999999999999999999999999998753
|
|
| >PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.002 Score=51.57 Aligned_cols=61 Identities=18% Similarity=0.376 Sum_probs=49.3
Q ss_pred CCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceE
Q 046427 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEF 590 (595)
Q Consensus 530 D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v 590 (595)
|+||++.+|..++...|+||..|.++..+..+..-+.+.+++. .-+.+..+|.++.+|.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 6899999999999999999999999997777777777776663 334888999999888765
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.002 Score=67.93 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=67.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEEE-ECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVIA-HDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
.+|||||+|+||+.+++.+... ++++.+ ||++.........++. ..+.++++.+.|+|++|+|... . -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~t--h---~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSAT--D---IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCcc--C---HHHHH
Confidence 4899999999999999999765 799886 6876422222223332 2367788899999999999533 2 12333
Q ss_pred hcCCCceEEEeccCC--chhc-HHHHHHHHhc-CCee
Q 046427 270 FKMKKGVRIVNVARG--GVVD-EEALVRALDS-GIIS 302 (595)
Q Consensus 270 ~~mk~gailiN~arg--~~vd-~~aL~~aL~~-g~i~ 302 (595)
..|+.|.-+|+..-- .+-+ .+.+-++-++ |++.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 446677777777521 1112 3445555563 6663
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0091 Score=69.88 Aligned_cols=172 Identities=16% Similarity=0.138 Sum_probs=105.2
Q ss_pred CEEEEEeCChHHHHHHHHHh-cCCCEEEEECCCCc-HHHH-----------HHcC-------------Ccc-cCHHHhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAK-GLGMNVIAHDPYAQ-ADRA-----------RATG-------------VGL-VSFEEAIS 245 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~ 245 (595)
++|+|||.|.||..+|..+. ..|++|..||+... .+.+ .+.| ++. .++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 88999999998642 1111 1111 111 134 4679
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCCCCCCcccccCC
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
+||+|+=++|...+.+.-+-++.=+.++|+++|.....+ +....|.+.+.. .++ .+++-|.+- ..-||.+
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~--ig~Hff~P~---~~~~lVE-- 459 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARPEQV--IGLHYFSPV---EKMPLVE-- 459 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCcccce--EEEecCCcc---ccCceEE--
Confidence 999999999988888777766666678999988765443 355566666543 355 666666432 2235553
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 325 NVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 325 nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
|+-.|+. + .++++.+.+|++..+...++- ...+..+.+.+. ||+..|.+|
T Consensus 460 -vv~g~~T--s---------~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~~~~~EA~~l 510 (708)
T PRK11154 460 -VIPHAKT--S---------AETIATTVALAKKQGKTPIVV-RDGAGFYVNRILAPYINEAARL 510 (708)
T ss_pred -EECCCCC--C---------HHHHHHHHHHHHHcCCceEEE-eccCcHHHHHHHHHHHHHHHHH
Confidence 4444442 2 233444444444333222222 123344555444 666666555
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0023 Score=66.50 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=64.9
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcC----CCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGL----GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++.+..++||+|+.+++. .
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~nl~~~~~~ADIvIsAvGk----p 215 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS------------KNLKKECLEADIIIAALGQ----P 215 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC------------CCHHHHHhhCCEEEEccCC----c
Confidence 567999999999996 5799999999865 68898875432 2688899999999999983 4
Q ss_pred ccccHHHHhcCCCceEEEeccCCc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~ 285 (595)
+++..+. .|+|+++||+|--.
T Consensus 216 ~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 216 EFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred CccCHHH---cCCCCEEEEecCcc
Confidence 5677655 58999999998543
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00068 Score=59.58 Aligned_cols=86 Identities=26% Similarity=0.298 Sum_probs=58.4
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc--cCHHHhccccCEEEEeCCCChhccccccH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL--VSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
.++|+++.|||.|.+|..=++.+...|.+|.++++.. + ..+..++. -.+++.+..+|+|+.+++... +++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~-~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-----~n~ 75 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--E-FSEGLIQLIRREFEEDLDGADLVFAATDDPE-----LNE 75 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--H-HHHTSCEEEESS-GGGCTTESEEEE-SS-HH-----HHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--h-hhhhHHHHHhhhHHHHHhhheEEEecCCCHH-----HHH
Confidence 6899999999999999999999999999999999875 1 11222322 245677899999998886432 234
Q ss_pred HHHhcCCCceEEEecc
Q 046427 267 EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 267 ~~l~~mk~gailiN~a 282 (595)
......+.-.+++|++
T Consensus 76 ~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 76 AIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHTTSEEEET
T ss_pred HHHHHHhhCCEEEEEC
Confidence 4444455455788875
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0035 Score=64.59 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=68.4
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHc---C-CcccCHHHh-ccccCEEEEeCCCC--hhc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARAT---G-VGLVSFEEA-ISTADFISLHMPLT--PAT 260 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~---g-~~~~~l~el-l~~aD~V~l~~Plt--~~t 260 (595)
..+|+++|+|.|.+|++++..+...|.+|.++|++... +.+... + ....++++. +.++|+|+.|+|.. ++.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 56789999999999999999999999999999987522 222221 2 122345443 35899999999974 222
Q ss_pred cc-cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 261 SK-MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 261 ~~-li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.. .+. ...++++.+++|+.-... ++ .|.++.++
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~ 228 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKS 228 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHH
Confidence 11 122 234688888888876554 33 34444333
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0025 Score=69.82 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=57.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCc--HHHHHHcC-Cccc---CHHHhccccCEEEEeCCCChhcc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQ--ADRARATG-VGLV---SFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~--~~~a~~~g-~~~~---~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.+.|+++.|||.|.+|+.+|+.|...|. +++++++... ...+...+ .... ++.+++.+||+|+.|++. ..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a---~~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV---LE 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC---CC
Confidence 4789999999999999999999999985 7999998753 23334444 3332 456779999999999874 34
Q ss_pred ccccHHH
Q 046427 262 KMFNDEA 268 (595)
Q Consensus 262 ~li~~~~ 268 (595)
.+|..+.
T Consensus 255 ~vi~~~~ 261 (414)
T PRK13940 255 YIVTCKY 261 (414)
T ss_pred eeECHHH
Confidence 4555444
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0017 Score=69.25 Aligned_cols=90 Identities=22% Similarity=0.310 Sum_probs=63.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc---------CC------cc-cCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARAT---------GV------GL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---------g~------~~-~~l~ell~~aD~V~l~~P 255 (595)
++|+|||.|.+|..+|..+...| .|..|.++... +...+. +. .. .++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999888 67777654321 111111 11 11 267788999999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
...++..+.. ....++++..+|++..|=
T Consensus 87 -s~~~~~vl~~-i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 -SHGFRGVLTE-LAKELRPWVPVVSLVKGL 114 (341)
T ss_pred -HHHHHHHHHH-HHhhcCCCCEEEEEEeCC
Confidence 4445555533 334578888899998853
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0032 Score=66.18 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=70.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHHc---------C----Ccc-cCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARAT---------G----VGL-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g----~~~-~~l~ell~~aD~V~l~~Plt 257 (595)
++|+|||.|.+|..+|..+...|. +|+.+|........... . +.. .++++ +++||+|+++++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~- 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL- 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC-
Confidence 579999999999999999887665 89999986533222211 1 111 25666 7999999999983
Q ss_pred hhccc------------cccH--HHHhcCCCceEEEeccCCchhcHHHHHHH--HhcCCeeEEE--Ee
Q 046427 258 PATSK------------MFND--EAFFKMKKGVRIVNVARGGVVDEEALVRA--LDSGIISQAA--LD 307 (595)
Q Consensus 258 ~~t~~------------li~~--~~l~~mk~gailiN~arg~~vd~~aL~~a--L~~g~i~ga~--lD 307 (595)
+...+ ++.. +.+....+++++|+++---=+-...+.+. +...++.|.+ ||
T Consensus 80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 80 PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 32221 1111 22334457889999864222223444444 5555666654 56
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0038 Score=50.79 Aligned_cols=67 Identities=12% Similarity=0.349 Sum_probs=51.0
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEE--EEcCCCC-cHHHHHHHhcCCCcceEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMT--IGVDEEP-SREVLKKIGETPAIEEFV 591 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~v--i~~d~~~-~~e~l~~L~~~~~v~~v~ 591 (595)
|.+...|+||.++.|++.+++.|+||..++..+.. .+.+.+. +++.+.. -..++++|+++|+|.-..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~~ 71 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKVLS 71 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEEE
Confidence 56778999999999999999999999999986543 3444444 4444432 348999999999986543
|
The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0026 Score=66.24 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=65.6
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcC----CCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGL----GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t 260 (595)
.+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++.+.+++||+|+.++..
T Consensus 155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------~~l~~~~~~ADIvVsAvGk---- 218 (297)
T PRK14168 155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------KNLARHCQRADILIVAAGV---- 218 (297)
T ss_pred hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC------------cCHHHHHhhCCEEEEecCC----
Confidence 3668999999999995 5899999999876 78898875432 2588899999999999973
Q ss_pred cccccHHHHhcCCCceEEEeccCCc
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~ 285 (595)
.+++..+. .|+|+++||+|--.
T Consensus 219 p~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 219 PNLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred cCccCHHH---cCCCCEEEecCCCc
Confidence 45677765 48999999998544
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0025 Score=66.44 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=65.0
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhc----CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKG----LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
+.++.||++.|||-+ .+|+.+|..|.. .+..|..+.... .++.+.+++||+|+.+++..
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~---- 217 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA---- 217 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc----
Confidence 568999999999996 579999999876 578888876432 24789999999999999732
Q ss_pred ccccHHHHhcCCCceEEEeccCCc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~ 285 (595)
++|..+.+ |+|+++||+|-..
T Consensus 218 ~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 218 RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CccCHHHc---CCCCEEEEeeccc
Confidence 67888776 9999999998544
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.003 Score=67.47 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=63.2
Q ss_pred EEEEEeCChHHHHHHHHHhcCC--------CEEEEECCCC---cHHHHHH-----------cCC------cc-cCHHHhc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLG--------MNVIAHDPYA---QADRARA-----------TGV------GL-VSFEEAI 244 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G--------~~V~~~d~~~---~~~~a~~-----------~g~------~~-~~l~ell 244 (595)
+|+|||.|..|.++|..+..-| .+|..|.+.. ....... .|+ .. .++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 4899999999999999998655 8999997621 1111000 122 11 3689999
Q ss_pred cccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCC
Q 046427 245 STADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 245 ~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
++||+|++++| +...+.++. +.-..++++..+|+++.|
T Consensus 81 ~~ADiIIlAVP-s~~i~~vl~-~l~~~l~~~~~iVs~tKG 118 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGICK-QLKGHVKPNARAISCIKG 118 (342)
T ss_pred hcCCEEEEECC-hHHHHHHHH-HHHhhcCCCCEEEEEeCC
Confidence 99999999999 444555543 333457889999999987
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0023 Score=66.25 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=65.5
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhc----CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKG----LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t 260 (595)
.+.++.||++.|||-+ .+|+.+|..|.. .+..|..++.+. .++.+.+++||+|+.+++ .
T Consensus 151 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG----~ 214 (286)
T PRK14184 151 YGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIG----R 214 (286)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----C
Confidence 3568999999999996 479999999998 788998876432 258899999999999996 3
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
.+++..+.+ |+|+++||+|-
T Consensus 215 p~li~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 215 PRFVTADMV---KPGAVVVDVGI 234 (286)
T ss_pred CCcCCHHHc---CCCCEEEEeee
Confidence 567887665 99999999983
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0036 Score=68.66 Aligned_cols=107 Identities=23% Similarity=0.248 Sum_probs=71.3
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEE-C-------CC-CcHHHH------------------HHcCCcccC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH-D-------PY-AQADRA------------------RATGVGLVS 239 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d-------~~-~~~~~a------------------~~~g~~~~~ 239 (595)
|.+|.|+|+.|.|+|++|+..|+.|..+|++|++. | +. .+.+.. ...+....+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 55799999999999999999999999999999983 3 22 111100 111333445
Q ss_pred HHHhc-cccCEEEEeCCCChhccccccHHHHhcCCC-ce-EEEeccCCchhcHHHHHHHHhcC
Q 046427 240 FEEAI-STADFISLHMPLTPATSKMFNDEAFFKMKK-GV-RIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 240 l~ell-~~aD~V~l~~Plt~~t~~li~~~~l~~mk~-ga-iliN~arg~~vd~~aL~~aL~~g 299 (595)
-++++ ..||+++-|. +.+.|+.+....++. |+ +|+-.+-+ ....++.....+.|
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rg 359 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAK 359 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCC
Confidence 55654 3699998775 678888888888765 45 45555566 55655543333333
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0034 Score=68.98 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=72.4
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEE-C-------CCC-cHHHH---H------------HcCCcccCHHH
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH-D-------PYA-QADRA---R------------ATGVGLVSFEE 242 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d-------~~~-~~~~a---~------------~~g~~~~~l~e 242 (595)
+.++.|+||.|.|+|++|+.+|+.|..+|++|++. | +.- +.+.. + ..+.+..+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 45799999999999999999999999999999986 5 221 11100 0 00223344555
Q ss_pred hcc-ccCEEEEeCCCChhccccccHHHHhcCC--CceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 243 AIS-TADFISLHMPLTPATSKMFNDEAFFKMK--KGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 243 ll~-~aD~V~l~~Plt~~t~~li~~~~l~~mk--~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
++. +||+++-|.. .+.|+.+....++ +-.+|+-.+-+.+ ..++ .+.|.+..|
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~A-~~~L~~rGI 361 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPEA-IEVFLEAGV 361 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHHH-HHHHHHCCc
Confidence 555 6999998874 5667777666663 2347777777777 4443 455555554
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0022 Score=63.37 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=52.6
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH--HHHcC-Cccc--C-HHHhccccCEEEEeCCCCh
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR--ARATG-VGLV--S-FEEAISTADFISLHMPLTP 258 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~g-~~~~--~-l~ell~~aD~V~l~~Plt~ 258 (595)
.++.||++.|||.|.+|...++.|...|.+|++++|....+. ....+ +.+. . .++.+..+|+|+.++...+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 479999999999999999999999999999999998764321 12222 2221 1 2455788999988887444
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0026 Score=56.63 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=49.3
Q ss_pred EEEEEeCChHHHHHHHHHhcC--CCEEE-EECCCCcH--HHHHHcCCcc-cCHHHhcc--ccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGL--GMNVI-AHDPYAQA--DRARATGVGL-VSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~~-~~l~ell~--~aD~V~l~~Pl 256 (595)
++||||+|.+|+.....+... ++++. ++|++... ..+...|+.. .+++++++ +.|+|++++|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence 699999999999999888755 56766 57887632 2345667753 48999998 79999999995
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0031 Score=66.72 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=61.8
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc--------CC------cc-cCHHHhc-cccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT--------GV------GL-VSFEEAI-STADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~--------g~------~~-~~l~ell-~~aD~V~l~~Pl 256 (595)
+|+|||.|.+|..+|..|...|.+|..|+++.. .+...+. +. .. .++++.+ ..+|+|++++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 699999999999999999999999999998642 1111111 11 11 2466665 589999999994
Q ss_pred ChhccccccHHHHh-cCCCceEEEeccCCc
Q 046427 257 TPATSKMFNDEAFF-KMKKGVRIVNVARGG 285 (595)
Q Consensus 257 t~~t~~li~~~~l~-~mk~gailiN~arg~ 285 (595)
..+...+.. ... .++++..++.+..|=
T Consensus 82 -~~~~~~l~~-l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 82 -QQLRTICQQ-LQDCHLKKNTPILICSKGI 109 (326)
T ss_pred -HHHHHHHHH-HHHhcCCCCCEEEEEEcCe
Confidence 446655543 222 466777777776653
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0022 Score=67.30 Aligned_cols=93 Identities=23% Similarity=0.268 Sum_probs=67.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH-HHHH--c------CC------c-ccCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD-RARA--T------GV------G-LVSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~--~------g~------~-~~~l~ell~~aD~V~l~~Pl 256 (595)
++|.|+|.|.-|.++|..+..-|.+|..|.++.... .... . |+ . ..+++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 579999999999999999999999999887653211 0000 0 11 1 2379999999999999999
Q ss_pred ChhccccccHHHHhcCCCceEEEeccCCchh
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~arg~~v 287 (595)
+...+..+..- -..+++++++|+++.|=-.
T Consensus 81 s~~~r~v~~~l-~~~l~~~~~iv~~sKGie~ 110 (329)
T COG0240 81 SQALREVLRQL-KPLLLKDAIIVSATKGLEP 110 (329)
T ss_pred hHHHHHHHHHH-hhhccCCCeEEEEeccccC
Confidence 44455555432 2467899999999976433
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.002 Score=63.58 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=63.0
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC---c---HH--HHHHcC-----------------Cc--c---
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA---Q---AD--RARATG-----------------VG--L--- 237 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~---~---~~--~a~~~g-----------------~~--~--- 237 (595)
.|..++|+|+|+|.+|+.+|..|...|. ++..+|+.. + .. ...+.| +. .
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 4888999999999999999999999998 699988761 0 00 000111 11 0
Q ss_pred ----cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEe
Q 046427 238 ----VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 238 ----~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
.+++++++++|+|+-| ..+.+++.++.......++...++..
T Consensus 98 ~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 98 KITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 1245577888888888 46777888877777776776555553
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0024 Score=71.20 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=52.1
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHcCCcccCHHHh--ccccCEEEEeCCCC
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARATGVGLVSFEEA--ISTADFISLHMPLT 257 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~~l~el--l~~aD~V~l~~Plt 257 (595)
..+.+++++|+|.|.+|++++..+...|++|.++|++... +.+...+....+++++ +.++|+|+.|+|..
T Consensus 328 ~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 3577899999999999999999999999999999986522 2222333233333433 57899999999964
|
|
| >CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0022 Score=61.81 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=57.4
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v~~ 592 (595)
|.+-+..+|+||++.+|+.+|.++|+||.++.++.....+.+-+.+.++.. .-+++.++|.++-.+.+|..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~ 75 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQD 75 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEe
Confidence 677788899999999999999999999999999876666666666666654 34577888888877777654
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0039 Score=64.97 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=65.1
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcC----CCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGL----GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t 260 (595)
.+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++.+..++||+|+.++-.
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~~l~~~~~~ADIvIsAvGk---- 214 (297)
T PRK14167 151 AGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT------------DDLAAKTRRADIVVAAAGV---- 214 (297)
T ss_pred hCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 3567999999999996 5799999999865 78999875432 2578999999999999863
Q ss_pred cccccHHHHhcCCCceEEEeccCCc
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~ 285 (595)
.+++..+. .|+|+++||+|--.
T Consensus 215 p~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 215 PELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred cCccCHHH---cCCCCEEEEccccc
Confidence 45787765 58999999998544
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0041 Score=66.90 Aligned_cols=91 Identities=18% Similarity=0.275 Sum_probs=62.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC-------CEEEEECCCCc------HHHHHHc--------CCc-------ccCHHHhc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG-------MNVIAHDPYAQ------ADRARAT--------GVG-------LVSFEEAI 244 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~------~~~a~~~--------g~~-------~~~l~ell 244 (595)
++|+|||.|..|.++|..+..-| .+|..|.++.. .+...+. |+. ..++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 58999999999999999998544 78888866542 1111111 121 12688999
Q ss_pred cccCEEEEeCCCChhccccccHHHHh--cCCCceEEEeccCCc
Q 046427 245 STADFISLHMPLTPATSKMFNDEAFF--KMKKGVRIVNVARGG 285 (595)
Q Consensus 245 ~~aD~V~l~~Plt~~t~~li~~~~l~--~mk~gailiN~arg~ 285 (595)
++||+|++++| +...+.++.. .-. .+++++++|+++.|=
T Consensus 92 ~~aDiIvlAVP-sq~l~~vl~~-l~~~~~l~~~~~iIS~aKGI 132 (365)
T PTZ00345 92 EDADLLIFVIP-HQFLESVLSQ-IKENNNLKKHARAISLTKGI 132 (365)
T ss_pred hcCCEEEEEcC-hHHHHHHHHH-hccccccCCCCEEEEEeCCc
Confidence 99999999999 4445555433 222 466788999998773
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.005 Score=65.31 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=62.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHh-cCCC-EEEEECCCCcH--HHHHH----cCCcc---cCHHHhccccCEEEEeCCCChh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAK-GLGM-NVIAHDPYAQA--DRARA----TGVGL---VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~~----~g~~~---~~l~ell~~aD~V~l~~Plt~~ 259 (595)
..++++|||.|.+|+..++.+. .++. +|.+|+++... ..+.+ .|+.. .++++.+++||+|+.|+|..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 3578999999999999999987 4674 69999997632 22222 24432 36889999999999999853
Q ss_pred ccccccHHHHhcCCCceEEEecc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a 282 (595)
.-++..+. +|+|+.+..++
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeC
Confidence 35665543 68888766554
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0027 Score=57.17 Aligned_cols=88 Identities=19% Similarity=0.293 Sum_probs=54.7
Q ss_pred EEEEEeC-ChHHHHHHHHHhcC-CCEEEEE-CCCC-cHHHHHHcC--Cc-----ccCHHHh-ccccCEEEEeCCCChhcc
Q 046427 194 TLAVMGF-GKVGTEVARRAKGL-GMNVIAH-DPYA-QADRARATG--VG-----LVSFEEA-ISTADFISLHMPLTPATS 261 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~~-G~~V~~~-d~~~-~~~~a~~~g--~~-----~~~l~el-l~~aD~V~l~~Plt~~t~ 261 (595)
++||+|. |.+|+.+++.+... ++++.+. ++.. ........+ +. ..+.+++ ..++|+|++|+|.. .+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~-~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG-VSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH-HHH
Confidence 5899994 99999999999874 7777765 4322 111111111 11 1121222 25899999999954 344
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
..+. .....+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 4332 22445799999999983
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.006 Score=64.57 Aligned_cols=115 Identities=18% Similarity=0.191 Sum_probs=68.7
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCcHHHHHHc---------CC----cc-cCHHHhccccCEEEEeC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQADRARAT---------GV----GL-VSFEEAISTADFISLHM 254 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~---------g~----~~-~~l~ell~~aD~V~l~~ 254 (595)
+..++|+|||.|.+|..+|..+...| .++..||.+.....+..+ +. .. .+.+ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999988777 689999986532111111 11 11 2455 779999999999
Q ss_pred --CCChh-cc--------cccc--HHHHhcCCCceEEEeccCCchhcHHHHHHH--HhcCCeeEEE
Q 046427 255 --PLTPA-TS--------KMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRA--LDSGIISQAA 305 (595)
Q Consensus 255 --Plt~~-t~--------~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~a--L~~g~i~ga~ 305 (595)
|..+. ++ .++. .+.+....|.++++|++--.=+....+.+. +...++.|.+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 44331 11 1110 123444567888888853221223334443 2245666655
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.027 Score=61.51 Aligned_cols=107 Identities=24% Similarity=0.306 Sum_probs=72.1
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE-ECCC-------C-cHHHHHH----c-------CCcccCHHHh-cc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA-HDPY-------A-QADRARA----T-------GVGLVSFEEA-IS 245 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~-------~-~~~~a~~----~-------g~~~~~l~el-l~ 245 (595)
|.++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+ - +.+...+ . +.+.++.+++ ..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 4579999999999999999999999999999995 3432 1 2221111 1 1122344444 34
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.||+++-|. ..+.|+++....++ -.+|+-.+-+.+ ..++ .+.|.+..|
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~ea-~~~L~~rGI 328 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPEA-DEILRKKGV 328 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHHH-HHHHHHCCc
Confidence 799998875 56678888888775 457777777887 4443 466666655
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0055 Score=65.00 Aligned_cols=87 Identities=25% Similarity=0.204 Sum_probs=63.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHh-cCCC-EEEEECCCCcH--HHHH----HcCCc---ccCHHHhccccCEEEEeCCCChh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAK-GLGM-NVIAHDPYAQA--DRAR----ATGVG---LVSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~----~~g~~---~~~l~ell~~aD~V~l~~Plt~~ 259 (595)
..++++|||.|.+|+..++.+. ..+. +|.+||++... +.+. ..+++ +.++++++++||+|+.|+|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4678999999999999887765 4564 78889987632 2222 22443 337899999999999999954
Q ss_pred ccccccHHHHhcCCCceEEEeccCC
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg 284 (595)
.-++. +.+|+|+.++.++.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34454 446999999998753
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0036 Score=62.00 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=62.0
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH--HHHc-CCccc--C-HHHhccccCEEEEeCCCChhcc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR--ARAT-GVGLV--S-FEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~-g~~~~--~-l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.++.||++.|||-|.+|..-++.|..+|.+|.+++|....+. ..+. .+++. + -.+.+..+|+|+.++...+-
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l-- 82 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEEL-- 82 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH--
Confidence 468999999999999999999999999999999998764321 1222 33321 1 14557889998887654322
Q ss_pred ccccHHHHhcCCCceEEEecc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~a 282 (595)
|.......+.-.++||+.
T Consensus 83 ---n~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 83 ---NRRVAHAARARGVPVNVV 100 (205)
T ss_pred ---HHHHHHHHHHcCCEEEEC
Confidence 334444445555777764
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0082 Score=61.45 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=64.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcC---CCEEEE-ECCCCcHHHHHHcCCccc-CHHHh-ccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL---GMNVIA-HDPYAQADRARATGVGLV-SFEEA-ISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~---G~~V~~-~d~~~~~~~a~~~g~~~~-~l~el-l~~aD~V~l~~Plt~~t~~li~~ 266 (595)
++|||||+|.||+.+++.+..- ++++.+ |++...........+..+ +++++ ....|+|+=|..- ...+..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~-~av~e~--- 78 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQ-QAIAEH--- 78 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCH-HHHHHH---
Confidence 5899999999999999998743 355444 666542221111224433 69997 5889999999863 222222
Q ss_pred HHHhcCCCceEEEeccCCchhc---HHHHHHHHhc
Q 046427 267 EAFFKMKKGVRIVNVARGGVVD---EEALVRALDS 298 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd---~~aL~~aL~~ 298 (595)
-..-++.|.-++=.|-|.+.| .+.|.++.+.
T Consensus 79 -~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 79 -AEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred -HHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 222356777777788888887 4455554443
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.012 Score=58.76 Aligned_cols=106 Identities=29% Similarity=0.289 Sum_probs=67.5
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE-ECCCC----------cHH-HHHHc-CCcc------cCHHHhc-ccc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA-HDPYA----------QAD-RARAT-GVGL------VSFEEAI-STA 247 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~----------~~~-~a~~~-g~~~------~~l~ell-~~a 247 (595)
.+|.|+++.|.|+|++|+.+|+.|...|.+|++ .|.+. ... ...+. ++.. .+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 368999999999999999999999999997666 45433 111 11111 1211 1223443 379
Q ss_pred CEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 248 D~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
|+++-|.+ .+.|+.+....++ -.+++-.+-+++-+ ++ .+.|.+..+
T Consensus 99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~-~a-~~~L~~~Gi 144 (217)
T cd05211 99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD-EA-LRILHERGI 144 (217)
T ss_pred cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH-HH-HHHHHHCCc
Confidence 99999886 3467877777776 34666666767644 33 444444433
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0059 Score=47.22 Aligned_cols=66 Identities=11% Similarity=0.360 Sum_probs=49.3
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCC---cHHHHHHHhcCCCcceEE
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEP---SREVLKKIGETPAIEEFV 591 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~---~~e~l~~L~~~~~v~~v~ 591 (595)
-+...|+||.++.+.+.|+++++||.++...... ++.+.+.+.++.+- -..+++.|+.+++|..+.
T Consensus 2 ~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 2 RVEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred EEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 3567899999999999999999999999886433 34455555554332 237788899999887653
|
ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0071 Score=64.16 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=61.3
Q ss_pred CCEEEEEeCChHHHHHHHHHh-cCCC-EEEEECCCCcH-H-HHHH----cCC--c-ccCHHHhccccCEEEEeCCCChhc
Q 046427 192 GKTLAVMGFGKVGTEVARRAK-GLGM-NVIAHDPYAQA-D-RARA----TGV--G-LVSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~-~-~a~~----~g~--~-~~~l~ell~~aD~V~l~~Plt~~t 260 (595)
-+++||||.|.+|+..++.+. ..+. +|.+||++... + .+.+ .++ . ..+++++++ +|+|++|+|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 368999999999999999887 3455 57779998632 2 2222 243 2 237889987 99999999953
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
.-++..+. +|+|+.+..++.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 45666554 589999888874
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.003 Score=58.76 Aligned_cols=108 Identities=15% Similarity=0.217 Sum_probs=73.3
Q ss_pred EEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc--------------C-HHHhccccCEEEEeCCCChh
Q 046427 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV--------------S-FEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~--------------~-l~ell~~aD~V~l~~Plt~~ 259 (595)
|+|+|.|.||.-+|.+|+..|.+|..+++....+...+.|+... . ..+....+|+|++|+... +
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence 68999999999999999999999999988653343445554221 1 124677899999999743 4
Q ss_pred ccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEE
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAA 305 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~ 305 (595)
+...+.. .-..+++++.++-.--| +-.++.+.+.+...++.++.
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 5555544 44456676666655444 44577777777666765543
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.032 Score=61.36 Aligned_cols=108 Identities=24% Similarity=0.314 Sum_probs=74.7
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE--------ECCCC-cHHHH------H------------Hc-CCccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA--------HDPYA-QADRA------R------------AT-GVGLV 238 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a------~------------~~-g~~~~ 238 (595)
|.+|.|+||.|-|+|++|+..|+.|..+|++|++ ||+.- +.+.. + .. +.+.+
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 4579999999999999999999999999999999 88653 32210 0 11 33444
Q ss_pred CHHHhcc-ccCEEEEeCCCChhccccccHHHHhcCC--CceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 239 SFEEAIS-TADFISLHMPLTPATSKMFNDEAFFKMK--KGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 239 ~l~ell~-~aD~V~l~~Plt~~t~~li~~~~l~~mk--~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+-++++. .||+++-|. +.+.|+.+....+. +-.+|+-.+-+ .+..++ .+.|.+..|
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI 361 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQ 361 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCC
Confidence 5555554 599998775 67888888777772 23466666666 455554 355555544
|
|
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0083 Score=56.31 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=57.3
Q ss_pred cCccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCC----cHHHHHHHhcCCCcceEEEEe
Q 046427 519 LEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEP----SREVLKKIGETPAIEEFVFLK 594 (595)
Q Consensus 519 ~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~----~~e~l~~L~~~~~v~~v~~i~ 594 (595)
+.--.|.+...|+||+++.|.+.|+++++||..++..... ++.+-+.+.++..- =.+++++|+++++|.+|.++-
T Consensus 67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~-~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPL-QGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCC-CCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3445667788999999999999999999999999874322 34555555554432 238999999999999998863
|
|
| >cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0058 Score=50.33 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=39.3
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcH-HHHHHHh
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSR-EVLKKIG 582 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~-e~l~~L~ 582 (595)
+-+.-+|+||++..|++.|+++++||.+++.......=...+.++++...+. ++.+.|.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~ 61 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLL 61 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHH
Confidence 4467799999999999999999999999975443322223344555554333 3333343
|
The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0064 Score=50.42 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=42.4
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeec----CCCcEEEEEEcCCC--CcH-HHHHHHhcC
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIA----PQKQAVMTIGVDEE--PSR-EVLKKIGET 584 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~----~g~~al~vi~~d~~--~~~-e~l~~L~~~ 584 (595)
+.+..+|+||++++|++.|+++++||.+++..... ..+.-.+.++++-+ .+. ++.+.|+++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999999999996543 22334445555444 333 555555544
|
This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in |
| >cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0055 Score=50.18 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=38.3
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~ 572 (595)
+.+..+|+||++.+|++.|.++|+||.+++......++.-.+.++++-+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~ 50 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE 50 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC
Confidence 4567899999999999999999999999998754444444555555544
|
This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0079 Score=63.74 Aligned_cols=44 Identities=34% Similarity=0.478 Sum_probs=38.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGV 235 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~ 235 (595)
|++|+|+|+|-.|..-.+.++++|++|+++|+... .+.++++|.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA 211 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA 211 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC
Confidence 88999999999999999999999999999999873 456777775
|
|
| >cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0047 Score=51.30 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=36.1
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD 570 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d 570 (595)
.|.+.-+|+||+++.|++.|+++|.||.+++... .++.-.|++.++
T Consensus 3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~ 48 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVE 48 (77)
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEE
Confidence 3556789999999999999999999999999976 333445544444
|
This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0086 Score=63.28 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=63.6
Q ss_pred CCEEEEEeCChHHHHHHHHHhc-CC-CEEEEECCCCcH-H-H---HHHcCCcc---cCHHHhccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKG-LG-MNVIAHDPYAQA-D-R---ARATGVGL---VSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~-~---a~~~g~~~---~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
-++++|||.|..++.-++.+.. +. -+|.+||++... + . ..+.++.. .+.++++++||+|+.|+|. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence 4689999999999999888763 33 479999998632 2 1 12224432 3789999999999999873 45
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
-+++.+. +|||+.|+.+|.
T Consensus 205 P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred ceeCHHH---cCCCcEEEecCC
Confidence 6676554 689999998874
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0074 Score=59.87 Aligned_cols=92 Identities=16% Similarity=0.297 Sum_probs=62.6
Q ss_pred EEEEEeCChHHHHHHHHHhcC--CCE-EEEECCCCcHHH--HHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGL--GMN-VIAHDPYAQADR--ARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~--G~~-V~~~d~~~~~~~--a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
+|||||+|.||+.+.+.++.- .++ +.+||+...... +...+.. ..+++|++++.|+++=|.. .+..+.+.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~~--- 77 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREYV--- 77 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHHh---
Confidence 699999999999999999843 454 777998764332 2233322 3479999999999998885 23333332
Q ss_pred HHhcCCCceEEEeccCCchhcHH
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEE 290 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~ 290 (595)
.+.||.|.=++=+|-|.+.|+.
T Consensus 78 -~~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 78 -PKILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred -HHHHhcCCCEEEEechhccChH
Confidence 3335666666666668887544
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.007 Score=57.45 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=50.7
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC-Cccc--CH-HHhccccCEEEEeCCC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG-VGLV--SF-EEAISTADFISLHMPL 256 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g-~~~~--~l-~ell~~aD~V~l~~Pl 256 (595)
..+|.|+++.|||-|.+|...++.|...|.+|.+++|....+.. +++ +.+. .+ ++-+.++|+|+.++..
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~-~l~~i~~~~~~~~~~dl~~a~lViaaT~d 80 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMK-ELPYITWKQKTFSNDDIKDAHLIYAATNQ 80 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHH-hccCcEEEecccChhcCCCceEEEECCCC
Confidence 45899999999999999999999999999999999886644332 232 2211 11 2346778888887753
|
|
| >cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0079 Score=48.30 Aligned_cols=62 Identities=18% Similarity=0.346 Sum_probs=45.7
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC-CcHHHHHHHhc
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE-PSREVLKKIGE 583 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~-~~~e~l~~L~~ 583 (595)
+.+-+.-+|+||.++++.++|+++++||.++...+...+..+..++.++.+ -.+.+.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHH
Confidence 456678899999999999999999999999987765333345556666532 23466666665
|
The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.01 Score=62.98 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=58.2
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
.+.||++.|||.|.||+.+|+.|...|. +|++.+|........... ...-+...++|+|+.|.--|......+..+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~---~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVV---REELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhh---hhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence 5899999999999999999999999995 699999875321111000 011245679999998743233334445555
Q ss_pred HHhcCCCceEEEecc
Q 046427 268 AFFKMKKGVRIVNVA 282 (595)
Q Consensus 268 ~l~~mk~gailiN~a 282 (595)
.++..++ -+++|.+
T Consensus 248 ~~~~~~~-r~~iDLA 261 (338)
T PRK00676 248 SLADIPD-RIVFDFN 261 (338)
T ss_pred HHhhccC-cEEEEec
Confidence 5543322 2666665
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0093 Score=64.60 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=63.8
Q ss_pred CCEEEEEeCChHHHHHHHHHhc-CC--CEEEEECCCCcH--HHHH----Hc-C---Ccc-cCHHHhccccCEEEEeCCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKG-LG--MNVIAHDPYAQA--DRAR----AT-G---VGL-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~-~G--~~V~~~d~~~~~--~~a~----~~-g---~~~-~~l~ell~~aD~V~l~~Plt 257 (595)
-++++|||.|..++.-++.+.. +. -+|.+||++... ..+. .. + +.. .+.++++++||+|+.|++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4689999999999999988775 42 389999998632 1111 11 2 222 37999999999999999854
Q ss_pred h---hccccccHHHHhcCCCceEEEeccC
Q 046427 258 P---ATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 258 ~---~t~~li~~~~l~~mk~gailiN~ar 283 (595)
. .+.-++..+. +|+|+.|+.++.
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~ 260 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAA 260 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCc
Confidence 3 2346666554 689998877655
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0064 Score=64.16 Aligned_cols=90 Identities=28% Similarity=0.278 Sum_probs=53.9
Q ss_pred CEEEEEeCChHHHHHHHHHhc-CCC-EEEEECCCCc-H-HH---HHHcCCcc---cCHHHhccccCEEEEeCCCChhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKG-LGM-NVIAHDPYAQ-A-DR---ARATGVGL---VSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~-~-~~---a~~~g~~~---~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
+++||||.|..|+.-++.+.. ++. +|.+|+++.. . .. ..+.++.. .+.++++++||+|+.|+|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999999988763 554 7999999862 1 11 12234432 37999999999999999854432 5
Q ss_pred cccHHHHhcCCCceEEEeccCCch
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~ 286 (595)
+++.+ .+|+|+.|+.++....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 66654 4689999998886443
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.017 Score=62.26 Aligned_cols=108 Identities=27% Similarity=0.362 Sum_probs=76.6
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc---------H-----------HHHHHcCCcccCHHHhcc-
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ---------A-----------DRARATGVGLVSFEEAIS- 245 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~---------~-----------~~a~~~g~~~~~l~ell~- 245 (595)
+..+.|+||.|=|+|++|+..|+.+...|.+|+++|.... . ......+.+.++-++++.
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~ 281 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV 281 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence 4459999999999999999999999999999998764332 0 111222344555577765
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.||+.+=|. +.+.|+.+....+|-. +++-.+-+++- .++--..++.|-+
T Consensus 282 ~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erGIl 330 (411)
T COG0334 282 DCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERGIL 330 (411)
T ss_pred cCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCCCE
Confidence 699887664 6788888888888766 78888888874 4443333455544
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.012 Score=62.53 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=61.5
Q ss_pred cCCEEEEEeCChHHHHHHHHHhc-CC-CEEEEECCCCcH-H-HHH----HcCCc---ccCHHHhccccCEEEEeCCCChh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKG-LG-MNVIAHDPYAQA-D-RAR----ATGVG---LVSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~-~a~----~~g~~---~~~l~ell~~aD~V~l~~Plt~~ 259 (595)
..++++|||.|.+|+..+..+.. .+ -+|.+|+++... + .+. ..|+. ..++++++++||+|+.++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 35789999999999998888874 55 479999987632 2 222 12443 247899999999999999853
Q ss_pred ccccccHHHHhcCCCceEEEecc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a 282 (595)
.-++..+. +++|+.+..++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 45665543 57887766554
|
|
| >cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.008 Score=48.90 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=43.6
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeec-CCCcEEEEEEcCCCCc---HHHHHHHhcC
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIA-PQKQAVMTIGVDEEPS---REVLKKIGET 584 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~-~g~~al~vi~~d~~~~---~e~l~~L~~~ 584 (595)
+-+.-+|+||.++.++++|+++|+||-.+...|.. ..+.....+.++...+ +++++.|++.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCc
Confidence 34567899999999999999999999999887752 2233445555544434 3677777554
|
This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.011 Score=60.07 Aligned_cols=106 Identities=29% Similarity=0.420 Sum_probs=70.4
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEE--------CCCC-cHHH----HHHcCC--c-----------ccCHH-
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--------DPYA-QADR----ARATGV--G-----------LVSFE- 241 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~--------d~~~-~~~~----a~~~g~--~-----------~~~l~- 241 (595)
++.|+++.|-|+|.+|+.+|+.|...|++|++. ||.. +.+. ..+.+. . +.+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 599999999999999999999999999998875 6543 2211 112222 1 11222
Q ss_pred Hhc-cccCEEEEeCCCChhccccccHHHHh-cCCCceEEEe-ccCCchhcHHHHHHHHhcCCe
Q 046427 242 EAI-STADFISLHMPLTPATSKMFNDEAFF-KMKKGVRIVN-VARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 242 ell-~~aD~V~l~~Plt~~t~~li~~~~l~-~mk~gailiN-~arg~~vd~~aL~~aL~~g~i 301 (595)
+++ .+||+++.|. ..+.|+.+... .++.++.+|- .+-+.+ ..++.. .|++..|
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI 164 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGI 164 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCC
Confidence 566 5899999984 46678888777 7776665554 445555 455544 6666655
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0079 Score=47.91 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=43.9
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeec---CCCcEEEEEEcCCCCcH---HHHHHHhc
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIA---PQKQAVMTIGVDEEPSR---EVLKKIGE 583 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~---~g~~al~vi~~d~~~~~---e~l~~L~~ 583 (595)
.+.-+|+||.++.|.+.++++++||.++...+.. ..+.+.+.+.++-.-.+ +++++|++
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 3566899999999999999999999999886543 24556666666543323 67777765
|
This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.013 Score=62.05 Aligned_cols=86 Identities=26% Similarity=0.321 Sum_probs=64.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhc-CCC-EEEEECCCCcH-H-HH----HHcCC--cc-cCHHHhccccCEEEEeCCCChhc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKG-LGM-NVIAHDPYAQA-D-RA----RATGV--GL-VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a----~~~g~--~~-~~l~ell~~aD~V~l~~Plt~~t 260 (595)
-++++|||.|..++.-++.++. |+. +|.+|+++... + .+ .+.+. .. .+.+++++.||+|+.|+|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 3589999999999999998884 554 79999998632 2 12 12222 22 378999999999999999654
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
-++..+. +|||+.|..++.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 6666654 579999998884
|
|
| >cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.013 Score=47.85 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=45.5
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC----CCCcHHHHHHHhc
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD----EEPSREVLKKIGE 583 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d----~~~~~e~l~~L~~ 583 (595)
..+.+..+|+||++++|+.+|.++++||....+... ++..+.++.+. ++.+++.++++++
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~--~~~~~d~f~v~~~~~~~~~~~~~~~l~~ 65 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ--GDMAVNVFYVTDANGNPVDPKTIEAVRQ 65 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC--CCeEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 356778899999999999999999999999988754 34676666652 2345566666654
|
This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.017 Score=60.67 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=61.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhc-CCC-EEEEECCCCcH--HHHHH----cCCc--c-cCHHHhccccCEEEEeCCCChhc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKG-LGM-NVIAHDPYAQA--DRARA----TGVG--L-VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~--~~a~~----~g~~--~-~~l~ell~~aD~V~l~~Plt~~t 260 (595)
-+++||||.|..|+.-++.+.. +.. +|.+||++... ..+.+ .|+. . .+.++++++||+|+.++|. +
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~ 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence 4789999999999988887764 444 79999998632 22211 2432 2 3799999999999999884 3
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
.-++..+. +|||+.+.-++.
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGS 213 (301)
T ss_pred CcEecHHH---cCCCceEEecCC
Confidence 46666553 578866655543
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.061 Score=56.82 Aligned_cols=104 Identities=14% Similarity=0.069 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcH--------HH-----------HHHcC-------------Cccc-C--HHHhcccc
Q 046427 203 VGTEVARRAKGLGMNVIAHDPYAQA--------DR-----------ARATG-------------VGLV-S--FEEAISTA 247 (595)
Q Consensus 203 IG~~vA~~l~~~G~~V~~~d~~~~~--------~~-----------a~~~g-------------~~~~-~--l~ell~~a 247 (595)
||..+|..+...|++|..||++... +. ..+.| ++.. + +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 6889999999999999999987621 10 11112 1122 2 55789999
Q ss_pred CEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCC
Q 046427 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFT 310 (595)
Q Consensus 248 D~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~ 310 (595)
|+|+-|+|...+.+.-+-.+..+.++++++|... .+.+....|.+.++. .++ .++.-|.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSn--tS~~~~~~la~~~~~p~r~--~g~Hf~~ 140 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAST--TSTFLVTDLQRHVAHPERF--LNAHWLN 140 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEc--cccCCHHHHHhhcCCcccE--EEEecCC
Confidence 9999999999998888877777889999999443 444566677776642 344 4444443
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0054 Score=55.31 Aligned_cols=85 Identities=20% Similarity=0.364 Sum_probs=51.6
Q ss_pred EEEEEe-CChHHHHHHHHHhc-CCCEEEE-ECCCC-c-HHHHHHc----CCc---ccC-HHHhccccCEEEEeCCCChhc
Q 046427 194 TLAVMG-FGKVGTEVARRAKG-LGMNVIA-HDPYA-Q-ADRARAT----GVG---LVS-FEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 194 tvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~-~-~~~a~~~----g~~---~~~-l~ell~~aD~V~l~~Plt~~t 260 (595)
+|+||| .|.+|+.+.++|.. ..+++.. +++.. . ....... +.. ..+ -.+.+.++|+|++|+|. ..+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~-~~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH-GAS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH-HHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch-hHH
Confidence 689999 99999999999985 4566554 33332 1 1111111 111 111 22445999999999994 323
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
..+..+ + +++|+.+||.+.
T Consensus 80 ~~~~~~--~--~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KELAPK--L--LKAGIKVIDLSG 98 (121)
T ss_dssp HHHHHH--H--HHTTSEEEESSS
T ss_pred HHHHHH--H--hhCCcEEEeCCH
Confidence 333322 1 578999999984
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.023 Score=63.02 Aligned_cols=108 Identities=21% Similarity=0.243 Sum_probs=70.3
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH------HHHHHcCCccc---CHHHhccccCEEEEeCCCChhc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA------DRARATGVGLV---SFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t 260 (595)
+.+++++|+|+|..|.++|+.|+..|++|.++|..... ....+.|+... ...+.+.++|+|+.. |--+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 66899999999999999999999999999999976421 22445576543 234556889999886 543322
Q ss_pred ccc-----------ccHH-HH-hcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 261 SKM-----------FNDE-AF-FKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 261 ~~l-----------i~~~-~l-~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.-. +++- .+ ...+.-.+-|--+.|+.-..+-+...|+.
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 222 2221 12 22232355555557887666666666654
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.018 Score=59.29 Aligned_cols=102 Identities=23% Similarity=0.289 Sum_probs=60.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEEE-ECCCCcHHH-HHHc--CCcc-cCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVIA-HDPYAQADR-ARAT--GVGL-VSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~-a~~~--g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
.+|||||+|.||+.+++.+... ++++.+ +++...... .... ++.. .+++++-.+.|+|+.|.|... ...+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~-~~e~--- 77 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAA-LKEH--- 77 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHH-HHHH---
Confidence 4799999999999999999865 566543 343322221 1112 3333 378888556999999998432 2222
Q ss_pred HHHhcCCCceEEEeccCCchhcH---HHHHHHHhcC
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDE---EALVRALDSG 299 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~---~aL~~aL~~g 299 (595)
....++.|.-++-.+-|.+.|. +.|.++.+++
T Consensus 78 -~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~ 112 (265)
T PRK13303 78 -VVPILKAGIDCAVISVGALADEALRERLEQAAEAG 112 (265)
T ss_pred -HHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHC
Confidence 2223455555554444544443 4466665554
|
|
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0052 Score=50.86 Aligned_cols=59 Identities=17% Similarity=0.306 Sum_probs=39.4
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhc
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGE 583 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~ 583 (595)
-+.-+|+||+++.|++.|.++|.||.+++..+....=..++.++.+..-.+++.+.|++
T Consensus 6 tv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~ 64 (76)
T PF13740_consen 6 TVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEE 64 (76)
T ss_dssp EEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHH
T ss_pred EEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHH
Confidence 34579999999999999999999999999987654444455566663322244444443
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.016 Score=60.37 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=50.3
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcC-----Ccc---cCHHHhccccCEEEEeCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATG-----VGL---VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g-----~~~---~~l~ell~~aD~V~l~~Pl 256 (595)
.+.+|++.|+|.|..|++++..|...|. +|..+|++... ..+...+ ... .++.+.++++|+|+.|+|.
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~ 202 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT 202 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence 3567999999999999999999999997 79999997532 2222211 111 1345577889999999885
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.022 Score=62.30 Aligned_cols=89 Identities=24% Similarity=0.316 Sum_probs=64.2
Q ss_pred eecCCEEEEEeC----------ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCCh
Q 046427 189 SLVGKTLAVMGF----------GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 189 ~l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~ 258 (595)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||..........+ ...++++.+++||.|+++++ .+
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~ad~~v~~t~-~~ 387 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-LIDDLEEALKGADALVILTD-HD 387 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcc-cCCCHHHHHhCCCEEEEecC-CH
Confidence 589999999998 3467789999999999999999987543322222 13478899999999999998 44
Q ss_pred hccccccHHHHh-cCCCceEEEec
Q 046427 259 ATSKMFNDEAFF-KMKKGVRIVNV 281 (595)
Q Consensus 259 ~t~~li~~~~l~-~mk~gailiN~ 281 (595)
+-+. ++-+.+. .|+ ..+++|+
T Consensus 388 ~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 388 EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 4443 3444444 354 4578874
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.095 Score=55.15 Aligned_cols=98 Identities=24% Similarity=0.245 Sum_probs=66.0
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-ChHHHHHHHHHhc
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-GKVGTEVARRAKG 213 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~~ 213 (595)
+...+++|.|.-+....++ .+++=++.+.++ .| .+.|++|+++|= +++.++++..+..
T Consensus 116 a~~~~vPVINag~~~~HPt--QaL~Dl~Ti~e~------------------~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~ 174 (304)
T PRK00779 116 AEYSTVPVINGLTDLSHPC--QILADLLTIYEH------------------RG-SLKGLKVAWVGDGNNVANSLLLAAAL 174 (304)
T ss_pred HHhCCCCEEeCCCCCCChH--HHHHHHHHHHHH------------------hC-CcCCcEEEEEeCCCccHHHHHHHHHH
Confidence 4456789999865433332 222222333221 12 377899999998 7899999999999
Q ss_pred CCCEEEEECCCC--c-HHH----HHHcCCc---ccCHHHhccccCEEEEe
Q 046427 214 LGMNVIAHDPYA--Q-ADR----ARATGVG---LVSFEEAISTADFISLH 253 (595)
Q Consensus 214 ~G~~V~~~d~~~--~-~~~----a~~~g~~---~~~l~ell~~aD~V~l~ 253 (595)
+|++|....|.. . .+. +++.|.. ..++++++++||+|..-
T Consensus 175 ~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 175 LGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD 224 (304)
T ss_pred cCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 999999988753 1 121 3445642 24899999999999874
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.021 Score=61.06 Aligned_cols=88 Identities=25% Similarity=0.294 Sum_probs=60.7
Q ss_pred CCEEEEEeCChHHHHHHHHHh-cCCC-EEEEECCCCcH--HHH---HHcCCc--c-cCHHHhccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAK-GLGM-NVIAHDPYAQA--DRA---RATGVG--L-VSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a---~~~g~~--~-~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
-++++|||.|..++.-++.+. -+.. +|.+|+++... ..+ .+.++. . .++++++++||+|+.++|.+. ..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence 368999999999998887665 4444 79999988632 111 222432 2 379999999999999998432 22
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
-++..+ .+|+|+.|.-++.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 455554 3588987666653
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.12 Score=54.27 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=50.7
Q ss_pred eecCCEEEEEeCC---hHHHHHHHHHhcCCCEEEEECCCC---cH---HHHHHcCCc---ccCHHHhccccCEEEE
Q 046427 189 SLVGKTLAVMGFG---KVGTEVARRAKGLGMNVIAHDPYA---QA---DRARATGVG---LVSFEEAISTADFISL 252 (595)
Q Consensus 189 ~l~gktvGIIGlG---~IG~~vA~~l~~~G~~V~~~d~~~---~~---~~a~~~g~~---~~~l~ell~~aD~V~l 252 (595)
.+.|++|+++|-| ++.++++..+..||++|....|.. +. +.+++.|.. ..++++.++.||+|..
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt 222 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYV 222 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEE
Confidence 3789999999995 999999999999999999987743 21 223344653 2489999999999987
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.034 Score=61.99 Aligned_cols=101 Identities=23% Similarity=0.290 Sum_probs=70.7
Q ss_pred eecCCEEEEEeC----------ChHHHHHHHHHhcCCCEEEEECCCCcHHHHH-Hc----------------------CC
Q 046427 189 SLVGKTLAVMGF----------GKVGTEVARRAKGLGMNVIAHDPYAQADRAR-AT----------------------GV 235 (595)
Q Consensus 189 ~l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~-~~----------------------g~ 235 (595)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||........ .. ++
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 589999999998 4467789999999999999999986443221 11 11
Q ss_pred ccc-CHHHhccccCEEEEeCCCChhccccccHHH-HhcCCCceEEEeccCCchhcHHHHH
Q 046427 236 GLV-SFEEAISTADFISLHMPLTPATSKMFNDEA-FFKMKKGVRIVNVARGGVVDEEALV 293 (595)
Q Consensus 236 ~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~-l~~mk~gailiN~arg~~vd~~aL~ 293 (595)
+.+ ++.+.+++||+|+++++ .++.+.+ +-+. ...|++..+|+|+ |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~-~~ef~~l-~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTE-WDEFKTL-DYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCC-ChHhccc-CHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 222 56789999999999998 4445443 4333 4557766688995 53 44665543
|
|
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.11 Score=55.23 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=64.9
Q ss_pred eecCCEEEEEeCC--hHHHHHHHHHhcCCCEEEEECCCC--cHH--------HHHHcCCc---ccCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGFG--KVGTEVARRAKGLGMNVIAHDPYA--QAD--------RARATGVG---LVSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~~~--------~a~~~g~~---~~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||=+ ++.++++..+..+|++|....|.. ..+ .+.+.|.. ..++++.+++||+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 678888999999999999988753 111 12334542 24899999999999873
Q ss_pred C----CCChh---------ccccccHHHHhcC-CCceEEEecc
Q 046427 254 M----PLTPA---------TSKMFNDEAFFKM-KKGVRIVNVA 282 (595)
Q Consensus 254 ~----Plt~~---------t~~li~~~~l~~m-k~gailiN~a 282 (595)
+ ....+ ....++.+.++.. |++++|.-|.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 2 10000 1233566777765 6788888775
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.016 Score=57.16 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=33.2
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|.+++|.|||+|.+|+.+|+.|...|. ++..+|+.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 5899999999999999999999999997 78888875
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.015 Score=62.20 Aligned_cols=96 Identities=16% Similarity=0.268 Sum_probs=61.0
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcC-CCEEEE-ECCCCc--HHHHHHc----C-----CcccCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGL-GMNVIA-HDPYAQ--ADRARAT----G-----VGLVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~--~~~a~~~----g-----~~~~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+|+|. |.+|+.+++.+..+ +.++.. +++... ....... + +...+.++++.++|+|++|+|. .
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~-~ 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPH-G 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCc-h
Confidence 47999998 99999999999977 678774 464331 1111111 1 1122556777789999999994 3
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhcHHHHH
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~ 293 (595)
....+..+ ..+.|+.+||.|..--.+..+++
T Consensus 80 ~s~~~~~~----~~~~G~~VIDlS~~fR~~~~~~y 110 (346)
T TIGR01850 80 VSAELAPE----LLAAGVKVIDLSADFRLKDPEVY 110 (346)
T ss_pred HHHHHHHH----HHhCCCEEEeCChhhhcCChhhh
Confidence 34433322 13578999999854444533333
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.013 Score=58.90 Aligned_cols=64 Identities=30% Similarity=0.360 Sum_probs=46.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH--cCCccc--------CHHHh-ccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA--TGVGLV--------SFEEA-ISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~--~g~~~~--------~l~el-l~~aD~V~l~~Pl 256 (595)
+++.|+|+|++|+.+|+.|...|++|+..|.+... ....+ .++..+ .|.++ +.++|+++.++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 57999999999999999999999999999987632 22112 332211 25555 6778888877764
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.02 Score=58.77 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=70.2
Q ss_pred EEEEeC-ChHHHHHHHHHhcCC----CEEEEECCCCcH--HHHH-------Hc-C--Ccc-cCHHHhccccCEEEEeCCC
Q 046427 195 LAVMGF-GKVGTEVARRAKGLG----MNVIAHDPYAQA--DRAR-------AT-G--VGL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 195 vGIIGl-G~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~a~-------~~-g--~~~-~~l~ell~~aD~V~l~~Pl 256 (595)
|+|||. |.+|..+|..+...| .++..||.+... .... .. . +.. .++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999988777 789999976521 1111 11 1 111 2567999999999996521
Q ss_pred C--h---------hcccccc--HHHHhcCCCceEEEeccCCchhc--HHHHHHH--HhcCCeeEEE-Eec
Q 046427 257 T--P---------ATSKMFN--DEAFFKMKKGVRIVNVARGGVVD--EEALVRA--LDSGIISQAA-LDV 308 (595)
Q Consensus 257 t--~---------~t~~li~--~~~l~~mk~gailiN~arg~~vd--~~aL~~a--L~~g~i~ga~-lDv 308 (595)
. + .+..++. .+.+....|.++++|++ ..+| ...+.+. +...++.|.+ +|.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 1 0 1111111 12344456899999995 4444 3344444 4666788887 775
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.028 Score=51.08 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=57.6
Q ss_pred EEEEEeC-ChHHHHHHHHHhc-CCCEEEE-ECCCCcH----HHHH-----HcCCcc-cCHHHhccccCEEEEeCCCChhc
Q 046427 194 TLAVMGF-GKVGTEVARRAKG-LGMNVIA-HDPYAQA----DRAR-----ATGVGL-VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~----~~a~-----~~g~~~-~~l~ell~~aD~V~l~~Plt~~t 260 (595)
+|+|+|+ |+||+.+++.+.. -++++.+ +|+..+. +... ..++.. .++++++.++|+++-.. +|+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~ 79 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA 79 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence 7999999 9999999999996 7888665 5665411 1111 223332 37999999999998877 4433
Q ss_pred cccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
..-.-+.. ++.|.-+|-...|---.+.+.++.+.+
T Consensus 80 ~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 80 VYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred hHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 22211222 344666666556654333344444433
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0076 Score=51.21 Aligned_cols=49 Identities=27% Similarity=0.234 Sum_probs=38.3
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~ 572 (595)
+.+.+..+|+||+++.|++.|+++|+||.+++... .++.-.+.+.++-+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~--~~~~f~~~~~v~~~ 50 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI--MDGYFTMIMIVDIS 50 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh--hCCccEEEEEEEeC
Confidence 35667789999999999999999999999998864 34555655555543
|
This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.062 Score=57.77 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=88.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC---------------------Ccc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG---------------------VGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g---------------------~~~-~~l~ell~~aD~V 250 (595)
++|.|+|.|-+|...+..+..+|++|+.+|.....-.....| ... .+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 479999999999999999999999999998654221111111 111 2678899999999
Q ss_pred EEeCCCChhccccccH--------HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe-cCCCCCCCCCcccc
Q 046427 251 SLHMPLTPATSKMFND--------EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD-VFTEEPPAKDSKLV 321 (595)
Q Consensus 251 ~l~~Plt~~t~~li~~--------~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD-v~~~EP~~~~~~L~ 321 (595)
++|+|..+.-.+-++. +....++..+++|+=|+-.+=..+.+.+-+....-.. -.+ +|.+|=+-..+-+.
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY 159 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence 9999955443444432 3445677779999998866655555555444332211 222 25556554333333
Q ss_pred c---CCcEEEcCCCCCCcHH
Q 046427 322 L---HENVTVTPHLGASTTE 338 (595)
Q Consensus 322 ~---~~nvilTPHi~~~t~e 338 (595)
+ -++++ +|..+++
T Consensus 160 D~~~PdRIV----iG~~~~~ 175 (414)
T COG1004 160 DFLYPDRIV----IGVRSER 175 (414)
T ss_pred hccCCCeEE----EccCChh
Confidence 3 34554 4555554
|
|
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.054 Score=59.58 Aligned_cols=108 Identities=21% Similarity=0.218 Sum_probs=67.0
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE-ECCC-------C-cHHHH------HH-------------cCCccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA-HDPY-------A-QADRA------RA-------------TGVGLV 238 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~-------~-~~~~a------~~-------------~g~~~~ 238 (595)
+.+|.|||+.|=|+|++|+..|+.|..+|.+|++ .|.+ - +.+.. ++ .+.+++
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 4579999999999999999999999999999994 3433 1 11111 00 022333
Q ss_pred CHHHhc-cccCEEEEeCCCChhccccccHHHHhcC-CCceEEEecc-CCchhcHHHHHHHHhcCCe
Q 046427 239 SFEEAI-STADFISLHMPLTPATSKMFNDEAFFKM-KKGVRIVNVA-RGGVVDEEALVRALDSGII 301 (595)
Q Consensus 239 ~l~ell-~~aD~V~l~~Plt~~t~~li~~~~l~~m-k~gailiN~a-rg~~vd~~aL~~aL~~g~i 301 (595)
+-++++ -.||+.+-|. +.+.|+.+....+ +.++.+|--+ -+.+ ..+| .+.|.+..|
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~eA-~~~L~~~GI 370 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIEA-THLFKKNGV 370 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHHH-HHHHHHCCc
Confidence 333444 3688887775 5677777766655 4455555444 4444 4443 344554444
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.034 Score=58.43 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=57.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHH--HHHc-------CC--cc-cCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADR--ARAT-------GV--GL-VSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~-------g~--~~-~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+|||.|.+|+.+|..+...| .++..+|++..... +.++ +. .. ..-.+.+++||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 47999999999999999999888 48999998763221 1111 11 11 122345789999999987532
Q ss_pred h---cc-ccc--c-------HHHHhcCCCceEEEecc
Q 046427 259 A---TS-KMF--N-------DEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 259 ~---t~-~li--~-------~~~l~~mk~gailiN~a 282 (595)
. ++ +++ | ...+....|.+++++++
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 1 11 111 0 11244456677888876
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.19 Score=52.88 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=49.0
Q ss_pred eecCCEEEEEeCC---hHHHHHHHHHhcC-CCEEEEECCCC---cHH---HHHHcCCcc---cCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGFG---KVGTEVARRAKGL-GMNVIAHDPYA---QAD---RARATGVGL---VSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGlG---~IG~~vA~~l~~~-G~~V~~~d~~~---~~~---~a~~~g~~~---~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||-+ ++..+++..+..+ |++|....|.. +.+ .+++.|... .++++.+++||+|..-
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 225 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQT 225 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEEC
Confidence 3789999999975 6899999998887 99998877643 211 233345432 4899999999999884
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.02 Score=64.12 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=69.2
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc---CHHHhccccCEEEEeCCCChhcc----
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV---SFEEAISTADFISLHMPLTPATS---- 261 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~---- 261 (595)
+.|+++.|+|+|.+|.+.++.|+..|.+|+++|.... ...+++.|+... ...+.++++|+|+.+-...+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 4689999999999999999999999999999996542 223455676543 23456778998888654333211
Q ss_pred ------ccccHHHHh-cC-C------C-ceEEEeccCCchhcHHHHHHHHhc
Q 046427 262 ------KMFNDEAFF-KM-K------K-GVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 262 ------~li~~~~l~-~m-k------~-gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.++++-++. .+ + + ..+-|--+-|+.-...-+.+.|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 122222232 11 0 2 234444457887666666666654
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.018 Score=63.21 Aligned_cols=67 Identities=22% Similarity=0.221 Sum_probs=46.6
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHH-HHcCCc-ccCHHHhccccCEEEEeCCCCh
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA-RATGVG-LVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~g~~-~~~l~ell~~aD~V~l~~Plt~ 258 (595)
.++|.|||+|.+|.++|+.++..|++|.++|++...... ....-. ....+.+..++|+|+.+.+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCC
Confidence 468999999999999999999999999999976532110 000001 1123345578999988876553
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.096 Score=49.72 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=65.9
Q ss_pred cCCEEEEEeC--ChHHHHHHHHHhcCCCEEEEECCCC---cH--H-------HHHHcCC--cc-cCHHHhccccCEEEEe
Q 046427 191 VGKTLAVMGF--GKVGTEVARRAKGLGMNVIAHDPYA---QA--D-------RARATGV--GL-VSFEEAISTADFISLH 253 (595)
Q Consensus 191 ~gktvGIIGl--G~IG~~vA~~l~~~G~~V~~~d~~~---~~--~-------~a~~~g~--~~-~~l~ell~~aD~V~l~ 253 (595)
.|++|++||= +++..+++..+..||+++....|.. .. + .+.+.|. .. .++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 4889999993 8999999999999999999988754 12 1 1122343 22 3899999999999876
Q ss_pred CCC----Chh-------ccccccHHHHhcCCCceEEEecc
Q 046427 254 MPL----TPA-------TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 254 ~Pl----t~~-------t~~li~~~~l~~mk~gailiN~a 282 (595)
.-- .+. ....++++.++.+|++++|.-|.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 543 110 11456888888888899998887
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.05 Score=57.04 Aligned_cols=62 Identities=21% Similarity=0.357 Sum_probs=43.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHH-----c----CC--c--c-cCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARA-----T----GV--G--L-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~-----~----g~--~--~-~~l~ell~~aD~V~l~~P 255 (595)
++|+|||.|.+|..+|..+...|. +|..||.......... . +. + . .+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999987654 9999998653221111 1 11 1 1 235 45899999999863
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.031 Score=60.39 Aligned_cols=88 Identities=22% Similarity=0.188 Sum_probs=62.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCC-cHHHHHHcC---Ccc--------cCHHHhccccCEEEEeCCCChh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYA-QADRARATG---VGL--------VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g---~~~--------~~l~ell~~aD~V~l~~Plt~~ 259 (595)
+++.|||.|.||+.+|..|.+.| .+|++.|+.. ...++.... ++. ..+.+++++.|+|+.|+|..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 57999999999999999999888 8999999985 333333332 221 147789999999999999543
Q ss_pred ccccccHHHHhcCCCceEEEeccCCc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
+..++ -+.++.|.-.+|++=..
T Consensus 81 ~~~i~----ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 81 DLTIL----KACIKTGVDYVDTSYYE 102 (389)
T ss_pred hHHHH----HHHHHhCCCEEEcccCC
Confidence 22221 13357777788877444
|
|
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.19 Score=52.92 Aligned_cols=93 Identities=24% Similarity=0.252 Sum_probs=62.6
Q ss_pred ecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC--c-HHH-------HHHcCCc---ccCHHHhccccCEEEEeC-
Q 046427 190 LVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA--Q-ADR-------ARATGVG---LVSFEEAISTADFISLHM- 254 (595)
Q Consensus 190 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~--~-~~~-------a~~~g~~---~~~l~ell~~aD~V~l~~- 254 (595)
+.|.+|+++|- +++-++++..+..||++|....|.. . ... +.+.|.. ..++++.+++||+|..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 78899999997 7899999999999999999987643 1 111 2334532 248999999999998842
Q ss_pred -CCCh----------hccccccHHHHhcCCCceEEEecc
Q 046427 255 -PLTP----------ATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 255 -Plt~----------~t~~li~~~~l~~mk~gailiN~a 282 (595)
.... -....++++.++.+|+++++.-|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 1000 012245556666666666666554
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.02 Score=60.78 Aligned_cols=61 Identities=33% Similarity=0.445 Sum_probs=46.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHH-HHcC-C--ccc---CHHHhccccCEEEE
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA-RATG-V--GLV---SFEEAISTADFISL 252 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~g-~--~~~---~l~ell~~aD~V~l 252 (595)
++||||||-|..|+.++..++.+|++|++.||....... .... + .+. .+.++.+.||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 479999999999999999999999999999987632111 1111 1 111 48899999999976
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.053 Score=57.46 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=45.8
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHH---------cC----Ccc-cCHHHhccccCEEEEeC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARA---------TG----VGL-VSFEEAISTADFISLHM 254 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~---------~g----~~~-~~l~ell~~aD~V~l~~ 254 (595)
++.++|+|||.|.+|..+|..+...|. +|..+|.+.....+.. .+ +.. .+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 445799999999999999999887774 8999998664221111 11 111 245 5679999999977
|
|
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.25 Score=52.77 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=49.1
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC---cHHH-------HHHcCC--c-ccCHHHhccccCEEEE
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA---QADR-------ARATGV--G-LVSFEEAISTADFISL 252 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~g~--~-~~~l~ell~~aD~V~l 252 (595)
.+.|++|++||= .++..+++..+..+|++|..+.|.. +... +...|. . ..++++.+++||+|..
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~ 228 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT 228 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence 488999999997 6888999999999999999988753 2111 112353 2 2489999999999988
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.042 Score=48.59 Aligned_cols=84 Identities=21% Similarity=0.439 Sum_probs=56.6
Q ss_pred EEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-----C---HHH-hccccCEEEEeCCCChhccccc
Q 046427 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-----S---FEE-AISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-----~---l~e-ll~~aD~V~l~~Plt~~t~~li 264 (595)
+.|+|+|.+|+.+++.|+..+.+|++.|.+. ..+.+.+.|+... + |.+ -+++||.|+++++... .++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~--~n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDE--ENLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHH--HHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHH--HHHH
Confidence 5699999999999999999777999999876 3455666676432 2 332 3688999999998543 3333
Q ss_pred cHHHHhcCCCceEEEe
Q 046427 265 NDEAFFKMKKGVRIVN 280 (595)
Q Consensus 265 ~~~~l~~mk~gailiN 280 (595)
-...++.+-+...++-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 3334444555555553
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.13 Score=54.04 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=47.9
Q ss_pred ecCCEEEEEeC---ChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCc-ccCHHHhccccCEEEEe
Q 046427 190 LVGKTLAVMGF---GKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVG-LVSFEEAISTADFISLH 253 (595)
Q Consensus 190 l~gktvGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~-~~~l~ell~~aD~V~l~ 253 (595)
+.|++|++||- +++..+++..+..||+++....|.. ..... ..+. ..++++.+++||+|..-
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~--~~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGM--PEYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccc--cceEEECCHHHHhCCCCEEEEC
Confidence 78999999988 5899999999999999999988754 11110 0112 34799999999999874
|
|
| >COG4747 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.033 Score=49.59 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=70.0
Q ss_pred ccccccHHHHHhhCCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEEEEeCCeeEEEEEcceEEEe
Q 046427 438 FVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDV 517 (595)
Q Consensus 438 ~vn~~nA~~iA~e~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSvgGG~i~I~~Idgf~v~~ 517 (595)
.-|+.++....+|.||+++--+.-..+ .|.-+-++-.+.+ +. -+..+=-||-|..
T Consensus 14 ~GRL~~~~~~L~eagINiRA~tiAdt~---dFGIiRmvV~~~d-----------~A-----------~~~Lee~gF~Vr~ 68 (142)
T COG4747 14 PGRLASVANKLKEAGINIRAFTIADTG---DFGIIRMVVDRPD-----------EA-----------HSVLEEAGFTVRE 68 (142)
T ss_pred cchHHHHHHHHHHcCCceEEEEecccc---CcceEEEEcCChH-----------HH-----------HHHHHHCCcEEEe
Confidence 357888999999999999754332221 3332322221100 00 0011112344433
Q ss_pred ecCccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC
Q 046427 518 SLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572 (595)
Q Consensus 518 ~~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~ 572 (595)
+ ..|-+.-.|+||-+.+|...|++++||+-++.-+-.++ +.|+.++.+++-
T Consensus 69 ~---dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ed~ 119 (142)
T COG4747 69 T---DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVEDI 119 (142)
T ss_pred e---eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEhhHH
Confidence 2 45677889999999999999999999999998886666 789999998764
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.046 Score=56.07 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=45.7
Q ss_pred CEEEEEeC-ChHHHHHHHHHhc-CCCEEEE-ECCCCcHH-HHHHcCCc-ccCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGF-GKVGTEVARRAKG-LGMNVIA-HDPYAQAD-RARATGVG-LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~-~a~~~g~~-~~~l~ell~~aD~V~l~~P 255 (595)
.+|+|+|+ |+||+.+++.+.. -++++.+ +|+..... .....++. ..+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 37999998 9999999999885 4788776 77654211 11233442 3478999989999998875
|
|
| >cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.043 Score=45.62 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=44.9
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecC-CCcEEEEEEcCCCC-cH---HHHHHHhcCCCcceEEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAP-QKQAVMTIGVDEEP-SR---EVLKKIGETPAIEEFVF 592 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~-g~~al~vi~~d~~~-~~---e~l~~L~~~~~v~~v~~ 592 (595)
.+.+..+|+||.++.+.+.+++++|||..+....... .......++++... .+ ++++.|++. ..++++
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~--~~~~~~ 75 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL--TEFVKV 75 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh--CCeEEE
Confidence 4566778999999999999999999999997543322 22334446666542 22 456666552 334544
|
The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.032 Score=58.22 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=37.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cH-HHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QA-DRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~-~~a~~~g~~ 236 (595)
-|+.+||+|+|-+|.--.+.+++|||+|+++|... .. +..+.+|.+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd 228 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD 228 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc
Confidence 79999999999999988888999999999999875 33 333446653
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.051 Score=55.28 Aligned_cols=113 Identities=21% Similarity=0.228 Sum_probs=73.8
Q ss_pred HHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC-cH--H----HHHHc
Q 046427 162 TAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA-QA--D----RARAT 233 (595)
Q Consensus 162 l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~--~----~a~~~ 233 (595)
.+.+|++-++.++ .|.+|+..|++|+|+ |.||..+|+.+.+.+.+....-+.. .. + .-.++
T Consensus 148 yaa~r~Vl~~~~~-----------lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~ 216 (351)
T COG5322 148 YAACRQVLKHFAQ-----------LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEEL 216 (351)
T ss_pred HHHHHHHHHHHHH-----------hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhccccc
Confidence 4566777665532 488999999999998 9999999999998877655443221 11 1 11223
Q ss_pred CCc-ccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHH
Q 046427 234 GVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEE 290 (595)
Q Consensus 234 g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~ 290 (595)
|-. ..+++..+.+.|+++-... ++ +-..|+.. .+|||+.++|-++-.=+|+.
T Consensus 217 ~~~~i~s~d~~~~~e~i~v~vAs-~~-~g~~I~pq---~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 217 GRGKIMSLDYALPQEDILVWVAS-MP-KGVEIFPQ---HLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred CCCeeeeccccccccceEEEEee-cC-CCceechh---hccCCeEEEcCCcCcccccc
Confidence 332 3467766666666655443 22 34455554 47999999999987765543
|
|
| >cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.066 Score=43.74 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=45.0
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC----CC-cHHHHHHHhc
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE----EP-SREVLKKIGE 583 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~----~~-~~e~l~~L~~ 583 (595)
..+.+..+|+||.+..++..|..+++||...++... .++.++-++.+.. ++ +++.++++++
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~ 67 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIRE 67 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHHH
Confidence 356788899999999999999999999999998754 3456766666522 23 4555565543
|
This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.0091 Score=59.20 Aligned_cols=132 Identities=23% Similarity=0.230 Sum_probs=81.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHH-----------cC-C-------c-----------ccC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARA-----------TG-V-------G-----------LVS 239 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~-----------~g-~-------~-----------~~~ 239 (595)
.=+.|+|||.|.||+.+|+.+...|+.|+.+|.+.. ..++.+ .+ . + ..+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 346799999999999999999999999999998752 121110 00 0 0 114
Q ss_pred HHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEE-eccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCc
Q 046427 240 FEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV-NVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDS 318 (595)
Q Consensus 240 l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili-N~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~ 318 (595)
+.++++++|+|+=++-.+.+.+.-+-++.=...|+.++++ |+++ +...++..+++...- .+||..|.+-|..
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvPvM--- 162 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVPVM--- 162 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCchhH---
Confidence 5667777888776654333222222222223367777664 6654 345566777666532 4888888876542
Q ss_pred ccccCCcEEEcCCC
Q 046427 319 KLVLHENVTVTPHL 332 (595)
Q Consensus 319 ~L~~~~nvilTPHi 332 (595)
.|. .||=|+..
T Consensus 163 KLv---EVir~~~T 173 (298)
T KOG2304|consen 163 KLV---EVIRTDDT 173 (298)
T ss_pred HHh---hhhcCCCC
Confidence 344 46677754
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.16 Score=54.13 Aligned_cols=65 Identities=28% Similarity=0.315 Sum_probs=49.7
Q ss_pred eecCCEEEEEeCC--hHHHHHHHHHhcCCCEEEEECCCC--c-H-------HHHHHcCC--cc-cCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGFG--KVGTEVARRAKGLGMNVIAHDPYA--Q-A-------DRARATGV--GL-VSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~-~-------~~a~~~g~--~~-~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||-+ ++..+++..+..+|+++....|.. . . +.+++.|. .. .++++.+++||+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4788999999976 689999999999999999987743 1 1 11233453 22 4899999999999884
|
|
| >COG1707 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.042 Score=51.82 Aligned_cols=69 Identities=9% Similarity=0.214 Sum_probs=59.9
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC-CcHHHHHHHhcCCCcceEEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE-PSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~-~~~e~l~~L~~~~~v~~v~~ 592 (595)
|-+...++||++..++.+++++|.||.+.|.+-.+.|+.++..+++..- -.++++++++..+.|.+++.
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev~i 74 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEVEI 74 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCCCHHHHHHHhhccceEEEeee
Confidence 3456678999999999999999999999999988888899999999885 45689999999998887754
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.043 Score=58.64 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=40.0
Q ss_pred EEEEEeCChHHHHHHHHHhc-CCCEEEEE-CCCCcHH--HHHHcCC------------------cc-cCHHHhccccCEE
Q 046427 194 TLAVMGFGKVGTEVARRAKG-LGMNVIAH-DPYAQAD--RARATGV------------------GL-VSFEEAISTADFI 250 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~~--~a~~~g~------------------~~-~~l~ell~~aD~V 250 (595)
+|||+|+|+||+.+++.+.. -++++.+. |+..... .+...|+ .. .++++++.++|+|
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVV 82 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIV 82 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEE
Confidence 79999999999999998875 46888774 5332111 1222221 11 1456666777777
Q ss_pred EEeCC
Q 046427 251 SLHMP 255 (595)
Q Consensus 251 ~l~~P 255 (595)
+.|+|
T Consensus 83 IdaT~ 87 (341)
T PRK04207 83 VDATP 87 (341)
T ss_pred EECCC
Confidence 77776
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.085 Score=58.12 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=64.4
Q ss_pred eeeecCCEEEEEeC----------ChHHHHHHHHHhcCCCEEEEECCCCcHHHH-HHcCCcccCHHH-hccccCEEEEeC
Q 046427 187 GVSLVGKTLAVMGF----------GKVGTEVARRAKGLGMNVIAHDPYAQADRA-RATGVGLVSFEE-AISTADFISLHM 254 (595)
Q Consensus 187 g~~l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~g~~~~~l~e-ll~~aD~V~l~~ 254 (595)
+..+.|++|+|+|+ ..-+..+++.|...|.+|.+|||+...+.. ...+.. .+++ .++.||.|++++
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~--~~~~~~~~~ad~vvi~t 386 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGII--PVSEVKSSHYDAIIVAV 386 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcc--cchhhhhcCCCEEEEcc
Confidence 44689999999999 346788999999999999999998543322 223322 1222 467899999999
Q ss_pred CCChhccccccHHHHh-cCCCceEEEeccCCch
Q 046427 255 PLTPATSKMFNDEAFF-KMKKGVRIVNVARGGV 286 (595)
Q Consensus 255 Plt~~t~~li~~~~l~-~mk~gailiN~arg~~ 286 (595)
. .++-+. ++-+.+. .||...+|+|+ |+-+
T Consensus 387 ~-h~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 387 G-HQQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred C-CHHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 8 444443 4444443 45544688884 5544
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.042 Score=58.66 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=32.9
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|++++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5899999999999999999999999997 78888875
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.058 Score=59.21 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=61.4
Q ss_pred eeeecCCEEEEEeC----------ChHHHHHHHHHhcCC-CEEEEECCCCcHHHH-HHcCCcccCHHHhccccCEEEEeC
Q 046427 187 GVSLVGKTLAVMGF----------GKVGTEVARRAKGLG-MNVIAHDPYAQADRA-RATGVGLVSFEEAISTADFISLHM 254 (595)
Q Consensus 187 g~~l~gktvGIIGl----------G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a-~~~g~~~~~l~ell~~aD~V~l~~ 254 (595)
+.++.|++|+|+|+ ..-...+++.|+..| .+|.+|||....... ....+...++++.++.||+|++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 45689999999998 346778999999986 999999998643211 111233458999999999999999
Q ss_pred CCChhccccccHHHHhcCCCceEEEe
Q 046427 255 PLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 255 Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
+ .++-+. ++-+. |+. .+++|
T Consensus 395 ~-~~~~~~-~~~~~---~~~-~~v~D 414 (415)
T PRK11064 395 D-HSQFKA-INGDN---VHQ-QWVVD 414 (415)
T ss_pred C-CHHhcc-CCHHH---hCC-CEEEe
Confidence 8 443433 34333 333 36666
|
|
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.19 Score=53.50 Aligned_cols=64 Identities=31% Similarity=0.383 Sum_probs=49.5
Q ss_pred ecCCEEEEEeCC--hHHHHHHHHHhcCCCEEEEECCCC---cHH-------HHHHcCCc---ccCHHHhccccCEEEEe
Q 046427 190 LVGKTLAVMGFG--KVGTEVARRAKGLGMNVIAHDPYA---QAD-------RARATGVG---LVSFEEAISTADFISLH 253 (595)
Q Consensus 190 l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~---~~~-------~a~~~g~~---~~~l~ell~~aD~V~l~ 253 (595)
+.|++|++||-+ ++.++++..+..||++|....|.. ..+ .++..|.. ..++++++++||+|..-
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 789999999997 789999999999999999887643 111 12234543 24799999999999884
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.035 Score=61.18 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=50.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHH-cCCcc--------cCHHHh-ccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARA-TGVGL--------VSFEEA-ISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~-~g~~~--------~~l~el-l~~aD~V~l~~Plt~ 258 (595)
+++.|+|+|.+|+.+|+.|...|.+|+++|++.. .+...+ .++.. ..++++ +.++|.|+++++...
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 4789999999999999999999999999998663 233333 44422 135566 889999999998544
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.024 Score=57.00 Aligned_cols=90 Identities=23% Similarity=0.232 Sum_probs=58.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-c-----HHH---HHHcC-----------------Cc-----
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-Q-----ADR---ARATG-----------------VG----- 236 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~-----~~~---a~~~g-----------------~~----- 236 (595)
.|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.. . ... ....| ++
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 5889999999999999999999999997 677777542 0 000 00111 11
Q ss_pred -cc---CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 237 -LV---SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 237 -~~---~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.. +++++++++|+|+.|+. +.+++.++++...+ .+.-+|+++
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 01 24467778888888776 55667666655443 344566654
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.46 Score=48.57 Aligned_cols=160 Identities=14% Similarity=0.072 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC-----------EEEEE
Q 046427 153 AAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM-----------NVIAH 221 (595)
Q Consensus 153 vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-----------~V~~~ 221 (595)
+|--+++-+++.+| ..|..|...++.|+|.|.-|-.+|+.+...+. +++.+
T Consensus 4 TaaV~lAgllnAlk------------------~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~v 65 (254)
T cd00762 4 TASVAVAGLLAALK------------------VTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXV 65 (254)
T ss_pred hHHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEE
Confidence 45566777777777 23456888999999999999999999987654 68888
Q ss_pred CCCC---------cH--HH---HHHcCCcccCHHHhcc--ccCEEEEeCCCChhccccccHHHHhcCC---CceEEEecc
Q 046427 222 DPYA---------QA--DR---ARATGVGLVSFEEAIS--TADFISLHMPLTPATSKMFNDEAFFKMK---KGVRIVNVA 282 (595)
Q Consensus 222 d~~~---------~~--~~---a~~~g~~~~~l~ell~--~aD~V~l~~Plt~~t~~li~~~~l~~mk---~gailiN~a 282 (595)
|+.- .. .. .....-...+|.|+++ +.|+++=.. ..-+++.++.++.|. +..+|.=.|
T Consensus 66 D~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLS 141 (254)
T cd00762 66 DRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALS 141 (254)
T ss_pred CCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence 8641 11 01 1111112348999999 999997643 235799999999998 888999888
Q ss_pred CCch---hcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCC
Q 046427 283 RGGV---VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGA 334 (595)
Q Consensus 283 rg~~---vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~ 334 (595)
.-.. +..++.+++=+...|.+.|.-.+.++--......=+.-|+++-|-++-
T Consensus 142 NPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGigl 196 (254)
T cd00762 142 NPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVAL 196 (254)
T ss_pred CcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhh
Confidence 6443 245555666555567666653333331111111124568888887763
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.065 Score=48.14 Aligned_cols=99 Identities=22% Similarity=0.319 Sum_probs=64.9
Q ss_pred CEEEEEe----CChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 193 KTLAVMG----FGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 193 ktvGIIG----lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
|+++||| -+..|..+.+.++..|++|+..+|.... -.|.. +.+++|.-...|++++++| .+.+..++.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v~~- 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIVDE- 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGGCSST-SEEEE-S--HHHHHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccCCCCCCCEEEEEcC-HHHHHHHHHH-
Confidence 6899999 7899999999999999999999986521 12443 3478884488999999999 4445555543
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCee
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIIS 302 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ 302 (595)
+..+....+++..+ ...+++.+.+++..+.
T Consensus 75 -~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 75 -AAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred -HHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 23346678888876 4566677777776553
|
|
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.29 Score=53.80 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=49.7
Q ss_pred eecCCEEEEEeC---ChHHHHHHHHHhcC-CCEEEEECCCC---cHH---HHHHcCC--c-ccCHHHhccccCEEEEeC
Q 046427 189 SLVGKTLAVMGF---GKVGTEVARRAKGL-GMNVIAHDPYA---QAD---RARATGV--G-LVSFEEAISTADFISLHM 254 (595)
Q Consensus 189 ~l~gktvGIIGl---G~IG~~vA~~l~~~-G~~V~~~d~~~---~~~---~a~~~g~--~-~~~l~ell~~aD~V~l~~ 254 (595)
.+.|++|++||- +++..+++..+..+ ||+|....|.. +.+ .+.+.|. + ..++++.+++||+|....
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 378999999999 48999999988876 99999887743 111 2233353 2 248999999999999843
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.3 Score=51.61 Aligned_cols=148 Identities=19% Similarity=0.227 Sum_probs=102.2
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HH--H-HHcCCc---ccCHHHhc---cccCEEEEeCCCChhcccc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DR--A-RATGVG---LVSFEEAI---STADFISLHMPLTPATSKM 263 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~--a-~~~g~~---~~~l~ell---~~aD~V~l~~Plt~~t~~l 263 (595)
.+|.|||+.||+.++..+...|+.|.+|++..+. +. + ++.|.. ..++++++ +.--.|++.+---.-...+
T Consensus 8 digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~ 87 (487)
T KOG2653|consen 8 DIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQF 87 (487)
T ss_pred chhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHH
Confidence 5899999999999999999999999999997632 11 1 122322 23777774 5566777766443333334
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHH
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGV 343 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~ 343 (595)
| ++....|.+|-+|||-+-..--|+..=.+.|....|-..|.-|.+.|--... -|-+ +-+.+.+++.++
T Consensus 88 I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~-----GPSl-----MpGg~~~Awp~i 156 (487)
T KOG2653|consen 88 I-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARY-----GPSL-----MPGGSKEAWPHI 156 (487)
T ss_pred H-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccccccc-----CCcc-----CCCCChHHHHHH
Confidence 4 4566779999999999988888888878888777777899999988843222 2322 335567777665
Q ss_pred HHHHHHHHHH
Q 046427 344 AIEIAEAVIG 353 (595)
Q Consensus 344 ~~~~~~~l~~ 353 (595)
..+.+.|..
T Consensus 157 -k~ifq~iaa 165 (487)
T KOG2653|consen 157 -KDIFQKIAA 165 (487)
T ss_pred -HHHHHHHHH
Confidence 445555533
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.74 Score=47.72 Aligned_cols=184 Identities=17% Similarity=0.148 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcC----CC-------EEEEE
Q 046427 153 AAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGL----GM-------NVIAH 221 (595)
Q Consensus 153 vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~----G~-------~V~~~ 221 (595)
+|--+++-+++.+|- .|..|...+|.|+|.|.-|-.+|+.+... |+ +++.+
T Consensus 4 Ta~V~lAgllnAlk~------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~v 65 (279)
T cd05312 4 TAAVALAGLLAALRI------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLV 65 (279)
T ss_pred HHHHHHHHHHHHHHH------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEE
Confidence 455667777777762 35568889999999999999999998866 76 78888
Q ss_pred CCCC-------c--H---HHHHHcC-CcccCHHHhcc--ccCEEEEeCCCChhccccccHHHHhcCC---CceEEEeccC
Q 046427 222 DPYA-------Q--A---DRARATG-VGLVSFEEAIS--TADFISLHMPLTPATSKMFNDEAFFKMK---KGVRIVNVAR 283 (595)
Q Consensus 222 d~~~-------~--~---~~a~~~g-~~~~~l~ell~--~aD~V~l~~Plt~~t~~li~~~~l~~mk---~gailiN~ar 283 (595)
|++- . . ..++... -...+|.|+++ ++|+++=+- ..-+++.++.++.|. +..+|.=.|.
T Consensus 66 D~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSN 141 (279)
T cd05312 66 DSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSN 141 (279)
T ss_pred cCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 8652 1 1 1122211 02348999999 889997643 124789999999998 8899998886
Q ss_pred Cch---hcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHH
Q 046427 284 GGV---VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTT-----EAQEGVAIEIAEAVIGAL 355 (595)
Q Consensus 284 g~~---vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~-----ea~~~~~~~~~~~l~~~l 355 (595)
-.. +..++.+++-+...|.+.|+-.-..+.-.....-=+.-|+++-|-++-... .--..|-..+++.|.++.
T Consensus 142 Pt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~ 221 (279)
T cd05312 142 PTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLV 221 (279)
T ss_pred cCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhC
Confidence 543 134444555444447666642211111001111123468888887763221 111445555666666655
Q ss_pred cCC
Q 046427 356 KGE 358 (595)
Q Consensus 356 ~g~ 358 (595)
...
T Consensus 222 ~~~ 224 (279)
T cd05312 222 TDE 224 (279)
T ss_pred Ccc
Confidence 433
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.047 Score=54.33 Aligned_cols=90 Identities=20% Similarity=0.192 Sum_probs=65.3
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH---HHHcCCcc----cCHHHhccccCEEEEeCCCChh
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR---ARATGVGL----VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~---a~~~g~~~----~~l~ell~~aD~V~l~~Plt~~ 259 (595)
..+|.||++.|||-|.+|..=|+.+...|.+|+++.+....+. ..+.++.. .+.++ +..+++|+.+++..+
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~- 84 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE- 84 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH-
Confidence 3579999999999999999999999999999999998773322 12222222 13334 344999999987544
Q ss_pred ccccccHHHHhcCCCceEEEecc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a 282 (595)
+|+..+..+++-.+++|+.
T Consensus 85 ----ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 85 ----LNERIAKAARERRILVNVV 103 (210)
T ss_pred ----HHHHHHHHHHHhCCceecc
Confidence 4566666667767888874
|
|
| >cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.067 Score=42.78 Aligned_cols=59 Identities=15% Similarity=0.304 Sum_probs=42.6
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEc----CCCCcHHHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV----DEEPSREVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~----d~~~~~e~l~~L~~ 583 (595)
.+.+...|+||+++.|+..|.++++||..+++.... +..+..+.+ .++.+.+.+++|++
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~--~~~~~~f~i~~~~~~~~~~~~~~~i~~ 64 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLG--ERAEDVFYVTDADGQPLDPERQEALRA 64 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecC--CEEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 356788999999999999999999999999986443 345554443 22345566666653
|
This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.13 Score=56.61 Aligned_cols=110 Identities=22% Similarity=0.311 Sum_probs=70.2
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH------HHHHHcCCccc---CHHHhccccCEEEEeCCCChh
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA------DRARATGVGLV---SFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~ 259 (595)
.+.+|++.|+|.|.+|.++|+.|...|++|.++|+.... +...+.|+... ..++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 367999999999999999999999999999999986422 11223355432 234667789999987654443
Q ss_pred ccccc----------cH-HHHhc-CCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 260 TSKMF----------ND-EAFFK-MKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 260 t~~li----------~~-~~l~~-mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
...+. .. +.+.. .+.-.+-|--+.|+.-..+-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 32221 11 11221 232234444457888666666677754
|
|
| >TIGR00655 PurU formyltetrahydrofolate deformylase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.028 Score=58.44 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=42.1
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~ 572 (595)
.|.+..+|+||+|++|++.|+++|+||.+++-.....++.=.|++++|-+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~ 51 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE 51 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC
Confidence 46677899999999999999999999999998876666677777777743
|
This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. |
| >cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.072 Score=42.27 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=43.2
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC----CcHHHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE----PSREVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~----~~~e~l~~L~~ 583 (595)
.|.+...|+||.++.++..|.++++||..+....... ....++.++.+ .+++..++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~l~~ 64 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE--RALDVFYVTDSDGRPLDPERIARLEE 64 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC--EEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 4567789999999999999999999999999865432 55556665432 34456665543
|
This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.049 Score=62.63 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=64.4
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-----C---HHHh-ccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-----S---FEEA-ISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----~---l~el-l~~aD~V~l~~Plt~~t~ 261 (595)
...+.|+|+|++|+.+++.++..|.++++.|.++. .+.+++.|.... + |+++ +++||.++++++..+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 35699999999999999999999999999998773 455566675421 2 3222 679999999999766554
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
.++. ..+.+.|...++--+|
T Consensus 480 ~i~~--~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIVE--LCQQHFPHLHILARAR 499 (601)
T ss_pred HHHH--HHHHHCCCCeEEEEeC
Confidence 4432 3444566666665555
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.065 Score=57.60 Aligned_cols=87 Identities=31% Similarity=0.368 Sum_probs=60.7
Q ss_pred ecCCEEEEEeCCh----------HHHHHHHHHhcCCCEEEEECCCCcHHHHHHc-CCccc-CHHHhccccCEEEEeCCCC
Q 046427 190 LVGKTLAVMGFGK----------VGTEVARRAKGLGMNVIAHDPYAQADRARAT-GVGLV-SFEEAISTADFISLHMPLT 257 (595)
Q Consensus 190 l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~-g~~~~-~l~ell~~aD~V~l~~Plt 257 (595)
|.||||||+||-- -...++++|+..|.+|.+|||.......... ++.+. ++++++++||++++++- .
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence 8999999999853 4567899999999999999997643322222 24444 79999999999999875 3
Q ss_pred hhccccccHHHHhcCCCceEEEe
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN 280 (595)
++-+.+= -+.+ .||. ..+++
T Consensus 387 ~ef~~~d-~~~~-~m~~-~~v~D 406 (414)
T COG1004 387 DEFRDLD-FEKL-LMKT-PVVID 406 (414)
T ss_pred HHHhccC-hhhh-hccC-CEEEe
Confidence 4444432 2223 5654 44444
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.042 Score=57.15 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=49.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcC----Cccc----CHHHhccccCEEEEeCCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATG----VGLV----SFEEAISTADFISLHMPLT 257 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g----~~~~----~l~ell~~aD~V~l~~Plt 257 (595)
.+.|+++.|||.|-+|++++..|...|+ +|..++|.... ..+...+ +... ++.+.+.++|+|+.|+|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 3678999999999999999999999997 69999987532 1222221 1111 2335567889998888863
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.039 Score=62.84 Aligned_cols=85 Identities=15% Similarity=0.361 Sum_probs=58.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-----C---HHH-hccccCEEEEeCCCChhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-----S---FEE-AISTADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----~---l~e-ll~~aD~V~l~~Plt~~t~~ 262 (595)
..+-|+|+|++|+.+|+.++..|.+|++.|.+.. .+.+++.|+..+ + +++ -+++||.++++++..+++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 4588999999999999999999999999998763 355566665422 2 222 25689999999987665544
Q ss_pred cccHHHHhcCCCceEEE
Q 046427 263 MFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 263 li~~~~l~~mk~gaili 279 (595)
++-. ...+.+...++
T Consensus 498 iv~~--~~~~~~~~~ii 512 (558)
T PRK10669 498 IVAS--AREKRPDIEII 512 (558)
T ss_pred HHHH--HHHHCCCCeEE
Confidence 4432 12234454444
|
|
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.2 Score=52.88 Aligned_cols=63 Identities=11% Similarity=0.220 Sum_probs=47.9
Q ss_pred ecCCEEEEEeC---ChHHHHHHHHHhcCCC-EEEEECCCCc-HHHHHHcCCcc-cCHHHhccccCEEEE
Q 046427 190 LVGKTLAVMGF---GKVGTEVARRAKGLGM-NVIAHDPYAQ-ADRARATGVGL-VSFEEAISTADFISL 252 (595)
Q Consensus 190 l~gktvGIIGl---G~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aD~V~l 252 (595)
+.|.+|++||= +++..+++..+..+|+ +|....|..- +.......+.. .++++.+++||+|..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67899999998 5999999999999999 9998877531 11111112333 479999999999987
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.43 Score=51.31 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=47.4
Q ss_pred ecCCEEEEEeCC--------hHHHHHHHHHhcCCCEEEEECCCC---cHH---H----HHHcCCc---ccCHHHhccccC
Q 046427 190 LVGKTLAVMGFG--------KVGTEVARRAKGLGMNVIAHDPYA---QAD---R----ARATGVG---LVSFEEAISTAD 248 (595)
Q Consensus 190 l~gktvGIIGlG--------~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~----a~~~g~~---~~~l~ell~~aD 248 (595)
|+|++|+|+|.| ++.++++..+..||++|....|.. ..+ . +++.|.. ..++++.++++|
T Consensus 168 l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aD 247 (357)
T TIGR03316 168 LKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDAD 247 (357)
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCC
Confidence 789999999853 455778888999999999988752 221 1 2244543 248999999999
Q ss_pred EEEEe
Q 046427 249 FISLH 253 (595)
Q Consensus 249 ~V~l~ 253 (595)
+|..-
T Consensus 248 vvyt~ 252 (357)
T TIGR03316 248 IVYPK 252 (357)
T ss_pred EEEEC
Confidence 99885
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >PRK13010 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.04 Score=57.51 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=40.5
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD 570 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d 570 (595)
+.|.+..+|+||+|++|++.|+++|+||.+++-......+.-.|.++++
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 4677788999999999999999999999999886445556667776666
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.042 Score=57.84 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=46.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHH--HHHHcC-Cc---------ccCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQAD--RARATG-VG---------LVSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~--~a~~~g-~~---------~~~l~ell~~aD~V~l~~Plt 257 (595)
++|+|||.|.+|..+|..+...| .+|..||++.... .+.++. .. ..+. +.+++||+|+++++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 36999999999999999998888 5899999875321 111111 10 0134 5689999999999853
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=57.71 Aligned_cols=109 Identities=26% Similarity=0.351 Sum_probs=68.9
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCH-HHhccccCEEEEeC--CCC-h----h-
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSF-EEAISTADFISLHM--PLT-P----A- 259 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l-~ell~~aD~V~l~~--Plt-~----~- 259 (595)
+.|++|.|+|+|..|.++|+.|+..|++|.++|.... .....+.|++.... .+-+.++|+|+..- |.+ + .
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v 86 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVV 86 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHH
Confidence 6789999999999999999999999999999997642 22233456654321 23356899887632 211 1 1
Q ss_pred --ccc----cccHHH-Hhc-C-----CCceEEEeccCCchhcHHHHHHHHhc
Q 046427 260 --TSK----MFNDEA-FFK-M-----KKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 260 --t~~----li~~~~-l~~-m-----k~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
++. ++.+.. +.. + +...+-|.-+.|+.-..+-+...|+.
T Consensus 87 ~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 87 DLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred HHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 111 133222 222 2 33455666668998777766777764
|
|
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.23 Score=52.89 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=63.5
Q ss_pred eecCCEEEEEeCC--hHHHHHHHHHhcCCCEEEEECCCC---cHH-------HHHHcCCc---ccCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGFG--KVGTEVARRAKGLGMNVIAHDPYA---QAD-------RARATGVG---LVSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~---~~~-------~a~~~g~~---~~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||-+ ++.++.+..+..+|++|....|.. +.. .+...|.. ..++++.+++||+|..-
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 3778999999975 889999999999999999987742 111 12234532 24899999999999884
Q ss_pred CCC--Ch------h-----ccccccHHHHhcCC-CceEEEecc
Q 046427 254 MPL--TP------A-----TSKMFNDEAFFKMK-KGVRIVNVA 282 (595)
Q Consensus 254 ~Pl--t~------~-----t~~li~~~~l~~mk-~gailiN~a 282 (595)
.=. .. + -...++++.++.+| ++++|.-|.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 210 00 0 12335666666665 477777665
|
|
| >cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.086 Score=43.32 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=43.9
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC-----CC-cHHHHHHHhc
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE-----EP-SREVLKKIGE 583 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~-----~~-~~e~l~~L~~ 583 (595)
+-+..+|+||.++.|+..|.++++||..-++... ++..+.++.+.. +. +++-+++|++
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~ 66 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAPIDDPIRLASIED 66 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCCCCCHHHHHHHHH
Confidence 4466789999999999999999999999999854 677777776532 22 4455566543
|
This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.4 Score=51.34 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=79.0
Q ss_pred hhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-ChHHHHHHHHH
Q 046427 133 SAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-GKVGTEVARRA 211 (595)
Q Consensus 133 ~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l 211 (595)
+.+...+|+|.|.-+....++ .+++=++.+.++ .| .+.|++|++||= .++-++++..+
T Consensus 156 ~la~~~~vPVINA~~~~~HPt--QaLaDl~Ti~e~------------------~G-~l~glkva~vGD~~nva~Sli~~~ 214 (348)
T PLN02342 156 DLAEYSSVPVINGLTDYNHPC--QIMADALTIIEH------------------IG-RLEGTKVVYVGDGNNIVHSWLLLA 214 (348)
T ss_pred HHHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------------hC-CcCCCEEEEECCCchhHHHHHHHH
Confidence 344556899999855432222 222222333221 12 378999999997 46888888888
Q ss_pred hcCCCEEEEECCCC---cHH---HHHHcC---Ccc-cCHHHhccccCEEEEeC----CCChh--------ccccccHHHH
Q 046427 212 KGLGMNVIAHDPYA---QAD---RARATG---VGL-VSFEEAISTADFISLHM----PLTPA--------TSKMFNDEAF 269 (595)
Q Consensus 212 ~~~G~~V~~~d~~~---~~~---~a~~~g---~~~-~~l~ell~~aD~V~l~~----Plt~~--------t~~li~~~~l 269 (595)
..||++|....|.. ..+ .+.+.| +.. .++++.+++||+|..-. -..++ ....++++.+
T Consensus 215 ~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell 294 (348)
T PLN02342 215 AVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALM 294 (348)
T ss_pred HHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHH
Confidence 89999999887743 111 123334 232 47999999999999853 11010 1244566666
Q ss_pred hcCCCceEEEecc
Q 046427 270 FKMKKGVRIVNVA 282 (595)
Q Consensus 270 ~~mk~gailiN~a 282 (595)
+.+|++++|.-|.
T Consensus 295 ~~ak~~aivMHpL 307 (348)
T PLN02342 295 KLAGPQAYFMHCL 307 (348)
T ss_pred hccCCCcEEeCCC
Confidence 6667776666664
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.055 Score=57.23 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=45.5
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHHHHHc----------CCcc-cCHHHhccccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADRARAT----------GVGL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~----------g~~~-~~l~ell~~aD~V~l~~P 255 (595)
.+++|+|||.|.+|..+|..+...|. ++..||.+........+ .+.. .+-.+.+++||+|+++.-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 46799999999999999999987776 89999986532211111 1111 122355899999999764
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.082 Score=56.53 Aligned_cols=108 Identities=22% Similarity=0.276 Sum_probs=64.5
Q ss_pred EEEEEeCChHHHHHHHHHhcC----------CCEEEE-ECCCC--------cHHH----HHHcCC-c-------ccCHHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGL----------GMNVIA-HDPYA--------QADR----ARATGV-G-------LVSFEE 242 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~----------G~~V~~-~d~~~--------~~~~----a~~~g~-~-------~~~l~e 242 (595)
+|||+|+|.||+.+++.+... +++|.+ +|+.. ..+. ....+. . ..++++
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 83 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLE 83 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHH
Confidence 799999999999999998744 567665 45321 1211 111221 0 127888
Q ss_pred hcc--ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchh-cHHHHHHHHhcCCe
Q 046427 243 AIS--TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV-DEEALVRALDSGII 301 (595)
Q Consensus 243 ll~--~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v-d~~aL~~aL~~g~i 301 (595)
++. +.|+|+.|+|....+.+.--.-....|+.|.-+|-...+.+. ..++|.++.++...
T Consensus 84 ll~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 84 VIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 884 689999999964433222112223446677777665444443 35677776665543
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.13 Score=53.97 Aligned_cols=87 Identities=29% Similarity=0.275 Sum_probs=64.3
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccc-------
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSK------- 262 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~------- 262 (595)
.|++++|||=-.--..++++|.+.|++|..+.-. . +.....|++.. +.++++++||+|++-+|.+.+...
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~-~-~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFD-Q-LDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecc-c-cccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 4789999999999999999999999998875321 1 11123477665 578899999999999887543211
Q ss_pred ---cccHHHHhcCCCceEEE
Q 046427 263 ---MFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 263 ---li~~~~l~~mk~gaili 279 (595)
-++.+.++.|++++.++
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE
Confidence 13567899999998444
|
|
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.3 Score=52.12 Aligned_cols=178 Identities=20% Similarity=0.150 Sum_probs=115.4
Q ss_pred hCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC
Q 046427 137 EHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM 216 (595)
Q Consensus 137 ~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~ 216 (595)
+..|.|.|+- -..+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 151 ~~~ip~f~DD---~~GTa~v~lA~l~na~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~ 209 (752)
T PRK07232 151 RMDIPVFHDD---QHGTAIISAAALLNALE------------------LVGKKIEDVKIVVSGAGAAAIACLNLLVALGA 209 (752)
T ss_pred hcCCCeeccc---cchHHHHHHHHHHHHHH------------------HhCCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence 3479999983 33456667777887777 23456888899999999999999999998888
Q ss_pred ---EEEEECCCC--c------HHHHHH---cCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 217 ---NVIAHDPYA--Q------ADRARA---TGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 217 ---~V~~~d~~~--~------~~~a~~---~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+++.+|.+- . ....+. ..-...+|.|+++.+|+++=. . +-+.+.++.++.|.+..+|.=.|
T Consensus 210 ~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifals 284 (752)
T PRK07232 210 KKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALA 284 (752)
T ss_pred CcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecC
Confidence 788888642 0 011111 111234899999999988653 2 25899999999999999999998
Q ss_pred CCchh-cHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCC---------CcHHHHHHHHHHHHHHH
Q 046427 283 RGGVV-DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGA---------STTEAQEGVAIEIAEAV 351 (595)
Q Consensus 283 rg~~v-d~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~---------~t~ea~~~~~~~~~~~l 351 (595)
.-... ..++.+++ ..|.|.+.|- ...|- +.-|+++-|-++- -|++.....+..+++.+
T Consensus 285 NP~~E~~p~~a~~~-~~~~i~atGr---s~~pn-------Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 352 (752)
T PRK07232 285 NPDPEITPEEAKAV-RPDAIIATGR---SDYPN-------QVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELA 352 (752)
T ss_pred CCCccCCHHHHHHh-cCCEEEEECC---cCCCC-------cccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhc
Confidence 65542 23333333 2245655551 11121 2346777776542 34555555544444433
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.048 Score=60.04 Aligned_cols=122 Identities=21% Similarity=0.363 Sum_probs=75.0
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-----HHHHHcCCccc---CHHHhccccCEEEEeCCCChhcc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-----DRARATGVGLV---SFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
..+|+|.|+|+|.-|.++|+.|+..|.+|+++|..... ......+++.. ...+.+.++|+|++.=- -+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG-i~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG-IPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC-CCCCC
Confidence 44999999999999999999999999999999966532 11123454432 12267889999988532 22222
Q ss_pred ccc-----------cHH-HHhcC-CCc-eEEEeccCCchhcHHHHHHHHh--------cCCeeEEEEecCCCC
Q 046427 262 KMF-----------NDE-AFFKM-KKG-VRIVNVARGGVVDEEALVRALD--------SGIISQAALDVFTEE 312 (595)
Q Consensus 262 ~li-----------~~~-~l~~m-k~g-ailiN~arg~~vd~~aL~~aL~--------~g~i~ga~lDv~~~E 312 (595)
-++ .+- .+... ++. .+-|--+-|+.-.+.-+...|+ .|.|...++|+..++
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 222 222 22222 122 3444444677655554555544 345656788888764
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.22 Score=54.82 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=69.2
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-----HHHHHcCCccc---CHHHhccc-cCEEEEeCCCChh
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-----DRARATGVGLV---SFEEAIST-ADFISLHMPLTPA 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~a~~~g~~~~---~l~ell~~-aD~V~l~~Plt~~ 259 (595)
++.||++.|+|.|.+|.++|+.|++.|++|.++|..... ....+.|+... ...+++.. +|+|+...-..+.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 367899999999999999999999999999999975411 22334465432 23344554 8988875522111
Q ss_pred c----------cccccHHHH-hcC-CCceEEEeccCCchhcHHHHHHHHhc
Q 046427 260 T----------SKMFNDEAF-FKM-KKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 260 t----------~~li~~~~l-~~m-k~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
. ..++.+.++ ..+ +...+-|--+.|+.-...-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 1 122333333 223 33345555558888666666666754
|
|
| >cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.071 Score=38.82 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=41.9
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC-CcHHHHHHH
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE-PSREVLKKI 581 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~-~~~e~l~~L 581 (595)
.+...|+||.+.++.+.|.++++||..+...........-+.+.++.. ..+.++++|
T Consensus 2 ~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 59 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred EEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHh
Confidence 356678999999999999999999999998765434455556666665 334555544
|
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.058 Score=60.56 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=47.8
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH---HHHHHc--CCccc--C-HHHhccccCEEEEe
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA---DRARAT--GVGLV--S-FEEAISTADFISLH 253 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~--g~~~~--~-l~ell~~aD~V~l~ 253 (595)
+.+++|.|+|+|..|.++|+.|+..|.+|.++|..... ....+. |++.. + ..+.+..+|+|+..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 56889999999999999999999999999999975421 222333 44322 1 24556789999986
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.12 Score=54.26 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=72.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHH-cCCcc------------cCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARA-TGVGL------------VSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~-~g~~~------------~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+|+|.|.||+-+|-.|...|.+|..+++.. ..+...+ .|+.. ..-.+....+|+|++|+-..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 479999999999999999999999999998864 3332222 23311 01122346789999998633
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEE
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAAL 306 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~l 306 (595)
++...+ +.....+.+++.++-+-- ++-.++.+.+.+...++.++..
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQN-Gv~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQN-GLGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeC-CCCCHHHHHHhCCCCcEEEEEe
Confidence 244333 233445677777666533 4446677788887777765443
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.16 Score=51.84 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=58.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM 272 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~m 272 (595)
-++-|+|-|.+++.+|+.++.+|++|.++|++.... . ...+..++.+....| .+.+..+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~--~---------~~~~~~~~~~~~~~~----------~~~~~~~ 159 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF--P---------EDLPDGVATLVTDEP----------EAEVAEA 159 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc--c---------ccCCCCceEEecCCH----------HHHHhcC
Confidence 379999999999999999999999999999864211 0 011123443322222 1222335
Q ss_pred CCceEEEeccCCchhcHHHHHHHHhc
Q 046427 273 KKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 273 k~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.+...+|=+.++.-.|.+.|..+|+.
T Consensus 160 ~~~t~vvi~th~h~~D~~~L~~aL~~ 185 (246)
T TIGR02964 160 PPGSYFLVLTHDHALDLELCHAALRR 185 (246)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHhC
Confidence 56777777888888899999999843
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.053 Score=56.75 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=42.0
Q ss_pred EEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHHc---------CC----cc-cCHHHhccccCEEEEeCC
Q 046427 195 LAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARAT---------GV----GL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g~----~~-~~l~ell~~aD~V~l~~P 255 (595)
|+|||.|.+|..+|..+...|. +|+.+|.+.....+... +. .. .+. +.+++||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999886554 99999987532211111 11 11 244 45899999999874
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.065 Score=59.49 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=70.5
Q ss_pred ecCCEEEEEeCChHHHH-HHHHHhcCCCEEEEECCCCcH--HHHHHcCCccc--CHHHhccccCEEEEeCCCChh---c-
Q 046427 190 LVGKTLAVMGFGKVGTE-VARRAKGLGMNVIAHDPYAQA--DRARATGVGLV--SFEEAISTADFISLHMPLTPA---T- 260 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~~---t- 260 (595)
..+|++.|+|+|..|.+ +|+.|+..|++|.++|..... +...+.|+... .-.+.+.++|+|++.--..+. .
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 46789999999999999 799999999999999976532 22344566542 123456789998875422221 1
Q ss_pred ------cccccHHHH-hc-CCC-ceEEEeccCCchhcHHHHHHHHhcC
Q 046427 261 ------SKMFNDEAF-FK-MKK-GVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 261 ------~~li~~~~l-~~-mk~-gailiN~arg~~vd~~aL~~aL~~g 299 (595)
..+++..++ .. +++ -.+-|--+-|+.-...-+.+.|+..
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~ 132 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA 132 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 123444333 22 332 3455555578886666666667644
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.11 Score=54.52 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=58.1
Q ss_pred CEEEEEeCChHHHHHHHHHhc-CCCEEEE-ECCCCc---HHHHHHcCCcc--cCHHHhcc-----ccCEEEEeCCCChhc
Q 046427 193 KTLAVMGFGKVGTEVARRAKG-LGMNVIA-HDPYAQ---ADRARATGVGL--VSFEEAIS-----TADFISLHMPLTPAT 260 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~---~~~a~~~g~~~--~~l~ell~-----~aD~V~l~~Plt~~t 260 (595)
.++||||.|+||...+..+.. -++++.+ +|++.. ...+++.|+.. .+++++++ +.|+|+.++|... .
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~-H 83 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA-H 83 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH-H
Confidence 579999999999997777664 4577664 565542 24567788764 37888884 5899999998421 1
Q ss_pred cccccHHHHhcCCCceEEEecc
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~a 282 (595)
. +-.....+.|+.+|+-+
T Consensus 84 ~----e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 84 V----RHAAKLREAGIRAIDLT 101 (302)
T ss_pred H----HHHHHHHHcCCeEEECC
Confidence 1 11222357788888876
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.066 Score=59.76 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=69.3
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH--HHHHcCCccc---CHHHhccccCEEEEeC--CC-Chhc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD--RARATGVGLV---SFEEAISTADFISLHM--PL-TPAT 260 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g~~~~---~l~ell~~aD~V~l~~--Pl-t~~t 260 (595)
++.+|++.|+|+|..|+++|+.|...|.+|.++|+..... ...+.|+... ...+.+.++|+|+..- |. .++.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 5788999999999999999999999999999999764321 1234576543 1234567899988753 22 2211
Q ss_pred -------cccccHHHHhc-------C-CC-ceEEEeccCCchhcHHHHHHHHhc
Q 046427 261 -------SKMFNDEAFFK-------M-KK-GVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 261 -------~~li~~~~l~~-------m-k~-gailiN~arg~~vd~~aL~~aL~~ 298 (595)
..++.+-.+.. + ++ ..+-|--+-|+.-...-+.+.|+.
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~ 145 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQE 145 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 12223323321 1 12 244444447887666666666764
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.067 Score=57.22 Aligned_cols=92 Identities=14% Similarity=0.266 Sum_probs=56.8
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcC-CCEEEE-ECCCCcHH-HHHHcC-C------cccCHHH-hccccCEEEEeCCCChhc
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGL-GMNVIA-HDPYAQAD-RARATG-V------GLVSFEE-AISTADFISLHMPLTPAT 260 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~-~a~~~g-~------~~~~l~e-ll~~aD~V~l~~Plt~~t 260 (595)
++|+|+|. |.+|+.+++.+... ++++.+ +++....+ .....+ + .+.++++ .+.++|+|++|+|. ...
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~-~~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPH-GVS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCc-HHH
Confidence 58999997 99999999999876 677655 55332111 111111 1 1223332 45789999999995 333
Q ss_pred cccccHHHHhcCCCceEEEeccCCchhcH
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDE 289 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~~vd~ 289 (595)
..++. ..++.|+.+||.+-.=-.+.
T Consensus 82 ~~~v~----~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 82 MDLAP----QLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred HHHHH----HHHhCCCEEEECCcccCCCC
Confidence 33322 22467899999985444443
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.12 Score=58.53 Aligned_cols=39 Identities=33% Similarity=0.476 Sum_probs=35.1
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
+..+.+|++.|+|.|-+|++++..|...|++|+.++++.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 345789999999999999999999999999999999864
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.12 Score=54.14 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=56.1
Q ss_pred EEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHHHHHcCC----------cc--cCHHHhccccCEEEEeCCCChhc
Q 046427 195 LAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADRARATGV----------GL--VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~g~----------~~--~~l~ell~~aD~V~l~~Plt~~t 260 (595)
|+|||.|.+|..+|..+...| .++..+|.+........... .. .+-.+.+++||+|+++... +..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~-p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGA-PRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCC-CCC
Confidence 589999999999999998777 58999998764322211110 11 1114689999999999874 222
Q ss_pred ccc------------cc--HHHHhcCCCceEEEecc
Q 046427 261 SKM------------FN--DEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 261 ~~l------------i~--~~~l~~mk~gailiN~a 282 (595)
.++ +. ...+....|.+++++++
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 221 10 11233445788899887
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.079 Score=56.52 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=43.7
Q ss_pred EEEEEeCChHHHH-HHHHHhc-CCCEEEE-ECCCCcHHHHHHc-CCc-ccCHHHhcc--ccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTE-VARRAKG-LGMNVIA-HDPYAQADRARAT-GVG-LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~-vA~~l~~-~G~~V~~-~d~~~~~~~a~~~-g~~-~~~l~ell~--~aD~V~l~~Pl 256 (595)
++||||+|.||+. .+..++. -++++.+ +|++.... .... +.. +.+++++++ +.|+|++|+|.
T Consensus 6 rvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 6 RVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKV-KADWPTVTVVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred eEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHH-HhhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 7999999999984 5666654 4688775 67764322 2222 332 358999996 57999999994
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.56 Score=49.51 Aligned_cols=65 Identities=25% Similarity=0.424 Sum_probs=50.1
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCc-HH-------HHHHcC-Cc-ccCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQ-AD-------RARATG-VG-LVSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~-------~a~~~g-~~-~~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||- +++..+++..+..+|++|....|... .+ .+++.| +. ..++++.+++||+|..-
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 478999999998 79999999999999999999887541 11 122233 23 24899999999999883
|
|
| >cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.085 Score=43.16 Aligned_cols=60 Identities=12% Similarity=0.274 Sum_probs=43.3
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecC--CCcEEEEEEcCCCCc----HHHHHHHhcC
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAP--QKQAVMTIGVDEEPS----REVLKKIGET 584 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~--g~~al~vi~~d~~~~----~e~l~~L~~~ 584 (595)
+++.-+|+||.++.|.+.++++++||..++ +|... .++....++++.... +++++.|++.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~-Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIE-SRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEE-eeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 455667899999999999999999999995 45333 344566677776422 2567777663
|
ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.069 Score=57.68 Aligned_cols=61 Identities=28% Similarity=0.386 Sum_probs=45.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHH--HHcCC--ccc---CHHHhccccCEEEE
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA--RATGV--GLV---SFEEAISTADFISL 252 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g~--~~~---~l~ell~~aD~V~l 252 (595)
.++|||||-|..|+.++..++.+|++|+++|++...... ...-+ .+. .+.++++.||+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 378999999999999999999999999999987532111 11101 122 36778899999864
|
|
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.62 Score=49.66 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=63.7
Q ss_pred eecCCEEEEEeCC--hHHHHHHHHHhcCCCEEEEECCCC--c-HH-------HHHHcCCc--c-cCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGFG--KVGTEVARRAKGLGMNVIAHDPYA--Q-AD-------RARATGVG--L-VSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~-~~-------~a~~~g~~--~-~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||=+ ++.++++..+..+|++|....|.. . .+ .+...|.. . .++++.++++|+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999976 789999999999999999887643 1 11 12233532 2 4899999999999885
Q ss_pred C------CCC--hh-----ccccccHHHHhcC-CCceEEEecc
Q 046427 254 M------PLT--PA-----TSKMFNDEAFFKM-KKGVRIVNVA 282 (595)
Q Consensus 254 ~------Plt--~~-----t~~li~~~~l~~m-k~gailiN~a 282 (595)
. ... ++ -...++.+.++.. |++++|.-|.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 3 100 00 1233566666664 6777777775
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.12 Score=53.90 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=33.3
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~ 225 (595)
.+.||++.|+|.|-+|++++..+...|.+ |..++++.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999999999999999999999985 99999864
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.053 Score=50.44 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=45.0
Q ss_pred CEEEEEeC-ChHHHHHHHHHh--cCCCEEEEECCCCcHHH--HHHc-------CC--c-ccCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGF-GKVGTEVARRAK--GLGMNVIAHDPYAQADR--ARAT-------GV--G-LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~--~~G~~V~~~d~~~~~~~--a~~~-------g~--~-~~~l~ell~~aD~V~l~~P 255 (595)
.+|+|||. |.+|+.+|..+. .++-++..||....... +.++ .. . .....+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 37999999 999999999987 45568999998742211 1111 01 1 1256788999999999883
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.16 Score=52.85 Aligned_cols=84 Identities=17% Similarity=0.263 Sum_probs=56.1
Q ss_pred EEEEEeCChHHHHHHHHHhc-CCCEEEE-ECCCCc---HHHHHHcCCcc--cCHHHhcc--ccCEEEEeCCCChhccccc
Q 046427 194 TLAVMGFGKVGTEVARRAKG-LGMNVIA-HDPYAQ---ADRARATGVGL--VSFEEAIS--TADFISLHMPLTPATSKMF 264 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~---~~~a~~~g~~~--~~l~ell~--~aD~V~l~~Plt~~t~~li 264 (595)
++||||.|+||+..+..+.. -++++.+ +|++.. ...+++.|+.. .+.+++++ +.|+|++++|... -.
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~-H~--- 78 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKA-HA--- 78 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHH-HH---
Confidence 79999999999988776664 4577665 566552 24567778753 36888885 5788999998432 11
Q ss_pred cHHHHhcCCCceEEEecc
Q 046427 265 NDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~a 282 (595)
+-....++.|..+++-.
T Consensus 79 -e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 79 -RHARLLAELGKIVIDLT 95 (285)
T ss_pred -HHHHHHHHcCCEEEECC
Confidence 11223356677776654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.6 Score=47.52 Aligned_cols=183 Identities=19% Similarity=0.152 Sum_probs=116.1
Q ss_pred hCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC
Q 046427 137 EHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM 216 (595)
Q Consensus 137 ~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~ 216 (595)
+..|.|.|+- -..+|=.+++-+++.+| ..|..|+..+|.+.|.|.-|-.+++.+++.|+
T Consensus 165 ~~~IPvFhDD---qqGTaiv~lA~llnalk------------------~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~ 223 (432)
T COG0281 165 RMNIPVFHDD---QQGTAIVTLAALLNALK------------------LTGKKLKDQKIVINGAGAAGIAIADLLVAAGV 223 (432)
T ss_pred cCCCCccccc---ccHHHHHHHHHHHHHHH------------------HhCCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence 4568887764 23456677888887777 35778999999999999999999999999998
Q ss_pred ---EEEEECCCC--cHH------------HHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEE
Q 046427 217 ---NVIAHDPYA--QAD------------RARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 217 ---~V~~~d~~~--~~~------------~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili 279 (595)
+|+.+|+.- ... .+.+..-.+.+ ++.+..+|+++=+- ..+.+.++.++.|.+..++.
T Consensus 224 ~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma~~PiIf 297 (432)
T COG0281 224 KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMAKHPIIF 297 (432)
T ss_pred CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhccCCEEe
Confidence 588888652 100 01000001111 55888999986653 23899999999999999999
Q ss_pred eccCCchh-cHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHH-----HHHHHHHHHHHHH
Q 046427 280 NVARGGVV-DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQ-----EGVAIEIAEAVIG 353 (595)
Q Consensus 280 N~arg~~v-d~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~-----~~~~~~~~~~l~~ 353 (595)
=.|--..- ..++..++=....|.+.|. | +.|- +.-|+++-|.++-....++ +.|-..+++.|.+
T Consensus 298 alaNP~pEi~Pe~a~~~~~~aaivaTGr------s---d~Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~ 367 (432)
T COG0281 298 ALANPTPEITPEDAKEWGDGAAIVATGR------S---DYPN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIAD 367 (432)
T ss_pred ecCCCCccCCHHHHhhcCCCCEEEEeCC------C---CCcc-cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHh
Confidence 88854432 2333333322225544432 1 2222 5678999998864222111 3344555666666
Q ss_pred HHc
Q 046427 354 ALK 356 (595)
Q Consensus 354 ~l~ 356 (595)
+.+
T Consensus 368 ~~~ 370 (432)
T COG0281 368 LAR 370 (432)
T ss_pred hcc
Confidence 654
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.096 Score=55.98 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=33.0
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5899999999999999999999999998 88888875
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.18 Score=53.24 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=64.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHH--HH----Hc---C---Ccc-cCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADR--AR----AT---G---VGL-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~----~~---g---~~~-~~l~ell~~aD~V~l~~Plt 257 (595)
.+|+|||.|.+|..+|..+...| -++..||.+..... +. .. . +.. .+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 48999999999999999887555 48999997653211 11 11 0 111 24554 89999999965432
Q ss_pred h---hccc-cc--cH-------HHHhcCCCceEEEeccCCchhcH--HHHHHH--HhcCCeeEE
Q 046427 258 P---ATSK-MF--ND-------EAFFKMKKGVRIVNVARGGVVDE--EALVRA--LDSGIISQA 304 (595)
Q Consensus 258 ~---~t~~-li--~~-------~~l~~mk~gailiN~arg~~vd~--~aL~~a--L~~g~i~ga 304 (595)
. +++. ++ |. +.+....+.+++++++ ..+|. ..+.+. +...++.|.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEec
Confidence 1 2331 11 11 2344457788999987 33342 223333 444455554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.077 Score=57.59 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=61.6
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcC-CCEEEEECCCCcH-HHHHHcC-------Cc-ccCHH-HhccccCEEEEeCCCCh
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGL-GMNVIAHDPYAQA-DRARATG-------VG-LVSFE-EAISTADFISLHMPLTP 258 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~~~~-~~a~~~g-------~~-~~~l~-ell~~aD~V~l~~Plt~ 258 (595)
.-++|+|+|. |.+|+.+.+.|... ++++..+...... ....... .. ..+++ +.++++|+|++|+|. .
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~-~ 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH-G 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH-H
Confidence 4458999998 99999999999977 6788876543211 1101101 11 11222 225889999999994 3
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhcHHHHHH
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~ 294 (595)
....++ ..|+.|+.+||.+..-..+.++.++
T Consensus 116 ~s~~i~-----~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 116 TTQEII-----KALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred HHHHHH-----HHHhCCCEEEEcCchhccCCcccch
Confidence 344443 3356789999998665555444333
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.19 Score=53.31 Aligned_cols=46 Identities=28% Similarity=0.447 Sum_probs=38.0
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 236 (595)
.|++|.|+|.|.+|...++.++..|. +|++.|... ..+.++++|+.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 58899999999999999999999998 688888765 44566677753
|
|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.045 Score=53.59 Aligned_cols=45 Identities=13% Similarity=0.274 Sum_probs=36.3
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecC--CCcEEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAP--QKQAVMT 566 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~--g~~al~v 566 (595)
+.+.+.-.|+||++..|+..|++++|||.+++...... .+..++.
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~ 142 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLH 142 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEE
Confidence 56667889999999999999999999999999965442 4444444
|
|
| >PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.98 Score=50.93 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=46.6
Q ss_pred eecCCEEEEEeC---ChHHHHHHHHHhcCC-CEEEEECCCC---cH---HHHHHcCCc---ccCHHHhccccCE
Q 046427 189 SLVGKTLAVMGF---GKVGTEVARRAKGLG-MNVIAHDPYA---QA---DRARATGVG---LVSFEEAISTADF 249 (595)
Q Consensus 189 ~l~gktvGIIGl---G~IG~~vA~~l~~~G-~~V~~~d~~~---~~---~~a~~~g~~---~~~l~ell~~aD~ 249 (595)
.+.|++|++||= +++..+++..+..|| |+|....|.. +. +.+++.|.. ..++++.+++||+
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 477999999998 689999999999998 9999887643 22 223344542 2489999999995
|
|
| >PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.066 Score=49.59 Aligned_cols=80 Identities=30% Similarity=0.427 Sum_probs=49.0
Q ss_pred EEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCC
Q 046427 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKK 274 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~ 274 (595)
+-|+|-|.+++++++.++.+|++|.++|++.. .++.++-+ .+.+. ++.. +.+ .+.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----------------~~~~~~~~-~~~~~-~~~~-----~~~-~~~~ 56 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----------------RFPEADEV-ICIPP-DDIL-----EDL-EIDP 56 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----------------C-TTSSEE-ECSHH-HHHH-----HHC--S-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----------------ccCCCCcc-EecCh-HHHH-----hcc-CCCC
Confidence 46899999999999999999999999998742 11234442 22321 1111 112 3566
Q ss_pred ceEEEeccCCchhcHHHHHHHHhcC
Q 046427 275 GVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 275 gailiN~arg~~vd~~aL~~aL~~g 299 (595)
+..+| +.++.-.|.+.|.++|+..
T Consensus 57 ~t~Vv-~th~h~~D~~~L~~~l~~~ 80 (136)
T PF13478_consen 57 NTAVV-MTHDHELDAEALEAALASP 80 (136)
T ss_dssp T-EEE---S-CCCHHHHHHHHTTSS
T ss_pred CeEEE-EcCCchhHHHHHHHHHcCC
Confidence 66666 7888888999888888774
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.035 Score=47.99 Aligned_cols=73 Identities=15% Similarity=0.268 Sum_probs=44.7
Q ss_pred CEEEEEeCChHHHHHHHHHh-cCCCEE-EEECCCCcHHHHHHcCCccc-CHHHhccc--cCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAK-GLGMNV-IAHDPYAQADRARATGVGLV-SFEEAIST--ADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~-~~G~~V-~~~d~~~~~~~a~~~g~~~~-~l~ell~~--aD~V~l~~Plt~~t~~li~~ 266 (595)
.++.|+|+|+.|++++.... ..|+++ .++|.++..--..-.|+... +++++.+. .|+-++++| .+.....+.+
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP-~~~a~~~~~~ 81 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVP-AEAAQEVADE 81 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES--HHHHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcC-HHHHHHHHHH
Confidence 47999999999999985544 455543 33444332111112255544 77777776 999999999 3444544433
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.09 Score=53.54 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=31.9
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|.+++|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5899999999999999999999998886 67777754
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.17 Score=55.78 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=44.1
Q ss_pred EEEEEeCChHHHHHHH---HH---hcCCCEEEEECCCCcH-HHH--------HHcCC----c-ccCHHHhccccCEEEEe
Q 046427 194 TLAVMGFGKVGTEVAR---RA---KGLGMNVIAHDPYAQA-DRA--------RATGV----G-LVSFEEAISTADFISLH 253 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~---~l---~~~G~~V~~~d~~~~~-~~a--------~~~g~----~-~~~l~ell~~aD~V~l~ 253 (595)
+|+|||.|.+|.+.+. .+ ...|.+|..||++... +.. ...+. . ..++.+.++.||+|+.+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence 6999999999998655 22 3346799999987532 111 11121 1 23688999999999999
Q ss_pred CCC
Q 046427 254 MPL 256 (595)
Q Consensus 254 ~Pl 256 (595)
+|.
T Consensus 82 i~~ 84 (423)
T cd05297 82 IQV 84 (423)
T ss_pred eEe
Confidence 994
|
linked to 3D####ucture |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.11 Score=57.99 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=70.8
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc------HHHHHHcCCccc--CHHHhccccCEEEEeCCCCh
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ------ADRARATGVGLV--SFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~------~~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~ 258 (595)
+..+.++++.|||.|.+|.++|+.|+..|++|.++|.... ....++.|++.. .-.+....+|+|+++.-..+
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 3457899999999999999999999999999999986531 122345576543 11124567999998874433
Q ss_pred hccc----------cccHHHH--hcCCC----ceEEEeccCCchhcHHHHHHHHhc
Q 046427 259 ATSK----------MFNDEAF--FKMKK----GVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 259 ~t~~----------li~~~~l--~~mk~----gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.+.. +++..++ ..+.+ ..+-|--+-|+.-...-+...|+.
T Consensus 91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 2221 2333222 23322 245555557887666666666654
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.31 Score=52.14 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=65.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--CCEEEE-ECCCCc--HHHHHHcCCc-ccCHHHhccccCEEEEeCCCC-hhcccccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--GMNVIA-HDPYAQ--ADRARATGVG-LVSFEEAISTADFISLHMPLT-PATSKMFN 265 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~-~d~~~~--~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt-~~t~~li~ 265 (595)
.+|||||. .+|+..++.++.. +.++.+ +|+... .+.+++.|+. +.++++++++.|++++++|.+ +...|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence 58999999 6799999888765 477766 687653 3456667875 458999999999999999842 211221
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+-..+.|+.|.-++-=--=..-+.++|+++.++..+
T Consensus 81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~ 116 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGR 116 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCC
Confidence 122333555533332111113345566666655443
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.17 Score=52.25 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=43.2
Q ss_pred EEEEEe-CChHHHHHHHHHhc-CCCEEEE-ECCCCc-H---HHHHH-----cCCcc-cCHHHhccccCEEEEeCC
Q 046427 194 TLAVMG-FGKVGTEVARRAKG-LGMNVIA-HDPYAQ-A---DRARA-----TGVGL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 194 tvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~~-~---~~a~~-----~g~~~-~~l~ell~~aD~V~l~~P 255 (595)
+|+|+| +|+||+.+++.+.. -++++.+ +|+..+ . ..... .|+.. .+++++...+|+|+.++|
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 799999 69999999999884 6888776 674321 1 11111 23433 478888667899999986
|
|
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.1 Score=47.71 Aligned_cols=65 Identities=22% Similarity=0.142 Sum_probs=47.5
Q ss_pred e-cCCEEEEEeCC-------hHHHHHHHHHhcCCCEEEEECC-C---CcHHH-------HHHcCC--c-ccCHHHhcccc
Q 046427 190 L-VGKTLAVMGFG-------KVGTEVARRAKGLGMNVIAHDP-Y---AQADR-------ARATGV--G-LVSFEEAISTA 247 (595)
Q Consensus 190 l-~gktvGIIGlG-------~IG~~vA~~l~~~G~~V~~~d~-~---~~~~~-------a~~~g~--~-~~~l~ell~~a 247 (595)
+ .|++|+|++.| ++.++++..+..||++|....| . ...+. +.+.|. . ..++++.+++|
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 68999877643 7888999999999999999988 2 22221 223453 2 24799999999
Q ss_pred CEEEEeC
Q 046427 248 DFISLHM 254 (595)
Q Consensus 248 D~V~l~~ 254 (595)
|+|..-.
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 9998743
|
|
| >cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.19 Score=41.70 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=45.2
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC---CC-cHHHHHHHhc
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE---EP-SREVLKKIGE 583 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~---~~-~~e~l~~L~~ 583 (595)
+=+...||||.+..|+..|.+.|++|.+.+++-...|+.+.-++-++. ++ +++.+++|++
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~ 66 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCA 66 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHH
Confidence 446789999999999999999999999999975567777765555533 33 4455666543
|
This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.17 Score=53.88 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=37.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCC---C-cHHHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY---A-QADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~---~-~~~~a~~~g~~ 236 (595)
.|+++.|+|.|.+|...++.++..|.+|++.++. . ..+.+++.|+.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence 5789999999999999999999999999999873 2 33445666654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.33 Score=50.73 Aligned_cols=46 Identities=37% Similarity=0.532 Sum_probs=40.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 236 (595)
.|.|++|+|||.+|.+++.-++++|. ++++.|-+. ..+.+++.|++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT 239 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT 239 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc
Confidence 58899999999999999999999996 899999887 45778888874
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.22 Score=49.62 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=32.2
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4889999999999999999999998887 58888765
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.018 Score=62.15 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=39.4
Q ss_pred HHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 170 QADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 170 ~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.+.++++-..|... .-..|.+++|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 21 ry~Rqi~l~~~g~~--~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 21 RTARQLALPGFGIE--QQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HhhcccchhhhCHH--HHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34444444445432 1135899999999999999999999999996 78888764
|
|
| >PRK06027 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.072 Score=55.55 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=40.7
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE 571 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~ 571 (595)
...+.+.-+|+||+++.|++.|+++|+||.+++..+...++.-.|.+.++-
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~ 56 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG 56 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe
Confidence 345667789999999999999999999999999987445555566555554
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.14 Score=59.19 Aligned_cols=89 Identities=17% Similarity=0.250 Sum_probs=62.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-----CH---H-HhccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-----SF---E-EAISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----~l---~-ell~~aD~V~l~~Plt~~t~ 261 (595)
.+++-|+|+|++|+.+|+.+++.|.++++.|.+.. .+.+++.|+... +. + .-+++||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 46799999999999999999999999999998763 455566676422 22 2 23568999999998665554
Q ss_pred ccccHHHHhcCCCceEEEecc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~a 282 (595)
.++ ...+.+.|+..++--+
T Consensus 480 ~i~--~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIARA 498 (621)
T ss_pred HHH--HHHHHhCCCCeEEEEE
Confidence 443 2333455665554433
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.11 Score=54.22 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=57.1
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC------------cHHH--------------HHHc--CCcc-------
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA------------QADR--------------ARAT--GVGL------- 237 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~------------~~~~--------------a~~~--g~~~------- 237 (595)
+|.|+|+|-+|..+|+.|...|. ++..+|... ..+. .++. +++.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999999986 577766321 0000 0111 1110
Q ss_pred ----------------c---CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 238 ----------------V---SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 238 ----------------~---~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
. .++++++++|+|+.++- +-+++.+++..-... +..+||.+
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~~---~k~~I~aa 140 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAAK---NKLVINAA 140 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHHh---CCcEEEEE
Confidence 0 15688999999999995 677888887655442 33777765
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.15 Score=53.74 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=47.8
Q ss_pred CEEEEEeCChHHH-HHHHHHhcCC--CEEE-EECCCCc--HHHHHHcCCc--ccCHHHhccc--cCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGT-EVARRAKGLG--MNVI-AHDPYAQ--ADRARATGVG--LVSFEEAIST--ADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~-~vA~~l~~~G--~~V~-~~d~~~~--~~~a~~~g~~--~~~l~ell~~--aD~V~l~~Pl 256 (595)
.++||||+|.+++ ..+..++..+ +++. .+|++.. ...+.+.|+. +.+++++++. .|+|++|+|.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~ 77 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPN 77 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCC
Confidence 4799999997775 4777787765 4544 4688763 3456677874 4589999986 5999999994
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.14 Score=53.53 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=33.0
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
.+.||++.|+|.|-.+++++..+...|. +|.+++|+.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 5788999999999999999999988886 799999874
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.19 Score=54.50 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=49.5
Q ss_pred hhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHh
Q 046427 133 SAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAK 212 (595)
Q Consensus 133 ~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~ 212 (595)
.+..+.|-.+...+......... ..|++ .-+.|... .-..|.+++|.|+|+|-+|+.+|+.|.
T Consensus 93 ~~W~~~g~p~~~~~~~s~~~~~~--------y~r~i-------~l~~~g~~--~q~~l~~~~VlvvG~GG~Gs~ia~~La 155 (376)
T PRK08762 93 SAWKDAGLPLERPRLLTDEQDER--------YSRHL-------RLPEVGEE--GQRRLLEARVLLIGAGGLGSPAALYLA 155 (376)
T ss_pred HHHHhcCCccccccCCCHHHHHH--------HHHhc-------chhhcCHH--HHHHHhcCcEEEECCCHHHHHHHHHHH
Confidence 45556677666665555443321 22332 22334321 113589999999999999999999999
Q ss_pred cCCC-EEEEECCC
Q 046427 213 GLGM-NVIAHDPY 224 (595)
Q Consensus 213 ~~G~-~V~~~d~~ 224 (595)
..|. ++..+|+.
T Consensus 156 ~~Gvg~i~lvD~d 168 (376)
T PRK08762 156 AAGVGTLGIVDHD 168 (376)
T ss_pred HcCCCeEEEEeCC
Confidence 9997 68888875
|
|
| >PRK13011 formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.14 Score=53.43 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=37.8
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD 570 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d 570 (595)
..+.+..+|+||+|+.|++.|.++++||.+++..-...++.=.|.++++
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~ 56 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFH 56 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEe
Confidence 4566778999999999999999999999999986223333444555654
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.15 Score=58.20 Aligned_cols=127 Identities=16% Similarity=0.201 Sum_probs=81.1
Q ss_pred CceEEeCC-CCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccce-eeecCCEEEEEeCChHHHHHHHHHhcCCC
Q 046427 139 GCLVVNAP-TANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVG-VSLVGKTLAVMGFGKVGTEVARRAKGLGM 216 (595)
Q Consensus 139 gI~V~n~p-~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~l~~~G~ 216 (595)
|-+++|-. -.+....||-++-|=|-+.| |.--.-.+ ..|++.+|.|||+|-+|..+|+.|.+.|.
T Consensus 296 ~pr~~dL~~~mdP~~la~~avdlnlkLmk-------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV 362 (664)
T TIGR01381 296 QPISVDLSKEFDPKRLAERSVDLNLKLMK-------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGV 362 (664)
T ss_pred CceEechhhhcCHHHHHHHHHHHHHHHHh-------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC
Confidence 34445433 35666778887776665554 64321112 35889999999999999999999999997
Q ss_pred -EEEEECCCC------------cHH-----------HH----HHc--CCc------c-------c-------------CH
Q 046427 217 -NVIAHDPYA------------QAD-----------RA----RAT--GVG------L-------V-------------SF 240 (595)
Q Consensus 217 -~V~~~d~~~------------~~~-----------~a----~~~--g~~------~-------~-------------~l 240 (595)
+++.+|... ..+ .+ ++. +++ . + .+
T Consensus 363 g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l 442 (664)
T TIGR01381 363 RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARL 442 (664)
T ss_pred CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHH
Confidence 566666310 000 00 011 110 0 1 24
Q ss_pred HHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 241 EEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 241 ~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.++++++|+|+.|+- +-+++.+++..-.. .+..+|+.+
T Consensus 443 ~~Li~~~DvV~d~tD-n~esR~L~n~~c~~---~~kplI~aA 480 (664)
T TIGR01381 443 EQLIKDHDVVFLLLD-SREARWLPTVLCSR---HKKIAISAA 480 (664)
T ss_pred HHHHhhCCEEEECCC-CHHHHHHHHHHHHH---hCCCEEEEE
Confidence 578999999999987 66789888765543 345667665
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.23 Score=60.10 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=46.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcC-CCE-------------EEEECCCCcHH--HHHHc-CC---cc--cCHHH---hcc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGL-GMN-------------VIAHDPYAQAD--RARAT-GV---GL--VSFEE---AIS 245 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~-G~~-------------V~~~d~~~~~~--~a~~~-g~---~~--~~l~e---ll~ 245 (595)
+.|+|+|||.|.||+.+|+.+... +.+ |.+.|++.... .+... ++ .. .+.++ +++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 467999999999999999999753 333 88889876322 22222 42 22 24444 446
Q ss_pred ccCEEEEeCCC
Q 046427 246 TADFISLHMPL 256 (595)
Q Consensus 246 ~aD~V~l~~Pl 256 (595)
++|+|+.|+|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999995
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.2 Score=50.51 Aligned_cols=174 Identities=20% Similarity=0.101 Sum_probs=115.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC-
Q 046427 138 HGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM- 216 (595)
Q Consensus 138 ~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~- 216 (595)
.+|.|.|+- -..+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 160 ~~ip~f~DD---~~GTa~v~la~l~~a~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 160 MKIPVFHDD---QHGTAIIVAAALLNGLK------------------LVGKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCCceEecC---cccHHHHHHHHHHHHHH------------------HhCCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 369999983 23455567777887777 23567888999999999999999999998898
Q ss_pred --EEEEECCCC----------cH---HHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 217 --NVIAHDPYA----------QA---DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 217 --~V~~~d~~~----------~~---~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
+++.+|+.- .. ..++.. ...+|.|+++.+|+++=.- +-+.+.++.++.|.+..+|.=.
T Consensus 219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifal 291 (763)
T PRK12862 219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFAL 291 (763)
T ss_pred cccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeC
Confidence 788888531 11 122222 2348999999999987533 2589999999999999999999
Q ss_pred cCCchh-cHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCC---------CcHHHHHHHHHHHHHH
Q 046427 282 ARGGVV-DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGA---------STTEAQEGVAIEIAEA 350 (595)
Q Consensus 282 arg~~v-d~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~---------~t~ea~~~~~~~~~~~ 350 (595)
|.-... ..++.+++=. |.|.+.|-. ..| =+.-|+++-|-++- -|++.....++.+++.
T Consensus 292 sNP~~E~~p~~a~~~~~-~~i~atGrs---~~p-------~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~ 359 (763)
T PRK12862 292 ANPTPEILPEEARAVRP-DAIIATGRS---DYP-------NQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAEL 359 (763)
T ss_pred CCCcccCCHHHHHHhcC-CEEEEECCc---CCC-------CcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhc
Confidence 865532 2333344422 456555511 111 12347777776652 3455555444444443
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.15 Score=56.63 Aligned_cols=90 Identities=16% Similarity=0.035 Sum_probs=64.3
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH--HHHc-CCccc--C-HHHhccccCEEEEeCCCChhcc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR--ARAT-GVGLV--S-FEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~-g~~~~--~-l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.+|.||+|.|||-|.++..=++.+..+|.+|.++.|....+. ..+. .+++. + ..+.++.+++|+.|+...+
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~--- 84 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA--- 84 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH---
Confidence 579999999999999999988899999999999998765432 1122 23222 1 2456788999988876443
Q ss_pred ccccHHHHhcCCCceEEEecc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~a 282 (595)
+|+......+...+++|++
T Consensus 85 --~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 --VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred --HhHHHHHHHHHcCcEEEEC
Confidence 4555555555556788875
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.087 Score=53.53 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=31.6
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|++++|.|+|+|-+|+.+|+.|...|. ++..+|+.
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5889999999999999999999998886 67777754
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.27 Score=40.44 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=44.1
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEc---C-CCC-cHHHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV---D-EEP-SREVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~---d-~~~-~~e~l~~L~~ 583 (595)
.+=+...|+||.+..|++.|.++|++|..-.++ ..|+.+.-++-+ + .++ +++.+++|++
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~ 66 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEK 66 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 455778999999999999999999999998885 455666555444 3 233 4577777764
|
This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.17 Score=46.76 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=48.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc--C----HHHhccccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV--S----FEEAISTADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~--~----l~ell~~aD~V~l~~P 255 (595)
+++++..||+| -|..+|..|+..|.+|++.|.+.. .+.+++.++..+ + --++.+.+|+|--+=|
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56789999999 899999999999999999998763 344555555322 2 2366778888877766
|
|
| >cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.28 Score=39.88 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=39.8
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE 571 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~ 571 (595)
+.+++..+|+||+.+.+++.|..+++||...++.... .|.++-.+.+..
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~-dG~~LDtF~V~d 50 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTD-DGLALDIFVVTG 50 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcC-CCeEEEEEEEec
Confidence 4678888999999999999999999999999997654 445666555444
|
This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.34 Score=53.27 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=66.6
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HH----HHH-HcCCccc---CHHHhccccCEEEEeCCCChhcc--
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--AD----RAR-ATGVGLV---SFEEAISTADFISLHMPLTPATS-- 261 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~----~a~-~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~-- 261 (595)
++.|||+|.+|.++|+.|+..|++|.++|.... .. ... ..|+... + .+.+.++|+|+..--..+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 378999999999999999999999999997542 11 111 2466542 3 455688998877542222111
Q ss_pred --------ccccHHHH--hcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 262 --------KMFNDEAF--FKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 262 --------~li~~~~l--~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
.++.+.++ ..++.-.+-|--+.|+.-...-+...|+..
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 127 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAA 127 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 12333322 234444566666689987676666777653
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.17 Score=55.90 Aligned_cols=107 Identities=21% Similarity=0.174 Sum_probs=66.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH---HHHHH--cCCccc---CHHHhccccCEEEEeCCCChhcc--
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA---DRARA--TGVGLV---SFEEAISTADFISLHMPLTPATS-- 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~--~g~~~~---~l~ell~~aD~V~l~~Plt~~t~-- 261 (595)
+-+++|+|+|.+|.++|+.|+..|++|.++|..... +...+ .|+... .-.+.+.++|+|+..--..+...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 458999999999999999999999999999975422 11222 365442 12345678998877432221111
Q ss_pred --------ccccHHH-H-hcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 262 --------KMFNDEA-F-FKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 262 --------~li~~~~-l-~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.++.+.+ + ..++.-.+-|--+.|+.-...-+...|+.
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 1233322 2 22343345555557888666666666664
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.18 Score=55.71 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=68.4
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH---HHHHH--cCCccc--C-HHHhccccCEEEEeCCCChhcc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA---DRARA--TGVGLV--S-FEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~--~g~~~~--~-l~ell~~aD~V~l~~Plt~~t~ 261 (595)
+.+|++.|+|.|.+|.++|+.|...|++|.++|..... ....+ .|+... . -++.+.++|+|+..--..+...
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 56899999999999999999999999999999976532 12222 365432 1 2345578999988544333221
Q ss_pred c----------cccHH-HHh-cCC---CceEEEeccCCchhcHHHHHHHHhc
Q 046427 262 K----------MFNDE-AFF-KMK---KGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 262 ~----------li~~~-~l~-~mk---~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
. ++.+. .+. .++ ...+-|-=+-|+.-...-+...|+.
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 1 22222 222 232 2345555557887666666666654
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.15 Score=56.84 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=67.5
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HH---HHHHcCCccc---CHHHhccccCEEEEeCCCChhc-
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--AD---RARATGVGLV---SFEEAISTADFISLHMPLTPAT- 260 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~---~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t- 260 (595)
+.||+++|+|+|.-|.+.|+.|+..|.+|+++|.... .. ...+ +.... .-.+.+.++|+|+..--..+..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p 84 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEASAQRLAAFDVVVKSPGISPYRP 84 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCChHHccCCCEEEECCCCCCCCH
Confidence 4689999999999999999999999999999996431 11 1112 32221 1235678899998754222211
Q ss_pred ---------cccccHHHH--hc-CC-----CceEEEeccCCchhcHHHHHHHHhc
Q 046427 261 ---------SKMFNDEAF--FK-MK-----KGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 261 ---------~~li~~~~l--~~-mk-----~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
..++++-++ .. ++ ...+-|--+-|+.-...-+.+.|+.
T Consensus 85 ~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 85 EALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 123444443 22 32 1345555557888666666666654
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.097 Score=46.66 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=58.7
Q ss_pred eCChHHHHHHHHHhcC----CCEEEE-ECCC--CcHHH-HH-HcCCcccCHHHhcc--ccCEEEEeCCCChhccccccHH
Q 046427 199 GFGKVGTEVARRAKGL----GMNVIA-HDPY--AQADR-AR-ATGVGLVSFEEAIS--TADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 199 GlG~IG~~vA~~l~~~----G~~V~~-~d~~--~~~~~-a~-~~g~~~~~l~ell~--~aD~V~l~~Plt~~t~~li~~~ 267 (595)
|+|.||+.+++.+... ++++.+ +|+. ..... .. .......++++++. ..|+|+=|.+..+ .. .-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~-~~----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEA-VA----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHH-HH----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchH-HH----HH
Confidence 8999999999999854 677665 5665 11111 11 12223458999998 9999999976432 22 22
Q ss_pred HHhcCCCceEEEeccCCchhc---HHHHHHHHhcC
Q 046427 268 AFFKMKKGVRIVNVARGGVVD---EEALVRALDSG 299 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd---~~aL~~aL~~g 299 (595)
....|+.|.-+|-++.+.+.| .+.|.++.+++
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~ 110 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKN 110 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHc
Confidence 334477888999988888872 44555554443
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.23 Score=52.28 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=54.0
Q ss_pred EEEEEeC-ChHHHHHHHHHhcCC-CEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhc
Q 046427 194 TLAVMGF-GKVGTEVARRAKGLG-MNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFK 271 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~ 271 (595)
+|+|+|- |-.|.++.++|.... +++........ +...+.+++++++|++++|+|. .....+... +
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~-~~s~~~~~~--~-- 69 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPD-DAAREAVSL--V-- 69 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCH-HHHHHHHHH--H--
Confidence 7999997 999999999999764 56666533221 2223567888899999999994 344444422 2
Q ss_pred CCCceEEEecc
Q 046427 272 MKKGVRIVNVA 282 (595)
Q Consensus 272 mk~gailiN~a 282 (595)
.+.|+.+||.|
T Consensus 70 ~~~g~~VIDlS 80 (310)
T TIGR01851 70 DNPNTCIIDAS 80 (310)
T ss_pred HhCCCEEEECC
Confidence 35689999987
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.16 Score=52.84 Aligned_cols=95 Identities=24% Similarity=0.307 Sum_probs=70.0
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCc---------------cc----------CH
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVG---------------LV----------SF 240 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~---------------~~----------~l 240 (595)
+-...+.++-++|+|-+|-..+-..+..|+-|..+|-... .+.-++.|.+ .. -+
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 3456777889999999999999999999999999986542 2222222221 11 14
Q ss_pred HHhccccCEEEEe--CCCChhccccccHHHHhcCCCceEEEecc
Q 046427 241 EEAISTADFISLH--MPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 241 ~ell~~aD~V~l~--~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.+..++.|+|+.. +|-.| .-.++.++..+.||||+++||.+
T Consensus 239 a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEeh
Confidence 5678899999874 45544 45678899999999999999987
|
|
| >PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.2 Score=58.58 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=54.4
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEE--EEcCCCCc-HHHHHHHhcCCCcceEEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMT--IGVDEEPS-REVLKKIGETPAIEEFVF 592 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~v--i~~d~~~~-~e~l~~L~~~~~v~~v~~ 592 (595)
.|.+...|++|+++.|++++++.++||.++++....+++.+.+. |++.+.-. ..++.+|+++++|.+|+-
T Consensus 668 ~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R 740 (743)
T PRK10872 668 VVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR 740 (743)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEe
Confidence 35577899999999999999999999999998544435555555 44444322 289999999999999864
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.4 Score=47.09 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=47.6
Q ss_pred eecCCEEEEEeC---ChHHHHHHHHHh-cCCCEEEEECCCC---cHH---HHHHcCCc--c-cCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGF---GKVGTEVARRAK-GLGMNVIAHDPYA---QAD---RARATGVG--L-VSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGl---G~IG~~vA~~l~-~~G~~V~~~d~~~---~~~---~a~~~g~~--~-~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||= +++..+.+..+. -+|++|....|.. +.+ .+.+.|.. . .++++.+++||+|..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 588999999998 588888888766 4599998887643 222 22334532 2 4799999999999883
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.15 Score=48.54 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=47.9
Q ss_pred EEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-----c---CHHHhccccCEEEEeCCCCh
Q 046427 195 LAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-----V---SFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 195 vGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-----~---~l~ell~~aD~V~l~~Plt~ 258 (595)
|.|+|- |.+|+.+++.|...|.+|.+..|+...... ..+++. . ++.+.++.+|.|+.+++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 578895 999999999999999999999887643221 344432 1 35678889999999997544
|
... |
| >COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.13 Score=52.31 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=47.4
Q ss_pred CccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCc
Q 046427 520 EGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPS 574 (595)
Q Consensus 520 ~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~ 574 (595)
+...|.+..+|+||++++|++.|.++|.||..-.-.....++.=+|.++++..-.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~ 60 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG 60 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC
Confidence 4567888999999999999999999999999888876666778889988877654
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.23 Score=49.86 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=58.9
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHH--HHc-CCccc--C-HHHhccccCEEEEeCCCChhc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA--RAT-GVGLV--S-FEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~-g~~~~--~-l~ell~~aD~V~l~~Plt~~t 260 (595)
-.++.|++|.|||-|.++..=++.|..+|.+|.++.|....+.. ... .+++. + -.+-+..+++|+.|+...+
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~-- 97 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK-- 97 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH--
Confidence 34677999999999999999888899999999999998754421 111 23221 1 1234578888888876333
Q ss_pred cccccHHHHhcCCCceEEEec
Q 046427 261 SKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ 281 (595)
+|+......+.-.+++|+
T Consensus 98 ---vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 98 ---LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred ---HHHHHHHHHHHcCCeEEE
Confidence 334333334443455664
|
|
| >cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.37 Score=39.86 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=41.5
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC---C-CcHHHHHHHh
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE---E-PSREVLKKIG 582 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~---~-~~~e~l~~L~ 582 (595)
|=+..+|+||..+.++..|.++|+||...++... .++.++-++.+.+ . .+++.+++++
T Consensus 3 ~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~v~D~F~V~d~~~~~~~~~~~~~l~ 64 (76)
T cd04927 3 LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGRVLDLFFITDARELLHTKKRREETY 64 (76)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCEEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 3356789999999999999999999999999753 4456766555422 2 2445555443
|
This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=93.07 E-value=1.6 Score=47.55 Aligned_cols=65 Identities=29% Similarity=0.375 Sum_probs=48.9
Q ss_pred eecCCEEEEEeC-----C---hHHHHHHHHHhcCCCEEEEECCCC---cHH---H----HHHcCC--c-ccCHHHhcccc
Q 046427 189 SLVGKTLAVMGF-----G---KVGTEVARRAKGLGMNVIAHDPYA---QAD---R----ARATGV--G-LVSFEEAISTA 247 (595)
Q Consensus 189 ~l~gktvGIIGl-----G---~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~----a~~~g~--~-~~~l~ell~~a 247 (595)
.+.|++|+|+|- | ++.++++..+..+|++|....|.. ..+ . +++.|. + ..++++.+++|
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 378999999985 5 567899999999999999988752 122 1 233453 2 24899999999
Q ss_pred CEEEEe
Q 046427 248 DFISLH 253 (595)
Q Consensus 248 D~V~l~ 253 (595)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999885
|
|
| >COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.3 Score=46.37 Aligned_cols=71 Identities=17% Similarity=0.307 Sum_probs=53.9
Q ss_pred CccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC--CCcHHHHHHHhcCCCcceE
Q 046427 520 EGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE--EPSREVLKKIGETPAIEEF 590 (595)
Q Consensus 520 ~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~--~~~~e~l~~L~~~~~v~~v 590 (595)
..++|.+.-.|+||++.++..++++.|.||..+.++..+..+.+-|.+-+.. ..-+++.++|.++-.|..|
T Consensus 3 m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV 75 (163)
T COG0440 3 MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKV 75 (163)
T ss_pred ceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeE
Confidence 3467777788999999999999999999999999998776667766665555 3445666666665555544
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=93.05 E-value=2.4 Score=49.97 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=90.8
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC--
Q 046427 139 GCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM-- 216 (595)
Q Consensus 139 gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-- 216 (595)
.|.|.|+- -..+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 157 ~ipvf~DD---~qGTa~v~lA~llnal~------------------~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~ 215 (764)
T PRK12861 157 KIPVFHDD---QHGTAITVSAAFINGLK------------------VVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPV 215 (764)
T ss_pred CCCeeccc---cchHHHHHHHHHHHHHH------------------HhCCChhHcEEEEECHhHHHHHHHHHHHHcCCCh
Confidence 79999983 33456677788887777 23557888999999999999999999999998
Q ss_pred -EEEEECCCC----------cH---HHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 217 -NVIAHDPYA----------QA---DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 217 -~V~~~d~~~----------~~---~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+++.+|+.- .. ..++.. ...+|.|+++.+|+++= +. .-+.+.++.++.|.+..+|.=.|
T Consensus 216 ~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~--~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PIIFaLs 288 (764)
T PRK12861 216 ENIWVTDIEGVVYRGRTTLMDPDKERFAQET--DARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLILALA 288 (764)
T ss_pred hhEEEEcCCCeeeCCCcccCCHHHHHHHhhc--CCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEEEECC
Confidence 788888431 11 122221 23489999999998754 33 25899999999999999999988
Q ss_pred CCch
Q 046427 283 RGGV 286 (595)
Q Consensus 283 rg~~ 286 (595)
.-..
T Consensus 289 NPtp 292 (764)
T PRK12861 289 NPTP 292 (764)
T ss_pred CCCc
Confidence 6543
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.3 Score=50.84 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=60.8
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcC---C--cccCHHHh--ccccCEEEEeCCCC
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATG---V--GLVSFEEA--ISTADFISLHMPLT 257 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g---~--~~~~l~el--l~~aD~V~l~~Plt 257 (595)
....|+++.|+|.|-.+++++..|+..|. +|.+++|.... +.+...+ . ....+.++ +.++|+|+-++|.-
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 35678999999999999999999999995 79999997632 2222222 1 12222222 22689999999864
Q ss_pred hhcc---ccccHHHHhcCCCceEEEeccCCc
Q 046427 258 PATS---KMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 258 ~~t~---~li~~~~l~~mk~gailiN~arg~ 285 (595)
-.-. ..++ ...++++.++.|+-=.+
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P 229 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYNP 229 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccCC
Confidence 3221 1222 33456666766665433
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.18 Score=49.57 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=33.5
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35899999999999999999999999997 588888653
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.47 Score=50.12 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=43.9
Q ss_pred CEEEEEeC-ChHHHHHHHHHh---cCCCEEEEECCCCcHH----HHHHcC--C--c---ccCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGF-GKVGTEVARRAK---GLGMNVIAHDPYAQAD----RARATG--V--G---LVSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~---~~G~~V~~~d~~~~~~----~a~~~g--~--~---~~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|||. |.||+++|..+. ..+.++..+|+..... ...+.+ . . ..++.+.+++||+|++|+-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 58999999 999999998774 3456888998754210 011111 1 1 12566888999999998864
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.25 Score=56.62 Aligned_cols=69 Identities=19% Similarity=0.345 Sum_probs=50.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HH-HHHHcCC--cccC---HHHhccccCEEEEeCCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-AD-RARATGV--GLVS---FEEAISTADFISLHMPLT 257 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~-~a~~~g~--~~~~---l~ell~~aD~V~l~~Plt 257 (595)
....|+|||||-|..|+.+++.++.+|++|+.+|+... .. ......+ .+.+ +.++++++|+|+.+....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 37789999999999999999999999999999998653 11 1111111 1223 566788899998765543
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.18 Score=52.56 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=31.4
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|++++|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4899999999999999999999998886 67777654
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.36 Score=53.11 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=66.2
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH--HHHHcCCccc---CHHHhccccCEEEEeCCCChhccc--
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD--RARATGVGLV---SFEEAISTADFISLHMPLTPATSK-- 262 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~~-- 262 (595)
+.+|++.|+|+|..|.+.++.|+..|.+|.++|...... ...+.|+... .-.+.++..|+|+. .|-.+....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHHH
Confidence 568899999999999999999999999999999754321 1122365432 12345677897655 443332211
Q ss_pred ---------cccH-HHHhc-CCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 263 ---------MFND-EAFFK-MKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 263 ---------li~~-~~l~~-mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
++.. +.+.. ++.-.+-|--+.|+.-...-|.+.|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 22222 332344455557887666666667764
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.15 Score=59.62 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=63.0
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCC------cHH-------------HH----HHc--CCc-----
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYA------QAD-------------RA----RAT--GVG----- 236 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~------~~~-------------~a----~~~--g~~----- 236 (595)
.|++++|+|+|+| +|+.+|..|...|. ++..+|... ... .+ .+. .++
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4899999999999 89999999998773 677766421 000 01 111 111
Q ss_pred -c---cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhc
Q 046427 237 -L---VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVD 288 (595)
Q Consensus 237 -~---~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd 288 (595)
. .++++++.++|+|+-|+- +-+++.++++...+.-+| +|.-.+-++.+|
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~iP--~i~~~~~~g~~~ 235 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRIP--VLMATSDRGLLD 235 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCCC--EEEEcCCCCCcC
Confidence 1 147888999999999887 567899998776654332 444444334444
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.29 Score=53.91 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=48.1
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc--CCccc-----C---H-HHhccccCEEEEeCCCC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARAT--GVGLV-----S---F-EEAISTADFISLHMPLT 257 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--g~~~~-----~---l-~ell~~aD~V~l~~Plt 257 (595)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.+... +...+. ++..+ + | +.-+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 44688999999999999999999999999999877632 222222 33211 2 2 22356888888877743
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.24 Score=52.20 Aligned_cols=140 Identities=13% Similarity=0.148 Sum_probs=81.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-------------cCHHHhccccCEEEEeCCCChh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-------------VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-------------~~l~ell~~aD~V~l~~Plt~~ 259 (595)
++|.|+|.|.||+-++-+|...|..|...-+....+..++.|... ..-.+.+..+|+|++++-. -+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-YQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-cc
Confidence 479999999999999999999997777766554444455555421 1234667799999998863 34
Q ss_pred ccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE-EEEecCCCCCCCCCcccccCCcEEEcCCCCCCc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ-AALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g-a~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t 336 (595)
+...+ +......++.+.|+-.-- ++=.++.+...+...++.+ ...-....+. +..-.......+.+.+.-+...
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~~~~~il~G~~~~~a~~~~-~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQN-GLGHEEELRKILPKETVLGGVTTHGAVREG-PGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeC-CCcHHHHHHHhCCcceEEEEEeeeeeEecC-CceEEEecCCcEEEccCCCCch
Confidence 55554 334455777766653322 3334555566665554422 2211111121 1111233345677777666553
|
|
| >COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.077 Score=45.22 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=27.7
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEee
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVG 555 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~ 555 (595)
+-+.-+|+||+++.|++.|+++|+||-++.-.
T Consensus 6 ITV~GkDr~GIva~is~vLAe~~vNIldisQt 37 (90)
T COG3830 6 ITVIGKDRVGIVAAVSRVLAEHGVNILDISQT 37 (90)
T ss_pred EEEEcCCCCchhHHHHHHHHHcCCcEEEHHHH
Confidence 34567999999999999999999999988653
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.19 Score=54.46 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=43.7
Q ss_pred EEEEeCChHHHHHHHHHhcCC-C-EEEEECCCCcH-HHHHH--c--CCcc--------cCHHHhccccCEEEEeCCCC
Q 046427 195 LAVMGFGKVGTEVARRAKGLG-M-NVIAHDPYAQA-DRARA--T--GVGL--------VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G-~-~V~~~d~~~~~-~~a~~--~--g~~~--------~~l~ell~~aD~V~l~~Plt 257 (595)
|+|+|.|.+|+.+++.|...+ + +|++.|++... +...+ . .++. .+|+++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 689999999999999999765 5 89999998643 22211 1 2211 13788999999999999743
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.39 Score=50.71 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=55.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-CHH-HhccccCEEEEeCCCChhccccccHH
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-SFE-EAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-~l~-ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
.|.++.|.|.|.+|...++.++..|.+|++.++.. ..+.++++|+..+ +.. +.-+..|+++.+.... . . -..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence 37899999999999999999999999999988765 4566778886432 211 1112245555444321 1 1 123
Q ss_pred HHhcCCCceEEEecc
Q 046427 268 AFFKMKKGVRIVNVA 282 (595)
Q Consensus 268 ~l~~mk~gailiN~a 282 (595)
.++.++++..++.++
T Consensus 240 ~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 240 ALEALDRGGVLAVAG 254 (329)
T ss_pred HHHhhCCCcEEEEEe
Confidence 445566666665554
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.34 Score=49.82 Aligned_cols=45 Identities=31% Similarity=0.473 Sum_probs=36.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~g~ 235 (595)
.|+++.|+|.|.+|...++.++.+|.+ |++.|+.. ..+.+++.|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 166 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA 166 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 578999999999999999999999986 88887654 3345556664
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.33 Score=53.93 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=63.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc-CCccc--CHHHhccccCEEEEeCCCChhc------
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARAT-GVGLV--SFEEAISTADFISLHMPLTPAT------ 260 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-g~~~~--~l~ell~~aD~V~l~~Plt~~t------ 260 (595)
.||+++|+|+|.-|.+.|+.|+. |.+|+++|..... ....+. ..... .-.+.+.++|+|+..--..+..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 47899999999999999999996 9999999954321 111111 11111 1234567899987754222211
Q ss_pred ----cccccHHHH--hcCCC-ceEEEeccCCchhcHHHHHHHHhc
Q 046427 261 ----SKMFNDEAF--FKMKK-GVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 261 ----~~li~~~~l--~~mk~-gailiN~arg~~vd~~aL~~aL~~ 298 (595)
..++++-++ ..+++ ..+=|--+-|+.-...-+...|+.
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123333333 23332 234444447888666666667765
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.33 Score=52.20 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.8
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|++++|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5899999999999999999999998886 67777754
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.72 Score=50.44 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=62.3
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhc--cccCEEEEeC--CCC-hhc---ccccc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAI--STADFISLHM--PLT-PAT---SKMFN 265 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell--~~aD~V~l~~--Plt-~~t---~~li~ 265 (595)
++.|+|+|..|.++|+.|+ .|.+|.++|.........+.|+...+ ++.+ +++|+|+..- |.+ |+. +.++.
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~i~~ 79 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKNLIS 79 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEECCCCCCCCHHHHHHHHHhh
Confidence 5899999999999999999 99999999954322212334665432 2334 4689887652 221 211 22333
Q ss_pred HHHH-h-cCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 266 DEAF-F-KMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 266 ~~~l-~-~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+..+ . .++ ..+-|--+-|+.-..+-+...|+.
T Consensus 80 ~~e~~~~~~~-~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 80 EYDYFYDVMP-FSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred HHHHHHHhcC-CEEEEECCCcHHHHHHHHHHHHHH
Confidence 3222 2 243 355555567888666666666764
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.3 Score=52.18 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=42.5
Q ss_pred EEEEEeCChHHHH-HHHHHh-c-CCCEEEE-ECCCCcH-HHHHHcC-Ccc-cCHHHhcc--ccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTE-VARRAK-G-LGMNVIA-HDPYAQA-DRARATG-VGL-VSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~-vA~~l~-~-~G~~V~~-~d~~~~~-~~a~~~g-~~~-~~l~ell~--~aD~V~l~~Pl 256 (595)
++||||+|.|++. .+..+. . -++++.+ +|++... +.+.+.+ +.. .+++++++ +.|+|++|+|.
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence 7999999998863 344443 2 3578765 7876532 2233444 333 47999996 57999999994
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.54 Score=50.39 Aligned_cols=85 Identities=28% Similarity=0.350 Sum_probs=56.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHH-cCCccc-C---------HHHhcc--ccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARA-TGVGLV-S---------FEEAIS--TADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~-~g~~~~-~---------l~ell~--~aD~V~l~~Plt 257 (595)
.++.|+|.|.||.-.+..++.+|. +|++.|+.. +.+.+++ .+...+ + ..++.. .+|+++-|+. .
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~ 248 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-S 248 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-C
Confidence 399999999999999999999995 688888876 4566666 444322 1 112222 3788888776 2
Q ss_pred hhccccccHHHHhcCCCceEEEecc
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+.+ -...++..+++..++.++
T Consensus 249 ~~~----~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 249 PPA----LDQALEALRPGGTVVVVG 269 (350)
T ss_pred HHH----HHHHHHHhcCCCEEEEEe
Confidence 221 133455567776666665
|
|
| >COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.52 Score=48.76 Aligned_cols=111 Identities=16% Similarity=0.258 Sum_probs=74.9
Q ss_pred cccHHHHHhhCCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEEEEeCCeeEEEEEcceEEEeecC
Q 046427 441 LVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLE 520 (595)
Q Consensus 441 ~~nA~~iA~e~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSvgGG~i~I~~Idgf~v~~~~~ 520 (595)
-+-+..-|+.-|+++-..... +.+.|+.+++.+..+. ....+ -.+.
T Consensus 148 AIas~~aA~~YgL~il~~~I~--D~~~N~TRF~vl~r~~---------~~~~~-----------------------~~~~ 193 (279)
T COG0077 148 AIASELAAELYGLDILAENIE--DEPNNRTRFLVLSRRK---------PPSVS-----------------------DGPE 193 (279)
T ss_pred EEcCHHHHHHcCcHhHhhccc--CCCCCeEEEEEEeccC---------CCCcC-----------------------CCCc
Confidence 334455577778877665322 2345888888876310 00000 0224
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeec--CCCcEEEEEEcCCCCcH----HHHHHHhcCCC
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIA--PQKQAVMTIGVDEEPSR----EVLKKIGETPA 586 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~--~g~~al~vi~~d~~~~~----e~l~~L~~~~~ 586 (595)
-..|++.-+|+||.+-++...|+.+|||...+.- |.. .-++.+..|+++....+ ++|++|++...
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIES-RP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~ 264 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIES-RPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITE 264 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEee-cccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhhee
Confidence 5677888889999999999999999999998876 322 33466778999887766 78888877654
|
|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.19 Score=49.21 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=34.5
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEc
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV 569 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~ 569 (595)
-+.-+||||+++.|++.|.++|+||.+.+..+-...-..+|+++.
T Consensus 12 TviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~ 56 (190)
T PRK11589 12 TALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG 56 (190)
T ss_pred EEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC
Confidence 345799999999999999999999999988764433334445533
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.2 Score=44.44 Aligned_cols=35 Identities=40% Similarity=0.496 Sum_probs=31.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+++.|.|.|.+|+.+++.++..|.+|++.++..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 57899999999999999999999999999998764
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.29 Score=51.91 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=46.3
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhc--CCCEEEEECCCCcHHHHHH---c--CCccc---C---HHHhccccCEEEEeC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKG--LGMNVIAHDPYAQADRARA---T--GVGLV---S---FEEAISTADFISLHM 254 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~---~--g~~~~---~---l~ell~~aD~V~l~~ 254 (595)
-++.++|+|+|. |.||+.+|..+.. ...++..+|.......+.+ . ..... + ..+.++.||+|++++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 356779999999 9999999999884 4468999997432211111 0 11111 1 267899999999877
Q ss_pred CC
Q 046427 255 PL 256 (595)
Q Consensus 255 Pl 256 (595)
-.
T Consensus 85 G~ 86 (321)
T PTZ00325 85 GV 86 (321)
T ss_pred CC
Confidence 53
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.54 Score=47.80 Aligned_cols=83 Identities=24% Similarity=0.305 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCCEEEEECCCCc---H---HHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCce
Q 046427 204 GTEVARRAKGLGMNVIAHDPYAQ---A---DRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGV 276 (595)
Q Consensus 204 G~~vA~~l~~~G~~V~~~d~~~~---~---~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~ga 276 (595)
|..+|-.+...|..|+..||+.. . +...+.|++.+ +=.+..+.+.+.+|.+|.-..|-++. ++.+..++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 67788888899999999999763 2 23456788876 45688999999999999988787766 66888999999
Q ss_pred EEEeccCCchh
Q 046427 277 RIVNVARGGVV 287 (595)
Q Consensus 277 iliN~arg~~v 287 (595)
+|.|+..-+.+
T Consensus 112 VicnTCT~sp~ 122 (340)
T COG4007 112 VICNTCTVSPV 122 (340)
T ss_pred EecccccCchh
Confidence 99999875554
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.79 Score=48.55 Aligned_cols=104 Identities=19% Similarity=0.300 Sum_probs=68.2
Q ss_pred EEEEEeCChHHHHHHHHHhcC---CCEEEE-ECCCCc--HHHHHHcCC--c--ccCHHHhcccc--CEEEEeCCCChhcc
Q 046427 194 TLAVMGFGKVGTEVARRAKGL---GMNVIA-HDPYAQ--ADRARATGV--G--LVSFEEAISTA--DFISLHMPLTPATS 261 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~---G~~V~~-~d~~~~--~~~a~~~g~--~--~~~l~ell~~a--D~V~l~~Plt~~t~ 261 (595)
++||+|+|+|++..++.+... ++.|++ +||... .+.|...++ . +-+.++|++.. |+|.+..| +++-+
T Consensus 8 r~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~-~~qH~ 86 (351)
T KOG2741|consen 8 RWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTP-NPQHY 86 (351)
T ss_pred EEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCC-CccHH
Confidence 689999999999999998843 677665 577652 355666777 2 23899999876 99999998 44333
Q ss_pred ccccHHHHhcCCCceEEEeccCCchh-cHHHHHHHHhcCCe
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVV-DEEALVRALDSGII 301 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~v-d~~aL~~aL~~g~i 301 (595)
.+. ...+. +.-.+|+.---.--+ +.+.+++|.+...+
T Consensus 87 evv-~l~l~--~~K~VL~EKPla~n~~e~~~iveaA~~rgv 124 (351)
T KOG2741|consen 87 EVV-MLALN--KGKHVLCEKPLAMNVAEAEEIVEAAEARGV 124 (351)
T ss_pred HHH-HHHHH--cCCcEEecccccCCHHHHHHHHHHHHHcCc
Confidence 333 22222 333466654332222 35567777777655
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.52 Score=45.43 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=27.7
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
+|+|||+|.+|..+|+.+...|. ++..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999998887 588887653
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.28 Score=48.79 Aligned_cols=63 Identities=25% Similarity=0.301 Sum_probs=49.1
Q ss_pred EEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcH---HHHHHcCCccc--------CHHHhccccCEEEEeCCCC
Q 046427 195 LAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQA---DRARATGVGLV--------SFEEAISTADFISLHMPLT 257 (595)
Q Consensus 195 vGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~g~~~~--------~l~ell~~aD~V~l~~Plt 257 (595)
|.|+|. |.+|+.+++.|...+++|.+.-+..+. ......|++.+ +|.++++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 578886 999999999999999999988776532 23345676532 3778899999999999954
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.4 Score=50.54 Aligned_cols=63 Identities=13% Similarity=0.280 Sum_probs=43.5
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcCCC--EEEEECCCCcHHHH--------H---HcCC--cc--c-CHHHhccccCEEEEe
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGLGM--NVIAHDPYAQADRA--------R---ATGV--GL--V-SFEEAISTADFISLH 253 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a--------~---~~g~--~~--~-~l~ell~~aD~V~l~ 253 (595)
++|+|+|. |.+|..+|..+...|. +|+.+|+....+.+ . ..+. .. . +. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 47999998 9999999999987775 69999984311111 0 1111 11 1 33 459999999999
Q ss_pred CCC
Q 046427 254 MPL 256 (595)
Q Consensus 254 ~Pl 256 (595)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 863
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.34 Score=51.74 Aligned_cols=60 Identities=27% Similarity=0.431 Sum_probs=43.7
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-H-HHHHcCC--cccC---HHHhccccCEEEEe
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-D-RARATGV--GLVS---FEEAISTADFISLH 253 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~-~a~~~g~--~~~~---l~ell~~aD~V~l~ 253 (595)
||||||-|..|+.+++.++.+|++|+++|++... . ...+..+ .+.+ +.++++.||+|+..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5899999999999999999999999999987521 1 1111111 1223 67788899998553
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.41 Score=51.39 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=43.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHHHHHc---------C-Ccc---cCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADRARAT---------G-VGL---VSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~---------g-~~~---~~l~ell~~aD~V~l~~P 255 (595)
++|+|||.|.+|..+|-.+...+ -++..+|.+........+ + ... .+. +.+++||+|+++.-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCC
Confidence 69999999999999999988655 479999976532111111 1 111 133 44899999999854
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.5 Score=40.29 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=28.6
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
+|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999997 789998763
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.79 Score=47.74 Aligned_cols=68 Identities=24% Similarity=0.229 Sum_probs=46.8
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHc----CC---cccC---HHHhccccCEEEEeCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARAT----GV---GLVS---FEEAISTADFISLHMP 255 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~----g~---~~~~---l~ell~~aD~V~l~~P 255 (595)
.+.||++.|+|.|-.|++++-.|...|+ +|.++||+... ..+... +. ...+ +++.+..+|+|+-++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 3568999999999999999999999997 78899987532 111111 11 1112 2345667888888877
Q ss_pred C
Q 046427 256 L 256 (595)
Q Consensus 256 l 256 (595)
.
T Consensus 204 ~ 204 (283)
T PRK14027 204 M 204 (283)
T ss_pred C
Confidence 4
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.86 Score=48.48 Aligned_cols=105 Identities=18% Similarity=0.365 Sum_probs=62.4
Q ss_pred EEEEEeCChHHHHHHHHHhc--------CCCEEEE-ECCCC--------cHHHH---HHcC----C--cccCHHHhc-cc
Q 046427 194 TLAVMGFGKVGTEVARRAKG--------LGMNVIA-HDPYA--------QADRA---RATG----V--GLVSFEEAI-ST 246 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~--------~G~~V~~-~d~~~--------~~~~a---~~~g----~--~~~~l~ell-~~ 246 (595)
+|+|+|+|.+|+.+++.+.. ++.+|.+ +|+.. ..+.. .+.| . ...++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999875 5677665 34331 11111 1111 1 112456654 46
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchh-cHHHHHHHHhcC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV-DEEALVRALDSG 299 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v-d~~aL~~aL~~g 299 (595)
+|+|+=|+|... +-.-.-.-....|+.|.-+|-+..|.+. ..+.|.++.+++
T Consensus 82 ~DVvVE~t~~~~-~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~ 134 (326)
T PRK06392 82 PDVIVDVTPASK-DGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKN 134 (326)
T ss_pred CCEEEECCCCCC-cCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHc
Confidence 899999998432 1100111123446788888888887776 356666665554
|
|
| >PRK11899 prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.84 Score=47.45 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=71.1
Q ss_pred ccHHHHHhhCCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEEEEeCCeeEEEEEcceEEEeecCc
Q 046427 442 VNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEG 521 (595)
Q Consensus 442 ~nA~~iA~e~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSvgGG~i~I~~Idgf~v~~~~~~ 521 (595)
+-+...|+..|+++-..... +...|+.+++.+..+... .. . + -..+-
T Consensus 148 Ias~~aa~~YgL~il~~~Iq--D~~~N~TRF~vi~~~~~~------~~-~----------~--------------~~~~k 194 (279)
T PRK11899 148 LASRLAAELYGLDILAENIE--DADHNTTRFVVLSREADW------AA-R----------G--------------DGPIV 194 (279)
T ss_pred eCCHHHHHHcCCcchhhccc--CCcccceeEEEEecCCCC------CC-C----------C--------------CCCce
Confidence 33445677778888664332 234588888887643100 00 0 0 00123
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeee-cCCCcEEEEEEcCCCCc-H---HHHHHHhcCC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRI-APQKQAVMTIGVDEEPS-R---EVLKKIGETP 585 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~-~~g~~al~vi~~d~~~~-~---e~l~~L~~~~ 585 (595)
..+++..+|+||.+.++.+.++++|||+..++--.. ..-++.+..|+++.... + ++|++|++..
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~ 263 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFS 263 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhc
Confidence 567777789999999999999999999999886322 23345677788888643 3 4666776643
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.41 Score=50.20 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=45.7
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCccc--------CHHHhccccCEEEEeCC
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLV--------SFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~--------~l~ell~~aD~V~l~~P 255 (595)
++|.|.| .|.||+.+++.|...|++|.+.++.... ......+++.+ ++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 3788998 5999999999999999999999876422 11123354321 36778899999876543
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.23 Score=54.16 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=31.7
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|+..+|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5899999999999999999999998886 67777754
|
|
| >PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.44 Score=55.65 Aligned_cols=69 Identities=9% Similarity=0.174 Sum_probs=53.4
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEE--EEcCCCCcH-HHHHHHhcCCCcceEEEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMT--IGVDEEPSR-EVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~v--i~~d~~~~~-e~l~~L~~~~~v~~v~~i 593 (595)
|.+...|++|+++.|++.+++.++||.+++... .+++.+.+. |++.+.-.- .++.+|+++++|.+|+-+
T Consensus 629 i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 629 IKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN 700 (702)
T ss_pred EEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence 456789999999999999999999999999743 334455444 555554222 899999999999998643
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.62 Score=49.87 Aligned_cols=45 Identities=24% Similarity=0.443 Sum_probs=35.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--ADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g~ 235 (595)
.|++|.|.|.|.+|...++.++.+|.+|++.+.... .+.+++.|+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga 229 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA 229 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC
Confidence 578999999999999999999999999988765442 223345554
|
|
| >cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.53 Score=38.63 Aligned_cols=61 Identities=7% Similarity=0.174 Sum_probs=42.9
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeee-cCCCcEEEEEEcCCCCcH--HHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRI-APQKQAVMTIGVDEEPSR--EVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~-~~g~~al~vi~~d~~~~~--e~l~~L~~ 583 (595)
.+++.-+|+||.+..+.+.++++|||+..++--.. ....+....|+++..... +++++|++
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 45666688999999999999999999999886322 223356666888863222 45555554
|
ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=91.45 E-value=1 Score=49.93 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=71.6
Q ss_pred ecCCEEEEEeC----ChHHHHHHHHHhcCCC--EEEEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccc
Q 046427 190 LVGKTLAVMGF----GKVGTEVARRAKGLGM--NVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 190 l~gktvGIIGl----G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
++=++|.|||. |++|..+.+.++..|+ +|+..+|... .-.|+.. .+++++-...|++++++| .+.+..
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~----~i~G~~~~~sl~~lp~~~Dlavi~vp-~~~~~~ 79 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG----EILGVKAYPSVLEIPDPVDLAVIVVP-AKYVPQ 79 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC----ccCCccccCCHHHCCCCCCEEEEecC-HHHHHH
Confidence 55689999999 8899999999998887 7888888643 2245554 379999888999999999 444555
Q ss_pred cccHHHHhcCCCceE-EEeccCC-----chhcHHHHHHHHhcCCee
Q 046427 263 MFNDEAFFKMKKGVR-IVNVARG-----GVVDEEALVRALDSGIIS 302 (595)
Q Consensus 263 li~~~~l~~mk~gai-liN~arg-----~~vd~~aL~~aL~~g~i~ 302 (595)
.+.+ ..+ .+-.++ ++.-+-+ +...++++.+..+.+.+.
T Consensus 80 ~l~e-~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 80 VVEE-CGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred HHHH-HHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 5543 222 333344 4432211 223456777777766543
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.54 Score=49.96 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=24.6
Q ss_pred EEEEEeCChHHHHHHHHHhcC----CCEEEEECC
Q 046427 194 TLAVMGFGKVGTEVARRAKGL----GMNVIAHDP 223 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~----G~~V~~~d~ 223 (595)
+|||+|+|+||+.+.+.+... +++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 489999999999999998754 378887654
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.34 Score=53.10 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=50.2
Q ss_pred eecCccEEEEEecCCCCchhHHHhhhhcCCccccceEeee---ecCCCcEEEEEEcCCC--C-cHHHHHHHhcC
Q 046427 517 VSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGR---IAPQKQAVMTIGVDEE--P-SREVLKKIGET 584 (595)
Q Consensus 517 ~~~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r---~~~g~~al~vi~~d~~--~-~~e~l~~L~~~ 584 (595)
..+....+.+..+|+||.+.+++++++++++||..+...| ....+.+...+.++.. - ..+++++|++.
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 3455566777899999999999999999999999888764 2233456666666663 3 33788888764
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.35 Score=51.85 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=52.1
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCC---EEEEE--CCCCcHHHHHHcCC--cc--cCHHHhccccCEEEEeCCCChhc
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGM---NVIAH--DPYAQADRARATGV--GL--VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~---~V~~~--d~~~~~~~a~~~g~--~~--~~l~ell~~aD~V~l~~Plt~~t 260 (595)
...+|+|+|. |.+|+.+.+.|...++ ++... .++.... ....+. .. .+. +.+.++|+|++|+|. ...
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~-~~~~~~~~~v~~~~~-~~~~~~D~vf~a~p~-~~s 82 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKK-VTFEGRDYTVEELTE-DSFDGVDIALFSAGG-SIS 82 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCe-eeecCceeEEEeCCH-HHHcCCCEEEECCCc-HHH
Confidence 3468999997 9999999999987543 34333 2222111 111121 11 233 445899999999994 334
Q ss_pred cccccHHHHhcCCCceEEEecc
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~a 282 (595)
..+..+ ..+.|+.+||.|
T Consensus 83 ~~~~~~----~~~~g~~VIDlS 100 (344)
T PLN02383 83 KKFGPI----AVDKGAVVVDNS 100 (344)
T ss_pred HHHHHH----HHhCCCEEEECC
Confidence 444321 135799999998
|
|
| >COG4492 PheB ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.75 Score=41.97 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=55.2
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC-Cc---HHHHHHHhcCCCcceEEEEe
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE-PS---REVLKKIGETPAIEEFVFLK 594 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~-~~---~e~l~~L~~~~~v~~v~~i~ 594 (595)
.+|.+.-.|+-|+++.+...+++.++||-.++-.-.-. |.|-..+.+|-. .+ ++++++|+++++|..|..+-
T Consensus 73 ~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~-g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg 148 (150)
T COG4492 73 ITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQ-GRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG 148 (150)
T ss_pred EEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccC-ceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence 56778889999999999999999999999988764333 345444444432 22 28899999999999998763
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.62 Score=49.46 Aligned_cols=45 Identities=29% Similarity=0.439 Sum_probs=36.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|.+|.|.|.|.+|...++.++..|.+|++.+... ..+.+++.|+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 47899999999999999999999999999988765 3344444443
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.65 E-value=1.1 Score=47.56 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=29.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhc-CC-CEEEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKG-LG-MNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~ 225 (595)
.|.+|.|+|.|.||...++.++. +| .+|++.|+..
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~ 199 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ 199 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH
Confidence 47899999999999998888875 54 6899998765
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.43 Score=50.69 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=43.5
Q ss_pred EEEEEeC-ChHHHHHHHHHhcCC-------CEEEEECCCCcHH--HHHHc-----------CCc-ccCHHHhccccCEEE
Q 046427 194 TLAVMGF-GKVGTEVARRAKGLG-------MNVIAHDPYAQAD--RARAT-----------GVG-LVSFEEAISTADFIS 251 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~~G-------~~V~~~d~~~~~~--~a~~~-----------g~~-~~~l~ell~~aD~V~ 251 (595)
+|+|+|. |.+|+.+|..|...+ .++..+|.....+ ..... .+. ..++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999987644 4899999744211 11111 111 235678899999998
Q ss_pred EeCCC
Q 046427 252 LHMPL 256 (595)
Q Consensus 252 l~~Pl 256 (595)
.+.-.
T Consensus 84 ~tAG~ 88 (325)
T cd01336 84 LVGAM 88 (325)
T ss_pred EeCCc
Confidence 87654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.61 Score=50.79 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=50.8
Q ss_pred ecCCEEEEEeCCh----------HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeC
Q 046427 190 LVGKTLAVMGFGK----------VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHM 254 (595)
Q Consensus 190 l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~ 254 (595)
..|++|+|+|+.- -...+++.|...|.+|.+|||...... ..++.+. ++.+++++||.|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS--FFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh--hcCCeeeCCHHHHHHhCCEEEEcC
Confidence 3689999999943 566899999999999999999864332 3466554 7999999999999865
|
|
| >PRK14805 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=4.2 Score=42.80 Aligned_cols=65 Identities=26% Similarity=0.227 Sum_probs=46.8
Q ss_pred eecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCC--c-HH-------HHHHcCCcc---cCHHHhccccCEEEEeC
Q 046427 189 SLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYA--Q-AD-------RARATGVGL---VSFEEAISTADFISLHM 254 (595)
Q Consensus 189 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~--~-~~-------~a~~~g~~~---~~l~ell~~aD~V~l~~ 254 (595)
.+.|++|++||=+ ++.++.+..+..||++|....|.. . .+ .+++.|... .++ +.+++||+|..-.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 3789999999984 577888888999999999987743 1 11 123345542 354 5789999998833
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.71 Score=53.70 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=32.7
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY 224 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 224 (595)
-.|++|.|||.|..|.+.|..|...|++|++||+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46899999999999999999999999999999864
|
|
| >cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.65 Score=39.15 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=41.3
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeec-CCCcEEEEEEcCC--CCcHHHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIA-PQKQAVMTIGVDE--EPSREVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~-~g~~al~vi~~d~--~~~~e~l~~L~~ 583 (595)
.+.+.-+|+||.+.++.+.|+ +.||..+.-.|.. ......+++++++ .--+++++.|++
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 355678999999999999999 4556566555533 3444566678877 334578888876
|
This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.4 Score=52.39 Aligned_cols=35 Identities=34% Similarity=0.676 Sum_probs=29.2
Q ss_pred CEEEEEeCChHHHHHHHHHhc-CCCEEEE-ECCCCcH
Q 046427 193 KTLAVMGFGKVGTEVARRAKG-LGMNVIA-HDPYAQA 227 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~~ 227 (595)
.+|||.|||+||+.++|.+.. ++++|++ +||....
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~ 122 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDA 122 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCH
Confidence 489999999999999999874 8999888 6665533
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.55 Score=49.87 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=45.0
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCC--CEEEEECCCCcHHHHHHc-------CCc----ccCHHHhccccCEEEEeCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLG--MNVIAHDPYAQADRARAT-------GVG----LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~-------g~~----~~~l~ell~~aD~V~l~~P 255 (595)
..++|+|+|. |++|+.+|..+...+ -++..+|.......+.++ .+. ..++.+.+++||+|+++.-
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 3469999999 999999999988444 489999976521111110 111 1135789999999999765
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.34 Score=52.78 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=31.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|.+++|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 39 ~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 39 RLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 4889999999999999999999998886 67777753
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.29 Score=44.83 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=29.7
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
+.++|.|+|+|.+|..+|+.|...|+ ++..+|+..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 35799999999999999999998887 788888653
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.3 Score=46.31 Aligned_cols=103 Identities=20% Similarity=0.184 Sum_probs=67.5
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccC-HHHhccccCEEEEeCCCChhccc--------
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVS-FEEAISTADFISLHMPLTPATSK-------- 262 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~-l~ell~~aD~V~l~~Plt~~t~~-------- 262 (595)
|++++|||--.--..+++.|...|++|..|.-...... -.|+...+ .++.++++|+|++-+|.+.+...
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG--FTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc--cccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 68999999999999999999999999777643211010 11555444 44559999999999997664321
Q ss_pred --cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 263 --MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 263 --li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
-++++.++.|+++++ +-++. +..++-++.++..+
T Consensus 79 ~~~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi 114 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGV 114 (287)
T ss_pred CccccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCC
Confidence 145778888887654 33333 33334435555555
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.18 E-value=1.3 Score=46.69 Aligned_cols=45 Identities=31% Similarity=0.460 Sum_probs=35.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|.++.|.|.|.+|+.+++.++.+|.+|++.++.. ..+.+.+.|+
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~ 214 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGA 214 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC
Confidence 46789999999999999999999999999988764 3333444443
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.92 Score=47.66 Aligned_cols=45 Identities=36% Similarity=0.477 Sum_probs=36.0
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~g~ 235 (595)
.|.++.|+|.|.+|...++.++.+|.+ |++.++.. ..+.+++.|+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 388999999999999999999999998 99988754 2334445553
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.7 Score=51.85 Aligned_cols=107 Identities=13% Similarity=0.219 Sum_probs=68.6
Q ss_pred CEEEEEeCChHHHHH-HHHHhcCCCEEEEECCCCcH--HHHHHcCCccc--CHHHhccccCEEEEeCCCChhcc------
Q 046427 193 KTLAVMGFGKVGTEV-ARRAKGLGMNVIAHDPYAQA--DRARATGVGLV--SFEEAISTADFISLHMPLTPATS------ 261 (595)
Q Consensus 193 ktvGIIGlG~IG~~v-A~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~~t~------ 261 (595)
+++.|+|+|..|.+. |+.|+..|++|.++|..... ....+.|+... .-.+.+..+|+|+..--..+.+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 368999999999998 99999999999999975432 22345576542 23466778999987543332222
Q ss_pred ----ccccHHHH-hc-CCC-ceEEEeccCCchhcHHHHHHHHhcC
Q 046427 262 ----KMFNDEAF-FK-MKK-GVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 262 ----~li~~~~l-~~-mk~-gailiN~arg~~vd~~aL~~aL~~g 299 (595)
.++.+.++ .. ++. ..+-|--+.|+.-...-+...|+..
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 22333333 22 332 3455555578886666666677653
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.39 Score=50.95 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=43.9
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcCCC-------EEEEECCCCcHH--H--HHH--c-------CCcc-cCHHHhccccCEE
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGLGM-------NVIAHDPYAQAD--R--ARA--T-------GVGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~~--~--a~~--~-------g~~~-~~l~ell~~aD~V 250 (595)
++|+|||. |.+|..+|..+...|. ++..+|.....+ . +.+ . .+.. .+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999998886554 789999743211 1 110 0 1111 2456889999999
Q ss_pred EEeCCC
Q 046427 251 SLHMPL 256 (595)
Q Consensus 251 ~l~~Pl 256 (595)
+++.-.
T Consensus 83 vitaG~ 88 (322)
T cd01338 83 LLVGAK 88 (322)
T ss_pred EEeCCC
Confidence 998753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.12 E-value=12 Score=42.43 Aligned_cols=213 Identities=15% Similarity=0.170 Sum_probs=125.3
Q ss_pred EEEEccccccc-cChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEE
Q 046427 119 VVGRAGVGIDN-VDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAV 197 (595)
Q Consensus 119 ~I~~~g~G~d~-iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGI 197 (595)
+|+.-=.+..| +.+..--+..|.+.|+- -..+|--++|-+|+..| ..|..|...++.|
T Consensus 242 ~I~~EDf~~~~af~iL~ryr~~i~~FnDD---iQGTaaV~LAgll~A~r------------------~~g~~l~d~riv~ 300 (563)
T PRK13529 242 LLQFEDFAQKNARRILERYRDEICTFNDD---IQGTGAVTLAGLLAALK------------------ITGEPLSDQRIVF 300 (563)
T ss_pred EEehhhcCCchHHHHHHHhccCCCeeccc---cchHHHHHHHHHHHHHH------------------HhCCChhhcEEEE
Confidence 44444333333 44444455678888874 33456677888888877 2355788899999
Q ss_pred EeCChHHHHHHHHHhc----CCC-------EEEEECCCC----c---H-----HHHHHcC-C-------cccCHHHhccc
Q 046427 198 MGFGKVGTEVARRAKG----LGM-------NVIAHDPYA----Q---A-----DRARATG-V-------GLVSFEEAIST 246 (595)
Q Consensus 198 IGlG~IG~~vA~~l~~----~G~-------~V~~~d~~~----~---~-----~~a~~~g-~-------~~~~l~ell~~ 246 (595)
+|.|.-|-.+|+.+.. .|+ +++.+|..- . . ..++... . ...+|.|+++.
T Consensus 301 ~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~ 380 (563)
T PRK13529 301 LGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRN 380 (563)
T ss_pred ECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhc
Confidence 9999999999999875 577 788888642 0 0 1122111 0 11479999999
Q ss_pred c--CEEEEeCCCChhccccccHHHHhcCCC---ceEEEeccCCch---hcHHHHHHHHhcCCeeEEEEecCCCCCCCCCc
Q 046427 247 A--DFISLHMPLTPATSKMFNDEAFFKMKK---GVRIVNVARGGV---VDEEALVRALDSGIISQAALDVFTEEPPAKDS 318 (595)
Q Consensus 247 a--D~V~l~~Plt~~t~~li~~~~l~~mk~---gailiN~arg~~---vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~ 318 (595)
+ |+++=+- ..-+.+.++.++.|.+ ..+|.=.|.-.. +..++.+++-+...|.+.|.-.-..+--....
T Consensus 381 ~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~ 456 (563)
T PRK13529 381 VKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTY 456 (563)
T ss_pred cCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEe
Confidence 8 9887643 2347899999999987 789888886443 13444455544445655554211000000001
Q ss_pred ccccCCcEEEcCCCCCCcHH-----HHHHHHHHHHHHHHHHHc
Q 046427 319 KLVLHENVTVTPHLGASTTE-----AQEGVAIEIAEAVIGALK 356 (595)
Q Consensus 319 ~L~~~~nvilTPHi~~~t~e-----a~~~~~~~~~~~l~~~l~ 356 (595)
.-=+.-|+++-|-++-.... --+.|-..+|+.|.++..
T Consensus 457 ~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~ 499 (563)
T PRK13529 457 PIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVP 499 (563)
T ss_pred ccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCc
Confidence 11134578888876632111 113344445555555543
|
|
| >cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=90.11 E-value=1.2 Score=36.96 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=42.9
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEc---CC-CC-cHHHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV---DE-EP-SREVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~---d~-~~-~~e~l~~L~~ 583 (595)
.+=+..+|+||.+..|+..|.+.+++|..-+++ ..|+.+.=++-+ +. ++ +++.+++|++
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~ 66 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIK 66 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHH
Confidence 455778999999999999999999999988885 456666555444 32 34 3455566643
|
This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.11 E-value=2 Score=47.32 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=64.8
Q ss_pred ecC-CEEEEEeCChHHHHHHHHHhcC--CCEEEEECCCCcHH--HHHHcCCccc-C--HHHhccccCEEEEeCCCChhcc
Q 046427 190 LVG-KTLAVMGFGKVGTEVARRAKGL--GMNVIAHDPYAQAD--RARATGVGLV-S--FEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 190 l~g-ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~--~a~~~g~~~~-~--l~ell~~aD~V~l~~Plt~~t~ 261 (595)
+.+ |++.|+|+|..|.+.++.+... |++|.++|...... ...+.|++.. . -.+.+.++|+|+..--..+...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p 83 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALATP 83 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCCH
Confidence 345 7899999999999999999866 58999999654211 1112266542 1 2244578998877542222111
Q ss_pred ----------ccccHHHH--hcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 262 ----------KMFNDEAF--FKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 262 ----------~li~~~~l--~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.++.+.++ ..++.-.+-|--+-|+.-...-+...|+.
T Consensus 84 ~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 84 EIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 12332222 23443445555557887666666666654
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=1.9 Score=47.75 Aligned_cols=105 Identities=16% Similarity=0.243 Sum_probs=65.7
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH------HHHHHcCCccc---CHH-----HhccccCEEEEeCCCChh
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA------DRARATGVGLV---SFE-----EAISTADFISLHMPLTPA 259 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~---~l~-----ell~~aD~V~l~~Plt~~ 259 (595)
+|.|||+|..|.+.|+.|...|.+|.++|..... ....+.|++.. ..+ +.+.+.|.|+......+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 5899999999999999999999999999975422 11234566441 122 467889998884443332
Q ss_pred ccc----------cccHHHH--hcCCC-ceEEEeccCCchhcHHHHHHHHhc
Q 046427 260 TSK----------MFNDEAF--FKMKK-GVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 260 t~~----------li~~~~l--~~mk~-gailiN~arg~~vd~~aL~~aL~~ 298 (595)
... ++....+ ..+++ ..+-|--+.|+.-...-+.+.|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 111 2232222 23333 345555557887666666666654
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.87 Score=49.17 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=35.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--ADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g~ 235 (595)
.|++|.|.|.|.+|...++.++.+|.+|++.+.... .+.++++|+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa 224 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGA 224 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCC
Confidence 578999999999999999999999999999876532 233444453
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.83 Score=53.04 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=33.0
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
..||+|.|||-|..|...|..|+..|++|++|++..
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 469999999999999999999999999999998654
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.57 Score=49.38 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=42.7
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHH--HHHc----C------Ccc-cCHHHhccccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADR--ARAT----G------VGL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~----g------~~~-~~l~ell~~aD~V~l~~Pl 256 (595)
+|+|||.|.+|..+|..+...+. ++..+|.+..... +.++ . +.. .+-.+.+++||+|+++.-.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 58999999999999998875553 7999998653221 1111 1 111 1234789999999997653
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.3 Score=45.83 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=51.5
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc---H
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN---D 266 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~---~ 266 (595)
..|++|++||+= +.++++++..+.++.++|.++........++.....++++++||+|++.-- -++| .
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs------TlvN~Ti~ 79 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS------TLVNGTID 79 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH------HCCTTTHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee------eeecCCHH
Confidence 468999999961 137888888899999999876332111222233357899999999988431 1233 3
Q ss_pred HHHhcCCCceEEEecc
Q 046427 267 EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 267 ~~l~~mk~gailiN~a 282 (595)
..++..+++..++=.|
T Consensus 80 ~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 80 DILELARNAREVILYG 95 (147)
T ss_dssp HHHHHTTTSSEEEEES
T ss_pred HHHHhCccCCeEEEEe
Confidence 3455566565555554
|
; PDB: 3L5O_B 3NPG_A. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.65 Score=49.08 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=51.6
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCC-CEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHh
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLG-MNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
.+|+||| .|..|+.+.+.|.... +++.......... ..+.+++++++|++++|+|. .....+..+ +
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~--------~~~~~~~~~~~DvvFlalp~-~~s~~~~~~--~- 70 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD--------AAARRELLNAADVAILCLPD-DAAREAVAL--I- 70 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc--------ccCchhhhcCCCEEEECCCH-HHHHHHHHH--H-
Confidence 4799999 5999999999999765 4655543222110 12345677889999999994 334433322 2
Q ss_pred cCCCceEEEecc
Q 046427 271 KMKKGVRIVNVA 282 (595)
Q Consensus 271 ~mk~gailiN~a 282 (595)
.+.|+.+||.|
T Consensus 71 -~~~g~~VIDlS 81 (313)
T PRK11863 71 -DNPATRVIDAS 81 (313)
T ss_pred -HhCCCEEEECC
Confidence 35688999987
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.1 Score=46.65 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=29.3
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~ 225 (595)
.|+++.|+|.|.||...++.++.+|.+ |++.|...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~ 179 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP 179 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 467899999999999999999999997 55566543
|
|
| >cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.9 Score=37.51 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=43.3
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeee-cCCCcEEEEEEcCCCCcH--HHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRI-APQKQAVMTIGVDEEPSR--EVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~-~~g~~al~vi~~d~~~~~--e~l~~L~~ 583 (595)
.+++.-+|+||.+..+.+.+++++||+..++--.. ....+-...|+++..... .++++|++
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 35666678999999999999999999999886321 222345666777765543 55566554
|
ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.89 Score=48.73 Aligned_cols=45 Identities=33% Similarity=0.449 Sum_probs=36.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|.+|.|.|.|.+|...++.++..|. +|++.|... ..+.++++|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 47899999999999999999999999 699988765 3445566665
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.4 Score=45.75 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=33.0
Q ss_pred cCccEEEEEecCCCCchhHHHhhhhcCCccccceEeee
Q 046427 519 LEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGR 556 (595)
Q Consensus 519 ~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r 556 (595)
+.-+.+.+...||||++.+++.+|.++||||.++..-+
T Consensus 90 ~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~ 127 (176)
T COG2716 90 PAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRT 127 (176)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeee
Confidence 33456667789999999999999999999999999865
|
|
| >TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.82 Score=53.42 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=52.5
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEE--EEcCCCCcH-HHHHHHhcCCCcceEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMT--IGVDEEPSR-EVLKKIGETPAIEEFV 591 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~v--i~~d~~~~~-e~l~~L~~~~~v~~v~ 591 (595)
.|.+...|++|+++.|++.|+++++||.+++.... .++.+.+. |++.+...- .++.+|+++++|.+|+
T Consensus 612 ~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~ 682 (683)
T TIGR00691 612 DINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK 682 (683)
T ss_pred EEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence 35567899999999999999999999999998543 34455544 455543322 8999999999998875
|
(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. |
| >cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.78 Score=36.84 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=42.0
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeecCC-CcEEEEEEcCCC-CcHHHHHHHhc
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQ-KQAVMTIGVDEE-PSREVLKKIGE 583 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g-~~al~vi~~d~~-~~~e~l~~L~~ 583 (595)
-+.-+|+||.+.++.++|++ +.||..++-.|...+ ..-.+.+++.++ --++++++|++
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 35678999999999999999 999999988765422 223445677663 23377777765
|
This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.48 Score=46.06 Aligned_cols=63 Identities=19% Similarity=0.363 Sum_probs=41.9
Q ss_pred EEEEEeCChHHHHHHHH--HhcCCCEEEE-ECCCCcHHHHHHcCCcc---cCHHHhcc--ccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTEVARR--AKGLGMNVIA-HDPYAQADRARATGVGL---VSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~--l~~~G~~V~~-~d~~~~~~~a~~~g~~~---~~l~ell~--~aD~V~l~~Pl 256 (595)
++.|||.|++|++++.. .+..||++++ ||-.+..---+-.++.. .+|++.++ +.|+.++|+|.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 58999999999999875 3467898665 77654311001112222 24667777 68899999994
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=89.44 E-value=0.75 Score=50.89 Aligned_cols=104 Identities=17% Similarity=0.261 Sum_probs=64.6
Q ss_pred EEEEeCChHHHH-HHHHHhcCCCEEEEECCCCcH--HHHHHcCCccc--CHHHhccccCEEEEeCCCChhcc--------
Q 046427 195 LAVMGFGKVGTE-VARRAKGLGMNVIAHDPYAQA--DRARATGVGLV--SFEEAISTADFISLHMPLTPATS-------- 261 (595)
Q Consensus 195 vGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~~t~-------- 261 (595)
+-|||+|.+|.+ +|+.|+..|.+|.++|..... +..++.|+... .-.+.+.++|+|+..--..+...
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 679999999998 999999999999999976532 22344566542 12345678999987532222111
Q ss_pred --ccccHHHH--hcCC-CceEEEeccCCchhcHHHHHHHHhc
Q 046427 262 --KMFNDEAF--FKMK-KGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 262 --~li~~~~l--~~mk-~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.++++..+ ..++ .-.+-|--+.|+.-...-+...|+.
T Consensus 82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 123 (448)
T TIGR01082 82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKE 123 (448)
T ss_pred CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHH
Confidence 22333222 2233 2345555557888666666666764
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.5 Score=47.49 Aligned_cols=91 Identities=29% Similarity=0.402 Sum_probs=65.6
Q ss_pred eeeecCCEEEEEeC---ChH-------HHHHHHHHhcCCCEEEEECCCCcHHH--HHHcCCcccCHHHhccccCEEEEeC
Q 046427 187 GVSLVGKTLAVMGF---GKV-------GTEVARRAKGLGMNVIAHDPYAQADR--ARATGVGLVSFEEAISTADFISLHM 254 (595)
Q Consensus 187 g~~l~gktvGIIGl---G~I-------G~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~g~~~~~l~ell~~aD~V~l~~ 254 (595)
+..+.|.+|.++|+ |.+ ...+.+.+...|.+|.+|||+.+... ....++....+++.++.+|+|++.+
T Consensus 317 ~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~~~~~~~~~~~~~e~al~~~D~vVi~t 396 (436)
T COG0677 317 GKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPTREDGEGVTLAILEEALKDADAVVIAT 396 (436)
T ss_pred CCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchhhhhccccchhhHHHHhccCCEEEEEe
Confidence 55688999999998 444 34688889999999999999985422 2233345567999999999999987
Q ss_pred CCChhccccccHHHHhcCCCceEEEec
Q 046427 255 PLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 255 Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
- +++ ..-++.+.+..+ ..+++|+
T Consensus 397 D-H~~-fk~id~~~i~~~--~~vivDt 419 (436)
T COG0677 397 D-HSE-FKEIDYEAIGKE--AKVIVDT 419 (436)
T ss_pred c-cHH-hhcCCHHHhccC--CcEEEEC
Confidence 4 222 224677777644 5577775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 595 | ||||
| 2g76_A | 335 | Crystal Structure Of Human 3-Phosphoglycerate Dehyd | 3e-72 | ||
| 1ygy_A | 529 | Crystal Structure Of D-3-Phosphoglycerate Dehydroge | 6e-65 | ||
| 3ddn_A | 528 | Crystal Structure Of Hydroxypyruvic Acid Phosphate | 8e-65 | ||
| 1wwk_A | 307 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 2e-56 | ||
| 2ekl_A | 313 | Structure Of St1218 Protein From Sulfolobus Tokodai | 2e-41 | ||
| 2dbr_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 3e-38 | ||
| 3k5p_A | 416 | Crystal Structure Of Amino Acid-Binding Act: D-Isom | 3e-38 | ||
| 2dbq_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 2e-36 | ||
| 2d0i_A | 333 | Crystal Structure Ph0520 Protein From Pyrococcus Ho | 6e-35 | ||
| 1gdh_A | 320 | Crystal Structure Of A Nad-Dependent D-Glycerate De | 2e-31 | ||
| 2p9g_A | 410 | Crystal Structure Of Serine Bound G336v,G337v Doubl | 3e-31 | ||
| 2p9c_A | 410 | Crystal Structure Of Serine Bound G336v Mutant Of E | 3e-31 | ||
| 1psd_A | 409 | The Allosteric Ligand Site In The Vmax-Type Coopera | 9e-31 | ||
| 2ome_A | 336 | Crystal Structure Of Human Ctbp2 Dehydrogenase Comp | 1e-30 | ||
| 1hku_A | 358 | CtbpBARS: A DUAL-Function Protein Involved In Trans | 3e-29 | ||
| 1hl3_A | 358 | CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK | 4e-29 | ||
| 1mx3_A | 347 | Crystal Structure Of Ctbp Dehydrogenase Core Holo F | 5e-29 | ||
| 3gg9_A | 352 | Crystal Structure Of Putative D-3-Phosphoglycerate | 1e-28 | ||
| 2cuk_A | 311 | Crystal Structure Of Tt0316 Protein From Thermus Th | 2e-28 | ||
| 3ga0_A | 358 | Ctbp1BARS GLY172->glu Mutant Structure: Impairing N | 3e-28 | ||
| 4e5k_A | 329 | Thermostable Phosphite Dehydrogenase In Complex Wit | 3e-28 | ||
| 4e5n_A | 330 | Thermostable Phosphite Dehydrogenase In Complex Wit | 3e-28 | ||
| 1yba_A | 410 | The Active Form Of Phosphoglycerate Dehydrogenase L | 4e-28 | ||
| 3kb6_A | 334 | Crystal Structure Of D-lactate Dehydrogenase From A | 5e-28 | ||
| 2gcg_A | 330 | Ternary Crystal Structure Of Human Glyoxylate Reduc | 7e-28 | ||
| 4e5m_A | 329 | Thermostable Phosphite Dehydrogenase E175aA176R IN | 3e-27 | ||
| 3n7u_A | 351 | Nad-Dependent Formate Dehydrogenase From Higher-Pla | 3e-27 | ||
| 4e5p_A | 332 | Thermostable Phosphite Dehydrogenase A176r Variant | 3e-27 | ||
| 3naq_A | 357 | Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro | 3e-27 | ||
| 2h1s_A | 328 | Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE | 3e-27 | ||
| 4ebf_A | 334 | Semet Thermostable Phosphite Dehydrogenase Glu175-A | 6e-27 | ||
| 1sc6_A | 404 | Crystal Structure Of W139g D-3-Phosphoglycerate Deh | 9e-27 | ||
| 1j49_A | 333 | Insights Into Domain Closure, Substrate Specificity | 1e-26 | ||
| 2dld_A | 337 | D-Lactate Dehydrogenase Complexed With Nadh And Oxa | 3e-26 | ||
| 1j4a_A | 333 | Insights Into Domain Closure, Substrate Specificity | 1e-25 | ||
| 4g2n_A | 345 | Crystal Structure Of Putative D-Isomer Specific 2-H | 2e-25 | ||
| 3ba1_A | 333 | Structure Of Hydroxyphenylpyruvate Reductase From C | 6e-25 | ||
| 1dxy_A | 333 | Structure Of D-2-Hydroxyisocaproate Dehydrogenase L | 3e-24 | ||
| 4dgs_A | 340 | The Crystals Structure Of Dehydrogenase From Rhizob | 2e-22 | ||
| 2w2k_A | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 2e-22 | ||
| 2w2l_D | 348 | Crystal Structure Of The Holo Forms Of Rhodotorula | 3e-22 | ||
| 2w2k_B | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 4e-22 | ||
| 2nac_A | 393 | High Resolution Structures Of Holo And Apo Formate | 6e-22 | ||
| 2go1_A | 401 | Nad-Dependent Formate Dehydrogenase From Pseudomona | 8e-22 | ||
| 2gug_A | 401 | Nad-dependent Formate Dehydrogenase From Pseudomona | 8e-22 | ||
| 2gsd_A | 402 | Nad-dependent Formate Dehydrogenase From Bacterium | 2e-21 | ||
| 3fn4_A | 401 | Apo-form Of Nad-dependent Formate Dehydrogenase Fro | 2e-21 | ||
| 3evt_A | 324 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 2e-20 | ||
| 2yq4_A | 343 | Crystal Structure Of D-isomer Specific 2-hydroxyaci | 2e-18 | ||
| 2fss_A | 365 | Candida Boidinii Formate Dehydrogenase (Fdh) K47e M | 3e-18 | ||
| 2j6i_A | 364 | Candida Boidinii Formate Dehydrogenase (Fdh) C-Term | 3e-18 | ||
| 2o4c_A | 380 | Crystal Structure Of D-erythronate-4-phosphate Dehy | 3e-18 | ||
| 3hg7_A | 324 | Crystal Structure Of D-Isomer Specific 2-Hydroxyaci | 1e-17 | ||
| 3oet_A | 381 | D-Erythronate-4-Phosphate Dehydrogenase Complexed W | 4e-17 | ||
| 1xdw_A | 331 | Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase | 3e-14 | ||
| 4hy3_A | 365 | Crystal Structure Of A Phosphoglycerate Oxidoreduct | 1e-13 | ||
| 3gvx_A | 290 | Crystal Structure Of Glycerate Dehydrogenase Relate | 1e-12 | ||
| 3kbo_A | 315 | 2.14 Angstrom Crystal Structure Of Putative Oxidore | 9e-12 | ||
| 1qp8_A | 303 | Crystal Structure Of A Putative Formate Dehydrogena | 9e-07 |
| >pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335 | Back alignment and structure |
|
| >pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529 | Back alignment and structure |
|
| >pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528 | Back alignment and structure |
|
| >pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307 | Back alignment and structure |
|
| >pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313 | Back alignment and structure |
|
| >pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334 | Back alignment and structure |
|
| >pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416 | Back alignment and structure |
|
| >pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334 | Back alignment and structure |
|
| >pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333 | Back alignment and structure |
|
| >pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320 | Back alignment and structure |
|
| >pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409 | Back alignment and structure |
|
| >pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336 | Back alignment and structure |
|
| >pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358 | Back alignment and structure |
|
| >pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358 | Back alignment and structure |
|
| >pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347 | Back alignment and structure |
|
| >pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352 | Back alignment and structure |
|
| >pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311 | Back alignment and structure |
|
| >pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358 | Back alignment and structure |
|
| >pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329 | Back alignment and structure |
|
| >pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334 | Back alignment and structure |
|
| >pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330 | Back alignment and structure |
|
| >pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329 | Back alignment and structure |
|
| >pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351 | Back alignment and structure |
|
| >pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332 | Back alignment and structure |
|
| >pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357 | Back alignment and structure |
|
| >pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328 | Back alignment and structure |
|
| >pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334 | Back alignment and structure |
|
| >pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404 | Back alignment and structure |
|
| >pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337 | Back alignment and structure |
|
| >pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345 | Back alignment and structure |
|
| >pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333 | Back alignment and structure |
|
| >pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333 | Back alignment and structure |
|
| >pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340 | Back alignment and structure |
|
| >pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348 | Back alignment and structure |
|
| >pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348 | Back alignment and structure |
|
| >pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348 | Back alignment and structure |
|
| >pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393 | Back alignment and structure |
|
| >pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401 | Back alignment and structure |
|
| >pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401 | Back alignment and structure |
|
| >pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402 | Back alignment and structure |
|
| >pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401 | Back alignment and structure |
|
| >pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324 | Back alignment and structure |
|
| >pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343 | Back alignment and structure |
|
| >pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365 | Back alignment and structure |
|
| >pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364 | Back alignment and structure |
|
| >pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380 | Back alignment and structure |
|
| >pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324 | Back alignment and structure |
|
| >pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381 | Back alignment and structure |
|
| >pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331 | Back alignment and structure |
|
| >pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365 | Back alignment and structure |
|
| >pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290 | Back alignment and structure |
|
| >pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315 | Back alignment and structure |
|
| >pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 | Back alignment and structure |
|---|
Score = 664 bits (1714), Expect = 0.0
Identities = 193/546 (35%), Positives = 281/546 (51%), Gaps = 22/546 (4%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFE 111
S P VL+A+KL + + L + V ++L + DAL+VRS T V EV
Sbjct: 3 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLA 62
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+ A +LK+V RAGVG+DNVD+ AAT G LVVNAPT+N +AAEH +ALL A +R I A
Sbjct: 63 A-APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAA 121
Query: 172 DASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRAR 231
DAS++ W+R+ + G + GKT+ V+G G++G VA+R G V+A+DPY RA
Sbjct: 122 DASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA 181
Query: 232 ATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
G+ L+S ++ ++ ADFIS+H+P TP T+ + + EA K K GV IVN ARGG+VDE A
Sbjct: 182 QLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 241
Query: 292 LVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAV 351
L A+ G + A LDVF EP DS L V VTPHLGAST EAQ+ ++AE+V
Sbjct: 242 LADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESV 300
Query: 352 IGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASA 411
AL GE AVN E+AP++ L KLG LA L S+ V
Sbjct: 301 RLALAGEFVPDAVNVGGGVVN--EEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRGE 356
Query: 412 RGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLE 471
+ +LR +G+ + V VNA +A +RG+ + N
Sbjct: 357 LA--AEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICK---ASESPNHRS 411
Query: 472 FIQVQIANVESKFGSAISDIGDIRVEGRV--KDGKPHLTKVGSFGVDVSLEGSIILCRQV 529
+ V+ +D + V G + + ++ D+ +G ++ V
Sbjct: 412 VVDVRAVG---------ADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYV 462
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEE 589
D+PG +GK+G+LLG VN+ + A A + + +D++ +V I +
Sbjct: 463 DRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYK 522
Query: 590 FVFLKL 595
+ L
Sbjct: 523 LEVVDL 528
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307 | Back alignment and structure |
|---|
Score = 482 bits (1243), Expect = e-169
Identities = 133/307 (43%), Positives = 190/307 (61%), Gaps = 2/307 (0%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVF 110
+ VLVA L E + VLK+ V + L + +A+IVRS KVTR V
Sbjct: 2 KRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVI 61
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
ES A +LKV+ RAGVG+DN+D+ AA E G VVNAP A++ + AE + L+ ++AR IA
Sbjct: 62 ES-APKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAF 120
Query: 171 ADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA 230
AD ++ G W + + +G+ L GKT+ ++GFG++G +VA+ A LGMN++ +DPY +RA
Sbjct: 121 ADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERA 180
Query: 231 RATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEE 290
+ V E + +D +++H+PL +T + N+E MKK ++N +RG VVD
Sbjct: 181 KEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240
Query: 291 ALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEA 350
ALV+AL G I+ A LDVF EEP KD L +NV +TPH+GAST EAQE +E+AE
Sbjct: 241 ALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEK 300
Query: 351 VIGALKG 357
V+ LKG
Sbjct: 301 VVKILKG 307
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335 | Back alignment and structure |
|---|
Score = 480 bits (1239), Expect = e-168
Identities = 148/325 (45%), Positives = 200/325 (61%), Gaps = 3/325 (0%)
Query: 35 PRRRKTKRFAVLATFITSKPTVLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISL 93
+ + + VL+++ L +L++ V NLS EEL ++
Sbjct: 8 SSGVDLGTENLYFQSMANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQD 67
Query: 94 CDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAA 153
C+ LIVRS TKVT +V + A +L+VVGRAG G+DNVDL AAT G LV+N P N+++A
Sbjct: 68 CEGLIVRSATKVTADVINA-AEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSA 126
Query: 154 AEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213
AE ++ +AR I QA AS+K GKW+R K++G L GKTL ++G G++G EVA R +
Sbjct: 127 AELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQS 186
Query: 214 LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMK 273
GM I +DP + + + GV + EE DFI++H PL P+T+ + ND F + K
Sbjct: 187 FGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCK 246
Query: 274 KGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG 333
KGVR+VN ARGG+VDE AL+RAL SG + AALDVFTEEPP +D LV HENV PHLG
Sbjct: 247 KGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLG 305
Query: 334 ASTTEAQEGVAIEIAEAVIGALKGE 358
AST EAQ EIA + +KG+
Sbjct: 306 ASTKEAQSRCGEEIAVQFVDMVKGK 330
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416 | Back alignment and structure |
|---|
Score = 483 bits (1246), Expect = e-168
Identities = 115/369 (31%), Positives = 179/369 (48%), Gaps = 16/369 (4%)
Query: 33 GPPRRRKTKRFAVLATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSY---NLSPEELCT 89
GP + + + VL+ E + + ++ K+ + ++ L +L
Sbjct: 1 GPGSMTERLSLS------RDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIK 54
Query: 90 KISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTAN 149
IS + +RS T++T E+F + A RL VG VG + V+L AA + G V NAP +N
Sbjct: 55 AISSAHIIGIRSRTQLTEEIFAA-ANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSN 113
Query: 150 TIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVAR 209
T + AE I + + R I S AG W++ + GKTL ++G+G +G++V
Sbjct: 114 TRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGN 173
Query: 210 RAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAF 269
A+ LGM V +D + S +E + T+D +SLH+P + +TSK+ +
Sbjct: 174 LAESLGMTVRYYDTSDKLQYGNVKPA--ASLDELLKTSDVVSLHVPSSKSTSKLITEAKL 231
Query: 270 FKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAK----DSKLVLHEN 325
KMKKG ++N ARG VD EAL + L G ++ AA+DVF EP + + L EN
Sbjct: 232 RKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLEN 291
Query: 326 VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAE 385
V +TPH+G ST EAQE + E+ ++ AVN P V F+ + E
Sbjct: 292 VILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHE 351
Query: 386 KLGGLAVQL 394
G+ L
Sbjct: 352 NRPGILNSL 360
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333 | Back alignment and structure |
|---|
Score = 460 bits (1185), Expect = e-160
Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 8/331 (2%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFES 112
+P V V K+ L+ LK +A+V+ S EEL I D +IV TK+TREV E+
Sbjct: 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLEN 61
Query: 113 SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQAD 172
A RLKV+ G DN+DL AT+ G V + A AE + L+ + R I AD
Sbjct: 62 -AERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120
Query: 173 ASVKAGKWQRNKYVGVS------LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ 226
++ G+W+ + + L GK + ++G G +G +ARR G+ + + +
Sbjct: 121 KFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK 180
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ + + +E + +D + L +PLT T + N+E K++ G +VN+ RG +
Sbjct: 181 VNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGAL 239
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIE 346
VDE+A+ A+ G + A DVF +EP + +TPH EAQE V
Sbjct: 240 VDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFR 299
Query: 347 IAEAVIGALKGELAATAVNAPMVPAEVISEL 377
E ++ L+GE+ VN ++ I +
Sbjct: 300 AVENLLKVLRGEVPEDLVNKEVLEVRPIENV 330
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313 | Back alignment and structure |
|---|
Score = 451 bits (1162), Expect = e-157
Identities = 110/306 (35%), Positives = 169/306 (55%), Gaps = 6/306 (1%)
Query: 56 VLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA 114
L+ + + E + L+ VD +S EEL I D ++VRS TKVT++V E
Sbjct: 8 ALITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEK-G 66
Query: 115 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS 174
+LK++ RAG+G+DN+D A + VV AP A+T +A E I L+ A AR + + A
Sbjct: 67 KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL 126
Query: 175 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
K+G + K G+ L GKT+ ++GFG++GT+V A +GM V+A+D ++A
Sbjct: 127 AKSGIF--KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKIN 184
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
VS EE + +D ISLH+ ++ + + F MK V IVN +R V+ +AL+
Sbjct: 185 AKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLD 244
Query: 295 ALDSGIISQAALDVFTEEPPAKD--SKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVI 352
+ G + A DVF EPP ++ +L+ HE V VT H+GA T EAQ+ VA + ++
Sbjct: 245 YIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLL 304
Query: 353 GALKGE 358
A+K
Sbjct: 305 NAMKEL 310
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404 | Back alignment and structure |
|---|
Score = 446 bits (1150), Expect = e-153
Identities = 115/401 (28%), Positives = 184/401 (45%), Gaps = 26/401 (6%)
Query: 52 SKPTVLVAEKLGEAGLDVLKN--FANVDC-SYNLSPEELCTKISLCDALIVRSGTKVTRE 108
K L+ E + + L+ L+ + N++ L E+L I + +RS T +T +
Sbjct: 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTED 62
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNI 168
V + A +L +G +G + VDL AA + G V NAP +NT + AE I L + R +
Sbjct: 63 VINA-AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 121
Query: 169 AQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD 228
+A+A G + GK L ++G+G +GT++ A+ LGM V +D
Sbjct: 122 PEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE--NK 179
Query: 229 RARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVD 288
+ + ++ +D +SLH+P P+T M + MK G ++N +RG VVD
Sbjct: 180 LPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 239
Query: 289 EEALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHENVTVTPHLGASTTEAQEGVA 344
AL AL S ++ AA+DVF EP S L +NV +TPH+G ST EAQE +
Sbjct: 240 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIG 299
Query: 345 IEIAEAVIGALKGELAATAVNAPMVPAE--------VISELAPFV------TLAEKLGGL 390
+E+A +I +AVN P V I E P V AE+ +
Sbjct: 300 LEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNI 359
Query: 391 AVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGII 431
A Q + + + V + + + + ++A+ G I
Sbjct: 360 AAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAI--PGTI 398
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347 | Back alignment and structure |
|---|
Score = 440 bits (1133), Expect = e-152
Identities = 93/327 (28%), Positives = 153/327 (46%), Gaps = 12/327 (3%)
Query: 51 TSKPTVLVAEKL-GEAGLDVLKNFANVDCSYNLSPEELCTKI-SLCDALIVRSGTKVTRE 108
+ P V + + + +LK+ A V S +E+ K+ + ++ +TRE
Sbjct: 19 SHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTRE 78
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNI 168
E L+++ R G G DN+D+ +A + G V N P A+ A+ + + + R
Sbjct: 79 DLEK-FKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRA 137
Query: 169 AQADASVKAGKWQRN-------KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH 221
+++ G ++ + G+TL ++G G+VG VA RAK G NV+ +
Sbjct: 138 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 197
Query: 222 DPYAQADRARATGVGLVS-FEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280
DPY RA G+ VS ++ + +D ++LH L + ND +M++G +VN
Sbjct: 198 DPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257
Query: 281 VARGGVVDEEALVRALDSGIISQAALDVFTEEPP-AKDSKLVLHENVTVTPHLGASTTEA 339
ARGG+VDE+AL +AL G I AALDV EP L N+ TPH + +A
Sbjct: 258 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 317
Query: 340 QEGVAIEIAEAVIGALKGELAATAVNA 366
+ E A + A+ G + + N
Sbjct: 318 SIEMREEAAREIRRAITGRIPDSLKNC 344
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364 | Back alignment and structure |
|---|
Score = 410 bits (1057), Expect = e-140
Identities = 81/340 (23%), Positives = 139/340 (40%), Gaps = 20/340 (5%)
Query: 51 TSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRS--GTKVTRE 108
++ + +A L + G +++ L I D +I +T+E
Sbjct: 23 CTENKLGIANWLKDQGHELI-----TTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKE 77
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGC--LVVNAPTANTIAAAEHGIALLTAMAR 166
+ A +LK+V AGVG D++DL + G V+ +N ++ AEH + + + R
Sbjct: 78 RIDK-AKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVR 136
Query: 167 NIAQADASVKAGKWQRNKYV--GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY 224
N A + W+ + GKT+A +G G++G V R + + Y
Sbjct: 137 NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY 196
Query: 225 AQ--ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281
D G V + EE ++ AD ++++ PL T + N E K KKG +VN
Sbjct: 197 QALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNT 256
Query: 282 ARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVT-----VTPHLGAST 336
ARG + E + AL+SG + DV+ +P KD N +TPH +T
Sbjct: 257 ARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 316
Query: 337 TEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISE 376
+AQ A + G+ + ++ E ++
Sbjct: 317 LDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGTK 356
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351 | Back alignment and structure |
|---|
Score = 406 bits (1045), Expect = e-139
Identities = 98/334 (29%), Positives = 147/334 (44%), Gaps = 11/334 (3%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFAN---VDCSYNLSPEELCTKISLCDALIVRSG--TKVTR 107
P L + D L++ + V EL I LI VT
Sbjct: 19 NPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTA 78
Query: 108 EVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARN 167
E + A LK++ AG+G D++DL AA G V +N ++ AE + + + RN
Sbjct: 79 ERIKK-AKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRN 137
Query: 168 IAQADASVKAGKWQRN--KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225
V G+W Y L GKT+ +G G++G + +R K G N++ HD
Sbjct: 138 FVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQ 197
Query: 226 -QADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283
+ + TG V E + D I ++MPLT T MFN E K+KKGV IVN AR
Sbjct: 198 MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNAR 257
Query: 284 GGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGV 343
G +++ +A+V A++SG I + DV+ +P KD N +TPH +T +AQ
Sbjct: 258 GAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRY 317
Query: 344 AIEIAEAVIGALKGELAATAVNAPMVPAEVISEL 377
A + + KGE T + E+ +
Sbjct: 318 AAGTKDMLERYFKGEDFPTENY-IVKDGELAPQY 350
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393 | Back alignment and structure |
|---|
Score = 389 bits (1001), Expect = e-131
Identities = 83/339 (24%), Positives = 138/339 (40%), Gaps = 13/339 (3%)
Query: 50 ITSKPTVLVAEKLGEAGLDVL--KNFANVDCSYNLSP--EELCTKISLCDALIVRSG--T 103
I P L+ GE GL N + + + ++ D +I +
Sbjct: 42 IDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPA 101
Query: 104 KVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTA 163
+T E A LK+ AG+G D+VDL +A + V N+I+ AEH + ++ +
Sbjct: 102 YLTPERIAK-AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 160
Query: 164 MARNIAQADASVKAGKWQRNKYV--GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH 221
+ RN + + G W V L + + G++G V RR +++
Sbjct: 161 LVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYT 220
Query: 222 DPY-AQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV 279
D + + + + E+ D ++L+ PL P T M NDE K+G IV
Sbjct: 221 DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV 280
Query: 280 NVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEA 339
N ARG + D +A+ RAL+SG ++ A DV+ +P KD +TPH+ +T A
Sbjct: 281 NTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTA 340
Query: 340 QEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA 378
Q A E + +G +V ++
Sbjct: 341 QARYAAGTREILECFFEGRPIRDEYL--IVQGGALAGTG 377
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380 | Back alignment and structure |
|---|
Score = 388 bits (999), Expect = e-131
Identities = 82/342 (23%), Positives = 134/342 (39%), Gaps = 31/342 (9%)
Query: 57 LVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR 116
++A++ + ++ ++ D L+VRS T+V+R
Sbjct: 3 ILADENIPVVDAFFADQGSIR--RLPGRAIDRAALAEVDVLLVRSVTEVSRAALA--GSP 58
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVK 176
++ VG +G D++DL E G +AP N ++ + L AMA
Sbjct: 59 VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE---------- 108
Query: 177 AGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG 236
G L +T V+G G+VG + +GLG V+ DP +AR
Sbjct: 109 --------VRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR---QAREPDGE 157
Query: 237 LVSFEEAISTADFISLHMPLTP----ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEAL 292
VS E ++ AD ISLH PL T + ++ ++ G +VN +RG VVD +AL
Sbjct: 158 FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQAL 217
Query: 293 VRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVI 352
R L+ G + ALDV+ EP + + TPH+ + E + +I +A
Sbjct: 218 RRLLEGGADLEVALDVWEGEPQ--ADPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYC 275
Query: 353 GALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQL 394
+ + +L P A L L +
Sbjct: 276 AWRGIAERVSLQDVLPETWLAGLQLNPGCDPAWALATLCRAV 317
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352 | Back alignment and structure |
|---|
Score = 386 bits (993), Expect = e-131
Identities = 93/341 (27%), Positives = 153/341 (44%), Gaps = 20/341 (5%)
Query: 57 LVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALI-VRSGTKVTREVFESSAG 115
KL L V + +L +++ +AL+ +R T+VTR++ +
Sbjct: 13 DAVRKLDCFSLLQDHEV-KVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDR-LP 70
Query: 116 RLKVVGRAGV----GIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+LK++ + G ++DL A T+ G +V+ + +A AE AL+ A R I Q
Sbjct: 71 KLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGK-GSPVAPAELTWALVMAAQRRIPQY 129
Query: 172 DASVKAGKWQRNKY----------VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH 221
AS+K G WQ++ +G L G+TL + G+GK+G VA + GMNV+
Sbjct: 130 VASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVW 189
Query: 222 DPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280
+RARA G + S + +D +S+H+ L T + +MK VN
Sbjct: 190 GRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVN 249
Query: 281 VARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQ 340
+R +V+E +V AL+ G AA+DVF EP + L+ EN TPH+G E+
Sbjct: 250 TSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESY 309
Query: 341 EGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPFV 381
E + ++ L+G + N + +I
Sbjct: 310 EMYFGIAFQNILDILQGN-VDSVANPTALAPALIRAEGHHH 349
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290 | Back alignment and structure |
|---|
Score = 382 bits (983), Expect = e-130
Identities = 79/279 (28%), Positives = 130/279 (46%), Gaps = 15/279 (5%)
Query: 85 EELCTKISLCDALIVR----SGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGC 140
E T + D + +V ++ + R K++ G+D++D++ E+
Sbjct: 15 EIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVL-GKRTKMIQAISAGVDHIDVNGIPENVV 73
Query: 141 LVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF 200
L NA A +I+ AEH ALL A A+NI + + +KAG ++++ L GK L ++G+
Sbjct: 74 LCSNAG-AYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGY 130
Query: 201 GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPAT 260
G +G VA AK GM VIA+ + V S + +DF+ + +PLT T
Sbjct: 131 GGIGRRVAHLAKAFGMRVIAYTRSSVDQNV---DVISESPADLFRQSDFVLIAIPLTDKT 187
Query: 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKL 320
M N +K + IVNVAR VV + ++ L DV+ EP ++ L
Sbjct: 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNL 247
Query: 321 VLHENVTVTPHLGASTTEAQEGVAIEIA-EAVIGALKGE 358
N ++PH+ + +AI++A E V +GE
Sbjct: 248 ---RNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGE 283
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381 | Back alignment and structure |
|---|
Score = 368 bits (948), Expect = e-123
Identities = 81/349 (23%), Positives = 137/349 (39%), Gaps = 34/349 (9%)
Query: 51 TSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVF 110
++ +LV E + ++ V +++ DAL+VRS TKV +
Sbjct: 1 SNAMKILVDENM-PYARELFSRLGEVK--AVPGRPIPVEELNHADALMVRSVTKVNESLL 57
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
+ VG A G D+VD + + G AP N IA E+ + L +A
Sbjct: 58 S--GTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER--- 112
Query: 171 ADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA 230
G SL +T+ ++G G VG+ + R + LG+ + DP A
Sbjct: 113 ---------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR---AA 154
Query: 231 RATGVGLVSFEEAISTADFISLHMPLTP----ATSKMFNDEAFFKMKKGVRIVNVARGGV 286
R + +E + AD ++ H PL T + ++ ++K G ++N RG V
Sbjct: 155 RGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPV 214
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIE 346
VD AL+ L++G LDV+ EP + L+ ++ T H+ T E + +
Sbjct: 215 VDNAALLARLNAGQPLSVVLDVWEGEPD-LNVALLEAVDI-GTSHIAGYTLEGKARGTTQ 272
Query: 347 IAEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLV 395
+ EA + E ++PA + L + LV
Sbjct: 273 VFEAYSAFIGREQRVALET--LLPAPEFGRITLHGPLDQPTLKRLAHLV 319
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330 | Back alignment and structure |
|---|
Score = 366 bits (942), Expect = e-123
Identities = 92/328 (28%), Positives = 154/328 (46%), Gaps = 14/328 (4%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDC---SYNLSPEELCTKISLCDALIVRSGTKVTREV 109
P +++ ++ E L +L + L+ EE+ + A++ +V +
Sbjct: 2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADF 61
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
++ L+V+G A G DN D+ A T G + P T+ AE I L + R++
Sbjct: 62 LQA-CPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
Query: 170 QADASVKAGKWQ--RNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ- 226
ADA V++GK++ + ++ G L T+ +G G +G +A R +G G + H+ A
Sbjct: 121 AADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ G+ V+ E +++DFI L +PL T + N E ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 287 VDEEALVRALDSGIISQAALDVFTEE-------PPAKDSKLVLHENVTVTPHLGASTTEA 339
VDE A++ AL+ G + A DVF E P D L+ H N TPH+G++
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 340 QEGVAIEIAEAVIGALKGELAATAVNAP 367
+ + A+ ++ AL GE AVN
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVNRL 328
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334 | Back alignment and structure |
|---|
Score = 352 bits (905), Expect = e-118
Identities = 111/329 (33%), Positives = 186/329 (56%), Gaps = 12/329 (3%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREV 109
KP V + ++ E G+ +L++ V+ + + E L K+ DAL+ ++ +EV
Sbjct: 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEV 61
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
FE+ A +L++V VG DN+D+ AT+ G V N P T A A+ ALL A AR++
Sbjct: 62 FEN-APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 170 QADASVKAGKWQRNK-------YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD 222
+ D V++G+W++ ++G + GKT+ ++G G++G +A+RAKG M ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYS 180
Query: 223 PYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282
+ + R E+ + +DF+ L +PLT T + N+E MKK ++N+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240
Query: 283 RGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEG 342
RG VVD ALV+AL G I+ A LDVF EEP + +L +NV +TPH+G+++ A+EG
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREG 299
Query: 343 VAIEIAEAVIGALKGELAATAVNAPMVPA 371
+A +A+ +I +GE+ T VN ++
Sbjct: 300 MAELVAKNLIAFKRGEIPPTLVNREVIKI 328
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 | Back alignment and structure |
|---|
Score = 334 bits (858), Expect = e-111
Identities = 77/307 (25%), Positives = 133/307 (43%), Gaps = 17/307 (5%)
Query: 76 VDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFES-SAGRLKVVGRAGVGIDNVDLSA 134
++ E D + T VFE A +K + VG DN+D++A
Sbjct: 27 LEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTA 86
Query: 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN-KYVGVSLVGK 193
++G + N P + A AE + + RN+ + A ++AG +++ ++G L +
Sbjct: 87 MKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQ 146
Query: 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLH 253
T+ VMG G +G + KG G VIA+DPY + VS E+ +D I LH
Sbjct: 147 TVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP--MKGDHPDFDYVSLEDLFKQSDVIDLH 204
Query: 254 MPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP 313
+P + + N+ AF MK G ++N AR ++D +A++ L SG ++ +D + E
Sbjct: 205 VPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264
Query: 314 P-------------AKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELA 360
+L+ NV ++PH+ T A + + ++ L
Sbjct: 265 EDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGET 324
Query: 361 ATAVNAP 367
+T V P
Sbjct: 325 STEVTGP 331
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333 | Back alignment and structure |
|---|
Score = 331 bits (850), Expect = e-109
Identities = 85/304 (27%), Positives = 137/304 (45%), Gaps = 15/304 (4%)
Query: 76 VDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFES-SAGRLKVVGRAGVGIDNVDLSA 134
V+ + L E D ++V E ++ + + + VG+DN+D++
Sbjct: 29 VEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAK 88
Query: 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKT 194
A E G + N P + A AEH + R D V + +G + +
Sbjct: 89 AKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQV 148
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHM 254
+ V+G G +G + +G G VI +D + + G + S ++ AD ISLH+
Sbjct: 149 VGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE-LEKKGYYVDSLDDLYKQADVISLHV 207
Query: 255 PLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP 314
P PA M NDE+ KMK+ V IVNV+RG +VD +A++R LDSG I A+DV+ E
Sbjct: 208 PDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG 267
Query: 315 -------------AKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA 361
A+ + L+ NV VTP TT A + ++ + + ++G+ A
Sbjct: 268 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAE 327
Query: 362 TAVN 365
T V
Sbjct: 328 TPVK 331
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 | Back alignment and structure |
|---|
Score = 321 bits (824), Expect = e-106
Identities = 68/320 (21%), Positives = 125/320 (39%), Gaps = 21/320 (6%)
Query: 64 EAGLDVLKNFANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTREVFES-SAGRLKV 119
+ D L+ +E + DA+I+R ++ + +K
Sbjct: 13 LPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKY 72
Query: 120 VGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGK 179
+ G D++D A E G + P + A AE + + R+ A +
Sbjct: 73 ILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKN 132
Query: 180 WQRNKY-VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV 238
++ + + + T+ V+G G++G A+ G+G VI D + + V
Sbjct: 133 FKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFE--IKGIEDYCTQV 190
Query: 239 SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298
S +E + +D I++H P + + KMK G +VN ARG +VD EA++ A++S
Sbjct: 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES 250
Query: 299 GIISQAALDVFTEEP--------------PAKDSKLVLHENVTVTPHLGASTTEAQEGVA 344
G + DV E P + + L+ V +TPHLG+ T EA + +
Sbjct: 251 GKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMV 310
Query: 345 IEIAEAVIGALKGELAATAV 364
+ + + +
Sbjct: 311 EVSYQNLKDLAETGDCPNKI 330
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 | Back alignment and structure |
|---|
Score = 315 bits (810), Expect = e-104
Identities = 91/320 (28%), Positives = 153/320 (47%), Gaps = 9/320 (2%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREV 109
K +L+ L EA + + +V + ++ +E+ DAL++ K +EV
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
+ +K + +G D++DL A G V NAP T+A AE + LL AR
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAG 120
Query: 170 QADASVKAGKWQR---NKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY-- 224
+ + ++ W + VG L KTL + GFG +G +A+RA+G M++ D +
Sbjct: 121 EGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 180
Query: 225 AQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284
+ +D A S + +S + F SL+ P TP T FN + +G +VN ARG
Sbjct: 181 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 285 GVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVA 344
+VD E +V AL++G ++ A DVF EP + N + PH+G++ T+A+E +A
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNI-NEGYYDLPNTFLFPHIGSAATQAREDMA 299
Query: 345 IEIAEAVIGALKGELAATAV 364
+ + + G + A+
Sbjct: 300 HQANDLIDALFGGADMSYAL 319
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311 | Back alignment and structure |
|---|
Score = 314 bits (806), Expect = e-103
Identities = 108/315 (34%), Positives = 154/315 (48%), Gaps = 13/315 (4%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREVFES 112
VLV L LD L+ + L EL ++ LI ++ EV +
Sbjct: 3 VLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDR 62
Query: 113 SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQAD 172
A LKV+ VG+D+VDL AA E G V + P T A A+ +ALL A+AR + +
Sbjct: 63 -AKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 173 ASVKAGKWQRNK---YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR 229
A + G W+ +G+ L G TL ++G G++G VA+RA GM V+ H
Sbjct: 122 AYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR-----T 176
Query: 230 ARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289
+ +S EE + AD +SLH PLTP T ++ N E F MK+G ++N ARG +VD
Sbjct: 177 PKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDT 236
Query: 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAE 349
EALV AL G + A LDV EP L N +TPH+G++ +E +A E
Sbjct: 237 EALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE 295
Query: 350 AVIGALKGELAATAV 364
++ L+G V
Sbjct: 296 NLLAVLEGREPPNPV 310
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303 | Back alignment and structure |
|---|
Score = 312 bits (801), Expect = e-102
Identities = 68/313 (21%), Positives = 113/313 (36%), Gaps = 22/313 (7%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAG 115
+ V +L + L+ + + + +A +V +++T E
Sbjct: 3 LYVNFELPPEAEEELRKYFKI---------VRGGDLGNVEAALV---SRITAEELAK-MP 49
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
RLK + G+D++ + H V +N A AE +ALL A + I Q +
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPPHV-TVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKM 108
Query: 176 KAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGV 235
K G + R + G+ +AV+G G++GT V + LG V
Sbjct: 109 KRGDYGR-DVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT----PKEGPWR 163
Query: 236 GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRA 295
S EEA+ A +PL T + + M + VNV R V+D + ++R
Sbjct: 164 FTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRI 223
Query: 296 LDSGIISQAALDVFT-EEPPAKDSKLVLHENVTVTPHLGAST--TEAQEGVAIEIAEAVI 352
L A DV+ AKD++ NV TP + + +E +I
Sbjct: 224 LKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLI 283
Query: 353 GALKGELAATAVN 365
G
Sbjct: 284 TYATGGRPRNIAK 296
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330 | Back alignment and structure |
|---|
Score = 304 bits (782), Expect = 2e-99
Identities = 87/324 (26%), Positives = 149/324 (45%), Gaps = 9/324 (2%)
Query: 51 TSKPTVLVAEKLGEAGLDVLKNFANVDCSYN-----LSPEELCTKISLCDALIVRSGTKV 105
V V ++ G L A+ + + +EL ++ L+ V
Sbjct: 6 VRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHV 65
Query: 106 TREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMA 165
+ + +++ LKV+ VGID++ L + G V P T AE ++LL
Sbjct: 66 DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 166 RNIAQADASVKAGKWQRNK---YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA-H 221
R + +A VK G W K G L T+ ++G G++G +ARR K G+
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 222 DPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281
+ + A VS E + +DFI + LTPAT + N + F KMK+ +N+
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 282 ARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQE 341
+RG VV+++ L +AL SG I+ A LDV + EP + L+ +N + PH+G++T +
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 342 GVAIEIAEAVIGALKGELAATAVN 365
+++ A ++ L+GE + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSELK 329
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345 | Back alignment and structure |
|---|
Score = 286 bits (734), Expect = 4e-92
Identities = 71/320 (22%), Positives = 149/320 (46%), Gaps = 7/320 (2%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTRE 108
+ + A L+ +++ + L+P + ++ + L V + +T E
Sbjct: 27 PIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAE 86
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNI 168
V LK + VG D++D++AA G V++ P + A AE + L+ R
Sbjct: 87 VIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRG 146
Query: 169 AQADASVKAGKWQRNK---YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225
+AD V++G W +G+ L G+ L + G G++G +A RA+G G+ + H+
Sbjct: 147 YEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTR 206
Query: 226 QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285
+ + + + + +D + P P + + K+ +G ++N++RG
Sbjct: 207 LSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGD 266
Query: 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAI 345
+++++AL+ AL S + A LDVF EP D + +N+ +TPH+G++T E ++ +
Sbjct: 267 LINDDALIEALRSKHLFAAGLDVFANEPAI-DPRYRSLDNIFLTPHIGSATHETRDAMGW 325
Query: 346 EIAEAVIGALKGELAATAVN 365
+ + + + ++ ++
Sbjct: 326 LLIQGIEALNQSDVPDNLIS 345
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
|---|
Score = 284 bits (729), Expect = 1e-91
Identities = 79/311 (25%), Positives = 134/311 (43%), Gaps = 4/311 (1%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAG 115
VL+A+ L L+ D ++ + + + + + +
Sbjct: 4 VLMAQATKPEQLQQLQTTY-PDWTFKDAAAVTAADYDQIEVMYG-NHPLLKTILARP-TN 60
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
+LK V G+D + L A G +V N + A +E +A + ++ R A +
Sbjct: 61 QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120
Query: 176 KAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGV 235
+ + +L G+ L + G G++G +A +A LGM+VI + V
Sbjct: 121 RGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETV 180
Query: 236 GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRA 295
+ +A++TA+FI +PLTP T +F+ E F + K+ ++N+ RG VD AL+ A
Sbjct: 181 AFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240
Query: 296 LDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGAL 355
LD +S AALDV EP D L ++V +TPH+ + V A +
Sbjct: 241 LDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFV 300
Query: 356 K-GELAATAVN 365
K G L V+
Sbjct: 301 KDGTLVRNQVD 311
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 | Back alignment and structure |
|---|
Score = 283 bits (727), Expect = 4e-91
Identities = 84/345 (24%), Positives = 142/345 (41%), Gaps = 26/345 (7%)
Query: 52 SKPTVLVA---EKLGEAGLDVLKNFANVDCSYNLSPEELCT-----KISLCDALIVRSGT 103
+P VL+ + + + V + + + + +A+I +
Sbjct: 2 PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVE 61
Query: 104 KVT------REVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHG 157
T ++ LKV AG G D +DL A E G N+ A A ++
Sbjct: 62 NGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLA 121
Query: 158 IALLTAMARNIAQADASVKAGKWQR-------NKYVGVSLVGKTLAVMGFGKVGTEVARR 210
+ L+ ++ R + ++ + + G + + G L +G G + E+AR+
Sbjct: 122 LYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARK 181
Query: 211 A-KGLGMNVIAHDPY-AQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDE 267
A GLGM ++ +D A A+ +A G V S EE +D +S+ +P T + ++
Sbjct: 182 AVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEA 241
Query: 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVT 327
F MK G RIVN ARG V+ ++AL+ AL SG + A LDV EP +L+ ++VT
Sbjct: 242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV-SKELIEMKHVT 300
Query: 328 VTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA-TAVNAPMVPA 371
+T H+G E + L T P+
Sbjct: 301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKVFAPS 345
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340 | Back alignment and structure |
|---|
Score = 257 bits (660), Expect = 3e-81
Identities = 94/333 (28%), Positives = 149/333 (44%), Gaps = 14/333 (4%)
Query: 39 KTKRFAVLATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSYN-LSPEELCTKISLCDAL 97
+ F + F KP +L+ E + +D L+ +V Y L + A+
Sbjct: 16 ENLYFQSMLEFRNVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAV 75
Query: 98 IVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHG 157
G ++ E E L ++ GVG D VDL+ A V P A+ G
Sbjct: 76 ATGGGAGLSNEWMEK-LPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLG 134
Query: 158 IALLTAMARNIAQADASVKAGKWQRNKY--VGVSLVGKTLAVMGFGKVGTEVARRAKGLG 215
IAL+ A+ R + D V+ G+W + +G S GK + V+G G++G +A RA+ G
Sbjct: 135 IALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFG 194
Query: 216 MNVIAHDPYAQADRARATGVG---LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM 272
M+V + R+ +GV S + +D +++ + + AT + + +
Sbjct: 195 MSVRYWN------RSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQAL 248
Query: 273 KKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHL 332
+VNVARG VVDE+AL+ AL SG I+ A LDVF EP S+ N + PH
Sbjct: 249 GPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQ 307
Query: 333 GASTTEAQEGVAIEIAEAVIGALKGELAATAVN 365
G++T E + + + + GE A VN
Sbjct: 308 GSATVETRMAMGKLVLANLAAHFAGEKAPNTVN 340
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 8e-80
Identities = 84/333 (25%), Positives = 135/333 (40%), Gaps = 8/333 (2%)
Query: 35 PRRRKTKRFAVLATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSYN--LSPEELCTKIS 92
V VL+ + L + + + L +
Sbjct: 5 HHHHHHSSGLVPRGSHMEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAE 64
Query: 93 LCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIA 152
A++ S E+ ++ +L++V VG+D VDL E G V N P T
Sbjct: 65 SIRAVVGNSNAGADAELIDA-LPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDD 123
Query: 153 AAEHGIALLTAMARNIAQADASVKAGKWQRNKY-VGVSLVGKTLAVMGFGKVGTEVARRA 211
A+ I L+ A+ R I + D V+ G W+ + + GK + ++G G++G VA RA
Sbjct: 124 VADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERA 183
Query: 212 KGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFK 271
+ + + + S E S +D + + PLTP T+ + N E
Sbjct: 184 EAFDCPISYFSRSKKPNTNYTY---YGSVVELASNSDILVVACPLTPETTHIINREVIDA 240
Query: 272 MKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPH 331
+ ++N+ RG VDE LV AL G + A LDVF EP KL ENV + PH
Sbjct: 241 LGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPH 299
Query: 332 LGASTTEAQEGVAIEIAEAVIGALKGELAATAV 364
+G+ T E ++ +A + + G+ T V
Sbjct: 300 VGSGTVETRKVMADLVVGNLEAHFSGKPLLTPV 332
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 2e-58
Identities = 70/308 (22%), Positives = 122/308 (39%), Gaps = 6/308 (1%)
Query: 51 TSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVF 110
S+ T+L+ + +LK + + + + +A I+ + + +
Sbjct: 3 LSQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLL 62
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
A +L G+D + L A + N +E+ L ++ R +
Sbjct: 63 AK-ANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPL 120
Query: 171 ADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA 230
K WQ + Y L G+TL ++G G +G +A K GM V+ +
Sbjct: 121 YREQQKQRLWQSHPYQ--GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAG 178
Query: 231 RATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEE 290
L + + ++ AD I +P T T +F F K G + NV RG ++E
Sbjct: 179 FDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEG 238
Query: 291 ALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEA 350
L+ AL +G + A LDVF +EP DS L N+ +TPH ++ + + I
Sbjct: 239 DLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHN-SAYSFPDDVAQI-FVRN 296
Query: 351 VIGALKGE 358
I + G+
Sbjct: 297 YIRFIDGQ 304
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 5e-52
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 10/249 (4%)
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAA------AEHGIALLTAMARNIA 169
RLK V G G+D + L + P E+ ++ + R
Sbjct: 59 RLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFD 118
Query: 170 QADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR 229
A W+ + ++ +MG G +G +VA + G + ++
Sbjct: 119 DYQALKNQALWKP--LPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP 176
Query: 230 ARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289
+ VG ++ + +P T T + N E ++ G ++N+ARG V E
Sbjct: 177 GVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQE 236
Query: 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAE 349
L+ ALDSG + A LDVF++EP ++S L H V +TPH+ A+ T E + I+
Sbjct: 237 ADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHI-AAVTRPAEAIDY-ISR 294
Query: 350 AVIGALKGE 358
+ KGE
Sbjct: 295 TITQLEKGE 303
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 2e-16
Identities = 37/259 (14%), Positives = 80/259 (30%), Gaps = 20/259 (7%)
Query: 58 VAEKLGEAGLDV-LKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR 116
+ KL + L F +D + + ++ + T E AG+
Sbjct: 20 IIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNE-----AGK 74
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVV--NAPTANTIAAAEHGIALLTAMARNIAQADAS 174
+ + + ++ T + C+V + T + L+ M R+ S
Sbjct: 75 VDTIFSNESIVLTEEMIEKTPNHCVVYSGISNTYLNQCMKKTNRTLVKLMERDDIAIYNS 134
Query: 175 VKAGKW---QRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD-PYAQADRA 230
+ + ++ ++ G +AV+G G+VG VAR+ LG V R
Sbjct: 135 IPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI 194
Query: 231 RATGVGLVSFE---EAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287
G+ + + D +P + + +M ++++A
Sbjct: 195 AEMGMEPFHISKAAQELRDVDVCINTIP-----ALVVTANVLAEMPSHTFVIDLASKPGG 249
Query: 288 DEEALVRALDSGIISQAAL 306
+ + L
Sbjct: 250 TDFRYAEKRGIKALLVPGL 268
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 1e-09
Identities = 81/619 (13%), Positives = 164/619 (26%), Gaps = 214/619 (34%)
Query: 10 LM--LAASPNKPRLSSTL-----------VPPATIRGPPRRRKTK--RFAVL----ATFI 50
LM + +P + + + R + R A+L A +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 51 T-------SKPTVLVAEKLGEAGLDVLKNFAN----VDCSYNLSPEE-------LCTKIS 92
K T + + V ++ SPE L +I
Sbjct: 154 LIDGVLGSGK-TWVALDVC--LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 93 LCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHG-CLVV--NAPTAN 149
+ + + S L+ L + + CL+V N A
Sbjct: 211 -PNWTSRSDHSSNIKLRIHSIQAELR------------RLLKSKPYENCLLVLLNVQNAK 257
Query: 150 TIAAAEHG--IALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEV 207
A I L T R D + A +SL + M EV
Sbjct: 258 AWNAFNLSCKILLTT---RFKQVTDF-LSAATTTH-----ISLDHHS---MTLTP--DEV 303
Query: 208 ARR-AKGLGMNVIAHD-PYAQADRARATGVGLVSFEEAISTADF-ISL------HMPLTP 258
K L D P E ++T +S+ T
Sbjct: 304 KSLLLKYLDCRP--QDLP-----------------REVLTTNPRRLSIIAESIRDGLATW 344
Query: 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQA--ALDVFTEEPPAK 316
K N + K+ + E+ + L+ + L VF P
Sbjct: 345 DNWKHVNCD---KLTTII-------------ESSLNVLEPAEYRKMFDRLSVF---P--P 383
Query: 317 DSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISE 376
+ I ++ + ++ V+++
Sbjct: 384 SAH---------------------------IPTILLSLIWFDV------IKSDVMVVVNK 410
Query: 377 LAPFVTLAEKLGGLAVQLVAGGSGVKSVKVS----YASARGPDDLDTRLLRAMITK---- 428
L + +L EK K +S Y + + + L R+++
Sbjct: 411 LHKY-SLVEK-------------QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 429 -------GIIEPISSVFVNLVNADFIA-----KQRGLRVTE-ERIVLDGSPENPLEFIQV 475
I + F + I + R+T + LD F++
Sbjct: 457 KTFDSDDLIPPYLDQYFYS-----HIGHHLKNIEHPERMTLFRMVFLD------FRFLEQ 505
Query: 476 QIANVESKF---GSAISDIGDIRV-EGRVKDGKPHLTK----VGSFGVDVSLEGSIILCR 527
+I + + + GS ++ + ++ + + D P + + F +E ++I +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLICSK 563
Query: 528 QVD--QPGIIGKVGSLLGD 544
D + ++ + ++ +
Sbjct: 564 YTDLLRIALMAEDEAIFEE 582
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 7e-07
Identities = 43/251 (17%), Positives = 77/251 (30%), Gaps = 32/251 (12%)
Query: 58 VAEKLGEAGLDVL------KNFANVDCSYNLSPEELCTKISLCDALIV-RSGTKVTREVF 110
+ KL E D+ + E + D++I+ S T V
Sbjct: 22 IIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQ---IDSIILPVSATTGEGVVS 78
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVV-NAPTANTIAAAEHGIALLTAMARN-- 167
+ V + L H + + AA+ L+ R+
Sbjct: 79 TVFSNEEVV-------LKQDHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFERDDI 131
Query: 168 -IAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNV--IAHDPY 224
I + +V+ ++ ++ G +AV+G G+ G +AR LG NV A
Sbjct: 132 AIYNSIPTVEGTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSA 191
Query: 225 --AQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282
A+ +E + D + S + N M I+++A
Sbjct: 192 HLARITEMGLVPFHTDELKEHVKDIDIC-----INTIPSMILNQTVLSSMTPKTLILDLA 246
Query: 283 --RGGVVDEEA 291
GG + A
Sbjct: 247 SRPGGTDFKYA 257
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
+ GK + V G+G+VG K +G V DP A +A G LV E I
Sbjct: 216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPIC-ALQACMDGFRLVKLNEVIR 274
Query: 246 TADFI 250
D +
Sbjct: 275 QVDIV 279
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GKT V G+G VG A +G G V+ DP A +A G ++ E+ +
Sbjct: 207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPIN-ALQAAMEGYQVLLVEDVVE 265
Query: 246 TADFI 250
A
Sbjct: 266 EAHIF 270
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 192 GKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLVSFEEAISTADF 249
KT+A++G GK+G + R+ ++ A + + DR + G+ L + I AD
Sbjct: 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADV 70
Query: 250 ISLHMP 255
+ L +P
Sbjct: 71 VVLALP 76
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GK V G+G VG A+ G G V DP A +A G +V+ ++A S
Sbjct: 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPIC-ALQAAMDGFEVVTLDDAAS 301
Query: 246 TAD-FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281
TAD ++ T + + KMK + N+
Sbjct: 302 TADIVVT-----TTGNKDVITIDHMRKMKDMCIVGNI 333
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLVSFEEAIST 246
SL G T+ V G G VG +A A G ++ D + A A G V+ E+ +ST
Sbjct: 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST 230
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 5e-04
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 182 RNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFE 241
+ + SL G ++V G G V + ++ G ++ D A A G
Sbjct: 163 KEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG----A 218
Query: 242 EAISTADFISL 252
+A++ +
Sbjct: 219 DAVAPNAIYGV 229
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 8e-04
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
K G+ L G + V G G+VG VA A+ LGM V+A
Sbjct: 210 KRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA 246
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
+ +G+ + G +A+ GFG VG AR G V+A
Sbjct: 227 EKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA 263
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 595 | |||
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 100.0 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 100.0 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 100.0 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 100.0 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 100.0 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 100.0 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 100.0 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 100.0 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 100.0 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 100.0 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 100.0 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 100.0 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 100.0 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 100.0 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 100.0 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 100.0 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 100.0 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 100.0 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 100.0 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 100.0 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 100.0 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 100.0 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 100.0 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 100.0 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 100.0 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 100.0 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 100.0 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 100.0 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 100.0 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 100.0 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 100.0 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 100.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 100.0 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 100.0 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 100.0 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.95 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 99.93 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.93 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 99.9 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 99.78 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 99.78 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 99.77 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 99.74 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 99.72 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 99.68 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.67 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 99.66 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 99.61 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.6 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.53 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.38 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.3 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.28 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.24 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.24 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.24 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 99.22 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.21 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.21 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.21 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.2 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 99.2 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.18 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.17 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.16 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.15 | |
| 2iaf_A | 151 | Hypothetical protein SDHL; MCSG, PSI2, MAD, struct | 99.14 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 99.14 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 99.13 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.13 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 99.12 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.11 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.11 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.07 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.99 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.95 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 98.93 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 98.93 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 98.93 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.93 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.9 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 98.89 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 98.89 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 98.89 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 98.89 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.41 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.87 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.87 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 98.84 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.83 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.83 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.77 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.76 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.76 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 98.7 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.69 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.69 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 98.69 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.69 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.65 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 98.63 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 98.62 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.61 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.57 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.56 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 98.49 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 98.49 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 98.47 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.46 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 98.44 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.44 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.41 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.39 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.37 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.36 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.35 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 98.3 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.29 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.29 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.28 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 98.28 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 98.26 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.26 | |
| 1y7p_A | 223 | Hypothetical protein AF1403; structural genomics, | 98.23 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.23 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 98.21 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 98.2 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.2 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.17 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.15 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 98.15 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 98.13 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 98.13 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.11 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.11 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 98.04 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.04 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.03 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 98.03 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 98.02 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.01 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.0 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.99 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.97 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.96 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.95 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.94 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.94 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.94 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.93 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.93 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 97.91 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.9 | |
| 2ko1_A | 88 | CTR148A, GTP pyrophosphokinase; homodimer, alpha+b | 97.89 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.87 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.86 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.86 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.85 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.85 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.84 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.81 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.77 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.75 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.73 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.69 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.69 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.65 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.61 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.56 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.53 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.51 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.5 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.5 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.47 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.45 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 97.42 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 97.41 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 97.41 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.4 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.38 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.37 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.36 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.3 | |
| 2f1f_A | 164 | Acetolactate synthase isozyme III small subunit; f | 97.29 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.28 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.26 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.25 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.24 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 97.23 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.22 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.21 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.17 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 97.16 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.16 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.15 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.14 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.12 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.12 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.11 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.11 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.09 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.09 | |
| 2pc6_A | 165 | Probable acetolactate synthase isozyme III (small; | 97.06 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.02 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.0 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.99 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.98 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.98 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.97 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 96.95 | |
| 1zpv_A | 91 | ACT domain protein; structural genomics, PSI, prot | 96.93 | |
| 1pg5_A | 299 | Aspartate carbamoyltransferase; 2.60A {Sulfolobus | 96.93 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.92 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.91 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.9 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 96.87 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.85 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.76 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.76 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.74 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 96.74 | |
| 2fgc_A | 193 | Acetolactate synthase, small subunit; regulatory s | 96.74 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 96.74 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 96.72 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.72 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.71 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.7 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 96.68 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.67 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.67 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 96.67 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 96.66 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 96.66 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 96.65 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 96.64 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 96.64 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.63 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.59 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.57 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.54 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.53 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 96.53 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 96.51 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.5 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 96.49 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 96.49 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.49 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 96.48 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.42 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.42 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 96.34 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.33 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.28 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 96.27 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 96.23 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.22 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 96.21 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 96.21 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 96.2 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 96.19 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.19 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.18 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 96.18 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 96.15 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.15 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 96.14 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.12 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.11 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 96.09 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.09 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 96.08 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 96.03 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 96.02 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.01 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 96.0 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.0 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 95.98 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 95.98 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 95.96 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 95.92 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 95.92 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 95.92 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.91 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 95.88 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 95.85 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 95.81 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 95.81 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 95.81 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 95.79 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 95.79 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 95.79 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.77 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.77 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 95.76 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 95.73 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 95.69 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.69 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 95.68 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 95.68 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.67 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 95.66 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.61 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 95.61 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.61 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 95.57 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.57 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.57 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 95.56 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.54 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 95.53 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 95.52 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 95.5 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 95.49 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 95.48 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.48 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 95.48 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.47 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 95.45 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 95.44 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 95.44 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.43 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 95.43 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 95.42 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.42 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.42 | |
| 1js1_X | 324 | Transcarbamylase; alpha/beta topology, two domains | 95.34 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 95.34 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 95.33 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 95.32 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 95.32 | |
| 4ekn_B | 306 | Aspartate carbamoyltransferase; atcase, aspartate | 95.3 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 95.3 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 95.29 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 95.27 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 95.23 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.23 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.22 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 95.2 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.19 | |
| 3lou_A | 292 | Formyltetrahydrofolate deformylase; structural gen | 95.19 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.17 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 95.16 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.12 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.09 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 95.07 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.02 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.02 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.01 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 95.0 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.99 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 94.96 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 94.95 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 94.95 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 94.93 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 94.92 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 94.89 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 94.89 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 94.87 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 94.84 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.82 | |
| 3obi_A | 288 | Formyltetrahydrofolate deformylase; structural gen | 94.82 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.81 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.79 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 94.78 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 94.77 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 94.76 | |
| 3n0v_A | 286 | Formyltetrahydrofolate deformylase; formyl transfe | 94.75 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 94.75 | |
| 1zq6_A | 359 | Otcase, ornithine carbamoyltransferase; alpha/beta | 94.71 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.71 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.7 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 94.67 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.67 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 94.66 | |
| 4h31_A | 358 | Otcase, ornithine carbamoyltransferase; structural | 94.65 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 94.63 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 94.62 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.61 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 94.59 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 94.57 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 94.54 | |
| 2we8_A | 386 | Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc | 94.52 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 94.51 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.51 | |
| 3o1l_A | 302 | Formyltetrahydrofolate deformylase; structural gen | 94.48 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.47 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.46 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 94.43 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.4 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 94.37 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.36 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 94.35 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 94.34 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 94.33 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.3 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 94.29 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 94.28 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 94.28 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 94.26 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 94.26 | |
| 3r3j_A | 456 | Glutamate dehydrogenase; rossman fold, oxidoreduct | 94.24 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 94.23 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.2 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.18 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 94.18 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.17 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 94.15 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 94.12 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 94.07 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 94.04 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 94.04 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.04 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 93.97 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.95 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 93.85 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 93.83 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.81 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 93.79 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 93.73 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 93.69 | |
| 3nrb_A | 287 | Formyltetrahydrofolate deformylase; N-terminal ACT | 93.66 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 93.64 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.59 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 93.58 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 93.52 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 93.5 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.48 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.46 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.45 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.44 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 93.43 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 93.43 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.4 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 93.38 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 93.34 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.3 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.26 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 93.1 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 93.08 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 93.08 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.06 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 93.02 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 93.0 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 92.99 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.99 | |
| 3on5_A | 362 | BH1974 protein; structural genomics, joint center | 92.98 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 92.98 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 92.94 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 92.94 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.91 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 92.87 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 92.81 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.79 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 92.75 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 92.75 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.72 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.65 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 92.64 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 92.63 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 92.63 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 92.59 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 92.58 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.57 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 92.56 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 92.49 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 92.46 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 92.43 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 92.42 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 92.36 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 92.34 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 92.32 | |
| 2jhe_A | 190 | Transcription regulator TYRR; aromatic hydrocarbon | 92.29 | |
| 3kzn_A | 359 | Aotcase, N-acetylornithine carbamoyltransferase; t | 92.27 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 92.27 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 92.2 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 92.15 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 92.13 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 92.09 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 92.06 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 92.0 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 91.93 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 91.93 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 91.88 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 91.82 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 91.79 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 91.77 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 91.72 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 91.71 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 91.69 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.68 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 91.62 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.51 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.47 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 91.42 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 91.26 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 91.26 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 91.25 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 91.18 |
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-100 Score=852.05 Aligned_cols=525 Identities=37% Similarity=0.540 Sum_probs=489.7
Q ss_pred CCCCeEEEecCCChhHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccccc
Q 046427 51 TSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNV 130 (595)
Q Consensus 51 ~~~~~il~~~~~~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~i 130 (595)
++++|||+++.+.+...+.|++..++.+....+++++.+.++++|++++++.+++++++++++ |+||||+++|+|||||
T Consensus 2 m~~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~i 80 (529)
T 1ygy_A 2 VSLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARAGVGLDNV 80 (529)
T ss_dssp -CCCEEEECSSCCGGGGTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEESSSCCTTB
T ss_pred CCCcEEEEeCCCCHHHHHHHhcCceEEEcCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCcEEEECCcCcCcc
Confidence 456899999999999888888766777766678899999999999999998889999999987 6999999999999999
Q ss_pred ChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHH
Q 046427 131 DLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARR 210 (595)
Q Consensus 131 D~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~ 210 (595)
|+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+|+|+||||+|+||+++|++
T Consensus 81 d~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~ 160 (529)
T 1ygy_A 81 DVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR 160 (529)
T ss_dssp CHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887678899999999999999999999999
Q ss_pred HhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHH
Q 046427 211 AKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEE 290 (595)
Q Consensus 211 l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~ 290 (595)
+++|||+|++||++.+.+.+.+.|+..+++++++++||+|++|+|++++|+++++++.++.||+|++|||++||+++|++
T Consensus 161 l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~ 240 (529)
T 1ygy_A 161 IAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEA 240 (529)
T ss_dssp HHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred HHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHH
Confidence 99999999999998866667778888779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCC
Q 046427 291 ALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVP 370 (595)
Q Consensus 291 aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~ 370 (595)
+|+++|++|+++||++|||+.||+ +++|||+++|+++|||++++|.|++++++..+++++.+|+.|..+.+.||.+.
T Consensus 241 aL~~al~~g~i~ga~lDv~~~eP~-~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~~~~v~~~~-- 317 (529)
T 1ygy_A 241 ALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGG-- 317 (529)
T ss_dssp HHHHHHHTSSEEEEEESSCSSSSC-SCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSCCS--
T ss_pred HHHHHHHcCCccEEEEeeccCCCC-CCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcccCCcc--
Confidence 999999999999999999999996 68999999999999999999999999999999999999999999999998764
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhh
Q 046427 371 AEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQ 450 (595)
Q Consensus 371 ~~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e 450 (595)
++..+.+.||+.||+++|+++.||+++ +|++++++|+|+++ + .+++++++++++|+|+.+.++.+|++||+.+|++
T Consensus 318 ~~~hd~i~P~l~La~~lg~~~~qla~g--~~~ditria~G~~~-~-~~i~~~n~a~l~g~L~~~~~~~~~~vnA~~iA~e 393 (529)
T 1ygy_A 318 GVVNEEVAPWLDLVRKLGVLAGVLSDE--LPVSLSVQVRGELA-A-EEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAE 393 (529)
T ss_dssp TTSCTTTTTHHHHHHHHHHHHHHTSSS--CCSEEEEEEEEGGG-G-SCCHHHHHHHHHHHTGGGSCTTCCCCCHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHhCC--CceEEEEEEEeecc-c-cCCcHHHHHHHHHhcCCCCCCCccccCHHHHHHH
Confidence 556677889999999999999999999 89999999999998 6 6799999999999999998877999999999999
Q ss_pred CCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEEEEe-C-CeeEEEEEcceEEEeecCccEEEEEe
Q 046427 451 RGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVK-D-GKPHLTKVGSFGVDVSLEGSIILCRQ 528 (595)
Q Consensus 451 ~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSvg-G-G~i~I~~Idgf~v~~~~~~~~Liv~~ 528 (595)
+||+++|.+.+....|||+..+...+ +++++++|.|+++ | |+++|++||||++++.|++|+|++.|
T Consensus 394 ~Gi~i~~~~~~~~~~~~n~v~v~~~~------------~~~~~~~v~Gt~~gg~g~~~i~~i~g~~v~~~~~~~~l~v~~ 461 (529)
T 1ygy_A 394 RGVTAEICKASESPNHRSVVDVRAVG------------ADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHY 461 (529)
T ss_dssp HSCEEEEEEESCCSSSSEEEEEEEEC------------TTSCEEEEEEEEETTTTEEEEEEETTEEEEEESCSEEEEEEE
T ss_pred cCCEEEEEEccCCCCCCCEEEEEEEE------------CCCCEEEEEEEEeCCCCcEEEEEECCEEEEecCCccEEEEEc
Confidence 99999998877666788876654432 1677899999554 5 69999999999999999999999999
Q ss_pred cCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEEeC
Q 046427 529 VDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595 (595)
Q Consensus 529 ~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i~~ 595 (595)
+|+||+|++|+++|++++|||++|+++|.+++++|+|+|++|++++++++++|+++++|.++++++|
T Consensus 462 ~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~~~~~~l~~l~~~~~i~~v~~v~~ 528 (529)
T 1ygy_A 462 VDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDL 528 (529)
T ss_dssp SCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEEEC
T ss_pred CCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCCCCHHHHHHHhcCCCccEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-78 Score=652.26 Aligned_cols=391 Identities=29% Similarity=0.424 Sum_probs=347.4
Q ss_pred CCCeEEEecCCChhHHHHhhcC-C-cEEecC-CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNF-A-NVDCSY-NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGID 128 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~-~-~v~~~~-~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d 128 (595)
+++|||+++.+.+...+.|++. . ++.+.. ..+++++.+.++++|++++++.+++++++++++ |+||+|+++|+|+|
T Consensus 3 ~~~kil~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d 81 (404)
T 1sc6_A 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAFAIGTN 81 (404)
T ss_dssp SSCCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEECSSCCT
T ss_pred CceEEEEeCCCCHHHHHHHHhCCCcEEEEcCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCcEEEECCcccC
Confidence 3568999999999999999775 3 676543 568899999999999999999889999999987 69999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHH
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVA 208 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA 208 (595)
|||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.+.+|+|||+||||+|+||+.+|
T Consensus 82 ~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~IG~~vA 161 (404)
T 1sc6_A 82 QVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 161 (404)
T ss_dssp TBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHH
T ss_pred ccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998766678899999999999999999999
Q ss_pred HHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchh
Q 046427 209 RRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287 (595)
Q Consensus 209 ~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v 287 (595)
+++++|||+|++||++.... ..++..+ ++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++
T Consensus 162 ~~l~~~G~~V~~~d~~~~~~---~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~v 238 (404)
T 1sc6_A 162 ILAESLGMYVYFYDIENKLP---LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVV 238 (404)
T ss_dssp HHHHHTTCEEEEECSSCCCC---CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSB
T ss_pred HHHHHCCCEEEEEcCCchhc---cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHH
Confidence 99999999999999975321 1134444 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCeeEEEEecCCCCCCCC----CcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 046427 288 DEEALVRALDSGIISQAALDVFTEEPPAK----DSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATA 363 (595)
Q Consensus 288 d~~aL~~aL~~g~i~ga~lDv~~~EP~~~----~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~ 363 (595)
|+++|+++|++|+++||+||||+.||++. ++|||++|||++|||+|++|.|++++++..+++|+.+|++|+.+.+.
T Consensus 239 d~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~~~~~ 318 (404)
T 1sc6_A 239 DIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSA 318 (404)
T ss_dssp CHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCCTTB
T ss_pred hHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCcce
Confidence 99999999999999999999999999864 57999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChhhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhccccccccccccc
Q 046427 364 VNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVN 443 (595)
Q Consensus 364 vn~~~~~~~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~n 443 (595)
||.|.++ - +
T Consensus 319 vn~p~~~--------------------------~--~------------------------------------------- 327 (404)
T 1sc6_A 319 VNFPEVS--------------------------L--P------------------------------------------- 327 (404)
T ss_dssp SSSCCCC--------------------------C--C-------------------------------------------
T ss_pred ecccccc--------------------------c--C-------------------------------------------
Confidence 9988755 0 0
Q ss_pred HHHHHhhCCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEEEEeCCeeEEEEEcceEEEeecCccE
Q 046427 444 ADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSI 523 (595)
Q Consensus 444 A~~iA~e~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSvgGG~i~I~~Idgf~v~~~~~~~~ 523 (595)
.+ | .+.
T Consensus 328 ---------------------~~-~----------------------------------------------------~~r 333 (404)
T 1sc6_A 328 ---------------------LH-G----------------------------------------------------GRR 333 (404)
T ss_dssp ---------------------CC-S----------------------------------------------------SEE
T ss_pred ---------------------cC-C----------------------------------------------------cce
Confidence 00 0 133
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceEEEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v~~i 593 (595)
|++.|+|+||+|++|+++|++++|||+.|+++| +|+.|++++++|++ ++++++++|++++++.+++++
T Consensus 334 l~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 334 LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 788999999999999999999999999999998 78899999999999 999999999999999999876
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-72 Score=604.47 Aligned_cols=396 Identities=32% Similarity=0.469 Sum_probs=348.7
Q ss_pred cCCCCCCeEEEecCCChhHHHHhhcCC--cEEec-CCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcc
Q 046427 48 TFITSKPTVLVAEKLGEAGLDVLKNFA--NVDCS-YNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAG 124 (595)
Q Consensus 48 ~~~~~~~~il~~~~~~~~~~~~l~~~~--~v~~~-~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g 124 (595)
+...+++|||+++.+++...+.|++.+ ++.+. ...+++++.+.++++|++++++.+++++++++++ |+||+|+++|
T Consensus 10 ~~~~~~~kIl~~~~i~~~~~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~-p~Lk~I~~~~ 88 (416)
T 3k5p_A 10 SLSRDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAA-NRLIAVGCFS 88 (416)
T ss_dssp --CGGGSCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHC-TTCCEEEECS
T ss_pred CCCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhC-CCcEEEEECc
Confidence 445557899999999999999998753 66653 3468999999999999999999889999999997 6999999999
Q ss_pred ccccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHH
Q 046427 125 VGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVG 204 (595)
Q Consensus 125 ~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG 204 (595)
+|+||||+++|+++||.|+|+|++|+++||||++++||+++|+++.+++.+++|+|.+..+.+.+++|||+||||+|+||
T Consensus 89 ~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGlG~IG 168 (416)
T 3k5p_A 89 VGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIG 168 (416)
T ss_dssp SCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHHH
T ss_pred cccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEeeCHHH
Confidence 99999999999999999999999999999999999999999999999999999999987667899999999999999999
Q ss_pred HHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccC
Q 046427 205 TEVARRAKGLGMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 205 ~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
+.+|+++++|||+|++||++.... ..+.. ..++++++++||+|++|+|++++|+++|+++.|++||+|++|||+||
T Consensus 169 ~~vA~~l~~~G~~V~~yd~~~~~~---~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aR 245 (416)
T 3k5p_A 169 SQVGNLAESLGMTVRYYDTSDKLQ---YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNAR 245 (416)
T ss_dssp HHHHHHHHHTTCEEEEECTTCCCC---BTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSC
T ss_pred HHHHHHHHHCCCEEEEECCcchhc---ccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCC
Confidence 999999999999999999875321 11232 34899999999999999999999999999999999999999999999
Q ss_pred CchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCC----cccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 046427 284 GGVVDEEALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGEL 359 (595)
Q Consensus 284 g~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~----~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~ 359 (595)
|+++|++||+++|++|+++||+||||+.||++.+ +|||++|||++|||+|++|.|++++++..+++|+.+|++++.
T Consensus 246 G~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l~~g~ 325 (416)
T 3k5p_A 246 GSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGS 325 (416)
T ss_dssp TTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999998765 799999999999999999999999999999999999999888
Q ss_pred CCccccCCCCChhhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhccccccccc
Q 046427 360 AATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFV 439 (595)
Q Consensus 360 ~~~~vn~~~~~~~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~v 439 (595)
+.+.||.|.++ | +
T Consensus 326 ~~~~Vn~p~~~------------------------------------------------------------~-~------ 338 (416)
T 3k5p_A 326 TVGAVNFPQVQ------------------------------------------------------------L-P------ 338 (416)
T ss_dssp CTTBSSSCCCC------------------------------------------------------------C-C------
T ss_pred CCceeeCCCcC------------------------------------------------------------C-C------
Confidence 88888864210 0 0
Q ss_pred ccccHHHHHhhCCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEEEEeCCeeEEEEEcceEEEeec
Q 046427 440 NLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSL 519 (595)
Q Consensus 440 n~~nA~~iA~e~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSvgGG~i~I~~Idgf~v~~~~ 519 (595)
. |++.
T Consensus 339 -------------------~------~~~~-------------------------------------------------- 343 (416)
T 3k5p_A 339 -------------------P------RPTG-------------------------------------------------- 343 (416)
T ss_dssp -------------------C------CSSS--------------------------------------------------
T ss_pred -------------------C------CCCc--------------------------------------------------
Confidence 0 1111
Q ss_pred CccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC--CCCcHHHHHHHhcCCCcceEEEE
Q 046427 520 EGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD--EEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 520 ~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d--~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
+-+.+.|+++||++++|.++|+++||||.+|.. ..+|+.|..++.+| ++.+++++++|++++++.+++++
T Consensus 344 --~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~--~~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 344 --TRFMHVHENRPGILNSLMNVFSHHHINIASQFL--QTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp --EEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEE--EECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred --eEEEEEecCCccHHHHHHHHHHHcCCCHHHHhc--cCCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 234577899999999999999999999999987 35678899999999 88889999999999999999986
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-69 Score=568.39 Aligned_cols=314 Identities=23% Similarity=0.437 Sum_probs=290.4
Q ss_pred CCCCCCeEEEecCCChhHHHHhhcCCcEEec---CCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccc
Q 046427 49 FITSKPTVLVAEKLGEAGLDVLKNFANVDCS---YNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGV 125 (595)
Q Consensus 49 ~~~~~~~il~~~~~~~~~~~~l~~~~~v~~~---~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~ 125 (595)
+.+++||||+++.++++.++.|++.+++.+. ...+++++.+.++++|++++++.++++++++++++|+||||+++|+
T Consensus 24 ~~~~~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~~ 103 (345)
T 4g2n_A 24 STHPIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSV 103 (345)
T ss_dssp ---CCCEEEESSCCCHHHHHHHHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEESSS
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEcCC
Confidence 3456899999999999999999987787763 2457899999999999999987789999999987569999999999
Q ss_pred cccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc---ccceeeecCCEEEEEeCCh
Q 046427 126 GIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN---KYVGVSLVGKTLAVMGFGK 202 (595)
Q Consensus 126 G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~ 202 (595)
||||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+|+|+|.+. .+.|.+|+||||||||+|+
T Consensus 104 G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~ 183 (345)
T 4g2n_A 104 GYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGR 183 (345)
T ss_dssp CCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSH
T ss_pred cccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeCh
Confidence 9999999999999999999999999999999999999999999999999999999853 2468999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEe
Q 046427 203 VGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 203 IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
||+.+|+++++|||+|++||++. ..+.+ .|+.++ ++++++++||+|++|+|++++|+++|+++.|+.||+|++|||
T Consensus 184 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN 261 (345)
T 4g2n_A 184 IGRAIATRARGFGLAIHYHNRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVIN 261 (345)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEE
T ss_pred hHHHHHHHHHHCCCEEEEECCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEE
Confidence 99999999999999999999986 33322 277776 899999999999999999999999999999999999999999
Q ss_pred ccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 046427 281 VARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELA 360 (595)
Q Consensus 281 ~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~ 360 (595)
+|||+++|++||+++|++|+|+||+||||++|| +.++|||++|||++|||+|++|.|++.+++..+++||.+|++|+.+
T Consensus 262 ~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP-~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~~ 340 (345)
T 4g2n_A 262 ISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVP 340 (345)
T ss_dssp CSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCchhCHHHHHHHHHhCCceEEEecCCCCCC-CCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999 6899999999999999999999999999999999999999999998
Q ss_pred Ccccc
Q 046427 361 ATAVN 365 (595)
Q Consensus 361 ~~~vn 365 (595)
.+.|+
T Consensus 341 ~~~V~ 345 (345)
T 4g2n_A 341 DNLIS 345 (345)
T ss_dssp TTBCC
T ss_pred CCCcC
Confidence 88764
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-68 Score=558.91 Aligned_cols=315 Identities=29% Similarity=0.465 Sum_probs=297.4
Q ss_pred CCCeEEEecCCChhHHHHhhcCCcEEecC---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGID 128 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d 128 (595)
|++|||+++.+.++.++.|++.+++.+.. ..+++|+.+.++++|++++++.+++++++++++ |+||||++.|+|||
T Consensus 1 m~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~-~~Lk~I~~~~~G~d 79 (330)
T 4e5n_A 1 MLPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQAC-PELRVIGCALKGFD 79 (330)
T ss_dssp CCCEEEECSCCCHHHHHHHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHC-TTCCEEEESSSCCT
T ss_pred CCCEEEEecCCCHHHHHHHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhC-CCCcEEEECCCccc
Confidence 57899999999999999999888877632 357899999999999999987789999999998 69999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc--ccceeeecCCEEEEEeCChHHHH
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN--KYVGVSLVGKTLAVMGFGKVGTE 206 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktvGIIGlG~IG~~ 206 (595)
|||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|..+ ...|.+|+||||||||+|+||+.
T Consensus 80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~ 159 (330)
T 4e5n_A 80 NFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLA 159 (330)
T ss_dssp TBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHH
T ss_pred ccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999743 34688999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 207 VARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 207 vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
+|+++++|||+|++||++. ..+.+.+.|+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+
T Consensus 160 vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~ 239 (330)
T 4e5n_A 160 MADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239 (330)
T ss_dssp HHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGG
T ss_pred HHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCc
Confidence 9999999999999999987 556666778887899999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhcCCeeEEEEecCCCC-------CCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 046427 286 VVDEEALVRALDSGIISQAALDVFTEE-------PPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGE 358 (595)
Q Consensus 286 ~vd~~aL~~aL~~g~i~ga~lDv~~~E-------P~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~ 358 (595)
++|+++|+++|++|+|+||+||||++| |++.++|||++||+++|||+|++|.|++.+++..+++|+.+|++|+
T Consensus 240 ~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~ 319 (330)
T 4e5n_A 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGE 319 (330)
T ss_dssp GBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999 9889999999999999999999999999999999999999999999
Q ss_pred CCCccccCC
Q 046427 359 LAATAVNAP 367 (595)
Q Consensus 359 ~~~~~vn~~ 367 (595)
.+.+.||.|
T Consensus 320 ~~~~~vn~~ 328 (330)
T 4e5n_A 320 RPINAVNRL 328 (330)
T ss_dssp CCTTBSSCC
T ss_pred CCCCccCCC
Confidence 999999976
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-67 Score=553.63 Aligned_cols=311 Identities=29% Similarity=0.426 Sum_probs=255.4
Q ss_pred CCCCCCeEEEecCCChhHHHHhhcCCcEEecC-CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccc
Q 046427 49 FITSKPTVLVAEKLGEAGLDVLKNFANVDCSY-NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGI 127 (595)
Q Consensus 49 ~~~~~~~il~~~~~~~~~~~~l~~~~~v~~~~-~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~ 127 (595)
+.+++|+||+++++.++.++.|++.+++...+ ..+++++.+.++++|++++++.+++++++++++ |+||||+++|+||
T Consensus 26 ~~~~~~~vl~~~~~~~~~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~ 104 (340)
T 4dgs_A 26 FRNVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWMEKL-PSLGIIAINGVGT 104 (340)
T ss_dssp -------CEECSCCCHHHHHTHHHHSCCEETTCGGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHC-SSCCEEEEESSCC
T ss_pred cCCCCCEEEEECCCCHHHHHHHhcCCcEEEeCCCCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhC-CCCEEEEECCCCc
Confidence 44678999999999999999998877776543 246778888889999999988889999999998 6999999999999
Q ss_pred cccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc-c-cceeeecCCEEEEEeCChHHH
Q 046427 128 DNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN-K-YVGVSLVGKTLAVMGFGKVGT 205 (595)
Q Consensus 128 d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~-~-~~g~~l~gktvGIIGlG~IG~ 205 (595)
||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+|+|+|.+. . ..|.+|+||||||||+|+||+
T Consensus 105 d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~ 184 (340)
T 4dgs_A 105 DKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGR 184 (340)
T ss_dssp TTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHH
T ss_pred cccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999875 2 257899999999999999999
Q ss_pred HHHHHHhcCCCEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCC
Q 046427 206 EVARRAKGLGMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 206 ~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
.+|+++++|||+|++||++... ..++. ..++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||
T Consensus 185 ~vA~~l~~~G~~V~~~dr~~~~----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG 260 (340)
T 4dgs_A 185 ALASRAEAFGMSVRYWNRSTLS----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260 (340)
T ss_dssp HHHHHHHTTTCEEEEECSSCCT----TSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC
T ss_pred HHHHHHHHCCCEEEEEcCCccc----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence 9999999999999999997643 23343 348999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 046427 285 GVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAV 364 (595)
Q Consensus 285 ~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~v 364 (595)
+++|+++|+++|++|+|+||+||||++||++. +|||++|||++|||+|++|.|++.+++..+++||.+|++|+++.+.|
T Consensus 261 ~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~-~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~V 339 (340)
T 4dgs_A 261 NVVDEDALIEALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAPNTV 339 (340)
T ss_dssp --------------CCSSEEEESCCSSSSSCC-SHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCCTTBC
T ss_pred cccCHHHHHHHHHcCCceEEEeCCcCCCCCCc-cchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 99999999999999999999999999999864 69999999999999999999999999999999999999999999988
Q ss_pred c
Q 046427 365 N 365 (595)
Q Consensus 365 n 365 (595)
|
T Consensus 340 n 340 (340)
T 4dgs_A 340 N 340 (340)
T ss_dssp -
T ss_pred C
Confidence 7
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-67 Score=549.31 Aligned_cols=274 Identities=31% Similarity=0.477 Sum_probs=256.5
Q ss_pred hcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchH
Q 046427 90 KISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169 (595)
Q Consensus 90 ~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~ 169 (595)
.++++|++++++.+++++++|+++ |+||+|+++|+|+||||+++|+++||.|+|+||+++.+||||+++++|+++|++.
T Consensus 39 ~l~~ad~i~v~~~~~i~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~ 117 (334)
T 3kb6_A 39 ELKKAELISVFVYDKLTEELLSKM-PRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLK 117 (334)
T ss_dssp HHHHCSEEEECTTSCBCHHHHHTC-TTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HhcCCCEEEEeCCCCCCHHHHhcC-CCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccc
Confidence 456899999998899999999998 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccc-ccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccC
Q 046427 170 QADASVKAGKWQRN-KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTAD 248 (595)
Q Consensus 170 ~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD 248 (595)
.+++.++.|.|.+. ...+.+|+|||+||||+|+||+.+|+++++|||+|++||++.... ..+.++.++++++++++||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~-~~~~~~~~~~l~ell~~sD 196 (334)
T 3kb6_A 118 RIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED-LKEKGCVYTSLDELLKESD 196 (334)
T ss_dssp HHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHTTCEECCHHHHHHHCS
T ss_pred cccccccccccccccccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchh-hhhcCceecCHHHHHhhCC
Confidence 99999999998764 356889999999999999999999999999999999999986543 4566788889999999999
Q ss_pred EEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCc----------
Q 046427 249 FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDS---------- 318 (595)
Q Consensus 249 ~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~---------- 318 (595)
+|++|||+|++|++||+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.++
T Consensus 197 ivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~ 276 (334)
T 3kb6_A 197 VISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDK 276 (334)
T ss_dssp EEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHH
T ss_pred EEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred -----ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 046427 319 -----KLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVN 365 (595)
Q Consensus 319 -----~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 365 (595)
|||.+|||++|||+||+|.|++.+++..+++||.+|++|+.+...+|
T Consensus 277 ~~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n 328 (334)
T 3kb6_A 277 NLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGN 328 (334)
T ss_dssp HHHHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGG
T ss_pred cccchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCC
Confidence 68899999999999999999999999999999999999987654444
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-65 Score=538.93 Aligned_cols=317 Identities=30% Similarity=0.469 Sum_probs=287.1
Q ss_pred CeEEEecCCChh-----HHHHhhcCCcEEecCC--CCHhHHhhhcCCceEEEE-cCCCCCCHHHHhccCCCceEEEEccc
Q 046427 54 PTVLVAEKLGEA-----GLDVLKNFANVDCSYN--LSPEELCTKISLCDALIV-RSGTKVTREVFESSAGRLKVVGRAGV 125 (595)
Q Consensus 54 ~~il~~~~~~~~-----~~~~l~~~~~v~~~~~--~~~~el~~~i~~~d~li~-~~~~~i~~~~l~~~~~~Lk~I~~~g~ 125 (595)
+||++++.+... .++.|++ .++.+... .+++++.+.++++|++++ ++.+++++++++++ |+||+|++.|+
T Consensus 3 mki~~~d~~~~~~~~~~~~~~l~~-~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~-~~Lk~I~~~g~ 80 (352)
T 3gg9_A 3 LKIAVLDDYQDAVRKLDCFSLLQD-HEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRL-PKLKIISQTGR 80 (352)
T ss_dssp CEEEECCCTTCCGGGSGGGGGGTT-SEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTC-TTCCEEEESSC
T ss_pred eEEEEEcCccccchhhhhhhhhcC-ceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhC-CCCeEEEEeCc
Confidence 789999887643 2344543 56665433 367899999999999998 66789999999998 69999999999
Q ss_pred cc----cccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc----------cceeeec
Q 046427 126 GI----DNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK----------YVGVSLV 191 (595)
Q Consensus 126 G~----d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~----------~~g~~l~ 191 (595)
|+ ||||+++|+++||.|+|+||+ +.+||||++++||+++|+++.+++.+++|+|.+.. ..|.+|+
T Consensus 81 G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~ 159 (352)
T 3gg9_A 81 VSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLK 159 (352)
T ss_dssp CCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCT
T ss_pred ccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCC
Confidence 99 999999999999999999999 99999999999999999999999999999998642 3578999
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHh
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
||||||||+|.||+.+|+++++|||+|++||++...+.+.+.|++.+ ++++++++||+|++|+|++++|+++++++.|+
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~ 239 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLT 239 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHh
Confidence 99999999999999999999999999999999865555667888877 89999999999999999999999999999999
Q ss_pred cCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHH
Q 046427 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEA 350 (595)
Q Consensus 271 ~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~ 350 (595)
.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||++.++|||++||+++|||+|++|.|+++++...+++|
T Consensus 240 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~n 319 (352)
T 3gg9_A 240 RMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQN 319 (352)
T ss_dssp TSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccccCCCCChhhh
Q 046427 351 VIGALKGELAATAVNAPMVPAEVI 374 (595)
Q Consensus 351 l~~~l~g~~~~~~vn~~~~~~~~~ 374 (595)
|.+|++|.+ .+.||...+.+.+.
T Consensus 320 i~~~~~G~p-~~~Vn~~~~~~~~~ 342 (352)
T 3gg9_A 320 ILDILQGNV-DSVANPTALAPALI 342 (352)
T ss_dssp HHHHHTTCC-TTBSCGGGSSCTTT
T ss_pred HHHHHcCCC-CcccCHHHHHHHHH
Confidence 999999965 68898766555443
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-64 Score=530.36 Aligned_cols=309 Identities=47% Similarity=0.731 Sum_probs=282.2
Q ss_pred CCCeEEEecCCChhHHHHhhcC-CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNF-ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNV 130 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~i 130 (595)
+++|||+++.+.+...+.|++. .++......+++++.+.++++|++++++.+++++++++++ |+||||++.|+|||||
T Consensus 25 ~~~~vli~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~i 103 (335)
T 2g76_A 25 NLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDNV 103 (335)
T ss_dssp -CCEEEECSCCCHHHHHHHHHHTCEEEECCSCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-SSCCEEEESSSSCTTB
T ss_pred cceEEEEcCCCCHHHHHHHHhCCCEEEECCCCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhC-CCCcEEEECCCCcchh
Confidence 3568999999999888888765 3565555567889999999999999987778999999987 6999999999999999
Q ss_pred ChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHH
Q 046427 131 DLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARR 210 (595)
Q Consensus 131 D~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~ 210 (595)
|+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+..+.+.++.|+||||||+|+||+.+|++
T Consensus 104 d~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~IG~~vA~~ 183 (335)
T 2g76_A 104 DLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATR 183 (335)
T ss_dssp CHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSHHHHHHHHH
T ss_pred ChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999865567889999999999999999999999
Q ss_pred HhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHH
Q 046427 211 AKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEE 290 (595)
Q Consensus 211 l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~ 290 (595)
+++|||+|++||++.....+.+.|+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++
T Consensus 184 l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~ 263 (335)
T 2g76_A 184 MQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEG 263 (335)
T ss_dssp HHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred HHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHH
Confidence 99999999999998765556677887779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 046427 291 ALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAAT 362 (595)
Q Consensus 291 aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~ 362 (595)
+|+++|++|+++||+||||+.|| ++++|||++||+++|||++++|.|++.+++..+++|+.+|++|+++.|
T Consensus 264 aL~~aL~~g~i~gA~lDV~~~EP-~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~n 334 (335)
T 2g76_A 264 ALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTG 334 (335)
T ss_dssp HHHHHHHHTSEEEEEESCCSSSS-CSCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHhCCccEEEEeecCCCC-CCCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999 478999999999999999999999999999999999999999987654
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-65 Score=537.92 Aligned_cols=311 Identities=21% Similarity=0.300 Sum_probs=276.5
Q ss_pred CCCeEEEecCC--------ChhHHHHhhcCCcEEecCCCCHhHHhh-hcCCceEEEEcCCCCCCHHHHhccCCCceEEEE
Q 046427 52 SKPTVLVAEKL--------GEAGLDVLKNFANVDCSYNLSPEELCT-KISLCDALIVRSGTKVTREVFESSAGRLKVVGR 122 (595)
Q Consensus 52 ~~~~il~~~~~--------~~~~~~~l~~~~~v~~~~~~~~~el~~-~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~ 122 (595)
+..++++.+.. .++.++.|++.+++......+.+|+.+ .+.++|+++. .+++++++++++ |+||+|++
T Consensus 26 ~~r~ivll~~~~~~~~~~~~~~~~~~L~~~~~v~~~~~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~-p~Lk~I~~ 102 (365)
T 4hy3_A 26 TERPLAISAPEPRSLDLIFSDEARAALHSKYEIVEADPENIAGLGDDILGRARYIIG--QPPLSAETLARM-PALRSILN 102 (365)
T ss_dssp --CCEEEEECTTSCHHHHCCHHHHHHHHHHSEEEECCGGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTC-TTCCEEEC
T ss_pred CCCCEEEEcCCcccccccCCHHHHHHHhCCcEEEECCCCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhC-CCCeEEEE
Confidence 34456666655 556788898877876544445566554 3467888774 368999999998 69999997
Q ss_pred c-cccccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCc--cccc-ccceeeecCCEEEEE
Q 046427 123 A-GVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGK--WQRN-KYVGVSLVGKTLAVM 198 (595)
Q Consensus 123 ~-g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~--W~~~-~~~g~~l~gktvGII 198 (595)
. |+||||||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+|+|+ |.+. .+.+.+|+|||||||
T Consensus 103 ~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGII 182 (365)
T 4hy3_A 103 VESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIV 182 (365)
T ss_dssp CSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEE
T ss_pred ecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEe
Confidence 5 89999999999999999999999999999999999999999999999999999999 5432 246889999999999
Q ss_pred eCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEE
Q 046427 199 GFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRI 278 (595)
Q Consensus 199 GlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gail 278 (595)
|+|+||+.+|+++++|||+|++||++...+.+.+.|+...++++++++||+|++|+|++++|+++|+++.|+.||+|++|
T Consensus 183 GlG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gail 262 (365)
T 4hy3_A 183 GFGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAF 262 (365)
T ss_dssp CCSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEE
T ss_pred cCCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEE
Confidence 99999999999999999999999998766666778888889999999999999999999999999999999999999999
Q ss_pred EeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 046427 279 VNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGE 358 (595)
Q Consensus 279 iN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~ 358 (595)
||+|||+++|++||+++|++|+|+ |+||||++||++.++|||++|||++|||+|++|.|++.+++..+++||.+|++|+
T Consensus 263 IN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~ 341 (365)
T 4hy3_A 263 ILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGL 341 (365)
T ss_dssp EECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccC
Q 046427 359 LAATAVNA 366 (595)
Q Consensus 359 ~~~~~vn~ 366 (595)
++.+++|.
T Consensus 342 ~~~~~vn~ 349 (365)
T 4hy3_A 342 PPMRCKRA 349 (365)
T ss_dssp CCCSSEEC
T ss_pred Cccccccc
Confidence 99999996
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-64 Score=534.42 Aligned_cols=314 Identities=30% Similarity=0.409 Sum_probs=284.7
Q ss_pred CCCeEEEecCCChhHHHHhhcCC-cEEecCC--CCHhHHhhhcCCceEEEEcCC--CCCCHHHHhccCCCceEEEEcccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFA-NVDCSYN--LSPEELCTKISLCDALIVRSG--TKVTREVFESSAGRLKVVGRAGVG 126 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~-~v~~~~~--~~~~el~~~i~~~d~li~~~~--~~i~~~~l~~~~~~Lk~I~~~g~G 126 (595)
.+|++|-++.......++|++.+ ++.+... .+.+++.+.++++|++|+++. .++++++++++ |+||+|+++|+|
T Consensus 18 ~~~~~lg~~~~~l~~~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~-p~Lk~i~~~g~G 96 (351)
T 3jtm_A 18 KNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKA-KNLKLLLTAGIG 96 (351)
T ss_dssp HCTTCCSSTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHC-SSCCEEEESSSC
T ss_pred cCCCEEEeccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhC-CCCeEEEEeCee
Confidence 46777777776667778888764 6665332 356789999999999998753 46999999998 699999999999
Q ss_pred ccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc--cceeeecCCEEEEEeCChHH
Q 046427 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK--YVGVSLVGKTLAVMGFGKVG 204 (595)
Q Consensus 127 ~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG 204 (595)
+||||+++|+++||.|+|+||+|+.+||||++++||+++|++..+++.+++|.|.+.. ..+.+|+||||||||+|+||
T Consensus 97 ~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG 176 (351)
T 3jtm_A 97 SDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIG 176 (351)
T ss_dssp CTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHH
T ss_pred ecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHH
Confidence 9999999999999999999999999999999999999999999999999999998642 24789999999999999999
Q ss_pred HHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 205 TEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 205 ~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+.+|+++++|||+|++||++. +.+.+.+.|+..+ ++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|
T Consensus 177 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 256 (351)
T 3jtm_A 177 KLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA 256 (351)
T ss_dssp HHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECS
T ss_pred HHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECc
Confidence 999999999999999999886 5566677888776 89999999999999999999999999999999999999999999
Q ss_pred CCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC--C
Q 046427 283 RGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGEL--A 360 (595)
Q Consensus 283 rg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~--~ 360 (595)
||+++|+++|+++|++|+|+||+||||++||++.++|||++||+++|||+|++|.|++.+++..+++|+.+|++|+. +
T Consensus 257 RG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~~~~ 336 (351)
T 3jtm_A 257 RGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPT 336 (351)
T ss_dssp CGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCCCCG
T ss_pred CchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999995 5
Q ss_pred CccccC
Q 046427 361 ATAVNA 366 (595)
Q Consensus 361 ~~~vn~ 366 (595)
.|.++.
T Consensus 337 ~~~i~~ 342 (351)
T 3jtm_A 337 ENYIVK 342 (351)
T ss_dssp GGEEEE
T ss_pred ceEEec
Confidence 555543
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-65 Score=532.90 Aligned_cols=310 Identities=22% Similarity=0.278 Sum_probs=278.3
Q ss_pred CCCeEEEecCCChhHHHHh-hcC-CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVL-KNF-ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDN 129 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l-~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~ 129 (595)
+++|||+++++.+...+.| ++. .++++....+.+++.+.++++|+++++ .++++++++++ |+||||++.|+||||
T Consensus 4 ~~mkili~~~~~~~~~~~L~~~~~p~~~~~~~~~~~~~~~~~~~ad~li~~--~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 80 (324)
T 3hg7_A 4 SQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAE--PARAKPLLAKA-NKLSWFQSTYAGVDV 80 (324)
T ss_dssp CCEEEEEESTTHHHHHHHHHHSCCTTEEEEECSSHHHHHHHGGGCSEEEEC--HHHHGGGGGGC-TTCCEEEESSSCCGG
T ss_pred cccEEEEecCCCHHHHHHHhhccCCCeEEEeCCChhHHHHHhCCCEEEEEC--CCCCHHHHhhC-CCceEEEECCCCCCc
Confidence 4578999999999999999 554 477766555778888999999999974 35677889887 699999999999999
Q ss_pred cChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHH
Q 046427 130 VDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVAR 209 (595)
Q Consensus 130 iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~ 209 (595)
||++++++ ||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|.+. .+.+|+||||||||+|+||+++|+
T Consensus 81 id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~--~~~~l~g~tvGIIGlG~IG~~vA~ 157 (324)
T 3hg7_A 81 LLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH--PYQGLKGRTLLILGTGSIGQHIAH 157 (324)
T ss_dssp GSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC--CCCCSTTCEEEEECCSHHHHHHHH
T ss_pred cChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC--CCcccccceEEEEEECHHHHHHHH
Confidence 99998865 999999999999999999999999999999999999999999863 577999999999999999999999
Q ss_pred HHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcH
Q 046427 210 RAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289 (595)
Q Consensus 210 ~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~ 289 (595)
++++|||+|++||++..............++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+
T Consensus 158 ~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde 237 (324)
T 3hg7_A 158 TGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINE 237 (324)
T ss_dssp HHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCH
T ss_pred HHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCH
Confidence 99999999999998763221111223346899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCC
Q 046427 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMV 369 (595)
Q Consensus 290 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~ 369 (595)
++|+++|++|+++||+||||++||++.++|||++|||++|||+|++|.+ .+++..+++|+.+|++|+++.+.||.+..
T Consensus 238 ~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~~G~~~~~~V~~~~~ 315 (324)
T 3hg7_A 238 GDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQPLDGKIDFDKG 315 (324)
T ss_dssp HHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHHTTCCCTTBCCCC--
T ss_pred HHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHHcCCCCcceEChhhh
Confidence 9999999999999999999999999999999999999999999999987 46889999999999999999999997643
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=533.35 Aligned_cols=312 Identities=22% Similarity=0.316 Sum_probs=272.1
Q ss_pred CeEEEecCCC--hhHHHHh-hcC-CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHH-HHhccC-CCceEEEEccccc
Q 046427 54 PTVLVAEKLG--EAGLDVL-KNF-ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTRE-VFESSA-GRLKVVGRAGVGI 127 (595)
Q Consensus 54 ~~il~~~~~~--~~~~~~l-~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~-~l~~~~-~~Lk~I~~~g~G~ 127 (595)
+||++.+... ...++.+ ++. .++.+......+|+.+.++++|++++++.++++++ ++++++ ++||+|++.|+||
T Consensus 2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~ 81 (343)
T 2yq5_A 2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVGF 81 (343)
T ss_dssp CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSSCC
T ss_pred ceEEEEecCcccHHHHHHHHHhCCeEEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECceee
Confidence 6788877322 2233333 232 35655443334678889999999999888899999 999874 3799999999999
Q ss_pred cccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHH-cCcccc-cccceeeecCCEEEEEeCChHHH
Q 046427 128 DNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVK-AGKWQR-NKYVGVSLVGKTLAVMGFGKVGT 205 (595)
Q Consensus 128 d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~-~g~W~~-~~~~g~~l~gktvGIIGlG~IG~ 205 (595)
||||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.++ +|.|.. ....+.+|+||||||||+|+||+
T Consensus 82 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~IG~ 161 (343)
T 2yq5_A 82 NTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHIGS 161 (343)
T ss_dssp TTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHHHH
T ss_pred cccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHHHH
Confidence 9999999999999999999999999999999999999999999999999 998754 34678899999999999999999
Q ss_pred HHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 206 EVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 206 ~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
.+|+++++|||+|++||++.... .+.++.++++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+
T Consensus 162 ~vA~~l~~~G~~V~~~d~~~~~~--~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~ 239 (343)
T 2yq5_A 162 AVAEIFSAMGAKVIAYDVAYNPE--FEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGE 239 (343)
T ss_dssp HHHHHHHHTTCEEEEECSSCCGG--GTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGG
T ss_pred HHHHHHhhCCCEEEEECCChhhh--hhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCCh
Confidence 99999999999999999987532 2334666799999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhcCCeeEEEEecCCCCC--CCCC-----------cccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 046427 286 VVDEEALVRALDSGIISQAALDVFTEEP--PAKD-----------SKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVI 352 (595)
Q Consensus 286 ~vd~~aL~~aL~~g~i~ga~lDv~~~EP--~~~~-----------~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~ 352 (595)
++|+++|+++|++|+|+||+||||++|| ++.+ +|||++|||++|||+|++|.|++.+++..+++|+.
T Consensus 240 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni~ 319 (343)
T 2yq5_A 240 LVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQL 319 (343)
T ss_dssp GBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 4555 48999999999999999999999999999999999
Q ss_pred HHHcCCCCCccccCC
Q 046427 353 GALKGELAATAVNAP 367 (595)
Q Consensus 353 ~~l~g~~~~~~vn~~ 367 (595)
+|++|+.+.+.||..
T Consensus 320 ~~l~g~~~~~~v~~~ 334 (343)
T 2yq5_A 320 TIAKGGRPRSIVNLT 334 (343)
T ss_dssp HHHTTCCCTTBC---
T ss_pred HHHcCCCCCceECCc
Confidence 999999999999853
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-63 Score=518.57 Aligned_cols=305 Identities=43% Similarity=0.678 Sum_probs=282.8
Q ss_pred CCCeEEEecCCChhHHHHhhcC-CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNF-ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNV 130 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~i 130 (595)
+++||++++.+.+...+.|++. .++......+++++.+.++++|++++++.+++++++++++ |+||||++.|+|||||
T Consensus 2 ~~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~i 80 (307)
T 1wwk_A 2 KRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESA-PKLKVIARAGVGLDNI 80 (307)
T ss_dssp --CEEEECSCCCHHHHHHHHHTTCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTC-TTCCEEEESSSCCTTB
T ss_pred CceEEEEeCCCCHHHHHHHHhCCeEEEeCCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCeEEEECCcccccc
Confidence 4679999999988888888774 3554444457889999999999999987667999999987 6999999999999999
Q ss_pred ChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHH
Q 046427 131 DLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARR 210 (595)
Q Consensus 131 D~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~ 210 (595)
|+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.+..+.+.++.|+||||||+|+||+.+|++
T Consensus 81 d~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~ 160 (307)
T 1wwk_A 81 DVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKI 160 (307)
T ss_dssp CHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999864456889999999999999999999999
Q ss_pred HhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHH
Q 046427 211 AKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEE 290 (595)
Q Consensus 211 l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~ 290 (595)
+++|||+|++||++...+.+.+.|+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+++|++
T Consensus 161 l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~ 240 (307)
T 1wwk_A 161 ANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240 (307)
T ss_dssp HHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHH
T ss_pred HHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHH
Confidence 99999999999998865556677887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 046427 291 ALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKG 357 (595)
Q Consensus 291 aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g 357 (595)
+|+++|++|+++||++|||+.||+++++|||++||+++|||++++|.|++.++...+++|+.+|++|
T Consensus 241 aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g 307 (307)
T 1wwk_A 241 ALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG 307 (307)
T ss_dssp HHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999998899999999999999999999999999999999999999976
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-65 Score=532.66 Aligned_cols=310 Identities=25% Similarity=0.354 Sum_probs=271.2
Q ss_pred CCeEEEecCCChhHHHHhhcCC-cEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHH-hccCCCceEEEEcccccccc
Q 046427 53 KPTVLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVF-ESSAGRLKVVGRAGVGIDNV 130 (595)
Q Consensus 53 ~~~il~~~~~~~~~~~~l~~~~-~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l-~~~~~~Lk~I~~~g~G~d~i 130 (595)
|+|||++++++++..+.|++.+ ++++.... +...+.+.++|+++++. .++ ++++ +++ |+||||++.|+|||||
T Consensus 1 m~kil~~~~~~~~~~~~L~~~~~~~~~~~~~--~~~~~~~~~ad~l~~~~-~~~-~~~l~~~~-~~Lk~I~~~~~G~d~i 75 (324)
T 3evt_A 1 MSLVLMAQATKPEQLQQLQTTYPDWTFKDAA--AVTAADYDQIEVMYGNH-PLL-KTILARPT-NQLKFVQVISAGVDYL 75 (324)
T ss_dssp -CEEEECSCCCHHHHHHHHHHCTTCEEEETT--SCCTTTGGGEEEEESCC-THH-HHHHHSTT-CCCCEEECSSSCCTTS
T ss_pred CcEEEEecCCCHHHHHHHHhhCCCeEEecCC--ccChHHhCCcEEEEECC-cCh-HHHHHhhC-CCceEEEECCcccccc
Confidence 3689999999999999998753 43332111 11223567899887644 457 8999 565 6999999999999999
Q ss_pred ChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHH-HHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHH
Q 046427 131 DLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA-DASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVAR 209 (595)
Q Consensus 131 D~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~-~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~ 209 (595)
|+++|+++||.|+|+||+++.+||||++++||+++|+++.+ ++.+++|+|.+.. .+.+|+||||||||+|+||+.+|+
T Consensus 76 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~-~~~~l~gktvGIiGlG~IG~~vA~ 154 (324)
T 3evt_A 76 PLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM-TTSTLTGQQLLIYGTGQIGQSLAA 154 (324)
T ss_dssp CHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS-CCCCSTTCEEEEECCSHHHHHHHH
T ss_pred CHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC-CCccccCCeEEEECcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999998753 588999999999999999999999
Q ss_pred HHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcH
Q 046427 210 RAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289 (595)
Q Consensus 210 ~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~ 289 (595)
++++|||+|++||++..........+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+
T Consensus 155 ~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~ 234 (324)
T 3evt_A 155 KASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT 234 (324)
T ss_dssp HHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCH
T ss_pred HHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhH
Confidence 99999999999998763221111123345899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC-CCCccccCCC
Q 046427 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGE-LAATAVNAPM 368 (595)
Q Consensus 290 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~-~~~~~vn~~~ 368 (595)
++|+++|++|+++||+||||++||++.++|||++|||++|||+|++|.|++.+++..+++|+.+|++|+ ++.|.||.+.
T Consensus 235 ~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~~~n~V~~~~ 314 (324)
T 3evt_A 235 TALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQVDLNR 314 (324)
T ss_dssp HHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCCCSCBCC---
T ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCCCCceECccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999765 5789998653
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-62 Score=515.86 Aligned_cols=310 Identities=28% Similarity=0.376 Sum_probs=275.2
Q ss_pred CeEEEecC--CChhHHHHhhcCC---cEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCC--ceEEEEcccc
Q 046427 54 PTVLVAEK--LGEAGLDVLKNFA---NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR--LKVVGRAGVG 126 (595)
Q Consensus 54 ~~il~~~~--~~~~~~~~l~~~~---~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~--Lk~I~~~g~G 126 (595)
+||++... ..+..++.|++.. ++.+......+++.+.++++|++++++.+++++++++++ |+ ||||++.|+|
T Consensus 2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G 80 (333)
T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQAL-ADNGITKMSLRNVG 80 (333)
T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHH-HHTTCCEEEESSSC
T ss_pred cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCCCcHHHHHHhcCCcEEEEcCCCCCCHHHHHhc-cccCCeEEEECCcc
Confidence 47887543 3344566666432 454433333457888899999999987678999999987 46 9999999999
Q ss_pred ccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHH
Q 046427 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTE 206 (595)
Q Consensus 127 ~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~ 206 (595)
|||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.+....+.++.|+||||||+|+||+.
T Consensus 81 ~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~ 160 (333)
T 1j4a_A 81 VDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQV 160 (333)
T ss_dssp CTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHH
T ss_pred cccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999975455788999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 207 VARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 207 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
+|+++++|||+|++||++.... +.+ .+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+
T Consensus 161 ~A~~l~~~G~~V~~~d~~~~~~-~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~ 238 (333)
T 1j4a_A 161 FMQIMEGFGAKVITYDIFRNPE-LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGP 238 (333)
T ss_dssp HHHHHHHTTCEEEEECSSCCHH-HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGG
T ss_pred HHHHHHHCCCEEEEECCCcchh-HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCc
Confidence 9999999999999999987544 333 35666 89999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhcCCeeEEEEecCCCCC--CCCCc-----------ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 046427 286 VVDEEALVRALDSGIISQAALDVFTEEP--PAKDS-----------KLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVI 352 (595)
Q Consensus 286 ~vd~~aL~~aL~~g~i~ga~lDv~~~EP--~~~~~-----------~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~ 352 (595)
++|+++|+++|++|+|+||+||||++|| ++.++ |||++|||++|||+|++|.|++.+++..+++|+.
T Consensus 239 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~ 318 (333)
T 1j4a_A 239 LVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNL 318 (333)
T ss_dssp GBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 34443 6999999999999999999999999999999999
Q ss_pred HHHcCCCCCccccC
Q 046427 353 GALKGELAATAVNA 366 (595)
Q Consensus 353 ~~l~g~~~~~~vn~ 366 (595)
+|++|+.+.+.||.
T Consensus 319 ~~~~g~~~~~~v~~ 332 (333)
T 1j4a_A 319 ELVEGKEAETPVKV 332 (333)
T ss_dssp HHHTTCCCSSBCCC
T ss_pred HHHcCCCCCccccC
Confidence 99999998888873
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-61 Score=505.80 Aligned_cols=305 Identities=30% Similarity=0.471 Sum_probs=282.1
Q ss_pred CeEEEecCCChhHHHHhhcCCcEEecC---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCC-ceEEEEccccccc
Q 046427 54 PTVLVAEKLGEAGLDVLKNFANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR-LKVVGRAGVGIDN 129 (595)
Q Consensus 54 ~~il~~~~~~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~-Lk~I~~~g~G~d~ 129 (595)
++|++++.+.+...+.|++..++.+.. ..+++++.+.++++|++++++.+++++++++++ |+ ||||++.|+||||
T Consensus 2 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~Lk~I~~~~~G~d~ 80 (320)
T 1gdh_A 2 KKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRI-PENIKCISTYSIGFDH 80 (320)
T ss_dssp CEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHS-CTTCCEEEEESSCCTT
T ss_pred cEEEEcCCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhC-CccceEEEECCccccc
Confidence 589999999988899998766665532 257789999999999999987678999999998 58 9999999999999
Q ss_pred cChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc---ccceeeecCCEEEEEeCChHHHH
Q 046427 130 VDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN---KYVGVSLVGKTLAVMGFGKVGTE 206 (595)
Q Consensus 130 iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~IG~~ 206 (595)
||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|... .+.+.++.|+||||||+|+||++
T Consensus 81 id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~ 160 (320)
T 1gdh_A 81 IDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 160 (320)
T ss_dssp BCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHH
T ss_pred ccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999632 24678999999999999999999
Q ss_pred HHHHHhcCCCEEEEECC-CCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCC
Q 046427 207 VARRAKGLGMNVIAHDP-YAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 207 vA~~l~~~G~~V~~~d~-~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
+|+++++|||+|++||+ +.....+.+.|+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||
T Consensus 161 ~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg 240 (320)
T 1gdh_A 161 LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240 (320)
T ss_dssp HHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred HHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCC
Confidence 99999999999999999 876555666788777 8999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 046427 285 GVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA 361 (595)
Q Consensus 285 ~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 361 (595)
+++|+++|.++|++|+++||++|||+.|| +.++|||+++|+++|||++++|.|++.+++..+ +|+.+|++|+++.
T Consensus 241 ~~vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~~ 315 (320)
T 1gdh_A 241 DLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGADM 315 (320)
T ss_dssp GGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSCC
T ss_pred cccCHHHHHHHHHhCCCcEEEEeCCCCCC-CCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCCc
Confidence 99999999999999999999999999999 789999999999999999999999999999999 9999999998653
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-61 Score=505.93 Aligned_cols=303 Identities=36% Similarity=0.521 Sum_probs=281.6
Q ss_pred CeEEEecCCChhHHHHhhcC-CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccCh
Q 046427 54 PTVLVAEKLGEAGLDVLKNF-ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDL 132 (595)
Q Consensus 54 ~~il~~~~~~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~ 132 (595)
+|||+++.+.+...+.|++. .++.+....+++++.+.++++|++++++.+++++++++++ |+||||++.|+|+||||+
T Consensus 6 mkil~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 84 (313)
T 2ekl_A 6 VKALITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKG-KKLKIIARAGIGLDNIDT 84 (313)
T ss_dssp CEEEECSCCCHHHHHHHHHTTCEEEECTTCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-TTCCEEEECSSCCTTBCH
T ss_pred eEEEEECCCCHHHHHHHHhCCcEEEeCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEEcCCCCCccCH
Confidence 58999999988888888875 3554434457889999999999999987778999999998 699999999999999999
Q ss_pred hhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHh
Q 046427 133 SAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAK 212 (595)
Q Consensus 133 ~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~ 212 (595)
++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|. .+.+.++.|+||||||+|+||+.+|++++
T Consensus 85 ~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~--~~~~~~l~g~~vgIIG~G~IG~~~A~~l~ 162 (313)
T 2ekl_A 85 EEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFK--KIEGLELAGKTIGIVGFGRIGTKVGIIAN 162 (313)
T ss_dssp HHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC--CCCCCCCTTCEEEEESCSHHHHHHHHHHH
T ss_pred HHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC--CCCCCCCCCCEEEEEeeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999996 34678999999999999999999999999
Q ss_pred cCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHH
Q 046427 213 GLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEAL 292 (595)
Q Consensus 213 ~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL 292 (595)
+|||+|++||++.....+.+.|+...++++++++||+|++|+|++++|+++++++.++.||+|++|||++||+++|+++|
T Consensus 163 ~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL 242 (313)
T 2ekl_A 163 AMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKAL 242 (313)
T ss_dssp HTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHH
T ss_pred HCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHH
Confidence 99999999999876555667788777999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeeEEEEecCCCCCCCCCc---ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 046427 293 VRALDSGIISQAALDVFTEEPPAKDS---KLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELA 360 (595)
Q Consensus 293 ~~aL~~g~i~ga~lDv~~~EP~~~~~---~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~ 360 (595)
.++|++|+++||+||||+.||++ ++ |||++||+++|||++++|.|++.+++..+++|+.+|++|++.
T Consensus 243 ~~aL~~g~i~ga~lDv~~~eP~~-~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l 312 (313)
T 2ekl_A 243 LDYIKKGKVYAYATDVFWNEPPK-EEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGM 312 (313)
T ss_dssp HHHHHTTCEEEEEESCCSSSSCC-SHHHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCcEEEEecCCCCCCC-CcccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999986 66 999999999999999999999999999999999999998753
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-62 Score=516.15 Aligned_cols=310 Identities=25% Similarity=0.379 Sum_probs=273.8
Q ss_pred eEEEec--CCChhHHHHhhcC--CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCC--ceEEEEcccccc
Q 046427 55 TVLVAE--KLGEAGLDVLKNF--ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR--LKVVGRAGVGID 128 (595)
Q Consensus 55 ~il~~~--~~~~~~~~~l~~~--~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~--Lk~I~~~g~G~d 128 (595)
||++.. ......++.|.+. .++.+......+++.+.++++|++++++.+++++++++++ |+ ||||+++|+|||
T Consensus 2 kil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G~d 80 (333)
T 1dxy_A 2 KIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKM-HAYGIKFLTIRNVGTD 80 (333)
T ss_dssp EEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHH-HHTTCCEEEESSSCCT
T ss_pred EEEEEeccccCHHHHHHHHHhCCeEEEEcCCCChHHHHHHhcCCeEEEEcCCCCCCHHHHHhC-cccCceEEEEcCcccC
Confidence 677754 4445566666432 2455443334467888899999999987778999999987 46 999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccc-cccceeeecCCEEEEEeCChHHHHH
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQR-NKYVGVSLVGKTLAVMGFGKVGTEV 207 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~-~~~~g~~l~gktvGIIGlG~IG~~v 207 (595)
|||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.. ....+.++.|+||||||+|+||+.+
T Consensus 81 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~ 160 (333)
T 1dxy_A 81 NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVA 160 (333)
T ss_dssp TBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHH
T ss_pred ccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999964 3456789999999999999999999
Q ss_pred HHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchh
Q 046427 208 ARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287 (595)
Q Consensus 208 A~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v 287 (595)
|+++++|||+|++||++.... +. ..+.+.++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++
T Consensus 161 A~~l~~~G~~V~~~d~~~~~~-~~-~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v 238 (333)
T 1dxy_A 161 IKLFKGFGAKVIAYDPYPMKG-DH-PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLI 238 (333)
T ss_dssp HHHHHHTTCEEEEECSSCCSS-CC-TTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSB
T ss_pred HHHHHHCCCEEEEECCCcchh-hH-hccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCccc
Confidence 999999999999999976432 11 2245668999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCeeEEEEecCCCCCC--C--------CC---cccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 046427 288 DEEALVRALDSGIISQAALDVFTEEPP--A--------KD---SKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGA 354 (595)
Q Consensus 288 d~~aL~~aL~~g~i~ga~lDv~~~EP~--~--------~~---~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~ 354 (595)
|+++|+++|++|+|+||+||||++||+ + .+ +|||++|||++|||+|++|.|++.+++..+++|+.+|
T Consensus 239 d~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~ 318 (333)
T 1dxy_A 239 DTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDF 318 (333)
T ss_dssp CHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999983 1 12 5899999999999999999999999999999999999
Q ss_pred HcCCCCCccccCC
Q 046427 355 LKGELAATAVNAP 367 (595)
Q Consensus 355 l~g~~~~~~vn~~ 367 (595)
++|+.+.+.||.|
T Consensus 319 ~~g~~~~~~v~~~ 331 (333)
T 1dxy_A 319 LTKGETSTEVTGP 331 (333)
T ss_dssp HHHSCCTTEECC-
T ss_pred HcCCCCCceeCCC
Confidence 9999999999976
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-61 Score=515.95 Aligned_cols=297 Identities=25% Similarity=0.347 Sum_probs=270.4
Q ss_pred HHhhcCC-cEEecCC--CCHhHHhhhcCCceEEEEcC--CCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceE
Q 046427 68 DVLKNFA-NVDCSYN--LSPEELCTKISLCDALIVRS--GTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLV 142 (595)
Q Consensus 68 ~~l~~~~-~v~~~~~--~~~~el~~~i~~~d~li~~~--~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V 142 (595)
+.|++.+ ++.+.+. .+.+++.+.++++|+++++. .+++++++++++ |+||||++.|+|+||||+++|+++||.|
T Consensus 61 ~~l~~~g~~v~~~~~~~~~~~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~iD~~aa~~~gI~V 139 (393)
T 2nac_A 61 KYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRNVTV 139 (393)
T ss_dssp HHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred HHHHhCCCEEEEecCCCCCHHHHHHhccCCCEEEEcCccCCCCCHHHHhhC-CCCcEEEEcCccccccCHHHHhcCCEEE
Confidence 4666654 5654322 34568889999999999864 347999999997 6999999999999999999999999999
Q ss_pred EeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc--cceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE
Q 046427 143 VNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK--YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220 (595)
Q Consensus 143 ~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~ 220 (595)
+|+|++++.+||||++++||+++|++..+++.+++|+|.... ..+.+|+||||||||+|+||+.+|+++++|||+|++
T Consensus 140 ~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~ 219 (393)
T 2nac_A 140 AEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHY 219 (393)
T ss_dssp EECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEE
T ss_pred EeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999997532 246799999999999999999999999999999999
Q ss_pred ECCCC-cHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 221 HDPYA-QADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 221 ~d~~~-~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
||++. ..+.+.+.|+.. .++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++
T Consensus 220 ~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 299 (393)
T 2nac_A 220 TDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES 299 (393)
T ss_dssp ECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred EcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHc
Confidence 99986 445566678776 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 046427 299 GIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVN 365 (595)
Q Consensus 299 g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 365 (595)
|+|+||+||||++||++.++|||++||+++|||+|++|.|++.+++..+++|+.+|++|++..+.++
T Consensus 300 g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~~~ 366 (393)
T 2nac_A 300 GRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYL 366 (393)
T ss_dssp TSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGE
T ss_pred CCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCcceeE
Confidence 9999999999999999899999999999999999999999999999999999999999998888665
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-62 Score=518.96 Aligned_cols=314 Identities=25% Similarity=0.340 Sum_probs=282.1
Q ss_pred CCCCeEEEecCCChhHHHHhhcCC-cEEecCC--CCHhHHhhhcCCceEEEEcCC--CCCCHHHHhccCCCceEEEEccc
Q 046427 51 TSKPTVLVAEKLGEAGLDVLKNFA-NVDCSYN--LSPEELCTKISLCDALIVRSG--TKVTREVFESSAGRLKVVGRAGV 125 (595)
Q Consensus 51 ~~~~~il~~~~~~~~~~~~l~~~~-~v~~~~~--~~~~el~~~i~~~d~li~~~~--~~i~~~~l~~~~~~Lk~I~~~g~ 125 (595)
..+|+||+.+.......+.|++.+ ++.+... .+.+++.+.++++|+++++.. .++++++++++ |+||||++.|+
T Consensus 15 ~~~~~vl~~d~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~ 93 (364)
T 2j6i_A 15 ADEEKLYGCTENKLGIANWLKDQGHELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKA-KKLKLVVVAGV 93 (364)
T ss_dssp HHCTTCTTBTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHC-TTCCEEEESSS
T ss_pred ccCceEEEecCccHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhC-CCCeEEEECCc
Confidence 346788888988777778887653 6654332 246789999999999998643 36999999988 59999999999
Q ss_pred cccccChhhHHhC--CceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc--cceeeecCCEEEEEeCC
Q 046427 126 GIDNVDLSAATEH--GCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK--YVGVSLVGKTLAVMGFG 201 (595)
Q Consensus 126 G~d~iD~~aa~~~--gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG 201 (595)
|+||||+++|+++ ||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.+.. ..+.+|+|+||||||+|
T Consensus 94 G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G 173 (364)
T 2j6i_A 94 GSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAG 173 (364)
T ss_dssp CCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCS
T ss_pred ccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcC
Confidence 9999999999999 9999999999999999999999999999999999999999997532 25789999999999999
Q ss_pred hHHHHHHHHHhcCCCE-EEEECCCC-cHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEE
Q 046427 202 KVGTEVARRAKGLGMN-VIAHDPYA-QADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRI 278 (595)
Q Consensus 202 ~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gail 278 (595)
+||+.+|+++++|||+ |++||++. ..+.+.+.|+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++|
T Consensus 174 ~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~l 253 (364)
T 2j6i_A 174 RIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWL 253 (364)
T ss_dssp HHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEE
Confidence 9999999999999997 99999876 4555667787665 8999999999999999999999999999999999999999
Q ss_pred EeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccC--C---cEEEcCCCCCCcHHHHHHHHHHHHHHHHH
Q 046427 279 VNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLH--E---NVTVTPHLGASTTEAQEGVAIEIAEAVIG 353 (595)
Q Consensus 279 iN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~--~---nvilTPHi~~~t~ea~~~~~~~~~~~l~~ 353 (595)
||+|||+++|+++|+++|++|+|+||+||||++||++.++|||.+ | ||++|||+|++|.|++.+++..+++|+.+
T Consensus 254 In~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~ 333 (364)
T 2j6i_A 254 VNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILES 333 (364)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHHH
T ss_pred EECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9 99999999999999999999999999999
Q ss_pred HHcCCC---CCcccc
Q 046427 354 ALKGEL---AATAVN 365 (595)
Q Consensus 354 ~l~g~~---~~~~vn 365 (595)
|++|+. +.|.|+
T Consensus 334 ~~~g~~~~~~~n~v~ 348 (364)
T 2j6i_A 334 FFTGKFDYRPQDIIL 348 (364)
T ss_dssp HHTTCCCCCGGGEEE
T ss_pred HHcCCCCCCCCceec
Confidence 999984 444444
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-61 Score=502.88 Aligned_cols=304 Identities=36% Similarity=0.531 Sum_probs=279.3
Q ss_pred CeEEEecCCChhHHHHhhcC-CcEEecC--CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccccc
Q 046427 54 PTVLVAEKLGEAGLDVLKNF-ANVDCSY--NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNV 130 (595)
Q Consensus 54 ~~il~~~~~~~~~~~~l~~~-~~v~~~~--~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~i 130 (595)
||||+++.+.+...+.|++. .++.+.. ..+.+++.+.++++|++++++.+++++++++++ |+||||++.|+|||||
T Consensus 1 ~~vl~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~i 79 (311)
T 2cuk_A 1 MRVLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRA-KGLKVIACYSVGVDHV 79 (311)
T ss_dssp CEEEESSCCSSSTTHHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHS-TTCCEEECSSSCCTTB
T ss_pred CEEEEeCCCCHHHHHHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEECCcCcccc
Confidence 57899998888888888876 5766532 347889999999999999877678999999987 6999999999999999
Q ss_pred ChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc---ccceeeecCCEEEEEeCChHHHHH
Q 046427 131 DLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN---KYVGVSLVGKTLAVMGFGKVGTEV 207 (595)
Q Consensus 131 D~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~IG~~v 207 (595)
|+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.+. .+.+.++.|+||||||+|+||+.+
T Consensus 80 d~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~ 159 (311)
T 2cuk_A 80 DLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAV 159 (311)
T ss_dssp CHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHH
T ss_pred CHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999642 235789999999999999999999
Q ss_pred HHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchh
Q 046427 208 ARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287 (595)
Q Consensus 208 A~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v 287 (595)
|+++++|||+|++||++..... +...++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++
T Consensus 160 A~~l~~~G~~V~~~d~~~~~~~-----~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~v 234 (311)
T 2cuk_A 160 AKRALAFGMRVVYHARTPKPLP-----YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALV 234 (311)
T ss_dssp HHHHHHTTCEEEEECSSCCSSS-----SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGB
T ss_pred HHHHHHCCCEEEEECCCCcccc-----cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCcc
Confidence 9999999999999999764321 34568999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 046427 288 DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAV 364 (595)
Q Consensus 288 d~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~v 364 (595)
|+++|.++|+ |+++||++|||+.||++.++|||+++|+++|||++++|.|++.+++..+++|+.+|++|+.+.+.|
T Consensus 235 d~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 310 (311)
T 2cuk_A 235 DTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPV 310 (311)
T ss_dssp CHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBC
T ss_pred CHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 9999999999 999999999999999889999999999999999999999999999999999999999998877655
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-62 Score=511.18 Aligned_cols=308 Identities=24% Similarity=0.330 Sum_probs=273.9
Q ss_pred eEEEec--CCChhHHHHhhcCC--cEEecC-CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCC--ceEEEEccccc
Q 046427 55 TVLVAE--KLGEAGLDVLKNFA--NVDCSY-NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR--LKVVGRAGVGI 127 (595)
Q Consensus 55 ~il~~~--~~~~~~~~~l~~~~--~v~~~~-~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~--Lk~I~~~g~G~ 127 (595)
||++++ ...+..++.|.+.. ++.+.. ..+++++.+.++++|++++++.+++++++++++ |+ ||+|++.|+||
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G~ 80 (331)
T 1xdw_A 2 KVLCYGVRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIY-KKLGVKYILTRTAGT 80 (331)
T ss_dssp EEEECSCCTTTHHHHHHHGGGTCCEEEECSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHH-HHHTCCEEEESSSCC
T ss_pred EEEEEecCccCHHHHHHHHHhcCeEEEECCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhC-cccCceEEEEccccc
Confidence 688854 45566677775433 444432 235578888999999999987778999999987 47 99999999999
Q ss_pred cccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccc-cccceeeecCCEEEEEeCChHHHH
Q 046427 128 DNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQR-NKYVGVSLVGKTLAVMGFGKVGTE 206 (595)
Q Consensus 128 d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~-~~~~g~~l~gktvGIIGlG~IG~~ 206 (595)
||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.. ....+.++.|+||||||+|.||+.
T Consensus 81 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~ 160 (331)
T 1xdw_A 81 DHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRV 160 (331)
T ss_dssp TTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCSHHHHH
T ss_pred cccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999964 345678999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCch
Q 046427 207 VARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 207 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~ 286 (595)
+|+++++|||+|++||++.... +. ..+...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++
T Consensus 161 ~A~~l~~~G~~V~~~d~~~~~~-~~-~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~ 238 (331)
T 1xdw_A 161 AAQIFHGMGATVIGEDVFEIKG-IE-DYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQL 238 (331)
T ss_dssp HHHHHHHTTCEEEEECSSCCCS-CT-TTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGG
T ss_pred HHHHHHHCCCEEEEECCCccHH-HH-hccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCccc
Confidence 9999999999999999976432 12 234566899999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhcCCeeEEEEecCCCCCC--CCC-------c----ccccC-CcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 046427 287 VDEEALVRALDSGIISQAALDVFTEEPP--AKD-------S----KLVLH-ENVTVTPHLGASTTEAQEGVAIEIAEAVI 352 (595)
Q Consensus 287 vd~~aL~~aL~~g~i~ga~lDv~~~EP~--~~~-------~----~L~~~-~nvilTPHi~~~t~ea~~~~~~~~~~~l~ 352 (595)
+|+++|+++|++|+|+||+||||++||+ +.+ + |||++ |||++|||+|++|.|++.+++..+++|+.
T Consensus 239 vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~ 318 (331)
T 1xdw_A 239 VDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLK 318 (331)
T ss_dssp BCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999994 332 3 79999 99999999999999999999999999999
Q ss_pred HHHcCCCCCcccc
Q 046427 353 GALKGELAATAVN 365 (595)
Q Consensus 353 ~~l~g~~~~~~vn 365 (595)
+|++|+.+.+.||
T Consensus 319 ~~~~g~~~~~~v~ 331 (331)
T 1xdw_A 319 DLAETGDCPNKIK 331 (331)
T ss_dssp HHHHHSCCTTBCC
T ss_pred HHHcCCCCCCCCC
Confidence 9999998888776
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-61 Score=504.54 Aligned_cols=313 Identities=32% Similarity=0.508 Sum_probs=289.0
Q ss_pred CCCeEEEecCCChhHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccC
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVD 131 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD 131 (595)
|++|||+++.+.+..++.|++.+++.+....+.+++.+.++++|++++++.+++++++++++ |+||||++.|+|+||||
T Consensus 1 m~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id 79 (333)
T 2d0i_A 1 MRPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENA-ERLKVISCHSAGYDNID 79 (333)
T ss_dssp CCSEEEECSCCCHHHHHHHHTTSEEEECCSCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTC-TTCCEEEESSSCCTTBC
T ss_pred CCcEEEEECCCCHHHHHHHHhcCCEEEeCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhC-CCceEEEECCccccccc
Confidence 46899999999999999998766666543357889999999999999888788999999987 69999999999999999
Q ss_pred hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc--ccce----eeecCCEEEEEeCChHHH
Q 046427 132 LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN--KYVG----VSLVGKTLAVMGFGKVGT 205 (595)
Q Consensus 132 ~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~--~~~g----~~l~gktvGIIGlG~IG~ 205 (595)
+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+|+|.|.+. ...| .+|.|++|||||+|.||+
T Consensus 80 ~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~ 159 (333)
T 2d0i_A 80 LEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGK 159 (333)
T ss_dssp HHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHH
T ss_pred HHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHH
Confidence 9999999999999999999999999999999999999999999999999642 1346 799999999999999999
Q ss_pred HHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 206 EVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 206 ~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
.+|+++++|||+|++||++...+.+.+.|+...++++++++||+|++|+|.+++|+++++++.++.||+| +|||++||.
T Consensus 160 ~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~ 238 (333)
T 2d0i_A 160 AIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGA 238 (333)
T ss_dssp HHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGG
T ss_pred HHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCc
Confidence 9999999999999999998765555566777679999999999999999999999999999899999999 999999999
Q ss_pred hhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCC-cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 046427 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHE-NVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAV 364 (595)
Q Consensus 286 ~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~-nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~v 364 (595)
++|+++|.++|++|+++|||+|||++||++ ++|||++| ||++|||+++.|.|++.+++..+++|+.+|++|+.+.+.|
T Consensus 239 ~vd~~aL~~aL~~~~i~gaglDv~~~EP~~-~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~v 317 (333)
T 2d0i_A 239 LVDEKAVTEAIKQGKLKGYATDVFEKEPVR-EHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPEDLV 317 (333)
T ss_dssp GBCHHHHHHHHHTTCBCEEEESCCSSSSCS-CCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTCCCTTBS
T ss_pred ccCHHHHHHHHHcCCceEEEecCCCCCCCC-CchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCcCcc
Confidence 999999999999999999999999999987 89999999 9999999999999999999999999999999999999999
Q ss_pred cCC
Q 046427 365 NAP 367 (595)
Q Consensus 365 n~~ 367 (595)
|..
T Consensus 318 ~~~ 320 (333)
T 2d0i_A 318 NKE 320 (333)
T ss_dssp CTT
T ss_pred CHH
Confidence 854
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-60 Score=505.98 Aligned_cols=319 Identities=25% Similarity=0.349 Sum_probs=287.9
Q ss_pred CCCeEEEecC-C--ChhHHHHhhcCCcEEecCCCCHhHHhhhcC-----CceEEEEcC------CCCCCHHHHhccCCCc
Q 046427 52 SKPTVLVAEK-L--GEAGLDVLKNFANVDCSYNLSPEELCTKIS-----LCDALIVRS------GTKVTREVFESSAGRL 117 (595)
Q Consensus 52 ~~~~il~~~~-~--~~~~~~~l~~~~~v~~~~~~~~~el~~~i~-----~~d~li~~~------~~~i~~~~l~~~~~~L 117 (595)
++||||+++. + .+..++.|++.+++......+++++.+.++ ++|++++++ .+++++++|++++++|
T Consensus 2 ~~~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (348)
T 2w2k_A 2 PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSL 81 (348)
T ss_dssp CCCEEEECSSCCSSCHHHHHHHHHHSEEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTC
T ss_pred CCcEEEEECCccccChHHHHHHHhcceEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCc
Confidence 4689999988 5 356777887766776555567899998887 899988742 3589999999884469
Q ss_pred eEEEEccccccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCc---ccccc----cceeee
Q 046427 118 KVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGK---WQRNK----YVGVSL 190 (595)
Q Consensus 118 k~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~---W~~~~----~~g~~l 190 (595)
|||+++|+||||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|+ |.+.. ..|.+|
T Consensus 82 k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~l 161 (348)
T 2w2k_A 82 KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNP 161 (348)
T ss_dssp CEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCCS
T ss_pred eEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 94321 357899
Q ss_pred cCCEEEEEeCChHHHHHHHHHh-cCCCEEEEECCCC-cHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHH
Q 046427 191 VGKTLAVMGFGKVGTEVARRAK-GLGMNVIAHDPYA-QADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
+|++|||||+|+||+.+|++++ +|||+|++||++. ..+.+.+.|+..+ ++++++++||+|++|+|++++|+++++++
T Consensus 162 ~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~ 241 (348)
T 2w2k_A 162 RGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEA 241 (348)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHH
T ss_pred CCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHH
Confidence 9999999999999999999999 9999999999986 4444556687776 89999999999999999999999999999
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEI 347 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~ 347 (595)
.++.||+|++|||++||+++|+++|.++|++|+++||++|||+.|| +.++|||.+|||++|||+++.|.|++.+++..+
T Consensus 242 ~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~ 320 (348)
T 2w2k_A 242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFERLT 320 (348)
T ss_dssp HHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSEEECCSCTTCSHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCEEEcCcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 578899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCccccCCCCCh
Q 046427 348 AEAVIGALKGELAATAVNAPMVPA 371 (595)
Q Consensus 348 ~~~l~~~l~g~~~~~~vn~~~~~~ 371 (595)
++|+.+|++|+.+.+.||.+.+++
T Consensus 321 ~~ni~~~~~g~~~~~~v~~~~~~~ 344 (348)
T 2w2k_A 321 MTNIDRFLLQGKPLLTPAGKVFAP 344 (348)
T ss_dssp HHHHHHHHHTCCCCSSBCSCCCCC
T ss_pred HHHHHHHHcCCCCcceecccccCc
Confidence 999999999999999999887654
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=501.87 Aligned_cols=309 Identities=27% Similarity=0.381 Sum_probs=280.5
Q ss_pred CCCCeEEEecCCChhHHHHhhcCCcEEecC-CCCHhH-HhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccc
Q 046427 51 TSKPTVLVAEKLGEAGLDVLKNFANVDCSY-NLSPEE-LCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGID 128 (595)
Q Consensus 51 ~~~~~il~~~~~~~~~~~~l~~~~~v~~~~-~~~~~e-l~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d 128 (595)
|++++||+++.+.+..++.|++.+++.... ..+.++ +.+.++++|++++++.+++++++++++ |+||||+++|+|||
T Consensus 21 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d 99 (333)
T 3ba1_A 21 MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDAL-PKLEIVSSFSVGLD 99 (333)
T ss_dssp -CCCEEEECSCCCHHHHHHHHHHSEEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHC-TTCCEEEESSSCCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHhcCCEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhC-CCCcEEEEcCcccc
Confidence 346899999999999999888766665432 234444 666789999999987778999999987 69999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc-cceeeecCCEEEEEeCChHHHHH
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK-YVGVSLVGKTLAVMGFGKVGTEV 207 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~-~~g~~l~gktvGIIGlG~IG~~v 207 (595)
|||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+|+|.|.+.. ..|.+++||+|||||+|+||+.+
T Consensus 100 ~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~iG~~v 179 (333)
T 3ba1_A 100 KVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAV 179 (333)
T ss_dssp TBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHHHH
T ss_pred ccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997533 35789999999999999999999
Q ss_pred HHHHhcCCCEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCch
Q 046427 208 ARRAKGLGMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 208 A~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~ 286 (595)
|+++++|||+|++||++.... .|+. ..++++++++||+|++|+|++++|+++++++.++.||+|++|||++||.+
T Consensus 180 A~~l~~~G~~V~~~dr~~~~~----~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~ 255 (333)
T 3ba1_A 180 AERAEAFDCPISYFSRSKKPN----TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH 255 (333)
T ss_dssp HHHHHTTTCCEEEECSSCCTT----CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGG
T ss_pred HHHHHHCCCEEEEECCCchhc----cCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCch
Confidence 999999999999999876422 2554 35899999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 046427 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVN 365 (595)
Q Consensus 287 vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 365 (595)
+|+++|.++|++|+++||++|||+.||++. +|||++|||++|||+|+.|.|++.+++..+++|+.+|++|+++.+.||
T Consensus 256 vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~-~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn 333 (333)
T 3ba1_A 256 VDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTPVV 333 (333)
T ss_dssp BCHHHHHHHHHHTSSCEEEESCCTTTTCCC-GGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCSSBCC
T ss_pred hCHHHHHHHHHcCCCeEEEEecCCCCCCCc-chhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 999999999999999999999999999865 999999999999999999999999999999999999999998888776
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-60 Score=500.59 Aligned_cols=310 Identities=30% Similarity=0.453 Sum_probs=276.2
Q ss_pred CCCCeEEEecCCC-hhHHHHhhcCCcEEecCCCCHhHHhhhc-CCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccc
Q 046427 51 TSKPTVLVAEKLG-EAGLDVLKNFANVDCSYNLSPEELCTKI-SLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGID 128 (595)
Q Consensus 51 ~~~~~il~~~~~~-~~~~~~l~~~~~v~~~~~~~~~el~~~i-~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d 128 (595)
+.+|+|++.+... ...++.++...++......+.+|+.+.+ .++|+++++..+++++++++++ |+||+|++.|+|||
T Consensus 19 ~~kp~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d 97 (347)
T 1mx3_A 19 SHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVRIGSGFD 97 (347)
T ss_dssp --CCEEEESSCSCCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEESSSCCT
T ss_pred CCCCEEEEEcCCcchhhHHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhC-CCCCEEEEcccccC
Confidence 4478888877422 2236777776677665556677777765 7889988877778999999998 69999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc------cce-eeecCCEEEEEeCC
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK------YVG-VSLVGKTLAVMGFG 201 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~------~~g-~~l~gktvGIIGlG 201 (595)
|||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.... ..| .+++|+||||||+|
T Consensus 98 ~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G 177 (347)
T 1mx3_A 98 NIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLG 177 (347)
T ss_dssp TBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCS
T ss_pred cccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeEC
Confidence 99999999999999999999999999999999999999999999999999996421 113 68999999999999
Q ss_pred hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEe
Q 046427 202 KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 202 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
+||+.+|+++++|||+|++||++.....+...|+..+ ++++++++||+|++|+|++++|+++|+++.|+.||+|++|||
T Consensus 178 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN 257 (347)
T 1mx3_A 178 RVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257 (347)
T ss_dssp HHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEE
Confidence 9999999999999999999999875444566777654 899999999999999999999999999999999999999999
Q ss_pred ccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCC-CCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 046427 281 VARGGVVDEEALVRALDSGIISQAALDVFTEEPPA-KDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGEL 359 (595)
Q Consensus 281 ~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~-~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~ 359 (595)
++||+++|+++|+++|++|+|+||++|||+.||++ .++|||.+||+++|||++++|.+++.++...+++|+.+|++|+.
T Consensus 258 ~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~~g~~ 337 (347)
T 1mx3_A 258 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRI 337 (347)
T ss_dssp CSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999986 47899999999999999999999999999999999999999987
Q ss_pred CC
Q 046427 360 AA 361 (595)
Q Consensus 360 ~~ 361 (595)
+.
T Consensus 338 ~~ 339 (347)
T 1mx3_A 338 PD 339 (347)
T ss_dssp TT
T ss_pred Cc
Confidence 65
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-60 Score=496.26 Aligned_cols=312 Identities=35% Similarity=0.599 Sum_probs=287.8
Q ss_pred CCCeEEEecCCChhHHHHhhcCCcEEecCC---CCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGID 128 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~~v~~~~~---~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d 128 (595)
|++|||+++.+.+...+.|++.+++.+... .+.+++.+.++++|++++++.+++++++++++ |+||||++.|+|||
T Consensus 1 m~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d 79 (334)
T 2dbq_A 1 MKPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENA-PKLRIVANYAVGYD 79 (334)
T ss_dssp CCCEEEESSCCCHHHHHHHHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTC-TTCCEEEESSSCCT
T ss_pred CCcEEEEecCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhC-CCceEEEECCcccc
Confidence 357899999998888888887667665332 46889999999999999987778999999987 69999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccc----c---cccceeeecCCEEEEEeCC
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQ----R---NKYVGVSLVGKTLAVMGFG 201 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~----~---~~~~g~~l~gktvGIIGlG 201 (595)
|||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|. + ..+.|.++.|++|||||+|
T Consensus 80 ~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G 159 (334)
T 2dbq_A 80 NIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLG 159 (334)
T ss_dssp TBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCS
T ss_pred cccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999996 2 1234789999999999999
Q ss_pred hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 202 KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 202 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
.||+.+|++++++||+|++||++...+.+.+.|+...++++++++||+|++|+|.+++|+++++++.+..||+|++|||+
T Consensus 160 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~ 239 (334)
T 2dbq_A 160 RIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINI 239 (334)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEEC
Confidence 99999999999999999999998755545566777779999999999999999999999999999999999999999999
Q ss_pred cCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 046427 282 ARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA 361 (595)
Q Consensus 282 arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 361 (595)
+||.++|+++|.++|++|+++||++|||++|| ++++|||.++||++|||+|+.|.+++.+++..+++|+.+|++|+.+.
T Consensus 240 srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP-~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~ 318 (334)
T 2dbq_A 240 ARGKVVDTNALVKALKEGWIAGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPP 318 (334)
T ss_dssp SCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS-CCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCCcccCHHHHHHHHHhCCeeEEEecCCCCCC-CCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999999 78899999999999999999999999999999999999999999999
Q ss_pred cccc
Q 046427 362 TAVN 365 (595)
Q Consensus 362 ~~vn 365 (595)
+.||
T Consensus 319 ~~v~ 322 (334)
T 2dbq_A 319 TLVN 322 (334)
T ss_dssp TBSC
T ss_pred cccC
Confidence 9888
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-59 Score=491.89 Aligned_cols=315 Identities=27% Similarity=0.438 Sum_probs=288.1
Q ss_pred CCCCeEEEecCCChhHHHHhhcC--CcEEecC---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccc
Q 046427 51 TSKPTVLVAEKLGEAGLDVLKNF--ANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGV 125 (595)
Q Consensus 51 ~~~~~il~~~~~~~~~~~~l~~~--~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~ 125 (595)
.++++||+++.+.+...+.|++. .++.... ..+++++.+.++++|++++++.++++++++++++|+||||++.|+
T Consensus 6 ~~~~~il~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~ 85 (330)
T 2gcg_A 6 VRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSV 85 (330)
T ss_dssp -CCEEEEESSCCCHHHHHHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESSS
T ss_pred CCCCEEEEECCCCHHHHHHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEECCc
Confidence 35678999999988888888876 4555432 346789999999999999877778999999987459999999999
Q ss_pred cccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc---ccceeeecCCEEEEEeCCh
Q 046427 126 GIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN---KYVGVSLVGKTLAVMGFGK 202 (595)
Q Consensus 126 G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~ 202 (595)
||||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.+. .+.|.++.|++|||||+|.
T Consensus 86 G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~ 165 (330)
T 2gcg_A 86 GIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGR 165 (330)
T ss_dssp CCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSH
T ss_pred ccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999999999999999999742 2357899999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 203 VGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 203 IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
||+.+|++++++||+|++||++. ..+.+.+.|+...++++++++||+|++|+|.+++|+++++++.++.||+|++|||+
T Consensus 166 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~ 245 (330)
T 2gcg_A 166 IGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245 (330)
T ss_dssp HHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEEC
Confidence 99999999999999999999876 34445566776669999999999999999999999999999999999999999999
Q ss_pred cCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 046427 282 ARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA 361 (595)
Q Consensus 282 arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 361 (595)
+||+++|+++|.++|++|+++||++|||++||++.++|||+++|+++|||+|+.|.|++.+++..+++|+.+|++|+++.
T Consensus 246 srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~ 325 (330)
T 2gcg_A 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMP 325 (330)
T ss_dssp SCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999999888
Q ss_pred cccc
Q 046427 362 TAVN 365 (595)
Q Consensus 362 ~~vn 365 (595)
+.||
T Consensus 326 ~~v~ 329 (330)
T 2gcg_A 326 SELK 329 (330)
T ss_dssp TEEC
T ss_pred CCCC
Confidence 8887
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-60 Score=495.03 Aligned_cols=297 Identities=22% Similarity=0.277 Sum_probs=259.1
Q ss_pred CCCeEEEecCCC--hhHHHHhhc-CCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccc
Q 046427 52 SKPTVLVAEKLG--EAGLDVLKN-FANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGID 128 (595)
Q Consensus 52 ~~~~il~~~~~~--~~~~~~l~~-~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d 128 (595)
|.+||++..... +...+.|++ ++++++... +.+ ...++|+++++. .++++++. |+||||++.|+|||
T Consensus 2 ~~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~-~~~----~~~~ad~~i~~~---~~~~~l~~--~~Lk~I~~~~aG~d 71 (315)
T 3pp8_A 2 NAMEIIFYHPTFNAAWWVNALEKALPHARVREW-KVG----DNNPADYALVWQ---PPVEMLAG--RRLKAVFVLGAGVD 71 (315)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHHHSTTEEEEEC-CTT----CCSCCSEEEESS---CCHHHHTT--CCCSEEEESSSCCH
T ss_pred CceEEEEEcCCCchHHHHHHHHHHCCCCEEEec-CCC----CccCcEEEEECC---CCHHHhCC--CCceEEEECCEecc
Confidence 457899877654 445566664 346555322 111 356999999853 58999987 59999999999999
Q ss_pred cc-C-hhh---HHhCCceEEeCCCCC-chHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCCh
Q 046427 129 NV-D-LSA---ATEHGCLVVNAPTAN-TIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGK 202 (595)
Q Consensus 129 ~i-D-~~a---a~~~gI~V~n~p~~~-~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~ 202 (595)
|| | +++ +.++||.|+|+|+++ +.+||||++++||+++|+++.+++.+++|+|.+. .+.+++||||||||+|+
T Consensus 72 ~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~--~~~~l~g~tvGIiG~G~ 149 (315)
T 3pp8_A 72 AILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL--PEYTREEFSVGIMGAGV 149 (315)
T ss_dssp HHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC--CCCCSTTCCEEEECCSH
T ss_pred cccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC--CCCCcCCCEEEEEeeCH
Confidence 99 7 887 788999999999865 7999999999999999999999999999999864 57899999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc----ccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEE
Q 046427 203 VGTEVARRAKGLGMNVIAHDPYAQADRARATGVG----LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRI 278 (595)
Q Consensus 203 IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~----~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gail 278 (595)
||+.+|+++++|||+|++||++.... .++. ..++++++++||+|++|+|++++|+++|+++.|+.||+|++|
T Consensus 150 IG~~vA~~l~~~G~~V~~~dr~~~~~----~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gail 225 (315)
T 3pp8_A 150 LGAKVAESLQAWGFPLRCWSRSRKSW----PGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYV 225 (315)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCCCC----TTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhh----hhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEE
Confidence 99999999999999999999876321 1221 247999999999999999999999999999999999999999
Q ss_pred EeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 046427 279 VNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGE 358 (595)
Q Consensus 279 iN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~ 358 (595)
||+|||+++|+++|+++|++|+++||+||||++||++.++|||++|||++|||+|++|.+ .++...+++|+.+|++|+
T Consensus 226 IN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G~ 303 (315)
T 3pp8_A 226 LNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGE 303 (315)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHTC
T ss_pred EECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999986 468899999999999999
Q ss_pred CCCccccC
Q 046427 359 LAATAVNA 366 (595)
Q Consensus 359 ~~~~~vn~ 366 (595)
++.+.||.
T Consensus 304 ~~~~~V~~ 311 (315)
T 3pp8_A 304 PVTGQVDR 311 (315)
T ss_dssp CCCCBCCC
T ss_pred CCCceECc
Confidence 99999985
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=481.43 Aligned_cols=293 Identities=23% Similarity=0.276 Sum_probs=265.2
Q ss_pred eEEEecCCChhHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhh
Q 046427 55 TVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSA 134 (595)
Q Consensus 55 ~il~~~~~~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~a 134 (595)
|||+++.+.+...+.|++.. .++. .+.++++|+++++. .+.++++++ |+||||++.|+|+||||+++
T Consensus 2 ~il~~~~~~~~~~~~l~~~~-~~v~--------~~~~~~~d~~i~~~---~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~ 68 (303)
T 1qp8_A 2 ELYVNFELPPEAEEELRKYF-KIVR--------GGDLGNVEAALVSR---ITAEELAKM-PRLKFIQVVTAGLDHLPWES 68 (303)
T ss_dssp EEECCSCCCHHHHHHHHTTC-EEEC--------SSCCTTBCCCCBSC---CCHHHHHHC-TTCCCEEBSSSCCTTSCCTT
T ss_pred EEEEccCCCHHHHHHHHhcC-Cccc--------hhhhCCCEEEEECC---CCHHHHhhC-CCCcEEEECCcCcccccHHH
Confidence 79999999999888887752 2221 14678999988754 467999987 69999999999999999998
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcC
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGL 214 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~ 214 (595)
+ ++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.+. ..+.++.||||||||+|+||+.+|+++++|
T Consensus 69 ~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~-~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~ 146 (303)
T 1qp8_A 69 I-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD-VEIPLIQGEKVAVLGLGEIGTRVGKILAAL 146 (303)
T ss_dssp S-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-SCCCCCTTCEEEEESCSTHHHHHHHHHHHT
T ss_pred H-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCC-CCCCCCCCCEEEEEccCHHHHHHHHHHHHC
Confidence 5 79999999999999999999999999999999999999999999753 234589999999999999999999999999
Q ss_pred CCEEEEECCCCcHHHHHHcCC-cccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHH
Q 046427 215 GMNVIAHDPYAQADRARATGV-GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293 (595)
Q Consensus 215 G~~V~~~d~~~~~~~a~~~g~-~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~ 293 (595)
||+|++||++.. +. +. ...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+
T Consensus 147 G~~V~~~dr~~~-~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~ 221 (303)
T 1qp8_A 147 GAQVRGFSRTPK-EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVL 221 (303)
T ss_dssp TCEEEEECSSCC-CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHH
T ss_pred CCEEEEECCCcc-cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHH
Confidence 999999998765 21 33 3458999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeeEEEEecC-CCCCCCCCcccccCCcEEEcCCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCccccCC
Q 046427 294 RALDSGIISQAALDVF-TEEPPAKDSKLVLHENVTVTPHLGAS--TTEAQEGVAIEIAEAVIGALKGELAATAVNAP 367 (595)
Q Consensus 294 ~aL~~g~i~ga~lDv~-~~EP~~~~~~L~~~~nvilTPHi~~~--t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~ 367 (595)
++|++|+++||++||| ++||+++++|||++||+++|||++++ |.|++.+++..+++|+.+|++|+.+.+.||..
T Consensus 222 ~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~~~ 298 (303)
T 1qp8_A 222 RILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIAKRE 298 (303)
T ss_dssp HHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSCCSCBCCGG
T ss_pred HHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCceeCHH
Confidence 9999999999999999 88999889999999999999999998 99999999999999999999999999988843
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-57 Score=478.14 Aligned_cols=279 Identities=28% Similarity=0.405 Sum_probs=248.9
Q ss_pred CCCeEEEecCCChhHHHHhhcCCcEEecCC--CCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYN--LSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDN 129 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~~v~~~~~--~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~ 129 (595)
+++|||+.+.++ ...+.+++.+++.+... .+.+ .++++|++++++.+++++++++ + ++||||+++|+|+||
T Consensus 2 ~mmkIl~~~~~p-~~~~~~~~~~~v~~~~~~~~~~~----~l~~ad~li~~~~~~v~~~ll~-~-~~Lk~I~~~~~G~D~ 74 (381)
T 3oet_A 2 NAMKILVDENMP-YARELFSRLGEVKAVPGRPIPVE----ELNHADALMVRSVTKVNESLLS-G-TPINFVGTATAGTDH 74 (381)
T ss_dssp CCCEEEEETTST-THHHHHTTSSEEEEECC---CHH----HHTTCSEEEECTTSCBSHHHHT-T-SCCCEEEESSSCCTT
T ss_pred CceEEEECCCCc-HHHHHHhhCCcEEEeCCCCCCHH----HHCCCEEEEECCCCCCCHHHHc-C-CCCEEEEEccccccc
Confidence 347899998875 45778888888766432 2333 4789999999988899999999 4 469999999999999
Q ss_pred cChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHH
Q 046427 130 VDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVAR 209 (595)
Q Consensus 130 iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~ 209 (595)
||+++|+++||.|+|+||+|+.+||||+++++|+++|+. |.+|+||||||||+|+||+.+|+
T Consensus 75 iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~------------------g~~l~gktvGIIGlG~IG~~vA~ 136 (381)
T 3oet_A 75 VDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD------------------GFSLRDRTIGIVGVGNVGSRLQT 136 (381)
T ss_dssp BCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT------------------TCCGGGCEEEEECCSHHHHHHHH
T ss_pred cCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc------------------CCccCCCEEEEEeECHHHHHHHH
Confidence 999999999999999999999999999999999999852 45799999999999999999999
Q ss_pred HHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChh----ccccccHHHHhcCCCceEEEeccCCc
Q 046427 210 RAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPA----TSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 210 ~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~----t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
++++|||+|++||++.. ....+....++++++++||+|++|+|++++ |+++++++.|+.||+|++|||+|||+
T Consensus 137 ~l~a~G~~V~~~d~~~~---~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~ 213 (381)
T 3oet_A 137 RLEALGIRTLLCDPPRA---ARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213 (381)
T ss_dssp HHHHTTCEEEEECHHHH---HTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGG
T ss_pred HHHHCCCEEEEECCChH---HhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCc
Confidence 99999999999998432 112445667999999999999999999999 99999999999999999999999999
Q ss_pred hhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 046427 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELA 360 (595)
Q Consensus 286 ~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~ 360 (595)
++|+++|+++|++|+++||+||||++||++ +++||.++ +++|||+||+|.|++.+++.++++|+.+|+.+...
T Consensus 214 vvde~aL~~aL~~g~i~gA~LDV~e~EP~~-~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~~ 286 (381)
T 3oet_A 214 VVDNAALLARLNAGQPLSVVLDVWEGEPDL-NVALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQR 286 (381)
T ss_dssp GBCHHHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccCHHHHHHHHHhCCCeEEEeeccccCCCC-cchhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 999999999999999999999999999985 56799775 78999999999999999999999999999987643
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=461.09 Aligned_cols=278 Identities=28% Similarity=0.356 Sum_probs=240.5
Q ss_pred eEEEecCCCh----hHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccccc
Q 046427 55 TVLVAEKLGE----AGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNV 130 (595)
Q Consensus 55 ~il~~~~~~~----~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~i 130 (595)
+|++..++.. .+.+.|+.+. +.. .+.++++|++++ +..++ ++ |+||||++.|+|||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~---------~~~~~~ad~li~-~~~~~------~~-~~Lk~I~~~~~G~d~i 63 (290)
T 3gvx_A 2 DVYVNFPADGHVREIAKTVLDGFD-LHW---------YPDYYDAEAQVI-KDRYV------LG-KRTKMIQAISAGVDHI 63 (290)
T ss_dssp CEEECSCCCHHHHHHHHHHTTTSC-EEE---------TTSCCCCSEEEE-SSCCC------CC-SSCCEEEECSSCCTTS
T ss_pred ceEEecCCcchHHHHHHHHhcccc-ccc---------Ccchhhhhhhhh-hhhhh------hh-hhhHHHHHHhcCCcee
Confidence 4566666554 4445555442 222 157889999998 44443 44 6999999999999999
Q ss_pred ChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHH
Q 046427 131 DLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARR 210 (595)
Q Consensus 131 D~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~ 210 (595)
|+++|+++||.++| ++.++.+||||++++||+++|+++.+++.+++|+|.+.. ..+|+||||||||+|.||+++|++
T Consensus 64 d~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~--~~~l~g~tvGIIGlG~IG~~vA~~ 140 (290)
T 3gvx_A 64 DVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGYGGIGRRVAHL 140 (290)
T ss_dssp CGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC--CCCCTTCEEEEECCSHHHHHHHHH
T ss_pred ecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCC--ceeeecchheeeccCchhHHHHHH
Confidence 99999997776655 588999999999999999999999999999999998753 368999999999999999999999
Q ss_pred HhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcH
Q 046427 211 AKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289 (595)
Q Consensus 211 l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~ 289 (595)
+++|||+|++||++..... .+... ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+
T Consensus 141 l~~~G~~V~~~dr~~~~~~----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~ 216 (290)
T 3gvx_A 141 AKAFGMRVIAYTRSSVDQN----VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSK 216 (290)
T ss_dssp HHHHTCEEEEECSSCCCTT----CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCH
T ss_pred HHhhCcEEEEEeccccccc----cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCC
Confidence 9999999999999763221 13444 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 046427 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG-ASTTEAQEGVAIEIAEAVIGALKGELA 360 (595)
Q Consensus 290 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~-~~t~ea~~~~~~~~~~~l~~~l~g~~~ 360 (595)
++|+++|++|+++||++|||+.||+ +|||++||+++|||+| ++|.|+++++...+++|+.+|++|++-
T Consensus 217 ~aL~~aL~~g~i~ga~lDV~~~EP~---~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~~ 285 (290)
T 3gvx_A 217 PDMIGFLKERSDVWYLSDVWWNEPE---ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEGH 285 (290)
T ss_dssp HHHHHHHHHCTTCEEEESCCTTTTS---CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC----
T ss_pred cchhhhhhhccceEEeeccccCCcc---cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999999999999986 8999999999999999 999999999999999999999998763
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-54 Score=457.86 Aligned_cols=281 Identities=29% Similarity=0.400 Sum_probs=247.8
Q ss_pred CeEEEecCCChhHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChh
Q 046427 54 PTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLS 133 (595)
Q Consensus 54 ~~il~~~~~~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 133 (595)
+||++.+.++. ..+.+++.+++.+... .+...+.+.++|++++++.+++++++++ + |+||||+++|+|+||||++
T Consensus 1 mkil~~~~~~~-~~~~~~~~~~v~~~~~--~~~~~~~l~~ad~li~~~~~~~~~~~l~-~-~~Lk~I~~~~~G~D~iD~~ 75 (380)
T 2o4c_A 1 MRILADENIPV-VDAFFADQGSIRRLPG--RAIDRAALAEVDVLLVRSVTEVSRAALA-G-SPVRFVGTCTIGTDHLDLD 75 (380)
T ss_dssp CEEEEETTCTT-HHHHHGGGSEEEEECG--GGCSTTTTTTCSEEEECTTSCBCHHHHT-T-SCCCEEEECSSCSTTBCHH
T ss_pred CEEEEecCchH-HHHHHHhCCcEEEecC--CcCChHHHCCcEEEEEcCCCCCCHHHhc-C-CCceEEEEcCcccchhhHH
Confidence 37888887654 4667777666654321 1112234689999999888899999999 6 6999999999999999999
Q ss_pred hHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhc
Q 046427 134 AATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213 (595)
Q Consensus 134 aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~ 213 (595)
+|+++||.|+|+||+|+.+||||++++||+++|+ | |.++.|+||||||+|+||+.+|+++++
T Consensus 76 ~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~------------~------~~~l~g~tvGIIGlG~IG~~vA~~l~~ 137 (380)
T 2o4c_A 76 YFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV------------R------GADLAERTYGVVGAGQVGGRLVEVLRG 137 (380)
T ss_dssp HHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHH------------H------TCCGGGCEEEEECCSHHHHHHHHHHHH
T ss_pred HHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhh------------h------hcccCCCEEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 2 357999999999999999999999999
Q ss_pred CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChh----ccccccHHHHhcCCCceEEEeccCCchhcH
Q 046427 214 LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPA----TSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289 (595)
Q Consensus 214 ~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~----t~~li~~~~l~~mk~gailiN~arg~~vd~ 289 (595)
|||+|++||++... ...+....++++++++||+|++|+|++++ |+++++++.|+.||+|++|||+|||+++|+
T Consensus 138 ~G~~V~~~d~~~~~---~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~ 214 (380)
T 2o4c_A 138 LGWKVLVCDPPRQA---REPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDN 214 (380)
T ss_dssp TTCEEEEECHHHHH---HSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCH
T ss_pred CCCEEEEEcCChhh---hccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCH
Confidence 99999999975421 13455667999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 046427 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAAT 362 (595)
Q Consensus 290 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~ 362 (595)
++|+++|++|+++||+||||++||+ .+++|+. +|+++|||+|++|.|++.++...+++|+.+|+.|....+
T Consensus 215 ~aL~~aL~~g~i~~A~LDV~~~EP~-~~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~~~~ 285 (380)
T 2o4c_A 215 QALRRLLEGGADLEVALDVWEGEPQ-ADPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAERVS 285 (380)
T ss_dssp HHHHHHHHTTCCEEEEESCCTTTTS-CCHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHhCCCceEEeeeeccCCC-Cchhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 9999999999999999999999996 4678886 599999999999999999999999999999999886444
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=347.09 Aligned_cols=271 Identities=17% Similarity=0.196 Sum_probs=232.4
Q ss_pred CCceEEE-EccccccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCC
Q 046427 115 GRLKVVG-RAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGK 193 (595)
Q Consensus 115 ~~Lk~I~-~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 193 (595)
++++.|+ .+++|+|++ ++|+++||.|+|+|++|. +||| +++|++....+.++.| |.+ +.+.++.||
T Consensus 192 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r--~~~~~l~Gk 258 (479)
T 1v8b_A 192 KKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR--ATDFLISGK 258 (479)
T ss_dssp TTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH--HHCCCCTTS
T ss_pred cCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh--ccccccCCC
Confidence 5899998 889999998 899999999999999999 9999 4578999899999988 975 457789999
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM 272 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~m 272 (595)
+|||||+|.||+.+|+++++|||+|++||++... ..+...|++..++++++++||+|++|+ .|+++|+++.|+.|
T Consensus 259 tVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~~M 334 (479)
T 1v8b_A 259 IVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT----GNVDVIKLEHLLKM 334 (479)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC----SSSSSBCHHHHTTC
T ss_pred EEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC----ChhhhcCHHHHhhc
Confidence 9999999999999999999999999999998743 245667887789999999999999995 68999999999999
Q ss_pred CCceEEEeccCCch-hcHHHHHH--HHhcCCeeEEEEecCCCCCCCCCcccccC--CcEEEcCCCC-CCcHH-HHHHHHH
Q 046427 273 KKGVRIVNVARGGV-VDEEALVR--ALDSGIISQAALDVFTEEPPAKDSKLVLH--ENVTVTPHLG-ASTTE-AQEGVAI 345 (595)
Q Consensus 273 k~gailiN~arg~~-vd~~aL~~--aL~~g~i~ga~lDv~~~EP~~~~~~L~~~--~nvilTPHi~-~~t~e-a~~~~~~ 345 (595)
|+|++|||+|||++ ||+++|.+ +|++|+|+ +++|||. ++.++|||.+ +|+++| |+| +++.+ ++..++.
T Consensus 335 K~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~p---lp~~~~l~~l~~~nvv~t-H~atghp~e~~~~s~a~ 409 (479)
T 1v8b_A 335 KNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRIT---LPNGNKIIVLARGRLLNL-GCATGHPAFVMSFSFCN 409 (479)
T ss_dssp CTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEE---CTTSCEEEEEGGGSBHHH-HSSCCSCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEE---CCCCCeeeEecCCCEEEE-eccCCCCchhHHHHHHH
Confidence 99999999999999 99999999 99999997 9999983 4457899988 999999 999 66766 7888999
Q ss_pred HHHHHHHHHHcCC--CCCccccCCCCChhhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCC
Q 046427 346 EIAEAVIGALKGE--LAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARG 413 (595)
Q Consensus 346 ~~~~~l~~~l~g~--~~~~~vn~~~~~~~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a 413 (595)
++++|+..|++|+ ...+.|+. ++..+-+.+.+ +.| +++|....||..+ ..+.+.+.+.|.+.
T Consensus 410 ~~~~ni~~~~~g~~~~l~n~V~~--lp~~~de~va~-l~L-~~lG~~l~~lt~~--q~~yi~v~~~g~~~ 473 (479)
T 1v8b_A 410 QTFAQLDLWQNKDTNKYENKVYL--LPKHLDEKVAL-YHL-KKLNASLTELDDN--QCQFLGVNKSGPFK 473 (479)
T ss_dssp HHHHHHHHHHTTTSSSCCSSEEC--CCHHHHHHHHH-HHH-GGGTCCCCCCCHH--HHHHHTCCTTSCCS
T ss_pred HHHHHHHHHHcCCCCcCCcceEe--CChhhHHHHHH-HHH-HHcCChHhhcChh--hhhhEeeeeCCCCC
Confidence 9999999999998 77776652 33444445555 355 7777776777666 56667777778775
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-39 Score=349.09 Aligned_cols=270 Identities=19% Similarity=0.226 Sum_probs=228.5
Q ss_pred CCceEEE-EccccccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCC
Q 046427 115 GRLKVVG-RAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGK 193 (595)
Q Consensus 115 ~~Lk~I~-~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 193 (595)
+++|.|+ .+++|+|++ ++|+++||.|+|+|++|+ +|||+ ++|++....+.++.| |.+ ..+.++.||
T Consensus 212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~-------l~r~~~~~~~~l~~g-w~~--~~g~~L~Gk 278 (494)
T 3d64_A 212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKS-------KFDNLYGCRESLVDG-IKR--ATDVMIAGK 278 (494)
T ss_dssp TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------HHHHHHHHHTTHHHH-HHH--HHCCCCTTC
T ss_pred hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHH-------HHhhhHhhhhhhhhh-hhh--ccccccCCC
Confidence 5899998 889999998 899999999999999999 99994 458887777777777 865 467899999
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH-HHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD-RARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM 272 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~m 272 (595)
+|||||+|.||+.+|+++++|||+|++||++.... .+...|++..++++++++||+|++|+ +|+++|+++.|+.|
T Consensus 279 tVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~~M 354 (494)
T 3d64_A 279 IAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTAT----GNYHVINHDHMKAM 354 (494)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECS----SSSCSBCHHHHHHC
T ss_pred EEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECC----CcccccCHHHHhhC
Confidence 99999999999999999999999999999987432 44566888889999999999999998 58999999999999
Q ss_pred CCceEEEeccCCch-hcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccC--CcEEEcCCCC-CCcHH-HHHHHHHHH
Q 046427 273 KKGVRIVNVARGGV-VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLH--ENVTVTPHLG-ASTTE-AQEGVAIEI 347 (595)
Q Consensus 273 k~gailiN~arg~~-vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~--~nvilTPHi~-~~t~e-a~~~~~~~~ 347 (595)
|+|++|||+|||++ ||+++| ++|++|+|+ +++|+ +|++.++|||.+ ||+++| |+| +++.+ ++.+++..+
T Consensus 355 K~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~~a~~~ 428 (494)
T 3d64_A 355 RHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNSFTNQT 428 (494)
T ss_dssp CTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHHHHHHH
Confidence 99999999999999 699999 999999996 55554 577778999998 999999 999 66754 788899999
Q ss_pred HHHHHHHHcCCCCCccccCCCCChhhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCC
Q 046427 348 AEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARG 413 (595)
Q Consensus 348 ~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a 413 (595)
++|+..|++|+.+.+.|+. ++.++-+.+.+ +.| +++|..+.||..+ ..+.+.+.+.|.+.
T Consensus 429 ~~ni~~~~~g~~~~n~V~~--lp~~~d~~va~-l~L-~~~g~~~~~l~~~--q~~y~~v~~~g~~~ 488 (494)
T 3d64_A 429 LAQIELFTRGGEYANKVYV--LPKHLDEKVAR-LHL-ARIGAQLSELSDD--QAAYIGVSKAGPFK 488 (494)
T ss_dssp HHHHHHHHHGGGSCSSEEE--CCHHHHHHHHH-HHH-TTTTCCCCCCCHH--HHHHHTCCTTSCCS
T ss_pred HHHHHHHHcCCCCCCceee--CChhHHHHHHH-HHH-HHcCChHHhhChh--hHHhEeeccCCCCC
Confidence 9999999999988888852 23444445555 456 7777777777766 56667777778775
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-28 Score=250.90 Aligned_cols=207 Identities=19% Similarity=0.217 Sum_probs=167.1
Q ss_pred CCCCCeEEEecC--CChhHHHHhhcC-CcEEecCC----------CCHhHHhhhcCCceEEEEc----------------
Q 046427 50 ITSKPTVLVAEK--LGEAGLDVLKNF-ANVDCSYN----------LSPEELCTKISLCDALIVR---------------- 100 (595)
Q Consensus 50 ~~~~~~il~~~~--~~~~~~~~l~~~-~~v~~~~~----------~~~~el~~~i~~~d~li~~---------------- 100 (595)
++..++|++... ......+.|.+. .+|.+... ...+++.+.++++|+++++
T Consensus 2 ~~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~ 81 (293)
T 3d4o_A 2 MLTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSN 81 (293)
T ss_dssp CCTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCS
T ss_pred CccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeeccccc
Confidence 345678888763 333455667664 36654321 1235677788899999875
Q ss_pred CCCCCCHHHHhccCCCceEEEEccccccccCh-hhHHhCCceEEeCC------CCCchHHHHHHHHHHHHHHHchHHHHH
Q 046427 101 SGTKVTREVFESSAGRLKVVGRAGVGIDNVDL-SAATEHGCLVVNAP------TANTIAAAEHGIALLTAMARNIAQADA 173 (595)
Q Consensus 101 ~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~-~aa~~~gI~V~n~p------~~~~~~vAE~~l~l~l~~~R~i~~~~~ 173 (595)
..+++++++++.+ |+||+|+ +|+||+|+ ++|+++||.|+|+| ++|+.+||||+++++|..
T Consensus 82 ~~~~~~~~~l~~~-~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~--------- 148 (293)
T 3d4o_A 82 ESIVLTEEMIEKT-PNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH--------- 148 (293)
T ss_dssp CCCBCCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred CCccchHHHHHhC-CCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh---------
Confidence 2346899999988 5899997 89999998 89999999999998 899999999999998852
Q ss_pred HHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCcc---cCHHHhccccCE
Q 046427 174 SVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGL---VSFEEAISTADF 249 (595)
Q Consensus 174 ~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~---~~l~ell~~aD~ 249 (595)
.+.++.|+++||||+|.||+.+|+++++||++|++||++... +.+.+.|+.. .++++++++||+
T Consensus 149 ------------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDv 216 (293)
T 3d4o_A 149 ------------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDV 216 (293)
T ss_dssp ------------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSE
T ss_pred ------------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCE
Confidence 245799999999999999999999999999999999997632 3344567654 368899999999
Q ss_pred EEEeCCCChhccccccHHHHhcCCCceEEEeccCCch
Q 046427 250 ISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 250 V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~ 286 (595)
|++|+|+ ++++++.++.||+++++||++||+.
T Consensus 217 Vi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~ 248 (293)
T 3d4o_A 217 CINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG 248 (293)
T ss_dssp EEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred EEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence 9999995 6889999999999999999999764
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-27 Score=262.73 Aligned_cols=268 Identities=20% Similarity=0.201 Sum_probs=207.8
Q ss_pred CceEE-EEccccccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCE
Q 046427 116 RLKVV-GRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKT 194 (595)
Q Consensus 116 ~Lk~I-~~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gkt 194 (595)
+++-+ ..+|+|||++ .++.++||.+.|++++|. +|||+ +.|++....+.+..+ |.+ ..+..+.|++
T Consensus 210 ~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~-------~~r~l~~~~~s~~~g-~~r--~~~~~l~Gkt 276 (494)
T 3ce6_A 210 SVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKS-------KFDNKYGTRHSLIDG-INR--GTDALIGGKK 276 (494)
T ss_dssp HCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------TTHHHHHHHHHHHHH-HHH--HHCCCCTTCE
T ss_pred CeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHH-------HHhhhhhhhhhhhHH-HHh--ccCCCCCcCE
Confidence 34444 4789999998 788999999999999999 99994 346666655555555 654 2345789999
Q ss_pred EEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCC
Q 046427 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMK 273 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk 273 (595)
|+|+|+|.||+.+|++++++|++|+++|++.. .+.+.+.|+...+++++++++|+|++|++ +.++++.+.++.||
T Consensus 277 V~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~~mk 352 (494)
T 3ce6_A 277 VLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATG----NKDIIMLEHIKAMK 352 (494)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSS----SSCSBCHHHHHHSC
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCC----CHHHHHHHHHHhcC
Confidence 99999999999999999999999999999874 35677889887789999999999999985 56788888999999
Q ss_pred CceEEEeccCCch-hcHHHHHH-HHhcCCeeEEEEecCCCCCCCCCcc--cccCCcEE----EcCCCCCCcHHHHHHHHH
Q 046427 274 KGVRIVNVARGGV-VDEEALVR-ALDSGIISQAALDVFTEEPPAKDSK--LVLHENVT----VTPHLGASTTEAQEGVAI 345 (595)
Q Consensus 274 ~gailiN~arg~~-vd~~aL~~-aL~~g~i~ga~lDv~~~EP~~~~~~--L~~~~nvi----lTPHi~~~t~ea~~~~~~ 345 (595)
+|++|+|++|++. +|+++|.+ +++++++. +++|+|+.++. .++ |+..++++ +|||+++.+.++. ..
T Consensus 353 ~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~--~~~l~LL~~grlvnL~~~TPH~a~~~~~s~---~~ 426 (494)
T 3ce6_A 353 DHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT--GRSIIVLSEGRLLNLGNATGHPSFVMSNSF---AN 426 (494)
T ss_dssp TTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT--CCEEEEEGGGSCHHHHHSCCSCHHHHHHHH---HH
T ss_pred CCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc--chHHHHHhCCCEEeccCCCCCccccchHHH---HH
Confidence 9999999999998 89999988 88888886 66899876432 344 66678887 9999999888763 67
Q ss_pred HHHHHHHHHHcCCCCCcccc-CCCCChhhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCC
Q 046427 346 EIAEAVIGALKGELAATAVN-APMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARG 413 (595)
Q Consensus 346 ~~~~~l~~~l~g~~~~~~vn-~~~~~~~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a 413 (595)
++.+++..+++|+...+.|. .|..+++.+..+ .| .++|..+.+|..+ ..+.+.+.+.|.|.
T Consensus 427 qa~~ai~~~~~g~~~~~~V~~~P~~~De~vA~l----hL-~~lg~~l~~lt~~--q~~y~~v~~~G~~k 488 (494)
T 3ce6_A 427 QTIAQIELWTKNDEYDNEVYRLPKHLDEKVARI----HV-EALGGHLTKLTKE--QAEYLGVDVEGPYK 488 (494)
T ss_dssp HHHHHHHHHHTGGGCCSSEECCCHHHHHHHHHH----HH-HHHTCCCCCCCHH--HHHHHTCCTTSCCS
T ss_pred HHHHHHHHHHcCCCCCCEEEECHHHHHHHHHHh----hH-HHHHHHHHHhChh--HHHHcccccCCCCC
Confidence 88999999999876665553 344444444333 44 5556555555554 44455566666665
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=233.00 Aligned_cols=209 Identities=16% Similarity=0.178 Sum_probs=161.2
Q ss_pred CCCeEEEecC--CChhHHHHhhcCC-cEEecCCCC-----------HhHHhhhcCCceEEEE----cC----------CC
Q 046427 52 SKPTVLVAEK--LGEAGLDVLKNFA-NVDCSYNLS-----------PEELCTKISLCDALIV----RS----------GT 103 (595)
Q Consensus 52 ~~~~il~~~~--~~~~~~~~l~~~~-~v~~~~~~~-----------~~el~~~i~~~d~li~----~~----------~~ 103 (595)
+.+||++... ......+.|.+.+ +|.... .+ .+++.+.++++|++++ .. .+
T Consensus 6 ~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~-~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~ 84 (300)
T 2rir_A 6 TGLKIAVIGGDARQLEIIRKLTEQQADIYLVG-FDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE 84 (300)
T ss_dssp CSCEEEEESBCHHHHHHHHHHHHTTCEEEEES-CTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEe-ccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence 3468888765 3334456666543 555431 11 2345667889999987 21 35
Q ss_pred C--CCHHHHhccCCCceEEEEccccccccC-hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcc
Q 046427 104 K--VTREVFESSAGRLKVVGRAGVGIDNVD-LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKW 180 (595)
Q Consensus 104 ~--i~~~~l~~~~~~Lk~I~~~g~G~d~iD-~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W 180 (595)
+ +++++++.+ |++|+|+ +|+||+| +++|+++||.|+|+|+++ ++ +++|+++.+ +|.|
T Consensus 85 ~~~~~~~~l~~~-~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~ 144 (300)
T 2rir_A 85 EVVLKQDHLDRT-PAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTI 144 (300)
T ss_dssp CEECCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHH
T ss_pred CccchHHHHhhc-CCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHH
Confidence 6 899999987 5899998 8999999 999999999999999975 22 345766655 4557
Q ss_pred ccc-ccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCc---ccCHHHhccccCEEEEeCC
Q 046427 181 QRN-KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVG---LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 181 ~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~---~~~l~ell~~aD~V~l~~P 255 (595)
... ...+.++.|+++||||+|.||+.+|+++++||++|++||++... +...+.|++ ..++++++++||+|++|+|
T Consensus 145 ~~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p 224 (300)
T 2rir_A 145 MLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIP 224 (300)
T ss_dssp HHHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCS
T ss_pred HHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCC
Confidence 532 23567899999999999999999999999999999999997632 233455664 2479999999999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEeccCCch
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~arg~~ 286 (595)
+ ++++++.++.||+|+++||++||+.
T Consensus 225 ~-----~~i~~~~~~~mk~g~~lin~a~g~~ 250 (300)
T 2rir_A 225 S-----MILNQTVLSSMTPKTLILDLASRPG 250 (300)
T ss_dssp S-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred h-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence 6 6889999999999999999999864
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=220.01 Aligned_cols=245 Identities=18% Similarity=0.199 Sum_probs=183.3
Q ss_pred CChhHHHHhhcCC-cEEec------CCCCHhHHh-----------hhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEc
Q 046427 62 LGEAGLDVLKNFA-NVDCS------YNLSPEELC-----------TKISLCDALIVRSGTKVTREVFESSAGRLKVVGRA 123 (595)
Q Consensus 62 ~~~~~~~~l~~~~-~v~~~------~~~~~~el~-----------~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~ 123 (595)
+.++..+.|.+.+ +|.+. ..++.+++. +.++++|+| +....++++++.... ++..+++..
T Consensus 18 ltP~~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii-~~vk~p~~~e~~~l~-~~~~l~~~~ 95 (377)
T 2vhw_A 18 ITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLL-LKVKEPIAAEYGRLR-HGQILFTFL 95 (377)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEE-ECSSCCCGGGGGGCC-TTCEEEECC
T ss_pred cCHHHHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEE-EEeCCCChHHHhhcC-CCCEEEEEe
Confidence 4566667775543 55442 345555554 234568976 455567777777655 578888888
Q ss_pred cccccccChhhHHhCCceEE----------eCCCCCchHHHHHHHHHHHHHH-HchHHHHHHHHcCcccccccceeeecC
Q 046427 124 GVGIDNVDLSAATEHGCLVV----------NAPTANTIAAAEHGIALLTAMA-RNIAQADASVKAGKWQRNKYVGVSLVG 192 (595)
Q Consensus 124 g~G~d~iD~~aa~~~gI~V~----------n~p~~~~~~vAE~~l~l~l~~~-R~i~~~~~~~~~g~W~~~~~~g~~l~g 192 (595)
..++|..+++++.++||++. |.|.+++. ||++..+++.++ |++. ..+.|+|.... ...++.|
T Consensus 96 ~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~~--ae~ag~~a~~~a~r~l~----~~~~g~~~~~~-~~~~l~g 168 (377)
T 2vhw_A 96 HLAASRACTDALLDSGTTSIAYETVQTADGALPLLAPM--SEVAGRLAAQVGAYHLM----RTQGGRGVLMG-GVPGVEP 168 (377)
T ss_dssp CGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHH--HHHHHHHHHHHHHHHTS----GGGTSCCCCTT-CBTTBCC
T ss_pred cccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCch--HHHHHHHHHHHHHHHHH----HhcCCCccccc-CCCCCCC
Confidence 88999999999999999997 66766654 599985555444 7773 34455543211 1136899
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH-cCCc-------ccCHHHhccccCEEEEeC--CCChhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA-TGVG-------LVSFEEAISTADFISLHM--PLTPATS 261 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-~g~~-------~~~l~ell~~aD~V~l~~--Plt~~t~ 261 (595)
++|+|+|+|.||+.+|+.++++|++|+++|++... +.+.+ .|.. ..+++++++++|+|+.|+ |.+ ++.
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~ 247 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAP 247 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCc
Confidence 99999999999999999999999999999997633 33333 4543 235788899999999977 554 688
Q ss_pred ccccHHHHhcCCCceEEEecc--CCchhcHHHHHHHHhcCCeeEEEEecCCC-CCCCCCcccccCCcEE--EcCCCCCCc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVA--RGGVVDEEALVRALDSGIISQAALDVFTE-EPPAKDSKLVLHENVT--VTPHLGAST 336 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~a--rg~~vd~~aL~~aL~~g~i~ga~lDv~~~-EP~~~~~~L~~~~nvi--lTPHi~~~t 336 (595)
++++++.++.||+|++|||++ +|+ ||+. ||.+.++|+|..+|++ +|||+++.+
T Consensus 248 ~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~ 305 (377)
T 2vhw_A 248 KLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTLFYCVANMPASV 305 (377)
T ss_dssp CCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEEEECBTTGGGGS
T ss_pred ceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEEEEecCCcchhh
Confidence 999999999999999999999 332 6887 8877788999999998 999999998
Q ss_pred HH
Q 046427 337 TE 338 (595)
Q Consensus 337 ~e 338 (595)
..
T Consensus 306 ~~ 307 (377)
T 2vhw_A 306 PK 307 (377)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-19 Score=187.09 Aligned_cols=276 Identities=17% Similarity=0.186 Sum_probs=176.5
Q ss_pred CChhHHHHhhcCC-cEEec------CCCCHhHHhh----------hcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcc
Q 046427 62 LGEAGLDVLKNFA-NVDCS------YNLSPEELCT----------KISLCDALIVRSGTKVTREVFESSAGRLKVVGRAG 124 (595)
Q Consensus 62 ~~~~~~~~l~~~~-~v~~~------~~~~~~el~~----------~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g 124 (595)
+.++..+.|.+.+ +|.+. ..++.+++.+ .+ ++|+|+ ....++.++ ++.+++++++|+...
T Consensus 18 l~P~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il-~vk~p~~~~-~~~l~~~~~~~~~~~ 94 (369)
T 2eez_A 18 LTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVV-KVKEPLPEE-YGFLREGLILFTYLH 94 (369)
T ss_dssp SCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEE-CSSCCCGGG-GGGCCTTCEEEECCC
T ss_pred cCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEE-EECCCCHHH-HhhcCCCcEEEEEec
Confidence 5667777776553 55442 3456666654 45 899866 455566444 666557899999999
Q ss_pred ccccccChhhHHhCCceEE---eCCCC-Cc----hHHHHHHH--HHHHHHHHchHHHHHHHHcCcccccccceeeecCCE
Q 046427 125 VGIDNVDLSAATEHGCLVV---NAPTA-NT----IAAAEHGI--ALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKT 194 (595)
Q Consensus 125 ~G~d~iD~~aa~~~gI~V~---n~p~~-~~----~~vAE~~l--~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gkt 194 (595)
.++|..+++++.++||.+. +.+.. .. .+.++.+- +.++++ +.+..... ..+.|... ..++.+++
T Consensus 95 ~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~-~~l~~~~~--g~~~~~~~---~~~l~~~~ 168 (369)
T 2eez_A 95 LAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGA-QFLEKPKG--GRGVLLGG---VPGVAPAS 168 (369)
T ss_dssp GGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHH-HHTSGGGT--SCCCCTTC---BTBBCCCE
T ss_pred ccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHH-HHHHHhcC--CCceecCC---CCCCCCCE
Confidence 9999999999999999998 55542 11 33444443 444333 22322210 11123221 13689999
Q ss_pred EEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH-cCCc-------ccCHHHhccccCEEEEeCCCCh-hccccc
Q 046427 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA-TGVG-------LVSFEEAISTADFISLHMPLTP-ATSKMF 264 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-~g~~-------~~~l~ell~~aD~V~l~~Plt~-~t~~li 264 (595)
++|+|.|.||+.+|+.++++|++|+++|++... +.+.+ .|.. ..+++++++++|+|+.|+|... .+..++
T Consensus 169 V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li 248 (369)
T 2eez_A 169 VVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLV 248 (369)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCS
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhH
Confidence 999999999999999999999999999987632 33333 4442 2357788999999999999765 577888
Q ss_pred cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEE---------EcCCCCCC
Q 046427 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVT---------VTPHLGAS 335 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvi---------lTPHi~~~ 335 (595)
.++.++.||+|.+|||++-. .| |+ +|++ ||.+.++|++..+++. .|||.++.
T Consensus 249 ~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~ 309 (369)
T 2eez_A 249 TRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTF 309 (369)
T ss_dssp CHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSGGGSHHHHHH
T ss_pred HHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHHH
Confidence 99999999999999999821 12 44 8988 6666678899899998 78998774
Q ss_pred --cHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 046427 336 --TTEAQEGVAIEIAEAVIGALKGELAATAVN 365 (595)
Q Consensus 336 --t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 365 (595)
+.+....+...+.+++..++.+....+.+|
T Consensus 310 ~~~~~~~~~l~~l~~~g~~~~~~~~~l~~~~~ 341 (369)
T 2eez_A 310 ALTNQTLPYVLKLAEKGLDALLEDAALLKGLN 341 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHSCHHHHTTEE
T ss_pred HHHHHHHHHHHHHHhcChhhhhcChHHhcCEE
Confidence 456666777777777766666665555554
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-20 Score=199.22 Aligned_cols=155 Identities=19% Similarity=0.350 Sum_probs=125.9
Q ss_pred eee-ecCCEEEEEeCChHHHHHHHHHhc-CCCEEEEE-CCCCcHHHHHHcCCcccCHHHhccccCE-EEEeCCCChhccc
Q 046427 187 GVS-LVGKTLAVMGFGKVGTEVARRAKG-LGMNVIAH-DPYAQADRARATGVGLVSFEEAISTADF-ISLHMPLTPATSK 262 (595)
Q Consensus 187 g~~-l~gktvGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~~~a~~~g~~~~~l~ell~~aD~-V~l~~Plt~~t~~ 262 (595)
|.+ |+|||+||+|+|+||+.+|+++++ |||+|++| |++... .+...++++++++.+|. .++ +|+ ++|++
T Consensus 206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~-----~~~~gvdl~~L~~~~d~~~~l-~~l-~~t~~ 278 (419)
T 1gtm_A 206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGI-----YNPDGLNADEVLKWKNEHGSV-KDF-PGATN 278 (419)
T ss_dssp TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEE-----EEEEEECHHHHHHHHHHHSSS-TTC-TTSEE
T ss_pred CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccc-----cCccCCCHHHHHHHHHhcCEe-ecC-ccCee
Confidence 557 999999999999999999999999 99999999 554310 11123467777775554 333 576 67888
Q ss_pred cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCC-cccccCCcEEEcCCC----C----
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD-SKLVLHENVTVTPHL----G---- 333 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~-~~L~~~~nvilTPHi----~---- 333 (595)
++.+.|..||+ .+||||+||.+||+++ +++|+.++|++++ +||++.+ ++||..+|+++|||+ |
T Consensus 279 -i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt~ 350 (419)
T 1gtm_A 279 -ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVTV 350 (419)
T ss_dssp -ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHHH
T ss_pred -eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCccee
Confidence 88889999998 5999999999999999 6999999998887 8887543 689999999999999 6
Q ss_pred -------------CCcHHHHHHHHHHHHHHHHHHHc
Q 046427 334 -------------ASTTEAQEGVAIEIAEAVIGALK 356 (595)
Q Consensus 334 -------------~~t~ea~~~~~~~~~~~l~~~l~ 356 (595)
|.++|.+.++...+.+++.++++
T Consensus 351 s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~ 386 (419)
T 1gtm_A 351 SYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYN 386 (419)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888877788888773
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=186.29 Aligned_cols=220 Identities=15% Similarity=0.185 Sum_probs=156.6
Q ss_pred CChhHHHHhhcCC-cEEec------CCCCHhHHhhh---------cCCceEEEEcCCCCCCHHHHhccCCCceEEEEccc
Q 046427 62 LGEAGLDVLKNFA-NVDCS------YNLSPEELCTK---------ISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGV 125 (595)
Q Consensus 62 ~~~~~~~~l~~~~-~v~~~------~~~~~~el~~~---------i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~ 125 (595)
+.++....|...+ +|.+. ..++.++..+. +-++|+++. ... .+++.++.+++++++|+..+.
T Consensus 25 ltP~~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~adiil~-vk~-p~~~~i~~l~~~~~li~~~~~ 102 (401)
T 1x13_A 25 ATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILK-VNA-PLDDEIALLNPGTTLVSFIWP 102 (401)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGSSSEEEC-SSC-CCHHHHTTCCTTCEEEECCCG
T ss_pred CCHHHHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHhcCCeEEE-eCC-CCHHHHHHhcCCCcEEEEecC
Confidence 4556666665443 45442 24555555432 333898774 333 357778877679999999999
Q ss_pred cccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHH--HHHHHcCcccccc-ccee-----eecCCEEEE
Q 046427 126 GIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA--DASVKAGKWQRNK-YVGV-----SLVGKTLAV 197 (595)
Q Consensus 126 G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~--~~~~~~g~W~~~~-~~g~-----~l~gktvGI 197 (595)
|+|++|++++.++||.|. +.++|+|++.++.|.+++.+... +..++.+.|.... +.+. ++.|++|+|
T Consensus 103 ~~d~~~~~al~~~gI~v~-----~~e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~V 177 (401)
T 1x13_A 103 AQNPELMQKLAERNVTVM-----AMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMV 177 (401)
T ss_dssp GGCHHHHHHHHHTTCEEE-----EGGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEE
T ss_pred CCCHHHHHHHHHCCCEEE-----EeehhhhhhhhcccchHHHHHHHHHHHHHHHHHHhcccccCCceeeccCcCCCEEEE
Confidence 999999999999999996 45666777666643333332221 3344444432111 1111 688999999
Q ss_pred EeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc----------------------------CHHHhccccC
Q 046427 198 MGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV----------------------------SFEEAISTAD 248 (595)
Q Consensus 198 IGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~----------------------------~l~ell~~aD 248 (595)
+|+|.||..+++.++++|++|+++|++.. .+.+.+.|...+ +++++++++|
T Consensus 178 iGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aD 257 (401)
T 1x13_A 178 IGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVD 257 (401)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCS
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999873 355566776543 2678889999
Q ss_pred EEEEe--CCCChhccccccHHHHhcCCCceEEEecc--CCchhcH
Q 046427 249 FISLH--MPLTPATSKMFNDEAFFKMKKGVRIVNVA--RGGVVDE 289 (595)
Q Consensus 249 ~V~l~--~Plt~~t~~li~~~~l~~mk~gailiN~a--rg~~vd~ 289 (595)
+|+.| +|.. .+..+++++.++.||+|++|||++ ||+.+++
T Consensus 258 vVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~ 301 (401)
T 1x13_A 258 IIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY 301 (401)
T ss_dssp EEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred EEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence 99999 5532 366889999999999999999999 8887654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=176.32 Aligned_cols=220 Identities=16% Similarity=0.210 Sum_probs=153.5
Q ss_pred CChhHHHHhhcCC-cEEec------CCCCHhHHh-----------hhcCCceEEEEcCCCCC----CHHHHhccCCCceE
Q 046427 62 LGEAGLDVLKNFA-NVDCS------YNLSPEELC-----------TKISLCDALIVRSGTKV----TREVFESSAGRLKV 119 (595)
Q Consensus 62 ~~~~~~~~l~~~~-~v~~~------~~~~~~el~-----------~~i~~~d~li~~~~~~i----~~~~l~~~~~~Lk~ 119 (595)
+.++....|.+.+ +|.+. ..++.++.. +.++++|+++.. ..++ +++.++.+++++++
T Consensus 18 l~P~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v-~~p~~~~~~~~~i~~l~~~~~~ 96 (384)
T 1l7d_A 18 ISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKV-QRPMTAEEGTDEVALIKEGAVL 96 (384)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEE-ECCCCGGGSCCGGGGSCTTCEE
T ss_pred CCHHHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEe-cCcccccCCHHHHHhhccCCEE
Confidence 4555666665543 44431 234555544 356789998865 3466 78888888768999
Q ss_pred EEEccccccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccccc-----ce-eeecCC
Q 046427 120 VGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKY-----VG-VSLVGK 193 (595)
Q Consensus 120 I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~-----~g-~~l~gk 193 (595)
|+....+.|+.|++++.++||.++|. ....+.+++..+. +|+..+.+ ..+..+..+.|.-..+ .+ .++.|+
T Consensus 97 i~~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l~g~ 173 (384)
T 1l7d_A 97 MCHLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGTVPPA 173 (384)
T ss_dssp EEECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEEECCC
T ss_pred EEEecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCCCCCC
Confidence 99999999999999999999999984 2222222233333 22223332 2333444444431111 11 378999
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc---C---------------------------HHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV---S---------------------------FEE 242 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~---~---------------------------l~e 242 (595)
+|+|+|+|.||+.+++.++++|++|+++|++. ..+.+.++|...+ . +++
T Consensus 174 ~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~ 253 (384)
T 1l7d_A 174 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLK 253 (384)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHH
Confidence 99999999999999999999999999999986 4455666775433 1 778
Q ss_pred hccccCEEEEeC--CCChhccccccHHHHhcCCCceEEEecc--CCch
Q 046427 243 AISTADFISLHM--PLTPATSKMFNDEAFFKMKKGVRIVNVA--RGGV 286 (595)
Q Consensus 243 ll~~aD~V~l~~--Plt~~t~~li~~~~l~~mk~gailiN~a--rg~~ 286 (595)
+++++|+|+.|+ |..+ +..+++++.++.||+|++|||++ ||+.
T Consensus 254 ~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~~~gg~ 300 (384)
T 1l7d_A 254 ELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAVEAGGN 300 (384)
T ss_dssp HHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred HhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEecCCCCC
Confidence 889999999887 4332 45788999999999999999999 7764
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=177.20 Aligned_cols=155 Identities=19% Similarity=0.263 Sum_probs=123.3
Q ss_pred ccccccccC-hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCC
Q 046427 123 AGVGIDNVD-LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG 201 (595)
Q Consensus 123 ~g~G~d~iD-~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG 201 (595)
.++|+.... +.++.+.+|+|+|++...+.+..+...+..-++.+.+.. ..+.++.||++||+|+|
T Consensus 155 TttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~r--------------atg~~L~GktVgIiG~G 220 (436)
T 3h9u_A 155 TTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKR--------------ATDVMIAGKTACVCGYG 220 (436)
T ss_dssp SHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHHH--------------HHCCCCTTCEEEEECCS
T ss_pred cCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHHH--------------hcCCcccCCEEEEEeeC
Confidence 567776543 455678999999998766666555444433333332211 13567999999999999
Q ss_pred hHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEe
Q 046427 202 KVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 202 ~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
.||+.+|+++++||++|++||+++. ...+...|++..++++++++||+|++ ++.|.++|+++.|+.||+|++|||
T Consensus 221 ~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK~gAIVIN 296 (436)
T 3h9u_A 221 DVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMRDDAIVCN 296 (436)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCCTTEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcCCCcEEEE
Confidence 9999999999999999999999863 34466778888899999999999997 346899999999999999999999
Q ss_pred ccCCch-hcHHHHHHH
Q 046427 281 VARGGV-VDEEALVRA 295 (595)
Q Consensus 281 ~arg~~-vd~~aL~~a 295 (595)
+|||.+ ||.++|.+.
T Consensus 297 vgRg~vEID~~~L~~~ 312 (436)
T 3h9u_A 297 IGHFDTEIQVAWLKAN 312 (436)
T ss_dssp CSSSGGGBCHHHHHHH
T ss_pred eCCCCCccCHHHHHhh
Confidence 999997 899988764
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=171.00 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=116.8
Q ss_pred ccccccccC-hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCC
Q 046427 123 AGVGIDNVD-LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG 201 (595)
Q Consensus 123 ~g~G~d~iD-~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG 201 (595)
.++|+-..- ....-...++|.|+.+..+. +-+-....+.+.+..+... ..+.++.|||+||+|+|
T Consensus 191 TtTGv~rL~~m~~~g~L~~PvinVnds~tK----~~fDn~yG~~eslvdgI~R----------atg~~L~GKTVgVIG~G 256 (464)
T 3n58_A 191 TTTGVNRLYQLQKKGLLPFPAINVNDSVTK----SKFDNKYGCKESLVDGIRR----------GTDVMMAGKVAVVCGYG 256 (464)
T ss_dssp SHHHHHHHHHHHHHTCCCSCEEECTTSHHH----HTTHHHHHHHHHHHHHHHH----------HHCCCCTTCEEEEECCS
T ss_pred cccchHHHHHHHHcCCCCCCEEeeccHhhh----hhhhhhhcchHHHHHHHHH----------hcCCcccCCEEEEECcC
Confidence 567776542 23334567888888764444 4333333333333222211 13568999999999999
Q ss_pred hHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEe
Q 046427 202 KVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 202 ~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
.||+.+|+++++|||+|+++|+++. ...+...|++.+++++++++||+|+++. .|+++|+++.|+.||+|++|||
T Consensus 257 ~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~GAILIN 332 (464)
T 3n58_A 257 DVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDMCIVGN 332 (464)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTTEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCCeEEEE
Confidence 9999999999999999999988652 3345567888889999999999999865 4789999999999999999999
Q ss_pred ccCCch-hcHHHHHH
Q 046427 281 VARGGV-VDEEALVR 294 (595)
Q Consensus 281 ~arg~~-vd~~aL~~ 294 (595)
+|||.+ +|.++|.+
T Consensus 333 vGRgdvEID~~aL~~ 347 (464)
T 3n58_A 333 IGHFDNEIQVAALRN 347 (464)
T ss_dssp CSSSTTTBTCGGGTT
T ss_pred cCCCCcccCHHHHHh
Confidence 999998 89888864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-17 Score=171.72 Aligned_cols=242 Identities=15% Similarity=0.102 Sum_probs=174.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCC-cHHHHHHcCCc---ccCHHH-hccccCEEEEeCCCChhcc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYA-QADRARATGVG---LVSFEE-AISTADFISLHMPLTPATS 261 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~~~~a~~~g~~---~~~l~e-ll~~aD~V~l~~Plt~~t~ 261 (595)
++.-++|||||+|.||+++|+.++..|+ +|++||++. ..+.+.+.|+. ..++++ ++++||+|++|+|.. .+.
T Consensus 30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~-~~~ 108 (314)
T 3ggo_A 30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFR 108 (314)
T ss_dssp CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG-GHH
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH-HHH
Confidence 3445899999999999999999999999 999999986 34556677762 247888 899999999999954 355
Q ss_pred ccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCC---CCCCCcccccCCcEEEcCCCCCCcHH
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE---PPAKDSKLVLHENVTVTPHLGASTTE 338 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~E---P~~~~~~L~~~~nvilTPHi~~~t~e 338 (595)
.++ ++....++++++|+|++..+....+++.+.+.. ++.+. -=++..| |..+...||....+++||+-+.. .+
T Consensus 109 ~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~-hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~-~~ 184 (314)
T 3ggo_A 109 EIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGG-HPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KK 184 (314)
T ss_dssp HHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECE-EECCCCCCCSGGGCCTTTTTTCEEEECCCTTSC-HH
T ss_pred HHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEec-CcccCCcccchhhhhhhhhcCCEEEEEeCCCCC-HH
Confidence 555 445667999999999998776556666666654 44221 1234333 33456689999999999984433 33
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHHH---------HHHhcCCCCceEEEEE
Q 046427 339 AQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGLA---------VQLVAGGSGVKSVKVS 407 (595)
Q Consensus 339 a~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l~---------~qL~~g~~~~k~v~i~ 407 (595)
..+.+.++++.-+....+..+..++..+..++ ||+.....+..+. .+++++ +|+++++.
T Consensus 185 --------~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~~l~~~~~~~~~~~~~~~~~a~~--~frd~tRi 254 (314)
T 3ggo_A 185 --------RLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGG--GFKDFTRI 254 (314)
T ss_dssp --------HHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSCCGGGCCTT--TTTTHHHH
T ss_pred --------HHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhhccc--cHHHHHHH
Confidence 33455555555555555566778888888777 8775444444333 245666 89999999
Q ss_pred EeecCCCCCcccccchHHHHHhhcccccccccccccHHH
Q 046427 408 YASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADF 446 (595)
Q Consensus 408 ~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~ 446 (595)
+.+++. +|.+....|+..+...|+.+.++...++++.+
T Consensus 255 a~~~p~-~w~di~~~N~~~~~~~l~~~~~~l~~l~~~l~ 292 (314)
T 3ggo_A 255 AKSDPI-MWRDIFLENKENVMKAIEGFEKSLNHLKELIV 292 (314)
T ss_dssp TTSCHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 99999999999877778777765556666554
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-18 Score=181.01 Aligned_cols=210 Identities=16% Similarity=0.160 Sum_probs=163.5
Q ss_pred CCceEEEEccccccccChhhHH-----hCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc----cc
Q 046427 115 GRLKVVGRAGVGIDNVDLSAAT-----EHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN----KY 185 (595)
Q Consensus 115 ~~Lk~I~~~g~G~d~iD~~aa~-----~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~----~~ 185 (595)
+.+++|.+.|+|+|++++.++. ++++.++|.+|+ ..+++++.+.+++.+.|++...... ..+.|.-. ..
T Consensus 80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~~av~~ 157 (404)
T 1gpj_A 80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRI-SEGAVSIGSAAVEL 157 (404)
T ss_dssp HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHHHHHHH
T ss_pred hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhh-cCCCccHHHHHHHH
Confidence 3688899999999999999998 899999999988 5789999999999999998766433 34556321 00
Q ss_pred ce---eeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcCCcc---cCHHHhccccCEEEEeCCC
Q 046427 186 VG---VSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATGVGL---VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 186 ~g---~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g~~~---~~l~ell~~aD~V~l~~Pl 256 (595)
.. .++.|++++|+|+|.||+.+++.++.+|+ +|+++|++... +.+.+.|... .++.++++++|+|+.|+|.
T Consensus 158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~ 237 (404)
T 1gpj_A 158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA 237 (404)
T ss_dssp HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence 01 14789999999999999999999999999 99999997633 3455667643 3677888999999999874
Q ss_pred ChhccccccHHHHhc--CC----CceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEE--
Q 046427 257 TPATSKMFNDEAFFK--MK----KGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTV-- 328 (595)
Q Consensus 257 t~~t~~li~~~~l~~--mk----~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvil-- 328 (595)
+..+++.+.+.. || ++.+++|++ +|.+.+++++++||+++
T Consensus 238 ---~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d 285 (404)
T 1gpj_A 238 ---PHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRT 285 (404)
T ss_dssp ---SSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEE
T ss_pred ---CCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEe
Confidence 456677777776 42 556777665 36555789999999999
Q ss_pred cCCCCCCcHHHHH----------HHHHHHHHHHHHHHcCC
Q 046427 329 TPHLGASTTEAQE----------GVAIEIAEAVIGALKGE 358 (595)
Q Consensus 329 TPHi~~~t~ea~~----------~~~~~~~~~l~~~l~g~ 358 (595)
|||+++.+.+++. .+..+.++++..|+.+.
T Consensus 286 ~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~ 325 (404)
T 1gpj_A 286 IDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKL 325 (404)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999888765 45556677777787654
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=160.96 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=114.4
Q ss_pred ccccccccC-hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCC
Q 046427 123 AGVGIDNVD-LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG 201 (595)
Q Consensus 123 ~g~G~d~iD-~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG 201 (595)
.++|+-.+- ....-+..++|.|+.+..+.+--+...+.--++...+.+ ..+..+.||+++|+|+|
T Consensus 164 TttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi~r--------------at~~~L~GktV~ViG~G 229 (435)
T 3gvp_A 164 SVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKR--------------TTDMMFGGKQVVVCGYG 229 (435)
T ss_dssp CHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHH--------------HHCCCCTTCEEEEECCS
T ss_pred cchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhhhHHHHHHHHHH--------------hhCceecCCEEEEEeeC
Confidence 456665542 233446789999998876665544322222222111111 13567999999999999
Q ss_pred hHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEe
Q 046427 202 KVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 202 ~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
.||+.+|+++++||++|+++|+++ ....+...|++..++++++++||+|++| +.|.++|+++.|+.||+|++|||
T Consensus 230 ~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~MK~gailIN 305 (435)
T 3gvp_A 230 EVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITC----TGNKNVVTREHLDRMKNSCIVCN 305 (435)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHSCTTEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEEC----CCCcccCCHHHHHhcCCCcEEEE
Confidence 999999999999999999999876 2344667788888999999999999995 36889999999999999999999
Q ss_pred ccCCch-hcHHHH
Q 046427 281 VARGGV-VDEEAL 292 (595)
Q Consensus 281 ~arg~~-vd~~aL 292 (595)
+|||.. +|.++|
T Consensus 306 vgrg~~EId~~~L 318 (435)
T 3gvp_A 306 MGHSNTEIDVASL 318 (435)
T ss_dssp CSSTTTTBTGGGG
T ss_pred ecCCCccCCHHHH
Confidence 999988 566665
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-17 Score=172.03 Aligned_cols=247 Identities=12% Similarity=0.050 Sum_probs=171.2
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcc-cCHHHhccc----cCEEEEeCCCChhcccccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGL-VSFEEAIST----ADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~----aD~V~l~~Plt~~t~~li~ 265 (595)
-++|||||+|.||+++|+.++..|++|++||++. ..+.+.+.|+.. .++++++++ ||+|++|+|. ..+..++.
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~ 86 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLD 86 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHH
Confidence 3579999999999999999999999999999986 345567788754 478888775 6999999994 45676663
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCC---CCCCCcccccCCcEEEcCCCCCCcHHHHHH
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE---PPAKDSKLVLHENVTVTPHLGASTTEAQEG 342 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~E---P~~~~~~L~~~~nvilTPHi~~~t~ea~~~ 342 (595)
.+..++++++|+|++..+....+++.+.+...++.+. -=+++.| |..++..||+..++++||+-+.. .+....
T Consensus 87 --~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~~-HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~-~e~~~~ 162 (341)
T 3ktd_A 87 --AVHTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVGS-HPMAGTANSGWSASMDGLFKRAVWVVTFDQLFD-GTDINS 162 (341)
T ss_dssp --HHHHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEECE-EECCSCC-CCGGGCCSSTTTTCEEEECCGGGTS-SCCCCH
T ss_pred --HHHccCCCCEEEEcCCCChHHHHHHHHhCCCCcEecC-CccccccccchhhhhhHHhcCCeEEEEeCCCCC-hhhhcc
Confidence 3444699999999997765444555554432222221 1133333 22356689999999999974332 120000
Q ss_pred HHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHH------HHHHHhcCCCCceEEEEEEeecCCC
Q 046427 343 VAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGG------LAVQLVAGGSGVKSVKVSYASARGP 414 (595)
Q Consensus 343 ~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~------l~~qL~~g~~~~k~v~i~~~Gs~a~ 414 (595)
-+....+.+.++++.-+.......+..|+..+..++ ||+.....+.. .+.+|+++ +|+++++.+.+++.
T Consensus 163 ~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~aL~~~~~~~~~~~~~laa~--gfrd~tRia~s~p~- 239 (341)
T 3ktd_A 163 TWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAETLAIVGDNGGALSLSLAAG--SYRDSTRVAGTDPG- 239 (341)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHHCCH--HHHHHTGGGGSCHH-
T ss_pred chHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHccc--cHHHHHHHhcCCHH-
Confidence 112244566666666555566667888888888888 88755544332 34467777 89999999999998
Q ss_pred CCcccccchHHHHHhhcccccccccccccHHH
Q 046427 415 DDLDTRLLRAMITKGIIEPISSVFVNLVNADF 446 (595)
Q Consensus 415 ~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~ 446 (595)
+|.+....|+..+...|+.+.++...++++++
T Consensus 240 lw~di~~~N~~~~~~~l~~~~~~L~~l~~~l~ 271 (341)
T 3ktd_A 240 LVRAMCESNAGPLVKALDEALAILHEAREGLT 271 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997777777776665455555554
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-15 Score=150.08 Aligned_cols=219 Identities=15% Similarity=0.128 Sum_probs=142.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCC-cHHHHHHcCCc---ccCHHHhcc-ccCEEEEeCCCChhcccccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYA-QADRARATGVG---LVSFEEAIS-TADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~~~~a~~~g~~---~~~l~ell~-~aD~V~l~~Plt~~t~~li~ 265 (595)
++|||||+|.||+.+|+.++..|+ +|++||++. ..+.+.+.|+. ..+++++++ +||+|++|+|.. .+..++.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~ 80 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK 80 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence 589999999999999999999998 999999976 33445566764 237889999 999999999954 5666664
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCC---CCCCCcccccCCcEEEcCCCCCCcHHHHHH
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE---PPAKDSKLVLHENVTVTPHLGASTTEAQEG 342 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~E---P~~~~~~L~~~~nvilTPHi~~~t~ea~~~ 342 (595)
+....++++++|+|+++++....+.+.+.+.++.+ + +.-++..| |..+.+.|+...+++++||.++. .+.
T Consensus 81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v-~-~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~-~~~--- 153 (281)
T 2g5c_A 81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFV-G-GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KKR--- 153 (281)
T ss_dssp -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEE-C-EEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC-HHH---
T ss_pred -HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccce-e-eccccCCccCChhhhhhHHhCCCCEEEecCCCCC-HHH---
Confidence 34566899999999999887667778888876422 1 12234333 33345678888889999997665 222
Q ss_pred HHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chh---HHHHHHHH------HHHHHhcCCCCceEEEEEEeec
Q 046427 343 VAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFV---TLAEKLGG------LAVQLVAGGSGVKSVKVSYASA 411 (595)
Q Consensus 343 ~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~---~la~rlG~------l~~qL~~g~~~~k~v~i~~~Gs 411 (595)
.+.+.++++.-.....+..+..++..+.... |+. .+.+.++. .+..|+.+ ++++++....++
T Consensus 154 -----~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~r~~~~~ 226 (281)
T 2g5c_A 154 -----LKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGG--GFKDFTRIAKSD 226 (281)
T ss_dssp -----HHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGCCTT--TGGGC---CCSC
T ss_pred -----HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhhccc--cHHHHhHHhcCC
Confidence 2344455544443333444444444444443 443 23333332 23344555 788777777777
Q ss_pred CCCCCcccccchHHHH
Q 046427 412 RGPDDLDTRLLRAMIT 427 (595)
Q Consensus 412 ~a~~~~~~~~~~~a~l 427 (595)
+. +|.+...++...+
T Consensus 227 p~-~~~~~~~sn~~~~ 241 (281)
T 2g5c_A 227 PI-MWRDIFLENKENV 241 (281)
T ss_dssp HH-HHHHHHHHTHHHH
T ss_pred HH-HHHHHHHHCHHHH
Confidence 76 7777766666533
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.38 E-value=7.1e-14 Score=142.94 Aligned_cols=227 Identities=18% Similarity=0.144 Sum_probs=139.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--CCEEEEECCCCc-HHHHHHcCCc---ccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--GMNVIAHDPYAQ-ADRARATGVG---LVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~-~~~a~~~g~~---~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
++|||||+|.||+.+|+.+... |++|++||++.. .+.+.+.|+. ..++++++++||+|++|+|.. ....++.
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~- 84 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIK-KTIDFIK- 84 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHH-HHHHHHH-
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHH-HHHHHHH-
Confidence 5899999999999999999865 789999998763 3444456652 247888999999999999954 3455553
Q ss_pred HHHhc-CCCceEEEeccCCchhcHHHHHHHHhc-C-CeeE----EEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHH
Q 046427 267 EAFFK-MKKGVRIVNVARGGVVDEEALVRALDS-G-IISQ----AALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEA 339 (595)
Q Consensus 267 ~~l~~-mk~gailiN~arg~~vd~~aL~~aL~~-g-~i~g----a~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea 339 (595)
+.... ++++++++|++++.....+.+.+.+.+ + ++.+ ++.++. .|..+...|+..++++++||.++.. +
T Consensus 85 ~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~--g~~~a~~~l~~g~~~~~~~~~~~~~-~- 160 (290)
T 3b1f_A 85 ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKS--GAVAANVNLFENAYYIFSPSCLTKP-N- 160 (290)
T ss_dssp HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----C--CTTSCCTTTTTTSEEEEEECTTCCT-T-
T ss_pred HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcc--hHHHhhHHHhCCCeEEEecCCCCCH-H-
Confidence 34556 899999999998877667788888775 2 2222 222322 2334456788888899999976542 2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc---chh--HHHHHH---H---HHHHHHhcCCCCceEEEEEE
Q 046427 340 QEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA---PFV--TLAEKL---G---GLAVQLVAGGSGVKSVKVSY 408 (595)
Q Consensus 340 ~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~---p~~--~la~rl---G---~l~~qL~~g~~~~k~v~i~~ 408 (595)
..+.+.++++.-.....+..+..++..+..++ |.. .+.+.+ | ..+.+|+++ .+++++...
T Consensus 161 -------~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~s~~~~~~a~~~~~~~~~~g~~~~~~~~la~~--~~~~~~rla 231 (290)
T 3b1f_A 161 -------TIPALQDLLSGLHARYVEIDAAEHDCVTSQISHFPHIIASSLMKQAGDFSESHEMTKHFAAG--GFRDMTRIA 231 (290)
T ss_dssp -------HHHHHHHHTGGGCCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCTHHHHHCCH--HHHHTTGGG
T ss_pred -------HHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhHHhhccc--cHHhhhhhh
Confidence 23456666665444333333333333322222 322 122222 2 233445554 566544444
Q ss_pred eecCCCCCcccccchHHHHHhhccccc
Q 046427 409 ASARGPDDLDTRLLRAMITKGIIEPIS 435 (595)
Q Consensus 409 ~Gs~a~~~~~~~~~~~a~l~GlL~~~~ 435 (595)
.+++. +|.+...++..-+.-.|+.+.
T Consensus 232 ~~~p~-~~~~~~~~n~~~~~~~l~~~~ 257 (290)
T 3b1f_A 232 ESEPG-MWTSILLTNQEAVLDRIENFK 257 (290)
T ss_dssp GSCHH-HHHHHHHHSHHHHHHHHHHHH
T ss_pred cCCHH-HHHHHHHHCHHHHHHHHHHHH
Confidence 55565 666666666654443343333
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-13 Score=142.69 Aligned_cols=227 Identities=12% Similarity=0.077 Sum_probs=135.5
Q ss_pred HHHHHHHcCcccccccceeeecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccC
Q 046427 170 QADASVKAGKWQRNKYVGVSLVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTAD 248 (595)
Q Consensus 170 ~~~~~~~~g~W~~~~~~g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD 248 (595)
.+..+++...|.... ...++||||| +|.||+++|+.++..|++|.+||++.. .++.+++++||
T Consensus 4 ~~~~~~~~~~~~~~~-----~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-----------~~~~~~~~~aD 67 (298)
T 2pv7_A 4 ESYANENQFGFKTIN-----SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-----------AVAESILANAD 67 (298)
T ss_dssp ---------CCCCSC-----TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-----------GGHHHHHTTCS
T ss_pred hHHhhhhccCccccC-----CCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-----------cCHHHHhcCCC
Confidence 445566677786422 1356899999 999999999999999999999998653 14678899999
Q ss_pred EEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEE
Q 046427 249 FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTV 328 (595)
Q Consensus 249 ~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvil 328 (595)
+|++|+|.. .+..++. +....++++++|+|+++.+....+++.+.+. .++.+. -=.++. ..+++...++++
T Consensus 68 vVilavp~~-~~~~vl~-~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~-~~~v~~-hP~~g~-----~~~~~~g~~~~l 138 (298)
T 2pv7_A 68 VVIVSVPIN-LTLETIE-RLKPYLTENMLLADLTSVKREPLAKMLEVHT-GAVLGL-HPMFGA-----DIASMAKQVVVR 138 (298)
T ss_dssp EEEECSCGG-GHHHHHH-HHGGGCCTTSEEEECCSCCHHHHHHHHHHCS-SEEEEE-EECSCT-----TCSCCTTCEEEE
T ss_pred EEEEeCCHH-HHHHHHH-HHHhhcCCCcEEEECCCCCcHHHHHHHHhcC-CCEEee-CCCCCC-----CchhhcCCeEEE
Confidence 999999954 4777764 3455689999999999877655555555542 222111 011222 235777778999
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chh---HHHHHHH------HHHHHHhcC
Q 046427 329 TPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFV---TLAEKLG------GLAVQLVAG 397 (595)
Q Consensus 329 TPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~---~la~rlG------~l~~qL~~g 397 (595)
|||- +.+. .+.+.++++.-+....+..+..++..+..++ |++ .+++.+. ..+.+|+++
T Consensus 139 ~~~~---~~~~--------~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~~~la~~ 207 (298)
T 2pv7_A 139 CDGR---FPER--------YEWLLEQIQIWGAKIYQTNATEHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSP 207 (298)
T ss_dssp EEEE---CGGG--------THHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCH
T ss_pred ecCC---CHHH--------HHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcCH
Confidence 9973 2222 2344455544443334444555565665555 654 2333332 234556655
Q ss_pred CCCceE----EEEEEeecCCCCCcccccchHHHHHhhcccccc
Q 046427 398 GSGVKS----VKVSYASARGPDDLDTRLLRAMITKGIIEPISS 436 (595)
Q Consensus 398 ~~~~k~----v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~ 436 (595)
.++. ++..+.+++. +|.+...++...+. .|..+..
T Consensus 208 --~f~~~~~~~~ria~~~p~-~~~di~~sn~~~~~-~l~~~~~ 246 (298)
T 2pv7_A 208 --IYRLELAMIGRLFAQDAE-LYADIIMDKSENLA-VIETLKQ 246 (298)
T ss_dssp --HHHHHHHHHHHHHTSCHH-HHHHHHC----CHH-HHHHHHH
T ss_pred --HHHHHHHHHHHHhcCCHH-HHHHHHHHCHHHHH-HHHHHHH
Confidence 6765 5555566676 77777666666555 4544433
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.6e-12 Score=130.27 Aligned_cols=114 Identities=19% Similarity=0.273 Sum_probs=97.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccH--HH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFND--EA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~--~~ 268 (595)
|+|||||+|.||+.+|++|...|++|.+||++.. .+...+.|.... ++.|++++||+|++|+|..+..+.++.. ..
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~ 83 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 83 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence 5899999999999999999999999999999873 455567787665 8999999999999999988888877743 36
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEec
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDV 308 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv 308 (595)
+..+++|.++||++....-+...+.+.+++..+ ..+|.
T Consensus 84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~--~~lDa 121 (300)
T 3obb_A 84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLDA 121 (300)
T ss_dssp TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTC--EEEEC
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC--EEEec
Confidence 778999999999999999999999999998877 45663
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.7e-12 Score=128.96 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=95.0
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
.++..++|||||+|.||+.+|+++...|++|++||++.. .+...+.|+... ++++++++||+|++|+|....++.++.
T Consensus 5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~ 84 (306)
T 3l6d_A 5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG 84 (306)
T ss_dssp CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence 356678999999999999999999999999999999763 344555677654 899999999999999997666787775
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.+.+..+++|.++||+++....+.+.+.+.+.+..+
T Consensus 85 ~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~ 120 (306)
T 3l6d_A 85 MPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGG 120 (306)
T ss_dssp STTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTC
T ss_pred ccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 334566789999999999999889999988877555
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.4e-12 Score=129.87 Aligned_cols=130 Identities=17% Similarity=0.146 Sum_probs=93.5
Q ss_pred HHHHHcCcccccccc-----eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhc
Q 046427 172 DASVKAGKWQRNKYV-----GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAI 244 (595)
Q Consensus 172 ~~~~~~g~W~~~~~~-----g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell 244 (595)
++.++...|..+.+. ......++|||||+|.||+.+|+.+...|++|.+||++.. .+...+.|+... ++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~ 85 (320)
T 4dll_A 6 HHSSGVDLGTENLYFQSMTVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAA 85 (320)
T ss_dssp -----------------------CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHH
T ss_pred cccccccccccccceechhhccccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHH
Confidence 345556666544221 1234567999999999999999999999999999999863 344455577654 899999
Q ss_pred cccCEEEEeCCCChhccccccH-HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 245 STADFISLHMPLTPATSKMFND-EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 245 ~~aD~V~l~~Plt~~t~~li~~-~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
++||+|++|+|....++.++.. ..+..++++.++||++++...+.+.+.+.+.+..+
T Consensus 86 ~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~ 143 (320)
T 4dll_A 86 RDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGI 143 (320)
T ss_dssp TTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999976667766642 45667999999999999999888899888887655
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.7e-12 Score=128.28 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=93.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
++|||||+|.||..+|++|...|++|++||++.. .+...+.|...+ ++.|++++||+|++|+|..+..+..+....+.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~ 85 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE 85 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence 5799999999999999999999999999998763 344456677654 89999999999999999877788888888888
Q ss_pred cCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe
Q 046427 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD 307 (595)
Q Consensus 271 ~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD 307 (595)
.++++.++||++....-..+.+.+.+.+..+ ..+|
T Consensus 86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~--~~ld 120 (297)
T 4gbj_A 86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGA--HYVG 120 (297)
T ss_dssp HHCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEE
T ss_pred hcCCCeEEEECCCCChHHHHHHHHHHHhcCC--ceec
Confidence 9999999999999999889999999888776 4455
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.7e-11 Score=124.97 Aligned_cols=108 Identities=27% Similarity=0.336 Sum_probs=93.3
Q ss_pred ee-eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCHHHhcc-ccCEEEEeCCCChhcccc
Q 046427 187 GV-SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSFEEAIS-TADFISLHMPLTPATSKM 263 (595)
Q Consensus 187 g~-~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~-~aD~V~l~~Plt~~t~~l 263 (595)
|. +|.|||++|+|+|+||+.+|+++++||++|+++|++.. .+.+.+.+.+.+++++++. +||+++-| .+.++
T Consensus 169 G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~-----A~~~~ 243 (355)
T 1c1d_A 169 GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPC-----AMGGV 243 (355)
T ss_dssp TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEEC-----SCSCC
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHh-----HHHhh
Confidence 44 69999999999999999999999999999999998753 3344556777788899998 99999853 58899
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
|+.+.++.|| ..+|+|++++++.++++ .++|+++.+
T Consensus 244 I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gI 279 (355)
T 1c1d_A 244 ITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGI 279 (355)
T ss_dssp BCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTC
T ss_pred cCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCE
Confidence 9999999998 68999999999998777 588888877
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-11 Score=124.41 Aligned_cols=137 Identities=18% Similarity=0.128 Sum_probs=96.2
Q ss_pred HHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCc--------HHHHHHcCCccc-CH
Q 046427 171 ADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQ--------ADRARATGVGLV-SF 240 (595)
Q Consensus 171 ~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~--------~~~a~~~g~~~~-~l 240 (595)
++.+.+-+.|.++.++.. .-++|||||+|.||..+|+.+...| ++|++||++.. .+...+.|+ .. ++
T Consensus 5 ~~~~~~~~~~~~~~~~~~--M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~~~s~ 81 (317)
T 4ezb_A 5 HHHSSGVDLGTENLYFQS--MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-EPLDD 81 (317)
T ss_dssp ----------CCCHHHHT--SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-EEESS
T ss_pred cccccccccCcccCcccc--cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-CCCCH
Confidence 445556667877543221 2368999999999999999999999 99999998751 123345576 66 88
Q ss_pred HHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCC
Q 046427 241 EEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE 312 (595)
Q Consensus 241 ~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~E 312 (595)
++++++||+|++|+|....... + .+....++++.++||+++......+.+.+.+.+..+....--|++.+
T Consensus 82 ~e~~~~aDvVi~avp~~~~~~~-~-~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~ 151 (317)
T 4ezb_A 82 VAGIACADVVLSLVVGAATKAV-A-ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV 151 (317)
T ss_dssp GGGGGGCSEEEECCCGGGHHHH-H-HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS
T ss_pred HHHHhcCCEEEEecCCHHHHHH-H-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc
Confidence 9999999999999996654443 3 55667899999999999999888889999888765432222356643
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=118.21 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=95.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc-----------C--------------Cc-ccCHHHhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT-----------G--------------VG-LVSFEEAIS 245 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~-----------g--------------~~-~~~l~ell~ 245 (595)
++|+|||+|.||+.+|+.+...|++|++||++.. .+.+.+. | +. ..+++++++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK 84 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence 6899999999999999999999999999998763 2222221 1 12 237889999
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCCCCCCCCCcccccCC
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
+||+|++|+|.+.+.+..+-++....+++++++++.+.+- ...++.+++... ++ .+++.|. |.+..+
T Consensus 85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~--~~~~la~~~~~~~~~--ig~h~~~--------p~~~~~ 152 (283)
T 4e12_A 85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTL--LPSDLVGYTGRGDKF--LALHFAN--------HVWVNN 152 (283)
T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHHHHSCGGGE--EEEEECS--------STTTSC
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCCcce--EEEccCC--------CcccCc
Confidence 9999999999887677666666777899999999655443 456777777543 34 5566553 334567
Q ss_pred cEEEcCCCC
Q 046427 325 NVTVTPHLG 333 (595)
Q Consensus 325 nvilTPHi~ 333 (595)
.+.++||-.
T Consensus 153 lvevv~~~~ 161 (283)
T 4e12_A 153 TAEVMGTTK 161 (283)
T ss_dssp EEEEEECTT
T ss_pred eEEEEeCCC
Confidence 788999843
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.6e-12 Score=127.42 Aligned_cols=215 Identities=13% Similarity=0.100 Sum_probs=132.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCc---ccCHHHhccccCEEEEeCCCChhccccccHHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVG---LVSFEEAISTADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~---~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
++|+|||+|.||+.+|+.+...|++|++||++.. .+...+.|+. ..+++++ ++||+|++|+| ...+..++. +.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~-~~~~~~~~~-~l 77 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTP-IQLILPTLE-KL 77 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSC-HHHHHHHHH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECC-HHHHHHHHH-HH
Confidence 3799999999999999999999999999998763 3344556653 3478888 99999999999 445566653 34
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCC---CCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHH
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTE---EPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAI 345 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~---EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~ 345 (595)
...++++++|+|++..+....+.+.+.+. ++.+. .-++.. .|..+.+.++....++++|+-+.. .+
T Consensus 78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~-~~------- 146 (279)
T 2f1k_A 78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD-PE------- 146 (279)
T ss_dssp GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC-HH-------
T ss_pred HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCCCCC-HH-------
Confidence 55689999999998877666666666554 34232 233322 233334467777788999975443 33
Q ss_pred HHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHH---HHHH--------HHHHHHhcCCCCceEEEEEEeecC
Q 046427 346 EIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLA---EKLG--------GLAVQLVAGGSGVKSVKVSYASAR 412 (595)
Q Consensus 346 ~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la---~rlG--------~l~~qL~~g~~~~k~v~i~~~Gs~ 412 (595)
..+.+.++++.-..+.....+..+++....++ |+.... ..++ ..+.+|+.+ .++++.....+++
T Consensus 147 -~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~--~~~~~~r~~~~~p 223 (279)
T 2f1k_A 147 -QLACLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASS--GFRDTSRVGGGNP 223 (279)
T ss_dssp -HHHHHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCH--HHHHHHTGGGSCH
T ss_pred -HHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCC--cccchhcccCCCH
Confidence 23455666665444333444444555555444 433222 1111 133445544 4554433334555
Q ss_pred CCCCcccccchHH
Q 046427 413 GPDDLDTRLLRAM 425 (595)
Q Consensus 413 a~~~~~~~~~~~a 425 (595)
. +|.+...++..
T Consensus 224 ~-~~~~~~~s~~~ 235 (279)
T 2f1k_A 224 E-LGTMMATYNQR 235 (279)
T ss_dssp H-HHHHHHHHSHH
T ss_pred H-HHHHHHHHhHH
Confidence 5 56665555544
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-11 Score=125.39 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=93.8
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.....-++|||||+|.||..+|+.+...|++|.+||++.. .+...+.|+... ++++++++||+|++|+|....++.++
T Consensus 16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~ 95 (310)
T 3doj_A 16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVV 95 (310)
T ss_dssp --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence 3445567999999999999999999999999999999873 345566777654 79999999999999999766676666
Q ss_pred --cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 265 --NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 265 --~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
....+..+++|.++||+++......+.+.+.+.+..+
T Consensus 96 ~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~ 134 (310)
T 3doj_A 96 FDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGG 134 (310)
T ss_dssp HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 2445667999999999999998888888888876544
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-10 Score=120.04 Aligned_cols=221 Identities=16% Similarity=0.174 Sum_probs=135.7
Q ss_pred CChhHHHHhhcCC-cEEecC------CCCHhHHhhh---c---CCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccc
Q 046427 62 LGEAGLDVLKNFA-NVDCSY------NLSPEELCTK---I---SLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGID 128 (595)
Q Consensus 62 ~~~~~~~~l~~~~-~v~~~~------~~~~~el~~~---i---~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d 128 (595)
+.|+....|.+.+ +|.+.. .++.++..+. + -.+|+|+- - ...+.+.++.+.++..+|+..---.|
T Consensus 40 ltP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~adiIlk-V-k~p~~~e~~~l~~g~~l~~~lh~~~~ 117 (381)
T 3p2y_A 40 LVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWPADVVVK-V-NPPTSDEISQLKPGSVLIGFLAPRTQ 117 (381)
T ss_dssp SCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTTSSEEEC-S-SCCCHHHHTTSCTTCEEEECCCTTTC
T ss_pred CCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeecCCEEEE-e-CCCChhHHhhccCCCEEEEEeccccC
Confidence 4567777776553 565532 3456665441 1 12676552 2 23556666666667777776555444
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHH--HHHHHHHHHH--HchHHHHHHHHcCcccccccce-eeecCCEEEEEeCChH
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAE--HGIALLTAMA--RNIAQADASVKAGKWQRNKYVG-VSLVGKTLAVMGFGKV 203 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE--~~l~l~l~~~--R~i~~~~~~~~~g~W~~~~~~g-~~l~gktvGIIGlG~I 203 (595)
.=-++++.++||...---.....+-+. .++.-|-.++ +-+..+.. .-++.......+ ..+.+++|+|+|+|.|
T Consensus 118 ~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~Av~~aa~--~l~~~~~~l~~~~~~v~~~kV~ViG~G~i 195 (381)
T 3p2y_A 118 PELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKAVLLGAS--LSTRFVPMLTTAAGTVKPASALVLGVGVA 195 (381)
T ss_dssp HHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHHHHHHHH--HCSSCSSCEECSSCEECCCEEEEESCSHH
T ss_pred HHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHHHHHHHHH--HhhhhhhhhhcccCCcCCCEEEEECchHH
Confidence 434688889999885422221100000 1111111111 11111111 111111111111 2578999999999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc--------------------------CHHHhccccCEEEEeC--
Q 046427 204 GTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV--------------------------SFEEAISTADFISLHM-- 254 (595)
Q Consensus 204 G~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~--------------------------~l~ell~~aD~V~l~~-- 254 (595)
|..+|+.++++|++|++||++. ..+.+.+.|.+++ ++++++++||+|+.++
T Consensus 196 G~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~i 275 (381)
T 3p2y_A 196 GLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTALV 275 (381)
T ss_dssp HHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCC
Confidence 9999999999999999999987 3455666665432 4678999999999875
Q ss_pred CCChhccccccHHHHhcCCCceEEEecc--CCchh
Q 046427 255 PLTPATSKMFNDEAFFKMKKGVRIVNVA--RGGVV 287 (595)
Q Consensus 255 Plt~~t~~li~~~~l~~mk~gailiN~a--rg~~v 287 (595)
|.. .+..+++++.++.||+|++|||+| +|+.+
T Consensus 276 Pg~-~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~ 309 (381)
T 3p2y_A 276 PGR-PAPRLVTAAAATGMQPGSVVVDLAGETGGNC 309 (381)
T ss_dssp TTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred CCc-ccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence 532 366789999999999999999998 66553
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.6e-11 Score=122.69 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=87.3
Q ss_pred HHHHHcCcccccccc--eeeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC---cHHHHHHcCCccc-CHHHhc
Q 046427 172 DASVKAGKWQRNKYV--GVSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA---QADRARATGVGLV-SFEEAI 244 (595)
Q Consensus 172 ~~~~~~g~W~~~~~~--g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~---~~~~a~~~g~~~~-~l~ell 244 (595)
++.++.+.|.++... .....-++|||||+|.||+.+|+.|...|+ +|.+||++. ..+...+.|+... ++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~ 81 (312)
T 3qsg_A 2 HHHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVA 81 (312)
T ss_dssp -----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHH
T ss_pred CcccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHH
Confidence 456677888754211 123345799999999999999999999999 999999962 2344556787654 799999
Q ss_pred cccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 245 STADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 245 ~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
++||+|++|+|...... .+ .+....++++.+|||+++.......++.+.+.+.
T Consensus 82 ~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~ 134 (312)
T 3qsg_A 82 GECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRH 134 (312)
T ss_dssp HHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence 99999999999665443 33 4566779999999999999988888888888764
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-11 Score=122.75 Aligned_cols=108 Identities=20% Similarity=0.197 Sum_probs=92.2
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
.++|||||+|.||+.+|+.+...|++|.+||++.. .+...+.|+... +++++++ ||+|++|+|....++.++ ....
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~ 92 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA 92 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence 36899999999999999999999999999999873 455566777654 8999999 999999999766777777 5667
Q ss_pred hcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 270 FKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 270 ~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
..++++.++||+++......+.+.+.+.+..+
T Consensus 93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~ 124 (296)
T 3qha_A 93 GHAKPGTVIAIHSTISDTTAVELARDLKARDI 124 (296)
T ss_dssp TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTC
T ss_pred HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCC
Confidence 78999999999999998888889888877655
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.1e-11 Score=124.08 Aligned_cols=121 Identities=13% Similarity=0.199 Sum_probs=99.1
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhcccc---CEEEEeCCCChhccccc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTA---DFISLHMPLTPATSKMF 264 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~a---D~V~l~~Plt~~t~~li 264 (595)
+.+++|||||+|.||+.+|+.|...|++|.+||++.. .+...+.|+... ++++++++| |+|++|+|.. .+..++
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl 98 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML 98 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence 5678999999999999999999999999999999763 344555677654 899999999 9999999966 677777
Q ss_pred cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCC
Q 046427 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE 312 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~E 312 (595)
...+..+++|.+|||++++...+...+.+.+.+..+......|++.+
T Consensus 99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~ 145 (358)
T 4e21_A 99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGI 145 (358)
T ss_dssp -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGG
T ss_pred -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCH
Confidence 45677799999999999999989899999998877755555566654
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-11 Score=121.01 Aligned_cols=109 Identities=13% Similarity=0.138 Sum_probs=91.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc--HHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN--DEA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~--~~~ 268 (595)
++|||||+|.||+.+|+.+...|++|.+||++.. .+...+.|+... ++++++++||+|++|+|....++.++. ...
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 81 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV 81 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence 6899999999999999999999999999999873 455566677654 899999999999999996666776662 445
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
...+++|.++||+++....+.+.+.+.+.+..+
T Consensus 82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~ 114 (287)
T 3pef_A 82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGG 114 (287)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 667999999999999998888888888877655
|
| >2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics, L-serine dehydratase, structure initiative; 2.05A {Legionella pneumophila} SCOP: d.81.2.1 PDB: 2iqq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-11 Score=114.02 Aligned_cols=114 Identities=12% Similarity=0.009 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHHHHhcCC---CCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccc----------cccH--
Q 046427 380 FVTLAEKLGGLAVQLVAGG---SGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVN----------LVNA-- 444 (595)
Q Consensus 380 ~~~la~rlG~l~~qL~~g~---~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn----------~~nA-- 444 (595)
|-.=+.|+|+.+++++... ..++++++.++|||+ .|+++|++|+|++.|||+ +..++++ ++++
T Consensus 9 HT~Gpmraa~~f~~~l~~~~~l~~~~~v~v~LyGSla-~TgkGHgTD~Aii~GL~G-~~pd~~~~~~~~~~~~~i~~~~~ 86 (151)
T 2iaf_A 9 HTVGPMLAANAFLQLLEQKNLFDKTQRVKVELYGSLA-LTGKGHGTDKAILNGLEN-KAPETVDPASMIPRMHEILDSNL 86 (151)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCTTTCCEEEEEEEHHHH-HTCTTSSHHHHHHHHTTT-CCCC-----CHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCcEEEEEEEchHH-hhCCCccccHHHHhhhcC-CCCCccChhhhHHHHHHHHhcCc
Confidence 4445678898888888520 158999999999998 999999999999999994 4555776 4444
Q ss_pred HHHHhhCCceEE------EEEeecCCCCCCCceEEEEEeeeccccccccccCCce-EEEEE-EEeCCeeEE
Q 046427 445 DFIAKQRGLRVT------EERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGD-IRVEG-RVKDGKPHL 507 (595)
Q Consensus 445 ~~iA~e~GI~v~------f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~-~~v~G-SvgGG~i~I 507 (595)
+.+|.+++|.+. |...+.-+.|||+..+...+. ++.. +++.+ |||||.|+.
T Consensus 87 l~la~~~~i~f~~~~di~f~~~~~lp~HpN~m~~~a~~~------------~g~~l~~~~~ySIGGGfI~~ 145 (151)
T 2iaf_A 87 LNLAGKKEIPFHEATDFLFLQKELLPKHSNGMRFSAFDG------------NANLLIEQVYYSIGGGFITT 145 (151)
T ss_dssp EEETTTEEEECCHHHHEEEETTCCCSSCSSEEEEEEECT------------TSCEEEEEEEEECSSSCEEE
T ss_pred cccCCcceeEEccccceeEcCCCCCCCCCCeeEEEEEeC------------CCCEEEEEEEEEeCCceEEE
Confidence 346777877664 333332346999998877643 3333 46777 898998753
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-11 Score=124.19 Aligned_cols=176 Identities=16% Similarity=0.142 Sum_probs=124.0
Q ss_pred CCCHhHHhhhcCC----ceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCCCchHHHHH
Q 046427 81 NLSPEELCTKISL----CDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEH 156 (595)
Q Consensus 81 ~~~~~el~~~i~~----~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~ 156 (595)
..+++++.+.+.+ ++++.+. .++.++++..+ ++|.-+++...|+|.++. +.| +..|+|+..
T Consensus 37 ~~~~~~l~~~i~~l~~~~~G~~vt--~P~k~~i~~~~-~~l~~~a~~~gavn~i~~----~~g----~~~g~ntd~---- 101 (263)
T 2d5c_A 37 DTPLEALPGRLKEVRRAFRGVNLT--LPLKEAALAHL-DWVSPEAQRIGAVNTVLQ----VEG----RLFGFNTDA---- 101 (263)
T ss_dssp ECCGGGHHHHHHHHHHHCSEEEEC--TTCTTGGGGGC-SEECHHHHHHTCCCEEEE----ETT----EEEEECCHH----
T ss_pred eCCHHHHHHHHHhccccCceEEEc--ccCHHHHHHHH-HHHhHHHHHhCCCCcEEc----cCC----eEEEeCCCH----
Confidence 4466677665543 4445442 47788888887 588888999999999875 344 234566654
Q ss_pred HHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHcC
Q 046427 157 GIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARATG 234 (595)
Q Consensus 157 ~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g 234 (595)
.+++.++.| .+.++.| +++|||+|.||+.+|+.+..+|++|.+||++... ..+.+.+
T Consensus 102 -~g~~~~l~~-------------------~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~ 160 (263)
T 2d5c_A 102 -PGFLEALKA-------------------GGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG 160 (263)
T ss_dssp -HHHHHHHHH-------------------TTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT
T ss_pred -HHHHHHHHH-------------------hCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc
Confidence 355555443 1336889 9999999999999999999999999999987532 2333445
Q ss_pred CcccCHHHhccccCEEEEeCCCCh--hccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 235 VGLVSFEEAISTADFISLHMPLTP--ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 235 ~~~~~l~ell~~aD~V~l~~Plt~--~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
....+++++ +++|+|++|+|... ++...+. ...+++|.+++|++.+.. +. .+.+++++
T Consensus 161 ~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~ 220 (263)
T 2d5c_A 161 LRAVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKA 220 (263)
T ss_dssp CEECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHH
T ss_pred cchhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHH
Confidence 554578888 99999999999762 2334453 456899999999998743 33 36665554
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.2e-10 Score=117.86 Aligned_cols=222 Identities=17% Similarity=0.205 Sum_probs=131.4
Q ss_pred CChhHHHHhhcCC-cEEecC------CCCHhHHhh---------hcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccc
Q 046427 62 LGEAGLDVLKNFA-NVDCSY------NLSPEELCT---------KISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGV 125 (595)
Q Consensus 62 ~~~~~~~~l~~~~-~v~~~~------~~~~~el~~---------~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~ 125 (595)
+.|+....|.+.+ +|.+.. .++.++..+ .+.++|+|+-- . ..+.+.++.+.++-.+|+..--
T Consensus 43 ltP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkV-k-~p~~~e~~~l~~g~~l~~~lh~ 120 (405)
T 4dio_A 43 GSVESVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKV-R-RPSAQEISGYRSGAVVIAIMDP 120 (405)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEE-E-CCCTTTGGGSCTTCEEEEECCC
T ss_pred CCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHcCCEEchHHhhccCCEEEEe-C-CCChhHHhhcCCCcEEEEEecc
Confidence 3456666665443 444422 234444432 13357876632 1 2233444555566777765544
Q ss_pred cccccChhhHHhCCceEEeCCCCCchHHHHH--HHHHHHHHH--HchHHHHHHHHcCcccccccce-eeecCCEEEEEeC
Q 046427 126 GIDNVDLSAATEHGCLVVNAPTANTIAAAEH--GIALLTAMA--RNIAQADASVKAGKWQRNKYVG-VSLVGKTLAVMGF 200 (595)
Q Consensus 126 G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~--~l~l~l~~~--R~i~~~~~~~~~g~W~~~~~~g-~~l~gktvGIIGl 200 (595)
.-|.=-++++.++||...---.....+-|.- +++-|-.++ +-+..+.. .-++.......+ ..+.+.+|+|+|+
T Consensus 121 ~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~Av~~aa~--~l~~~~~~l~t~~g~v~~~kV~ViG~ 198 (405)
T 4dio_A 121 YGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQAVIDAAY--EYDRALPMMMTAAGTVPAAKIFVMGA 198 (405)
T ss_dssp TTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHHHHHHHHH--HCSSCSSCEEETTEEECCCEEEEECC
T ss_pred ccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHHHHHHHHH--HhHhhhchhhccCCCcCCCEEEEECC
Confidence 4343345888899998853222211000000 111111111 11111111 111111111111 2578999999999
Q ss_pred ChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc------------------------------cCHHHhccccCE
Q 046427 201 GKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL------------------------------VSFEEAISTADF 249 (595)
Q Consensus 201 G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~------------------------------~~l~ell~~aD~ 249 (595)
|.||..+|+.++++|++|++||++.. .+.+.+.|..+ .++++++++||+
T Consensus 199 G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDV 278 (405)
T 4dio_A 199 GVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDI 278 (405)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHHHHHTCSE
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCE
Confidence 99999999999999999999999874 35555666532 147788999999
Q ss_pred EEEeC--CCChhccccccHHHHhcCCCceEEEecc--CCchhc
Q 046427 250 ISLHM--PLTPATSKMFNDEAFFKMKKGVRIVNVA--RGGVVD 288 (595)
Q Consensus 250 V~l~~--Plt~~t~~li~~~~l~~mk~gailiN~a--rg~~vd 288 (595)
|+.++ |.. ....+++++.++.||+|++|||+| +|+.++
T Consensus 279 VI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e 320 (405)
T 4dio_A 279 VITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIE 320 (405)
T ss_dssp EEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBT
T ss_pred EEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCcc
Confidence 99875 533 367889999999999999999998 666543
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-11 Score=129.54 Aligned_cols=136 Identities=21% Similarity=0.285 Sum_probs=98.7
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
..+.+++|||||+|.||+++|+.++..|++|++||+... .+.+.+.|+...++++++++||+|++|+|... ...++.
T Consensus 12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~-~~~v~~ 90 (338)
T 1np3_A 12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEF-QGRLYK 90 (338)
T ss_dssp HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHH-HHHHHH
Confidence 358899999999999999999999999999999998763 35566778766689999999999999999544 466665
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCc---cccc---CCcEEEcCCCC
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDS---KLVL---HENVTVTPHLG 333 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~---~L~~---~~nvilTPHi~ 333 (595)
++....|+++++|++++ + +.. ....+.. +.+.|++...|..+.+ .|++ ..++++|||-.
T Consensus 91 ~~i~~~l~~~~ivi~~~--g-v~~--~~~~~~~----~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~ 155 (338)
T 1np3_A 91 EEIEPNLKKGATLAFAH--G-FSI--HYNQVVP----RADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQD 155 (338)
T ss_dssp HHTGGGCCTTCEEEESC--C-HHH--HTTSSCC----CTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEEC
T ss_pred HHHHhhCCCCCEEEEcC--C-chh--HHHhhcC----CCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCC
Confidence 35556799999999884 3 233 2222221 2233455555533332 4565 77889999854
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-10 Score=123.82 Aligned_cols=145 Identities=21% Similarity=0.255 Sum_probs=107.8
Q ss_pred ccccccccC-hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCC
Q 046427 123 AGVGIDNVD-LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG 201 (595)
Q Consensus 123 ~g~G~d~iD-~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG 201 (595)
.++|+.... +.+..+..|+|.|+.+..+.+..+...+.- +.+..+-|. ..+..+.||+++|+|+|
T Consensus 209 TttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~-----------~sl~dgi~r---~tg~~L~GKtVvVtGaG 274 (488)
T 3ond_A 209 TTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCR-----------HSLPDGLMR---ATDVMIAGKVAVVAGYG 274 (488)
T ss_dssp SHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHH-----------HHHHHHHHH---HHCCCCTTCEEEEECCS
T ss_pred ccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhcccc-----------HHHHHHHHH---HcCCcccCCEEEEECCC
Confidence 567777642 233345779999998765554333222211 112222221 23457999999999999
Q ss_pred hHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEe
Q 046427 202 KVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 202 ~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
.||+.+|++++++|++|+++|++. ....+...++...+++++++.+|+++.+. .+.++++.+.+..||++++|+|
T Consensus 275 gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~at----G~~~vl~~e~l~~mk~gaiVvN 350 (488)
T 3ond_A 275 DVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTT----GNKDIIMLDHMKKMKNNAIVCN 350 (488)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECS----SCSCSBCHHHHTTSCTTEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCC----CChhhhhHHHHHhcCCCeEEEE
Confidence 999999999999999999999876 33445667777778999999999999865 4678899999999999999999
Q ss_pred ccCCc
Q 046427 281 VARGG 285 (595)
Q Consensus 281 ~arg~ 285 (595)
++++.
T Consensus 351 aG~~~ 355 (488)
T 3ond_A 351 IGHFD 355 (488)
T ss_dssp SSSTT
T ss_pred cCCCC
Confidence 99973
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.4e-11 Score=120.82 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=90.9
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc--cCHHHhccccCEEEEeCCCChhcccccc--H
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL--VSFEEAISTADFISLHMPLTPATSKMFN--D 266 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~--~~l~ell~~aD~V~l~~Plt~~t~~li~--~ 266 (595)
.++|||||+|.||+.+|+.+...|++|.+||++.. .+...+.|... .++++++++||+|++|+|....++.++. +
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~ 86 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED 86 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence 46899999999999999999999999999999763 34455667654 4899999999999999997666666652 3
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
..+..++++.++||+++......+.+.+.+.+..+
T Consensus 87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~ 121 (303)
T 3g0o_A 87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNL 121 (303)
T ss_dssp CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 45567899999999999998888888888877554
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.6e-11 Score=120.42 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=90.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc--HHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN--DEA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~--~~~ 268 (595)
++|||||+|.||+.+|+.+...|++|.+||++.. .+...+.|+... ++++++++||+|++|+|..+.++.++. ...
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l 81 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV 81 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence 4799999999999999999999999999999873 345556677654 899999999999999997666776662 345
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+..++++.++||++++.....+.+.+.+.+..+
T Consensus 82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~ 114 (287)
T 3pdu_A 82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGG 114 (287)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 667899999999999998888888888876544
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-10 Score=115.88 Aligned_cols=165 Identities=19% Similarity=0.217 Sum_probs=115.8
Q ss_pred CCCHhHHhhhcC-----CceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCCCchHHHH
Q 046427 81 NLSPEELCTKIS-----LCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAE 155 (595)
Q Consensus 81 ~~~~~el~~~i~-----~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE 155 (595)
..+++++.+.+. +++++.+. .+..++++..+ ..+.-.++...++|.++. +.|- ..|+|+...
T Consensus 48 ~~~~~~l~~~i~~l~~~~~~G~nvt--iP~k~~i~~~l-d~l~~~A~~~gavnti~~----~~g~----~~g~nTd~~-- 114 (275)
T 2hk9_A 48 EINPEELKKAFEGFKALKVKGINVT--VPFKEEIIPLL-DYVEDTAKEIGAVNTVKF----ENGK----AYGYNTDWI-- 114 (275)
T ss_dssp ECCGGGHHHHHHHHHHHTCCEEEEC--TTSTTTTGGGC-SEECHHHHHHTCCCEEEE----ETTE----EEEECCHHH--
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEC--ccCHHHHHHHH-HHhhHHHHHhCCcceEEe----eCCE----EEeecCCHH--
Confidence 456666665543 56788774 46777788776 467777777888888764 3442 235666443
Q ss_pred HHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHc
Q 046427 156 HGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARAT 233 (595)
Q Consensus 156 ~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~ 233 (595)
+++.++.| .+.++.|++++|||.|.+|+++|+.+...|++|.+||++... ..+...
T Consensus 115 ---G~~~~l~~-------------------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~ 172 (275)
T 2hk9_A 115 ---GFLKSLKS-------------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF 172 (275)
T ss_dssp ---HHHHHHHH-------------------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS
T ss_pred ---HHHHHHHH-------------------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc
Confidence 44444433 123578899999999999999999999999999999987532 122233
Q ss_pred CCccc-CHHHhccccCEEEEeCCCCh--hccccccHHHHhcCCCceEEEeccC
Q 046427 234 GVGLV-SFEEAISTADFISLHMPLTP--ATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 234 g~~~~-~l~ell~~aD~V~l~~Plt~--~t~~li~~~~l~~mk~gailiN~ar 283 (595)
|+... ++.++++++|+|++|+|... ++...++ +..++++.+++|++.
T Consensus 173 g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 173 PLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY 222 (275)
T ss_dssp CEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS
T ss_pred CCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC
Confidence 54444 78899999999999999764 2223443 355899999999988
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-09 Score=118.28 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=94.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc---CCc---ccCHHHhcc---ccCEEEEeCCCChhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT---GVG---LVSFEEAIS---TADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~---g~~---~~~l~ell~---~aD~V~l~~Plt~~t~~ 262 (595)
++|||||+|.||+.+|+++...|++|.+||++.. .+...+. +.. ..+++++++ +||+|++|+|..+.+..
T Consensus 5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~ 84 (484)
T 4gwg_A 5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDD 84 (484)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHH
T ss_pred CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHHH
Confidence 5799999999999999999999999999999873 2333333 222 247888876 59999999998777877
Q ss_pred cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCC
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE 312 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~E 312 (595)
++ .+....|++|.+|||++++...+...+.+.+.+..+.....-|++.+
T Consensus 85 vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~ 133 (484)
T 4gwg_A 85 FI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGE 133 (484)
T ss_dssp HH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHH
T ss_pred HH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCH
Confidence 77 45677899999999999999988888888888776644444455544
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-09 Score=109.20 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=86.9
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc-------CCccc-CHHHhccccCEEEEeCCCChhc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT-------GVGLV-SFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~-------g~~~~-~l~ell~~aD~V~l~~Plt~~t 260 (595)
-+.|+|||||+|.||+.+|+.+. .|++|++||++.. .+.+.+. ++... ++++ +++||+|+.|+|...+.
T Consensus 10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v 87 (293)
T 1zej_A 10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT 87 (293)
T ss_dssp --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence 45689999999999999999999 9999999999763 3344443 44333 6766 89999999999988877
Q ss_pred cccccHHHHhcCCCceEE-EeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCC
Q 046427 261 SKMFNDEAFFKMKKGVRI-VNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHL 332 (595)
Q Consensus 261 ~~li~~~~l~~mk~gail-iN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi 332 (595)
+..+-.+ ++.+ +++++ +|+|.-.+ ..+.+++.. .....++.-|. |.+ ..+-+.++|+-
T Consensus 88 k~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~~-~~r~~G~Hf~~--Pv~------~~~lveiv~g~ 146 (293)
T 1zej_A 88 KVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLDS-PSRFLGVHWMN--PPH------VMPLVEIVISR 146 (293)
T ss_dssp HHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSSC-GGGEEEEEECS--STT------TCCEEEEEECT
T ss_pred HHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhhc-ccceEeEEecC--ccc------cCCEEEEECCC
Confidence 6666443 5667 99888 58877544 344444432 22235666665 432 23455677753
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=111.75 Aligned_cols=109 Identities=14% Similarity=0.241 Sum_probs=87.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhcccccc--HHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFN--DEA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~--~~~ 268 (595)
++|+|||+|.||+.+|+.+...|++|.+||++.. .+...+.|+.. .+++++++++|+|++|+|....+..++. .+.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l 85 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 85 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence 4899999999999999999999999999998763 34444557654 3788999999999999996666666663 234
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
...++++.++||++.|...+.+.+.+.+.+..+
T Consensus 86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~ 118 (299)
T 1vpd_A 86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGV 118 (299)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 466899999999999987778888888876433
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.4e-10 Score=112.39 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=66.7
Q ss_pred ccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH---------------HHH-HHcCC-cccCHHH
Q 046427 180 WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA---------------DRA-RATGV-GLVSFEE 242 (595)
Q Consensus 180 W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---------------~~a-~~~g~-~~~~l~e 242 (595)
|........++.+++|||||+|.||+.+|+.|...|++|++||++... ... ...+. ...++.+
T Consensus 7 ~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 86 (245)
T 3dtt_A 7 HHHHHHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFAD 86 (245)
T ss_dssp ------------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHH
T ss_pred cccccccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHH
Confidence 333345677899999999999999999999999999999999987532 111 12232 3447899
Q ss_pred hccccCEEEEeCCCChhccccccHHH-HhcCCCceEEEecc
Q 046427 243 AISTADFISLHMPLTPATSKMFNDEA-FFKMKKGVRIVNVA 282 (595)
Q Consensus 243 ll~~aD~V~l~~Plt~~t~~li~~~~-l~~mk~gailiN~a 282 (595)
++++||+|++|+|... ....+.. . ...+ ++.++||++
T Consensus 87 ~~~~aDvVilavp~~~-~~~~~~~-i~~~~l-~g~ivi~~s 124 (245)
T 3dtt_A 87 VAAGAELVVNATEGAS-SIAALTA-AGAENL-AGKILVDIA 124 (245)
T ss_dssp HHHHCSEEEECSCGGG-HHHHHHH-HCHHHH-TTSEEEECC
T ss_pred HHhcCCEEEEccCcHH-HHHHHHH-hhhhhc-CCCEEEECC
Confidence 9999999999999654 3333322 1 2234 899999999
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-09 Score=118.57 Aligned_cols=104 Identities=21% Similarity=0.302 Sum_probs=80.5
Q ss_pred cCcccccccceeeecC-CEEEEEeCChHHHHHHHHHhcC------CCEEEEECCC-C-cHHHHHHcCCcc-----cCHHH
Q 046427 177 AGKWQRNKYVGVSLVG-KTLAVMGFGKVGTEVARRAKGL------GMNVIAHDPY-A-QADRARATGVGL-----VSFEE 242 (595)
Q Consensus 177 ~g~W~~~~~~g~~l~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~-~-~~~~a~~~g~~~-----~~l~e 242 (595)
.|+|... .....|+| |+|||||+|.||+++|+.|+.. |++|++.++. . ..+.+.+.|+.. .++++
T Consensus 39 ~~~w~~~-~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aE 117 (525)
T 3fr7_A 39 GGRNLFP-LLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWE 117 (525)
T ss_dssp CCGGGGG-GHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHH
T ss_pred ccccccc-cChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHH
Confidence 3556542 12356999 9999999999999999999987 9998865443 3 456677888874 58999
Q ss_pred hccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCC
Q 046427 243 AISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 243 ll~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
++++||+|++++|.... ..++. +.+..||+|++| -.+-|
T Consensus 118 Aa~~ADVVILaVP~~~~-~eVl~-eI~p~LK~GaIL-s~AaG 156 (525)
T 3fr7_A 118 TVSGSDLVLLLISDAAQ-ADNYE-KIFSHMKPNSIL-GLSHG 156 (525)
T ss_dssp HHHHCSEEEECSCHHHH-HHHHH-HHHHHSCTTCEE-EESSS
T ss_pred HHhcCCEEEECCChHHH-HHHHH-HHHHhcCCCCeE-EEeCC
Confidence 99999999999997654 35665 678889999995 45555
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-09 Score=108.70 Aligned_cols=106 Identities=16% Similarity=0.170 Sum_probs=84.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFK 271 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~ 271 (595)
++|||||+|.||+.+|+.+.. |++|.+||++.. .+...+.|+...+++++++++|+|++|+|....+..++ ++....
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~~ 79 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPY 79 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTT
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHH-HHHHhh
Confidence 479999999999999999999 999999998763 33344446544447788899999999999655566665 444567
Q ss_pred CCCceEEEeccCCchhcHHHHHHHHhcCC
Q 046427 272 MKKGVRIVNVARGGVVDEEALVRALDSGI 300 (595)
Q Consensus 272 mk~gailiN~arg~~vd~~aL~~aL~~g~ 300 (595)
++++.++||++.+...+.+.+.+.+.+..
T Consensus 80 l~~~~~vv~~s~~~~~~~~~l~~~~~~~g 108 (289)
T 2cvz_A 80 LREGTYWVDATSGEPEASRRLAERLREKG 108 (289)
T ss_dssp CCTTEEEEECSCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence 89999999999988878888888887643
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-09 Score=110.34 Aligned_cols=106 Identities=18% Similarity=0.307 Sum_probs=84.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccH--HH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFND--EA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~--~~ 268 (595)
++|||||+|.||+.+|+.+...|++|.+||++.. .+...+.|+... ++++++++||+|++|+|....++.++.. ..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~ 80 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI 80 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence 3699999999999999999999999999999763 344455576543 7899999999999999976667766643 23
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+..++++.++|+++.....+.+.+.+.+.+
T Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~ 110 (296)
T 2gf2_A 81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEK 110 (296)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 456899999999887777666777776654
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-09 Score=110.11 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=86.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc--HHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN--DEA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~--~~~ 268 (595)
++|||||+|.||+.+|+.+...|++|.+||++.. .+...+.|+... +++++++++|+|++|+|....++.++. .+.
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 84 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV 84 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence 5899999999999999999999999999998763 333444466543 789999999999999997666777764 244
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
...++++.+||++++|...+.+.+.+.+.+.
T Consensus 85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~ 115 (301)
T 3cky_A 85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEK 115 (301)
T ss_dssp HHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 5678999999999998876778888888763
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-09 Score=110.03 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=85.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccH--HH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFND--EA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~--~~ 268 (595)
++|||||+|.||+.+|+.+...|++|.+|| +. ..+...+.|+.. .++++++++||+|++|+|....+..++.. ..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 82 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC 82 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence 489999999999999999999999999999 65 334444457654 37899999999999999966556666542 34
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
...++++.+||+++.+...+.+.+.+.+.+.
T Consensus 83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 113 (295)
T 1yb4_A 83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEM 113 (295)
T ss_dssp TTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 4568999999999999877788888888764
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-10 Score=112.03 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=76.1
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
+.+++|||||+|.||+.+|+.+..+|++|.+||++...+.....|+...++++++++||+|++|+|.. .+..++ .+
T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~-~~~~v~---~l 92 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHRE-HYDFLA---EL 92 (201)
Confidence 67789999999999999999999999999999987542223334555557889999999999999964 577776 24
Q ss_pred hcCCCceEEEeccCCchh
Q 046427 270 FKMKKGVRIVNVARGGVV 287 (595)
Q Consensus 270 ~~mk~gailiN~arg~~v 287 (595)
..++++.+|||+++|-..
T Consensus 93 ~~~~~~~ivI~~~~G~~~ 110 (201)
T 2yjz_A 93 ADSLKGRVLIDVSNNQKM 110 (201)
Confidence 557789999999998753
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-09 Score=115.09 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=88.7
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc----CCcc-cCHHHhccc---cCEEEEeCCCChhc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT----GVGL-VSFEEAIST---ADFISLHMPLTPAT 260 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~----g~~~-~~l~ell~~---aD~V~l~~Plt~~t 260 (595)
..-++|||||+|.||+.+|+++...|++|.+||++.. .+...+. |+.. .++++++++ ||+|++++|....+
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 92 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT 92 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence 4557899999999999999999999999999999763 2323332 5544 378898887 99999999976778
Q ss_pred cccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+.++. +....+++|.+|||++.|...+...+.+.+.+..+
T Consensus 93 ~~vl~-~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~ 132 (480)
T 2zyd_A 93 DAAID-SLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132 (480)
T ss_dssp HHHHH-HHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Confidence 88874 45677899999999999988888888888876444
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-08 Score=110.07 Aligned_cols=166 Identities=16% Similarity=0.128 Sum_probs=104.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc----cceee-ecCCEEEEEeCChHHHHHHHHHhcCCCEEE
Q 046427 145 APTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK----YVGVS-LVGKTLAVMGFGKVGTEVARRAKGLGMNVI 219 (595)
Q Consensus 145 ~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~----~~g~~-l~gktvGIIGlG~IG~~vA~~l~~~G~~V~ 219 (595)
+.|-|-..|.|.+.+.++. ++...++|.... +.... -.=++|||||+|.||..+|..+...|++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~---------a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~ 81 (460)
T 3k6j_A 11 STGENLYFQGSEVRSYLME---------AHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETF 81 (460)
T ss_dssp TTSGGGGGCBCHHHHHHHH---------TTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred ccccchhhhhHHHHHHHHh---------HHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEE
Confidence 3455555666666666665 223345676431 11111 122689999999999999999999999999
Q ss_pred EECCCCcH---------HHHHHcCC-------------c-ccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCce
Q 046427 220 AHDPYAQA---------DRARATGV-------------G-LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGV 276 (595)
Q Consensus 220 ~~d~~~~~---------~~a~~~g~-------------~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~ga 276 (595)
+||++... +...+.|. . ..+++ .+++||+|+.|+|...+.+.-+-++....+++++
T Consensus 82 l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~a 160 (460)
T 3k6j_A 82 LVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTC 160 (460)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTC
T ss_pred EEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCC
Confidence 99987541 11223332 1 12564 6899999999999877665555455666799999
Q ss_pred EEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCC
Q 046427 277 RIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPH 331 (595)
Q Consensus 277 iliN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH 331 (595)
+|+..+.+ +....+.+.+... -...+++-|. |.+ .-+| +.++|+
T Consensus 161 IlasnTSs--l~i~~ia~~~~~p-~r~iG~Hffn--Pv~-~m~L-----vEIv~g 204 (460)
T 3k6j_A 161 IFGTNTSS--LDLNEISSVLRDP-SNLVGIHFFN--PAN-VIRL-----VEIIYG 204 (460)
T ss_dssp EEEECCSS--SCHHHHHTTSSSG-GGEEEEECCS--STT-TCCE-----EEEECC
T ss_pred EEEecCCC--hhHHHHHHhccCC-cceEEEEecc--hhh-hCCE-----EEEEeC
Confidence 99644333 3445666665432 2346777776 432 2233 556665
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=6e-09 Score=107.59 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=85.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccH--HH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFND--EA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~--~~ 268 (595)
++|||||+|.||+.+|+.+...|++|.+||++.. .+...+.|+... ++++++++||+|++|+|....++.++.. ..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~ 110 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV 110 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence 6899999999999999999999999999998763 344455676543 7889999999999999966666666543 13
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
+..++++.++||++++.....+.+.+.+...
T Consensus 111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 141 (316)
T 2uyy_A 111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSR 141 (316)
T ss_dssp GGGCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 4668999999999998877777888888543
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.2e-09 Score=113.27 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=88.5
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHH-----cCCcc-cCHHHhccc---cCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARA-----TGVGL-VSFEEAIST---ADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~-----~g~~~-~~l~ell~~---aD~V~l~~Plt~~t~ 261 (595)
.++|||||+|.||+.+|+.+...|++|.+||++.. .+...+ .|+.. .+++++++. ||+|++++|....++
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 89 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD 89 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence 35899999999999999999999999999999873 333333 35543 378898877 999999999767788
Q ss_pred ccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.++ .+....+++|.+|||++.+...+...+.+.+.+..+
T Consensus 90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~ 128 (497)
T 2p4q_A 90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGI 128 (497)
T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCC
Confidence 887 445677999999999999988788888888876433
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.9e-09 Score=104.70 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=79.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc---HHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ---ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~---~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
++|||||+|.||+.+|+.+...|++|++||+... .+...+.|+. .++++++++||+|++|+|.......+ .+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~~ 77 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT-ETSEEDVYSCPVVISAVTPGVALGAA--RRAG 77 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE-ECCHHHHHTSSEEEECSCGGGHHHHH--HHHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc-CCHHHHHhcCCEEEEECCCHHHHHHH--HHHH
Confidence 3799999999999999999999999999988322 2333445776 77889999999999999965544443 3455
Q ss_pred hcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 270 FKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 270 ~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
..+++ ++||++.+...+.+.+.+.+...
T Consensus 78 ~~~~~--~vi~~s~~~~~~~~~l~~~~~~~ 105 (264)
T 1i36_A 78 RHVRG--IYVDINNISPETVRMASSLIEKG 105 (264)
T ss_dssp TTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred HhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence 66776 99999988877778888888663
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-08 Score=110.50 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=86.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc----CCcc-cCHHHhccc---cCEEEEeCCCChhcccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT----GVGL-VSFEEAIST---ADFISLHMPLTPATSKM 263 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~----g~~~-~~l~ell~~---aD~V~l~~Plt~~t~~l 263 (595)
++|||||+|.||+.+|+.+...|++|.+||++.. .+...+. |+.. .++++++++ +|+|++|+|....+..+
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v 85 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT 85 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence 5799999999999999999999999999998763 2223222 5543 378898876 99999999976677777
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+ .+....+++|.+||+++.|...+.+.+.+.+.+..+
T Consensus 86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~ 122 (474)
T 2iz1_A 86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 122 (474)
T ss_dssp H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSC
T ss_pred H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Confidence 7 345567899999999999987788888888876544
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=107.92 Aligned_cols=106 Identities=21% Similarity=0.246 Sum_probs=85.7
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHcCCcccCHHHhcc-ccCEEEEeCCCChhcccccc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARATGVGLVSFEEAIS-TADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~~l~ell~-~aD~V~l~~Plt~~t~~li~ 265 (595)
+|.||||+|+|+|+||+.+|++|.++|++|+++|++... +.+.+.+.+.++.++++. +||+++.|. +.++|+
T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a-----~~~~I~ 244 (364)
T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAVLN 244 (364)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCCBS
T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccc-----hHHHhC
Confidence 699999999999999999999999999999999987632 234445777778888887 899999874 667888
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.+.++.|+ ..+|++.+++.+.+++ ..+.|+++.+
T Consensus 245 ~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi 278 (364)
T 1leh_A 245 DFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI 278 (364)
T ss_dssp TTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred HHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence 88888884 5689999999987755 4566666655
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-08 Score=110.60 Aligned_cols=117 Identities=21% Similarity=0.155 Sum_probs=89.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHH-----cCCcc-cCHHHhcc---ccCEEEEeCCCChhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARA-----TGVGL-VSFEEAIS---TADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~-----~g~~~-~~l~ell~---~aD~V~l~~Plt~~t~~ 262 (595)
++|||||+|.||+.+|..+...|++|.+||++.. .+...+ .|+.. .+++++++ ++|+|++|+|....+..
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~ 82 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence 4799999999999999999999999999999763 233333 45543 37888874 89999999997667777
Q ss_pred cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCC
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFT 310 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~ 310 (595)
++. +....+++|.+||+++.|...+...+.+.+.+..+...+.-++.
T Consensus 83 vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g 129 (482)
T 2pgd_A 83 FIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSG 129 (482)
T ss_dssp HHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred HHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCC
Confidence 774 45567899999999999988777778888876444333333443
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-08 Score=102.33 Aligned_cols=92 Identities=22% Similarity=0.374 Sum_probs=74.0
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHh
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
++|||||+ |.||+.+|+.+...|++|++||++.. .+...+.|+...++.+++++||+|++|+|.. .+..++ .+...
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~-~~~~v~-~~l~~ 89 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDN-IIEKVA-EDIVP 89 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHH-HHHHHH-HHHGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCch-HHHHHH-HHHHH
Confidence 58999999 99999999999999999999998753 3344456765557888999999999999954 356655 34445
Q ss_pred cCCCceEEEeccCCch
Q 046427 271 KMKKGVRIVNVARGGV 286 (595)
Q Consensus 271 ~mk~gailiN~arg~~ 286 (595)
.+++++++|+++.|..
T Consensus 90 ~l~~~~ivv~~s~~~~ 105 (286)
T 3c24_A 90 RVRPGTIVLILDAAAP 105 (286)
T ss_dssp GSCTTCEEEESCSHHH
T ss_pred hCCCCCEEEECCCCch
Confidence 6899999999888763
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-08 Score=102.16 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=76.0
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCCc-HHHH-HHcCCcc-cCHHHhccccCEEEEeCCCChhccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYAQ-ADRA-RATGVGL-VSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~-~~~a-~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
..++.+++|||||+|.||+.+|+.+...|++ |.+||++.. .+.. ...|+.. .++++++++||+|++|+|.. ....
T Consensus 5 ~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~ 83 (266)
T 3d1l_A 5 KRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAE 83 (266)
T ss_dssp --CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHH
T ss_pred hcCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHH
Confidence 3456678999999999999999999988998 899998753 2222 3336654 37889999999999999954 4455
Q ss_pred cccHHHHhcCCCceEEEeccCCchhc
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVD 288 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd 288 (595)
++. +....+++++++|+++.|...+
T Consensus 84 v~~-~l~~~~~~~~ivv~~s~~~~~~ 108 (266)
T 3d1l_A 84 LLQ-GIVEGKREEALMVHTAGSIPMN 108 (266)
T ss_dssp HHH-HHHTTCCTTCEEEECCTTSCGG
T ss_pred HHH-HHHhhcCCCcEEEECCCCCchH
Confidence 553 3445688999999999987644
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.9e-08 Score=107.77 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=88.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHH-HcC-------Ccc-cCHHHhccc---cCEEEEeCCCChh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRAR-ATG-------VGL-VSFEEAIST---ADFISLHMPLTPA 259 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~-~~g-------~~~-~~l~ell~~---aD~V~l~~Plt~~ 259 (595)
++|||||+|.||+.+|+.+...|++|.+||++.. .+... ..| +.. .+++++++. +|+|++|+|....
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 3699999999999999999999999999998753 22222 224 332 378888874 9999999997666
Q ss_pred ccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCC
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFT 310 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~ 310 (595)
+..++ ++....+++|.+||+++.|...+.+.+.+.+.+..+.....-|+.
T Consensus 82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~g 131 (478)
T 1pgj_A 82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG 131 (478)
T ss_dssp HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccC
Confidence 77777 345567899999999999987788888888876544333333443
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-08 Score=98.13 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=72.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
.+++|+|||+|.||+.+|+.+...|++|.+||++.. .+...+.|+...+++++++++|+|++|+|. .....++. +
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~-~~~~~v~~---l 102 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFR-EHYSSLCS---L 102 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCG-GGSGGGGG---G
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCCh-HHHHHHHH---H
Confidence 457899999999999999999999999999998753 222333466555888999999999999994 44556653 3
Q ss_pred hcCCCceEEEeccCCchhc
Q 046427 270 FKMKKGVRIVNVARGGVVD 288 (595)
Q Consensus 270 ~~mk~gailiN~arg~~vd 288 (595)
..+.+++++|++++|.-.+
T Consensus 103 ~~~~~~~~vv~~s~g~~~~ 121 (215)
T 2vns_A 103 SDQLAGKILVDVSNPTEQE 121 (215)
T ss_dssp HHHHTTCEEEECCCCCHHH
T ss_pred HHhcCCCEEEEeCCCcccc
Confidence 3334799999999987543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-08 Score=107.88 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=91.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--CCEEEEECCCCcH-HHH---------------HH----cCCcc-cCHHHhccccCE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--GMNVIAHDPYAQA-DRA---------------RA----TGVGL-VSFEEAISTADF 249 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~-~~a---------------~~----~g~~~-~~l~ell~~aD~ 249 (595)
++|+|||+|.||..+|..+... |++|++||++... +.. .. .++.. .++++.+++||+
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv 85 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL 85 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence 5899999999999999999877 8999999987532 211 01 13333 367888999999
Q ss_pred EEEeCCCChhcccc-----------c--cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe---cCCCCC
Q 046427 250 ISLHMPLTPATSKM-----------F--NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD---VFTEEP 313 (595)
Q Consensus 250 V~l~~Plt~~t~~l-----------i--~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD---v~~~EP 313 (595)
|++|+|......+. . -+.....|++++++||+++..+-..+.+.+.+.+... .++| .+.+|+
T Consensus 86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~--~~~d~~V~~~Pe~ 163 (467)
T 2q3e_A 86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTK--PNLNLQVLSNPEF 163 (467)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCC--TTCEEEEEECCCC
T ss_pred EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCC--CCCCeEEEeCHHH
Confidence 99999954433221 1 1234456899999999999887777778888876532 1123 356665
Q ss_pred CCCCc---ccccCCcEEE
Q 046427 314 PAKDS---KLVLHENVTV 328 (595)
Q Consensus 314 ~~~~~---~L~~~~nvil 328 (595)
..... .++..+++++
T Consensus 164 ~~~G~~~~d~~~~~rivv 181 (467)
T 2q3e_A 164 LAEGTAIKDLKNPDRVLI 181 (467)
T ss_dssp CCTTSHHHHHHSCSCEEE
T ss_pred hhcccchhhccCCCEEEE
Confidence 53333 2455566654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.65 E-value=5.8e-07 Score=94.91 Aligned_cols=181 Identities=15% Similarity=0.116 Sum_probs=114.8
Q ss_pred CceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeC---CCCC-----chHHHHHH--HHHHH
Q 046427 93 LCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNA---PTAN-----TIAAAEHG--IALLT 162 (595)
Q Consensus 93 ~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~---p~~~-----~~~vAE~~--l~l~l 162 (595)
++|+|+ ....+...+.... .+++.++.-....++.-.++++.++|+...|. |.-. -.++++.+ ++.++
T Consensus 66 ~ad~i~-~vksP~~~~~~~~-~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~ 143 (361)
T 1pjc_A 66 SREMVV-KVKEPLPAEYDLM-QKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQF 143 (361)
T ss_dssp TSSEEE-CSSCCCGGGGGGC-CTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHH
T ss_pred cCCeEE-EECCCCHHHHHhh-cCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHH
Confidence 689865 3444554443332 34676666666666665577888899988754 4321 12333333 24444
Q ss_pred HHHHchHHHHHHHHcCc--ccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc--
Q 046427 163 AMARNIAQADASVKAGK--WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL-- 237 (595)
Q Consensus 163 ~~~R~i~~~~~~~~~g~--W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-- 237 (595)
... ++... ..|+ +.. .. ..+.++++.|+|.|.+|+.+++.++.+|++|+++|++.. .+.+.+.+...
T Consensus 144 gA~-nt~~~----~~g~G~~l~-~l--~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~ 215 (361)
T 1pjc_A 144 GAR-FLERQ----QGGRGVLLG-GV--PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVE 215 (361)
T ss_dssp HHH-HTSGG----GTSCCCCTT-CB--TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSE
T ss_pred HHH-HHhhc----cCCCceecc-CC--CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeE
Confidence 332 21111 1121 111 01 137789999999999999999999999999999998763 23333333211
Q ss_pred ------cCHHHhccccCEEEEeCCCCh-hccccccHHHHhcCCCceEEEeccC
Q 046427 238 ------VSFEEAISTADFISLHMPLTP-ATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 238 ------~~l~ell~~aD~V~l~~Plt~-~t~~li~~~~l~~mk~gailiN~ar 283 (595)
.++.+.++.+|+|+.|++... .+..++.++.++.||++.+++|++-
T Consensus 216 ~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 216 LLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp EEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred eeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence 245677789999999997533 2345667888999999999999983
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-07 Score=92.66 Aligned_cols=103 Identities=19% Similarity=0.265 Sum_probs=75.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC----EEEEECCCCc-HHHH-HHcCCccc-CHHHhccccCEEEEeCCCChhcccccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM----NVIAHDPYAQ-ADRA-RATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~-~~~a-~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
++|||||+|+||+.+|+.+...|+ +|.+||++.. .+.. .+.|+... ++.+++++||+|++|+|. .....++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~- 80 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII- 80 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence 589999999999999999999998 9999999763 2333 34577654 789999999999999973 4455555
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
++....++++.++|.+..|- ..+.+.+.+..+
T Consensus 81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~~ 112 (247)
T 3gt0_A 81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNKK 112 (247)
T ss_dssp ---CCSSCTTCEEEECSCCS--CHHHHHHHHCSC
T ss_pred HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCCC
Confidence 33445678898888665443 345666666543
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.1e-08 Score=95.06 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=63.1
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
..++.+++|+|||+|.||+.+|+.+...|++|.+||++.. .+++||+|++|+| .+.+..++..
T Consensus 14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~----------------~~~~aD~vi~av~-~~~~~~v~~~ 76 (209)
T 2raf_A 14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ----------------ATTLGEIVIMAVP-YPALAALAKQ 76 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC----------------CSSCCSEEEECSC-HHHHHHHHHH
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH----------------HhccCCEEEEcCC-cHHHHHHHHH
Confidence 3468899999999999999999999999999999998643 5678999999999 6667766643
Q ss_pred HHHhcCCCceEEEeccCCch
Q 046427 267 EAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~ 286 (595)
....++ ++++|++++|--
T Consensus 77 -l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 77 -YATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp -THHHHT-TSEEEECCCCBC
T ss_pred -HHHhcC-CCEEEEECCCCC
Confidence 334577 999999998654
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-07 Score=101.66 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=81.3
Q ss_pred ceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH------------------cCCcc-cCHHHhcc
Q 046427 186 VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA------------------TGVGL-VSFEEAIS 245 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~------------------~g~~~-~~l~ell~ 245 (595)
++++..-++|+|||+|.||..+|..+.. |++|++||++... +...+ .++.. .+++++++
T Consensus 30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~ 108 (432)
T 3pid_A 30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR 108 (432)
T ss_dssp -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence 4566777799999999999999999988 9999999987632 22211 12333 36889999
Q ss_pred ccCEEEEeCCCChh-------cccccc--HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 246 TADFISLHMPLTPA-------TSKMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 246 ~aD~V~l~~Plt~~-------t~~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+||+|++|+|...+ +..+.. +.... |++|+++|+.++..+-..+.+.+.+.+..+
T Consensus 109 ~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v 172 (432)
T 3pid_A 109 NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV 172 (432)
T ss_dssp TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence 99999999995421 111221 33445 899999999999888778888888877544
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.9e-07 Score=92.79 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=76.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-----------HHcC------------------Cc-ccCHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-----------RATG------------------VG-LVSFE 241 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g------------------~~-~~~l~ 241 (595)
++|+|||+|.||..+|..+...|++|++||++... +.+ .+.| +. ..+++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 95 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence 58999999999999999999999999999987522 211 1122 22 23678
Q ss_pred HhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCC
Q 046427 242 EAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFT 310 (595)
Q Consensus 242 ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~ 310 (595)
+.+++||+|++++|...+.+.-+-++....++++++|+....+- ....+.+.+... ++ .+.+.+.
T Consensus 96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~~~~~--~g~h~~~ 161 (302)
T 1f0y_A 96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQDRF--AGLHFFN 161 (302)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCGGGE--EEEEECS
T ss_pred HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCCcccE--EEEecCC
Confidence 88999999999999765443333344445678899888554443 334555555432 34 4555554
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=86.72 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=69.3
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHcCCc---ccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARATGVG---LVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~---~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
|++++|||.|.||+.+++.++.+|++|.+||++... ..+.+.+.. ..++.++++++|+|+.|+|.. ..++..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~ 97 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE 97 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence 889999999999999999999999999999987632 234555653 237889999999999999964 334444
Q ss_pred HHHhcCCCceEEEeccCC
Q 046427 267 EAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg 284 (595)
+.+++|.+++|++..
T Consensus 98 ---~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 98 ---RSLMPGKLFIDLGNP 112 (144)
T ss_dssp ---GGCCTTCEEEECCSS
T ss_pred ---HHcCCCCEEEEccCC
Confidence 447889999999864
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.9e-07 Score=91.13 Aligned_cols=101 Identities=13% Similarity=0.204 Sum_probs=75.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-HHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-RATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
++|||||+|.||+.+|+.+...|.+|.+||++... +.. ...|+... +++++++++|+|++|+| ...... .+
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~-----v~ 77 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFET-----VL 77 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHH-----HH
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHH-----HH
Confidence 48999999999999999999999999999987632 222 23476644 78999999999999999 443333 34
Q ss_pred hcCCCceEEEeccCCchhcHHHHHHHHhcC-Ce
Q 046427 270 FKMKKGVRIVNVARGGVVDEEALVRALDSG-II 301 (595)
Q Consensus 270 ~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i 301 (595)
..+++|.++|++..|-- .+.+.+.+..+ ++
T Consensus 78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~~~~ 108 (259)
T 2ahr_A 78 KPLHFKQPIISMAAGIS--LQRLATFVGQDLPL 108 (259)
T ss_dssp TTSCCCSCEEECCTTCC--HHHHHHHHCTTSCE
T ss_pred HHhccCCEEEEeCCCCC--HHHHHHhcCCCCCE
Confidence 45678999999976543 34566666654 44
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-07 Score=97.87 Aligned_cols=104 Identities=17% Similarity=0.275 Sum_probs=78.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCc---HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQ---ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~---~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
..++|||||+|.||+.+|..|...| .+|.+||++.. .+...+.|+... +..+++++||+|++|+| ......
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~ 99 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPF 99 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHH
Confidence 3458999999999999999999888 78999998763 334456687654 78899999999999999 455666
Q ss_pred cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
++. +....++++.+||+++-|-- .+.+.+.+.+
T Consensus 100 vl~-~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~ 132 (322)
T 2izz_A 100 ILD-EIGADIEDRHIVVSCAAGVT--ISSIEKKLSA 132 (322)
T ss_dssp HHH-HHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred HHH-HHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence 553 34456888999999976543 3445566654
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.1e-07 Score=99.02 Aligned_cols=116 Identities=22% Similarity=0.234 Sum_probs=80.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHH-----------cCC-------------cc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARA-----------TGV-------------GL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~-----------~g~-------------~~-~~l~ell~~ 246 (595)
++|||||+|.||+.+|..+...|++|++||++.. .+.+.+ .|. .. .+++ .+++
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 84 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALAA 84 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-HhcC
Confidence 5899999999999999999999999999998763 222211 221 11 2454 6899
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEE-EeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRI-VNVARGGVVDEEALVRALDSGIISQAALDVFTEEP 313 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gail-iN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP 313 (595)
||+|+.|+|...+.+.-+-++....++++++| +|+|.-.+ ..+.+.+... -...+++.|.+-|
T Consensus 85 aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i---~~ia~~~~~p-~~~ig~hf~~Pa~ 148 (483)
T 3mog_A 85 ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI---TAIAAEIKNP-ERVAGLHFFNPAP 148 (483)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHTTTSSSG-GGEEEEEECSSTT
T ss_pred CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH---HHHHHHccCc-cceEEeeecChhh
Confidence 99999999977655544444556678999999 57765443 4555555432 2246777776443
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-07 Score=92.23 Aligned_cols=70 Identities=10% Similarity=0.152 Sum_probs=57.4
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFK 271 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~ 271 (595)
.++|||||+|+||.++|+.|+..|++|.+||+. ++ +++|| ++|+|.. ....++ .+....
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~----------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~ 64 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP----------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAF 64 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG----------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTT
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH----------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHh
Confidence 368999999999999999999999999999972 22 57899 8999965 566665 344556
Q ss_pred CCCceEEEecc
Q 046427 272 MKKGVRIVNVA 282 (595)
Q Consensus 272 mk~gailiN~a 282 (595)
+++|+++++++
T Consensus 65 l~~g~ivvd~s 75 (232)
T 3dfu_A 65 ARRGQMFLHTS 75 (232)
T ss_dssp CCTTCEEEECC
T ss_pred cCCCCEEEEEC
Confidence 89999999985
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-07 Score=93.23 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=74.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCc-HHHHH-HcCCccc-CHHHhccccCEEEEeCCCChhccccccHHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQ-ADRAR-ATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~-~~~a~-~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
++|||||+|.||+.+|+.+...| .+|.+||++.. .+... ..|+... ++++++ +||+|++|+| ......++..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~-- 76 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKN-- 76 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTT--
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHH--
Confidence 37999999999999999999889 99999998753 23333 3476543 677888 9999999999 5555544431
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeE
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQ 303 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~g 303 (595)
+.. + +.++|+++.|-- .+.+.+.+..+ ++..
T Consensus 77 l~~-~-~~ivv~~~~g~~--~~~l~~~~~~~~~~v~ 108 (263)
T 1yqg_A 77 IRT-N-GALVLSVAAGLS--VGTLSRYLGGTRRIVR 108 (263)
T ss_dssp CCC-T-TCEEEECCTTCC--HHHHHHHTTSCCCEEE
T ss_pred hcc-C-CCEEEEecCCCC--HHHHHHHcCCCCcEEE
Confidence 222 4 899999965543 36677777764 4533
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.44 E-value=7e-07 Score=90.94 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=80.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCC---EEEEECCCCc-HHHHHH-cCCccc-CHHHhccccCEEEEeCCCChhcccccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGM---NVIAHDPYAQ-ADRARA-TGVGLV-SFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~~~-~~~a~~-~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
.++|||||+|+||+.+|+.+...|+ +|.+||++.. .+...+ .|+... +..+++++||+|++|+|. .....++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl~ 81 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVCE 81 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHHH
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHHH
Confidence 4689999999999999999998888 8999999873 333333 477654 789999999999999983 44555553
Q ss_pred HHHHhc-CCCceEEEeccCCchhcHHHHHHHHhcC-CeeEE
Q 046427 266 DEAFFK-MKKGVRIVNVARGGVVDEEALVRALDSG-IISQA 304 (595)
Q Consensus 266 ~~~l~~-mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga 304 (595)
+.-.. ++++.+||.++-|- ..+.+.+.+..+ ++.++
T Consensus 82 -~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~~~~vvr~ 119 (280)
T 3tri_A 82 -ELKDILSETKILVISLAVGV--TTPLIEKWLGKASRIVRA 119 (280)
T ss_dssp -HHHHHHHTTTCEEEECCTTC--CHHHHHHHHTCCSSEEEE
T ss_pred -HHHhhccCCCeEEEEecCCC--CHHHHHHHcCCCCeEEEE
Confidence 23334 68888888876553 456777777653 55444
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.3e-07 Score=97.47 Aligned_cols=105 Identities=22% Similarity=0.227 Sum_probs=75.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH-------------------cC-Ccc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA-------------------TG-VGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------------------~g-~~~-~~l~ell~~aD~V 250 (595)
++|+|||+|.||..+|..+...|++|++||++... +...+ .+ +.. .++++++++||+|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV 82 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII 82 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence 58999999999999999999999999999987632 22221 11 222 3688899999999
Q ss_pred EEeCCCCh---------hccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 251 SLHMPLTP---------ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 251 ~l~~Plt~---------~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
++|+|... ..+..+ +.....++++.++|+++.-.+-..+.+.+.+.+
T Consensus 83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~ 138 (450)
T 3gg2_A 83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE 138 (450)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence 99999542 233333 345566899999999997554445555555543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-06 Score=94.06 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=76.1
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHH-----------cC-----------Cc-ccCHHHhcccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARA-----------TG-----------VG-LVSFEEAISTA 247 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~-----------~g-----------~~-~~~l~ell~~a 247 (595)
=++|+|||+|.||..+|..+...|++|++||++.. .+.+.+ .| .. ..++ +.+++|
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a 115 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV 115 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence 35899999999999999999999999999998752 222111 11 01 1256 568899
Q ss_pred CEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCC
Q 046427 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFT 310 (595)
Q Consensus 248 D~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~ 310 (595)
|+|+.|+|...+.+.-+-++....++++++|+....+ + ....+.+.+.. .++ .+++.|.
T Consensus 116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~-~-~~~~la~~~~~~~~~--ig~hf~~ 175 (463)
T 1zcj_A 116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA-L-NVDDIASSTDRPQLV--IGTHFFS 175 (463)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS-S-CHHHHHTTSSCGGGE--EEEEECS
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC-c-CHHHHHHHhcCCcce--EEeecCC
Confidence 9999999965443333334445568999999874333 3 33466666643 234 5566663
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.37 E-value=1e-06 Score=95.64 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=76.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH-------------------cC-Ccc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA-------------------TG-VGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------------------~g-~~~-~~l~ell~~aD~V 250 (595)
-+++|||+|.+|..+|..+...|++|++||++... +...+ .+ +.. .++.+.+++||+|
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv 88 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV 88 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence 37999999999999999999999999999987643 22211 11 222 3788999999999
Q ss_pred EEeCCCChh----------ccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 251 SLHMPLTPA----------TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 251 ~l~~Plt~~----------t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
++|+|...+ .+..+ +.....|++|.++|++|.-.+-..+.+.+.+.+
T Consensus 89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e 145 (446)
T 4a7p_A 89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE 145 (446)
T ss_dssp EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence 999984321 22222 345667999999999997655456666666554
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.9e-07 Score=97.22 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=76.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH-------------------cC-Ccc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA-------------------TG-VGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------------------~g-~~~-~~l~ell~~aD~V 250 (595)
++|+|||+|.||..+|..+...|++|++||++... +...+ .| +.. .++++++++||+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 37999999999999999999999999999987532 22222 22 222 3678889999999
Q ss_pred EEeCCCChh---------ccccccHHHHhcCCC---ceEEEeccCCchhc-HHHHHHHHhc
Q 046427 251 SLHMPLTPA---------TSKMFNDEAFFKMKK---GVRIVNVARGGVVD-EEALVRALDS 298 (595)
Q Consensus 251 ~l~~Plt~~---------t~~li~~~~l~~mk~---gailiN~arg~~vd-~~aL~~aL~~ 298 (595)
++|+|.... ....+ +.....|++ +.++|+++...+-. .+.+.+.+.+
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~ 140 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED 140 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence 999995443 33333 333445788 99999998776655 5666666655
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=9.4e-07 Score=91.44 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=69.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhc-CCC-EEEEECCCCcH--HHHHHcC--Ccc-cCHHHhccccCEEEEeCCCChhcccc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKG-LGM-NVIAHDPYAQA--DRARATG--VGL-VSFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~--~~a~~~g--~~~-~~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
..++|||||+|.||+.+++.+.. +|. +|.+||++... ..+...+ +.. .++++++++||+|++|+|. +..+
T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v 210 (312)
T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPI 210 (312)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcc
Confidence 46799999999999999999875 486 89999997632 2233435 543 4799999999999999994 3556
Q ss_pred ccHHHHhcCCCceEEEeccCCch
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~ 286 (595)
+.. ..+++|.++++++....
T Consensus 211 ~~~---~~l~~g~~vi~~g~~~p 230 (312)
T 2i99_A 211 LFG---EWVKPGAHINAVGASRP 230 (312)
T ss_dssp BCG---GGSCTTCEEEECCCCST
T ss_pred cCH---HHcCCCcEEEeCCCCCC
Confidence 654 46899999999976554
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=87.69 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=70.9
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccH
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
.++|||||+|.||+.+|+.+...| .+|.+||++... .|+... ++.+++++||+|++|+| ......++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~~- 76 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVLN- 76 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHHH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHHH-
Confidence 358999999999999999999888 689999987643 466554 78899999999999999 455555553
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
+....++++.++++++.- +.+.+.+.+..+
T Consensus 77 ~l~~~l~~~~vv~~~~gi---~~~~l~~~~~~~ 106 (262)
T 2rcy_A 77 NIKPYLSSKLLISICGGL---NIGKLEEMVGSE 106 (262)
T ss_dssp HSGGGCTTCEEEECCSSC---CHHHHHHHHCTT
T ss_pred HHHHhcCCCEEEEECCCC---CHHHHHHHhCCC
Confidence 233445555555555433 334566666654
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=7.4e-07 Score=86.15 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=80.2
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-HHcC-------CcccCHHHhccccCEEEEeCCCChhccc
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-RATG-------VGLVSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~g-------~~~~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
++|+|+| .|.||+.+|+.+...|++|.++|++... +.. ...+ +...+++++++++|+|++|+| ...+..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~-~~~~~~ 79 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIP-WEHAID 79 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSC-HHHHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCC-hhhHHH
Confidence 3799999 9999999999999999999999987532 211 1112 333468888999999999999 444555
Q ss_pred cccHHHHhcCCCceEEEeccCCchhc------------HHHHHHHHhcCCeeEEEEecCCCCC
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVD------------EEALVRALDSGIISQAALDVFTEEP 313 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd------------~~aL~~aL~~g~i~ga~lDv~~~EP 313 (595)
++. +....++ +.++++++.|--.+ .+.+.+.+...++ ++.+.+.|
T Consensus 80 ~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~----v~~~~~~~ 136 (212)
T 1jay_A 80 TAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKV----VSALHTIP 136 (212)
T ss_dssp HHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSCE----EECCTTCC
T ss_pred HHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCCeE----EEEccchH
Confidence 543 2223454 89999999865421 5677777764443 46666665
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=3.1e-06 Score=90.64 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=77.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCC------------------cc-cCHHHhccccCEEEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGV------------------GL-VSFEEAISTADFISL 252 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~------------------~~-~~l~ell~~aD~V~l 252 (595)
++|+|||+|.||..+|..+.. |++|++||++... +...+.+. .. .++.+.+++||+|++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 379999999999999999999 9999999987532 22222232 11 256788899999999
Q ss_pred eCCCCh----------hccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 253 HMPLTP----------ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 253 ~~Plt~----------~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
|+|... .....+ +.... ++++.++|+.+.-++-..+.+.+.+....+
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v 136 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDRI 136 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSCE
T ss_pred ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCCeE
Confidence 999652 133333 23444 899999999887777667778887766544
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.28 E-value=2e-06 Score=89.70 Aligned_cols=103 Identities=22% Similarity=0.226 Sum_probs=73.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc-CC---------------cccCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT-GV---------------GLVSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~-g~---------------~~~~l~ell~~aD~V~l~~P 255 (595)
++|+|||+|.||+.+|..+...|++|.+||++.. .+...+. ++ ...+++++++++|+|++|+|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 84 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 84 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence 5899999999999999999999999999998753 2333333 21 12378888999999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
... +..++ +.....+++++++|++ .|-......+.+.+..
T Consensus 85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~ 124 (359)
T 1bg6_A 85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE 124 (359)
T ss_dssp GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence 544 45555 3445568999999999 4412233334444443
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.4e-06 Score=84.20 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=68.6
Q ss_pred eeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||.|. +|+.+|..|...|++|..++++. .++.+.+++||+|+.++|. .+++.
T Consensus 155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------~~L~~~~~~ADIVI~Avg~----p~~I~ 218 (285)
T 3p2o_A 155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLLR 218 (285)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHTTCSEEEECSSC----TTCBC
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHhhcCCEEEECCCC----CCcCC
Confidence 5689999999999988 69999999999999999998642 2688999999999999983 34576
Q ss_pred HHHHhcCCCceEEEeccCCch
Q 046427 266 DEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~ 286 (595)
.+. +|+|+++||++.-.+
T Consensus 219 ~~~---vk~GavVIDVgi~~~ 236 (285)
T 3p2o_A 219 SDM---VKEGVIVVDVGINRL 236 (285)
T ss_dssp GGG---SCTTEEEEECCCEEC
T ss_pred HHH---cCCCeEEEEeccCcc
Confidence 654 599999999996554
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=89.64 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=75.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc-------------cCHHHhcc---ccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL-------------VSFEEAIS---TADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-------------~~l~ell~---~aD~V~l~~P 255 (595)
++|+|||+|.||+.+|..+...|.+|.+||++.. .+...+.|+.. .+.+++.+ ++|+|++|+|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence 4899999999999999999999999999998752 33333434321 13445554 8999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCee
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIIS 302 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ 302 (595)
. ..+..++. .....++++.++|+++.| +-..+.+.+.+...++.
T Consensus 84 ~-~~~~~v~~-~l~~~l~~~~~iv~~~~g-~~~~~~l~~~~~~~~vi 127 (316)
T 2ew2_A 84 A-QQLDAMFK-AIQPMITEKTYVLCLLNG-LGHEDVLEKYVPKENIL 127 (316)
T ss_dssp H-HHHHHHHH-HHGGGCCTTCEEEECCSS-SCTHHHHTTTSCGGGEE
T ss_pred c-ccHHHHHH-HHHHhcCCCCEEEEecCC-CCcHHHHHHHcCCccEE
Confidence 4 45555553 344568899999999864 32346666666655554
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-06 Score=94.31 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=72.4
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc-------C-------------Ccc-cCHHHhccccCE
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARAT-------G-------------VGL-VSFEEAISTADF 249 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-------g-------------~~~-~~l~ell~~aD~ 249 (595)
..+|+|||+|.||..+|..+...|++|++||++... +...+. | +.. .++++.+++||+
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv 87 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV 87 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence 358999999999999999999999999999987532 222221 1 112 257788899999
Q ss_pred EEEeCCCC---------hhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHh
Q 046427 250 ISLHMPLT---------PATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALD 297 (595)
Q Consensus 250 V~l~~Plt---------~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~ 297 (595)
|++|+|.. ...+..+ +.....+++++++|+.+...+=..+.+.+.+.
T Consensus 88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~ 143 (478)
T 2y0c_A 88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVA 143 (478)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHH
Confidence 99999942 2333333 33445689999999998533333444444443
|
| >1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.3e-06 Score=82.90 Aligned_cols=72 Identities=11% Similarity=0.166 Sum_probs=60.5
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCC---cEEEEEEcCCCCcHHHHHHHhcCCCcceEEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQK---QAVMTIGVDEEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~---~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
-.|.+.+.|+||+++.|++.|+++++||.+|+..+..+|+ .|.+.+++++...++++++|+++++|.+|+.+
T Consensus 5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~~Le~LL~kLrkI~gV~~V~Rv 79 (223)
T 1y7p_A 5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEEE 79 (223)
T ss_dssp EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEEE
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCCCHHHHHHHHhCCCCeeEEEEE
Confidence 3578889999999999999999999999999998876443 68888999999666999999999999999876
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=84.54 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=74.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEE-ECCCCcH-H-HHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccHHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIA-HDPYAQA-D-RARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~~~-~-~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
++|+|||+|.||+.+|+.+...|++|.+ ||++... + .+.+.|+.. .+..+.+++||+|++|+|. .....++..
T Consensus 24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~~-- 100 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIVTQ-- 100 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHHTT--
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHHHH--
Confidence 6899999999999999999999999999 9987632 2 234456543 3556678999999999993 334433322
Q ss_pred HhcCCCceEEEeccCCch------------hcHHHHHHHHhcCCeeEE
Q 046427 269 FFKMKKGVRIVNVARGGV------------VDEEALVRALDSGIISQA 304 (595)
Q Consensus 269 l~~mk~gailiN~arg~~------------vd~~aL~~aL~~g~i~ga 304 (595)
+.. .++.++|+++-|-- ...+.+.+.+...++..+
T Consensus 101 l~~-~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~~ 147 (220)
T 4huj_A 101 VSD-WGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVKA 147 (220)
T ss_dssp CSC-CTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEEE
T ss_pred hhc-cCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEEC
Confidence 222 35789999985431 145666677765555333
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-06 Score=89.34 Aligned_cols=90 Identities=14% Similarity=0.208 Sum_probs=67.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECC--CCc-HHHHHHcCC-----------ccc---CHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDP--YAQ-ADRARATGV-----------GLV---SFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~--~~~-~~~a~~~g~-----------~~~---~l~ell~~aD~V~l~~P 255 (595)
++|+|||+|.||+.+|..+...|.+|.+||+ +.. .+...+.+. ... ++.+.+++||+|++|+|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 3799999999999999999988999999998 542 233333332 222 56788899999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
.. .+..++. .... ++++.++|+++.|-
T Consensus 81 ~~-~~~~v~~-~i~~-l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 81 TD-GVLPVMS-RILP-YLKDQYIVLISKGL 107 (335)
T ss_dssp GG-GHHHHHH-HHTT-TCCSCEEEECCCSE
T ss_pred hH-HHHHHHH-HHhc-CCCCCEEEEEcCcC
Confidence 54 4555553 3345 78899999998764
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4e-06 Score=96.18 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=77.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-----------HHcCC-------------cc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-----------RATGV-------------GL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g~-------------~~-~~l~ell~~ 246 (595)
++|||||+|.||..+|..+...|++|++||++... +.+ .+.|. .. .++ +.+++
T Consensus 315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 393 (715)
T 1wdk_A 315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 393 (715)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC
Confidence 57999999999999999999999999999987521 211 11231 11 245 67899
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFT 310 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~ 310 (595)
||+|+.|+|...+.+.-+-.+....++++++|+..+.+- ....+.+.+... ++ .+++.|.
T Consensus 394 aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~~~~~--ig~hf~~ 454 (715)
T 1wdk_A 394 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALKRPENF--VGMHFFN 454 (715)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSCGGGE--EEEECCS
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCC--CHHHHHHHhcCccce--EEEEccC
Confidence 999999999776655544445556789999997443332 334555555332 34 5666665
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-06 Score=90.24 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=76.4
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCC--------------cc-cCHHHhccccCEEEEeCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGV--------------GL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~--------------~~-~~l~ell~~aD~V~l~~P 255 (595)
-++|+|||.|.+|..+|..+...|.+|..||++.. .+...+.+. .. .++++.+++||+|++++|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp 108 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP 108 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence 46899999999999999999999999999998753 233333221 12 378899999999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEeccCCchhcH----HHHHHHHhc
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE----EALVRALDS 298 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~arg~~vd~----~aL~~aL~~ 298 (595)
. ...+.++ ++....+++++++|++..|-..+. +.+.+.+..
T Consensus 109 ~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~ 153 (356)
T 3k96_A 109 S-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ 153 (356)
T ss_dssp H-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS
T ss_pred H-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC
Confidence 4 4455555 334556889999999987654432 344555543
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=5e-06 Score=89.72 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=73.9
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc---ccCHHHh---------------ccccCEEE
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG---LVSFEEA---------------ISTADFIS 251 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~---~~~l~el---------------l~~aD~V~ 251 (595)
-+|.++.|||+|.+|..+|..+...|++|++||++...-.....|.. ...++++ +++||+|+
T Consensus 9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi 88 (431)
T 3ojo_A 9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI 88 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence 46889999999999999999999999999999997643222222311 1134433 45799999
Q ss_pred EeCCCChhc--------ccccc--HHHHhcCCCceEEEeccCCchhcHHHHHHHH
Q 046427 252 LHMPLTPAT--------SKMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRAL 296 (595)
Q Consensus 252 l~~Plt~~t--------~~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~aL 296 (595)
+|+|..... ..+.. +.....|++|.++|+.|.-.+-..+.+.+.+
T Consensus 89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i 143 (431)
T 3ojo_A 89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV 143 (431)
T ss_dssp ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH
T ss_pred EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH
Confidence 999954321 11322 3456679999999999987776667766653
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.5e-06 Score=92.38 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=74.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--CCEEEEECCCCcH-HHHHHc-------------------CCcc-cCHHHhccccCE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--GMNVIAHDPYAQA-DRARAT-------------------GVGL-VSFEEAISTADF 249 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~-~~a~~~-------------------g~~~-~~l~ell~~aD~ 249 (595)
++|+|||+|.||..+|..+... |++|++||++... +...+. ++.. .++.+.+++||+
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv 89 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL 89 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence 5899999999999999999866 7999999986532 211110 1222 256788899999
Q ss_pred EEEeCCCChh--------------ccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 250 ISLHMPLTPA--------------TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 250 V~l~~Plt~~--------------t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
|++|+|.... ....+ +.....++++.++|+++.-.+-..+.+.+.+.+
T Consensus 90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~ 151 (481)
T 2o3j_A 90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE 151 (481)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence 9999985331 11111 334567999999999987665556667777765
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.15 E-value=8.4e-06 Score=93.64 Aligned_cols=113 Identities=13% Similarity=0.107 Sum_probs=75.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH-----------cCC-------------cc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA-----------TGV-------------GL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g~-------------~~-~~l~ell~~ 246 (595)
++|||||+|.||..+|..+...|++|++||++... +.+.+ .|. .. .++ +.+++
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 391 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD 391 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence 57999999999999999999999999999987521 21111 121 11 245 57899
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFT 310 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~ 310 (595)
||+|+.|+|...+.+.-+-.+....++++++|+..+.+- ....+.+.+.. .++ .+++.|.
T Consensus 392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~p~~~--iG~hf~~ 452 (725)
T 2wtb_A 392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTI--DLNKIGERTKSQDRI--VGAHFFS 452 (725)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHTTTCSCTTTE--EEEEECS
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCC--CHHHHHHHhcCCCCE--EEecCCC
Confidence 999999999776555444445556789999986443332 33445555533 244 5666665
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=9.7e-07 Score=92.92 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=68.2
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcC--------------Ccc-cCHHHhccccCEEEEeCCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATG--------------VGL-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g--------------~~~-~~l~ell~~aD~V~l~~Plt 257 (595)
+|+|||+|.||..+|..|...|++|.+||++.. .+...+.+ +.. .++++++++||+|++|+|.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~- 95 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT- 95 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence 899999999999999999999999999998752 23233322 222 3688889999999999994
Q ss_pred hhccccccHH---HHhcCCC-ceEEEeccCCc
Q 046427 258 PATSKMFNDE---AFFKMKK-GVRIVNVARGG 285 (595)
Q Consensus 258 ~~t~~li~~~---~l~~mk~-gailiN~arg~ 285 (595)
.....++... ....+++ ++++|+++.|-
T Consensus 96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi 127 (366)
T 1evy_A 96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 127 (366)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred HHHHHHHHHhHHHHHHhcCccCCEEEEECCcC
Confidence 5556555331 3345677 89999998764
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.8e-06 Score=88.69 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=68.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC-------CEEEEECCCCc-----H-HHHHHc--------------CCcc-cCHHHhc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG-------MNVIAHDPYAQ-----A-DRARAT--------------GVGL-VSFEEAI 244 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~-----~-~~a~~~--------------g~~~-~~l~ell 244 (595)
++|+|||+|.||..+|..+...| .+|.+||++.. . +...+. ++.. .++++++
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA 88 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence 58999999999999999998878 89999998764 2 222221 1222 3678889
Q ss_pred cccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCch
Q 046427 245 STADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 245 ~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~ 286 (595)
++||+|++|+|. ..+..++. +....+++++++|+++.|-.
T Consensus 89 ~~aD~Vilav~~-~~~~~v~~-~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 89 EDADILIFVVPH-QFIGKICD-QLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp TTCSEEEECCCG-GGHHHHHH-HHTTCSCTTCEEEECCCCBC
T ss_pred cCCCEEEEeCCH-HHHHHHHH-HHHhhCCCCCEEEEECCccC
Confidence 999999999994 44555552 33456788999999988643
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.7e-06 Score=91.08 Aligned_cols=102 Identities=18% Similarity=0.154 Sum_probs=72.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CC-EEEEECCCCc----HHHHHHc----------------------C-CcccCHHHh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GM-NVIAHDPYAQ----ADRARAT----------------------G-VGLVSFEEA 243 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~-~V~~~d~~~~----~~~a~~~----------------------g-~~~~~l~el 243 (595)
++|+|||+|.||..+|..+... |+ +|++||++.. .-..... | +...+-.+.
T Consensus 19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~ea 98 (478)
T 3g79_A 19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFSR 98 (478)
T ss_dssp CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHHH
Confidence 5899999999999999999999 99 9999998765 3211111 1 122222678
Q ss_pred ccccCEEEEeCCCCh--------hcccccc--HHHHhcCCCceEEEeccCCchhcHHHHHH
Q 046427 244 ISTADFISLHMPLTP--------ATSKMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVR 294 (595)
Q Consensus 244 l~~aD~V~l~~Plt~--------~t~~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~ 294 (595)
+++||+|++|+|... +...+.. +.....|++|.++|+++.-.+-..+.+.+
T Consensus 99 ~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~ 159 (478)
T 3g79_A 99 ISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK 159 (478)
T ss_dssp GGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred HhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence 899999999999542 2222322 34556799999999999766655555554
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.2e-05 Score=81.39 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=109.9
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-----------HHcCC--------------c-ccCHHHhc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-----------RATGV--------------G-LVSFEEAI 244 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g~--------------~-~~~l~ell 244 (595)
-++|+|||.|.||+.+|..+...|++|+.||+.... +.+ .+.|. . ..++.+.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~ 85 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV 85 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence 468999999999999999999999999999987521 110 11111 1 13688999
Q ss_pred cccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCCCCCCCCCcccccC
Q 046427 245 STADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFTEEPPAKDSKLVLH 323 (595)
Q Consensus 245 ~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~~L~~~ 323 (595)
++||+|+=++|-.-+.+.-+-++.=+.++++++|-.-.++ +...++.+.+..- ++ .++.-|.+-|. -||.+
T Consensus 86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~p~r~--ig~HffNP~~~---m~LVE- 157 (319)
T 3ado_A 86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAHVKQC--IVAHPVNPPYY---IPLVE- 157 (319)
T ss_dssp TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTTGGGE--EEEEECSSTTT---CCEEE-
T ss_pred ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccCCCcE--EEecCCCCccc---cchHH-
Confidence 9999999999988777766655555668999988654443 3455666665432 45 56666665433 36664
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 324 ENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 324 ~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
+|-+|+.. .++.+.+.+|.+.-+-.+++..-..+....+.+. ||+.-|-+|
T Consensus 158 --iv~g~~Ts-----------~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~l 209 (319)
T 3ado_A 158 --LVPHPETS-----------PATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRL 209 (319)
T ss_dssp --EEECTTCC-----------HHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHH
T ss_pred --hcCCCCCc-----------HHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHH
Confidence 66666542 3334445555543333333232234445555554 666555554
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.7e-06 Score=86.67 Aligned_cols=86 Identities=22% Similarity=0.317 Sum_probs=65.4
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcC-----------Ccc-cCHHHhccccCEEEEeCCCCh
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATG-----------VGL-VSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g-----------~~~-~~l~ell~~aD~V~l~~Plt~ 258 (595)
..+|+|||+|.||..+|.+|...|.+|.+||++.. .+...+.| +.. .++++ ++.+|+|++|+| +.
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~~ 91 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-VQ 91 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-GG
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-HH
Confidence 35899999999999999999999999999998752 23333334 232 36778 899999999999 45
Q ss_pred hccccccHHHHhcCC-CceEEEeccCC
Q 046427 259 ATSKMFNDEAFFKMK-KGVRIVNVARG 284 (595)
Q Consensus 259 ~t~~li~~~~l~~mk-~gailiN~arg 284 (595)
.+..++. .++ ++.++|+++.|
T Consensus 92 ~~~~v~~-----~l~~~~~~vv~~~nG 113 (335)
T 1z82_A 92 YIREHLL-----RLPVKPSMVLNLSKG 113 (335)
T ss_dssp GHHHHHT-----TCSSCCSEEEECCCC
T ss_pred HHHHHHH-----HhCcCCCEEEEEeCC
Confidence 5555543 233 78899999876
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.04 E-value=5.6e-06 Score=75.43 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=75.7
Q ss_pred ecCCEEEEEeC----ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccc
Q 046427 190 LVGKTLAVMGF----GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 190 l~gktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
++-++|+|||+ |++|+.+++.++..|++|+.+||.... -.|.... +++|+.+..|++++++| .+....++
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~----i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~ 86 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA 86 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe----ECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH
Confidence 45678999999 999999999999999999999886421 1466544 79999999999999999 56677776
Q ss_pred cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.+ ..+ +..++++++++. ..+++.++.++..+
T Consensus 87 ~~-~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi 117 (138)
T 1y81_A 87 KE-AVE-AGFKKLWFQPGA----ESEEIRRFLEKAGV 117 (138)
T ss_dssp HH-HHH-TTCCEEEECTTS----CCHHHHHHHHHHTC
T ss_pred HH-HHH-cCCCEEEEcCcc----HHHHHHHHHHHCCC
Confidence 43 333 667788888754 24666666666555
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=8.9e-06 Score=86.70 Aligned_cols=93 Identities=23% Similarity=0.304 Sum_probs=76.3
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECC-------CCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDP-------YAQADRARATGVGLVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~-------~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
-|+||+|+|||+|.-|.+-|..|+..|.+|++--+ ..+...+.+.|++..+..|+.++||+|.+.+|... ..
T Consensus 34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD~~-q~ 112 (491)
T 3ulk_A 34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQ-HS 112 (491)
T ss_dssp GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCGGG-HH
T ss_pred HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCChhh-HH
Confidence 49999999999999999999999999999887432 12456788899998899999999999999999654 33
Q ss_pred ccccHHHHhcCCCceEEEeccCC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg 284 (595)
.+.. +....||+|+.|. .|.|
T Consensus 113 ~vy~-~I~p~lk~G~~L~-faHG 133 (491)
T 3ulk_A 113 DVVR-TVQPLMKDGAALG-YSHG 133 (491)
T ss_dssp HHHH-HHGGGSCTTCEEE-ESSC
T ss_pred HHHH-HHHhhCCCCCEEE-ecCc
Confidence 4454 5778899999887 4444
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.3e-06 Score=89.29 Aligned_cols=90 Identities=11% Similarity=0.172 Sum_probs=66.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC-------CEEEEECCCCc-----H-HHHHHc--------------CCcc-cCHHHhc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG-------MNVIAHDPYAQ-----A-DRARAT--------------GVGL-VSFEEAI 244 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~-----~-~~a~~~--------------g~~~-~~l~ell 244 (595)
++|+|||+|.||..+|..+...| .+|.+||++.. . +...+. ++.. .++++++
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~ 101 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI 101 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence 47999999999999999998777 89999998764 2 222221 1222 2578889
Q ss_pred cccCEEEEeCCCChhccccccHHHHh----cCCCceEEEeccCC
Q 046427 245 STADFISLHMPLTPATSKMFNDEAFF----KMKKGVRIVNVARG 284 (595)
Q Consensus 245 ~~aD~V~l~~Plt~~t~~li~~~~l~----~mk~gailiN~arg 284 (595)
++||+|++|+| ......++. +... .+++++++|+++.|
T Consensus 102 ~~aDvVilav~-~~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~G 143 (375)
T 1yj8_A 102 NDADLLIFIVP-CQYLESVLA-SIKESESIKIASHAKAISLTKG 143 (375)
T ss_dssp TTCSEEEECCC-HHHHHHHHH-HHTC---CCCCTTCEEEECCCS
T ss_pred cCCCEEEEcCC-HHHHHHHHH-HHhhhhhccCCCCCEEEEeCCc
Confidence 99999999999 455555553 2333 57889999999876
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.6e-06 Score=87.22 Aligned_cols=106 Identities=20% Similarity=0.201 Sum_probs=73.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-----C-CEEEEECCCCcHHHHHH-cCCccc--------------CHHHhccccCEEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-----G-MNVIAHDPYAQADRARA-TGVGLV--------------SFEEAISTADFIS 251 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-----G-~~V~~~d~~~~~~~a~~-~g~~~~--------------~l~ell~~aD~V~ 251 (595)
++|+|||+|.||..+|..|... | .+|.+||+....+...+ .|+... +..+.++.+|+|+
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 88 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYIL 88 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECCHHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEcHHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEEE
Confidence 4799999999999999999987 8 99999998212333444 565322 2335678999999
Q ss_pred EeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 252 LHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 252 l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+|+|... +..++ +.....++++.++|++.-| +-..+.+.+.+...++
T Consensus 89 l~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~v 135 (317)
T 2qyt_A 89 FCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTVV 135 (317)
T ss_dssp ECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTTB
T ss_pred EecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCcE
Confidence 9999544 55554 2333457788999998765 3234566666655443
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.6e-06 Score=78.76 Aligned_cols=94 Identities=16% Similarity=0.310 Sum_probs=66.7
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcC-CCEEEEECCCCc-HHHHHHcCCccc-----C---HHHh--ccccCEEEEeCC
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGL-GMNVIAHDPYAQ-ADRARATGVGLV-----S---FEEA--ISTADFISLHMP 255 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~-~~~a~~~g~~~~-----~---l~el--l~~aD~V~l~~P 255 (595)
.++.+++++|+|+|.+|+.+|+.|+.. |++|+++|++.. .+.+.+.|+..+ + +.++ +.++|+|++++|
T Consensus 35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP 114 (183)
T ss_dssp BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence 457788999999999999999999998 999999998763 334455666422 2 3444 678999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEeccC
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
..+.+..++ ..+..+.+...++....
T Consensus 115 ~~~~~~~~~--~~~~~~~~~~~ii~~~~ 140 (183)
T 3c85_A 115 HHQGNQTAL--EQLQRRNYKGQIAAIAE 140 (183)
T ss_dssp SHHHHHHHH--HHHHHTTCCSEEEEEES
T ss_pred ChHHHHHHH--HHHHHHCCCCEEEEEEC
Confidence 654444333 24455665656665433
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-05 Score=79.80 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=70.3
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEE-EEECCCCcHHHHHHcCCcccCHHHhc-cccCEEEEeCCCChhccccccHHHHhc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNV-IAHDPYAQADRARATGVGLVSFEEAI-STADFISLHMPLTPATSKMFNDEAFFK 271 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V-~~~d~~~~~~~a~~~g~~~~~l~ell-~~aD~V~l~~Plt~~t~~li~~~~l~~ 271 (595)
+|||||+|.||+.+++.+...|+++ .+||+....+ . .+.++++++ .++|+|++|+|.. ..... ....
T Consensus 2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~---~---~~~~~~~l~~~~~DvVv~~~~~~-~~~~~----~~~~ 70 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHE---K---MVRGIDEFLQREMDVAVEAASQQ-AVKDY----AEKI 70 (236)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCT---T---EESSHHHHTTSCCSEEEECSCHH-HHHHH----HHHH
T ss_pred EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchh---h---hcCCHHHHhcCCCCEEEECCCHH-HHHHH----HHHH
Confidence 7999999999999999998889997 5889864211 1 345799999 7999999999943 22222 2345
Q ss_pred CCCceEEEeccCCchhcH---HHHHHHHhcC
Q 046427 272 MKKGVRIVNVARGGVVDE---EALVRALDSG 299 (595)
Q Consensus 272 mk~gailiN~arg~~vd~---~aL~~aL~~g 299 (595)
++.|..+++.+.+..-+. +.|.++.++.
T Consensus 71 l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~ 101 (236)
T 2dc1_A 71 LKAGIDLIVLSTGAFADRDFLSRVREVCRKT 101 (236)
T ss_dssp HHTTCEEEESCGGGGGSHHHHHHHHHHHHHH
T ss_pred HHCCCcEEEECcccCChHHHHHHHHHHHHhc
Confidence 788999999988776554 5666666543
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.6e-06 Score=84.07 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=69.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc---CC----c-ccCHHHhccccCEEEEeCCCChhcccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARAT---GV----G-LVSFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---g~----~-~~~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
++|+|||+|.||+.+|..+...|.+|.+||+.... +..... +. . ..+..+.++++|+|++|+|.. .+..+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v 79 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA 79 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHH
Confidence 37999999999999999999999999999987531 111111 11 0 123356778999999999954 45555
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHh
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALD 297 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~ 297 (595)
+ +.....++++.++|++..|- -..+.+.+.+.
T Consensus 80 ~-~~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~ 111 (291)
T 1ks9_A 80 V-KSLASTLPVTTPILLIHNGM-GTIEELQNIQQ 111 (291)
T ss_dssp H-HHHHTTSCTTSCEEEECSSS-CTTGGGTTCCS
T ss_pred H-HHHHhhCCCCCEEEEecCCC-CcHHHHHHhcC
Confidence 5 33455688899999986643 22334444443
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-05 Score=81.56 Aligned_cols=81 Identities=14% Similarity=0.277 Sum_probs=68.7
Q ss_pred eeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||.|. +|+.+|+.|...|.+|..++.+. .++.+.+++||+|+.+++. .+++.
T Consensus 154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~lI~ 217 (288)
T 1b0a_A 154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------KNLRHHVENADLLIVAVGK----PGFIP 217 (288)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------SCHHHHHHHCSEEEECSCC----TTCBC
T ss_pred CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHhccCCEEEECCCC----cCcCC
Confidence 5679999999999997 59999999999999999997543 3688999999999999983 23676
Q ss_pred HHHHhcCCCceEEEeccCCch
Q 046427 266 DEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~ 286 (595)
.+. +|+|+++||+|.-.+
T Consensus 218 ~~~---vk~GavVIDVgi~r~ 235 (288)
T 1b0a_A 218 GDW---IKEGAIVIDVGINRL 235 (288)
T ss_dssp TTT---SCTTCEEEECCCEEC
T ss_pred HHH---cCCCcEEEEccCCcc
Confidence 655 599999999997654
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=82.31 Aligned_cols=81 Identities=25% Similarity=0.319 Sum_probs=67.6
Q ss_pred eeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHH--HhccccCEEEEeCCCChhcccc
Q 046427 187 GVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFE--EAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 187 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~--ell~~aD~V~l~~Plt~~t~~l 263 (595)
+.++.||++.|||.|. +|+.+|..|...|++|..++++.. +++ +.+++||+|+.++|. .++
T Consensus 160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~------------~l~l~~~~~~ADIVI~Avg~----p~~ 223 (300)
T 4a26_A 160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS------------TEDMIDYLRTADIVIAAMGQ----PGY 223 (300)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC------------HHHHHHHHHTCSEEEECSCC----TTC
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC------------CchhhhhhccCCEEEECCCC----CCC
Confidence 4689999999999988 699999999999999999987432 345 899999999999994 345
Q ss_pred ccHHHHhcCCCceEEEeccCCch
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~ 286 (595)
+..+. +|+|+++||++.-.+
T Consensus 224 I~~~~---vk~GavVIDvgi~~~ 243 (300)
T 4a26_A 224 VKGEW---IKEGAAVVDVGTTPV 243 (300)
T ss_dssp BCGGG---SCTTCEEEECCCEEE
T ss_pred CcHHh---cCCCcEEEEEeccCC
Confidence 76654 599999999996544
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-05 Score=80.01 Aligned_cols=81 Identities=14% Similarity=0.263 Sum_probs=68.3
Q ss_pred eeeecCCEEEEEeCChH-HHHHHHHHhcC--CCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccc
Q 046427 187 GVSLVGKTLAVMGFGKV-GTEVARRAKGL--GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 187 g~~l~gktvGIIGlG~I-G~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
+.++.||++.|||.|.| |+.+|+.|... |.+|..++++. .++.+.+++||+|+.+++. .++
T Consensus 153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t------------~~L~~~~~~ADIVI~Avg~----p~~ 216 (281)
T 2c2x_A 153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT------------RDLPALTRQADIVVAAVGV----AHL 216 (281)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC------------SCHHHHHTTCSEEEECSCC----TTC
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch------------hHHHHHHhhCCEEEECCCC----Ccc
Confidence 56799999999999985 99999999998 89999987543 3689999999999999983 235
Q ss_pred ccHHHHhcCCCceEEEeccCCch
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~ 286 (595)
|..+. +|+|+++||+|.-.+
T Consensus 217 I~~~~---vk~GavVIDVgi~r~ 236 (281)
T 2c2x_A 217 LTADM---VRPGAAVIDVGVSRT 236 (281)
T ss_dssp BCGGG---SCTTCEEEECCEEEE
T ss_pred cCHHH---cCCCcEEEEccCCCC
Confidence 77665 589999999997654
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.94 E-value=7.8e-06 Score=85.13 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=78.8
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc--------------cCHHHhccccCEEEEeCCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL--------------VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------------~~l~ell~~aD~V~l~~Plt 257 (595)
.++|+|||.|.||..+|..|...|.+|.+||+....+...+.|... .++++ ++.+|+|++|+|.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~- 80 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA- 80 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence 3689999999999999999999999999999853333444455421 25666 5899999999995
Q ss_pred hhccccccHHHHhcCCCceEEEeccCCc------------------hhcHHHHHHHHhcCCeeEE
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVARGG------------------VVDEEALVRALDSGIISQA 304 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~arg~------------------~vd~~aL~~aL~~g~i~ga 304 (595)
..+..++. .....++++++||.+..|= +-.++.+.+.+...++.++
T Consensus 81 ~~~~~~~~-~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~g 144 (335)
T 3ghy_A 81 PALESVAA-GIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGC 144 (335)
T ss_dssp HHHHHHHG-GGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEE
T ss_pred hhHHHHHH-HHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEE
Confidence 45555543 2334577899999998882 2235567777766665443
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=80.70 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=68.2
Q ss_pred eeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||.|. +|+.+|..|...|++|...+++. .+|++.+++||+|+.++|. .+++.
T Consensus 156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T------------~~L~~~~~~ADIVI~Avg~----p~~I~ 219 (286)
T 4a5o_A 156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT------------RDLADHVSRADLVVVAAGK----PGLVK 219 (286)
T ss_dssp TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHTCSEEEECCCC----TTCBC
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC------------cCHHHHhccCCEEEECCCC----CCCCC
Confidence 5689999999999987 79999999999999999987532 2688999999999999983 34676
Q ss_pred HHHHhcCCCceEEEeccCCch
Q 046427 266 DEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~ 286 (595)
.+. +|+|+++||++.-.+
T Consensus 220 ~~~---vk~GavVIDvgi~~~ 237 (286)
T 4a5o_A 220 GEW---IKEGAIVIDVGINRQ 237 (286)
T ss_dssp GGG---SCTTCEEEECCSCSS
T ss_pred HHH---cCCCeEEEEeccccc
Confidence 654 599999999996553
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.8e-05 Score=80.33 Aligned_cols=81 Identities=17% Similarity=0.317 Sum_probs=68.0
Q ss_pred eeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||.|. +|+.+|+.|...|++|...+++. .++++.+++||+|+.++|. .++|.
T Consensus 156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~~I~ 219 (285)
T 3l07_A 156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFIT 219 (285)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCBC
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHhcccCCEEEECCCC----CCCCC
Confidence 4579999999999998 69999999999999999987542 2688999999999999983 34576
Q ss_pred HHHHhcCCCceEEEeccCCch
Q 046427 266 DEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~ 286 (595)
.+. +|+|+++||++.-.+
T Consensus 220 ~~~---vk~GavVIDvgi~~~ 237 (285)
T 3l07_A 220 ADM---VKEGAVVIDVGINHV 237 (285)
T ss_dssp GGG---SCTTCEEEECCCEEE
T ss_pred HHH---cCCCcEEEEecccCc
Confidence 654 599999999996553
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.93 E-value=1.8e-05 Score=79.95 Aligned_cols=77 Identities=10% Similarity=0.139 Sum_probs=65.8
Q ss_pred ecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHH
Q 046427 190 LVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 190 l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
+.||++.|||.|. +|+.+|+.|.+.|++|+.++++. .++.+.+++||+|+.++|. .+++..+.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~ 211 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT------------KDIGSMTRSSKIVVVAVGR----PGFLNREM 211 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHHSSEEEECSSC----TTCBCGGG
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc------------ccHHHhhccCCEEEECCCC----CccccHhh
Confidence 8999999999986 79999999999999999997632 3688999999999999984 33676654
Q ss_pred HhcCCCceEEEeccCCc
Q 046427 269 FFKMKKGVRIVNVARGG 285 (595)
Q Consensus 269 l~~mk~gailiN~arg~ 285 (595)
+|+|+++||++.-.
T Consensus 212 ---vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 212 ---VTPGSVVIDVGINY 225 (276)
T ss_dssp ---CCTTCEEEECCCEE
T ss_pred ---ccCCcEEEEeccCc
Confidence 59999999999654
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.4e-05 Score=79.99 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=68.8
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||.|. +|+.+|+.|...|.+|..++.+. .+|.+.+++||+|+.+++. .++|
T Consensus 159 ~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~~I 222 (301)
T 1a4i_A 159 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------AHLDEEVNKGDILVVATGQ----PEMV 222 (301)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCB
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc------------ccHHHHhccCCEEEECCCC----cccC
Confidence 35689999999999996 69999999999999999997532 3689999999999999985 3357
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
..+. +|+|+++||+|.-.+
T Consensus 223 ~~~~---vk~GavVIDVgi~~~ 241 (301)
T 1a4i_A 223 KGEW---IKPGAIVIDCGINYV 241 (301)
T ss_dssp CGGG---SCTTCEEEECCCBC-
T ss_pred CHHH---cCCCcEEEEccCCCc
Confidence 7665 589999999998654
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.6e-06 Score=86.33 Aligned_cols=85 Identities=11% Similarity=0.038 Sum_probs=55.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEE-EEECCCCc-HHHH-HHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNV-IAHDPYAQ-ADRA-RATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V-~~~d~~~~-~~~a-~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
.+|||||+|+||+.+|+.+... ++| .+||++.. .+.. ...|....++++++++||+|++|+|... ...+ +
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVilav~~~~-~~~v-----~ 75 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-IKTV-----A 75 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-HHHH-----H
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEeCChHH-HHHH-----H
Confidence 3699999999999999999877 888 48998753 2222 3445522367888999999999999543 3333 3
Q ss_pred hcC-CCceEEEeccCC
Q 046427 270 FKM-KKGVRIVNVARG 284 (595)
Q Consensus 270 ~~m-k~gailiN~arg 284 (595)
..+ +++.+|||++-+
T Consensus 76 ~~l~~~~~ivi~~s~~ 91 (276)
T 2i76_A 76 NHLNLGDAVLVHCSGF 91 (276)
T ss_dssp TTTCCSSCCEEECCSS
T ss_pred HHhccCCCEEEECCCC
Confidence 333 688999999854
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.3e-05 Score=79.38 Aligned_cols=92 Identities=16% Similarity=0.104 Sum_probs=67.3
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
||++.|+|.|.+|++++..|...|.+|.+++|.... +.+ +.++...+++++- ++|+|+.++|..-.....++.+.+
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~~~~~~~~~l~-~~DiVInaTp~Gm~~~~~l~~~~l 195 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLGCDCFMEPPKS-AFDLIINATSASLHNELPLNKEVL 195 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHTCEEESSCCSS-CCSEEEECCTTCCCCSCSSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeEecHHHhc-cCCEEEEcccCCCCCCCCCChHHH
Confidence 899999999999999999999999999999998742 233 5666555665544 899999999975322223444422
Q ss_pred h-cCCCceEEEeccCCc
Q 046427 270 F-KMKKGVRIVNVARGG 285 (595)
Q Consensus 270 ~-~mk~gailiN~arg~ 285 (595)
. .++++.+++|+...+
T Consensus 196 ~~~l~~~~~v~D~vY~P 212 (269)
T 3phh_A 196 KGYFKEGKLAYDLAYGF 212 (269)
T ss_dssp HHHHHHCSEEEESCCSS
T ss_pred HhhCCCCCEEEEeCCCC
Confidence 2 456677777777665
|
| >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A | Back alignment and structure |
|---|
Probab=97.89 E-value=3.3e-05 Score=63.77 Aligned_cols=69 Identities=10% Similarity=0.144 Sum_probs=54.3
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEE--cCCC-CcHHHHHHHhcCCCcceEEEEe
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIG--VDEE-PSREVLKKIGETPAIEEFVFLK 594 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~--~d~~-~~~e~l~~L~~~~~v~~v~~i~ 594 (595)
|-+...|+||+++.|+++|+++|+||.++...+.. + .+.+.+. +.+. .-++++++|+++++|.+|..+.
T Consensus 8 l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~-~-~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~ 79 (88)
T 2ko1_A 8 IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD-G-IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLS 79 (88)
T ss_dssp EEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS-S-EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC-C-EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEec
Confidence 45678999999999999999999999999997643 2 5555544 4332 2348999999999999987663
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.87 E-value=4e-05 Score=79.21 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=77.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc---------------c-cCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG---------------L-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~---------------~-~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|||.|.||..+|..|...|.+|..|++.. .+...+.|+. . .+++++.+.+|+|++++|.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~ 81 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV 81 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence 589999999999999999999999999999875 3333343321 1 2566776799999999995
Q ss_pred ChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
.. +...+ +.....++++.++|.+.-| +-.++.+.+.+...++.+
T Consensus 82 ~~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl~ 125 (320)
T 3i83_A 82 VE-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVIS 125 (320)
T ss_dssp CT-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEEE
T ss_pred CC-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEEE
Confidence 54 55554 2334457888999988765 333567777777666544
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=9.2e-06 Score=84.07 Aligned_cols=93 Identities=20% Similarity=0.228 Sum_probs=69.6
Q ss_pred ceeeecCCEEEEEeCChH-HHHHHHHHhcCCCEEEEECCCCc--HHHHHHcCC---cc--------cCHHHhccccCEEE
Q 046427 186 VGVSLVGKTLAVMGFGKV-GTEVARRAKGLGMNVIAHDPYAQ--ADRARATGV---GL--------VSFEEAISTADFIS 251 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g~---~~--------~~l~ell~~aD~V~ 251 (595)
.|.++.|+++.|||.|.| |+.+|+.|.+.|.+|..+|++.. .+.+...+. .. .++.+.+++||+|+
T Consensus 171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI 250 (320)
T 1edz_A 171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI 250 (320)
T ss_dssp TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence 466899999999999976 99999999999999999988621 111111111 11 35889999999999
Q ss_pred EeCCCChhccccccHHHHhcCCCceEEEeccCC
Q 046427 252 LHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 252 l~~Plt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
.+++. + .-+|..+. +|+|+++||+|.-
T Consensus 251 sAtg~-p--~~vI~~e~---vk~GavVIDVgi~ 277 (320)
T 1edz_A 251 TGVPS-E--NYKFPTEY---IKEGAVCINFACT 277 (320)
T ss_dssp ECCCC-T--TCCBCTTT---SCTTEEEEECSSS
T ss_pred ECCCC-C--cceeCHHH---cCCCeEEEEcCCC
Confidence 99984 2 22366655 5899999999864
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.4e-06 Score=74.53 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=75.2
Q ss_pred CCEEEEEeC----ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccH
Q 046427 192 GKTLAVMGF----GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 192 gktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
-++|+|||+ |++|..+++.++..|++|+.+||....+ .-.|+... +++++....|++++++| .+....++..
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~--~i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~~ 89 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGK--TLLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQE 89 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTS--EETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHHH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccc--ccCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHHH
Confidence 578999999 8999999999999999999999865101 11466544 78999999999999999 5667777643
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
..+ ...+.++++.+. . ++++.+++++..+
T Consensus 90 -~~~-~g~~~i~i~~~~--~--~~~l~~~a~~~Gi 118 (145)
T 2duw_A 90 -AIA-IGAKTLWLQLGV--I--NEQAAVLAREAGL 118 (145)
T ss_dssp -HHH-HTCCEEECCTTC--C--CHHHHHHHHTTTC
T ss_pred -HHH-cCCCEEEEcCCh--H--HHHHHHHHHHcCC
Confidence 333 566778887642 2 6677777777655
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.6e-05 Score=78.19 Aligned_cols=105 Identities=11% Similarity=0.154 Sum_probs=73.6
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcCC---ccc---CHHHhccccCEEEEeCCCChh
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATGV---GLV---SFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g~---~~~---~l~ell~~aD~V~l~~Plt~~ 259 (595)
++.|++++|+|.|.+|+.+|..|...|. +|.++|++... +.+.+.+. ... ++.+.++++|+|+.|+|....
T Consensus 138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~ 217 (297)
T 2egg_A 138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH 217 (297)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence 5789999999999999999999999998 99999997532 23334343 222 456778999999999997542
Q ss_pred c--cc-cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 260 T--SK-MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 260 t--~~-li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
. .. .+. ...++++.+++|+.-... ... |.++.++
T Consensus 218 ~~~~~~~i~---~~~l~~~~~v~D~~y~P~-~T~-ll~~A~~ 254 (297)
T 2egg_A 218 PRVEVQPLS---LERLRPGVIVSDIIYNPL-ETK-WLKEAKA 254 (297)
T ss_dssp SCCSCCSSC---CTTCCTTCEEEECCCSSS-SCH-HHHHHHH
T ss_pred CCCCCCCCC---HHHcCCCCEEEEcCCCCC-CCH-HHHHHHH
Confidence 1 11 133 234788999999987533 233 4444443
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.6e-05 Score=80.93 Aligned_cols=107 Identities=10% Similarity=0.134 Sum_probs=71.7
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHHcCCcc---cCHHHhccccCEEEEeCCCC--hhccc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARATGVGL---VSFEEAISTADFISLHMPLT--PATSK 262 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~g~~~---~~l~ell~~aD~V~l~~Plt--~~t~~ 262 (595)
++.||++.|+|.|.+|++++..|...|. +|.+++|+..........+.. .++.++++++|+|+.++|.. +....
T Consensus 114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~ 193 (277)
T 3don_A 114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS 193 (277)
T ss_dssp TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence 5789999999999999999999999998 899999876332111112222 24667788999999999964 22222
Q ss_pred cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
.+. .+.++++.+++|+.-... .+.-+.+|-+.|
T Consensus 194 ~l~---~~~l~~~~~V~D~vY~P~-~T~ll~~A~~~G 226 (277)
T 3don_A 194 VIS---LNRLASHTLVSDIVYNPY-KTPILIEAEQRG 226 (277)
T ss_dssp SSC---CTTCCSSCEEEESCCSSS-SCHHHHHHHHTT
T ss_pred CCC---HHHcCCCCEEEEecCCCC-CCHHHHHHHHCc
Confidence 232 355789999999986643 333333343444
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.84 E-value=5e-05 Score=78.59 Aligned_cols=89 Identities=20% Similarity=0.353 Sum_probs=67.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhc-CC-CEEEEECCCCcHHHHHH----cCCc--ccCHHHhccccCEEEEeCCCChhccc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKG-LG-MNVIAHDPYAQADRARA----TGVG--LVSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~~~a~~----~g~~--~~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
..++++|||.|.+|+.+++.+.. ++ -+|.+||++.....+.+ .|+. ..++++++++||+|++|+|.. ..
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~---~p 196 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRST---TP 196 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCS---SC
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCC---Cc
Confidence 35799999999999999999875 44 58999999832233322 3553 348999999999999999963 35
Q ss_pred cccHHHHhcCCCceEEEeccCCc
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~ 285 (595)
++.. +.+|+|+.+++++...
T Consensus 197 vl~~---~~l~~G~~V~~vGs~~ 216 (313)
T 3hdj_A 197 LFAG---QALRAGAFVGAIGSSL 216 (313)
T ss_dssp SSCG---GGCCTTCEEEECCCSS
T ss_pred ccCH---HHcCCCcEEEECCCCC
Confidence 5553 3589999999998643
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.3e-05 Score=70.91 Aligned_cols=89 Identities=17% Similarity=0.327 Sum_probs=62.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-----C---HHHh-ccccCEEEEeCCCChhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-----S---FEEA-ISTADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----~---l~el-l~~aD~V~l~~Plt~~t~~ 262 (595)
+++.|+|+|.+|+.+|+.|+..|++|+++|++.. .+.+.+.|+..+ + |.++ +.++|+|++++|...++..
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~ 87 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGE 87 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHH
Confidence 4689999999999999999999999999998763 344555676432 2 2222 5789999999996554443
Q ss_pred cccHHHHhcCCCceEEEeccC
Q 046427 263 MFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~ar 283 (595)
++ ..+..+.++..+|--.+
T Consensus 88 ~~--~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 88 IV--ASARAKNPDIEIIARAH 106 (140)
T ss_dssp HH--HHHHHHCSSSEEEEEES
T ss_pred HH--HHHHHHCCCCeEEEEEC
Confidence 33 23444556666664433
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=3.3e-05 Score=71.00 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=62.0
Q ss_pred ceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHH-HcCCccc-----C---HHHh-ccccCEEEEeC
Q 046427 186 VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRAR-ATGVGLV-----S---FEEA-ISTADFISLHM 254 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~-~~g~~~~-----~---l~el-l~~aD~V~l~~ 254 (595)
+.....++++.|+|+|.+|+.+|+.|+..|.+|+++|++.. .+.+. ..|+..+ + +.+. +.++|+|++++
T Consensus 13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~ 92 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT 92 (155)
T ss_dssp ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence 45567889999999999999999999999999999998763 22233 3454321 2 3333 67899999999
Q ss_pred CCChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 255 PLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 255 Plt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
|....+. .+ ......+.+...++-..++.
T Consensus 93 ~~~~~~~-~~-~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 93 NDDSTNF-FI-SMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp SCHHHHH-HH-HHHHHHTSCCSEEEEECSSG
T ss_pred CCcHHHH-HH-HHHHHHHCCCCeEEEEECCH
Confidence 8533222 21 22333344445555555444
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.75 E-value=7.7e-05 Score=76.75 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=76.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc---------------cCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL---------------VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~---------------~~l~ell~~aD~V~l~~Plt 257 (595)
++|+|||.|.||..+|..|...|.+|..|++.. .+...+.|+.. .+.++ ++.+|+|++++|..
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~ 80 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD-YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTF 80 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT-HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc-HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCC
Confidence 579999999999999999999999999999875 34444445321 13444 67999999999944
Q ss_pred hhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEE
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQA 304 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga 304 (595)
.+...+. ..-..++++.+||.+.-| +-.++.+.+.+...++.++
T Consensus 81 -~~~~~l~-~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~~ 124 (312)
T 3hn2_A 81 -ANSRYEE-LIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIGG 124 (312)
T ss_dssp -GGGGHHH-HHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEEE
T ss_pred -CcHHHHH-HHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 3555542 333457889999998876 3236677777776666443
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.73 E-value=4.8e-05 Score=76.32 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=72.9
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHHc----C-CcccCHHHhccccCEEEEeCCCC--hhcc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARAT----G-VGLVSFEEAISTADFISLHMPLT--PATS 261 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~----g-~~~~~l~ell~~aD~V~l~~Plt--~~t~ 261 (595)
+.| +++|||.|.+|++++..|...|. +|.++||+.. .++++ + ....++.+.++++|+|+.++|.. ++ .
T Consensus 107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~--ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~-~ 182 (253)
T 3u62_A 107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIE--RAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE-E 182 (253)
T ss_dssp CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHH--HHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC-C
T ss_pred CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH--HHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC-C
Confidence 578 99999999999999999999998 8999998653 23222 1 12336778899999999999963 22 2
Q ss_pred ccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
..+..+. ++++.+++|+.-+ .+.-+.++.+.|
T Consensus 183 ~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G 214 (253)
T 3u62_A 183 LPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG 214 (253)
T ss_dssp CSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred CCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence 2344333 5789999999988 455555555555
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=8.9e-05 Score=77.89 Aligned_cols=91 Identities=20% Similarity=0.209 Sum_probs=66.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHh-cCC-CEEEEECCCCcH--HHHHHc----CC--c-ccCHHHhccccCEEEEeCCCChh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAK-GLG-MNVIAHDPYAQA--DRARAT----GV--G-LVSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~-~~G-~~V~~~d~~~~~--~~a~~~----g~--~-~~~l~ell~~aD~V~l~~Plt~~ 259 (595)
..+++||||.|.+|+.+++.+. ..+ .+|.+||++... ..+... |+ . ..++++++++||+|++|+|.. .
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-~ 206 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-A 206 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-S
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-C
Confidence 4579999999999999998875 344 589999997632 222222 53 2 237999999999999999965 2
Q ss_pred ccccccHHHHhcCCCceEEEeccCCc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
...++.. +.+++|+.+++++...
T Consensus 207 ~~pvl~~---~~l~~G~~V~~vgs~~ 229 (350)
T 1x7d_A 207 YATIITP---DMLEPGMHLNAVGGDC 229 (350)
T ss_dssp EEEEECG---GGCCTTCEEEECSCCB
T ss_pred CCceecH---HHcCCCCEEEECCCCC
Confidence 3445543 4579999999998643
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.69 E-value=6.8e-05 Score=77.45 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=72.9
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCc-------------c-cCHHHhccccCEEEEeC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVG-------------L-VSFEEAISTADFISLHM 254 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~-------------~-~~l~ell~~aD~V~l~~ 254 (595)
...++|+|||.|.||..+|..|...|.+|..| ++. ..+...+.|.. . .++++ ++.+|+|++++
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav 94 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV 94 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence 44578999999999999999999999999999 654 23333344431 1 24444 58999999999
Q ss_pred CCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCee
Q 046427 255 PLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIIS 302 (595)
Q Consensus 255 Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ 302 (595)
|.. .+..++ +.....+++++++|.+.-|= -.++.+.+.+. .++.
T Consensus 95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~~-~~vl 138 (318)
T 3hwr_A 95 KST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLLE-QEVA 138 (318)
T ss_dssp CGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHCC-SEEE
T ss_pred ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHcC-CcEE
Confidence 954 555554 22334578899999987763 23456666665 4443
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00011 Score=65.14 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHH-HcCCccc-----CHHH---h-ccccCEEEEeCCCChhc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRAR-ATGVGLV-----SFEE---A-ISTADFISLHMPLTPAT 260 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~g~~~~-----~l~e---l-l~~aD~V~l~~Plt~~t 260 (595)
+++++|+|+|.+|+.+|+.|...|.+|.++|++... +... ..++... +.+. . ++++|+|++++|.....
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~ 83 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN 83 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence 578999999999999999999999999999987532 2222 2354321 2222 2 67899999999854322
Q ss_pred cccccHHHHhcCCCceEEEec
Q 046427 261 SKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ 281 (595)
. .-......++++.+++-+
T Consensus 84 ~--~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 84 L--MSSLLAKSYGINKTIARI 102 (140)
T ss_dssp H--HHHHHHHHTTCCCEEEEC
T ss_pred H--HHHHHHHHcCCCEEEEEe
Confidence 2 112234446666555533
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00011 Score=65.96 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=49.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-----C---HHHh-ccccCEEEEeCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-----S---FEEA-ISTADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----~---l~el-l~~aD~V~l~~Pl 256 (595)
.++++.|+|+|.+|+.+|+.|...|++|+++|++.. .+...+.++... + +.++ +.++|+|++++|.
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~ 80 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD 80 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCC
Confidence 357899999999999999999999999999998763 334445565321 2 2222 4689999999983
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.56 E-value=8.4e-05 Score=63.95 Aligned_cols=87 Identities=20% Similarity=0.225 Sum_probs=61.0
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCcH-HHHHHcCCcc--------cCHHHhccccCEEEEeCCCChhc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQA-DRARATGVGL--------VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~-~~a~~~g~~~--------~~l~ell~~aD~V~l~~Plt~~t 260 (595)
.+++++|+|.|.||+.+++.+...| ++|+++|++... +.....++.. .++.++++++|+|+.++|... +
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~ 82 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T 82 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence 3578999999999999999999999 899999987632 3333344422 135677889999999998432 2
Q ss_pred cccccHHHHhcCCCceEEEecc
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~a 282 (595)
..++. ...+.|...++.+
T Consensus 83 ~~~~~----~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 83 PIIAK----AAKAAGAHYFDLT 100 (118)
T ss_dssp HHHHH----HHHHTTCEEECCC
T ss_pred HHHHH----HHHHhCCCEEEec
Confidence 22221 1235677777765
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0004 Score=75.06 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=63.8
Q ss_pred CEEEEEeCChHHHHHHHHHhc----------CCCEEEE-ECCCCcHHHHHHcCCc-ccCHHHhcc--ccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKG----------LGMNVIA-HDPYAQADRARATGVG-LVSFEEAIS--TADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~----------~G~~V~~-~d~~~~~~~a~~~g~~-~~~l~ell~--~aD~V~l~~Plt~ 258 (595)
-+|||+|+|.||+.+++.+.. .+.+|.+ +|++.........+.. +.++++++. +.|+|+.|+|...
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~~ 90 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGLE 90 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSST
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCch
Confidence 479999999999999887652 4667665 5765432221112333 347899987 5899999999533
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhc-HHHHHHHHhcCCe
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVD-EEALVRALDSGII 301 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd-~~aL~~aL~~g~i 301 (595)
....++ ...|+.|.-++-.-.+-... .++|.++.++...
T Consensus 91 ~h~~~~----~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv 130 (444)
T 3mtj_A 91 PARELV----MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGV 130 (444)
T ss_dssp THHHHH----HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH----HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCC
Confidence 222222 33456666666544432222 3567776655443
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0001 Score=75.13 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=66.5
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcC----CcccCHHHhccccCEEEEeCCCChhc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATG----VGLVSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g----~~~~~l~ell~~aD~V~l~~Plt~~t 260 (595)
.++.||++.|+|.|.+|++++..|...|. +|.++++.... +.+.+.+ +...+++++.+++|+|+.++|..-..
T Consensus 122 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~ 201 (281)
T 3o8q_A 122 VLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDG 201 (281)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC--
T ss_pred CCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCC
Confidence 45889999999999999999999999996 99999987532 2222222 33446777778999999999975321
Q ss_pred c-ccccHHHHhcCCCceEEEeccCCc
Q 046427 261 S-KMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 261 ~-~li~~~~l~~mk~gailiN~arg~ 285 (595)
. -.+.. +.++++.+++|+.-..
T Consensus 202 ~~~~l~~---~~l~~~~~V~DlvY~P 224 (281)
T 3o8q_A 202 ELPAIDP---VIFSSRSVCYDMMYGK 224 (281)
T ss_dssp --CSCCG---GGEEEEEEEEESCCCS
T ss_pred CCCCCCH---HHhCcCCEEEEecCCC
Confidence 1 12322 3356777777776543
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00026 Score=76.46 Aligned_cols=133 Identities=20% Similarity=0.180 Sum_probs=79.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHH--------------------cC-Ccc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARA--------------------TG-VGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~--------------------~g-~~~-~~l~ell~~aD~V 250 (595)
++|+|||+|-+|..+|..+...|++|++||.+...-.... .| ..+ .+.++.+++||++
T Consensus 22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~~ 101 (444)
T 3vtf_A 22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDAT 101 (444)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSEE
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCce
Confidence 5899999999999999999999999999997643211111 11 122 2577889999999
Q ss_pred EEeCCCChhccc-------ccc--HHHHhcCC---CceEEEeccCCchhcHHHHH-HHHhcCCeeEEEEe-cCCCCCCCC
Q 046427 251 SLHMPLTPATSK-------MFN--DEAFFKMK---KGVRIVNVARGGVVDEEALV-RALDSGIISQAALD-VFTEEPPAK 316 (595)
Q Consensus 251 ~l~~Plt~~t~~-------li~--~~~l~~mk---~gailiN~arg~~vd~~aL~-~aL~~g~i~ga~lD-v~~~EP~~~ 316 (595)
++|+| ||...+ +.. +..-..|+ +|.++|.-|+-.+=..+.+. ..+.+..- |.-.+ +|.+|-+.+
T Consensus 102 ~I~Vp-TP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~-~~~f~v~~~PErl~e 179 (444)
T 3vtf_A 102 FIAVG-TPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAG-GVKFSVASNPEFLRE 179 (444)
T ss_dssp EECCC-CCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTT-TCCCEEEECCCCCCT
T ss_pred EEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCC-CCCceeecCcccccC
Confidence 99999 442221 111 11222343 67899998876554433333 33333211 11111 255665543
Q ss_pred Cc---ccccCCcEE
Q 046427 317 DS---KLVLHENVT 327 (595)
Q Consensus 317 ~~---~L~~~~nvi 327 (595)
.+ .++..++++
T Consensus 180 G~a~~d~~~~~riV 193 (444)
T 3vtf_A 180 GSALEDFFKPDRIV 193 (444)
T ss_dssp TSHHHHHHSCSCEE
T ss_pred CccccccccCCcEE
Confidence 33 345566765
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00026 Score=73.41 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=63.3
Q ss_pred cCCEEEEEeCChHHHHHHHHHhc-CC-CEEEEECCCCcH--HHHHHc-----CCcccCHHHhccccCEEEEeCCCChhcc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKG-LG-MNVIAHDPYAQA--DRARAT-----GVGLVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~--~~a~~~-----g~~~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
..++++|||+|.+|+.+++.+.. ++ .+|.+||++... ..+.+. .+...++++++ ++|+|++|+|.. .
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~---~ 199 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSR---K 199 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCS---S
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCC---C
Confidence 45799999999999999998875 43 589999997632 222221 12334789999 999999999953 3
Q ss_pred ccccHHHHhcCCCceEEEeccCC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg 284 (595)
.++.. ..+++|+.+++++..
T Consensus 200 pv~~~---~~l~~G~~V~~ig~~ 219 (322)
T 1omo_A 200 PVVKA---EWVEEGTHINAIGAD 219 (322)
T ss_dssp CCBCG---GGCCTTCEEEECSCC
T ss_pred ceecH---HHcCCCeEEEECCCC
Confidence 45543 357899988888643
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=9.7e-05 Score=65.82 Aligned_cols=94 Identities=15% Similarity=0.226 Sum_probs=58.3
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCcc-----cC---HHHh-ccccCEEEEeCCCChh
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGL-----VS---FEEA-ISTADFISLHMPLTPA 259 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~-----~~---l~el-l~~aD~V~l~~Plt~~ 259 (595)
+.++++.|+|+|.+|+.+++.+...|++|+++|++... +...+.+... .+ +.++ +.++|+|+.++|...+
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 83 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence 56788999999999999999999999999999986422 2222234321 12 2333 6789999999986422
Q ss_pred ccccccHHHHhcCCCceEEEeccCCc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
+. +.-......+.+. .++-...+.
T Consensus 84 ~~-~~~~~~~~~~~~~-~ii~~~~~~ 107 (144)
T 2hmt_A 84 AS-TLTTLLLKELDIP-NIWVKAQNY 107 (144)
T ss_dssp HH-HHHHHHHHHTTCS-EEEEECCSH
T ss_pred HH-HHHHHHHHHcCCC-eEEEEeCCH
Confidence 21 1112233445565 444444443
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00018 Score=73.93 Aligned_cols=105 Identities=18% Similarity=0.138 Sum_probs=70.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccC----------H-HHhccccCEEEEeCCCChhc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVS----------F-EEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~----------l-~ell~~aD~V~l~~Plt~~t 260 (595)
++|+|||.|.||..+|..|. .|.+|..+++.. ..+...+.|+...+ . .+....+|+|++++|.. ++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~ 80 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL 80 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence 58999999999999999999 899999999875 33444455653221 1 34577899999999943 35
Q ss_pred cccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
...+ +.++.+.++. ||.+.-|= -.++.+.+.+...++.+
T Consensus 81 ~~~l--~~l~~~~~~~-ivs~~nGi-~~~e~l~~~~~~~~vl~ 119 (307)
T 3ego_A 81 QSVF--SSLERIGKTN-ILFLQNGM-GHIHDLKDWHVGHSIYV 119 (307)
T ss_dssp HHHH--HHTTSSCCCE-EEECCSSS-HHHHHHHTCCCSCEEEE
T ss_pred HHHH--HHhhcCCCCe-EEEecCCc-cHHHHHHHhCCCCcEEE
Confidence 4444 2334445666 78776653 23445555555555433
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0011 Score=76.22 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=107.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH---------------cCC-------cccCHHHhccccCE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA---------------TGV-------GLVSFEEAISTADF 249 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~---------------~g~-------~~~~l~ell~~aD~ 249 (595)
++|||||.|.||+.+|..+...|++|+.+|..... +.+.+ ... ...+-.+.+++||+
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDl 396 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDL 396 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCSE
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCCE
Confidence 68999999999999999999999999999987521 11100 000 11222345889999
Q ss_pred EEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEc
Q 046427 250 ISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVT 329 (595)
Q Consensus 250 V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilT 329 (595)
|+=++|..-+.+.-+-++.=+.++++++|-...++ +....|.++++.- =.-+++.-|.+-| .-||.+ ||-+
T Consensus 397 VIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~~p-~r~ig~HFfnP~~---~m~LVE---vi~g 467 (742)
T 3zwc_A 397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDRP-QLVIGTHFFSPAH---VMRLLE---VIPS 467 (742)
T ss_dssp EEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSCG-GGEEEEECCSSTT---TCCEEE---EEEC
T ss_pred EEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcCCc-cccccccccCCCC---CCceEE---EecC
Confidence 99999988877766656555668999988765443 3555566665432 2237777776432 346764 7777
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 330 PHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 330 PHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
++.+ .| +.+.+.+|.+...-..++. -..+-...+.+. ||+.-|.++
T Consensus 468 ~~Ts---~e--------~~~~~~~~~~~lgK~pV~v-kd~pGFi~NRi~~~~~~ea~~l 514 (742)
T 3zwc_A 468 RYSS---PT--------TIATVMSLSKKIGKIGVVV-GNCYGFVGNRMLAPYYNQGFFL 514 (742)
T ss_dssp SSCC---HH--------HHHHHHHHHHHTTCEEEEC-CCSTTTTHHHHHHHHHHHHHHH
T ss_pred CCCC---HH--------HHHHHHHHHHHhCCCCccc-CCCCCccHHHHhhHHHHHHHHH
Confidence 7642 22 3333334433222222222 233345555554 777666655
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00018 Score=76.58 Aligned_cols=87 Identities=23% Similarity=0.190 Sum_probs=61.0
Q ss_pred CEEEEEeCChHHHHHHHHHhc-CCCEEEEEC---CCCc-HHH-HHHcC------------C------c-c-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKG-LGMNVIAHD---PYAQ-ADR-ARATG------------V------G-L-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~~d---~~~~-~~~-a~~~g------------~------~-~-~~l~ell~~ 246 (595)
++|+|||.|.||..+|..|.. .|.+|.+|| ++.. .+. ..+.| . . . .+++++++.
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG 82 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence 479999999999999999987 599999999 4321 122 12212 1 1 1 257888999
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
||+|++++|.. ....++ ++....++++++|+..
T Consensus 83 aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 83 ADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL 115 (404)
T ss_dssp CSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred CCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence 99999999943 344444 2233457888999884
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00036 Score=70.38 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=64.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHcC----CcccCHHHhc-cccCEEEEeCCCChhcc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARATG----VGLVSFEEAI-STADFISLHMPLTPATS 261 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----~~~~~l~ell-~~aD~V~l~~Plt~~t~ 261 (595)
.+.||++.|+|.|.+|+++|+.|...|.+|+++|++... +.+.+.+ +...+++++. .++|+|+.++|.... .
T Consensus 116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~ 194 (271)
T 1nyt_A 116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-G 194 (271)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-T
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-C
Confidence 578999999999999999999999999999999987532 2222322 1223444544 589999999996442 1
Q ss_pred cc--ccHHHHhcCCCceEEEeccCCc
Q 046427 262 KM--FNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 262 ~l--i~~~~l~~mk~gailiN~arg~ 285 (595)
.+ +.. ..++++.+++|+.-..
T Consensus 195 ~~~~i~~---~~l~~~~~v~D~~y~p 217 (271)
T 1nyt_A 195 DIPAIPS---SLIHPGIYCYDMFYQK 217 (271)
T ss_dssp CCCCCCG---GGCCTTCEEEESCCCS
T ss_pred CCCCCCH---HHcCCCCEEEEeccCC
Confidence 11 222 2256778888877654
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00043 Score=71.46 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=52.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEE-EECCCCcH--HHHHHcCCcccCHHHhcc--ccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVI-AHDPYAQA--DRARATGVGLVSFEEAIS--TADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~~~~l~ell~--~aD~V~l~~Plt 257 (595)
.+|||||+|.||+..++.++.. +++++ ++|++... ..+...|+.+.+++++++ ++|+|++|+|..
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~ 74 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVICTPTD 74 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHHCTTCCEEEECSCGG
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhcCCCCCEEEEeCCch
Confidence 4799999999999999999875 78877 58987632 334556777568999998 899999999943
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00017 Score=72.83 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=51.4
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHcC----CcccCHHHhcc-ccCEEEEeCCCCh
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARATG----VGLVSFEEAIS-TADFISLHMPLTP 258 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----~~~~~l~ell~-~aD~V~l~~Plt~ 258 (595)
.+.||+++|+|.|.+|+++|..|...|.+|.++|++... +.+.+.+ +...+++++.+ ++|+|+.++|...
T Consensus 116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~ 192 (272)
T 1p77_A 116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL 192 (272)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCC
Confidence 578999999999999999999999999999999987532 2222221 22234555544 8999999999643
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00035 Score=72.04 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=66.2
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHH------H---c--C--Ccc-cCHHHhccccCEEEEeCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRAR------A---T--G--VGL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~------~---~--g--~~~-~~l~ell~~aD~V~l~~Pl 256 (595)
.++|+|||.|.||..+|..+...|+ +|..||+........ . . . +.. .++ +.+++||+|+++++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~ 82 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI 82 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 3689999999999999999998887 999999876321110 0 0 1 222 356 788999999999942
Q ss_pred Ch-----------hcccccc--HHHHhcCCCceEEEeccCCchhcHHHHHHHH
Q 046427 257 TP-----------ATSKMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRAL 296 (595)
Q Consensus 257 t~-----------~t~~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~aL 296 (595)
.. ++..++. .+.+....+++++++++-..-+....+.+..
T Consensus 83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~ 135 (317)
T 2ewd_A 83 PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS 135 (317)
T ss_dssp SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence 11 1111110 0122334578999998865444445555543
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0013 Score=69.42 Aligned_cols=111 Identities=25% Similarity=0.261 Sum_probs=81.9
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC----Cc----------HHHHHHcCC--cccCHHHhccccCE
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY----AQ----------ADRARATGV--GLVSFEEAISTADF 249 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~----~~----------~~~a~~~g~--~~~~l~ell~~aD~ 249 (595)
|..+.+.+|.|+|.|..|..+|+.+.+.|. +|+.+|+. .. ...+.+.+. ...+|.|.++++|+
T Consensus 187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV 266 (388)
T 1vl6_A 187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF 266 (388)
T ss_dssp TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence 446889999999999999999999999998 89999987 21 112222221 13479999999999
Q ss_pred EEEeCCCChhccccccHHHHhcCCCceEEEeccCCch-hcHHHHHHHHhcC-CeeEEE
Q 046427 250 ISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV-VDEEALVRALDSG-IISQAA 305 (595)
Q Consensus 250 V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~-vd~~aL~~aL~~g-~i~ga~ 305 (595)
++-+.- -+++.++.++.|+++++|+.+|+-.. +..++.+++ | .|.+.|
T Consensus 267 lIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~E~~p~~a~~~---g~~i~atG 316 (388)
T 1vl6_A 267 FIGVSR-----GNILKPEWIKKMSRKPVIFALANPVPEIDPELAREA---GAFIVATG 316 (388)
T ss_dssp EEECSC-----SSCSCHHHHTTSCSSCEEEECCSSSCSSCHHHHHHT---TCSEEEES
T ss_pred EEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCCCCCCHHHHHHh---cCeEEEeC
Confidence 987741 38999999999999999999996432 133333444 5 454444
|
| >2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00043 Score=64.78 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=59.7
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceEEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v~~i 593 (595)
|.|-+...|+||++++|+.+|+++|+||.++.+...+..+.+.+.+.++.. .-+.+.++|.++++|.+|.-+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~ 77 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL 77 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEc
Confidence 677788899999999999999999999999999876655678887777644 334888889999999888643
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00063 Score=70.65 Aligned_cols=65 Identities=23% Similarity=0.397 Sum_probs=51.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEE-EECCCCcH--HHHHHcCCc-ccCHHHhcc--ccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVI-AHDPYAQA--DRARATGVG-LVSFEEAIS--TADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~-~~~l~ell~--~aD~V~l~~Plt 257 (595)
.+|||||+|.||+.+++.++.. +++++ ++|++... ..+.+.|+. +.+++++++ ++|+|++|+|..
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~ 76 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTS 76 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGG
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCch
Confidence 3799999999999999999875 78877 58887632 234455654 348999998 899999999943
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00067 Score=70.75 Aligned_cols=66 Identities=9% Similarity=0.177 Sum_probs=51.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEE-EECCCCcH--HHHHHcCCcc-cCHHHhc--cccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVI-AHDPYAQA--DRARATGVGL-VSFEEAI--STADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~~-~~l~ell--~~aD~V~l~~Plt~ 258 (595)
.+|||||+|.||+..++.++.. +++++ ++|++... ..+.+.|+.. .++++++ .+.|+|++|+|...
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~ 78 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDK 78 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTS
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHH
Confidence 4799999999999999999977 78866 67887632 2345567654 4899999 66999999999543
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00035 Score=71.74 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=47.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcH-H-HHHHc---------CCcc--cCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQA-D-RARAT---------GVGL--VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~-~-~a~~~---------g~~~--~~l~ell~~aD~V~l~~Plt 257 (595)
++|+|||.|.||..+|..+...| .+|..||++... + .+... .+.. .++ +.+++||+|++++|..
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~ 80 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence 47999999999999999998777 699999987521 1 11111 1222 356 7789999999999953
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00079 Score=69.58 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=47.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcH-HH-HH--Hc------C--CcccCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQA-DR-AR--AT------G--VGLVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~-~~-a~--~~------g--~~~~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+|||.|.||..+|..+...|+ +|..||+.... +. .. .. . +...+ .+.+++||+|++++|...
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence 479999999999999999988888 99999987521 11 11 11 1 11124 356799999999999533
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00023 Score=75.51 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=68.5
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhcCCC---EEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 192 GKTLAVMGF-GKVGTEVARRAKGLGM---NVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 192 gktvGIIGl-G~IG~~vA~~l~~~G~---~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
.-+|.|||. |+.|..-++.++++|. .|..+|.+.. ..|-. + +.+.++|+|+.|+......-.++.++
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~-----~~g~~---~-~~i~~aDivIn~vlig~~aP~Lvt~e 284 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKET-----SRGGP---F-DEIPQADIFINCIYLSKPIAPFTNME 284 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHH-----TTCSC---C-THHHHSSEEEECCCCCSSCCCSCCHH
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccc-----ccCCc---h-hhHhhCCEEEECcCcCCCCCcccCHH
Confidence 557899999 9999999999999998 8999997531 11332 2 34669999999999866677899999
Q ss_pred HHhcC-CCceEEEecc
Q 046427 268 AFFKM-KKGVRIVNVA 282 (595)
Q Consensus 268 ~l~~m-k~gailiN~a 282 (595)
.++.| |||++|||++
T Consensus 285 ~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 285 KLNNPNRRLRTVVDVS 300 (394)
T ss_dssp HHCCTTCCCCEEEETT
T ss_pred HHhcCcCCCeEEEEEe
Confidence 99999 9999999997
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00072 Score=68.46 Aligned_cols=95 Identities=9% Similarity=0.082 Sum_probs=64.0
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcC---CcccCHHHhc-cccCEEEEeCCCChh
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATG---VGLVSFEEAI-STADFISLHMPLTPA 259 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g---~~~~~l~ell-~~aD~V~l~~Plt~~ 259 (595)
+.++.||++.|+|.|.+|++++..|...|. +|.+++++... +.+.+.+ +...+++++- .++|+|+.++|..-.
T Consensus 115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~ 194 (272)
T 3pwz_A 115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLT 194 (272)
T ss_dssp CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGG
T ss_pred CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCC
Confidence 346889999999999999999999999996 99999997632 2233333 2334555554 789999999986421
Q ss_pred cc-ccccHHHHhcCCCceEEEeccCC
Q 046427 260 TS-KMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 260 t~-~li~~~~l~~mk~gailiN~arg 284 (595)
.. -.+.. +.++++.+++|+.-.
T Consensus 195 ~~~~~i~~---~~l~~~~~V~DlvY~ 217 (272)
T 3pwz_A 195 ADLPPLPA---DVLGEAALAYELAYG 217 (272)
T ss_dssp TCCCCCCG---GGGTTCSEEEESSCS
T ss_pred CCCCCCCH---HHhCcCCEEEEeecC
Confidence 11 11222 234566666666543
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00087 Score=68.98 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=46.9
Q ss_pred CEEEEEeCChHHHHHHHHHhc--CCCEEEEECCCCcHHHHH----Hc-------C--Ccc-cCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKG--LGMNVIAHDPYAQADRAR----AT-------G--VGL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~----~~-------g--~~~-~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|||.|.+|..+|..+.. +|.+|..||++....... .. . +.. .++++ +++||+|++++|.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 379999999999999999885 589999999876321111 11 1 112 35666 8999999999984
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=68.32 Aligned_cols=102 Identities=13% Similarity=0.208 Sum_probs=64.1
Q ss_pred EEEEEeCChHHH-HHHHHHhcC-CCEEEEECCCCcH--HHHHHcCCc--ccCHHHhc-cccCEEEEeCCCChhccccccH
Q 046427 194 TLAVMGFGKVGT-EVARRAKGL-GMNVIAHDPYAQA--DRARATGVG--LVSFEEAI-STADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 194 tvGIIGlG~IG~-~vA~~l~~~-G~~V~~~d~~~~~--~~a~~~g~~--~~~l~ell-~~aD~V~l~~Plt~~t~~li~~ 266 (595)
+|||||+|.||+ .+++.++.. +.+++++|++... ..+.+.|+. +.+..+++ .++|+|++|+|... ...++
T Consensus 4 ~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~-h~~~~-- 80 (323)
T 1xea_A 4 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDV-HSTLA-- 80 (323)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGG-HHHHH--
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchh-HHHHH--
Confidence 799999999998 489988765 7888899987632 234556765 34555666 78999999999322 22222
Q ss_pred HHHhcCCCce-EEEec-cCCchhcHHHHHHHHhcCC
Q 046427 267 EAFFKMKKGV-RIVNV-ARGGVVDEEALVRALDSGI 300 (595)
Q Consensus 267 ~~l~~mk~ga-iliN~-arg~~vd~~aL~~aL~~g~ 300 (595)
...++.|. +++.- .--.+-+.+.|.++.++..
T Consensus 81 --~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g 114 (323)
T 1xea_A 81 --AFFLHLGIPTFVDKPLAASAQECENLYELAEKHH 114 (323)
T ss_dssp --HHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTT
T ss_pred --HHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcC
Confidence 22344554 55542 1122334556777666544
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00085 Score=68.45 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=65.7
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+. +|+.+|..|...++.|..+.... .+|.+.+++||+|+.++.. .+++
T Consensus 173 ~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T------------~dl~~~~~~ADIvV~A~G~----p~~i 236 (303)
T 4b4u_A 173 NNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT------------QNLPELVKQADIIVGAVGK----AELI 236 (303)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHHTCSEEEECSCS----TTCB
T ss_pred HCCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC------------CCHHHHhhcCCeEEeccCC----CCcc
Confidence 35689999999999865 69999999999999999886532 2688999999999999863 4577
Q ss_pred cHHHHhcCCCceEEEeccC
Q 046427 265 NDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~ar 283 (595)
..+. .|+|+++||++-
T Consensus 237 ~~d~---vk~GavVIDVGi 252 (303)
T 4b4u_A 237 QKDW---IKQGAVVVDAGF 252 (303)
T ss_dssp CGGG---SCTTCEEEECCC
T ss_pred cccc---ccCCCEEEEece
Confidence 7654 699999999984
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00097 Score=68.09 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=66.0
Q ss_pred CEEEEEeCChHHHH-HHHHHhc-CCCEEE-EECCCCcH--HHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTE-VARRAKG-LGMNVI-AHDPYAQA--DRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~-vA~~l~~-~G~~V~-~~d~~~~~--~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
.++||||+|.||+. +++.++. -++++. ++|++... ..+.+.|+. +.+++++++++|+|++|+|... ...++
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~-h~~~~-- 83 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTET-HYEII-- 83 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGG-HHHHH--
T ss_pred CcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHh-HHHHH--
Confidence 58999999999996 8888876 478887 58987632 334556765 4589999999999999999432 22222
Q ss_pred HHHhcCCCce-EEEe-ccCCchhcHHHHHHHHhcC
Q 046427 267 EAFFKMKKGV-RIVN-VARGGVVDEEALVRALDSG 299 (595)
Q Consensus 267 ~~l~~mk~ga-iliN-~arg~~vd~~aL~~aL~~g 299 (595)
...++.|. +++. ..--.+-+.++|.++.++.
T Consensus 84 --~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (308)
T 3uuw_A 84 --KILLNLGVHVYVDKPLASTVSQGEELIELSTKK 116 (308)
T ss_dssp --HHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHH
T ss_pred --HHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 12233443 4433 2222333455666665553
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00094 Score=69.06 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=51.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEE-EECCCCcH--HHHHHcCCc--ccCHHHhcc--ccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVI-AHDPYAQA--DRARATGVG--LVSFEEAIS--TADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~--~~~l~ell~--~aD~V~l~~Plt 257 (595)
.+|||||+|.||+.+++.++.. ++++. ++|++... ..+.+.|+. +.++++++. ++|+|++|+|..
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 78 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQ 78 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGG
T ss_pred EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCH
Confidence 4899999999999999999874 67877 57887632 334556763 458999998 899999999943
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0013 Score=67.38 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=66.8
Q ss_pred CEEEEEeCChHHHH-HHHHHhc-CCCEEE-EECCCCcH--HHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTE-VARRAKG-LGMNVI-AHDPYAQA--DRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~-vA~~l~~-~G~~V~-~~d~~~~~--~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
.+|||||+|.||+. +++.++. -++++. ++|++... ..+...|+.. .+++++..++|+|++|+|... ...++
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~-h~~~~-- 82 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTAS-HFDVV-- 82 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTH-HHHHH--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchh-HHHHH--
Confidence 47999999999997 8888875 478876 78887632 3344557653 367777678999999999533 22222
Q ss_pred HHHhcCCCce-EEEec-cCCchhcHHHHHHHHhcCCe
Q 046427 267 EAFFKMKKGV-RIVNV-ARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 267 ~~l~~mk~ga-iliN~-arg~~vd~~aL~~aL~~g~i 301 (595)
...++.|. +++.- .-..+-+.+.|.++.++..+
T Consensus 83 --~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~ 117 (319)
T 1tlt_A 83 --STLLNAGVHVCVDKPLAENLRDAERLVELAARKKL 117 (319)
T ss_dssp --HHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred --HHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 22345564 55542 22234455667777665543
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0012 Score=68.58 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=50.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEE-EECCCCcH--HHHHHcCCc--ccCHHHhcc--ccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVI-AHDPYAQA--DRARATGVG--LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~--~~~l~ell~--~aD~V~l~~Pl 256 (595)
.+|||||+|.||+..++.++.. +++++ ++|++... ..+...|+. +.+++++++ ++|+|++|+|.
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 74 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSST 74 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCC
Confidence 3799999999999999999865 67877 57887632 334556763 458999998 89999999994
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0011 Score=68.37 Aligned_cols=101 Identities=16% Similarity=0.220 Sum_probs=64.1
Q ss_pred EEEEEeCChHHHHH-HHHHhcCCCEEE-EECCCCcH--HHHHHcCCc--ccCHHHhcc--ccCEEEEeCCCChhcccccc
Q 046427 194 TLAVMGFGKVGTEV-ARRAKGLGMNVI-AHDPYAQA--DRARATGVG--LVSFEEAIS--TADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 194 tvGIIGlG~IG~~v-A~~l~~~G~~V~-~~d~~~~~--~~a~~~g~~--~~~l~ell~--~aD~V~l~~Plt~~t~~li~ 265 (595)
+|||||+|.||+.+ ++.++..+++++ ++|++... ..+.+.|+. +.+++++++ ++|+|++++|... ...+
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~-h~~~-- 78 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNEL-HREQ-- 78 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGG-HHHH--
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhH-hHHH--
Confidence 79999999999998 777766778876 57887632 234555663 348999987 5999999999422 1111
Q ss_pred HHHHhcCCCce-EEEec-cCCchhcHHHHHHHHhcC
Q 046427 266 DEAFFKMKKGV-RIVNV-ARGGVVDEEALVRALDSG 299 (595)
Q Consensus 266 ~~~l~~mk~ga-iliN~-arg~~vd~~aL~~aL~~g 299 (595)
....++.|. +++.- .....-+.++|.++.++.
T Consensus 79 --~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~ 112 (332)
T 2glx_A 79 --TLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREA 112 (332)
T ss_dssp --HHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHc
Confidence 222345564 44432 122333445666665543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00057 Score=62.35 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=57.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH---HHH--HHcCCccc--------CHHHh-ccccCEEEEeCCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA---DRA--RATGVGLV--------SFEEA-ISTADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a--~~~g~~~~--------~l~el-l~~aD~V~l~~Plt 257 (595)
.+++.|+|+|.+|+.+++.|...|.+|+++|++... ... ...|+... .+.++ +.++|+|+++++..
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence 467999999999999999999999999999986421 111 12244321 24454 78999999999854
Q ss_pred hhccccccHHHHhcCCCceEEEeccC
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
+.+ +.-......+.+...++...+
T Consensus 83 ~~n--~~~~~~a~~~~~~~~ii~~~~ 106 (153)
T 1id1_A 83 ADN--AFVVLSAKDMSSDVKTVLAVS 106 (153)
T ss_dssp HHH--HHHHHHHHHHTSSSCEEEECS
T ss_pred HHH--HHHHHHHHHHCCCCEEEEEEC
Confidence 322 222333444544444444333
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0012 Score=60.22 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=70.6
Q ss_pred CCEEEEEeC----ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccH
Q 046427 192 GKTLAVMGF----GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 192 gktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
-++|+|||. |++|..+++.++..|++|+..+|... .-.|+... +++++....|++++++|. +....++.+
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~----~i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~~ 96 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE----EVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVEQ 96 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS----EETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCC----eECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHHH
Confidence 579999999 79999999999999999887877541 11355543 799999899999999995 556666643
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
..+ ....++++..+ . .++++.++.++..+
T Consensus 97 -~~~-~gi~~i~~~~g--~--~~~~l~~~a~~~Gi 125 (144)
T 2d59_A 97 -AIK-KGAKVVWFQYN--T--YNREASKKADEAGL 125 (144)
T ss_dssp -HHH-HTCSEEEECTT--C--CCHHHHHHHHHTTC
T ss_pred -HHH-cCCCEEEECCC--c--hHHHHHHHHHHcCC
Confidence 333 33345665532 2 25667777776544
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0014 Score=68.72 Aligned_cols=64 Identities=22% Similarity=0.398 Sum_probs=51.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEEE-ECCCCc-HHHHHHcCCcc-cCHHHhcc--ccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVIA-HDPYAQ-ADRARATGVGL-VSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~-~~~a~~~g~~~-~~l~ell~--~aD~V~l~~Pl 256 (595)
.+|||||+|.||+..++.++.. ++++.+ +|++.. .+.+.+.|+.. .+++++++ +.|+|++|+|.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~ 75 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPN 75 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCG
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 4799999999999999999876 788764 688763 23445567754 48999998 79999999994
|
| >2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00066 Score=63.51 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=59.5
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceEEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v~~i 593 (595)
|.|-+...|+||++++|+.+|+++|+||.++.++..+..+.+.+.+.++.. .-+.+.++|.++.+|.+|.-+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~ 78 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDL 78 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 677788899999999999999999999999999877666677776666543 344788888999999888643
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0013 Score=59.85 Aligned_cols=102 Identities=21% Similarity=0.286 Sum_probs=70.8
Q ss_pred cCCEEEEEeC----ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc
Q 046427 191 VGKTLAVMGF----GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 191 ~gktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+-++|+|||. |++|..+++.++..|++|+..+|....+ .-.|+... +++|+-...|++++++|. +....+++
T Consensus 12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~--~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~ 88 (140)
T 1iuk_A 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE--ELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP 88 (140)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS--EETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccC--cCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH
Confidence 3568999999 8999999999999999988777752011 11355543 799998899999999995 66777774
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+ ..+ .....++++.+-. ++++.+..++..+
T Consensus 89 ~-~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gi 118 (140)
T 1iuk_A 89 E-VLA-LRPGLVWLQSGIR----HPEFEKALKEAGI 118 (140)
T ss_dssp H-HHH-HCCSCEEECTTCC----CHHHHHHHHHTTC
T ss_pred H-HHH-cCCCEEEEcCCcC----HHHHHHHHHHcCC
Confidence 3 333 3334566664332 4566666665544
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00068 Score=70.72 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=51.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--CCEEE-EECCCCcH--HHHHHcCCcc-cCHHHhcc--ccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--GMNVI-AHDPYAQA--DRARATGVGL-VSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~~-~~l~ell~--~aD~V~l~~Pl 256 (595)
.+|||||+|.||+..++.++.. +++++ ++|++... ..+.+.|+.. .+++++++ ++|+|++|+|.
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 85 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPS 85 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCc
Confidence 4799999999999999999876 78866 68887632 3345567743 48999997 79999999994
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00087 Score=68.09 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=65.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHcC----------CcccCHHHhccccCEEEEeCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARATG----------VGLVSFEEAISTADFISLHMPL 256 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----------~~~~~l~ell~~aD~V~l~~Pl 256 (595)
++.||++.|+|.|.||+++|+.|...| +|+++|++... +.+.+.+ +...++.+.+.++|+|+.++|.
T Consensus 125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~ 203 (287)
T 1nvt_A 125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI 203 (287)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCC
Confidence 578999999999999999999999999 99999987522 1111111 1122345677899999999986
Q ss_pred Chhcc---ccccHHHHhcCCCceEEEeccCCc
Q 046427 257 TPATS---KMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 257 t~~t~---~li~~~~l~~mk~gailiN~arg~ 285 (595)
..... ..+. ..+.++++.+++|+.-..
T Consensus 204 ~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p 233 (287)
T 1nvt_A 204 GMYPNIDVEPIV--KAEKLREDMVVMDLIYNP 233 (287)
T ss_dssp TCTTCCSSCCSS--CSTTCCSSSEEEECCCSS
T ss_pred CCCCCCCCCCCC--CHHHcCCCCEEEEeeeCC
Confidence 43210 0120 134578889999988643
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00012 Score=74.63 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=64.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCc---c-cCHHHhc-cccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVG---L-VSFEEAI-STADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~---~-~~l~ell-~~aD~V~l~~Plt~~t~~li~~ 266 (595)
++|+|||.|.||..+|..|...|.+|..|++... .+.....|.. . .+..+.+ +.+|+|++++|.. ++...+..
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l~~ 81 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVIPH 81 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHHHH
Confidence 5799999999999999999988899999998742 1111122321 1 1334444 8899999999954 45555532
Q ss_pred HHHhcCCCceEEEeccCCch
Q 046427 267 EAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~ 286 (595)
.-..++++.+||.+.-|=-
T Consensus 82 -l~~~l~~~~~iv~~~nGi~ 100 (294)
T 3g17_A 82 -LTYLAHEDTLIILAQNGYG 100 (294)
T ss_dssp -HHHHEEEEEEEEECCSSCC
T ss_pred -HHHhhCCCCEEEEeccCcc
Confidence 2334678889999987643
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0017 Score=67.84 Aligned_cols=104 Identities=10% Similarity=0.063 Sum_probs=66.3
Q ss_pred CCEEEEEeCChHHH-HHHHHHhcC-CCEEE-EECCCCc--HHHHHHcCCcc-cCHHHhcc--ccCEEEEeCCCChhcccc
Q 046427 192 GKTLAVMGFGKVGT-EVARRAKGL-GMNVI-AHDPYAQ--ADRARATGVGL-VSFEEAIS--TADFISLHMPLTPATSKM 263 (595)
Q Consensus 192 gktvGIIGlG~IG~-~vA~~l~~~-G~~V~-~~d~~~~--~~~a~~~g~~~-~~l~ell~--~aD~V~l~~Plt~~t~~l 263 (595)
-.+|||||+|.||+ .+++.++.. ++++. ++|++.. ...+.+.|+.. .+++++++ +.|+|++|+|... -..+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~-h~~~ 105 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVL-HAEW 105 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGG-HHHH
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHH-HHHH
Confidence 35899999999998 788888866 78876 5788653 23345567754 48999997 5899999999432 2222
Q ss_pred ccHHHHhcCCCce-EEEecc-CCchhcHHHHHHHHhcCC
Q 046427 264 FNDEAFFKMKKGV-RIVNVA-RGGVVDEEALVRALDSGI 300 (595)
Q Consensus 264 i~~~~l~~mk~ga-iliN~a-rg~~vd~~aL~~aL~~g~ 300 (595)
+ . ..++.|. +++.-- --.+-+.++|.++.++..
T Consensus 106 ~-~---~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g 140 (350)
T 3rc1_A 106 I-D---RALRAGKHVLAEKPLTTDRPQAERLFAVARERG 140 (350)
T ss_dssp H-H---HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTT
T ss_pred H-H---HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 2 1 2233443 443321 223345566777665543
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0015 Score=66.99 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=65.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHH--HHHHc--C------Ccc--cCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQAD--RARAT--G------VGL--VSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~--~a~~~--g------~~~--~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+|||.|.+|..+|..+...|+ +|..||.+.... .+.+. . ... .+ .+.+++||+|+++++...
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~ 79 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ 79 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence 479999999999999999998888 999999875311 11211 1 111 13 367899999999996322
Q ss_pred h-----------cccccc--HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 259 A-----------TSKMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 259 ~-----------t~~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
. +..++. .+.+....|++++++++-+.=+....+.+.....++.|
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG 137 (304)
T 2v6b_A 80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIG 137 (304)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEE
T ss_pred CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEe
Confidence 1 111111 12233346888998875443333444444444444433
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0021 Score=66.44 Aligned_cols=102 Identities=18% Similarity=0.302 Sum_probs=63.9
Q ss_pred CEEEEEeCChHHHHHHHHHh-c-CCCEEE-EECCCCcH--HHHHHcCCc--ccCHHHhcc--ccCEEEEeCCCChhcccc
Q 046427 193 KTLAVMGFGKVGTEVARRAK-G-LGMNVI-AHDPYAQA--DRARATGVG--LVSFEEAIS--TADFISLHMPLTPATSKM 263 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~-~-~G~~V~-~~d~~~~~--~~a~~~g~~--~~~l~ell~--~aD~V~l~~Plt~~t~~l 263 (595)
.+|||||+|.||+..++.++ . -+++++ ++|++... ..+.+.|+. +.+++++++ ++|+|++|+|... ...+
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~-h~~~ 87 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPF-HPEM 87 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGG-HHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHh-HHHH
Confidence 47999999999999999987 5 478855 57987632 234455762 348999997 6999999999432 2211
Q ss_pred ccHHHHhcCCCce-EEEec-cCCchhcHHHHHHHHhcC
Q 046427 264 FNDEAFFKMKKGV-RIVNV-ARGGVVDEEALVRALDSG 299 (595)
Q Consensus 264 i~~~~l~~mk~ga-iliN~-arg~~vd~~aL~~aL~~g 299 (595)
....++.|. +++.- .-...-+.++|.++.++.
T Consensus 88 ----~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~ 121 (346)
T 3cea_A 88 ----TIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSH 121 (346)
T ss_dssp ----HHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTC
T ss_pred ----HHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhC
Confidence 223345564 34431 111222344566666554
|
| >1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00094 Score=55.44 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=47.5
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEc--CCCC-cHHHHHHHhcCC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV--DEEP-SREVLKKIGETP 585 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~--d~~~-~~e~l~~L~~~~ 585 (595)
..|.+..+|+||+++.|+++|+++|+||.+++..+.. +...+.+.+ ++.. -++++++|+++.
T Consensus 6 ~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 6 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567788999999999999999999999999998765 456666555 4322 347777777654
|
| >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.007 Score=61.93 Aligned_cols=127 Identities=14% Similarity=0.098 Sum_probs=86.9
Q ss_pred HhCCceEEeC-CCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC---ChHHHHHHHHH
Q 046427 136 TEHGCLVVNA-PTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF---GKVGTEVARRA 211 (595)
Q Consensus 136 ~~~gI~V~n~-p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl---G~IG~~vA~~l 211 (595)
.-.+|+|.|. -|....++ .+++=++.+.++ .| .+.|.+|++||= |++..+++..+
T Consensus 113 ~~~~vPVINaG~g~~~HPt--Q~LaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~~rva~Sl~~~~ 171 (299)
T 1pg5_A 113 EISDIPVINAGDGKHEHPT--QAVIDIYTINKH------------------FN-TIDGLVFALLGDLKYARTVNSLLRIL 171 (299)
T ss_dssp HHCSSCEEEEEETTTBCHH--HHHHHHHHHHHH------------------HS-CSTTCEEEEEECCSSCHHHHHHHHHG
T ss_pred HhCCCCEEeCCCCCCcCcH--HHHHHHHHHHHH------------------hC-CcCCcEEEEECCCCCCchHHHHHHHH
Confidence 4457899998 55444433 223333333331 12 478999999998 59999999999
Q ss_pred hcC-CCEEEEECCCC---cHHHHHHcCCcc---cCHHHhccccCEEEEeCCCChhc-----------cccccHHHHhcCC
Q 046427 212 KGL-GMNVIAHDPYA---QADRARATGVGL---VSFEEAISTADFISLHMPLTPAT-----------SKMFNDEAFFKMK 273 (595)
Q Consensus 212 ~~~-G~~V~~~d~~~---~~~~a~~~g~~~---~~l~ell~~aD~V~l~~Plt~~t-----------~~li~~~~l~~mk 273 (595)
..+ |++|....|.. +.....+.|... .++++++++||+|..-.=-.+.. ...++.+.++.+|
T Consensus 172 ~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~ 251 (299)
T 1pg5_A 172 TRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMK 251 (299)
T ss_dssp GGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSC
T ss_pred HhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccccccCHHHHHHhhcCcccCHHHHHhcC
Confidence 999 99999998743 222234556542 47999999999998865432110 2456788888888
Q ss_pred CceEEEeccC
Q 046427 274 KGVRIVNVAR 283 (595)
Q Consensus 274 ~gailiN~ar 283 (595)
++++|.-|.-
T Consensus 252 ~~ai~mH~lP 261 (299)
T 1pg5_A 252 KDSIILHPLP 261 (299)
T ss_dssp TTCEEECCSC
T ss_pred CCCEEECCCC
Confidence 8888888863
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.003 Score=64.20 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=60.5
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHHcCCcccCHHHh--ccccCEEEEeCCCC--hhcc-
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARATGVGLVSFEEA--ISTADFISLHMPLT--PATS- 261 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~g~~~~~l~el--l~~aD~V~l~~Plt--~~t~- 261 (595)
.++.||++.|+|.|.+|++++..|...|. +|.+++|...........+...+++++ + ++|+|+.++|.- +...
T Consensus 118 ~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~l-~~DivInaTp~Gm~~~~~~ 196 (282)
T 3fbt_A 118 VEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSNL-KGDVIINCTPKGMYPKEGE 196 (282)
T ss_dssp CCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTTC-CCSEEEECSSTTSTTSTTC
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHhc-cCCEEEECCccCccCCCcc
Confidence 45889999999999999999999999998 999999875332222222222233332 4 899999999862 2111
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
-.+..+. ++++.+++|+.-
T Consensus 197 ~pi~~~~---l~~~~~v~DlvY 215 (282)
T 3fbt_A 197 SPVDKEV---VAKFSSAVDLIY 215 (282)
T ss_dssp CSSCHHH---HTTCSEEEESCC
T ss_pred CCCCHHH---cCCCCEEEEEee
Confidence 1233333 356666666653
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0012 Score=67.27 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=53.0
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHH--HHHHc-----CCc--c---cCHHHhccccCEEEEeCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQAD--RARAT-----GVG--L---VSFEEAISTADFISLHMP 255 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~-----g~~--~---~~l~ell~~aD~V~l~~P 255 (595)
.+.||++.|+|.|.+|++++..|...|. +|.+++++.... .+.+. ++. . .++++.++++|+|+.++|
T Consensus 124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp 203 (283)
T 3jyo_A 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_dssp TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence 5789999999999999999999999998 799999875321 12221 111 1 267788899999999999
Q ss_pred C
Q 046427 256 L 256 (595)
Q Consensus 256 l 256 (595)
.
T Consensus 204 ~ 204 (283)
T 3jyo_A 204 M 204 (283)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0021 Score=66.36 Aligned_cols=103 Identities=13% Similarity=0.028 Sum_probs=63.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEE-EECCCCc--HHHHHHcCCc--ccCHHHhcc--ccCEEEEeCCCChhccccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVI-AHDPYAQ--ADRARATGVG--LVSFEEAIS--TADFISLHMPLTPATSKMF 264 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~--~~~a~~~g~~--~~~l~ell~--~aD~V~l~~Plt~~t~~li 264 (595)
.++||||+|.||+..++.++.. ++++. ++|++.. ...+.+.|+. +.++++++. +.|+|++|+|... ...++
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~-h~~~~ 84 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQD-HYKVA 84 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGG-HHHHH
T ss_pred eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHH-HHHHH
Confidence 4799999999999999988754 56766 5788763 2344556764 458999998 7999999999432 22222
Q ss_pred cHHHHhcCCCce-EEEec-cCCchhcHHHHHHHHhcCC
Q 046427 265 NDEAFFKMKKGV-RIVNV-ARGGVVDEEALVRALDSGI 300 (595)
Q Consensus 265 ~~~~l~~mk~ga-iliN~-arg~~vd~~aL~~aL~~g~ 300 (595)
...++.|. +++.- ---.+-+.++|.++.++..
T Consensus 85 ----~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~ 118 (329)
T 3evn_A 85 ----KAALLAGKHVLVEKPFTLTYDQANELFALAESCN 118 (329)
T ss_dssp ----HHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTT
T ss_pred ----HHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcC
Confidence 22244443 33321 1223334556666665543
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0027 Score=65.93 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=60.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH-HH-HH-------HcC----Ccc-cCHHHhccccCEEEEeC--C
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA-DR-AR-------ATG----VGL-VSFEEAISTADFISLHM--P 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~-a~-------~~g----~~~-~~l~ell~~aD~V~l~~--P 255 (595)
++|+|||.|.+|..+|..+...|+ +|..||.+... +. .. ..+ +.. .++++.+++||+|++++ |
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~p 89 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLT 89 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCCC
Confidence 589999999999999999998787 89999987632 11 01 011 112 47888899999999999 6
Q ss_pred CChhc------ccc-cc------H---HHHhcCCCceEEEecc
Q 046427 256 LTPAT------SKM-FN------D---EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 256 lt~~t------~~l-i~------~---~~l~~mk~gailiN~a 282 (595)
..+.- +.- +. + +.+....|++++++++
T Consensus 90 ~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 90 KVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp SCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 54421 111 00 1 1233345889998875
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0013 Score=67.35 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=61.1
Q ss_pred CEEEEEeCChHHHHHHHHHhc-CCCEEE-EECCCCcHHHHHHcCCcc---cCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKG-LGMNVI-AHDPYAQADRARATGVGL---VSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~-~G~~V~-~~d~~~~~~~a~~~g~~~---~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
.+|||||+|+||+.+++.++. -++++. ++|++... +...|+.+ .++.++ .++|+|++|+|... .. +.
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~--~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~-h~----~~ 81 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAE--VPFELQPFRVVSDIEQL-ESVDVALVCSPSRE-VE----RT 81 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------CCTTSCEESSGGGS-SSCCEEEECSCHHH-HH----HH
T ss_pred CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHH--HHHcCCCcCCHHHHHhC-CCCCEEEECCCchh-hH----HH
Confidence 489999999999999999886 478887 58886532 22256542 244444 68999999999422 22 12
Q ss_pred HHhcCCCceEEEeccC--Cch-hcHHHHHHHHhcCC
Q 046427 268 AFFKMKKGVRIVNVAR--GGV-VDEEALVRALDSGI 300 (595)
Q Consensus 268 ~l~~mk~gailiN~ar--g~~-vd~~aL~~aL~~g~ 300 (595)
....++.|.-+++..- +.. .+.+.|.++.++..
T Consensus 82 ~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g 117 (304)
T 3bio_A 82 ALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG 117 (304)
T ss_dssp HHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence 2234666777776532 222 23456666665543
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0039 Score=65.14 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=50.5
Q ss_pred CCEEEEEeCChHHHHHHHHHh-c-CCCEEE-EECCCCcH--HHHHHcC--Cc-ccCHHHhcc--ccCEEEEeCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAK-G-LGMNVI-AHDPYAQA--DRARATG--VG-LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~-~-~G~~V~-~~d~~~~~--~~a~~~g--~~-~~~l~ell~--~aD~V~l~~Pl 256 (595)
-.+|||||+|.||+..++.+. . -+++++ ++|++... ..+.+.| .. +.+++++++ +.|+|++|+|.
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~ 97 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASN 97 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCc
Confidence 358999999999999999988 5 478877 58987643 3345566 33 458999997 48999999994
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0017 Score=62.85 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=49.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HH-HHHcCCccc-----C---HHHh-ccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DR-ARATGVGLV-----S---FEEA-ISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-a~~~g~~~~-----~---l~el-l~~aD~V~l~~Plt~ 258 (595)
++|.|+|+|.+|+.+|+.|...|.+|+++|++... +. ....++..+ + +.++ +.+||+|++++|...
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 77 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDE 77 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcH
Confidence 36899999999999999999999999999987632 22 233454321 2 4444 778999999998544
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0034 Score=64.80 Aligned_cols=96 Identities=14% Similarity=0.206 Sum_probs=63.4
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCc-HHHHH----H----cCC--ccc---C---HHHhccccCE
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQ-ADRAR----A----TGV--GLV---S---FEEAISTADF 249 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~----~----~g~--~~~---~---l~ell~~aD~ 249 (595)
.++.||++.|+|.|.+|++++..|...|. +|.+++|... .+.+. + .++ ... + +.+.++++|+
T Consensus 150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi 229 (315)
T 3tnl_A 150 HDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI 229 (315)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred CCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence 46889999999999999999999999998 8999998731 22221 1 121 111 2 4566789999
Q ss_pred EEEeCCCC--hhc-cccccHHHHhcCCCceEEEeccCCc
Q 046427 250 ISLHMPLT--PAT-SKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 250 V~l~~Plt--~~t-~~li~~~~l~~mk~gailiN~arg~ 285 (595)
|+.++|.. +.. ...+. ....++++.+++|+.-..
T Consensus 230 IINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P 266 (315)
T 3tnl_A 230 FTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKP 266 (315)
T ss_dssp EEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSS
T ss_pred EEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCC
Confidence 99999953 111 11121 123356777777776443
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.002 Score=68.16 Aligned_cols=122 Identities=20% Similarity=0.171 Sum_probs=90.0
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC-
Q 046427 138 HGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM- 216 (595)
Q Consensus 138 ~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~- 216 (595)
..|.|.|+ --..+|=-+++-+++..| ..|..+...+|.|+|.|..|..+|+.+.++|.
T Consensus 155 ~~ipvf~D---DiqGTa~V~lAall~al~------------------l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~ 213 (398)
T 2a9f_A 155 CHIPVFHD---DQHGTAIVVLAAIFNSLK------------------LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGAT 213 (398)
T ss_dssp CSSCEEEH---HHHHHHHHHHHHHHHHHH------------------TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred CCcceecc---hhhhHHHHHHHHHHHHHH------------------HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCC
Confidence 35889883 223455556666666555 24557888999999999999999999999999
Q ss_pred EEEEECCCC----------c---HHHHHHcCC--cccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 217 NVIAHDPYA----------Q---ADRARATGV--GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 217 ~V~~~d~~~----------~---~~~a~~~g~--~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
+|+.+|++. . ...+..... ...+|.|+++.+|+++=+- +-+++.++.++.|+++++|..+
T Consensus 214 ~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk~Ma~~pIIfal 288 (398)
T 2a9f_A 214 KVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVS-----APGVLKAEWISKMAARPVIFAM 288 (398)
T ss_dssp EEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHHTSCSSCEEEEC
T ss_pred eEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecC-----CCCCCCHHHHHhhCCCCEEEEC
Confidence 999998752 0 011222111 1236999999999987652 3589999999999999999999
Q ss_pred cCCc
Q 046427 282 ARGG 285 (595)
Q Consensus 282 arg~ 285 (595)
|.-.
T Consensus 289 sNPt 292 (398)
T 2a9f_A 289 ANPI 292 (398)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 9754
|
| >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0035 Score=59.88 Aligned_cols=73 Identities=15% Similarity=0.271 Sum_probs=59.2
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC--CCCcHHHHHHHhcCCCcceEEEE
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD--EEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d--~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
.+.|-+.-.|+||++++|+.+|.++|+||..+.++.....+..-+.|.++ +..-+++.++|.++..|..|..+
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl 103 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPI 103 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEEC
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEe
Confidence 47788888999999999999999999999999998777666676655554 44556888888888888777654
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.022 Score=58.49 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=86.1
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCC--hHHHHHHHHHh
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG--KVGTEVARRAK 212 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l~ 212 (595)
|.-.+|+|.|.-+....++ .+++=++.+.++. | .+.|.+|++||=| ++..+++..+.
T Consensus 112 A~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~------------------g-~l~gl~va~vGD~~~rva~Sl~~~~~ 170 (307)
T 2i6u_A 112 ASVATVPVINALSDEFHPC--QVLADLQTIAERK------------------G-ALRGLRLSYFGDGANNMAHSLLLGGV 170 (307)
T ss_dssp HHHCSSCEEESCCSSCCHH--HHHHHHHHHHHHH------------------S-CCTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred HhhCCCCEEcCCCCCcCcc--HHHHHHHHHHHHh------------------C-CcCCeEEEEECCCCcCcHHHHHHHHH
Confidence 3445789999766444433 2333334333311 2 4789999999996 99999999999
Q ss_pred cCCCEEEEECCCC---cHHH---H----HHcCCc---ccCHHHhccccCEEEEeCCC-------Chh-----ccccccHH
Q 046427 213 GLGMNVIAHDPYA---QADR---A----RATGVG---LVSFEEAISTADFISLHMPL-------TPA-----TSKMFNDE 267 (595)
Q Consensus 213 ~~G~~V~~~d~~~---~~~~---a----~~~g~~---~~~l~ell~~aD~V~l~~Pl-------t~~-----t~~li~~~ 267 (595)
.+|++|....|.. +.+. + ++.|.. ..++++++++||+|..-.=. .++ ....++.+
T Consensus 171 ~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~ 250 (307)
T 2i6u_A 171 TAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSR 250 (307)
T ss_dssp HTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHH
T ss_pred HCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecceecCCcccchHHHHHHHhhcCCCHH
Confidence 9999999988753 2211 1 255643 34899999999999983320 011 12456788
Q ss_pred HHhcCCCceEEEecc
Q 046427 268 AFFKMKKGVRIVNVA 282 (595)
Q Consensus 268 ~l~~mk~gailiN~a 282 (595)
.++.+|++++|.-|.
T Consensus 251 ~l~~a~~~ai~mH~l 265 (307)
T 2i6u_A 251 LLALADSDAIVLHCL 265 (307)
T ss_dssp HHHHSCTTCEEEECS
T ss_pred HHhhcCCCcEEECCC
Confidence 888888888888887
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.014 Score=59.64 Aligned_cols=127 Identities=17% Similarity=0.097 Sum_probs=86.6
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-ChHHHHHHHHHhc
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-GKVGTEVARRAKG 213 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~~ 213 (595)
|...+|+|.|.-+....++ .+++=++.+.++. | .+.|.+|++||= +++.++.+..+..
T Consensus 118 a~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~------------------g-~l~gl~ia~vGD~~rva~Sl~~~~~~ 176 (301)
T 2ef0_A 118 ARHAKVPVVNALSDRAHPL--QALADLLTLKEVF------------------G-GLAGLEVAWVGDGNNVLNSLLEVAPL 176 (301)
T ss_dssp HHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH------------------S-CCTTCEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHCCCCEEeCCCCccCch--HHHHHHHHHHHHh------------------C-CcCCcEEEEECCCchhHHHHHHHHHH
Confidence 3345789999765444333 2333333333311 2 478999999998 8999999999999
Q ss_pred CCCEEEEECCCC---cHHHHHHcCCc-ccCHHHhccccCEEEEeCC-C-------Ch--h--ccccccHHHHhcCCCceE
Q 046427 214 LGMNVIAHDPYA---QADRARATGVG-LVSFEEAISTADFISLHMP-L-------TP--A--TSKMFNDEAFFKMKKGVR 277 (595)
Q Consensus 214 ~G~~V~~~d~~~---~~~~a~~~g~~-~~~l~ell~~aD~V~l~~P-l-------t~--~--t~~li~~~~l~~mk~gai 277 (595)
+|++|....|.. +.+......+. ..++++.+++||+|..-.= . .. + ....++.+.++.+|++++
T Consensus 177 ~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai 256 (301)
T 2ef0_A 177 AGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGV 256 (301)
T ss_dssp HTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCE
T ss_pred cCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcE
Confidence 999999988753 22222222354 3489999999999998332 0 00 0 135578888999999999
Q ss_pred EEecc
Q 046427 278 IVNVA 282 (595)
Q Consensus 278 liN~a 282 (595)
|.-|.
T Consensus 257 ~mHpl 261 (301)
T 2ef0_A 257 FLHCL 261 (301)
T ss_dssp EEECS
T ss_pred EECCC
Confidence 99998
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.002 Score=66.40 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=46.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHHHHHcC----Cc-------c-cCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADRARATG----VG-------L-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g----~~-------~-~~l~ell~~aD~V~l~~Plt 257 (595)
++|+|||.|.||.++|..++..|. +|..||.+.........+ .. . .+..+.+++||+|++++|..
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~ 85 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN 85 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence 589999999999999999986554 899999875322111111 11 0 13457799999999998754
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.002 Score=64.41 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=68.9
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEE-EEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNV-IAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V-~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
-+..+|+++|+|.||+.+++. . ++++ .+|+ .... +.|+.. .+++++++++|+|+=|.+ .+ -+.+.
T Consensus 10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k~g----elgv~a~~d~d~lla~pD~VVe~A~-~~----av~e~ 76 (253)
T 1j5p_A 10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RISK----DIPGVVRLDEFQVPSDVSTVVECAS-PE----AVKEY 76 (253)
T ss_dssp -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SSCC----CCSSSEECSSCCCCTTCCEEEECSC-HH----HHHHH
T ss_pred cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-cccc----ccCceeeCCHHHHhhCCCEEEECCC-HH----HHHHH
Confidence 345799999999999999998 4 7775 4567 2211 226653 379999999999988774 22 22233
Q ss_pred HHhcCCCceEEEeccCCchhcH---HHHHHHHhcCC
Q 046427 268 AFFKMKKGVRIVNVARGGVVDE---EALVRALDSGI 300 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~---~aL~~aL~~g~ 300 (595)
....|+.|.-++-++-|.+.|. +.|.++.+.|.
T Consensus 77 ~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg 112 (253)
T 1j5p_A 77 SLQILKNPVNYIIISTSAFADEVFRERFFSELKNSP 112 (253)
T ss_dssp HHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS
T ss_pred HHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC
Confidence 4455899999999999888875 45566655553
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0042 Score=64.24 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=46.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHH--H---HH----c--C--Ccc-cCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADR--A---RA----T--G--VGL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~--a---~~----~--g--~~~-~~l~ell~~aD~V~l~~P 255 (595)
++|+|||.|.+|..+|..+...|+ +|..||.+..... + .+ . . +.. .++ +.+++||+|+++++
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g 81 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAG 81 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 589999999999999999998887 8999998753211 0 00 1 1 122 356 78999999999983
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0011 Score=67.84 Aligned_cols=100 Identities=16% Similarity=0.257 Sum_probs=61.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEE-EECCCCcHH-HHHHcCCc-ccCHHHhcc--ccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVI-AHDPYAQAD-RARATGVG-LVSFEEAIS--TADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~~-~a~~~g~~-~~~l~ell~--~aD~V~l~~Plt~~t~~li~~ 266 (595)
.+|||||+|.||+.+++.++.. +++++ ++|++.... ...+. +. +.+++++++ ++|+|++|+|... ...+
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~-h~~~--- 85 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPAT-HAEI--- 85 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGG-HHHH---
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHH-HHHH---
Confidence 3799999999999999999875 67755 688764221 11111 32 347899986 7999999999432 2212
Q ss_pred HHHhcCCCce-EEEec-cCCchhcHHHHHHHHhc
Q 046427 267 EAFFKMKKGV-RIVNV-ARGGVVDEEALVRALDS 298 (595)
Q Consensus 267 ~~l~~mk~ga-iliN~-arg~~vd~~aL~~aL~~ 298 (595)
....++.|. +++.- .--.+-+.++|.++.++
T Consensus 86 -~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~ 118 (315)
T 3c1a_A 86 -TLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKA 118 (315)
T ss_dssp -HHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHH
Confidence 122355564 45441 12233344566666544
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.002 Score=69.10 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=64.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-----C---HHHh-ccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-----S---FEEA-ISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----~---l~el-l~~aD~V~l~~Plt~~t~ 261 (595)
+.+|.|+|+|++|+.+|+.|+..|.+|++.|.+.. .+.+.+.|+..+ + |.++ +.+||+|++++|....+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~ 83 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL 83 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence 35699999999999999999999999999998863 345566676432 2 4444 788999999999644333
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
. -......+.+...+|--++
T Consensus 84 ~--i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 84 Q--LTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp H--HHHHHHHHCTTCEEEEEES
T ss_pred H--HHHHHHHhCCCCeEEEEEC
Confidence 2 2344555777766665444
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0043 Score=64.34 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=47.3
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHH------H---Hc--C--Ccc-cCHHHhccccCEEEEeCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRA------R---AT--G--VGL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a------~---~~--g--~~~-~~l~ell~~aD~V~l~~P 255 (595)
.++|+|||.|.+|..+|..+...|+ +|..||.+...... . .. . +.. .++ +.+++||+|+++++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg 91 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG 91 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence 3689999999999999999998888 99999987632111 0 00 1 222 356 78999999999994
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0045 Score=64.84 Aligned_cols=102 Identities=19% Similarity=0.305 Sum_probs=62.2
Q ss_pred CEEEEEeCChHHHH-HHHHHhcC-CCEEE-EECCCCcHHHHHHc-CCc-ccCHHHhcc--ccCEEEEeCCCChhcccccc
Q 046427 193 KTLAVMGFGKVGTE-VARRAKGL-GMNVI-AHDPYAQADRARAT-GVG-LVSFEEAIS--TADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 193 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~a~~~-g~~-~~~l~ell~--~aD~V~l~~Plt~~t~~li~ 265 (595)
.+|||||+|.||+. .++.++.. +++|. ++|++..... ... ++. +.+++++++ +.|+|++|+|... -..+
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~-H~~~-- 83 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK-RDLPDVTVIASPEAAVQHPDVDLVVIASPNAT-HAPL-- 83 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-HHCTTSEEESCHHHHHTCTTCSEEEECSCGGG-HHHH--
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH-hhCCCCcEECCHHHHhcCCCCCEEEEeCChHH-HHHH--
Confidence 37999999999997 77777765 78876 5787653222 233 443 348999998 7999999999432 2211
Q ss_pred HHHHhcCCCceEEEecc--CCchhcHHHHHHHHhcCC
Q 046427 266 DEAFFKMKKGVRIVNVA--RGGVVDEEALVRALDSGI 300 (595)
Q Consensus 266 ~~~l~~mk~gailiN~a--rg~~vd~~aL~~aL~~g~ 300 (595)
....++.|.-++.-- --.+-+.++|.++.++..
T Consensus 84 --~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g 118 (364)
T 3e82_A 84 --ARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQ 118 (364)
T ss_dssp --HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTT
T ss_pred --HHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhC
Confidence 122344454443322 123334556666655543
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0021 Score=66.32 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=64.9
Q ss_pred EEEEEeCChHHHHHHHHHhcC-CCEEE-EECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccHHHHh
Q 046427 194 TLAVMGFGKVGTEVARRAKGL-GMNVI-AHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
+|||||+|+||+.+++.+... +++++ ++|++...... .|+.. .++++++.++|+|++|+|..... .....
T Consensus 5 rV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~--~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~~~ 77 (320)
T 1f06_A 5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK--TPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQAP 77 (320)
T ss_dssp EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS--SCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHHH
T ss_pred EEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhc--CCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHHHH
Confidence 799999999999999999866 67755 57876432111 34432 36788888999999999853221 22234
Q ss_pred cCCCceEEEeccCCchh--cH-HHHHHHHhcCC
Q 046427 271 KMKKGVRIVNVARGGVV--DE-EALVRALDSGI 300 (595)
Q Consensus 271 ~mk~gailiN~arg~~v--d~-~aL~~aL~~g~ 300 (595)
.++.|.-++...-..+- +. +.|.++.+++.
T Consensus 78 al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~ 110 (320)
T 1f06_A 78 KFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG 110 (320)
T ss_dssp HHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence 46677766665544332 22 45566555544
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0048 Score=63.68 Aligned_cols=64 Identities=11% Similarity=0.140 Sum_probs=49.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC---CEEE-EECCCCc--HHHHHHcCCc--ccCHHHhcc--ccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG---MNVI-AHDPYAQ--ADRARATGVG--LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G---~~V~-~~d~~~~--~~~a~~~g~~--~~~l~ell~--~aD~V~l~~Pl 256 (595)
.++||||+|.||+..++.++..+ +++. ++|++.. ...+.+.|+. +.+++++++ +.|+|++|+|.
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 76 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQH 76 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCG
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCc
Confidence 37999999999999999998653 5655 4788753 2344566763 458999997 69999999994
|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0033 Score=56.96 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=46.0
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhc
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGE 583 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~ 583 (595)
+.+.+..+|+||+++++.+.|+++||||.+|...+ .++.+.++++.+ -.+.+.+.|.+
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~--~~~~~~~~i~~~--d~~~A~~~L~~ 130 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA--NNNVANVVIRPS--NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEEEEEEEES--CHHHHHHHHHH
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc--cCCcEEEEEEeC--CHHHHHHHHHH
Confidence 34556889999999999999999999999988875 446788888886 33566666665
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0024 Score=66.20 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=49.7
Q ss_pred CEEEEEeCChHHHHHHHHHh-c-CCCEEE-EECCCCcH--HHHHHcC--Cc-ccCHHHhccc--cCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAK-G-LGMNVI-AHDPYAQA--DRARATG--VG-LVSFEEAIST--ADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~-~-~G~~V~-~~d~~~~~--~~a~~~g--~~-~~~l~ell~~--aD~V~l~~Pl 256 (595)
.+|||||+|.||+..++.++ . -++++. ++|++... ..+.+.| .. +.++++++++ .|+|++|+|.
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~ 76 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWG 76 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCc
Confidence 37999999999999999998 5 478876 57887632 3345567 33 3589999986 9999999994
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0043 Score=67.12 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=72.9
Q ss_pred eeeecCCEEEEEeCC----------hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHc-CCccc-CHHHhccccCEEEEeC
Q 046427 187 GVSLVGKTLAVMGFG----------KVGTEVARRAKGLGMNVIAHDPYAQADRARAT-GVGLV-SFEEAISTADFISLHM 254 (595)
Q Consensus 187 g~~l~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~-g~~~~-~l~ell~~aD~V~l~~ 254 (595)
+..+.|++|+|+|+- .-...+++.|...|.+|.+|||....+..... ++.++ ++++.++.||.|++++
T Consensus 317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 396 (446)
T 4a7p_A 317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVT 396 (446)
T ss_dssp TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence 456899999999997 56788999999999999999998743322222 55554 7889999999999999
Q ss_pred CCChhccccccHHHH-hcCCCceEEEeccCCchhcHHHH
Q 046427 255 PLTPATSKMFNDEAF-FKMKKGVRIVNVARGGVVDEEAL 292 (595)
Q Consensus 255 Plt~~t~~li~~~~l-~~mk~gailiN~arg~~vd~~aL 292 (595)
. .++-+. ++-+.+ +.|+ +.+|+|+ |+- .+.+.+
T Consensus 397 ~-~~~f~~-~d~~~~~~~~~-~~~i~D~-r~~-~~~~~~ 430 (446)
T 4a7p_A 397 E-WDAFRA-LDLTRIKNSLK-SPVLVDL-RNI-YPPAEL 430 (446)
T ss_dssp C-CTTTTS-CCHHHHHTTBS-SCBEECS-SCC-SCHHHH
T ss_pred C-CHHhhc-CCHHHHHHhcC-CCEEEEC-CCC-CCHHHH
Confidence 7 344433 344444 4465 4678885 643 465544
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0015 Score=65.06 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=67.8
Q ss_pred HHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-------------------cHH-H
Q 046427 171 ADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-------------------QAD-R 229 (595)
Q Consensus 171 ~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------------~~~-~ 229 (595)
+.++++-.+|.... -..|.+++|.|||+|.+|+.+|+.|...|. ++..+|+.. ... .
T Consensus 12 y~Rq~~l~~~g~~~--q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~ 89 (249)
T 1jw9_B 12 YNRQIILRGFDFDG--QEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVES 89 (249)
T ss_dssp THHHHTSTTTHHHH--HHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHH
T ss_pred hhheecccccCHHH--HHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHH
Confidence 44555545564321 125889999999999999999999999997 899998764 211 1
Q ss_pred H----HHc--CCc--c----c---CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 230 A----RAT--GVG--L----V---SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 230 a----~~~--g~~--~----~---~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
+ .+. ++. . . +++++++++|+|+.+++ +.+++.++++..... +..+|+.
T Consensus 90 ~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~ 152 (249)
T 1jw9_B 90 ARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG 152 (249)
T ss_dssp HHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred HHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence 1 111 121 1 1 24567788898888886 566777776654442 3345554
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0042 Score=60.97 Aligned_cols=91 Identities=20% Similarity=0.197 Sum_probs=62.5
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH---HHHcCCccc--C-HHHhccccCEEEEeCCCChhc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR---ARATGVGLV--S-FEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~---a~~~g~~~~--~-l~ell~~aD~V~l~~Plt~~t 260 (595)
..++.|+++.|||.|.+|...++.|...|.+|+++++....+. +.+.++++. + -++.+..+|+|+.++...+ .
T Consensus 26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~-~ 104 (223)
T 3dfz_A 26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQA-V 104 (223)
T ss_dssp EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTH-H
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHH-H
Confidence 3579999999999999999999999999999999998765332 222234332 1 2456788999988765332 2
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
|.......+ -.++||++.
T Consensus 105 ----N~~I~~~ak-~gi~VNvvD 122 (223)
T 3dfz_A 105 ----NKFVKQHIK-NDQLVNMAS 122 (223)
T ss_dssp ----HHHHHHHSC-TTCEEEC--
T ss_pred ----HHHHHHHHh-CCCEEEEeC
Confidence 333333345 457788743
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0037 Score=67.22 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=49.0
Q ss_pred CEEEEEeCChHHH-HHHHHHhcC-CCEEE-EECCCCcH--HHHHHcCCc------ccCHHHhcc--ccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGT-EVARRAKGL-GMNVI-AHDPYAQA--DRARATGVG------LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~-~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~~------~~~l~ell~--~aD~V~l~~Pl 256 (595)
.+|||||+|.||+ .+++.++.. +++++ ++|++... ..+.+.|+. +.+++++++ +.|+|++|+|.
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~ 160 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN 160 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCc
Confidence 4799999999997 899988865 57764 67887532 234455664 348999997 79999999994
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0073 Score=63.00 Aligned_cols=104 Identities=16% Similarity=0.193 Sum_probs=66.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEE-EECCCCcH--HHHHHcCC----c-ccCHHHhcc--ccCEEEEeCCCChhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVI-AHDPYAQA--DRARATGV----G-LVSFEEAIS--TADFISLHMPLTPATS 261 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g~----~-~~~l~ell~--~aD~V~l~~Plt~~t~ 261 (595)
.+|||||+|.||+.+++.++.. +++++ ++|++... ..+.+.|+ . +.+++++++ ++|+|++|+|... ..
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~-h~ 85 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSL-HV 85 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGG-HH
T ss_pred eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHH-HH
Confidence 3799999999999999988865 67765 57876532 33445563 2 348999996 5999999999432 22
Q ss_pred ccccHHHHhcCCCce-EEEec-cCCchhcHHHHHHHHhcCCe
Q 046427 262 KMFNDEAFFKMKKGV-RIVNV-ARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 262 ~li~~~~l~~mk~ga-iliN~-arg~~vd~~aL~~aL~~g~i 301 (595)
.+ ....++.|. +++.- ---.+-+.++|.++.++..+
T Consensus 86 ~~----~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~ 123 (362)
T 1ydw_A 86 EW----AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV 123 (362)
T ss_dssp HH----HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred HH----HHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCC
Confidence 11 223356665 44432 11223345677777766543
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0026 Score=62.10 Aligned_cols=86 Identities=14% Similarity=0.232 Sum_probs=57.8
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCccc-----C---HHHh-ccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLV-----S---FEEA-ISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-----~---l~el-l~~aD~V~l~~Plt~~t~ 261 (595)
.+++.|+|+|.+|+.+|+.|...|. |+++|++... +.+. .|+..+ + |+++ +.+||.|++++|... .
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~--~ 84 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS--E 84 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH--H
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH--H
Confidence 4579999999999999999999999 9999987643 2233 554321 2 3344 789999999998543 2
Q ss_pred ccccHHHHhcCCCc-eEEEec
Q 046427 262 KMFNDEAFFKMKKG-VRIVNV 281 (595)
Q Consensus 262 ~li~~~~l~~mk~g-ailiN~ 281 (595)
++.-......+.++ .+++.+
T Consensus 85 n~~~~~~a~~~~~~~~iia~~ 105 (234)
T 2aef_A 85 TIHCILGIRKIDESVRIIAEA 105 (234)
T ss_dssp HHHHHHHHHHHCSSSEEEEEC
T ss_pred HHHHHHHHHHHCCCCeEEEEE
Confidence 23333344556666 344443
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0043 Score=65.89 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=62.7
Q ss_pred EEEEEeCChHHHHHHHHHhcCC--------CEEEEECCCCc---H---HHHHHc--------CCc------c-cCHHHhc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLG--------MNVIAHDPYAQ---A---DRARAT--------GVG------L-VSFEEAI 244 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G--------~~V~~~d~~~~---~---~~a~~~--------g~~------~-~~l~ell 244 (595)
+|+|||.|.-|.++|..+..-| .+|..|.+... . +..... |+. . .++++.+
T Consensus 36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al 115 (391)
T 4fgw_A 36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV 115 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence 7999999999999999987533 46888865432 1 111110 121 1 2789999
Q ss_pred cccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCC
Q 046427 245 STADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 245 ~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
++||+|++++| +...+.++. +....++++..+|+++.|
T Consensus 116 ~~ad~ii~avP-s~~~r~~l~-~l~~~~~~~~~iv~~~KG 153 (391)
T 4fgw_A 116 KDVDIIVFNIP-HQFLPRICS-QLKGHVDSHVRAISCLKG 153 (391)
T ss_dssp TTCSEEEECSC-GGGHHHHHH-HHTTTSCTTCEEEECCCS
T ss_pred hcCCEEEEECC-hhhhHHHHH-HhccccCCCceeEEeccc
Confidence 99999999999 444555543 334467899999999987
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.011 Score=60.63 Aligned_cols=92 Identities=24% Similarity=0.274 Sum_probs=67.6
Q ss_pred eecCCEEEEEeCC---hHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChh-----
Q 046427 189 SLVGKTLAVMGFG---KVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPA----- 259 (595)
Q Consensus 189 ~l~gktvGIIGlG---~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~----- 259 (595)
.+.|.+|++||=| ++..+++..+..||++|....|.. ..+ ....| ...++++++++||+|..-.--.+.
T Consensus 144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~-~~~~g-~~~d~~eav~~aDvvyt~~~q~er~~~~~ 221 (304)
T 3r7f_A 144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE-ENTFG-TYVSMDEAVESSDVVMLLRIQNERHQSAV 221 (304)
T ss_dssp CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCT-TCSSC-EECCHHHHHHHCSEEEECCCCTTTCCSSC
T ss_pred CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcc-hhhcC-ccCCHHHHhCCCCEEEeccchhhccccch
Confidence 3789999999975 799999999999999999988743 111 11223 345899999999999884311110
Q ss_pred ------ccccccHHHHhcCCCceEEEecc
Q 046427 260 ------TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 ------t~~li~~~~l~~mk~gailiN~a 282 (595)
....++.+.++.+|++++|.-|.
T Consensus 222 ~~~~~~~~y~v~~~~l~~a~~~ai~mHcl 250 (304)
T 3r7f_A 222 SQEGYLNKYGLTVERAERMKRHAIIMHPA 250 (304)
T ss_dssp CSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred hHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence 12346788888889999988886
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0053 Score=62.81 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=59.5
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcH-H-HHH--HcCC------c--ccCHHHhccccCEEEEeCCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQA-D-RAR--ATGV------G--LVSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~-~-~a~--~~g~------~--~~~l~ell~~aD~V~l~~Plt 257 (595)
-++|+|||.|.||..+|..+...|. +|..+|+.... + .+. ..+. . ..+-.+.+++||+|+++++..
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~~ 86 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR 86 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCCC
Confidence 4689999999999999999998888 99999987522 1 111 2222 1 111235678999999999632
Q ss_pred hhccc------------ccc--HHHHhcCCCceEEEeccCCc
Q 046427 258 PATSK------------MFN--DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 258 ~~t~~------------li~--~~~l~~mk~gailiN~arg~ 285 (595)
. ..+ ++. ...+....+++++++++-|-
T Consensus 87 ~-~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~ 127 (319)
T 1lld_A 87 Q-KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV 127 (319)
T ss_dssp C-CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence 2 211 000 11222236788998886543
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.021 Score=58.99 Aligned_cols=126 Identities=22% Similarity=0.259 Sum_probs=85.2
Q ss_pred HhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCC--hHHHHHHHHHhc
Q 046427 136 TEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG--KVGTEVARRAKG 213 (595)
Q Consensus 136 ~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l~~ 213 (595)
+-.+|+|.|.-+....++ .+++=++.+.++ .| .+.|.+|++||=| ++..+++..+..
T Consensus 132 ~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~rva~Sl~~~~~~ 190 (325)
T 1vlv_A 132 EYSGVPVYNGLTDEFHPT--QALADLMTIEEN------------------FG-RLKGVKVVFMGDTRNNVATSLMIACAK 190 (325)
T ss_dssp HHHCSCEEESCCSSCCHH--HHHHHHHHHHHH------------------HS-CSTTCEEEEESCTTSHHHHHHHHHHHH
T ss_pred HhCCCCEEeCCCCCCCcH--HHHHHHHHHHHH------------------hC-CcCCcEEEEECCCCcCcHHHHHHHHHH
Confidence 344789999765443333 233333333331 12 4789999999996 999999999999
Q ss_pred CCCEEEEECCCC---cHHH-------HHHcCCc---ccCHHHhccccCEEEEeCCC-------Chh-----ccccccHHH
Q 046427 214 LGMNVIAHDPYA---QADR-------ARATGVG---LVSFEEAISTADFISLHMPL-------TPA-----TSKMFNDEA 268 (595)
Q Consensus 214 ~G~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aD~V~l~~Pl-------t~~-----t~~li~~~~ 268 (595)
||++|....|.. +.+. +++.|.. ..++++++++||+|..-.=. .++ ....++.+.
T Consensus 191 ~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~el 270 (325)
T 1vlv_A 191 MGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNERV 270 (325)
T ss_dssp TTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC----------CHHHHGGGCBCHHH
T ss_pred CCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEeccccccccccchHhHHHHHhhcCCCHHH
Confidence 999999988743 2211 1255643 34899999999999883321 011 135568888
Q ss_pred HhcC-CCceEEEecc
Q 046427 269 FFKM-KKGVRIVNVA 282 (595)
Q Consensus 269 l~~m-k~gailiN~a 282 (595)
++.+ |++++|.-|.
T Consensus 271 l~~a~k~dai~mH~L 285 (325)
T 1vlv_A 271 MEMTGKSETIFMHCL 285 (325)
T ss_dssp HHTTCCTTCEEEECS
T ss_pred HHhccCCCeEEECCC
Confidence 8888 8899998887
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.025 Score=58.25 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=85.9
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-ChHHHHHHHHHhc
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-GKVGTEVARRAKG 213 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~~ 213 (595)
|.-.+|+|.|.-+....++ .+++=++.+.++. | .+.|.+|++||= +++..+++..+..
T Consensus 119 A~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~------------------g-~l~gl~va~vGD~~rva~Sl~~~~~~ 177 (315)
T 1pvv_A 119 AKYATVPVINGLSDFSHPC--QALADYMTIWEKK------------------G-TIKGVKVVYVGDGNNVAHSLMIAGTK 177 (315)
T ss_dssp HHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH------------------S-CCTTCEEEEESCCCHHHHHHHHHHHH
T ss_pred HHhCCCCEEcCCCCCCCcH--HHHHHHHHHHHHh------------------C-CcCCcEEEEECCCcchHHHHHHHHHH
Confidence 3445688999655433333 2333333333311 2 478999999997 8999999999999
Q ss_pred CCCEEEEECCCC---cHHH-------HHHcCCc---ccCHHHhccccCEEEEeCCC-------Chh-----ccccccHHH
Q 046427 214 LGMNVIAHDPYA---QADR-------ARATGVG---LVSFEEAISTADFISLHMPL-------TPA-----TSKMFNDEA 268 (595)
Q Consensus 214 ~G~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aD~V~l~~Pl-------t~~-----t~~li~~~~ 268 (595)
+|++|....|.. +.+. +++.|.. ..++++.+++||+|..-.=. .++ ....++.+.
T Consensus 178 ~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~el 257 (315)
T 1pvv_A 178 LGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDL 257 (315)
T ss_dssp TTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHH
T ss_pred CCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcceeccCcccchHHHHHHHHhcCCCHHH
Confidence 999999988743 2211 1255643 34899999999999984321 111 135568888
Q ss_pred HhcCCCceEEEecc
Q 046427 269 FFKMKKGVRIVNVA 282 (595)
Q Consensus 269 l~~mk~gailiN~a 282 (595)
++.+|++++|.-|.
T Consensus 258 l~~a~~~ai~mH~l 271 (315)
T 1pvv_A 258 VKHAKPDYMFMHCL 271 (315)
T ss_dssp HHTSCTTCEEEECS
T ss_pred HhhcCCCcEEECCC
Confidence 88889999998887
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0067 Score=65.65 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=68.7
Q ss_pred eeeecCCEEEEEeCCh----------HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC--Cccc-CHHHhccccCEEEEe
Q 046427 187 GVSLVGKTLAVMGFGK----------VGTEVARRAKGLGMNVIAHDPYAQADRARATG--VGLV-SFEEAISTADFISLH 253 (595)
Q Consensus 187 g~~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g--~~~~-~l~ell~~aD~V~l~ 253 (595)
+..+.|++|+|+|+-- =...+++.|...|.+|.+|||....+.....+ +.++ ++++.++.||.|+++
T Consensus 313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~ 392 (450)
T 3gg2_A 313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHV 392 (450)
T ss_dssp TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence 4468999999999852 46789999999999999999988543222333 4444 688999999999999
Q ss_pred CCCChhccccccHHHH-hcCCCceEEEeccCCc
Q 046427 254 MPLTPATSKMFNDEAF-FKMKKGVRIVNVARGG 285 (595)
Q Consensus 254 ~Plt~~t~~li~~~~l-~~mk~gailiN~arg~ 285 (595)
++ .++-+.+ +-+.+ +.|+ +.+|+|+ |+-
T Consensus 393 t~-~~~f~~~-~~~~~~~~~~-~~~i~D~-r~~ 421 (450)
T 3gg2_A 393 TE-WKEFRMP-DWSALSQAMA-ASLVIDG-RNV 421 (450)
T ss_dssp SC-CGGGSSC-CHHHHHHHSS-SCEEEES-SCC
T ss_pred cC-CHHHhhc-CHHHHHHhcC-CCEEEEC-CCC
Confidence 97 4444443 44444 4465 5688985 543
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=96.48 E-value=0.012 Score=63.20 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=70.3
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE--------ECCCC-cHHH------------------HHHcCCcccC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA--------HDPYA-QADR------------------ARATGVGLVS 239 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~------------------a~~~g~~~~~ 239 (595)
+.++.|||+.|=|+|++|+..|+.|...|.+|++ ||+.- +.+. +.+.|...++
T Consensus 230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~ 309 (450)
T 4fcc_A 230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE 309 (450)
T ss_dssp TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence 3469999999999999999999999999999986 44432 2111 1122333333
Q ss_pred HHHhc-cccCEEEEeCCCChhccccccHHHHhcCCCc--eEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 240 FEEAI-STADFISLHMPLTPATSKMFNDEAFFKMKKG--VRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 240 l~ell-~~aD~V~l~~Plt~~t~~li~~~~l~~mk~g--ailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
-++++ -.||+.+-|. +.+.|+.+....++.+ .++++.+-+.+ ..++ .+.|.+..|
T Consensus 310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~-t~eA-~~iL~~rGI 367 (450)
T 4fcc_A 310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPT-TIEA-TELFQQAGV 367 (450)
T ss_dssp TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTC
T ss_pred CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCC-CHHH-HHHHHHCCC
Confidence 33443 3688887775 4566887777777643 47777777665 3333 344555444
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0026 Score=67.08 Aligned_cols=65 Identities=23% Similarity=0.410 Sum_probs=47.4
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC----CcccC---HHHhccccCEEEE
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG----VGLVS---FEEAISTADFISL 252 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g----~~~~~---l~ell~~aD~V~l 252 (595)
.-+.||||+|+|.|.+|+.+++.++.+|++|+++|++.......-.. ..+.+ +.++++++|+|+.
T Consensus 10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~ 81 (389)
T 3q2o_A 10 IILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTY 81 (389)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeee
Confidence 34789999999999999999999999999999999865211100000 01222 6678888998854
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.01 Score=61.25 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=63.9
Q ss_pred CEEEEEeCChHHH-HHHHHHhcCCCEEE-EECCCCc--HHHHHHc-CCc-ccCHHHhcc--ccCEEEEeCCCChhccccc
Q 046427 193 KTLAVMGFGKVGT-EVARRAKGLGMNVI-AHDPYAQ--ADRARAT-GVG-LVSFEEAIS--TADFISLHMPLTPATSKMF 264 (595)
Q Consensus 193 ktvGIIGlG~IG~-~vA~~l~~~G~~V~-~~d~~~~--~~~a~~~-g~~-~~~l~ell~--~aD~V~l~~Plt~~t~~li 264 (595)
.+|||||+|.+|. .+++.++..++++. ++|++.. ...+.+. ++. +.+++++++ +.|+|++|+|.... .
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~--- 80 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDR-A--- 80 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGH-H---
T ss_pred cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhH-H---
Confidence 4799999999996 67777776788865 6788763 3344555 343 348999997 69999999994321 1
Q ss_pred cHHHHhcCCCce-EEEec-cCCchhcHHHHHHHHhcC
Q 046427 265 NDEAFFKMKKGV-RIVNV-ARGGVVDEEALVRALDSG 299 (595)
Q Consensus 265 ~~~~l~~mk~ga-iliN~-arg~~vd~~aL~~aL~~g 299 (595)
+-....|+.|. +++.- .--.+-+.++|.++.++.
T Consensus 81 -~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~ 116 (336)
T 2p2s_A 81 -ELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAET 116 (336)
T ss_dssp -HHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 11223345554 55542 122333455666665543
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.029 Score=58.16 Aligned_cols=129 Identities=19% Similarity=0.179 Sum_probs=87.0
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCC--hHHHHHHHHHh
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG--KVGTEVARRAK 212 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l~ 212 (595)
|.-.+|+|.|.-+....++ .+++=++.+.++ .|..+.|.+|++||=| ++..+++..+.
T Consensus 118 A~~s~vPVINa~~~~~HPt--Q~LaDl~Ti~e~------------------~g~~l~gl~va~vGD~~~~va~Sl~~~~~ 177 (335)
T 1dxh_A 118 AKFAGVPVFNGLTDEYHPT--QMLADVLTMREH------------------SDKPLHDISYAYLGDARNNMGNSLLLIGA 177 (335)
T ss_dssp HHHSSSCEEEEECSSCCHH--HHHHHHHHHHHT------------------CSSCGGGCEEEEESCCSSHHHHHHHHHHH
T ss_pred HHhCCCCEEcCCCCCCCcH--HHHHHHHHHHHH------------------cCCCcCCeEEEEecCCccchHHHHHHHHH
Confidence 3445789999765433333 233333333331 1224889999999996 99999999999
Q ss_pred cCCCEEEEECCCC---cHHH-------HHHcCCc---ccCHHHhccccCEEEEeCCC--------Chh-----ccccccH
Q 046427 213 GLGMNVIAHDPYA---QADR-------ARATGVG---LVSFEEAISTADFISLHMPL--------TPA-----TSKMFND 266 (595)
Q Consensus 213 ~~G~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aD~V~l~~Pl--------t~~-----t~~li~~ 266 (595)
.+|++|....|.. +.+. +++.|.. ..++++.+++||+|..-.=. ..+ ...-++.
T Consensus 178 ~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~ 257 (335)
T 1dxh_A 178 KLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNM 257 (335)
T ss_dssp HTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCH
T ss_pred HcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHHHHHhhcceeCH
Confidence 9999999988743 2211 1255643 34899999999999883320 010 1245788
Q ss_pred HHHhcC-CCceEEEeccC
Q 046427 267 EAFFKM-KKGVRIVNVAR 283 (595)
Q Consensus 267 ~~l~~m-k~gailiN~ar 283 (595)
+.++.+ ||+++|.-|.-
T Consensus 258 ~ll~~a~~~~ai~mHcLP 275 (335)
T 1dxh_A 258 EIMKATGNPRAKFMHCLP 275 (335)
T ss_dssp HHHHTTCCSSCEEEECSC
T ss_pred HHHHhccCCCeEEECCCC
Confidence 888888 99999998863
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0097 Score=59.12 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=54.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEE-ECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIA-HDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
.+|+|+|+|+||+.+++.+...+.++.+ +|+.... ..|+... ++++++ ++|+|+-+++ ...+.. .+.
T Consensus 4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----~~gv~v~~dl~~l~-~~DVvIDft~-p~a~~~-----~~~ 72 (243)
T 3qy9_A 4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----TTPYQQYQHIADVK-GADVAIDFSN-PNLLFP-----LLD 72 (243)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------CCSCBCSCTTTCT-TCSEEEECSC-HHHHHH-----HHT
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----cCCCceeCCHHHHh-CCCEEEEeCC-hHHHHH-----HHH
Confidence 4799999999999999999866557665 7876542 3566543 788888 9999884442 122222 233
Q ss_pred cCCCceEEEeccCC
Q 046427 271 KMKKGVRIVNVARG 284 (595)
Q Consensus 271 ~mk~gailiN~arg 284 (595)
++.|.-+|....|
T Consensus 73 -l~~g~~vVigTTG 85 (243)
T 3qy9_A 73 -EDFHLPLVVATTG 85 (243)
T ss_dssp -SCCCCCEEECCCS
T ss_pred -HhcCCceEeCCCC
Confidence 6777777765555
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0059 Score=63.92 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=64.7
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHH-HcCCccc----C---HHHhccccCEEEEeCCCChhcc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRAR-ATGVGLV----S---FEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~-~~g~~~~----~---l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.|++|.|+|.|.||...++.++.+|++|++.++... .+.+. ++|...+ + +.++....|+|+-++.....
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~-- 264 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP-- 264 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence 688999999999999999999999999999987653 34444 6776421 2 33444568999888874321
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
-...+..|+++..+++++.
T Consensus 265 ---~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 265 ---LLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp ---SHHHHHHEEEEEEEEECCC
T ss_pred ---HHHHHHHHhcCCEEEEEcc
Confidence 1345667888888888874
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.013 Score=60.07 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=69.0
Q ss_pred eecCCEEEEEeC---ChHHHHHHHHHhcCCCEEEEECCCC---cH---HHHHHcCCcc---cCHHHhccccCEEEEeCCC
Q 046427 189 SLVGKTLAVMGF---GKVGTEVARRAKGLGMNVIAHDPYA---QA---DRARATGVGL---VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 189 ~l~gktvGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~---~~---~~a~~~g~~~---~~l~ell~~aD~V~l~~Pl 256 (595)
.+.|.+|++||= |++..+++..+..+|++|....|.. +. +.+++.|... .++++++++||+|..-.=-
T Consensus 152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q 231 (308)
T 1ml4_A 152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ 231 (308)
T ss_dssp CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence 478999999998 4899999999999999999988743 22 2233446542 4899999999999885421
Q ss_pred C------hhc-----cccccHHHHhcCCCceEEEecc
Q 046427 257 T------PAT-----SKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 257 t------~~t-----~~li~~~~l~~mk~gailiN~a 282 (595)
. ++- ...++.+.++.+|++++|.-|.
T Consensus 232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 268 (308)
T 1ml4_A 232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL 268 (308)
T ss_dssp GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence 1 111 2446777778888888888876
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.006 Score=63.70 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=47.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--------CCEEEE-ECCCCc--HHHHHHcCCc--ccCHHHhcc--ccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--------GMNVIA-HDPYAQ--ADRARATGVG--LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--------G~~V~~-~d~~~~--~~~a~~~g~~--~~~l~ell~--~aD~V~l~~Pl 256 (595)
-+|||||+|.||+.-++.++.. +++|.+ +|++.. ...+++.|+. +.+++++++ +.|+|++|+|.
T Consensus 26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~ 104 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPN 104 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCG
T ss_pred ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCCh
Confidence 3799999999999877766543 567665 687763 3456677874 458999996 47999999994
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0045 Score=64.77 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=46.9
Q ss_pred CEEEEEeCChHHHH-HHHHHhcC-CCEEE-EECCCCcH--HHHHHcC-Cc-ccCHHHhcccc--CEEEEeCC
Q 046427 193 KTLAVMGFGKVGTE-VARRAKGL-GMNVI-AHDPYAQA--DRARATG-VG-LVSFEEAISTA--DFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g-~~-~~~l~ell~~a--D~V~l~~P 255 (595)
.+|||||+|.||+. +++.++.. +.++. ++|++... ..+.+.+ .. +.++++++++. |+|++|+|
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCC
Confidence 48999999999995 88888876 78877 67887532 2223332 33 34899999865 99999998
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0057 Score=63.38 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=48.1
Q ss_pred EEEEEeCChHHHH-HHHHHhcC-CCEEEE-ECCCCc--HHHHHHcCCc--ccCHHHhcc--ccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTE-VARRAKGL-GMNVIA-HDPYAQ--ADRARATGVG--LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~-vA~~l~~~-G~~V~~-~d~~~~--~~~a~~~g~~--~~~l~ell~--~aD~V~l~~Pl 256 (595)
++||||+|.||+. .+..++.. +++|.+ +|++.. .+.+++.|+. +.+++++++ +.|+|++|+|.
T Consensus 25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~ 96 (350)
T 4had_A 25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPT 96 (350)
T ss_dssp EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCG
T ss_pred EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCC
Confidence 7999999999985 56667654 678775 788763 3455677874 458999995 47999999993
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.023 Score=58.97 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=86.9
Q ss_pred HhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCC--hHHHHHHHHHhc
Q 046427 136 TEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG--KVGTEVARRAKG 213 (595)
Q Consensus 136 ~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l~~ 213 (595)
.-.+|+|.|.-+....++ .+++=++.+.+++ .|..+.|.+|++||=| ++..+++..+..
T Consensus 118 ~~~~vPVINa~~~~~HPt--Q~LaDl~Ti~e~~-----------------~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~ 178 (333)
T 1duv_G 118 EYASVPVWNGLTNEFHPT--QLLADLLTMQEHL-----------------PGKAFNEMTLVYAGDARNNMGNSMLEAAAL 178 (333)
T ss_dssp HHHSSCEEESCCSSCCHH--HHHHHHHHHHHHS-----------------TTCCGGGCEEEEESCTTSHHHHHHHHHHHH
T ss_pred HhCCCCeEcCCCCCCCch--HHHHHHHHHHHHh-----------------cCCCCCCcEEEEECCCccchHHHHHHHHHH
Confidence 344799999765444333 2333334333320 1224789999999986 999999999999
Q ss_pred CCCEEEEECCCC---cHHH-------HHHcCCc---ccCHHHhccccCEEEEeCCC--C------hh-----ccccccHH
Q 046427 214 LGMNVIAHDPYA---QADR-------ARATGVG---LVSFEEAISTADFISLHMPL--T------PA-----TSKMFNDE 267 (595)
Q Consensus 214 ~G~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aD~V~l~~Pl--t------~~-----t~~li~~~ 267 (595)
+|++|....|.. +.+. +++.|.. ..++++.+++||+|..-+=. . .+ ....++.+
T Consensus 179 ~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~~ 258 (333)
T 1duv_G 179 TGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSK 258 (333)
T ss_dssp HCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHH
T ss_pred cCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHhhccccCHH
Confidence 999999988743 2211 2255643 34899999999999883320 0 00 12467888
Q ss_pred HHhcC-CCceEEEeccC
Q 046427 268 AFFKM-KKGVRIVNVAR 283 (595)
Q Consensus 268 ~l~~m-k~gailiN~ar 283 (595)
.++.+ |++++|.-|.-
T Consensus 259 ll~~a~~~~ai~mHcLP 275 (333)
T 1duv_G 259 MMQLTGNPEVKFLHCLP 275 (333)
T ss_dssp HHHTTCCTTCEEEECSC
T ss_pred HHHhccCCCcEEECCCC
Confidence 88888 99999998863
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=96.20 E-value=0.026 Score=58.02 Aligned_cols=94 Identities=15% Similarity=0.232 Sum_probs=68.6
Q ss_pred eecCCEEEEEeC---ChHHHHHHHHHhcC-CCEEEEECCCC---cH---HHHHHcCCcc---cCHHHhccccCEEEEeCC
Q 046427 189 SLVGKTLAVMGF---GKVGTEVARRAKGL-GMNVIAHDPYA---QA---DRARATGVGL---VSFEEAISTADFISLHMP 255 (595)
Q Consensus 189 ~l~gktvGIIGl---G~IG~~vA~~l~~~-G~~V~~~d~~~---~~---~~a~~~g~~~---~~l~ell~~aD~V~l~~P 255 (595)
.+.|++|++||= |++..+++..+..+ |++|....|.. +. +.+++.|... .++++++++||+|..-.=
T Consensus 151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~ 230 (310)
T 3csu_A 151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV 230 (310)
T ss_dssp CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence 378999999998 59999999999999 99999988743 22 2233446542 479999999999988543
Q ss_pred CCh----hc------cccccHHHHhcCCCceEEEecc
Q 046427 256 LTP----AT------SKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 256 lt~----~t------~~li~~~~l~~mk~gailiN~a 282 (595)
-.+ +. ...++.+.++.+|++++|.-|.
T Consensus 231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 267 (310)
T 3csu_A 231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 267 (310)
T ss_dssp ----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence 111 00 2456777888888888888886
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0083 Score=61.05 Aligned_cols=104 Identities=19% Similarity=0.266 Sum_probs=66.9
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhcCCCEEE-EECCCCcHHHHHHcCCcc-cCHHHhcc--ccCEEEEeCCCChhccccccH
Q 046427 192 GKTLAVMGF-GKVGTEVARRAKGLGMNVI-AHDPYAQADRARATGVGL-VSFEEAIS--TADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 192 gktvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~g~~~-~~l~ell~--~aD~V~l~~Plt~~t~~li~~ 266 (595)
..+|+|+|+ |++|+.+++.++..|++++ .+||..... ...|+.. .+++++.+ ..|++++++|. +.....+.+
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~--~~~G~~vy~sl~el~~~~~~D~viI~tP~-~~~~~~~~e 83 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT--THLGLPVFNTVREAVAATGATASVIYVPA-PFCKDSILE 83 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCG-GGHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc--eeCCeeccCCHHHHhhcCCCCEEEEecCH-HHHHHHHHH
Confidence 358999999 9999999999998898854 577753211 1346543 47999998 89999999994 434444432
Q ss_pred HHHhcCCCceEEEeccCCc-hhcHHHHHHHHhcCCe
Q 046427 267 EAFFKMKKGVRIVNVARGG-VVDEEALVRALDSGII 301 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~-~vd~~aL~~aL~~g~i 301 (595)
.++ ..... +|..+.|- .-+.+.|.++.++..+
T Consensus 84 -a~~-~Gi~~-iVi~t~G~~~~~~~~l~~~A~~~gv 116 (288)
T 2nu8_A 84 -AID-AGIKL-IITITEGIPTLDMLTVKVKLDEAGV 116 (288)
T ss_dssp -HHH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred -HHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCC
Confidence 222 22222 34444442 2345577777766544
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.013 Score=60.73 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=59.6
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHHH----HHcC-------Ccc-cCHHHhccccCEEEEeCCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADRA----RATG-------VGL-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a----~~~g-------~~~-~~l~ell~~aD~V~l~~Plt 257 (595)
.++|+|||.|.||.++|..+...|+ +|..+|........ .+.+ +.. .+..+.+++||+|+++.+.
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~- 83 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA- 83 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc-
Confidence 5689999999999999999987776 99999986532111 1111 111 1235689999999999863
Q ss_pred hhcccc-----c--cH-------HHHhcCCCceEEEecc
Q 046427 258 PATSKM-----F--ND-------EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~l-----i--~~-------~~l~~mk~gailiN~a 282 (595)
+...++ + |. +.+....|++++++++
T Consensus 84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt 122 (326)
T 3pqe_A 84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122 (326)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 222211 1 11 1234457889999997
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.01 Score=61.17 Aligned_cols=70 Identities=21% Similarity=0.348 Sum_probs=52.0
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCc-HHHH----HH----cCC--c---ccCH---HHhccccCE
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQ-ADRA----RA----TGV--G---LVSF---EEAISTADF 249 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a----~~----~g~--~---~~~l---~ell~~aD~ 249 (595)
.++.||++.|+|.|.+|++++..|...|. +|.+++|... .+.+ .+ .+. . ..++ .+.++++|+
T Consensus 144 ~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~Di 223 (312)
T 3t4e_A 144 FDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADI 223 (312)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred CCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceE
Confidence 45889999999999999999999999998 8999998732 1222 11 122 1 1233 556889999
Q ss_pred EEEeCCCC
Q 046427 250 ISLHMPLT 257 (595)
Q Consensus 250 V~l~~Plt 257 (595)
|+.++|..
T Consensus 224 IINaTp~G 231 (312)
T 3t4e_A 224 LTNGTKVG 231 (312)
T ss_dssp EEECSSTT
T ss_pred EEECCcCC
Confidence 99999863
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.033 Score=58.39 Aligned_cols=93 Identities=19% Similarity=0.163 Sum_probs=69.1
Q ss_pred ecCCEEEEEeCC--hHHHHHHHHHhcCCCEEEEECCCC--c---HHH-------HHHcCCc--c-cCHHHhccccCEEEE
Q 046427 190 LVGKTLAVMGFG--KVGTEVARRAKGLGMNVIAHDPYA--Q---ADR-------ARATGVG--L-VSFEEAISTADFISL 252 (595)
Q Consensus 190 l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~---~~~-------a~~~g~~--~-~~l~ell~~aD~V~l 252 (595)
+.|++|++||=| ++..+++..+..+|++|....|.. . .+. +.+.|.. . .++++++++||+|..
T Consensus 178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVyt 257 (365)
T 4amu_A 178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYT 257 (365)
T ss_dssp CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEE
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEe
Confidence 889999999988 789999999999999999988743 2 111 2344542 2 489999999999987
Q ss_pred eC--CCCh--h---------ccccccHHHHhcCCCceEEEecc
Q 046427 253 HM--PLTP--A---------TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 253 ~~--Plt~--~---------t~~li~~~~l~~mk~gailiN~a 282 (595)
-+ ...+ + ...-++.+.++.+|++++|.-|.
T Consensus 258 d~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL 300 (365)
T 4amu_A 258 DVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL 300 (365)
T ss_dssp CCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred cccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence 32 1111 1 12447888888889999999887
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.015 Score=63.05 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=68.2
Q ss_pred eecCCEEEEEeCCh----------HHHHHHHHHhcCCCEEEEECCCCcHHHHHH-c-------------CCccc-CHHHh
Q 046427 189 SLVGKTLAVMGFGK----------VGTEVARRAKGLGMNVIAHDPYAQADRARA-T-------------GVGLV-SFEEA 243 (595)
Q Consensus 189 ~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~-~-------------g~~~~-~l~el 243 (595)
.+.|++|+|+|+-- -...+++.|...|.+|.+|||....+.... . ++.+. +..+.
T Consensus 326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (467)
T 2q3e_A 326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA 405 (467)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence 48999999999974 678899999999999999999875432211 1 23333 67889
Q ss_pred ccccCEEEEeCCCChhccccccHHHH-hcCCCceEEEeccCCc
Q 046427 244 ISTADFISLHMPLTPATSKMFNDEAF-FKMKKGVRIVNVARGG 285 (595)
Q Consensus 244 l~~aD~V~l~~Plt~~t~~li~~~~l-~~mk~gailiN~arg~ 285 (595)
++.||.|++++. .++-+.+ +-+.+ ..|+...+|+|+ |+-
T Consensus 406 ~~~ad~~vi~t~-~~~f~~~-~~~~~~~~~~~~~~i~D~-r~~ 445 (467)
T 2q3e_A 406 CDGAHAVVICTE-WDMFKEL-DYERIHKKMLKPAFIFDG-RRV 445 (467)
T ss_dssp HTTCSEEEECSC-CGGGGGS-CHHHHHHHSCSSCEEEES-SCT
T ss_pred HhCCcEEEEecC-ChhhhcC-CHHHHHHhcCCCCEEEeC-CCc
Confidence 999999999998 4444443 44443 467776668886 543
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0084 Score=64.56 Aligned_cols=94 Identities=22% Similarity=0.213 Sum_probs=70.8
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCC---EEEEEC----CC----CcHH---H-------HHHcCC--cccCHHHh
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGM---NVIAHD----PY----AQAD---R-------ARATGV--GLVSFEEA 243 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~---~V~~~d----~~----~~~~---~-------a~~~g~--~~~~l~el 243 (595)
|..+.++++.|+|.|..|+++++.|...|. +|+.+| +. .... . +...+. ...++.+.
T Consensus 181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~ 260 (439)
T 2dvm_A 181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA 260 (439)
T ss_dssp TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence 346788999999999999999999999998 799999 65 2111 1 111111 13468899
Q ss_pred ccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccC
Q 046427 244 ISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 244 l~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
++++|+|+-++|..+ +++..+.++.|+++.++.+++.
T Consensus 261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLyn 297 (439)
T 2dvm_A 261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLAN 297 (439)
T ss_dssp HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCS
T ss_pred hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCC
Confidence 999999999998532 4555667788999999999954
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.033 Score=57.13 Aligned_cols=127 Identities=16% Similarity=0.142 Sum_probs=82.5
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-ChHHHHHHHHHhc
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-GKVGTEVARRAKG 213 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~~ 213 (595)
|...+|+|.|.-+....++ .+++=++.+.++ .| .+.|++|++||= +++..+.+..+..
T Consensus 118 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~------------------~g-~l~glkva~vGD~~~va~Sl~~~~~~ 176 (309)
T 4f2g_A 118 AENSRVPVINGLTNEYHPC--QVLADIFTYYEH------------------RG-PIRGKTVAWVGDANNMLYTWIQAARI 176 (309)
T ss_dssp HHTCSSCEEEEECSSCCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHHH
T ss_pred HHhCCCCEEECCCCccCcH--HHHHHHHHHHHH------------------hC-CCCCCEEEEECCCcchHHHHHHHHHH
Confidence 3446789999865443332 222223333221 12 378999999996 6788999999999
Q ss_pred CCCEEEEECCCC---cHHH-HHHcCC--c-ccCHHHhccccCEEEEeC----CC---Ch-----hccccccHHHHhcCCC
Q 046427 214 LGMNVIAHDPYA---QADR-ARATGV--G-LVSFEEAISTADFISLHM----PL---TP-----ATSKMFNDEAFFKMKK 274 (595)
Q Consensus 214 ~G~~V~~~d~~~---~~~~-a~~~g~--~-~~~l~ell~~aD~V~l~~----Pl---t~-----~t~~li~~~~l~~mk~ 274 (595)
||++|....|.. +.+. +++.|. . ..++++.+++||+|..-+ .. .+ -....++.+.++.+|+
T Consensus 177 ~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~ 256 (309)
T 4f2g_A 177 LDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANS 256 (309)
T ss_dssp HTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC------------CCSGGGGCBCHHHHTTSCT
T ss_pred cCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHhcCceeCHHHHHhcCC
Confidence 999999987742 2211 122333 2 248999999999998743 10 00 0124578888888899
Q ss_pred ceEEEecc
Q 046427 275 GVRIVNVA 282 (595)
Q Consensus 275 gailiN~a 282 (595)
+++|.-|.
T Consensus 257 ~ai~mH~l 264 (309)
T 4f2g_A 257 DALFMHCL 264 (309)
T ss_dssp TCEEEECS
T ss_pred CeEEECCC
Confidence 99998886
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.011 Score=60.84 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=67.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcH--HHHHHc--CC------cc-cCHHHhccccCEEEEeCCCChh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQA--DRARAT--GV------GL-VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~--~~a~~~--g~------~~-~~l~ell~~aD~V~l~~Plt~~ 259 (595)
.+|+|||.|.+|.++|..+...|. +|..||..... ..+.++ +. .. .+-.+.+++||+|+++.+. +.
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~-p~ 86 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGA-NR 86 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCC-CC
Confidence 589999999999999999987777 99999986521 112221 11 11 1235679999999999984 32
Q ss_pred cccc-------cc-------HHHHhcCCCceEEEeccCCchhc--HHHHHHH--HhcCCeeEEE--Ee
Q 046427 260 TSKM-------FN-------DEAFFKMKKGVRIVNVARGGVVD--EEALVRA--LDSGIISQAA--LD 307 (595)
Q Consensus 260 t~~l-------i~-------~~~l~~mk~gailiN~arg~~vd--~~aL~~a--L~~g~i~ga~--lD 307 (595)
..++ .| .+.+....|++++++++ ..+| ...+.+. +...++.|.| ||
T Consensus 87 k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~~~~~~k~s~~p~~rviG~gt~Ld 152 (318)
T 1y6j_A 87 KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS--NPVDIITYMIQKWSGLPVGKVIGSGTVLD 152 (318)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS--SSHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence 2221 01 11233346899999973 3344 3344444 4555777762 56
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.021 Score=59.06 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=68.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHH--HH--Hc-------CCcc--cCHHHhccccCEEEEeCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADR--AR--AT-------GVGL--VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~--a~--~~-------g~~~--~~l~ell~~aD~V~l~~Pl 256 (595)
..++|+|||.|.+|.++|..+...|+ +|..||....... +. +. .... .+-.+.+++||+|+++.+.
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~ 83 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV 83 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence 35789999999999999999987666 9999998764211 11 11 1221 2235789999999999763
Q ss_pred Chhcccc-----c--cH-------HHHhcCCCceEEEeccCCchhc--HHHHHHH--HhcCCeeEEE
Q 046427 257 TPATSKM-----F--ND-------EAFFKMKKGVRIVNVARGGVVD--EEALVRA--LDSGIISQAA 305 (595)
Q Consensus 257 t~~t~~l-----i--~~-------~~l~~mk~gailiN~arg~~vd--~~aL~~a--L~~g~i~ga~ 305 (595)
. ...++ + |. +.+....|++++++++ ..+| ...+.+. +...++.|.+
T Consensus 84 p-~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t~~~~k~sg~p~~rviG~~ 147 (321)
T 3p7m_A 84 P-RKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMVNMLQKFSGVPDNKIVGMA 147 (321)
T ss_dssp C-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred C-CCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHHHHHHHhcCCCHHHEEeec
Confidence 2 21111 1 11 1233345889999984 4444 3333333 3334565654
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.01 Score=64.07 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=72.1
Q ss_pred cCCEEEEEeCChH--HHHHHHHHhc----CCCEEEEECCCCcH-HHHHHc---------CCcc-cCHHHhccccCEEEEe
Q 046427 191 VGKTLAVMGFGKV--GTEVARRAKG----LGMNVIAHDPYAQA-DRARAT---------GVGL-VSFEEAISTADFISLH 253 (595)
Q Consensus 191 ~gktvGIIGlG~I--G~~vA~~l~~----~G~~V~~~d~~~~~-~~a~~~---------g~~~-~~l~ell~~aD~V~l~ 253 (595)
+.++|+|||.|.+ |..++..+.. .| +|..||..... +..... .+.. .++++++++||||+++
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a 82 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS 82 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence 4568999999998 5788877653 46 99999987522 211111 1222 3789999999999999
Q ss_pred CCCC-----------hhccccccH------------------------HHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 254 MPLT-----------PATSKMFND------------------------EAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 254 ~Plt-----------~~t~~li~~------------------------~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
++.- |.-.++... +.+....|+++++|.+---=+-..++.+.+..
T Consensus 83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~~p~ 162 (450)
T 3fef_A 83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPG 162 (450)
T ss_dssp CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHCTT
T ss_pred cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHCCC
Confidence 9642 223333211 23444568999999976443445566555555
Q ss_pred CCeeE
Q 046427 299 GIISQ 303 (595)
Q Consensus 299 g~i~g 303 (595)
.++.|
T Consensus 163 ~rviG 167 (450)
T 3fef_A 163 IKAIG 167 (450)
T ss_dssp CEEEE
T ss_pred CCEEE
Confidence 56655
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0099 Score=61.30 Aligned_cols=89 Identities=21% Similarity=0.240 Sum_probs=58.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHH--HHH-------c--CCcc--cCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADR--ARA-------T--GVGL--VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~-------~--g~~~--~~l~ell~~aD~V~l~~Plt 257 (595)
++|+|||.|.||+++|..+...|+ +|..+|....... +.+ . .... .+..+.+++||+|+++.+..
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 479999999999999999886666 9999998763211 100 1 1222 24678899999999998743
Q ss_pred hhcccc-----c--cH-------HHHhcCCCceEEEecc
Q 046427 258 PATSKM-----F--ND-------EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~l-----i--~~-------~~l~~mk~gailiN~a 282 (595)
...++ + |. +.+....|++++++++
T Consensus 81 -~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 118 (314)
T 3nep_X 81 -RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA 118 (314)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred -CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 22211 1 11 1344456888999986
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.05 Score=56.13 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=83.0
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCC-hHHHHHHHHHhc
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG-KVGTEVARRAKG 213 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~l~~ 213 (595)
|...+|+|.|.-+....++ .+++=++.+.++. | .+.|.+|++||=| ++..+++..+..
T Consensus 119 A~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~------------------g-~l~gl~va~vGD~~~va~Sl~~~~~~ 177 (321)
T 1oth_A 119 AKEASIPIINGLSDLYHPI--QILADYLTLQEHY------------------S-SLKGLTLSWIGDGNNILHSIMMSAAK 177 (321)
T ss_dssp HHHCSSCEEESCCSSCCHH--HHHHHHHHHHHHH------------------S-CCTTCEEEEESCSSHHHHHHHTTTGG
T ss_pred HHhCCCCEEcCCCCCCCcH--HHHHHHHHHHHHh------------------C-CcCCcEEEEECCchhhHHHHHHHHHH
Confidence 3445799999766444433 2333334443321 2 3889999999985 588888888889
Q ss_pred CCCEEEEECCCC---cHHH-------HHHcCC--c-ccCHHHhccccCEEEEeC----CCChh--------ccccccHHH
Q 046427 214 LGMNVIAHDPYA---QADR-------ARATGV--G-LVSFEEAISTADFISLHM----PLTPA--------TSKMFNDEA 268 (595)
Q Consensus 214 ~G~~V~~~d~~~---~~~~-------a~~~g~--~-~~~l~ell~~aD~V~l~~----Plt~~--------t~~li~~~~ 268 (595)
||++|....|.. +.+. +++.|. . ..+++++++++|+|..-+ ....+ ....++.+.
T Consensus 178 ~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~ 257 (321)
T 1oth_A 178 FGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKT 257 (321)
T ss_dssp GTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHH
T ss_pred cCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHHH
Confidence 999999988753 2211 113453 3 348999999999999843 11111 114467778
Q ss_pred HhcCCCceEEEecc
Q 046427 269 FFKMKKGVRIVNVA 282 (595)
Q Consensus 269 l~~mk~gailiN~a 282 (595)
++.+|++++|.-|.
T Consensus 258 l~~a~~dai~mH~l 271 (321)
T 1oth_A 258 AKVAASDWTFLHCL 271 (321)
T ss_dssp HHTSCTTCEEEECS
T ss_pred HhhcCCCCEEECCC
Confidence 88888888888876
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.009 Score=63.05 Aligned_cols=64 Identities=16% Similarity=0.302 Sum_probs=49.9
Q ss_pred CEEEEEeCC-hHHHHHHHHHhcC-CCEEE-EECCCCc--HHHHHHcCCcc-cCHHHhccc--cCEEEEeCCC
Q 046427 193 KTLAVMGFG-KVGTEVARRAKGL-GMNVI-AHDPYAQ--ADRARATGVGL-VSFEEAIST--ADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG-~IG~~vA~~l~~~-G~~V~-~~d~~~~--~~~a~~~g~~~-~~l~ell~~--aD~V~l~~Pl 256 (595)
.+|||||+| .+|+..+..++.. ++++. ++|++.. ...+.+.|+.. .++++++++ .|+|++++|.
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~ 74 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPH 74 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCG
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCc
Confidence 379999999 9999999998865 67766 4788753 23445667754 489999985 9999999994
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0064 Score=63.25 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=46.9
Q ss_pred CEEEEEeCChHHHH-HHHHHhcC-CCEEE-EECCCCcHHHHHHcCCc-ccCHHHhccc--cCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTE-VARRAKGL-GMNVI-AHDPYAQADRARATGVG-LVSFEEAIST--ADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~a~~~g~~-~~~l~ell~~--aD~V~l~~Plt 257 (595)
.+|||||+|.||+. .++.++.. ++++. ++|++.........++. +.++++++++ .|+|++|+|..
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 78 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPND 78 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChH
Confidence 37999999999997 77877765 78876 57876532221112333 3489999976 99999999943
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0081 Score=65.34 Aligned_cols=93 Identities=15% Similarity=0.217 Sum_probs=58.3
Q ss_pred cceeeecCCEEEEEeCChHHHHHHHHHhcC-CCEEEEECCCCcH-H-HHHHcCCcc--c------CHHHhccccCEEEEe
Q 046427 185 YVGVSLVGKTLAVMGFGKVGTEVARRAKGL-GMNVIAHDPYAQA-D-RARATGVGL--V------SFEEAISTADFISLH 253 (595)
Q Consensus 185 ~~g~~l~gktvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~-~-~a~~~g~~~--~------~l~ell~~aD~V~l~ 253 (595)
..+..+.+++|+|+|.|.+|+.+++.|... |.+|.++|++... + .+...++.. . ++.++++++|+|+.|
T Consensus 16 ~~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~ 95 (467)
T 2axq_A 16 HIEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISL 95 (467)
T ss_dssp -------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEEC
T ss_pred ccccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEEC
Confidence 345678899999999999999999999976 7899999987532 1 122223321 1 356778899999999
Q ss_pred CCCChhccccccHHHHhcCCCceEEEecc
Q 046427 254 MPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 254 ~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+|..-. .. +.. ..++.|..+++++
T Consensus 96 tp~~~~-~~-v~~---a~l~~g~~vvd~~ 119 (467)
T 2axq_A 96 IPYTFH-PN-VVK---SAIRTKTDVVTSS 119 (467)
T ss_dssp SCGGGH-HH-HHH---HHHHHTCEEEECS
T ss_pred Cchhhh-HH-HHH---HHHhcCCEEEEee
Confidence 995421 11 111 1234566666664
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0033 Score=61.39 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=41.4
Q ss_pred CEEEEEeCChHHHHHHHH--HhcCCCEEEE-ECCCCcHHHHHHcCCc---ccCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARR--AKGLGMNVIA-HDPYAQADRARATGVG---LVSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~--l~~~G~~V~~-~d~~~~~~~a~~~g~~---~~~l~ell~~aD~V~l~~Pl 256 (595)
++++|||.|++|+.+|+. ....|+++.+ +|.++......-.|+. ..++++++++.|.+++|+|.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs 155 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA 155 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence 469999999999999994 3456888776 5765532111112322 23688998777999999994
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.013 Score=61.15 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=51.9
Q ss_pred EEEEEeCChHHHHHHHHHhcC-CCEEEE-ECCCCcH--HHHHHcCCccc------------------CHHHhccccCEEE
Q 046427 194 TLAVMGFGKVGTEVARRAKGL-GMNVIA-HDPYAQA--DRARATGVGLV------------------SFEEAISTADFIS 251 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~--~~a~~~g~~~~------------------~l~ell~~aD~V~ 251 (595)
+|||+|+|+||+.+++.+... ++++.+ +|+.... ..+...|+... +++++++++|+|+
T Consensus 3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~ 82 (340)
T 1b7g_O 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (340)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence 799999999999999999865 578765 4554321 22333333211 3446667899999
Q ss_pred EeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 252 LHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 252 l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.|+|... +.... .. .++.|+.+|+.+
T Consensus 83 ~aTp~~~-s~~~a--~~--~~~aG~kvV~~s 108 (340)
T 1b7g_O 83 DTTPNGV-GAQYK--PI--YLQLQRNAIFQG 108 (340)
T ss_dssp ECCSTTH-HHHHH--HH--HHHTTCEEEECT
T ss_pred ECCCCch-hHHHH--HH--HHHcCCeEEEeC
Confidence 9998432 22221 11 234566666654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.012 Score=60.42 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=46.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHH--HH--c-------CC--cc-cCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRA--RA--T-------GV--GL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a--~~--~-------g~--~~-~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|||.|.+|..+|..+...|. +|..+|........ .+ . .. .. .+. +.+++||+|+++++.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~ 80 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA 80 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC
Confidence 589999999999999999988886 89999986532111 11 1 11 12 356 779999999999863
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0092 Score=62.04 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=47.1
Q ss_pred EEEEEeCChHHH-HHHHHHhcC-CCEEE-EECCCCcHHHHHH---cCCc-ccCHHHhccc--cCEEEEeCCC
Q 046427 194 TLAVMGFGKVGT-EVARRAKGL-GMNVI-AHDPYAQADRARA---TGVG-LVSFEEAIST--ADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~-~vA~~l~~~-G~~V~-~~d~~~~~~~a~~---~g~~-~~~l~ell~~--aD~V~l~~Pl 256 (595)
+|||||+|.||+ ..+..++.. +++|. ++|++.....+.+ .++. +.++++++++ .|+|++|+|.
T Consensus 4 rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 75 (349)
T 3i23_A 4 KMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPA 75 (349)
T ss_dssp EEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCG
T ss_pred EEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCc
Confidence 799999999999 567767665 78876 5787743344444 3554 3489999986 8999999994
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.015 Score=58.64 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=49.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcCCccc-CHHHhccccCEEEEeCCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATGVGLV-SFEEAISTADFISLHMPLT 257 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt 257 (595)
.++++.|+|.|.+|++++..|...|. +|.+++|.... ..+.+.+.... ++. +.++|+|+.++|..
T Consensus 118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~g 186 (271)
T 1npy_A 118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG 186 (271)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCC
Confidence 46899999999999999999999997 79999997532 23334444332 222 46899999999964
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.11 Score=53.64 Aligned_cols=134 Identities=15% Similarity=0.138 Sum_probs=85.0
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCC--hHHHHHHHHHh
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG--KVGTEVARRAK 212 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l~ 212 (595)
|...+|+|.|.-.....++ .+++=++.+.++... ... ....+.|.+|++||=| ++..+++..+.
T Consensus 118 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~g~----------~~~--~~~~l~gl~va~vGD~~~~va~Sl~~~~~ 183 (328)
T 3grf_A 118 AQHASVPCINALDDFGHPL--QMVCDFMTIKEKFTA----------AGE--FSNGFKGIKFAYCGDSMNNVTYDLMRGCA 183 (328)
T ss_dssp HHHCSSCEEESSCSSCCHH--HHHHHHHHHHHHHHH----------TTC--CTTTGGGCCEEEESCCSSHHHHHHHHHHH
T ss_pred HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhCC----------ccc--cccccCCcEEEEeCCCCcchHHHHHHHHH
Confidence 4456789999866543333 233333444443211 000 1124889999999986 89999999999
Q ss_pred cCCCEEEEECCCC-c----HH---HH----HH--cCCc---ccCHHHhccccCEEEEe----CCCChh---------ccc
Q 046427 213 GLGMNVIAHDPYA-Q----AD---RA----RA--TGVG---LVSFEEAISTADFISLH----MPLTPA---------TSK 262 (595)
Q Consensus 213 ~~G~~V~~~d~~~-~----~~---~a----~~--~g~~---~~~l~ell~~aD~V~l~----~Plt~~---------t~~ 262 (595)
.||++|....|.. . .+ .+ .+ .|.. ..++++.+++||+|..- +-..++ ...
T Consensus 184 ~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~~~~~~~y 263 (328)
T 3grf_A 184 LLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPF 263 (328)
T ss_dssp HHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSEEEECCCC--------CCTHHHHHGGG
T ss_pred HcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHHHHHhcCC
Confidence 9999999987743 1 11 11 22 4532 24899999999999863 121110 124
Q ss_pred cccHHHHhcCCCceEEEecc
Q 046427 263 MFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~a 282 (595)
.++.+.++.+|++++|.-|.
T Consensus 264 ~vt~~~l~~a~~~ai~mH~l 283 (328)
T 3grf_A 264 QVDDAVMAVTSKRSIFMNCL 283 (328)
T ss_dssp CBCHHHHTTSCTTCEEEECS
T ss_pred CCCHHHHHhcCCCCEEECCC
Confidence 47888888899999999887
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.12 Score=53.73 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=81.7
Q ss_pred hHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-ChHHHHHHHHHh
Q 046427 134 AATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-GKVGTEVARRAK 212 (595)
Q Consensus 134 aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~ 212 (595)
.|...+|+|.|.-+....++ .+++=++.+.++.+ .|..+.|++|++||= +++..+++..+.
T Consensus 135 lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~~----------------~G~~l~glkva~vGD~~rva~Sl~~~~~ 196 (339)
T 4a8t_A 135 LANCATIPVINGMSDYNHPT--QELGDLCTMVEHLP----------------EGKKLEDCKVVFVGDATQVCFSLGLITT 196 (339)
T ss_dssp HHHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC----------------TTCCGGGCEEEEESSCCHHHHHHHHHHH
T ss_pred HHHhCCCCEEECCCCCcCcH--HHHHHHHHHHHHhh----------------cCCCCCCCEEEEECCCchhHHHHHHHHH
Confidence 34556899999865433332 22232333333110 022488999999986 688999999999
Q ss_pred cCCCEEEEECCCC---cHHH-------HHHcCCc---ccCHHHhccccCEEEEeC--CCC--h----h----c--ccccc
Q 046427 213 GLGMNVIAHDPYA---QADR-------ARATGVG---LVSFEEAISTADFISLHM--PLT--P----A----T--SKMFN 265 (595)
Q Consensus 213 ~~G~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aD~V~l~~--Plt--~----~----t--~~li~ 265 (595)
.||++|....|.. +... +.+.|.. ..+++ .+++||+|..-+ ... . + . ...++
T Consensus 197 ~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~vt 275 (339)
T 4a8t_A 197 KMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVN 275 (339)
T ss_dssp HTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCBC
T ss_pred HcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHHHHhccccccC
Confidence 9999999988743 2211 2344542 24788 999999999732 111 1 1 0 14466
Q ss_pred HHHHhcCCCceEEEecc
Q 046427 266 DEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 266 ~~~l~~mk~gailiN~a 282 (595)
.+.++.+|++++|.-|.
T Consensus 276 ~ell~~ak~dai~mHcL 292 (339)
T 4a8t_A 276 QEMMDRAGANCKFMHCL 292 (339)
T ss_dssp HHHHHHHCTTCEEEECS
T ss_pred HHHHHhcCCCcEEECCC
Confidence 77777777777777776
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0076 Score=62.91 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=47.6
Q ss_pred CEEEEEeCChHHHH-HHHHHhcC-CCEEE-EECCCCcHHHHHHc-CCc-ccCHHHhcc--ccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTE-VARRAKGL-GMNVI-AHDPYAQADRARAT-GVG-LVSFEEAIS--TADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~a~~~-g~~-~~~l~ell~--~aD~V~l~~Plt 257 (595)
.+|||||+|.||+. .++.++.. +++|. ++|++... .+... ++. +.+++++++ +.|+|++|+|..
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 76 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE-VKRDFPDAEVVHELEEITNDPAIELVIVTTPSG 76 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH-HHHHCTTSEEESSTHHHHTCTTCCEEEECSCTT
T ss_pred ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHhhCCCCceECCHHHHhcCCCCCEEEEcCCcH
Confidence 37999999999997 67777765 78876 46876532 33344 443 348999998 789999999953
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.016 Score=59.93 Aligned_cols=88 Identities=19% Similarity=0.237 Sum_probs=66.5
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc--CHHHhccccCEEEEeCCCChhccccccHH
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV--SFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
.|.+|.|+|.|.+|...++.++.+|.+|++.++.. ..+.++++|...+ +.+++.+..|+|+-++.... . -..
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~----~-~~~ 250 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHY----D-LKD 250 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCC----C-HHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHH----H-HHH
Confidence 47899999999999999999999999999998766 5567778886432 33444446888888876432 1 244
Q ss_pred HHhcCCCceEEEeccC
Q 046427 268 AFFKMKKGVRIVNVAR 283 (595)
Q Consensus 268 ~l~~mk~gailiN~ar 283 (595)
.+..++++..++.++.
T Consensus 251 ~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 251 YLKLLTYNGDLALVGL 266 (348)
T ss_dssp HHTTEEEEEEEEECCC
T ss_pred HHHHHhcCCEEEEECC
Confidence 5677888888888864
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.01 Score=60.88 Aligned_cols=111 Identities=10% Similarity=0.108 Sum_probs=65.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCc-HHHHH---Hc---CCcc-cCHHHhccccCEEEEeCCCCh----
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQ-ADRAR---AT---GVGL-VSFEEAISTADFISLHMPLTP---- 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~-~~~a~---~~---g~~~-~~l~ell~~aD~V~l~~Plt~---- 258 (595)
++|+|||.|.+|..+|..+...|+ +|..||.... ...+. .. .+.. .++ +.+++||+|+++.....
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~t 93 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQS 93 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----CC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCCC
Confidence 689999999999999999887677 9999998652 11111 11 1222 366 67899999999973211
Q ss_pred ------hcccccc--HHHHhcCCCceEEEeccCCchhcHHHHHHH--HhcCCeeEE
Q 046427 259 ------ATSKMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRA--LDSGIISQA 304 (595)
Q Consensus 259 ------~t~~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~a--L~~g~i~ga 304 (595)
++..++. ...+....|++++++++---=+....+.+. +...++.|.
T Consensus 94 R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~ 149 (303)
T 2i6t_A 94 YLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI 149 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence 1111111 112333358899988765221223333333 334466665
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.012 Score=61.00 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=58.6
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHH--HHH--c------CCcc-cCHHHhccccCEEEEeCCC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADR--ARA--T------GVGL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~--~------g~~~-~~l~ell~~aD~V~l~~Pl 256 (595)
-.+++|+|||.|.||+++|..+...|+ ++..||....... +.+ . ++.. .+..+.+++||+|+++...
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence 356799999999999999999987666 9999998642111 111 1 1111 2346789999999998763
Q ss_pred Ch---hcc-ccc--cH-------HHHhcCCCceEEEecc
Q 046427 257 TP---ATS-KMF--ND-------EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 257 t~---~t~-~li--~~-------~~l~~mk~gailiN~a 282 (595)
.. +++ +++ |. +.+....|++++++++
T Consensus 87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp C----------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 21 112 122 11 2344456788888885
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.017 Score=62.95 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=67.1
Q ss_pred CEEEEEeC----ChHHHHHHHHHhcC--CCEEE-EECCCCcH--HHHHHcCCc----ccCHHHhcc--ccCEEEEeCCCC
Q 046427 193 KTLAVMGF----GKVGTEVARRAKGL--GMNVI-AHDPYAQA--DRARATGVG----LVSFEEAIS--TADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGl----G~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~----~~~l~ell~--~aD~V~l~~Plt 257 (595)
.+|||||+ |.||+..++.++.. ++++. ++|++... ..+.+.|+. +.+++++++ +.|+|++|+|..
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~~ 119 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP 119 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCcH
Confidence 47999999 99999999999876 78865 57887532 334556764 458999996 699999999942
Q ss_pred hhccccccHHHHhcCCCc-------eEEEecc-CCchhcHHHHHHHHhcCC
Q 046427 258 PATSKMFNDEAFFKMKKG-------VRIVNVA-RGGVVDEEALVRALDSGI 300 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~g-------ailiN~a-rg~~vd~~aL~~aL~~g~ 300 (595)
. -..+ ....++.| .+++.-= --.+-+.++|+++.++..
T Consensus 120 ~-H~~~----~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g 165 (479)
T 2nvw_A 120 E-HYEV----VKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA 165 (479)
T ss_dssp H-HHHH----HHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred H-HHHH----HHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcC
Confidence 2 1111 12224444 3666631 123334567777665543
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.091 Score=54.53 Aligned_cols=128 Identities=22% Similarity=0.263 Sum_probs=84.3
Q ss_pred hHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-ChHHHHHHHHHh
Q 046427 134 AATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-GKVGTEVARRAK 212 (595)
Q Consensus 134 aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~ 212 (595)
.|...+|+|.|.-+....++ .+++=++.+.++ .| .+.|++|++||= +++..+++..+.
T Consensus 142 lA~~~~vPVINag~~~~HPt--QaLaDl~TI~E~------------------~G-~l~glkva~vGD~~nva~Sl~~~~~ 200 (340)
T 4ep1_A 142 LAKESSIPVINGLTDDHHPC--QALADLMTIYEE------------------TN-TFKGIKLAYVGDGNNVCHSLLLASA 200 (340)
T ss_dssp HHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHH
T ss_pred HHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHH------------------hC-CCCCCEEEEECCCchhHHHHHHHHH
Confidence 34556899999755433222 222223333331 12 378999999996 678899999999
Q ss_pred cCCCEEEEECCCC---cHHH-------HHHcCCc---ccCHHHhccccCEEEEeCCCCh------h-----ccccccHHH
Q 046427 213 GLGMNVIAHDPYA---QADR-------ARATGVG---LVSFEEAISTADFISLHMPLTP------A-----TSKMFNDEA 268 (595)
Q Consensus 213 ~~G~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aD~V~l~~Plt~------~-----t~~li~~~~ 268 (595)
.||++|....|.. +... +++.|.. ..++++++++||+|..-.=... + ....++.+.
T Consensus 201 ~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~el 280 (340)
T 4ep1_A 201 KVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKEL 280 (340)
T ss_dssp HHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC------CHHHHHHHHGGGCBCHHH
T ss_pred HcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCccCCCCCchHHHHHHhccccCCHHH
Confidence 9999999987743 2211 2245643 2489999999999987442110 0 124578888
Q ss_pred HhcCCCceEEEecc
Q 046427 269 FFKMKKGVRIVNVA 282 (595)
Q Consensus 269 l~~mk~gailiN~a 282 (595)
++.+|++++|.-|.
T Consensus 281 l~~ak~dai~MHcL 294 (340)
T 4ep1_A 281 VKHAKQTYHFLHCL 294 (340)
T ss_dssp HTTSCTTCEEEECS
T ss_pred HHhcCCCcEEECCC
Confidence 88889999999887
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.024 Score=61.75 Aligned_cols=100 Identities=23% Similarity=0.252 Sum_probs=69.5
Q ss_pred eeeecCCEEEEEeCCh----------HHHHHHHHHhcCCCEEEEECCCCcHHHHHHc------------CCccc-CHHHh
Q 046427 187 GVSLVGKTLAVMGFGK----------VGTEVARRAKGLGMNVIAHDPYAQADRARAT------------GVGLV-SFEEA 243 (595)
Q Consensus 187 g~~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~------------g~~~~-~l~el 243 (595)
+..+.|++|+|+|+-- =...+++.|...|.+|.+|||....+..... .+.++ ++.+.
T Consensus 323 ~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (478)
T 2y0c_A 323 GEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQA 402 (478)
T ss_dssp CSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHH
T ss_pred cccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHH
Confidence 4468999999999843 5677999999999999999998743211212 24443 67899
Q ss_pred ccccCEEEEeCCCChhccccccHHHH-hcCCCceEEEeccCCchhcHHH
Q 046427 244 ISTADFISLHMPLTPATSKMFNDEAF-FKMKKGVRIVNVARGGVVDEEA 291 (595)
Q Consensus 244 l~~aD~V~l~~Plt~~t~~li~~~~l-~~mk~gailiN~arg~~vd~~a 291 (595)
+++||+|++++.- ++-+.+ +-+.+ +.|+ ..+|+|+ |+ +.+.+.
T Consensus 403 ~~~ad~~vi~t~~-~~f~~~-~~~~~~~~~~-~~~i~D~-r~-~~~~~~ 446 (478)
T 2y0c_A 403 ARDADALVIVTEW-KIFKSP-DFVALGRLWK-TPVIFDG-RN-LYEPET 446 (478)
T ss_dssp TTTCSEEEECSCC-GGGGSC-CHHHHHTTCS-SCEEEES-SC-CSCHHH
T ss_pred HhCCCEEEEecCC-hHhhcc-CHHHHHhhcC-CCEEEEC-CC-CCCHHH
Confidence 9999999999984 444433 44444 4465 4788987 54 345543
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.012 Score=61.09 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=60.1
Q ss_pred CEEEEEeCChHHHH-HHH-HHh-cCCCEEE-EECCCCcH-HHHHH-cCCc-ccCHHHhccc--cCEEEEeCCCChhcccc
Q 046427 193 KTLAVMGFGKVGTE-VAR-RAK-GLGMNVI-AHDPYAQA-DRARA-TGVG-LVSFEEAIST--ADFISLHMPLTPATSKM 263 (595)
Q Consensus 193 ktvGIIGlG~IG~~-vA~-~l~-~~G~~V~-~~d~~~~~-~~a~~-~g~~-~~~l~ell~~--aD~V~l~~Plt~~t~~l 263 (595)
.+|||||+|.||+. .+. .++ .-++++. ++|++... ..+.+ .++. +.++++++++ .|+|++|+|.... ..+
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~~~ 81 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH-FEY 81 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGH-HHH
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHH-HHH
Confidence 37999999999996 455 334 3478877 68887632 22222 2444 3489999986 9999999994321 111
Q ss_pred ccHHHHhcCCCceEEEecc--CCchhcHHHHHHHHhcC
Q 046427 264 FNDEAFFKMKKGVRIVNVA--RGGVVDEEALVRALDSG 299 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~a--rg~~vd~~aL~~aL~~g 299 (595)
....++.|.-++.-- --.+-+.++|.++.++.
T Consensus 82 ----~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 115 (345)
T 3f4l_A 82 ----AKRALEAGKNVLVEKPFTPTLAQAKELFALAKSK 115 (345)
T ss_dssp ----HHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 223345555444322 12223445566655543
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0079 Score=63.91 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=48.0
Q ss_pred EEEEEeCChHHHHHHHHHhcC---------CCEEEE-ECCCCc--HHHHHHcCCc--ccCHHHhcc--ccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGL---------GMNVIA-HDPYAQ--ADRARATGVG--LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~---------G~~V~~-~d~~~~--~~~a~~~g~~--~~~l~ell~--~aD~V~l~~Pl 256 (595)
+|||||+|.||+..++.++.. +.+|.+ +|++.. ...+++.|+. +.+++++++ +.|+|++|+|.
T Consensus 28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~ 106 (412)
T 4gqa_A 28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN 106 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence 899999999999888877643 457665 688763 3345667774 358999996 58999999994
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.017 Score=59.40 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=67.8
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcH-H-HHHH--c-------CCcc-cCHHHhccccCEEEEeCCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQA-D-RARA--T-------GVGL-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~-~-~a~~--~-------g~~~-~~l~ell~~aD~V~l~~Plt 257 (595)
..+|+|||.|.+|.++|..+...| -+|..||..... + .+.. . .+.. .+..+.+++||+|+++.+..
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~ 85 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAA 85 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCC
Confidence 468999999999999999988666 489999976421 1 1111 1 1111 14567799999999999753
Q ss_pred hhcccc-----c--cH-------HHHhcCCCceEEEeccCCchhc--HHHHHHH--HhcCCeeEE
Q 046427 258 PATSKM-----F--ND-------EAFFKMKKGVRIVNVARGGVVD--EEALVRA--LDSGIISQA 304 (595)
Q Consensus 258 ~~t~~l-----i--~~-------~~l~~mk~gailiN~arg~~vd--~~aL~~a--L~~g~i~ga 304 (595)
. ..+. + |. +.+....|++++++++ ..+| ...+.+. +...++.|.
T Consensus 86 ~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t~~~~k~~~~p~~rviG~ 147 (317)
T 3d0o_A 86 Q-KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDILAYATWKFSGLPKERVIGS 147 (317)
T ss_dssp C-CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred C-CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHhCCCHHHEEec
Confidence 2 2211 0 11 1233447899999975 3344 3344443 444466555
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.02 Score=61.83 Aligned_cols=111 Identities=15% Similarity=0.214 Sum_probs=71.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-----HHHHHHcCCccc---CHHHhccc-cCEEEEeCCCChh
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-----ADRARATGVGLV---SFEEAIST-ADFISLHMPLTPA 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-----~~~a~~~g~~~~---~l~ell~~-aD~V~l~~Plt~~ 259 (595)
++.||+|.|||+|..|.++|+.|+..|++|.++|.... .+..++.|++.. ..++++.+ +|+|++.--..+.
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~ 85 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN 85 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence 46799999999999999999999999999999998541 123455687543 34456676 9999986332221
Q ss_pred cc----------ccccHH-HHhc-CCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 260 TS----------KMFNDE-AFFK-MKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 260 t~----------~li~~~-~l~~-mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
+. .++.+. .+.. ++.-.+-|-=+.|+.-...-+...|+..
T Consensus 86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~ 137 (451)
T 3lk7_A 86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAG 137 (451)
T ss_dssp SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 11 133332 2333 3433344444478876566666666643
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.014 Score=63.61 Aligned_cols=98 Identities=22% Similarity=0.326 Sum_probs=70.4
Q ss_pred eeeecCCEEEEEeCCh----------HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCC
Q 046427 187 GVSLVGKTLAVMGFGK----------VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 187 g~~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~P 255 (595)
+..+.|++|+|+|+-- =...+++.|...|.+|.+|||....- ..+.+ .++++.++.||.|+++++
T Consensus 348 ~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~----~~~~~~~~~~~~~~~ad~vvi~t~ 423 (478)
T 3g79_A 348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNY----PGVEISDNLEEVVRNADAIVVLAG 423 (478)
T ss_dssp TCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCB----TTBCEESCHHHHHTTCSEEEECSC
T ss_pred ccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccc----cCcceecCHHHHHhcCCEEEEecC
Confidence 3468999999999853 35789999999999999999987511 11232 478999999999999997
Q ss_pred CChhccccccHH-HHhcCC-CceEEEeccCCchhcHHHH
Q 046427 256 LTPATSKMFNDE-AFFKMK-KGVRIVNVARGGVVDEEAL 292 (595)
Q Consensus 256 lt~~t~~li~~~-~l~~mk-~gailiN~arg~~vd~~aL 292 (595)
.++-+.+ +-+ ..+.|+ +..+|+|+ |+- .|.+.+
T Consensus 424 -~~~f~~~-d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~ 458 (478)
T 3g79_A 424 -HSAYSSL-KADWAKKVSAKANPVIIDG-RNV-IEPDEF 458 (478)
T ss_dssp -CHHHHSC-CHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred -CHHHHhh-hHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence 4544443 433 344677 47899995 654 465544
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.024 Score=60.91 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=65.5
Q ss_pred eecCCEEEEEeCCh----------HHHHHHHHHhcC-CCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCC
Q 046427 189 SLVGKTLAVMGFGK----------VGTEVARRAKGL-GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 189 ~l~gktvGIIGlG~----------IG~~vA~~l~~~-G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt 257 (595)
.+.|++|+|+|+-- -...+++.|... |.+|.+|||..... ....++++.+++||.|+++++ .
T Consensus 312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~------~~~~~~~~~~~~ad~vvi~t~-~ 384 (431)
T 3ojo_A 312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD------FVEHDMSHAVKDASLVLILSD-H 384 (431)
T ss_dssp HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT------TBCSTTHHHHTTCSEEEECSC-C
T ss_pred hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc------cccCCHHHHHhCCCEEEEecC-C
Confidence 47899999999852 467899999988 99999999987532 233478999999999999997 4
Q ss_pred hhccccccHHHHhcCCCceEEEeccCCc
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
++-+.+ +-+.+..|+ +.+|+|+ |+-
T Consensus 385 ~~f~~~-d~~~~~~~~-~~~i~D~-r~~ 409 (431)
T 3ojo_A 385 SEFKNL-SDSHFDKMK-HKVIFDT-KNV 409 (431)
T ss_dssp GGGTSC-CGGGGTTCS-SCEEEES-SCC
T ss_pred HHHhcc-CHHHHHhCC-CCEEEEC-CCC
Confidence 444433 444456676 6788885 543
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.018 Score=59.40 Aligned_cols=109 Identities=14% Similarity=0.094 Sum_probs=65.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHH--HHHc--C------Ccc-cCHHHhccccCEEEEeCCCChh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADR--ARAT--G------VGL-VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~--g------~~~-~~l~ell~~aD~V~l~~Plt~~ 259 (595)
.+|+|||.|.+|.+++..+...+. ++..||....... +.++ . +.. .+..+.+++||+|+++.+...
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~- 84 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ- 84 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC-
Confidence 589999999999999999886565 8999998642111 1111 1 111 145677999999999987432
Q ss_pred cccc-----c--cH-------HHHhcCCCceEEEeccCCchhc--HHHHHHH--HhcCCeeEE
Q 046427 260 TSKM-----F--ND-------EAFFKMKKGVRIVNVARGGVVD--EEALVRA--LDSGIISQA 304 (595)
Q Consensus 260 t~~l-----i--~~-------~~l~~mk~gailiN~arg~~vd--~~aL~~a--L~~g~i~ga 304 (595)
..++ + |. +.+....|++++++++ ..+| ...+.+. +...++.|.
T Consensus 85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~t~~~~k~s~~p~~rviG~ 145 (318)
T 1ez4_A 85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA--NPVDILTYATWKFSGFPKERVIGS 145 (318)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CcHHHHHHHHHHHcCCCHHHEEec
Confidence 2211 1 11 1233347899999973 3444 3333343 444456555
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.058 Score=54.88 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=53.1
Q ss_pred eecCCEEEEEeC---ChHHHHHHHHHhcCCCEEEEECCCC--cHHHHHHcCCcc-cCHHHhccccCEEEEeCCC
Q 046427 189 SLVGKTLAVMGF---GKVGTEVARRAKGLGMNVIAHDPYA--QADRARATGVGL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 189 ~l~gktvGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Pl 256 (595)
.+.|.+|++||= +++.++.+..+..+|++|....|.. +.+ ..+.|++. .++++++++||+|.. +-.
T Consensus 143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~-~~~~g~~~~~d~~eav~~aDvvy~-~~~ 214 (291)
T 3d6n_B 143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRD-VEVFKVDVFDDVDKGIDWADVVIW-LRL 214 (291)
T ss_dssp CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT-GGGGCEEEESSHHHHHHHCSEEEE-CCC
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCch-HHHCCCEEEcCHHHHhCCCCEEEE-eCc
Confidence 388999999997 8999999999999999999988743 222 22456553 489999999999998 654
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.021 Score=58.81 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=59.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC--cHHHH--H----H-----cCC--cccCHHHhccccCEEEEeC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA--QADRA--R----A-----TGV--GLVSFEEAISTADFISLHM 254 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~--~~~~a--~----~-----~g~--~~~~l~ell~~aD~V~l~~ 254 (595)
..++|+|||.|.+|..+|..+...|+ +|..||... ..... . . ... ...+-.+.+++||+|+++.
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa 86 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA 86 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence 45799999999999999999998888 999999873 11111 0 0 111 1122257799999999997
Q ss_pred CCC--h-hcc-ccc--c----H---HHHhcCCCceEEEecc
Q 046427 255 PLT--P-ATS-KMF--N----D---EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 255 Plt--~-~t~-~li--~----~---~~l~~mk~gailiN~a 282 (595)
... | .++ +++ | + +.+....|++++++++
T Consensus 87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs 127 (315)
T 3tl2_A 87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT 127 (315)
T ss_dssp SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 532 1 111 112 1 1 1233346888999987
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.018 Score=59.59 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=66.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHH--HHHH--cC------Ccc-cCHHHhccccCEEEEeCCCCh
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQAD--RARA--TG------VGL-VSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~--~a~~--~g------~~~-~~l~ell~~aD~V~l~~Plt~ 258 (595)
..+|+|||.|.+|.+++..+...++ ++..||...... .+.+ .. +.. .+..+.+++||+|+++.+...
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~ 88 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ 88 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 3689999999999999999886554 899999864211 1111 11 111 145677999999999987532
Q ss_pred hcccc-------ccH-------HHHhcCCCceEEEeccCCchhc--HHHHHHH--HhcCCeeEE
Q 046427 259 ATSKM-------FND-------EAFFKMKKGVRIVNVARGGVVD--EEALVRA--LDSGIISQA 304 (595)
Q Consensus 259 ~t~~l-------i~~-------~~l~~mk~gailiN~arg~~vd--~~aL~~a--L~~g~i~ga 304 (595)
..++ .|. +.+....|++++++++ ..+| ...+.+. +...++.|.
T Consensus 89 -k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~t~~~~k~s~~p~~rviG~ 149 (326)
T 2zqz_A 89 -KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDILTYATWKLSGFPKNRVVGS 149 (326)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CcHHHHHHHHHHHcCCCHHHEEEc
Confidence 2221 011 1233346899999973 3444 3333333 344456554
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.063 Score=56.11 Aligned_cols=128 Identities=23% Similarity=0.259 Sum_probs=86.6
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCC--hHHHHHHHHHh
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG--KVGTEVARRAK 212 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l~ 212 (595)
|.-.+|+|.|.-+....++ .+++=++.+.++. | .+.|.+|++||=| ++..+++..+.
T Consensus 140 A~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~~------------------g-~l~gl~va~vGD~~~rva~Sl~~~~~ 198 (359)
T 2w37_A 140 ARDSGVPVWNGLTDEWHPT--QMLADFMTVKENF------------------G-KLQGLTLTFMGDGRNNVANSLLVTGA 198 (359)
T ss_dssp HHHSSSCEEEEECSSCCHH--HHHHHHHHHHHHH------------------S-CCTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred HHhCCCCEEcCCCCCCCcc--HHHHHHHHHHHHh------------------C-CcCCeEEEEECCCccchHHHHHHHHH
Confidence 4456799999765433333 2333334333311 2 4789999999996 99999999999
Q ss_pred cCCCEEEEECCCC---cHHH-------HHHcCCc---ccCHHHhccccCEEEEeCCC--C----hh-----ccccccHHH
Q 046427 213 GLGMNVIAHDPYA---QADR-------ARATGVG---LVSFEEAISTADFISLHMPL--T----PA-----TSKMFNDEA 268 (595)
Q Consensus 213 ~~G~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aD~V~l~~Pl--t----~~-----t~~li~~~~ 268 (595)
.+|++|....|.. +.+. +++.|.. ..++++++++||+|..-.=. . ++ ....++.+.
T Consensus 199 ~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~el 278 (359)
T 2w37_A 199 ILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEA 278 (359)
T ss_dssp HHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHH
T ss_pred HcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHhhccccCHHH
Confidence 9999999988743 2211 1245643 34899999999999884320 0 00 135568888
Q ss_pred HhcCC---CceEEEeccC
Q 046427 269 FFKMK---KGVRIVNVAR 283 (595)
Q Consensus 269 l~~mk---~gailiN~ar 283 (595)
++.+| ++++|.-|.-
T Consensus 279 l~~ak~~~~dai~MHcLP 296 (359)
T 2w37_A 279 MKKTGTPDDQLIFMHCLP 296 (359)
T ss_dssp HHTTCCCGGGCEEEECSC
T ss_pred HHhhCCCCCCEEEECCCC
Confidence 88888 8999998863
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0091 Score=62.40 Aligned_cols=91 Identities=11% Similarity=0.050 Sum_probs=63.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC---c-HHHHHHcCCcccC---HHHhc----cccCEEEEeCCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA---Q-ADRARATGVGLVS---FEEAI----STADFISLHMPLT 257 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~---~-~~~a~~~g~~~~~---l~ell----~~aD~V~l~~Plt 257 (595)
.+.|++|.|+|.|.||..+++.++.+|.+|++.++.. . .+.++++|+..++ +.+.+ ...|+|+-++...
T Consensus 178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 257 (366)
T 2cdc_A 178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD 257 (366)
T ss_dssp SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence 4669999999999999999999999999999998865 2 3455666764321 11111 3478888887643
Q ss_pred hhccccccHHHHhcCCCceEEEeccC
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
... + ...+..|+++..+++++-
T Consensus 258 ~~~---~-~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 258 VNI---L-GNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp THH---H-HHHGGGEEEEEEEEECSC
T ss_pred HHH---H-HHHHHHHhcCCEEEEEec
Confidence 211 0 345566788888888763
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.14 Score=53.40 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=79.1
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-ChHHHHHHHHHhc
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-GKVGTEVARRAKG 213 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~~ 213 (595)
|...+|+|.|.-+....++ .+++=++.+.++.+ .|..+.|.+|++||= +++..+++..+..
T Consensus 114 A~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~~----------------~G~~l~glkva~vGD~~rva~Sl~~~~~~ 175 (355)
T 4a8p_A 114 ANCATIPVINGMSDYNHPT--QELGDLCTMVEHLP----------------EGKKLEDCKVVFVGDATQVCFSLGLITTK 175 (355)
T ss_dssp HHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC----------------TTCCGGGCEEEEESCCCHHHHHHHHHHHH
T ss_pred HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhh----------------cCCCCCCCEEEEECCCchhHHHHHHHHHH
Confidence 4456789999865433332 22222333333110 022488999999986 6889999999999
Q ss_pred CCCEEEEECCCC---cHHH-------HHHcCCc---ccCHHHhccccCEEEEeC--CCCh------h----c--cccccH
Q 046427 214 LGMNVIAHDPYA---QADR-------ARATGVG---LVSFEEAISTADFISLHM--PLTP------A----T--SKMFND 266 (595)
Q Consensus 214 ~G~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aD~V~l~~--Plt~------~----t--~~li~~ 266 (595)
||++|....|.. +... +.+.|.. ..+++ .++++|+|..-+ ...+ + . ...++.
T Consensus 176 ~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ 254 (355)
T 4a8p_A 176 MGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQ 254 (355)
T ss_dssp TTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHHHTTTTCBCH
T ss_pred cCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecccccCcchhhhhHHHHHHhccccccCH
Confidence 999999988743 2211 2344542 24788 999999998732 1000 0 0 134566
Q ss_pred HHHhcCCCceEEEecc
Q 046427 267 EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 267 ~~l~~mk~gailiN~a 282 (595)
+.++.+|++++|.-|.
T Consensus 255 ell~~ak~dai~MHcL 270 (355)
T 4a8p_A 255 EMMDRAGANCKFMHCL 270 (355)
T ss_dssp HHHHHHCTTCEEEECS
T ss_pred HHHHhcCCCcEEECCC
Confidence 6666667777776665
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.02 Score=59.66 Aligned_cols=90 Identities=22% Similarity=0.294 Sum_probs=65.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-------CHHH-hccccCEEEEeCCCChhcc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-------SFEE-AISTADFISLHMPLTPATS 261 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-------~l~e-ll~~aD~V~l~~Plt~~t~ 261 (595)
.|++|.|+|.|.+|...++.++.+|.+|++.++.. ..+.++++|...+ ++.+ +....|+|+-+++.++ .
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~ 256 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D 256 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence 47899999999999999999999999999998765 4566777886421 2222 2246899999887521 1
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
..+ ...++.|+++..++.++.
T Consensus 257 ~~~-~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 257 IDF-NIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp CCT-TTGGGGEEEEEEEEECCC
T ss_pred HHH-HHHHHHhcCCCEEEEecC
Confidence 112 234667888989998865
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.035 Score=58.01 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=48.1
Q ss_pred CEEEEEeCChHHH-HHHHHHhcCCCEEE-EECCCCc--HHHHHHcCC-c-ccCHHHhccc--cCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGT-EVARRAKGLGMNVI-AHDPYAQ--ADRARATGV-G-LVSFEEAIST--ADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~-~vA~~l~~~G~~V~-~~d~~~~--~~~a~~~g~-~-~~~l~ell~~--aD~V~l~~Pl 256 (595)
.+|||||+|.+|. .++..++.-++++. ++|++.. ...+.+.|. . +.++++++++ .|+|++|+|.
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~ 98 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVS 98 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCH
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence 5899999999995 56777777788866 4788763 234455663 3 4589999986 8999999993
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.023 Score=54.98 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=50.2
Q ss_pred eeecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCC-cc------cCHHHhccccCEEEEeCCCC
Q 046427 188 VSLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGV-GL------VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 188 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~-~~------~~l~ell~~aD~V~l~~Plt 257 (595)
..+.||+|.|.|. |.||+.+++.|...|++|++.++.... ......++ +. .++.+.+..+|+|+.+....
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 4689999999998 999999999999999999999987632 22333344 32 23467777888888777643
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.014 Score=62.72 Aligned_cols=104 Identities=12% Similarity=0.119 Sum_probs=66.9
Q ss_pred CEEEEEeC----ChHHHHHHHHHhcC--CCEEE-EECCCCcH--HHHHHcCCc----ccCHHHhcc--ccCEEEEeCCCC
Q 046427 193 KTLAVMGF----GKVGTEVARRAKGL--GMNVI-AHDPYAQA--DRARATGVG----LVSFEEAIS--TADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGl----G~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~----~~~l~ell~--~aD~V~l~~Plt 257 (595)
.+|||||+ |.||+..++.++.. +++++ ++|++... ..+.+.|+. +.+++++++ +.|+|++|+|..
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 100 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVA 100 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHH
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcH
Confidence 47999999 99999999999876 78865 57887532 334555664 358999996 699999999942
Q ss_pred hhccccccHHHHhcCCCc-------eEEEec-cCCchhcHHHHHHHHhcCCe
Q 046427 258 PATSKMFNDEAFFKMKKG-------VRIVNV-ARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~g-------ailiN~-arg~~vd~~aL~~aL~~g~i 301 (595)
. -..+ ....++.| .+++.- .--.+-+.++|+++.++..+
T Consensus 101 ~-H~~~----~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~ 147 (438)
T 3btv_A 101 S-HYEV----VMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGV 147 (438)
T ss_dssp H-HHHH----HHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTC
T ss_pred H-HHHH----HHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCC
Confidence 2 1111 12223344 466652 12233345667776655433
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.018 Score=62.21 Aligned_cols=67 Identities=13% Similarity=0.214 Sum_probs=49.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHH--HHcC-Cc-----cc---CHHHhccccCEEEEeCCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA--RATG-VG-----LV---SFEEAISTADFISLHMPLT 257 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g-~~-----~~---~l~ell~~aD~V~l~~Plt 257 (595)
.+|+++|+|.|.||+.+++.|...|.+|.++|++...... ...+ +. .. +++++++++|+|+.++|..
T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 4789999999999999999999999999999986532111 1111 11 11 3557788999999999964
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.076 Score=57.04 Aligned_cols=107 Identities=20% Similarity=0.300 Sum_probs=70.8
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE-EC-------CCC-cHHHH----HHcC-------CcccCHHHhcc-
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA-HD-------PYA-QADRA----RATG-------VGLVSFEEAIS- 245 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d-------~~~-~~~~a----~~~g-------~~~~~l~ell~- 245 (595)
|.++.|++|.|.|+|++|+.+|+.|...|.+|++ .| +.- ..+.. .+.| .+.++.++++.
T Consensus 230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~ 309 (440)
T 3aog_A 230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGL 309 (440)
T ss_dssp TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTC
T ss_pred CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcC
Confidence 4578999999999999999999999999999984 33 321 22211 1222 23345667764
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.||+++-|.. .+.|+.+....++ ..+|+-.+-+.+ ..++ .+.|.+..+
T Consensus 310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~-t~eA-~~iL~~~GI 357 (440)
T 3aog_A 310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPT-TPAA-DDILLEKGV 357 (440)
T ss_dssp CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHHTC
T ss_pred CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCcccc-CHHH-HHHHHHCCC
Confidence 7999999875 3456666666663 457778777776 3333 344444444
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0088 Score=62.49 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=47.0
Q ss_pred CEEEEEeCChHHHH-HHHHHhcC-CCEEE-EECCCCcHHHHHHc-CCc-ccCHHHhccc--cCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTE-VARRAKGL-GMNVI-AHDPYAQADRARAT-GVG-LVSFEEAIST--ADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~a~~~-g~~-~~~l~ell~~--aD~V~l~~Pl 256 (595)
.+|||||+|.||+. .+..++.. ++++. ++|++... .+.+. ++. +.++++++++ .|+|++|+|.
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 75 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL-SKERYPQASIVRSFKELTEDPEIDLIVVNTPD 75 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG-GGTTCTTSEEESCSHHHHTCTTCCEEEECSCG
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHHhCCCCceECCHHHHhcCCCCCEEEEeCCh
Confidence 47999999999997 67777655 78876 46877543 23333 343 3489999987 9999999994
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.042 Score=57.11 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=61.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-------------------cH-HHH----HHc--CCc--cc-
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-------------------QA-DRA----RAT--GVG--LV- 238 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------------~~-~~a----~~~--g~~--~~- 238 (595)
.|++++|.|||+|-+|..+|+.|...|. ++..+|... .. +.+ .+. +++ ..
T Consensus 31 kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~ 110 (340)
T 3rui_A 31 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK 110 (340)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred HHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEe
Confidence 5899999999999999999999999886 677877632 00 111 111 121 10
Q ss_pred ---------------------CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 239 ---------------------SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 239 ---------------------~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.+.++++++|+|+.|+- +.+++.+++..-.. .+..+|+.+
T Consensus 111 ~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD-n~~tR~lin~~c~~---~~~plI~aa 171 (340)
T 3rui_A 111 LSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNI---ENKTVINAA 171 (340)
T ss_dssp CCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-STGGGHHHHHHHHH---TTCEEEEEE
T ss_pred ccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC-CHHHHHHHHHHHHH---cCCcEEEee
Confidence 13577888999988876 55688888776553 344566654
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.012 Score=62.32 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=49.8
Q ss_pred CEEEEEeCCh---HHHHHHHHHhcCC-CEEEE--ECCCCc--HHHHHHcCCc----ccCHHHhccc-------cCEEEEe
Q 046427 193 KTLAVMGFGK---VGTEVARRAKGLG-MNVIA--HDPYAQ--ADRARATGVG----LVSFEEAIST-------ADFISLH 253 (595)
Q Consensus 193 ktvGIIGlG~---IG~~vA~~l~~~G-~~V~~--~d~~~~--~~~a~~~g~~----~~~l~ell~~-------aD~V~l~ 253 (595)
.+|||||+|. ||+..+..++..+ +++++ +|++.. ...+.+.|+. +.++++++++ .|+|++|
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i~ 92 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSIA 92 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEEE
T ss_pred ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEEC
Confidence 4899999999 9999988887654 78764 688763 3345667873 3489999975 9999999
Q ss_pred CCC
Q 046427 254 MPL 256 (595)
Q Consensus 254 ~Pl 256 (595)
+|.
T Consensus 93 tp~ 95 (398)
T 3dty_A 93 TPN 95 (398)
T ss_dssp SCG
T ss_pred CCc
Confidence 994
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.095 Score=55.99 Aligned_cols=107 Identities=20% Similarity=0.308 Sum_probs=72.4
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE-ECC-------CC-cHHHHHH----cC------CcccCHHHhc-cc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA-HDP-------YA-QADRARA----TG------VGLVSFEEAI-ST 246 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~-------~~-~~~~a~~----~g------~~~~~l~ell-~~ 246 (595)
|.++.|+||.|-|+|++|+..|+.|...|.+|++ .|. .- +.+...+ .| .+.++-++++ ..
T Consensus 216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~ 295 (424)
T 3k92_A 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKD 295 (424)
T ss_dssp TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSC
T ss_pred CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecc
Confidence 4569999999999999999999999999999864 343 22 2222211 12 2334556665 46
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
||+++-|.. .+.|+.+....++ -.+|+-.+-+.+ ..++ .+.|.+..|
T Consensus 296 ~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~-t~eA-~~iL~~rGI 342 (424)
T 3k92_A 296 CDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPT-TIDA-TKILNERGV 342 (424)
T ss_dssp CSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTC
T ss_pred ccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCC-CHHH-HHHHHHCCC
Confidence 999988874 4667777777674 457777788876 4333 455555555
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.05 Score=56.35 Aligned_cols=107 Identities=20% Similarity=0.179 Sum_probs=68.2
Q ss_pred EEEEEeCChHHHHHHHHHhc---------CCCEEEE-ECCCCc------HH--HHH--HcCCcc--cCHHHhcc--ccCE
Q 046427 194 TLAVMGFGKVGTEVARRAKG---------LGMNVIA-HDPYAQ------AD--RAR--ATGVGL--VSFEEAIS--TADF 249 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~---------~G~~V~~-~d~~~~------~~--~a~--~~g~~~--~~l~ell~--~aD~ 249 (595)
+|||||+|.||+.+++.++. .+.+|.+ +|++.. .. ... ..+..+ .+++++++ +.|+
T Consensus 4 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDv 83 (327)
T 3do5_A 4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDV 83 (327)
T ss_dssp EEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCSE
T ss_pred EEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCCE
Confidence 79999999999999999875 4778776 566531 11 111 112222 28999986 4899
Q ss_pred EEEeCCCChhccccccHHHHhcCCCceEEEeccCCchh-cHHHHHHHHhcCCe
Q 046427 250 ISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV-DEEALVRALDSGII 301 (595)
Q Consensus 250 V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v-d~~aL~~aL~~g~i 301 (595)
|+.|+|....... .-.-....|+.|.-++....+.+. ..+.|.++.++...
T Consensus 84 Vv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~ 135 (327)
T 3do5_A 84 LIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGV 135 (327)
T ss_dssp EEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTC
T ss_pred EEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCC
Confidence 9999995432212 112235557888888887666654 46677776665544
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.12 Score=53.31 Aligned_cols=94 Identities=18% Similarity=0.148 Sum_probs=67.6
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC---cHHH-------HHHcCCc---ccCHHHhccccCEEEEeC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA---QADR-------ARATGVG---LVSFEEAISTADFISLHM 254 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aD~V~l~~ 254 (595)
.+.|++|++||= +++..+.+..+..+|++|....|.. +.+. +.+.|.. ..++++++++||+|..-.
T Consensus 154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~ 233 (323)
T 3gd5_A 154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDV 233 (323)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEec
Confidence 378999999986 6888999999999999999987743 2211 1234532 248999999999998753
Q ss_pred CCCh--h----------ccccccHHHHhcCCCceEEEecc
Q 046427 255 PLTP--A----------TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 255 Plt~--~----------t~~li~~~~l~~mk~gailiN~a 282 (595)
=... + ....++.+.++.+|++++|.-|.
T Consensus 234 wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl 273 (323)
T 3gd5_A 234 WTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL 273 (323)
T ss_dssp CC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred eecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence 1110 0 12357888888889999888886
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.012 Score=61.88 Aligned_cols=63 Identities=22% Similarity=0.393 Sum_probs=46.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC--C---ccc---CHHHhccccCEEEE
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG--V---GLV---SFEEAISTADFISL 252 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g--~---~~~---~l~ell~~aD~V~l 252 (595)
.+.+|+|+|+|.|.+|+.+++.++.+|++|+++|++.... +.... . .+. .+.++++++|+|+.
T Consensus 9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p-~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~ 79 (377)
T 3orq_A 9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCP-CRYVAHEFIQAKYDDEKALNQLGQKCDVITY 79 (377)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCT-TGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCh-hhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence 4679999999999999999999999999999999865211 11110 0 111 26677888998854
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.031 Score=58.67 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=60.9
Q ss_pred CCEEEEEe-CChHHHHHHHHHhcCC-CEEEEECCCCcH--HHHHH----cC-----CcccCHHHhccccCEEEEeCCCCh
Q 046427 192 GKTLAVMG-FGKVGTEVARRAKGLG-MNVIAHDPYAQA--DRARA----TG-----VGLVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 192 gktvGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~----~g-----~~~~~l~ell~~aD~V~l~~Plt~ 258 (595)
..+|+|+| .|.||+.+++.|.... +++.+....... ..... .+ +...+ ++.+..+|+|++|+|...
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~~ 94 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHGT 94 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTTT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCchh
Confidence 35899999 9999999999998765 587776433211 11111 11 11112 556678999999999533
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhc-HHHHHHHHhc
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVD-EEALVRALDS 298 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd-~~aL~~aL~~ 298 (595)
++.. .-.. +.|+.+|+.+.---.+ .+...++...
T Consensus 95 -s~~~----a~~~-~aG~~VId~sa~~R~~~~~~y~~~y~~ 129 (359)
T 1xyg_A 95 -TQEI----IKEL-PTALKIVDLSADFRLRNIAEYEEWYGQ 129 (359)
T ss_dssp -HHHH----HHTS-CTTCEEEECSSTTTCSCHHHHHHHHSS
T ss_pred -HHHH----HHHH-hCCCEEEECCccccCCchhhhhhhhcC
Confidence 3222 1223 7789999998533233 3444444443
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0069 Score=58.92 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=43.7
Q ss_pred CEEEEEeCChHHHHHHHH--HhcCCCEEEE-ECCCCcHHHHHHcCCc---ccCHHHhcc-ccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARR--AKGLGMNVIA-HDPYAQADRARATGVG---LVSFEEAIS-TADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~--l~~~G~~V~~-~d~~~~~~~a~~~g~~---~~~l~ell~-~aD~V~l~~Pl 256 (595)
++++|||.|.+|+.+++. ... |+++++ +|.++........|+. ..+++++++ +.|.|++|+|.
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps 150 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR 150 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCc
Confidence 479999999999999995 335 888776 5655432111112322 336888886 59999999994
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.039 Score=52.24 Aligned_cols=66 Identities=17% Similarity=0.287 Sum_probs=47.8
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc--CHH----HhccccCEEEEeCCCCh
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV--SFE----EAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~--~l~----ell~~aD~V~l~~Plt~ 258 (595)
++|.|.| .|.||+.+++.|...|++|++.++..........+++.+ |+. +.+..+|+|+.+.....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~ 73 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISP 73 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSST
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCc
Confidence 4689999 599999999999999999999998763322111344322 322 67888999998886543
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.012 Score=61.06 Aligned_cols=91 Identities=9% Similarity=0.034 Sum_probs=59.7
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHHH------HHcC------Cc-ccCHHHhccccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADRA------RATG------VG-LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a------~~~g------~~-~~~l~ell~~aD~V~l~~P 255 (595)
..++|+|||.|.||..+|..+...|+ +|..+|........ .... +. ..+.++ +++||+|+++..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG 98 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG 98 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence 56799999999999999999987776 99999986521111 1101 11 125655 999999999875
Q ss_pred CCh---hcc-ccccH---------HHHhcCCCceEEEecc
Q 046427 256 LTP---ATS-KMFND---------EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 256 lt~---~t~-~li~~---------~~l~~mk~gailiN~a 282 (595)
... +++ +++.. +.+....|++++++++
T Consensus 99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 321 111 12211 1344457899999987
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.024 Score=57.84 Aligned_cols=112 Identities=16% Similarity=0.095 Sum_probs=70.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHH--H----H-H--c--CC--cc-cCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADR--A----R-A--T--GV--GL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a----~-~--~--g~--~~-~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|||.|.+|.++|..+...|. +|..||....... + . . . .. .. .+ .+.+++||+|+++.+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 479999999999999999987776 9999998753211 1 1 1 1 11 11 25 7899999999999864
Q ss_pred Ch---hcc-ccc--cH-------HHHhcCCCceEEEeccCCchhcHHH--HHHH--HhcCCeeEEE--Ee
Q 046427 257 TP---ATS-KMF--ND-------EAFFKMKKGVRIVNVARGGVVDEEA--LVRA--LDSGIISQAA--LD 307 (595)
Q Consensus 257 t~---~t~-~li--~~-------~~l~~mk~gailiN~arg~~vd~~a--L~~a--L~~g~i~ga~--lD 307 (595)
.. .++ +++ |. +.+....|++++++++ ..+|.-. +.+. +...++.|.+ ||
T Consensus 80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD 147 (294)
T 1oju_A 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD 147 (294)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence 32 111 111 11 2345568899999997 4455332 2222 2344666653 55
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.13 Score=52.61 Aligned_cols=127 Identities=15% Similarity=0.074 Sum_probs=83.5
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeec-CCEEEEEeC-ChHHHHHHHHHh
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLV-GKTLAVMGF-GKVGTEVARRAK 212 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~-gktvGIIGl-G~IG~~vA~~l~ 212 (595)
|...+|+|.|.-+....++ .+++=++.+.++ .| .+. |++|++||= +++..+.+..+.
T Consensus 109 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~------------------~g-~l~~gl~va~vGD~~~va~Sl~~~~~ 167 (307)
T 3tpf_A 109 ARYSKAPVINALSELYHPT--QVLGDLFTIKEW------------------NK-MQNGIAKVAFIGDSNNMCNSWLITAA 167 (307)
T ss_dssp HHHCSSCEEEEECSSCCHH--HHHHHHHHHHHT------------------TC-CGGGCCEEEEESCSSHHHHHHHHHHH
T ss_pred HHhCCCCEEeCCCCCcCcH--HHHHHHHHHHHH------------------hC-CCCCCCEEEEEcCCCccHHHHHHHHH
Confidence 4456788999765433332 222223333331 12 377 999999996 678899999999
Q ss_pred cCCCEEEEECCCC---cHHH---H----HHcCCc---ccCHHHhccccCEEEEeC--CCCh--h--------ccccccHH
Q 046427 213 GLGMNVIAHDPYA---QADR---A----RATGVG---LVSFEEAISTADFISLHM--PLTP--A--------TSKMFNDE 267 (595)
Q Consensus 213 ~~G~~V~~~d~~~---~~~~---a----~~~g~~---~~~l~ell~~aD~V~l~~--Plt~--~--------t~~li~~~ 267 (595)
.||++|....|.. +... + ++.|.. ..++++.+++||+|..-. .... + ....++.+
T Consensus 168 ~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e 247 (307)
T 3tpf_A 168 ILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEK 247 (307)
T ss_dssp HHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHH
T ss_pred HcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecCcccCCchhhHHHHHHHhcccccCHH
Confidence 9999999988743 2221 1 144543 248999999999998754 0111 0 12446888
Q ss_pred HHhcCCCceEEEecc
Q 046427 268 AFFKMKKGVRIVNVA 282 (595)
Q Consensus 268 ~l~~mk~gailiN~a 282 (595)
.++.+|++++|.-|.
T Consensus 248 ~l~~a~~~ai~mH~l 262 (307)
T 3tpf_A 248 AMSVANKDAILLHCL 262 (307)
T ss_dssp HHHHSCTTCEEEECS
T ss_pred HHHhcCCCcEEECCC
Confidence 888889999998887
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.035 Score=57.39 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=59.0
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHH------HHHH-----cCCc--c-cCHHHhccccCEEEEeC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQAD------RARA-----TGVG--L-VSFEEAISTADFISLHM 254 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~------~a~~-----~g~~--~-~~l~ell~~aD~V~l~~ 254 (595)
...++|+|||.|.+|..+|..+...|+ +|..||...... .... .... . .+. +.+++||+|+++.
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa 83 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA 83 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence 356799999999999999999987777 999999876321 1110 1222 1 244 8899999999997
Q ss_pred CCChhcccc-----c--cH-------HHHhcCCCceEEEecc
Q 046427 255 PLTPATSKM-----F--ND-------EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 255 Plt~~t~~l-----i--~~-------~~l~~mk~gailiN~a 282 (595)
+. +...++ + |. +.+....|++++++++
T Consensus 84 g~-p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt 124 (324)
T 3gvi_A 84 GV-PRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT 124 (324)
T ss_dssp SC-CCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred Cc-CCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 63 221221 1 11 1233345788888886
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=61.82 Aligned_cols=63 Identities=10% Similarity=0.180 Sum_probs=46.4
Q ss_pred EEEEEeCChHHHHHHHHHhcC--------CCEEE-EECCCCc--HHHHHHcCCc--ccCHHHhcc--ccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGL--------GMNVI-AHDPYAQ--ADRARATGVG--LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~--------G~~V~-~~d~~~~--~~~a~~~g~~--~~~l~ell~--~aD~V~l~~Pl 256 (595)
+|||||+|.||+.-++.++.. +.+|. ++|++.. ...+.+.|+. +.+++++++ +.|+|++|+|.
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~ 85 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPG 85 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCG
T ss_pred cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence 799999999999887776542 23655 4688763 2345667764 358999996 48999999994
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.024 Score=58.86 Aligned_cols=64 Identities=23% Similarity=0.367 Sum_probs=45.9
Q ss_pred EEEEEeCChHHHHHHHHHhcC-CCEEEE-ECCCCc--HHHHHHcCCc-------------------ccCHHHhccccCEE
Q 046427 194 TLAVMGFGKVGTEVARRAKGL-GMNVIA-HDPYAQ--ADRARATGVG-------------------LVSFEEAISTADFI 250 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~--~~~a~~~g~~-------------------~~~l~ell~~aD~V 250 (595)
+|||+|+|.||+.+++.+... ++++.+ +|+... ...++..|+. ..+.++++.++|+|
T Consensus 4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV 83 (334)
T 2czc_A 4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII 83 (334)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEE
Confidence 799999999999999999865 577765 455432 1223333321 12688888899999
Q ss_pred EEeCCCC
Q 046427 251 SLHMPLT 257 (595)
Q Consensus 251 ~l~~Plt 257 (595)
+.|+|..
T Consensus 84 ~~aTp~~ 90 (334)
T 2czc_A 84 VDATPGG 90 (334)
T ss_dssp EECCSTT
T ss_pred EECCCcc
Confidence 9999953
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.014 Score=58.13 Aligned_cols=106 Identities=14% Similarity=0.214 Sum_probs=66.2
Q ss_pred HHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-------------------cH-HH
Q 046427 171 ADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-------------------QA-DR 229 (595)
Q Consensus 171 ~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------------~~-~~ 229 (595)
+.++++-..|.... -..|.+++|.|+|+|.+|+.+|+.|...|. ++..+|+.. .. +.
T Consensus 9 y~Rq~~l~~~g~~~--q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~ 86 (251)
T 1zud_1 9 YSRQILLDDIALDG--QQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQV 86 (251)
T ss_dssp THHHHTSTTTHHHH--HHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHH
T ss_pred hhhhcchhhcCHHH--HHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHH
Confidence 34444444564321 135899999999999999999999999997 788887642 00 00
Q ss_pred ----HHHc--CCc--c----c---CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 230 ----ARAT--GVG--L----V---SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 230 ----a~~~--g~~--~----~---~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
..+. +++ . . +++++++++|+|+.|+. +.+++.++++..... +.-+|+++
T Consensus 87 ~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~ 150 (251)
T 1zud_1 87 SQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS 150 (251)
T ss_dssp HHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence 0111 111 1 1 24567788888888877 556777777655542 33455543
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.024 Score=59.21 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=58.8
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCC-CEEEEECCCCcH--HHHH----H---cCCcccCHHHhccccCEEEEeCCCChhcc
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLG-MNVIAHDPYAQA--DRAR----A---TGVGLVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~----~---~g~~~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.+|||+| .|.||+.+.+.|.... +++.+....... .... - ......++++ +..+|+|++|+|... +.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~-s~ 82 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGV-FA 82 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTH-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHH-HH
Confidence 4799999 7999999999998665 587765432211 1110 0 1112224444 578999999999543 33
Q ss_pred ccccHHHHhcCCCceEEEeccCCchhc-HHHHHHHH
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVVD-EEALVRAL 296 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~vd-~~aL~~aL 296 (595)
.+.. ..++.|+.+|+.+----.+ .+...++.
T Consensus 83 ~~a~----~~~~aG~~VId~Sa~~r~~~~~~y~~~y 114 (345)
T 2ozp_A 83 REFD----RYSALAPVLVDLSADFRLKDPELYRRYY 114 (345)
T ss_dssp HTHH----HHHTTCSEEEECSSTTSCSCHHHHHHHH
T ss_pred HHHH----HHHHCCCEEEEcCccccCCChHHHHhhh
Confidence 3321 2246788999987533233 34333443
|
| >1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.18 Score=51.95 Aligned_cols=127 Identities=12% Similarity=0.028 Sum_probs=79.6
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEE-----EeCChHHHHHHH
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAV-----MGFGKVGTEVAR 209 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGI-----IGlG~IG~~vA~ 209 (595)
|+-.+|+|.|.-+....++ .+++=++.+.++. |. ..+. .+|++ +|=+++..+.+.
T Consensus 131 A~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g~--------~~l~-l~ia~a~~~~vGD~rva~Sl~~ 190 (324)
T 1js1_X 131 IQHSGRPVFSMEAATRHPL--QSFADLITIEEYK---------KT--------ARPK-VVMTWAPHPRPLPQAVPNSFAE 190 (324)
T ss_dssp HHHSSSCEEESSCSSCCHH--HHHHHHHHHHHHC---------SS--------SSCE-EEEECCCCSSCCCSHHHHHHHH
T ss_pred HhhCCCCEEECCCCCCCcH--HHHHHHHHHHHHc---------CC--------CCee-EEEEEEcccccCCcchHHHHHH
Confidence 4456799999766443333 2333334333321 10 1356 79999 999999999999
Q ss_pred HHhcCCCEEEEECCCC-cHHHHHHcCCcc-cCHHHhccccCEEEEeCCCC--h---------hccccccHHHHhcCCCce
Q 046427 210 RAKGLGMNVIAHDPYA-QADRARATGVGL-VSFEEAISTADFISLHMPLT--P---------ATSKMFNDEAFFKMKKGV 276 (595)
Q Consensus 210 ~l~~~G~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt--~---------~t~~li~~~~l~~mk~ga 276 (595)
.+..||++|....|.. ........++.. .++++++++||+|..-.=.. . .....++.+.++.+| ++
T Consensus 191 ~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r~~~y~vt~e~l~~a~-~a 269 (324)
T 1js1_X 191 WMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTN-NA 269 (324)
T ss_dssp HHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBCHHHHTTSS-SC
T ss_pred HHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCccccchHHHhcCcccCHHHHHhcC-Cc
Confidence 9999999999998754 111111134543 48999999999998833210 0 012445666666666 66
Q ss_pred EEEecc
Q 046427 277 RIVNVA 282 (595)
Q Consensus 277 iliN~a 282 (595)
+|.-|.
T Consensus 270 i~MHcL 275 (324)
T 1js1_X 270 YFMHCL 275 (324)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 666665
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.019 Score=59.46 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=49.0
Q ss_pred CEEEEEeCC-hHHHHHHHHHhcC--CCEEE-EECCCCcH--HHHHHcCC-c-ccCHHHhcc--ccCEEEEeCCC
Q 046427 193 KTLAVMGFG-KVGTEVARRAKGL--GMNVI-AHDPYAQA--DRARATGV-G-LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG-~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~-~-~~~l~ell~--~aD~V~l~~Pl 256 (595)
.++||||+| .+|+..++.++.. ++++. ++|++... ..+.+.|+ . +.+++++++ +.|+|++|+|.
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 92 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV 92 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence 379999999 8999999999876 57765 57887632 33455666 3 458999996 58999999984
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.019 Score=60.03 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=46.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcC----Ccc---cCHHHhccccCEEEEeCCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATG----VGL---VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g----~~~---~~l~ell~~aD~V~l~~Plt 257 (595)
+.++|+|+|.|.+|+.+|+.|+. ..+|.+.|+.... +...+.. +.. .++.++++++|+|+.|+|..
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 34579999999999999999975 4688888876532 2222111 111 14778899999999999853
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.047 Score=59.48 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=70.3
Q ss_pred eecCCEEEEEeCCh----------HHHHHHHHHhcCCCEEEEECCCCcHHHH----HH-c-------CCcc-cCHHHhcc
Q 046427 189 SLVGKTLAVMGFGK----------VGTEVARRAKGLGMNVIAHDPYAQADRA----RA-T-------GVGL-VSFEEAIS 245 (595)
Q Consensus 189 ~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a----~~-~-------g~~~-~~l~ell~ 245 (595)
.+.|++|+|+|+-- -...+++.|...|.+|.+|||......+ .. . .+.+ .++.+.++
T Consensus 332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (481)
T 2o3j_A 332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR 411 (481)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence 58999999999843 6678999999999999999998753221 11 1 1233 36788999
Q ss_pred ccCEEEEeCCCChhccccccHHH-HhcCCCceEEEeccCCchhcHHHHH
Q 046427 246 TADFISLHMPLTPATSKMFNDEA-FFKMKKGVRIVNVARGGVVDEEALV 293 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~-l~~mk~gailiN~arg~~vd~~aL~ 293 (595)
+||.|++++. .++-+.+ +-+. .+.|+...+|+|+ |+ ++|.+.+.
T Consensus 412 ~ad~~vi~t~-~~~f~~~-~~~~~~~~~~~~~~i~D~-r~-~~~~~~~~ 456 (481)
T 2o3j_A 412 GAHAIVVLTE-WDEFVEL-NYSQIHNDMQHPAAIFDG-RL-ILDQKALR 456 (481)
T ss_dssp TCSEEEECSC-CGGGTTS-CHHHHHHHSCSSCEEEES-SS-CSCHHHHH
T ss_pred CCCEEEEcCC-cHHhhcc-CHHHHHHhcCCCCEEEEC-CC-CCCHHHHH
Confidence 9999999998 3444433 4443 3467776688886 54 34655443
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.018 Score=58.58 Aligned_cols=103 Identities=19% Similarity=0.275 Sum_probs=67.7
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhcCCCEEE-EECCCCcHHHHHHcCCcc-cCHHHhcc--ccCEEEEeCCCChhccccccH
Q 046427 192 GKTLAVMGF-GKVGTEVARRAKGLGMNVI-AHDPYAQADRARATGVGL-VSFEEAIS--TADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 192 gktvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~g~~~-~~l~ell~--~aD~V~l~~Plt~~t~~li~~ 266 (595)
.++|+|+|+ |++|+.+++.++..|++++ ..+|..... ...|+.. .+++++.+ .+|++++++| .+.+...+.+
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~Dv~Ii~vp-~~~~~~~~~e 83 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM--EVLGVPVYDTVKEAVAHHEVDASIIFVP-APAAADAALE 83 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHSCCSEEEECCC-HHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc--eECCEEeeCCHHHHhhcCCCCEEEEecC-HHHHHHHHHH
Confidence 468999999 9999999999998899854 577754111 1246654 37999998 8999999999 3445544433
Q ss_pred HHHhcCCCceE-EEeccCCc-hhcHHHHHHHHhcCCe
Q 046427 267 EAFFKMKKGVR-IVNVARGG-VVDEEALVRALDSGII 301 (595)
Q Consensus 267 ~~l~~mk~gai-liN~arg~-~vd~~aL~~aL~~g~i 301 (595)
. .+ .|.- +|..+.|= ..+++.+.++.++..+
T Consensus 84 a-~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi 116 (288)
T 1oi7_A 84 A-AH---AGIPLIVLITEGIPTLDMVRAVEEIKALGS 116 (288)
T ss_dssp H-HH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred H-HH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 2 22 2322 44455442 2245577777766544
|
| >4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.12 Score=52.80 Aligned_cols=65 Identities=12% Similarity=0.209 Sum_probs=51.7
Q ss_pred eecCCEEEEEeC---ChHHHHHHHHHhcC-CCEEEEECCCC---cH---HHHHHcCCcc---cCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGF---GKVGTEVARRAKGL-GMNVIAHDPYA---QA---DRARATGVGL---VSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGl---G~IG~~vA~~l~~~-G~~V~~~d~~~---~~---~~a~~~g~~~---~~l~ell~~aD~V~l~ 253 (595)
.+.|.+|++||= |++..+++..+..| |++|....|.. +. +.+++.|... .++++++++||+|..-
T Consensus 148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 225 (306)
T 4ekn_B 148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVT 225 (306)
T ss_dssp CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEEC
T ss_pred CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeC
Confidence 378999999998 58999999999999 99999988742 22 2234556543 4899999999999874
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.022 Score=58.43 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=47.2
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcCCCEEEE-ECCCCcHHHH-HHc-CCc-ccCHHHhc----------cccCEEEEeCCC
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGLGMNVIA-HDPYAQADRA-RAT-GVG-LVSFEEAI----------STADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~-~d~~~~~~~a-~~~-g~~-~~~l~ell----------~~aD~V~l~~Pl 256 (595)
.++||||+ |.||+..++.++..+.++.+ +|++.....+ ... +.. +.++++++ .+.|+|++|+|.
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~ 82 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPN 82 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCG
T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCc
Confidence 48999999 78999999999988888664 7877643222 222 233 34788887 679999999983
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.016 Score=61.16 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=49.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--CCEEEE-ECCCCc--HHHHHHcCCcc-cCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--GMNVIA-HDPYAQ--ADRARATGVGL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~-~d~~~~--~~~a~~~g~~~-~~l~ell~~aD~V~l~~Pl 256 (595)
.+|||||.| +|+.-++.++.. ++++.+ +|++.. ...+++.|+.. .++++++.+.|++++++|.
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~ 76 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRS 76 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC-
T ss_pred CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCC
Confidence 479999999 799888877765 678775 688763 35567788864 4899999999999999984
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.019 Score=61.34 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=49.1
Q ss_pred CEEEEEeCCh---HHHHHHHHHhcCC-CEEE--EECCCCc--HHHHHHcCCc----ccCHHHhccc-------cCEEEEe
Q 046427 193 KTLAVMGFGK---VGTEVARRAKGLG-MNVI--AHDPYAQ--ADRARATGVG----LVSFEEAIST-------ADFISLH 253 (595)
Q Consensus 193 ktvGIIGlG~---IG~~vA~~l~~~G-~~V~--~~d~~~~--~~~a~~~g~~----~~~l~ell~~-------aD~V~l~ 253 (595)
.+|||||+|. ||+..+..++..+ ++++ ++|++.. ...+++.|+. +.++++++++ .|+|++|
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~ 117 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIV 117 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEEC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEEC
Confidence 4899999999 9999888877655 6776 4688763 3345667773 3489999986 9999999
Q ss_pred CCCC
Q 046427 254 MPLT 257 (595)
Q Consensus 254 ~Plt 257 (595)
+|..
T Consensus 118 tp~~ 121 (417)
T 3v5n_A 118 TPNH 121 (417)
T ss_dssp SCTT
T ss_pred CCcH
Confidence 9943
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.03 Score=58.69 Aligned_cols=88 Identities=23% Similarity=0.327 Sum_probs=64.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc----C---HHHhccccCEEEEeCCCChhccc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV----S---FEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~----~---l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.|.+|.|+|.|.+|...++.++.+|.+|++.++.. ..+.++++|...+ + ++++....|+|+-++.... +
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~-~-- 270 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH-N-- 270 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC-C--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHH-H--
Confidence 47899999999999999999999999999998765 4566677786421 1 2233356788888876321 1
Q ss_pred cccHHHHhcCCCceEEEeccC
Q 046427 263 MFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~ar 283 (595)
-...++.|+++..++.++.
T Consensus 271 --~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 271 --LDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp --HHHHHTTEEEEEEEEECCC
T ss_pred --HHHHHHHhccCCEEEEecc
Confidence 1345667888888888764
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.02 Score=59.95 Aligned_cols=86 Identities=17% Similarity=0.103 Sum_probs=52.9
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCC-CEEEEE--CCCCc-HHHHHHcC---------------CcccCHHHhcc-ccCEEE
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLG-MNVIAH--DPYAQ-ADRARATG---------------VGLVSFEEAIS-TADFIS 251 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G-~~V~~~--d~~~~-~~~a~~~g---------------~~~~~l~ell~-~aD~V~ 251 (595)
.+|||+| .|.||+.+++.|.... ++|.+. ++... .......+ +...+++++++ ++|+|+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~ 88 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF 88 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence 4899999 9999999999998664 687665 33221 11111111 11124556657 899999
Q ss_pred EeCCCChhccccccHHHHhcCCCceEEEeccC
Q 046427 252 LHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 252 l~~Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
+|+|.. .+..+.. ..++.|+.+|+.+-
T Consensus 89 ~atp~~-~~~~~a~----~~~~aG~~VId~s~ 115 (354)
T 1ys4_A 89 SALPSD-LAKKFEP----EFAKEGKLIFSNAS 115 (354)
T ss_dssp ECCCHH-HHHHHHH----HHHHTTCEEEECCS
T ss_pred ECCCch-HHHHHHH----HHHHCCCEEEECCc
Confidence 999842 2332221 12356788888764
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.023 Score=58.40 Aligned_cols=64 Identities=20% Similarity=0.315 Sum_probs=46.9
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcCCCEEEE-ECCCCcHHH-HHHc-CCc-ccCHHHhc-----------cccCEEEEeCCC
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGLGMNVIA-HDPYAQADR-ARAT-GVG-LVSFEEAI-----------STADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~-~d~~~~~~~-a~~~-g~~-~~~l~ell-----------~~aD~V~l~~Pl 256 (595)
.++||||+ |.||+..++.++..+.++++ +|++..... +... +.. +.++++++ .+.|+|++|+|.
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~ 83 (318)
T 3oa2_A 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN 83 (318)
T ss_dssp CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence 48999999 79999999999988888665 687764322 2222 233 34788887 578999999983
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.075 Score=55.46 Aligned_cols=87 Identities=25% Similarity=0.264 Sum_probs=60.3
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc--------CHHHhcc-----ccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV--------SFEEAIS-----TADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~--------~l~ell~-----~aD~V~l~~P 255 (595)
.|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|...+ ++.+.+. ..|+|+-++.
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 271 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG 271 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 47899999999999999999999999 899998766 4566677776321 1322222 3677777765
Q ss_pred CChhccccccHHHHhcCCCc-eEEEecc
Q 046427 256 LTPATSKMFNDEAFFKMKKG-VRIVNVA 282 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~g-ailiN~a 282 (595)
..+ + -...+..++++ ..++.++
T Consensus 272 ~~~-~----~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 272 NVG-V----MRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp CHH-H----HHHHHHTBCTTTCEEEECS
T ss_pred CHH-H----HHHHHHHhhcCCcEEEEEc
Confidence 311 1 13445667777 7777665
|
| >3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.024 Score=57.74 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=44.5
Q ss_pred cCccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC
Q 046427 519 LEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572 (595)
Q Consensus 519 ~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~ 572 (595)
.....|.+..+|+||+|+.|++.|.++|+||..++-......+.-.|.++++.+
T Consensus 8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 61 (292)
T 3lou_A 8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHAT 61 (292)
T ss_dssp CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEcc
Confidence 344677888999999999999999999999999998755566677788776544
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.17 E-value=0.073 Score=55.53 Aligned_cols=87 Identities=26% Similarity=0.269 Sum_probs=58.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCcc-cC-------HHHhcc-----ccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGL-VS-------FEEAIS-----TADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~-~~-------l~ell~-----~aD~V~l~~P 255 (595)
.|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|... ++ +.+.+. ..|+|+-++.
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 270 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG 270 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence 47899999999999999999999999 899999766 445667777632 11 222222 3677776665
Q ss_pred CChhccccccHHHHhcCCCc-eEEEecc
Q 046427 256 LTPATSKMFNDEAFFKMKKG-VRIVNVA 282 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~g-ailiN~a 282 (595)
..+ + -...++.++++ ..++.++
T Consensus 271 ~~~-~----~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 271 RLD-T----MVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp CHH-H----HHHHHHHBCTTTCEEEECS
T ss_pred CHH-H----HHHHHHHhhcCCcEEEEec
Confidence 211 1 13345556666 6666664
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.022 Score=58.44 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=71.9
Q ss_pred eecCCEEEEE-eC-ChHHHHHHHHHhcCCCEEE-EECCCCcHHHHHHcCCccc-CHHHhcc--ccCEEEEeCCCChhccc
Q 046427 189 SLVGKTLAVM-GF-GKVGTEVARRAKGLGMNVI-AHDPYAQADRARATGVGLV-SFEEAIS--TADFISLHMPLTPATSK 262 (595)
Q Consensus 189 ~l~gktvGII-Gl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~g~~~~-~l~ell~--~aD~V~l~~Plt~~t~~ 262 (595)
-+..+++.|| |+ |+.|+.+++.++..|++++ ..||..... .-.|+... +++|+.+ ..|++++++|. +....
T Consensus 10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~~ 86 (305)
T 2fp4_A 10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGK--THLGLPVFNTVKEAKEQTGATASVIYVPP-PFAAA 86 (305)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHH
T ss_pred HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcc--eECCeeeechHHHhhhcCCCCEEEEecCH-HHHHH
Confidence 4667889999 99 9999999999999999854 567753111 12466544 7999998 89999999993 44444
Q ss_pred cccHHHHhcCCCceEEEeccCCch-hcHHHHHHHHhcC-Ce
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGV-VDEEALVRALDSG-II 301 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~-vd~~aL~~aL~~g-~i 301 (595)
.+.+. .+ ..- ..+++.+-|-- -++..+.+..++. .+
T Consensus 87 ~~~e~-i~-~Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi 124 (305)
T 2fp4_A 87 AINEA-ID-AEV-PLVVCITEGIPQQDMVRVKHRLLRQGKT 124 (305)
T ss_dssp HHHHH-HH-TTC-SEEEECCCCCCHHHHHHHHHHHTTCSSC
T ss_pred HHHHH-HH-CCC-CEEEEECCCCChHHHHHHHHHHHhcCCc
Confidence 44332 22 121 23456666532 2455788888776 54
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.035 Score=57.17 Aligned_cols=108 Identities=17% Similarity=0.154 Sum_probs=67.9
Q ss_pred CCEEEEEeCChHHHH-HHHHHhcCCCEEEEECCCCc---HHHHHHcCCccc---CHHHhc-cccCEEEEeC--CC-Chhc
Q 046427 192 GKTLAVMGFGKVGTE-VARRAKGLGMNVIAHDPYAQ---ADRARATGVGLV---SFEEAI-STADFISLHM--PL-TPAT 260 (595)
Q Consensus 192 gktvGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~---~~~a~~~g~~~~---~l~ell-~~aD~V~l~~--Pl-t~~t 260 (595)
.|+|.|||+|.+|.+ +|+.|+..|++|.++|.... .+...+.|+... +.+++. .++|+|++.- |. +|+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~ 83 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV 83 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence 478999999999996 99999999999999997642 233456687543 445555 5899999853 32 2221
Q ss_pred c-------ccccHHH-Hhc--CCCc-eEEEeccCCchhcHHHHHHHHhcC
Q 046427 261 S-------KMFNDEA-FFK--MKKG-VRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 261 ~-------~li~~~~-l~~--mk~g-ailiN~arg~~vd~~aL~~aL~~g 299 (595)
. .++.+.+ +.. ++.. .+-|-=+.|+.-...-+...|+..
T Consensus 84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 133 (326)
T 3eag_A 84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA 133 (326)
T ss_dssp HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 1 1333322 332 3322 344444468775566566666653
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.03 Score=57.72 Aligned_cols=88 Identities=24% Similarity=0.339 Sum_probs=60.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc------CHHHhc----cccCEEEEeCCCChh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV------SFEEAI----STADFISLHMPLTPA 259 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell----~~aD~V~l~~Plt~~ 259 (595)
.|++|.|+|.|.||...++.++.+|.+|++.+++. ..+.++++|...+ ++.+.+ ...|+|+-++...+
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~- 242 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKP- 242 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHH-
Confidence 47899999999999999999999999999999865 3455666775321 222221 35777777765322
Q ss_pred ccccccHHHHhcCCCceEEEeccC
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~ar 283 (595)
+ -...+..|+++..++.++.
T Consensus 243 ~----~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 243 A----FQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp H----HHHHHHHEEEEEEEEECCC
T ss_pred H----HHHHHHHhhcCCEEEEecc
Confidence 1 1344566777777777764
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.22 Score=51.90 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=82.1
Q ss_pred hhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccc---ccccceeeecCCEEEEEeCC-hHHHHHH
Q 046427 133 SAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQ---RNKYVGVSLVGKTLAVMGFG-KVGTEVA 208 (595)
Q Consensus 133 ~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~---~~~~~g~~l~gktvGIIGlG-~IG~~vA 208 (595)
+.|...+|+|.|.-+....++ .+++=++.+.+++ |.+. ........|.|.+|++||=+ ++..+++
T Consensus 137 ~lA~~s~vPVINag~d~~HPt--QaLaDl~TI~E~~---------G~~~~~~~~~~~~~~l~glkva~vGD~~nva~Sl~ 205 (353)
T 3sds_A 137 NLAKHSSVPVINALCDTFHPL--QAIADFLTIHESF---------ASQSATHGTHPSSLGLEGLKIAWVGDANNVLFDLA 205 (353)
T ss_dssp HHHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHT---------C--------CTTCCSCTTCEEEEESCCCHHHHHHH
T ss_pred HHHhhCCCCEEECCCCCCCcH--HHHHHHHHHHHHh---------CCCcccccccccccccCCCEEEEECCCchHHHHHH
Confidence 334557899999854332222 2233333333322 2210 00112334899999999975 6888888
Q ss_pred HHHhcCCCEEEEECCCC---cHH---HHHH------cC--Cc-ccCHHHhccccCEEEEeC--CCChh----------cc
Q 046427 209 RRAKGLGMNVIAHDPYA---QAD---RARA------TG--VG-LVSFEEAISTADFISLHM--PLTPA----------TS 261 (595)
Q Consensus 209 ~~l~~~G~~V~~~d~~~---~~~---~a~~------~g--~~-~~~l~ell~~aD~V~l~~--Plt~~----------t~ 261 (595)
..+..||++|....|.. +.+ .+++ .| +. ..+++|++++||+|..-+ +...+ ..
T Consensus 206 ~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvytd~w~smg~E~~~~~r~~~~~~ 285 (353)
T 3sds_A 206 IAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKD 285 (353)
T ss_dssp HHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEECCC--------CHHHHHHTTT
T ss_pred HHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEeCCccCCchhhHHHHHHHHhhC
Confidence 88899999999988743 222 1122 13 22 248999999999998743 22111 11
Q ss_pred ccccHHHHhc--CCCceEEEecc
Q 046427 262 KMFNDEAFFK--MKKGVRIVNVA 282 (595)
Q Consensus 262 ~li~~~~l~~--mk~gailiN~a 282 (595)
..++.+.++. +|++++|.-|.
T Consensus 286 y~vt~ell~~~~ak~~ai~MHcL 308 (353)
T 3sds_A 286 FKVTSELAKRGGAKENWKFMHCL 308 (353)
T ss_dssp CCBCHHHHHHHTCCTTCEEEECS
T ss_pred ceecHHHHhhcccCCCcEEECCC
Confidence 3467777776 77888877775
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.048 Score=57.69 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=60.5
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc------CHHH----hcc--ccCEEEEeCC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV------SFEE----AIS--TADFISLHMP 255 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~------~l~e----ll~--~aD~V~l~~P 255 (595)
-.|.+|.|+|.|.+|...++.++.+|. +|++.|... ..+.++++|...+ ++.+ +.. ..|+|+-++.
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g 291 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATG 291 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCC
Confidence 357899999999999999999999999 999999766 4466777776421 2222 221 4788877776
Q ss_pred CChhccccccHHHHhcC----CCceEEEeccC
Q 046427 256 LTPATSKMFNDEAFFKM----KKGVRIVNVAR 283 (595)
Q Consensus 256 lt~~t~~li~~~~l~~m----k~gailiN~ar 283 (595)
....+. ...+..+ +++..++.++-
T Consensus 292 ~~~~~~----~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 292 VPQLVW----PQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp CHHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred CcHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence 321121 1222333 77777777763
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.088 Score=54.94 Aligned_cols=87 Identities=25% Similarity=0.208 Sum_probs=58.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc-C-------HHHhcc-----ccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV-S-------FEEAIS-----TADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~-~-------l~ell~-----~aD~V~l~~P 255 (595)
.|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|+..+ + +.+.+. ..|+|+-++.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G 274 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 274 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence 47899999999999999999999999 899998766 4466677776421 1 222221 3677776665
Q ss_pred CChhccccccHHHHhcCCCc-eEEEecc
Q 046427 256 LTPATSKMFNDEAFFKMKKG-VRIVNVA 282 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~g-ailiN~a 282 (595)
. +++ -...++.++++ ..++.++
T Consensus 275 ~-~~~----~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 275 T-AQT----LKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp C-HHH----HHHHHHTBCTTTCEEEECC
T ss_pred C-HHH----HHHHHHHhhcCCCEEEEEC
Confidence 2 111 13345566766 6666664
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.017 Score=59.83 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=56.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc------CHHHhcc------ccCEEEEeCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV------SFEEAIS------TADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~------~l~ell~------~aD~V~l~~Pl 256 (595)
.|++|.|+|.|.||...++.++.+|. +|++.++.. ..+.++++|...+ ++.+.+. ..|+|+-+++.
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~ 246 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA 246 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 68899999999999999999999999 999999865 3345566665321 2222111 35666666652
Q ss_pred ChhccccccHHHHhcCCCceEEEecc
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.+ + -...+..|+++..++.++
T Consensus 247 ~~-~----~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 247 PK-A----LEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp HH-H----HHHHHHHEEEEEEEEECC
T ss_pred HH-H----HHHHHHHHhcCCEEEEEc
Confidence 11 1 123344556666666654
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.036 Score=51.78 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=47.8
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcHHHH-HHcCCcc--------cCHHHhccccCEEEEeCCCC
Q 046427 192 GKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQADRA-RATGVGL--------VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~g~~~--------~~l~ell~~aD~V~l~~Plt 257 (595)
++++.|.|. |.||+.+++.|...|.+|++.++....... ...++.. .++.++++.+|+|+.+....
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~ 78 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence 478999998 999999999999999999999886532110 0123321 13567788899998887643
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.08 Score=55.21 Aligned_cols=87 Identities=23% Similarity=0.185 Sum_probs=60.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc--------CHHHhcc-----ccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV--------SFEEAIS-----TADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~--------~l~ell~-----~aD~V~l~~P 255 (595)
.|++|.|+|.|.||...++.++.+|. +|++.++.. ..+.++++|+..+ ++.+.+. ..|+|+-++.
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g 270 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG 270 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 47899999999999999999999998 899998766 4566777776421 1222222 4677777765
Q ss_pred CChhccccccHHHHhcCCCc-eEEEecc
Q 046427 256 LTPATSKMFNDEAFFKMKKG-VRIVNVA 282 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~g-ailiN~a 282 (595)
. +++ -...++.++++ ..++.++
T Consensus 271 ~-~~~----~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 271 R-IET----MMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp C-HHH----HHHHHHTBCTTTCEEEECC
T ss_pred C-HHH----HHHHHHHHhcCCCEEEEEc
Confidence 2 111 13445667777 7777665
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.027 Score=60.24 Aligned_cols=95 Identities=21% Similarity=0.229 Sum_probs=58.6
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE-ECCCC-------------cHH---HH-HHcC-------CcccCHH
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA-HDPYA-------------QAD---RA-RATG-------VGLVSFE 241 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~-------------~~~---~a-~~~g-------~~~~~l~ 241 (595)
|.++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+. +.+ .. .+.| .+.++.+
T Consensus 207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~ 286 (421)
T 2yfq_A 207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDE 286 (421)
T ss_dssp TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCcc
Confidence 4468999999999999999999999999999994 34441 111 11 1112 1233334
Q ss_pred Hhcc-ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchh
Q 046427 242 EAIS-TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287 (595)
Q Consensus 242 ell~-~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v 287 (595)
+++. .||+++-|.+ .+.|+.+....+ ...+|+-.+-+.+-
T Consensus 287 ~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t 327 (421)
T 2yfq_A 287 EFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT 327 (421)
T ss_dssp --------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC
T ss_pred chhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC
Confidence 5443 6899988864 456777777777 35677888888764
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.15 Score=54.44 Aligned_cols=107 Identities=25% Similarity=0.296 Sum_probs=69.8
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhc-CCCEEEE--------ECCCC-cHHH---H-HHcC-------CcccCHHHhcc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKG-LGMNVIA--------HDPYA-QADR---A-RATG-------VGLVSFEEAIS 245 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~-~G~~V~~--------~d~~~-~~~~---a-~~~g-------~~~~~l~ell~ 245 (595)
|.++.|+++.|.|+|++|+..|+.|.. .|.+|++ |||.- ..+. . .+.+ .+..+.++++.
T Consensus 204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~ 283 (415)
T 2tmg_A 204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE 283 (415)
T ss_dssp TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTT
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhc
Confidence 457999999999999999999999998 9999984 33321 2211 1 1112 13335566664
Q ss_pred -ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 246 -TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 246 -~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.||+++-|.. .+.|+.+....++ ..+|+-.+-+.+ ..++ .+.|.+..+
T Consensus 284 ~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi 332 (415)
T 2tmg_A 284 LDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPT-TPEA-DEILSRRGI 332 (415)
T ss_dssp CSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCB-CHHH-HHHHHHTTC
T ss_pred CCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCccc-CHHH-HHHHHHCCC
Confidence 7999988875 3456777777673 457777777775 3333 233444444
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.017 Score=58.64 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=46.1
Q ss_pred CEEEEEeCChHHHHHHHHHhc----CCCEEEE-ECCCCcHHHHHHcCCcccCHHHhcc--ccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKG----LGMNVIA-HDPYAQADRARATGVGLVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~----~G~~V~~-~d~~~~~~~a~~~g~~~~~l~ell~--~aD~V~l~~Pl 256 (595)
.+|||||+|.||+..++.+.. -++++.+ +|+... +...|+...+++++++ +.|+|++|+|.
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~---a~~~g~~~~~~~ell~~~~vD~V~i~tp~ 75 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL---GSLDEVRQISLEDALRSQEIDVAYICSES 75 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC---CEETTEEBCCHHHHHHCSSEEEEEECSCG
T ss_pred ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH---HHHcCCCCCCHHHHhcCCCCCEEEEeCCc
Confidence 379999999999999988875 3577664 676431 2234555568999997 68999999994
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.026 Score=58.20 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=45.6
Q ss_pred CEEEEEeCChHHH-HHHHHHhcC-CCEEEE-ECCCCcHHHHHHcCCc-ccCHHHhccc---cCEEEEeCC
Q 046427 193 KTLAVMGFGKVGT-EVARRAKGL-GMNVIA-HDPYAQADRARATGVG-LVSFEEAIST---ADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~-~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~g~~-~~~l~ell~~---aD~V~l~~P 255 (595)
.+|||||+|.||+ ..++.++.. +++|.+ +|++.. ..|+. +.++++++++ .|+|++|+|
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~-----~~g~~~~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT-----VEGVNSYTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC-----CTTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh-----hcCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence 4899999999998 688888865 678665 677643 23554 3489999876 899999999
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.035 Score=59.72 Aligned_cols=64 Identities=14% Similarity=0.263 Sum_probs=47.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEE-EECCCCcH-HH-HH---HcCC---c-cc----CHHHhcc--ccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVI-AHDPYAQA-DR-AR---ATGV---G-LV----SFEEAIS--TADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~-~~-a~---~~g~---~-~~----~l~ell~--~aD~V~l~~P 255 (595)
.+|||||+|.||+..++.++.. ++++. ++|++... +. +. +.|+ . +. +++++++ +.|+|++|+|
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 100 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP 100 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999999999988875 67865 57887532 22 11 2352 3 34 8999997 5899999999
Q ss_pred C
Q 046427 256 L 256 (595)
Q Consensus 256 l 256 (595)
.
T Consensus 101 ~ 101 (444)
T 2ixa_A 101 W 101 (444)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.06 Score=55.31 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=61.2
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcCC--CEEEEECCCCcHHHHHHc--C-----Ccc----cCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGLG--MNVIAHDPYAQADRARAT--G-----VGL----VSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~--g-----~~~----~~l~ell~~aD~V~l~~Plt~ 258 (595)
.+|+|+|. |.+|..++..|...| .+|..+|.......+.++ . +.. .++++.+++||+|+++.....
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~ 80 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence 37999998 999999999998777 689999987622222222 1 111 257788999999999986432
Q ss_pred ---hcc-ccc--cH-------HHHhcCCCceEEEeccCCchhcHH
Q 046427 259 ---ATS-KMF--ND-------EAFFKMKKGVRIVNVARGGVVDEE 290 (595)
Q Consensus 259 ---~t~-~li--~~-------~~l~~mk~gailiN~arg~~vd~~ 290 (595)
+++ .++ |. +.+....|++++++++ ..+|.-
T Consensus 81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s--NPv~~~ 123 (314)
T 1mld_A 81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNST 123 (314)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CCcchh
Confidence 111 110 11 1223345788999973 345543
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=57.09 Aligned_cols=64 Identities=13% Similarity=0.243 Sum_probs=44.6
Q ss_pred CEEEEEeCChHHHHHHHHH--hcCCCEEEE-ECCCCc-HHHH-HHcCCcc---cCHHHhccc--cCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRA--KGLGMNVIA-HDPYAQ-ADRA-RATGVGL---VSFEEAIST--ADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l--~~~G~~V~~-~d~~~~-~~~a-~~~g~~~---~~l~ell~~--aD~V~l~~Pl 256 (595)
++++|+|.|++|+.+++.+ ...|+++.+ +|.++. ..-. .-.|+.. .++++++++ .|.+++|+|.
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs 158 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPS 158 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCc
Confidence 4799999999999999973 456889876 566543 2111 1235543 367788874 9999999994
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.057 Score=58.80 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=70.6
Q ss_pred CCEEEEEeCChHH--HHHHHHHh---cC-CCEEEEECCCCcH-HH----HH----HcCC----cc-cCHHHhccccCEEE
Q 046427 192 GKTLAVMGFGKVG--TEVARRAK---GL-GMNVIAHDPYAQA-DR----AR----ATGV----GL-VSFEEAISTADFIS 251 (595)
Q Consensus 192 gktvGIIGlG~IG--~~vA~~l~---~~-G~~V~~~d~~~~~-~~----a~----~~g~----~~-~~l~ell~~aD~V~ 251 (595)
.++|+|||.|.+| .++|..+. ++ |.+|..||..... +. .. ..+. .. .++++.+++||+|+
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI 82 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 82 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence 4689999999974 55566654 33 8899999987521 11 11 1111 12 26888999999999
Q ss_pred EeCCCC---------------------hhcc-------cc---------cc--HHHHhcCCCceEEEeccCCchhcHHHH
Q 046427 252 LHMPLT---------------------PATS-------KM---------FN--DEAFFKMKKGVRIVNVARGGVVDEEAL 292 (595)
Q Consensus 252 l~~Plt---------------------~~t~-------~l---------i~--~~~l~~mk~gailiN~arg~~vd~~aL 292 (595)
+++|.. .+|. ++ +. .+.+....|+++++|++---=+-..++
T Consensus 83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~ 162 (480)
T 1obb_A 83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV 162 (480)
T ss_dssp ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence 999741 1110 11 00 123455679999999975433345555
Q ss_pred HHHHhcCCeeEEE
Q 046427 293 VRALDSGIISQAA 305 (595)
Q Consensus 293 ~~aL~~g~i~ga~ 305 (595)
.+ +...++.|.+
T Consensus 163 ~k-~p~~rviG~c 174 (480)
T 1obb_A 163 TR-TVPIKAVGFC 174 (480)
T ss_dssp HH-HSCSEEEEEC
T ss_pred HH-CCCCcEEecC
Confidence 45 6777887764
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.03 Score=58.64 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=58.7
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCC------CEEEEEC-CCCc---HHH----HHH-cCCc--ccCHHHhccccCEEEEeC
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLG------MNVIAHD-PYAQ---ADR----ARA-TGVG--LVSFEEAISTADFISLHM 254 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G------~~V~~~d-~~~~---~~~----a~~-~g~~--~~~l~ell~~aD~V~l~~ 254 (595)
.+|+|+| .|.+|+.+.+.|...+ .++..+. +... ... ... ..+. ..+. +.+..+|+|++|+
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~al 88 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLAL 88 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEECC
Confidence 5899999 9999999999998776 4766653 2211 110 000 1111 1233 3356899999999
Q ss_pred CCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHH
Q 046427 255 PLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294 (595)
Q Consensus 255 Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~ 294 (595)
|... + .+....++.|+.+|+.+.---.+..+.++
T Consensus 89 g~~~-s-----~~~~~~~~~G~~vIDlSa~~R~~~~~~~~ 122 (352)
T 2nqt_A 89 PHGH-S-----AVLAQQLSPETLIIDCGADFRLTDAAVWE 122 (352)
T ss_dssp TTSC-C-----HHHHHHSCTTSEEEECSSTTTCSCHHHHH
T ss_pred CCcc-h-----HHHHHHHhCCCEEEEECCCccCCcchhhh
Confidence 9543 2 33333346789999998654444434444
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.047 Score=57.11 Aligned_cols=87 Identities=24% Similarity=0.254 Sum_probs=60.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc------CHHHhcc--------ccCEEEEeC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV------SFEEAIS--------TADFISLHM 254 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~------~l~ell~--------~aD~V~l~~ 254 (595)
.|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|+..+ ++.+.+. ..|+|+-++
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~ 261 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA 261 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence 47899999999999999999999999 899998875 3456677776421 2333332 367777766
Q ss_pred CCChhccccccHHHHhcCCCceEEEecc
Q 046427 255 PLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 255 Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.. +++ -...+..++++..++.++
T Consensus 262 G~-~~~----~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 262 GV-AET----VKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp CC-HHH----HHHHHHHEEEEEEEEECS
T ss_pred CC-HHH----HHHHHHHhccCCEEEEEe
Confidence 52 211 133455677777777765
|
| >3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.019 Score=58.44 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=42.1
Q ss_pred CccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC
Q 046427 520 EGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD 570 (595)
Q Consensus 520 ~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d 570 (595)
....|.+..+|+||+++.|++.|.++|+||..++.......+.-.|.++++
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~ 55 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFN 55 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEE
Confidence 345677889999999999999999999999999987555566667776664
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.03 Score=60.61 Aligned_cols=68 Identities=15% Similarity=0.040 Sum_probs=48.5
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHH---HcCCccc--C-HHHhccccCEEEEeC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRAR---ATGVGLV--S-FEEAISTADFISLHM 254 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~---~~g~~~~--~-l~ell~~aD~V~l~~ 254 (595)
..++.||++.|||.|.+|...++.|...|.+|.++|+....+... +.++++. . -++.+..+|+|+.+.
T Consensus 7 ~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at 80 (457)
T 1pjq_A 7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT 80 (457)
T ss_dssp EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcC
Confidence 357899999999999999999999999999999999876443211 1233321 1 123456777776643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.091 Score=54.72 Aligned_cols=87 Identities=25% Similarity=0.260 Sum_probs=59.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCcc-c-------CHHHhcc-----ccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGL-V-------SFEEAIS-----TADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~-~-------~l~ell~-----~aD~V~l~~P 255 (595)
.|.+|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|... + ++.+.+. ..|+|+-++.
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g 269 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 269 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence 47899999999999999999999999 899998766 446667777632 1 1222222 3677777765
Q ss_pred CChhccccccHHHHhcCCCc-eEEEecc
Q 046427 256 LTPATSKMFNDEAFFKMKKG-VRIVNVA 282 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~g-ailiN~a 282 (595)
..+ + -...++.++++ ..++.++
T Consensus 270 ~~~-~----~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 270 NVK-V----MRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp CHH-H----HHHHHHTBCTTTCEEEECS
T ss_pred cHH-H----HHHHHHhhccCCcEEEEEe
Confidence 311 1 13445667777 7777665
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.12 Score=55.35 Aligned_cols=107 Identities=22% Similarity=0.235 Sum_probs=65.6
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE--------ECCCC-cHHHHHHc----CC------------ccc-CH
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA--------HDPYA-QADRARAT----GV------------GLV-SF 240 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a~~~----g~------------~~~-~l 240 (595)
|.++.|+++.|.|+|++|+.+|+.|..+|.+|++ |||.- ..+...+. +. +.+ +-
T Consensus 205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~ 284 (421)
T 1v9l_A 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP 284 (421)
T ss_dssp HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence 4579999999999999999999999999999984 33331 11111111 11 222 33
Q ss_pred HHhcc-ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 241 EEAIS-TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 241 ~ell~-~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
++++. .||+++-|. +.+.|+.+....++ -.+|+-.+-+++ ..++ .+.|.+..+
T Consensus 285 ~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi 338 (421)
T 1v9l_A 285 DAIFKLDVDIFVPAA-----IENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGV 338 (421)
T ss_dssp TGGGGCCCSEEEECS-----CSSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTC
T ss_pred hhhhcCCccEEEecC-----cCCccchhhHHHcC-ceEEEecCCCcC-CHHH-HHHHHHCCC
Confidence 45554 688887776 24445555555553 246666666665 3333 344444444
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.032 Score=55.34 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=48.1
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCccc--CHHHh-ccccCEEEEeCCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLV--SFEEA-ISTADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~--~l~el-l~~aD~V~l~~Plt 257 (595)
.++|.|.|.|.||+.+++.|...|++|++.++.... ......+++.+ ++.++ +.++|+|+.+....
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCcc
Confidence 378999999999999999999999999999987632 22333454332 22211 77889988877643
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.022 Score=55.33 Aligned_cols=67 Identities=10% Similarity=0.120 Sum_probs=47.0
Q ss_pred ecCCEEEEEe-CChHHHHHHHHHhcCC-CEEEEECCCCcHHH-HHHcCCc-----c---cCHHHhccccCEEEEeCCC
Q 046427 190 LVGKTLAVMG-FGKVGTEVARRAKGLG-MNVIAHDPYAQADR-ARATGVG-----L---VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 190 l~gktvGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~-a~~~g~~-----~---~~l~ell~~aD~V~l~~Pl 256 (595)
...|++.|.| .|.||+.+++.|...| ++|+++++...... ....++. . .+++++++.+|+|+.+...
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 4457899999 6999999999999999 89999988652211 0111221 1 1356778889999877764
|
| >3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.048 Score=55.38 Aligned_cols=52 Identities=10% Similarity=-0.000 Sum_probs=43.4
Q ss_pred CccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC
Q 046427 520 EGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE 571 (595)
Q Consensus 520 ~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~ 571 (595)
....|.+..+|+||+++.|++.|.++|+||..++-......+.-.|.++++-
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 58 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ 58 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec
Confidence 3467788899999999999999999999999999875556666777777764
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.05 Score=58.63 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=46.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEEE-ECCCCcH--HHHHHc-C----------------------Cc-ccCHHHhc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVIA-HDPYAQA--DRARAT-G----------------------VG-LVSFEEAI 244 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~--~~a~~~-g----------------------~~-~~~l~ell 244 (595)
-+|||||+|.||+.+++.+... ++++.+ +|++... ..+.+. | +. +.++++++
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL 103 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL 103 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence 3799999999999999988754 677665 6877632 222222 4 11 24799999
Q ss_pred c--ccCEEEEeCCC
Q 046427 245 S--TADFISLHMPL 256 (595)
Q Consensus 245 ~--~aD~V~l~~Pl 256 (595)
+ +.|+|+.++|.
T Consensus 104 ~d~dIDaVviaTp~ 117 (446)
T 3upl_A 104 SNPLIDVIIDATGI 117 (446)
T ss_dssp TCTTCCEEEECSCC
T ss_pred cCCCCCEEEEcCCC
Confidence 7 58999999984
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.028 Score=57.93 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=59.3
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc------CHHHhcc----ccCEEEEeCCCChh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV------SFEEAIS----TADFISLHMPLTPA 259 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell~----~aD~V~l~~Plt~~ 259 (595)
.|++|.|+|.|.+|...++.++.+|.+|++.++.. ..+.++++|...+ ++.+.+. ..|+|+.++...+
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~- 244 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPK- 244 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHH-
Confidence 47899999999999999999999999999998865 4456677776421 2222222 4677776664211
Q ss_pred ccccccHHHHhcCCCceEEEecc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a 282 (595)
+ -...+..++++..++.++
T Consensus 245 ~----~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 245 A----FSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp H----HHHHHHHEEEEEEEEECS
T ss_pred H----HHHHHHHhccCCEEEEeC
Confidence 1 133455567777777765
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.013 Score=59.29 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=36.5
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ 226 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~ 226 (595)
..++.||+|.|||.|.+|...++.|...|.+|.++++...
T Consensus 8 ~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~ 47 (274)
T 1kyq_A 8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH 47 (274)
T ss_dssp EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred EEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 4578999999999999999999999999999999998653
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.055 Score=58.43 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=31.5
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~ 220 (595)
|.++.|+||.|-|+|++|+..|+.|...|.+|++
T Consensus 247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVa 280 (470)
T 2bma_A 247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLT 280 (470)
T ss_dssp TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECE
T ss_pred cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence 4578999999999999999999999999999984
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.027 Score=53.12 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=31.8
Q ss_pred cCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+++.|+| .|.||+.+++.++..|.+|++.++..
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 73 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD 73 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999 69999999999999999999998764
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.047 Score=56.12 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=46.3
Q ss_pred CEEEEEeCChHHHHHHHHHhc--CCCEEE-EECCCCc---HHHHHHcCCcc--cCHHHhcc-----ccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKG--LGMNVI-AHDPYAQ---ADRARATGVGL--VSFEEAIS-----TADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~--~G~~V~-~~d~~~~---~~~a~~~g~~~--~~l~ell~-----~aD~V~l~~P 255 (595)
.+|||||+|.||+.+++.+.. -++++. ++|++.. ...+++.|+.. .+.+++++ +.|+|+.|+|
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp 80 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS 80 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC
Confidence 479999999999999999843 467654 4677653 34455677642 35677754 5899999999
|
| >4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.38 Score=50.27 Aligned_cols=131 Identities=20% Similarity=0.245 Sum_probs=84.2
Q ss_pred hhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCC--hHHHHHHHH
Q 046427 133 SAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFG--KVGTEVARR 210 (595)
Q Consensus 133 ~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~ 210 (595)
+.+...+|+|.|.-|....++ .+++=++.+.++ +.+..+.|.+|++||=+ ++..+.+..
T Consensus 141 ~la~~s~vPVING~g~~~HPt--QaL~Dl~Ti~e~-----------------~~~~~l~gl~ia~vGD~~~~va~S~~~~ 201 (358)
T 4h31_A 141 ELGAFAGVPVWNGLTDEFHPT--QILADFLTMLEH-----------------SQGKALADIQFAYLGDARNNVGNSLMVG 201 (358)
T ss_dssp HHHHHSSSCEEESCCSSCCHH--HHHHHHHHHHHT-----------------TTTCCGGGCEEEEESCTTSHHHHHHHHH
T ss_pred HhhhhccCceECCCCcCCCch--HHHHHHHHHHHH-----------------hcCCCcCceEEEecCCCCcccchHHHHH
Confidence 345567899999655443332 222223333221 12346889999999954 899999999
Q ss_pred HhcCCCEEEEECCCC---cHH-------HHHHcCCcc---cCHHHhccccCEEEEeCCCC----hh---------ccccc
Q 046427 211 AKGLGMNVIAHDPYA---QAD-------RARATGVGL---VSFEEAISTADFISLHMPLT----PA---------TSKMF 264 (595)
Q Consensus 211 l~~~G~~V~~~d~~~---~~~-------~a~~~g~~~---~~l~ell~~aD~V~l~~Plt----~~---------t~~li 264 (595)
+..||++|....|.. +.+ .+.+.|... .++++.+++||+|..-.=.. ++ ...-+
T Consensus 202 ~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~v 281 (358)
T 4h31_A 202 AAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVALMKPYQV 281 (358)
T ss_dssp HHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCB
T ss_pred HHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHHHHhCccc
Confidence 999999999988742 221 123445432 38999999999998532211 11 11346
Q ss_pred cHHHHhc-CCCceEEEecc
Q 046427 265 NDEAFFK-MKKGVRIVNVA 282 (595)
Q Consensus 265 ~~~~l~~-mk~gailiN~a 282 (595)
+.+.++. .||+++|.-|.
T Consensus 282 ~~~~l~~~ak~~~i~mH~L 300 (358)
T 4h31_A 282 NMNVLKQTGNPNVKFMHCL 300 (358)
T ss_dssp CHHHHHHTTCTTCEEEECS
T ss_pred CHHHHHhcCCCCcEEECCC
Confidence 7777775 47889998886
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.033 Score=53.22 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=47.0
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc--------cCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL--------VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------~~l~ell~~aD~V~l~~Pl 256 (595)
++|.|.| .|.||+.+++.|...|.+|++.++..........+++. .++.++++++|+|+.+...
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 6899999 59999999999999999999999875321111122221 1366788899999887754
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.078 Score=50.35 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=46.2
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcHHH-HHHcCCccc--CHH----HhccccCEEEEeCCC
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQADR-ARATGVGLV--SFE----EAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~g~~~~--~l~----ell~~aD~V~l~~Pl 256 (595)
++|.|.|. |.||+.+++.|...|++|++.++...... ....+++.+ |+. +.+..+|+|+.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 36889997 99999999999999999999998653211 112344322 322 567889999888765
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.046 Score=56.81 Aligned_cols=88 Identities=17% Similarity=0.247 Sum_probs=62.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHH-HcCCccc----C---HHHhccccCEEEEeCCCChhcc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRAR-ATGVGLV----S---FEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~-~~g~~~~----~---l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.|.+|.|+|.|.+|...++.++.+|.+|++.++... .+.+. ++|...+ + +.++....|+|+-++.... +
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~-~- 257 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHH-A- 257 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCC-C-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChH-H-
Confidence 578999999999999999999999999999998763 34455 6776421 2 2233345788888776321 1
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
-...+..++++..++.++-
T Consensus 258 ---~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 258 ---LEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp ---SHHHHTTEEEEEEEEECSC
T ss_pred ---HHHHHHHhccCCEEEEeCC
Confidence 1345566788888887763
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.073 Score=55.67 Aligned_cols=85 Identities=26% Similarity=0.380 Sum_probs=54.2
Q ss_pred EEEEEeCChHHHHHHHHHhcC-CCEEEEEC-CCCcHHH-HH--Hc----C-------------------Cccc---CHHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGL-GMNVIAHD-PYAQADR-AR--AT----G-------------------VGLV---SFEE 242 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~d-~~~~~~~-a~--~~----g-------------------~~~~---~l~e 242 (595)
+|||+|+|+||+.+.|.+... .++|.+.+ |....+. +. +. | +... +.++
T Consensus 19 kVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~ 98 (354)
T 3cps_A 19 TLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAE 98 (354)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGGG
T ss_pred EEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChHH
Confidence 899999999999999998866 68887764 3443321 11 00 0 0011 3444
Q ss_pred hc---cccCEEEEeCCCChhccccccHHHHhcCCCce--EEEeccC
Q 046427 243 AI---STADFISLHMPLTPATSKMFNDEAFFKMKKGV--RIVNVAR 283 (595)
Q Consensus 243 ll---~~aD~V~l~~Plt~~t~~li~~~~l~~mk~ga--iliN~ar 283 (595)
+- ..+|+|+.|+|.-. ++.. .-..++.|+ ++|+.+.
T Consensus 99 i~w~~~~vDvV~eatg~~~-s~e~----a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 99 IPWGASGAQIVCESTGVFT-TEEK----ASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp CCHHHHTCCEEEECSSSCC-SHHH----HGGGGTTTCSEEEESSCC
T ss_pred CCcccCCCCEEEECCCchh-hHHH----HHHHHHcCCcEEEEeCCC
Confidence 42 57999999999533 2222 223467788 9999865
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.03 Score=57.72 Aligned_cols=85 Identities=15% Similarity=0.286 Sum_probs=58.6
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-----C---HHHh-ccccCEEEEeCCCChhccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-----S---FEEA-ISTADFISLHMPLTPATSK 262 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-----~---l~el-l~~aD~V~l~~Plt~~t~~ 262 (595)
.+++.|+|+|++|+.+|+.|...|. |++.|+++..-...+.++... + |+++ +++||.++++++..+ .+
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~--~n 191 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS--ET 191 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHH--HH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccH--HH
Confidence 5689999999999999999999999 999998764322445565322 2 4445 788999999987432 33
Q ss_pred cccHHHHhcCCCceEEE
Q 046427 263 MFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 263 li~~~~l~~mk~gaili 279 (595)
+.-....+.+.+...++
T Consensus 192 ~~~~~~ar~~~~~~~ii 208 (336)
T 1lnq_A 192 IHCILGIRKIDESVRII 208 (336)
T ss_dssp HHHHHHHHTTCTTSEEE
T ss_pred HHHHHHHHHHCCCCeEE
Confidence 34344555666664443
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.025 Score=54.12 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=44.9
Q ss_pred CEEEEEe-CChHHHHHHHHHh-cCCCEEEEECCCCc-HHHH---HHcCCcc--------cCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMG-FGKVGTEVARRAK-GLGMNVIAHDPYAQ-ADRA---RATGVGL--------VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~-~~G~~V~~~d~~~~-~~~a---~~~g~~~--------~~l~ell~~aD~V~l~~Pl 256 (595)
|++.|.| .|.||+.+++.|. ..|++|++.+++.. .... ...++.. .+++++++.+|+|+.+...
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~ 83 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME 83 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence 6799999 5999999999999 89999999988643 2111 1112211 1355677788888877763
|
| >2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.13 Score=54.49 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=65.3
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHh-
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFF- 270 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~- 270 (595)
-.++-|+|.|.+|+++|+.++.+|++|+++|++.... + .+-+..+|-++...|. ..+.. +.
T Consensus 204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~----------~-~~~fp~a~~~~~~~p~-----~~~~~--~~~ 265 (386)
T 2we8_A 204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA----------T-TARFPTADEVVVDWPH-----RYLAA--QAE 265 (386)
T ss_dssp CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS----------C-TTTCSSSSEEEESCHH-----HHHHH--HHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc----------c-cccCCCceEEEeCChH-----HHHHh--hcc
Confidence 3489999999999999999999999999999865211 1 1234566655555441 11111 11
Q ss_pred --cCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 271 --KMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 271 --~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
.+.++..+|=+.++.-.|...|..+|+.+
T Consensus 266 ~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~ 296 (386)
T 2we8_A 266 AGAIDARTVVCVLTHDPKFDVPLLEVALRLP 296 (386)
T ss_dssp HTCCCTTCEEEECCCCHHHHHHHHHHHTTSS
T ss_pred ccCCCCCcEEEEEECChHhHHHHHHHHhcCC
Confidence 15678888888899888999999999887
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.055 Score=55.51 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=57.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHH--HHHHc--------CCcc-cCHHHhccccCEEEEeCCCChh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQAD--RARAT--------GVGL-VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~--~a~~~--------g~~~-~~l~ell~~aD~V~l~~Plt~~ 259 (595)
++|+|||.|.+|.+++..+...+ -++..||...... .+.++ .+.. .+-.+.+++||+|+++.+...
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~- 79 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQ- 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCC-
Confidence 47999999999999999988655 5899999864211 11111 1111 133677999999999987432
Q ss_pred cccc-------ccH-------HHHhcCCCceEEEecc
Q 046427 260 TSKM-------FND-------EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 t~~l-------i~~-------~~l~~mk~gailiN~a 282 (595)
..++ .|. +.+....|++++++++
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 80 RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 2221 011 1223347889999973
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.061 Score=55.78 Aligned_cols=88 Identities=22% Similarity=0.303 Sum_probs=60.5
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc---C---HH----Hhc----cccCEEEEeC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV---S---FE----EAI----STADFISLHM 254 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~---~---l~----ell----~~aD~V~l~~ 254 (595)
.|.+|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|...+ + -+ ++. ...|+|+-++
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~ 250 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 250 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence 47899999999999999999999999 999998765 3456677776321 1 11 111 2478887777
Q ss_pred CCChhccccccHHHHhcCCCceEEEeccC
Q 046427 255 PLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 255 Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
.... + -...++.++++..++.++-
T Consensus 251 g~~~-~----~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 251 GAEA-S----IQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CCHH-H----HHHHHHHSCTTCEEEECSC
T ss_pred CChH-H----HHHHHHHhcCCCEEEEEec
Confidence 6321 1 1334566777777777763
|
| >3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.054 Score=55.45 Aligned_cols=55 Identities=16% Similarity=0.047 Sum_probs=44.4
Q ss_pred eecCc-cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC
Q 046427 517 VSLEG-SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE 571 (595)
Q Consensus 517 ~~~~~-~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~ 571 (595)
|.|.. ..|.+..+|+||+|+.|++.|.++|+||..++-......+.-.|.++++-
T Consensus 17 ~~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~ 72 (302)
T 3o1l_A 17 FQGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRA 72 (302)
T ss_dssp TCCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEG
T ss_pred ecccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEec
Confidence 33433 46677889999999999999999999999999876555677788887764
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.47 E-value=0.043 Score=55.45 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=57.5
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-C------HHHhccccCEEEEeCCCChhcc
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-S------FEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-~------l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.|+++.|+|. |.+|...++.++.+|++|++.+++. ..+.++++|...+ + +.+.+...|+|+- +.. + +
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~-~- 200 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K-E- 200 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T-T-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H-H-
Confidence 4789999998 9999999999999999999998865 3455666675421 1 1122245677776 653 1 1
Q ss_pred ccccHHHHhcCCCceEEEecc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~a 282 (595)
-...++.|+++..++.++
T Consensus 201 ---~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 201 ---VEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp ---HHHHHTTEEEEEEEEEC-
T ss_pred ---HHHHHHhhccCCEEEEEe
Confidence 234556677777776664
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.088 Score=55.05 Aligned_cols=87 Identities=28% Similarity=0.315 Sum_probs=57.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc--------CHHHhcc-----ccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV--------SFEEAIS-----TADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~--------~l~ell~-----~aD~V~l~~P 255 (595)
.|.+|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+..+ ++.+.+. ..|+|+-++.
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g 272 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG 272 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence 57899999999999999999999998 899999766 4566777776421 1222221 3677766665
Q ss_pred CChhccccccHHHHhcCCCc-eEEEecc
Q 046427 256 LTPATSKMFNDEAFFKMKKG-VRIVNVA 282 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~g-ailiN~a 282 (595)
. +++ -...+..++++ ..++.++
T Consensus 273 ~-~~~----~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 273 N-VSV----MRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp C-HHH----HHHHHHTBCTTTCEEEECS
T ss_pred C-HHH----HHHHHHHhhccCCEEEEEc
Confidence 2 111 13345556664 6666654
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.046 Score=56.83 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=43.7
Q ss_pred EEEEEeCChHHHHHHHHHhc-CCCEEEEE-CCCCcH--HHHHHc------------------CCcc-cCHHHhccccCEE
Q 046427 194 TLAVMGFGKVGTEVARRAKG-LGMNVIAH-DPYAQA--DRARAT------------------GVGL-VSFEEAISTADFI 250 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~--~~a~~~------------------g~~~-~~l~ell~~aD~V 250 (595)
+|||+|+|.||+.+++.+.. -++++.+. |+.... ..+... ++.. .+.++++.++|+|
T Consensus 3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV 82 (337)
T 1cf2_P 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV 82 (337)
T ss_dssp EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEE
Confidence 79999999999999999886 56887664 443211 112211 1111 1467778899999
Q ss_pred EEeCCCC
Q 046427 251 SLHMPLT 257 (595)
Q Consensus 251 ~l~~Plt 257 (595)
+.|+|..
T Consensus 83 ~~atp~~ 89 (337)
T 1cf2_P 83 IDCTPEG 89 (337)
T ss_dssp EECCSTT
T ss_pred EECCCch
Confidence 9999953
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.057 Score=56.22 Aligned_cols=45 Identities=33% Similarity=0.360 Sum_probs=38.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|++|.|+|.|.||...++.++.+|.+|++.++.. ..+.++++|.
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 234 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA 234 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC
Confidence 47899999999999999999999999999998765 3455666665
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.078 Score=57.11 Aligned_cols=86 Identities=26% Similarity=0.361 Sum_probs=62.9
Q ss_pred eecCCEEEEEeCCh----------HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC--Cccc-CHHHhccccCEEEEeCC
Q 046427 189 SLVGKTLAVMGFGK----------VGTEVARRAKGLGMNVIAHDPYAQADRARATG--VGLV-SFEEAISTADFISLHMP 255 (595)
Q Consensus 189 ~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g--~~~~-~l~ell~~aD~V~l~~P 255 (595)
.+.|++|+|+|+.- =...+++.|+..|.+|.+|||....+.....+ +.++ ++++++++||.|+++++
T Consensus 330 ~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t~ 409 (444)
T 3vtf_A 330 GLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIATA 409 (444)
T ss_dssp CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECSC
T ss_pred ccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEccC
Confidence 58999999999862 36779999999999999999987433323333 4444 78999999999999987
Q ss_pred CChhccccccHHHHhcCCCceEEEeccCC
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
.++-+.+ + + ++.+++|+ |+
T Consensus 410 -h~ef~~l-d------~-~~~vv~D~-Rn 428 (444)
T 3vtf_A 410 -WPQYEGL-D------Y-RGKVVVDG-RY 428 (444)
T ss_dssp -CGGGGGS-C------C-TTCEEEES-SC
T ss_pred -CHHHhCC-C------c-CCCEEEEC-CC
Confidence 3433322 1 2 35788885 53
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.1 Score=53.87 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=58.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-------C-HHHh---c-----cccCEEEEe
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-------S-FEEA---I-----STADFISLH 253 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-------~-l~el---l-----~~aD~V~l~ 253 (595)
.|++|.|+|.|.+|...++.++.+|.+|++.++.. ..+.++++|...+ + .+++ . ...|+|+-+
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~ 247 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 247 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence 47899999999999999999999999999998765 3455666775311 1 1122 2 246777776
Q ss_pred CCCChhccccccHHHHhcCCCceEEEeccC
Q 046427 254 MPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 254 ~Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
+.... + -...+..++++..++.++.
T Consensus 248 ~g~~~-~----~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 248 SGNEK-C----ITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp SCCHH-H----HHHHHHHSCTTCEEEECSC
T ss_pred CCCHH-H----HHHHHHHHhcCCEEEEEec
Confidence 65311 1 1234555677777776653
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=94.35 E-value=0.063 Score=55.80 Aligned_cols=85 Identities=20% Similarity=0.344 Sum_probs=52.3
Q ss_pred EEEEEeCChHHHHHHHHHhcC-CCEEEEE-CCCCcHHHH-H------HcC-----C----------------ccc---CH
Q 046427 194 TLAVMGFGKVGTEVARRAKGL-GMNVIAH-DPYAQADRA-R------ATG-----V----------------GLV---SF 240 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~a-~------~~g-----~----------------~~~---~l 240 (595)
+|||+|+|+||+.+++.+... +++|.+. |+....+.. . ..| . ... ++
T Consensus 5 kVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~dp 84 (337)
T 3e5r_O 5 KIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNP 84 (337)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCSCG
T ss_pred EEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecCCh
Confidence 799999999999999998865 6787765 442222110 1 001 0 001 45
Q ss_pred HHh-c--cccCEEEEeCCCChhccccccHHHHhcCCCce--EEEeccC
Q 046427 241 EEA-I--STADFISLHMPLTPATSKMFNDEAFFKMKKGV--RIVNVAR 283 (595)
Q Consensus 241 ~el-l--~~aD~V~l~~Plt~~t~~li~~~~l~~mk~ga--iliN~ar 283 (595)
+++ + ..+|+|+.|+|... ++... -..++.|+ ++|+.+.
T Consensus 85 ~~l~w~~~~vDvV~eaTg~~~-~~e~a----~~~l~aGak~VVIs~pa 127 (337)
T 3e5r_O 85 DEIPWAEAGAEYVVESTGVFT-DKEKA----AAHLKGGAKKVVISAPS 127 (337)
T ss_dssp GGCCHHHHTCSEEEECSSSCC-SHHHH----THHHHTTCSEEEESSCC
T ss_pred HHccccccCCCEEEECCCchh-hHHHH----HHHHHcCCCEEEEecCC
Confidence 554 2 47899999998533 33222 22355677 8888764
|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.031 Score=53.33 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=38.7
Q ss_pred CccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeec----CCCcEEEEEEcC
Q 046427 520 EGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIA----PQKQAVMTIGVD 570 (595)
Q Consensus 520 ~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~----~g~~al~vi~~d 570 (595)
..+.|.+..+|+||+++.|+++|+++|+||..++..... ..+.-.|.+.++
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~ 146 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVA 146 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEE
Confidence 346677788999999999999999999999999886433 233445555554
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=94.33 E-value=0.062 Score=55.73 Aligned_cols=93 Identities=11% Similarity=0.198 Sum_probs=60.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHH--HH--HcC--C----cc---cCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADR--AR--ATG--V----GL---VSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~--~~g--~----~~---~~l~ell~~aD~V~l~ 253 (595)
....++|+|||.|.||..+|..+...|. ++..||....... +. +.. + .. .+.+ .+++||+|+++
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~ 94 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT 94 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence 3567899999999999999999886676 8999998642111 11 111 1 11 1444 59999999998
Q ss_pred CCCCh---hcc-ccccH---------HHHhcCCCceEEEecc
Q 046427 254 MPLTP---ATS-KMFND---------EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 254 ~Plt~---~t~-~li~~---------~~l~~mk~gailiN~a 282 (595)
..... +|+ +++.. +.+....|++++++++
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt 136 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS 136 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 75321 222 22211 1334457899999997
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.051 Score=58.05 Aligned_cols=64 Identities=23% Similarity=0.276 Sum_probs=47.0
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCC---ccc---CHHHhccccCEEEE
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGV---GLV---SFEEAISTADFISL 252 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~---~~~---~l~ell~~aD~V~l 252 (595)
-+.||+|+|+|-|.+|+.+++.++.+|++|+++|++.. ......... .+. .+.++++++|+|+.
T Consensus 32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~ 102 (419)
T 4e4t_A 32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST 102 (419)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999999999999998753 211111111 112 25667788999983
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.018 Score=59.80 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=60.1
Q ss_pred EEEEEeCChHHHHHHHHHhcC---------CCEEEE-ECCCCcHHHHHHcCC--cccCHHHhccccCEEEEeCCCChhcc
Q 046427 194 TLAVMGFGKVGTEVARRAKGL---------GMNVIA-HDPYAQADRARATGV--GLVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~---------G~~V~~-~d~~~~~~~a~~~g~--~~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
+|||||+|.||+.+++.++.. +++|.+ +|++.... +..+. ...++++++ +.|+|+.|+|......
T Consensus 5 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~--~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a~ 81 (332)
T 2ejw_A 5 KIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP--RAIPQELLRAEPFDLL-EADLVVEAMGGVEAPL 81 (332)
T ss_dssp EEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC--CSSCGGGEESSCCCCT-TCSEEEECCCCSHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh--hccCcccccCCHHHHh-CCCEEEECCCCcHHHH
Confidence 799999999999999988754 467655 57654211 11111 123788888 9999999998542112
Q ss_pred ccccHHHHhcCCCceEEEeccCCchh-cHHHHHHHHhcC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVV-DEEALVRALDSG 299 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~v-d~~aL~~aL~~g 299 (595)
..+ .+.|+.|.-++......+. ..+.|.++.++.
T Consensus 82 ~~~----~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~ 116 (332)
T 2ejw_A 82 RLV----LPALEAGIPLITANKALLAEAWESLRPFAEEG 116 (332)
T ss_dssp HHH----HHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred HHH----HHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence 122 2234555555554333332 355677766665
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.064 Score=54.94 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=44.8
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHH--HH---H----c--CC--cc-cCHHHhccccCEEEEeCCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADR--AR---A----T--GV--GL-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~--a~---~----~--g~--~~-~~l~ell~~aD~V~l~~Plt 257 (595)
+|+|||.|.+|..+|..+...|+ +|..+|....... +. + . .. .. .+. +.+++||+|+++.+..
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~ 78 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIG 78 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 58999999999999998876566 7999998753211 11 1 1 22 22 354 6799999999997743
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.068 Score=55.51 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=53.7
Q ss_pred CEEEEEeCChHHHHHHHHHhc-CCCEEEEE-CCCCcHHHH---HHc----C-------------------Cc---ccCHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKG-LGMNVIAH-DPYAQADRA---RAT----G-------------------VG---LVSFE 241 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~~~a---~~~----g-------------------~~---~~~l~ 241 (595)
.+|||+|+|+||+.+++.+.. -+++|.+. |+....+.. .+. | +. ..+.+
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~ 83 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS 83 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence 389999999999999999874 46888765 432222211 010 0 00 01455
Q ss_pred Hh-c--cccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCC
Q 046427 242 EA-I--STADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 242 el-l--~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
++ + .++|+|+.|+|... ++.. .-..++.|+..|.++-.
T Consensus 84 ~l~~~~~~vDvV~eatg~~~-~~e~----a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 84 KIKWGDAGAEYVVESTGVFT-TMEK----AGAHLQGGAKRVIISAP 124 (335)
T ss_dssp GCCTTTTTCCEEEECSSSCC-SHHH----HGGGGGGTCSEEEESSC
T ss_pred HCccccCCCCEEEECCCchh-hHHH----HHHHHhCCCeEEEeccC
Confidence 55 2 57999999999533 2222 22346778777777654
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.085 Score=58.79 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=51.6
Q ss_pred CCceEEeCCCC-CchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccce-eeecCCEEEEEeCChHHHHHHHHHhcCC
Q 046427 138 HGCLVVNAPTA-NTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVG-VSLVGKTLAVMGFGKVGTEVARRAKGLG 215 (595)
Q Consensus 138 ~gI~V~n~p~~-~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~l~~~G 215 (595)
.+-+.++-... +....||...-+-|-+.| |.-....| ..|++++|.|||+|.+|..+|+.|...|
T Consensus 283 l~~~~~~l~~~~dp~~la~~~~~Lnlklm~-------------wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aG 349 (615)
T 4gsl_A 283 LAPRVVDLSSLLDPLKIADQSVDLNLKLMK-------------WRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWG 349 (615)
T ss_dssp SCCEEEECHHHHCHHHHHHHHHHHHHHHHH-------------HHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred cceeEEeccccCCHHHHHhhhhhhhhHHHH-------------HhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcC
Confidence 34555555443 666777777766655544 32211122 2589999999999999999999999888
Q ss_pred C-EEEEECCC
Q 046427 216 M-NVIAHDPY 224 (595)
Q Consensus 216 ~-~V~~~d~~ 224 (595)
. ++..+|..
T Consensus 350 VG~ItLvD~D 359 (615)
T 4gsl_A 350 VRKITFVDNG 359 (615)
T ss_dssp CCEEEEECCC
T ss_pred CCEEEEEcCC
Confidence 6 78888864
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.19 Score=53.52 Aligned_cols=64 Identities=30% Similarity=0.371 Sum_probs=49.7
Q ss_pred ecCCEEEEEe-----CCh---HHHHHHHHHhcCCCEEEEECCCC---cHHH-------HHHcCC--c-ccCHHHhccccC
Q 046427 190 LVGKTLAVMG-----FGK---VGTEVARRAKGLGMNVIAHDPYA---QADR-------ARATGV--G-LVSFEEAISTAD 248 (595)
Q Consensus 190 l~gktvGIIG-----lG~---IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~g~--~-~~~l~ell~~aD 248 (595)
|.|++|+||| +|. +.++++..+..||++|....|.. .++. +.+.|. . ..++++++++||
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD 265 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD 265 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence 8899999997 354 99999999999999999988752 2221 223564 3 348999999999
Q ss_pred EEEEe
Q 046427 249 FISLH 253 (595)
Q Consensus 249 ~V~l~ 253 (595)
+|..-
T Consensus 266 VVytd 270 (418)
T 2yfk_A 266 VVYPK 270 (418)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99984
|
| >3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.12 Score=55.48 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=31.9
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEE-EEC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVI-AHD 222 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~-~~d 222 (595)
|.++.|+||.|-|+|++|+..|+.|...|.+|+ +.|
T Consensus 234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD 270 (456)
T 3r3j_A 234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSD 270 (456)
T ss_dssp TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEEC
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 457999999999999999999999999999987 344
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.081 Score=56.95 Aligned_cols=34 Identities=38% Similarity=0.634 Sum_probs=31.7
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~ 220 (595)
|.++.|+++.|.|+|++|+.+|+.|...|.+|++
T Consensus 225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVa 258 (449)
T 1bgv_A 225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 258 (449)
T ss_dssp TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 4578999999999999999999999999999986
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.056 Score=56.35 Aligned_cols=87 Identities=22% Similarity=0.164 Sum_probs=55.0
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc------CHHHhcc-----ccCEEEEeCCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV------SFEEAIS-----TADFISLHMPLT 257 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~------~l~ell~-----~aD~V~l~~Plt 257 (595)
.|++|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|...+ ++.+.+. ..|+|+-++..
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~- 268 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS- 268 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCC-
Confidence 47899999999999999999999998 799998765 3455666665321 2222111 25666665542
Q ss_pred hhccccccHHHHhcCCCceEEEecc
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+++ -...+..++++..++.++
T Consensus 269 ~~~----~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 269 PEI----LKQGVDALGILGKIAVVG 289 (371)
T ss_dssp HHH----HHHHHHTEEEEEEEEECC
T ss_pred HHH----HHHHHHHHhcCCEEEEeC
Confidence 111 123445566666666554
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.059 Score=55.64 Aligned_cols=86 Identities=27% Similarity=0.402 Sum_probs=56.2
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-----CHHH----hcc--ccCEEEEeCCCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-----SFEE----AIS--TADFISLHMPLT 257 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-----~l~e----ll~--~aD~V~l~~Plt 257 (595)
.|++|.|+|. |.||...++.++.+|.+|++.++.. ..+.++++|...+ ++.+ +.. ..|+|+-|+..
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~- 237 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGG- 237 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCch-
Confidence 5889999998 9999999999999999999998865 4455666665321 1211 111 36666666552
Q ss_pred hhccccccHHHHhcCCCceEEEecc
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+ .-...+..|+++..++.++
T Consensus 238 ~-----~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 238 P-----AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp ------CHHHHHHTEEEEEEEEEC-
T ss_pred h-----HHHHHHHhhcCCCEEEEEE
Confidence 1 1233455566666666664
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.23 Score=53.02 Aligned_cols=107 Identities=29% Similarity=0.372 Sum_probs=69.7
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE--------ECCCC-cHHH----HHHcC-Cc--ccCHHHhc-cccCE
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA--------HDPYA-QADR----ARATG-VG--LVSFEEAI-STADF 249 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~----a~~~g-~~--~~~l~ell-~~aD~ 249 (595)
|.++.||++.|.|+|++|+.+|+.|...|.+|++ ||+.- ..+. ..+.+ +. ..+-++++ -.||+
T Consensus 213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DV 292 (419)
T 3aoe_E 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV 292 (419)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSE
T ss_pred CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceE
Confidence 4478999999999999999999999999999993 34332 2221 11222 11 12223444 37999
Q ss_pred EEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 250 ISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 250 V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
++-|.. .+.|+.+....++ -.+|+..+-+.+ ..++ .+.|.+..|
T Consensus 293 liP~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~-t~~A-~~~L~~~Gi 336 (419)
T 3aoe_E 293 LVLAAR-----EGALDGDRARQVQ-AQAVVEVANFGL-NPEA-EAYLLGKGA 336 (419)
T ss_dssp EEECSC-----TTCBCHHHHTTCC-CSEEEECSTTCB-CHHH-HHHHHHHTC
T ss_pred EEeccc-----ccccccchHhhCC-ceEEEECCCCcC-CHHH-HHHHHHCCC
Confidence 998863 4566777777674 348888888776 3443 344444444
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.062 Score=55.50 Aligned_cols=88 Identities=19% Similarity=0.151 Sum_probs=58.0
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc-------cCHHHhcc-----ccCEEEEeCCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL-------VSFEEAIS-----TADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-------~~l~ell~-----~aD~V~l~~Pl 256 (595)
.|+++.|+|. |.||..+++.++..|.+|++.+++.. .+.+++.|... .++.+.+. ..|+|+-++..
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~ 248 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS 248 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence 4789999999 89999999999999999999987653 34455566421 12333332 36777766652
Q ss_pred ChhccccccHHHHhcCCCceEEEeccC
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
.+. -...+..|+++..+++++.
T Consensus 249 ~~~-----~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 249 EAA-----IEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HHH-----HHHHTTSEEEEEEEEECCC
T ss_pred HHH-----HHHHHHHHhcCCEEEEEeC
Confidence 111 1334555677777777653
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.041 Score=56.17 Aligned_cols=87 Identities=18% Similarity=0.102 Sum_probs=67.2
Q ss_pred cCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc------C-HHHhccccCEEEEeCCCChhccc
Q 046427 191 VGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV------S-FEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 191 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~------~-l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.|.+|.|+| .|.+|...++.++.+|.+|++.+.....+.++++|+..+ + +.+.+...|+|+-|+.. +.
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~-~~--- 227 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-DV--- 227 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCH-HH---
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCc-HH---
Confidence 478999997 999999999999999999998875444566777887521 3 66667789999988862 21
Q ss_pred cccHHHHhcCCCceEEEeccC
Q 046427 263 MFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~ar 283 (595)
. ...++.++++..++.++.
T Consensus 228 -~-~~~~~~l~~~G~iv~~g~ 246 (321)
T 3tqh_A 228 -G-IQSIDCLKETGCIVSVPT 246 (321)
T ss_dssp -H-HHHGGGEEEEEEEEECCS
T ss_pred -H-HHHHHhccCCCEEEEeCC
Confidence 2 556788999999999864
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.036 Score=57.77 Aligned_cols=66 Identities=24% Similarity=0.393 Sum_probs=47.9
Q ss_pred ecCCEEEEEeC-ChHHHHHHHHHhcCC--CEEEEECCCCcHHHH-----HHc-----CCcc-cCHHHhccccCEEEEeCC
Q 046427 190 LVGKTLAVMGF-GKVGTEVARRAKGLG--MNVIAHDPYAQADRA-----RAT-----GVGL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 190 l~gktvGIIGl-G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a-----~~~-----g~~~-~~l~ell~~aD~V~l~~P 255 (595)
+.+++|+|||. |.+|+.+|..+..+| .+|..||........ .+. .+.. .+..+.+++||+|+++.-
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 45689999998 999999998888777 489999986421111 111 1121 367888999999999864
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.045 Score=55.18 Aligned_cols=87 Identities=18% Similarity=0.275 Sum_probs=55.1
Q ss_pred CEEEEEe-CChHHHHHHHHHh-cCCCEEEE-ECCCCcHHH----HH----HcCCcc-cCHHHhccccCEEEEeCCCChhc
Q 046427 193 KTLAVMG-FGKVGTEVARRAK-GLGMNVIA-HDPYAQADR----AR----ATGVGL-VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~-~~G~~V~~-~d~~~~~~~----a~----~~g~~~-~~l~ell~~aD~V~l~~Plt~~t 260 (595)
.+|+|+| +|+||+.+++.+. .-++++.+ +|+..+... .. ..|+.. .++++++.++|+|+-++| ...+
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~-p~a~ 86 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL-PEGT 86 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC-HHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC-HHHH
Confidence 4899999 8999999999887 45788777 687532110 00 114432 479999999999999885 2223
Q ss_pred cccccHHHHhcCCCceEEEeccCC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg 284 (595)
...+. ..++.|.-+|-...|
T Consensus 87 ~~~~~----~al~~G~~vVigTTG 106 (272)
T 4f3y_A 87 LVHLD----AALRHDVKLVIGTTG 106 (272)
T ss_dssp HHHHH----HHHHHTCEEEECCCC
T ss_pred HHHHH----HHHHcCCCEEEECCC
Confidence 32221 123445555544445
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.049 Score=56.56 Aligned_cols=35 Identities=34% Similarity=0.692 Sum_probs=30.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEE-ECCCCcH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIA-HDPYAQA 227 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~~~ 227 (595)
-+|||.|+|+||+.++|++..+|++|++ +||+.+.
T Consensus 8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp~~d~ 43 (346)
T 3h9e_O 8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDPFIDP 43 (346)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECTTCCH
T ss_pred eEEEEECCChHHHHHHHHHHhCCCEEEEEeCCCCCh
Confidence 3899999999999999999999999888 6876544
|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.05 Score=51.56 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=38.3
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE 571 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~ 571 (595)
..|.+..+|+||++++|+++|+++|+||...+.... .+.-.+.+.++.
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~ 54 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISG 54 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEec
Confidence 467778899999999999999999999999998763 234555555543
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.073 Score=54.88 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=38.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcC--CCEEEEECCCC-cHHHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGL--GMNVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~-~~~~a~~~g~~ 236 (595)
.|++|.|+|.|.+|...++.++.+ |.+|++.++.. ..+.++++|..
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 218 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD 218 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC
Confidence 688999999999999999999998 99999999765 34556666753
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.087 Score=57.24 Aligned_cols=113 Identities=15% Similarity=0.105 Sum_probs=68.8
Q ss_pred CCEEEEEeCChH-HHHHHHHHhc----C-CCEEEEECCCCcH-HH----HH----HcCC----cc-cCHHHhccccCEEE
Q 046427 192 GKTLAVMGFGKV-GTEVARRAKG----L-GMNVIAHDPYAQA-DR----AR----ATGV----GL-VSFEEAISTADFIS 251 (595)
Q Consensus 192 gktvGIIGlG~I-G~~vA~~l~~----~-G~~V~~~d~~~~~-~~----a~----~~g~----~~-~~l~ell~~aD~V~ 251 (595)
.++|+|||.|.. |.++|..+.. + +.+|..||..... +. .. ..+. .. .++++.+++||+|+
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV 107 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 107 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence 458999999998 6556655543 3 6689999987532 10 01 1121 12 27889999999999
Q ss_pred EeCCCCh---hcc--------c--------------------ccc--HHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 252 LHMPLTP---ATS--------K--------------------MFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 252 l~~Plt~---~t~--------~--------------------li~--~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+++|... .++ + ++. .+.+....|+++++|.+---=+-..++.+....
T Consensus 108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~ 187 (472)
T 1u8x_X 108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN 187 (472)
T ss_dssp ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence 9999622 011 0 010 123444578999999875332335555555545
Q ss_pred CCeeEE
Q 046427 299 GIISQA 304 (595)
Q Consensus 299 g~i~ga 304 (595)
.++.|.
T Consensus 188 ~rViG~ 193 (472)
T 1u8x_X 188 SKILNI 193 (472)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 567665
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.95 E-value=0.052 Score=56.19 Aligned_cols=87 Identities=28% Similarity=0.277 Sum_probs=57.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc------CHHH----hcc--ccCEEEEeCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV------SFEE----AIS--TADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~------~l~e----ll~--~aD~V~l~~Pl 256 (595)
.|.+|.|+|.|.||...++.++..|. +|++.|+.. ..+.++++|...+ ++.+ +.. ..|+|+-++..
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~ 245 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD 245 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 47899999999999999999999999 899999876 3466777776421 2221 111 36677666553
Q ss_pred ChhccccccHHHHhcCCCceEEEecc
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.+ + -...+..++++..++.++
T Consensus 246 ~~-~----~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 246 VH-T----FAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp TT-H----HHHHHHHEEEEEEEEECC
T ss_pred hH-H----HHHHHHHHhcCCEEEEec
Confidence 21 1 133455566666666664
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=93.85 E-value=0.099 Score=53.34 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=63.2
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCC--EEEEECC--CCcHHH--HHHc--------CCcc-cCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGM--NVIAHDP--YAQADR--ARAT--------GVGL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~--~~~~~~--a~~~--------g~~~-~~l~ell~~aD~V~l~~Pl 256 (595)
.+|+|+| .|.+|+.++..+...|. ++..+|. ...... +.++ .+.. .+-.+.++.||+|+++...
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~ 80 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence 3799999 99999999999876664 7888998 432110 1110 0111 0225679999999999864
Q ss_pred Chhcccc-----c--c----H---HHHhcCCCceEEEeccCCchhc--HHHHHHH--HhcCCeeEE
Q 046427 257 TPATSKM-----F--N----D---EAFFKMKKGVRIVNVARGGVVD--EEALVRA--LDSGIISQA 304 (595)
Q Consensus 257 t~~t~~l-----i--~----~---~~l~~mk~gailiN~arg~~vd--~~aL~~a--L~~g~i~ga 304 (595)
.. ..++ + | + +.+....+.+++++++ ..+| ...+.+. +...++.|.
T Consensus 81 ~~-~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S--NPv~~~~~~~~~~~~~p~~rviG~ 143 (303)
T 1o6z_A 81 PR-QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS--NPVDLLNRHLYEAGDRSREQVIGF 143 (303)
T ss_dssp CC-CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC--SSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC--ChHHHHHHHHHHHcCCCHHHeeec
Confidence 32 1111 0 1 1 1233346788888863 3334 3333333 444466554
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.17 Score=52.79 Aligned_cols=90 Identities=27% Similarity=0.290 Sum_probs=65.1
Q ss_pred cCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc------CHHHhc---cccCEEEEeCCCChhc
Q 046427 191 VGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV------SFEEAI---STADFISLHMPLTPAT 260 (595)
Q Consensus 191 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~------~l~ell---~~aD~V~l~~Plt~~t 260 (595)
.|++|.|+| .|.||...++.++.+|.+|++.+.....+.++++|...+ ++.+.+ ...|+|+-++.....+
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~ 262 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTET 262 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhhh
Confidence 578999999 799999999999999999998874335566777886421 233222 3589999988743111
Q ss_pred cccccHHHHhcCCCceEEEeccCC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg 284 (595)
-...+..++++..++.++..
T Consensus 263 ----~~~~~~~l~~~G~iv~~g~~ 282 (375)
T 2vn8_A 263 ----WAPDFLKKWSGATYVTLVTP 282 (375)
T ss_dssp ----HGGGGBCSSSCCEEEESCCS
T ss_pred ----hHHHHHhhcCCcEEEEeCCC
Confidence 12345678999999999754
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.059 Score=55.91 Aligned_cols=86 Identities=17% Similarity=0.252 Sum_probs=56.3
Q ss_pred cCCEEEEE-eCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc------CHHHhcc-----ccCEEEEeCCCC
Q 046427 191 VGKTLAVM-GFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV------SFEEAIS-----TADFISLHMPLT 257 (595)
Q Consensus 191 ~gktvGII-GlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell~-----~aD~V~l~~Plt 257 (595)
.|++|.|+ |.|.||..+++.++..|.+|++.+++. ..+.+++.|...+ ++.+.+. ..|+++-|+..
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~- 245 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA- 245 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG-
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH-
Confidence 57899999 689999999999999999999999765 3455566665321 2222221 36666666542
Q ss_pred hhccccccHHHHhcCCCceEEEecc
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+ .-...+..|+++..++.++
T Consensus 246 ~-----~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 246 A-----YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp G-----GHHHHHHTEEEEEEEEECC
T ss_pred H-----HHHHHHHHhccCCEEEEEE
Confidence 1 1133455566666666665
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=93.79 E-value=0.12 Score=57.62 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=62.3
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-------------------cH-HH----HHHc--CCcc---
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-------------------QA-DR----ARAT--GVGL--- 237 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------------~~-~~----a~~~--g~~~--- 237 (595)
..|.+++|.|||+|-+|..+|+.|...|. ++..+|... .. +. ..+. +++.
T Consensus 323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~ 402 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 402 (598)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEE
Confidence 46899999999999999999999999997 788887531 01 11 1111 1210
Q ss_pred ---------------------cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 238 ---------------------VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 238 ---------------------~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
..++++++++|+|+.|+. +.+++.+++...... +..+|+.+
T Consensus 403 ~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa 464 (598)
T 3vh1_A 403 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA 464 (598)
T ss_dssp CCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred eccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEE
Confidence 013568889999999887 566888887765542 34566654
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.1 Score=54.53 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=62.7
Q ss_pred CEEEEEe-CChHHHH-HH----HHHhcCC-CEE----------EEECCCCc--HHHHHHcCCc--ccCHHHhccc--cCE
Q 046427 193 KTLAVMG-FGKVGTE-VA----RRAKGLG-MNV----------IAHDPYAQ--ADRARATGVG--LVSFEEAIST--ADF 249 (595)
Q Consensus 193 ktvGIIG-lG~IG~~-vA----~~l~~~G-~~V----------~~~d~~~~--~~~a~~~g~~--~~~l~ell~~--aD~ 249 (595)
.+||||| +|.||+. .+ +.++..+ ..+ .++|++.. ...+.+.|+. +.++++++++ .|+
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~ 86 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM 86 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence 3799999 9999998 66 6665433 332 37888763 3445567874 3589999976 899
Q ss_pred EEEeCCCChhccccccHHHHhcCCCceEEEeccC---CchhcHHHHHHHHhcCC
Q 046427 250 ISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR---GGVVDEEALVRALDSGI 300 (595)
Q Consensus 250 V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ar---g~~vd~~aL~~aL~~g~ 300 (595)
|++|+|... -. .-....|+.|.-++ |-. -.+-+.++|.++.++..
T Consensus 87 V~i~tp~~~-h~----~~~~~al~~Gk~V~-~EKP~a~~~~~~~~l~~~a~~~~ 134 (383)
T 3oqb_A 87 FFDAATTQA-RP----GLLTQAINAGKHVY-CEKPIATNFEEALEVVKLANSKG 134 (383)
T ss_dssp EEECSCSSS-SH----HHHHHHHTTTCEEE-ECSCSCSSHHHHHHHHHHHHHTT
T ss_pred EEECCCchH-HH----HHHHHHHHCCCeEE-EcCCCCCCHHHHHHHHHHHHHcC
Confidence 999999522 11 11233355565444 322 12234556666655443
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.16 Score=52.80 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=48.9
Q ss_pred EEEEEeCChHHHHHHHHHhcC-CCEEEEE-CCCCcH-H-H--------------------HHHcCCccc-CHHHhccccC
Q 046427 194 TLAVMGFGKVGTEVARRAKGL-GMNVIAH-DPYAQA-D-R--------------------ARATGVGLV-SFEEAISTAD 248 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~-~-~--------------------a~~~g~~~~-~l~ell~~aD 248 (595)
+|||+|+|+||+.+++.+... +++|.+. |..... . . ....++... +.++++.++|
T Consensus 4 kVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~vD 83 (343)
T 2yyy_A 4 KVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDAD 83 (343)
T ss_dssp EEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGCS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCCC
Confidence 799999999999999998765 5887765 322111 0 0 111111111 3556667899
Q ss_pred EEEEeCCCChhccccccHHHHhcCCCceEEEe
Q 046427 249 FISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 249 ~V~l~~Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
+|+.|+|... +..... -..++.|+.+|.
T Consensus 84 iV~eatg~~~-s~~~a~---~~~l~aG~~VI~ 111 (343)
T 2yyy_A 84 IVVDGAPKKI-GKQNLE---NIYKPHKVKAIL 111 (343)
T ss_dssp EEEECCCTTH-HHHHHH---HTTTTTTCEEEE
T ss_pred EEEECCCccc-cHHHHH---HHHHHCCCEEEE
Confidence 9999987432 111110 134666766664
|
| >3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.071 Score=54.15 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=43.3
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~ 572 (595)
..|.+..+|+||+|+.|++.|.++|+||..++.......+.-.|.++++.+
T Consensus 8 ~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 58 (287)
T 3nrb_A 8 YVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP 58 (287)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC
Confidence 567788999999999999999999999999998755666777888877653
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.12 Score=53.47 Aligned_cols=107 Identities=18% Similarity=0.277 Sum_probs=64.0
Q ss_pred CEEEEEeCChHHHHHHHHHhc-------CCCEEEE-ECCCCc-------H----HHHHHcC-Cc--ccCHHHhcc--ccC
Q 046427 193 KTLAVMGFGKVGTEVARRAKG-------LGMNVIA-HDPYAQ-------A----DRARATG-VG--LVSFEEAIS--TAD 248 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~-------~G~~V~~-~d~~~~-------~----~~a~~~g-~~--~~~l~ell~--~aD 248 (595)
-+|||+|+|.||+.+++.+.. .+++|.+ .|++.. . +...+.| +. ..+.++++. +.|
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~iD 84 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAAD 84 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCCS
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCCC
Confidence 379999999999999999875 3567666 455431 1 1122233 22 126677775 589
Q ss_pred EEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchh-cHHHHHHHHhcCC
Q 046427 249 FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV-DEEALVRALDSGI 300 (595)
Q Consensus 249 ~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v-d~~aL~~aL~~g~ 300 (595)
+|+.|+|... ..+-.-......++.|.-+|.+..+.+. .-+.|.++.++..
T Consensus 85 vVVe~T~~~~-~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g 136 (325)
T 3ing_A 85 LLVDCTPASR-DGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNS 136 (325)
T ss_dssp EEEECCCCCS-SSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCcc-ccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcC
Confidence 9999998531 1100012234446778777776665553 3456666655543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.064 Score=55.23 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=55.7
Q ss_pred cCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc------CHHHhc------cccCEEEEeCCC
Q 046427 191 VGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV------SFEEAI------STADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell------~~aD~V~l~~Pl 256 (595)
.|++|.|+|.| .||...++.++.+|.+|++.++.. ..+.++++|...+ ++.+.+ ...|+|+-|+..
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~ 223 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG 223 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence 57899999998 999999999999999999998765 4556666665321 222111 135666665542
Q ss_pred ChhccccccHHHHhcCCCceEEEecc
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+.+ ...+..++++..++.++
T Consensus 224 -~~~-----~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 224 -PDG-----NELAFSLRPNGHFLTIG 243 (340)
T ss_dssp -HHH-----HHHHHTEEEEEEEEECC
T ss_pred -hhH-----HHHHHHhcCCCEEEEEe
Confidence 111 12234566666666665
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.065 Score=55.21 Aligned_cols=62 Identities=6% Similarity=0.054 Sum_probs=44.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEE-ECCCC--cHHHH----HHcCC--c-ccCHHHhccc--cCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIA-HDPYA--QADRA----RATGV--G-LVSFEEAIST--ADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~--~~~~a----~~~g~--~-~~~l~ell~~--aD~V~l~~P 255 (595)
.++||||+|.+|+..++.+ .-++++.+ +|++. ..+.+ .+.|+ . +.++++++++ .|+|++|+|
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 76 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTV 76 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSS
T ss_pred eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 3799999999999777766 66788775 78754 12222 22354 2 3589999975 899999998
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.053 Score=54.62 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=33.9
Q ss_pred eecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.+.||++.|+| .|-||+++++.+...|.+|+.++++.
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~ 153 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 153 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence 47789999999 99999999999999999999998864
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.078 Score=46.87 Aligned_cols=97 Identities=19% Similarity=0.140 Sum_probs=66.9
Q ss_pred CEEEEEeC----ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 193 KTLAVMGF----GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 193 ktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
|+|+|||. ++.|..+.+.|+.+|++|+..+|.... -.|.. +.++.++-. -|++++++| .+.+..++.+-
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~dlp~-vDlavi~~p-~~~v~~~v~e~ 78 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE----VLGKTIINERPVIEG-VDTVTLYIN-PQNQLSEYNYI 78 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE----ETTEECBCSCCCCTT-CCEEEECSC-HHHHGGGHHHH
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc----CCCeeccCChHHCCC-CCEEEEEeC-HHHHHHHHHHH
Confidence 67999998 579999999999999999999986421 13443 347777777 999999999 45566666443
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
. .+...+++++.+ .. ++++.+..++..+
T Consensus 79 ~--~~g~k~v~~~~G---~~-~~e~~~~a~~~Gi 106 (122)
T 3ff4_A 79 L--SLKPKRVIFNPG---TE-NEELEEILSENGI 106 (122)
T ss_dssp H--HHCCSEEEECTT---CC-CHHHHHHHHHTTC
T ss_pred H--hcCCCEEEECCC---CC-hHHHHHHHHHcCC
Confidence 2 234446666543 23 3455666665545
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.054 Score=55.56 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=55.7
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC-cHHHH-HHcCCccc------CHHHhc-----cccCEEEEeCCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA-QADRA-RATGVGLV------SFEEAI-----STADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a-~~~g~~~~------~l~ell-----~~aD~V~l~~Pl 256 (595)
.|++|.|+|. |.||..+++.++..|++|++.+++. ..+.+ +++|...+ ++.+.+ ...|+++-++..
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 228 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG 228 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence 5789999999 9999999999999999999998765 33444 55665321 122211 135666655541
Q ss_pred ChhccccccHHHHhcCCCceEEEeccC
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
+ .-...+..|+++..++.++.
T Consensus 229 -~-----~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 229 -E-----ILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp -H-----HHHHHHTTEEEEEEEEECCC
T ss_pred -c-----hHHHHHHHHhhCCEEEEEee
Confidence 1 12334555666666666653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.19 Score=51.66 Aligned_cols=87 Identities=23% Similarity=0.169 Sum_probs=63.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcC-CCEEEEECCCC-cHHHHHHcCCccc-----CH----HHhcc--ccCEEEEeCCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGL-GMNVIAHDPYA-QADRARATGVGLV-----SF----EEAIS--TADFISLHMPLT 257 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~-~~~~a~~~g~~~~-----~l----~ell~--~aD~V~l~~Plt 257 (595)
.|.+|.|+|.|.+|...++.++.+ |.+|++.|+.. ..+.++++|...+ ++ .++.. ..|+|+-++...
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~ 250 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQ 250 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCH
Confidence 478999999999999999999987 78999998876 4566788887432 22 22222 689999988732
Q ss_pred hhccccccHHHHhcCCCceEEEecc
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~a 282 (595)
. + -...+..++++..++.++
T Consensus 251 ~-~----~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 251 S-T----IDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp H-H----HHHHHHHEEEEEEEEECS
T ss_pred H-H----HHHHHHHHhcCCEEEEEC
Confidence 1 2 134566788888888887
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.097 Score=53.56 Aligned_cols=45 Identities=27% Similarity=0.300 Sum_probs=36.0
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|+++.|.|. |.||..+++.++..|++|++.++.. ..+.+++.|.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~ 191 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF 191 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC
Confidence 5789999998 9999999999999999999998754 2233444443
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.07 Score=54.23 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=57.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc--CHHHhccccCEEEEeCCCChhccccccHHH
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV--SFEEAISTADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
.|++|.|+|.|.+|...++.++.+|.+|++.+.....+.++++|+..+ +.+++-...|+|+-|+.. +.+ ...
T Consensus 142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~-~~~-----~~~ 215 (315)
T 3goh_A 142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNS-QNA-----AAL 215 (315)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------TT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCc-hhH-----HHH
Confidence 578999999999999999999999999999993235677777876432 222223456777766653 211 234
Q ss_pred HhcCCCceEEEecc
Q 046427 269 FFKMKKGVRIVNVA 282 (595)
Q Consensus 269 l~~mk~gailiN~a 282 (595)
+..++++..++.++
T Consensus 216 ~~~l~~~G~~v~~g 229 (315)
T 3goh_A 216 VPSLKANGHIICIQ 229 (315)
T ss_dssp GGGEEEEEEEEEEC
T ss_pred HHHhcCCCEEEEEe
Confidence 55677777777763
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.083 Score=57.66 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=69.8
Q ss_pred CCEEEEEeCChHHHH-HHHHHhcCCCEEEEECCCCcH--HHHHHcCCccc--CHHHhccccCEEEEe--CCC-Chhcc--
Q 046427 192 GKTLAVMGFGKVGTE-VARRAKGLGMNVIAHDPYAQA--DRARATGVGLV--SFEEAISTADFISLH--MPL-TPATS-- 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aD~V~l~--~Pl-t~~t~-- 261 (595)
.|+|.|||+|.+|.+ +|+.|+..|++|.++|..... +..++.|+... .-.+.+.++|+|++. +|. +|+..
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~a 101 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAA 101 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHHH
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHH
Confidence 579999999999996 899999999999999976532 33456687543 123446789999986 332 12111
Q ss_pred -----ccccHH-HHh-cCCCc-eEEEeccCCchhcHHHHHHHHhcC
Q 046427 262 -----KMFNDE-AFF-KMKKG-VRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 262 -----~li~~~-~l~-~mk~g-ailiN~arg~~vd~~aL~~aL~~g 299 (595)
.++.+. .+. .|+.. .+-|-=+.|+.-...-+...|+..
T Consensus 102 ~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~ 147 (494)
T 4hv4_A 102 REARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEA 147 (494)
T ss_dssp HHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred HHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhc
Confidence 123332 232 24432 455555588886666666667654
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.073 Score=55.11 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=63.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--------CCEEEE-ECCCCcH--H------HHH---HcCCc--cc---CHHHhc-cc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--------GMNVIA-HDPYAQA--D------RAR---ATGVG--LV---SFEEAI-ST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--------G~~V~~-~d~~~~~--~------~a~---~~g~~--~~---~l~ell-~~ 246 (595)
-+|||||+|.||+.+++.+... +++|.+ +|++... . ... ..++. .. ++++++ .+
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~ 86 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD 86 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence 3799999999999999988653 367654 5765421 1 011 11321 12 788887 36
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchh-cHHHHHHHHhcCC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV-DEEALVRALDSGI 300 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v-d~~aL~~aL~~g~ 300 (595)
.|+|+.|+|.. .+.+.--.-....|+.|.-++.+....+. ..+.|.++.++..
T Consensus 87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~g 140 (331)
T 3c8m_A 87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNN 140 (331)
T ss_dssp CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcC
Confidence 89999999964 11111112233446677777765444443 3456666554443
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.099 Score=53.96 Aligned_cols=45 Identities=31% Similarity=0.505 Sum_probs=37.5
Q ss_pred cCCEEEEE-eCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVM-GFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGII-GlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|++|.|+ |.|.||...++.++.+|.+|++.+++. ..+.++++|.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 196 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA 196 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC
Confidence 68899999 799999999999999999999999865 3445555554
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.096 Score=56.14 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=59.8
Q ss_pred cCCEEEEEeCC----------hHHHHHHHHHhcCCCEEEEECCCCcHHHH----HHcC--------Ccc-cCHHHhcccc
Q 046427 191 VGKTLAVMGFG----------KVGTEVARRAKGLGMNVIAHDPYAQADRA----RATG--------VGL-VSFEEAISTA 247 (595)
Q Consensus 191 ~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a----~~~g--------~~~-~~l~ell~~a 247 (595)
.|++|+|+|+. .-...+++.|...|.+|.+|||+...... ...+ ..+ .++.+.+++|
T Consensus 312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (436)
T 1mv8_A 312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS 391 (436)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence 78999999997 46788999999999999999997422110 1111 122 3688999999
Q ss_pred CEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 248 D~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
|+|++++.- ++-+.+ + .+.|+ +.+|+|+
T Consensus 392 d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~ 419 (436)
T 1mv8_A 392 DVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL 419 (436)
T ss_dssp SEEEECSCC-GGGHHH-H---HSCCT-TCEEEES
T ss_pred cEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC
Confidence 999999874 433322 2 34455 5788887
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.082 Score=54.83 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=52.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcC---CCEEEEECCCCcHHHHH-------Hc-----------------C--Ccc---cCH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL---GMNVIAHDPYAQADRAR-------AT-----------------G--VGL---VSF 240 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~---G~~V~~~d~~~~~~~a~-------~~-----------------g--~~~---~~l 240 (595)
.+|||+|+|+||+.+.|.+... .++|.+.+...+.+... .. | +.. .+.
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp 80 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence 3799999999999999998754 58988664322111100 00 1 111 134
Q ss_pred HHh-cc--ccCEEEEeCCCChhccccccHHHHhcCCCce--EEEeccC
Q 046427 241 EEA-IS--TADFISLHMPLTPATSKMFNDEAFFKMKKGV--RIVNVAR 283 (595)
Q Consensus 241 ~el-l~--~aD~V~l~~Plt~~t~~li~~~~l~~mk~ga--iliN~ar 283 (595)
+++ +. .+|+|+.|+|.-. ++.... ..++.|+ ++|+.+.
T Consensus 81 ~~l~w~~~~vDvV~~atg~~~-s~e~a~----~~l~aGakkvVId~~a 123 (332)
T 1hdg_O 81 SKLPWKDLGVDFVIESTGVFR-NREKAE----LHLQAGAKKVIITAPA 123 (332)
T ss_dssp GGSCHHHHTCCEEEECSSSCC-BHHHHT----HHHHTTCSEEEESSCC
T ss_pred HHCcccccCCCEEEECCccch-hHHHHH----HHHHcCCcEEEEeCCC
Confidence 444 33 7999999999543 333222 2246688 9999865
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.066 Score=55.76 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=55.3
Q ss_pred cCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc------CHHHhcc-----ccCEEEEeCCCC
Q 046427 191 VGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV------SFEEAIS-----TADFISLHMPLT 257 (595)
Q Consensus 191 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell~-----~aD~V~l~~Plt 257 (595)
.|++|.|+| .|.||...++.++.+|.+|++.++.. ..+.+++.|...+ ++.+.++ ..|+|+-|+..
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~- 241 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG- 241 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence 478999999 79999999999999999999998864 3345556665321 2222221 35666665542
Q ss_pred hhccccccHHHHhcCCCceEEEecc
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+ .-...+..|+++..++.++
T Consensus 242 ~-----~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 242 A-----MFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp H-----HHHHHHHHEEEEEEEEECC
T ss_pred H-----HHHHHHHHHhcCCEEEEEe
Confidence 1 1123445556666666655
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.081 Score=54.23 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=37.6
Q ss_pred cCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|++|.|+| .|.||...++.++..|.+|++.+++. ..+.+++.|.
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga 194 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGA 194 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 578999999 89999999999999999999999865 3345566664
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.072 Score=54.26 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=64.2
Q ss_pred EEEEEeC-ChHHHHHHHHHhcCCCE-EEEECCCCcHHHHHHcCCcc-cCHHHhcc--ccCEEEEeCCCChhccccccHHH
Q 046427 194 TLAVMGF-GKVGTEVARRAKGLGMN-VIAHDPYAQADRARATGVGL-VSFEEAIS--TADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~a~~~g~~~-~~l~ell~--~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
++.|+|. |++|+.+++.++..|++ |...+|..... .-.|+.. .+++++.+ ..|++++++| .+.+...+.+ .
T Consensus 15 ~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~Dv~ii~vp-~~~~~~~v~e-a 90 (294)
T 2yv1_A 15 KAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQ--NVHGVPVFDTVKEAVKETDANASVIFVP-APFAKDAVFE-A 90 (294)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCC-HHHHHHHHHH-H
T ss_pred EEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCc--eECCEeeeCCHHHHhhcCCCCEEEEccC-HHHHHHHHHH-H
Confidence 4778899 99999999999988887 33567653111 1145543 47999998 8999999999 3444444432 2
Q ss_pred HhcCCCceEEEeccCC-chhcHHHHHHHHhcCCe
Q 046427 269 FFKMKKGVRIVNVARG-GVVDEEALVRALDSGII 301 (595)
Q Consensus 269 l~~mk~gailiN~arg-~~vd~~aL~~aL~~g~i 301 (595)
.+ .+... +|..+.| ...+++.+.++.++..+
T Consensus 91 ~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi 122 (294)
T 2yv1_A 91 ID-AGIEL-IVVITEHIPVHDTMEFVNYAEDVGV 122 (294)
T ss_dssp HH-TTCSE-EEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred HH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCC
Confidence 22 22222 4444443 22345677777766544
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.078 Score=57.44 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=49.3
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HH-HHHcCCccc-----C---HHHh-ccccCEEEEeCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DR-ARATGVGLV-----S---FEEA-ISTADFISLHMPL 256 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-a~~~g~~~~-----~---l~el-l~~aD~V~l~~Pl 256 (595)
.++|-|+|+|++|+.+|+.|...|.+|++.|.+... +. ..++++..+ + |+++ +++||+++.+++.
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~ 78 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT 78 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence 468999999999999999999999999999987632 22 234565321 2 4444 7889999888774
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.094 Score=54.36 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=58.9
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcHH---HHHH-cCCc------cc---CHHHhccccCEEEEeCCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQAD---RARA-TGVG------LV---SFEEAISTADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~---~a~~-~g~~------~~---~l~ell~~aD~V~l~~Pl 256 (595)
.+++|.|.|. |.||+.+++.|...|++|++.++..... .... .+++ .. ++.++++.+|+|+.++..
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 3678999995 9999999999998999999988765322 1111 1321 11 266778999999977654
Q ss_pred ChhccccccHHHHhcCCC-c--eEEEeccCCc
Q 046427 257 TPATSKMFNDEAFFKMKK-G--VRIVNVARGG 285 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~-g--ailiN~arg~ 285 (595)
.....+......+..++. | ..||++|...
T Consensus 84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~ 115 (352)
T 1xgk_A 84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD 115 (352)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence 311111222333333322 2 3777777653
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.079 Score=54.15 Aligned_cols=45 Identities=29% Similarity=0.405 Sum_probs=37.4
Q ss_pred cCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|++|.|+| .|.||...++.++..|.+|++.++.. ..+.+++.|.
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga 186 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA 186 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 578999999 89999999999999999999998765 3445556664
|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.34 Score=52.60 Aligned_cols=104 Identities=21% Similarity=0.276 Sum_probs=67.6
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEE--------ECCCC-cHHHH----HHcC-------CcccCHHHhc-ccc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA--------HDPYA-QADRA----RATG-------VGLVSFEEAI-STA 247 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a----~~~g-------~~~~~l~ell-~~a 247 (595)
.|.|+||.|-|+|++|+..|+.|...|.+|++ ||+.- +.+.. .+.| .+..+ ++++ ..|
T Consensus 241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~-~~il~~~~ 319 (501)
T 3mw9_A 241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE-GSILEVDC 319 (501)
T ss_dssp SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC-SCGGGSCC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec-cccccccc
Confidence 58999999999999999999999999999987 44442 22211 1112 11111 1333 479
Q ss_pred CEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 248 D~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
|+.+-|. +.+.|+.+....++ -.+|+-.+-+.+ ..+| .+.|.+..|
T Consensus 320 DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p~-T~eA-~~iL~~rGI 365 (501)
T 3mw9_A 320 DILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGPT-TPEA-DKIFLERNI 365 (501)
T ss_dssp SEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTC
T ss_pred eEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCcC-CHHH-HHHHHHCCC
Confidence 9888776 45677777777775 457777777764 4444 344544444
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.79 Score=48.55 Aligned_cols=66 Identities=30% Similarity=0.386 Sum_probs=50.1
Q ss_pred eecCCEEEEEeC-----C---hHHHHHHHHHhcCCCEEEEECCCC---cHHH-------HHHcCCc---ccCHHHhcccc
Q 046427 189 SLVGKTLAVMGF-----G---KVGTEVARRAKGLGMNVIAHDPYA---QADR-------ARATGVG---LVSFEEAISTA 247 (595)
Q Consensus 189 ~l~gktvGIIGl-----G---~IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~a 247 (595)
.|.|++|+|+|- | ++..+++..+..+|++|....|.. .++. +.+.|.. ..++++.+++|
T Consensus 188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~a 267 (399)
T 3q98_A 188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDA 267 (399)
T ss_dssp GGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTC
T ss_pred ccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCC
Confidence 378999999974 4 788999999999999999988752 2221 2244643 24899999999
Q ss_pred CEEEEeC
Q 046427 248 DFISLHM 254 (595)
Q Consensus 248 D~V~l~~ 254 (595)
|+|..-+
T Consensus 268 DvVytd~ 274 (399)
T 3q98_A 268 DIVYPKS 274 (399)
T ss_dssp SEEEECC
T ss_pred CEEEecC
Confidence 9998743
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.065 Score=56.96 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=54.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC---CEEEEECCCCcH--HHHHHc------CCc--------ccCHHHhccc--cCEEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG---MNVIAHDPYAQA--DRARAT------GVG--------LVSFEEAIST--ADFIS 251 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G---~~V~~~d~~~~~--~~a~~~------g~~--------~~~l~ell~~--aD~V~ 251 (595)
++++|+|.|.||+.+++.+...| .+|.++|++... ..+.+. .+. ..++++++++ +|+|+
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi 81 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL 81 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence 58999999999999999999887 499999987532 112221 121 1136677877 89999
Q ss_pred EeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 252 LHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 252 l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.++|... ...++ . ..++.|.-+++++
T Consensus 82 n~ag~~~-~~~v~-~---a~l~~g~~vvD~a 107 (405)
T 4ina_A 82 NIALPYQ-DLTIM-E---ACLRTGVPYLDTA 107 (405)
T ss_dssp ECSCGGG-HHHHH-H---HHHHHTCCEEESS
T ss_pred ECCCccc-ChHHH-H---HHHHhCCCEEEec
Confidence 9987422 11111 1 1234566677664
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.99 E-value=0.12 Score=54.08 Aligned_cols=45 Identities=31% Similarity=0.368 Sum_probs=37.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|++|.|+|.|.+|...++.++.+| .+|++.++.. ..+.++++|.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa 241 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 241 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC
Confidence 4789999999999999999999999 6999999765 3455566665
|
| >3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.21 Score=52.33 Aligned_cols=136 Identities=17% Similarity=0.251 Sum_probs=85.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhc-
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFK- 271 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~- 271 (595)
.++.|+|.|.+|+++|+.++.+|++|.++|++.... + .+-++.+|-++..-| .+.+..
T Consensus 200 ~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~----------~-~~~fp~a~~v~~~~p----------~~~~~~~ 258 (362)
T 3on5_A 200 ERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQC----------E-KHFFPDADEIIVDFP----------ADFLRKF 258 (362)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGG----------C-GGGCTTCSEEEESCH----------HHHHHHS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcccc----------c-cccCCCceEEecCCH----------HHHHhhc
Confidence 479999999999999999999999999999865321 1 122455665555443 112222
Q ss_pred -CCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccc----cCCcEEEcC---CCCCCcHHHHHHH
Q 046427 272 -MKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLV----LHENVTVTP---HLGASTTEAQEGV 343 (595)
Q Consensus 272 -mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~----~~~nvilTP---Hi~~~t~ea~~~~ 343 (595)
+.++..+|=+.++.-.|...|..+|+.. .+..|+ -+.- .....|+ ...+ +-+| .|++-|.+ .+
T Consensus 259 ~~~~~t~vvv~TH~h~~D~~~L~~aL~~~-~~YiG~--iGSr--~R~~rl~~~g~~~~r-i~~PIGL~Iga~tP~---EI 329 (362)
T 3on5_A 259 LIRPDDFVLIMTHHFQKDQEILHFLLEKE-LRYIGI--LGSK--ERTRRLLQNRKPPDH-LYSPVGLSIDAQGPE---EI 329 (362)
T ss_dssp CCCTTCEEEECCSCHHHHHHHHHHHSSSC-CSEEEE--SSCH--HHHHHHHTSCCCCTT-EESSCSCCSCCCSHH---HH
T ss_pred CCCCCeEEEEEeCCchhhHHHHHHHhcCC-CCEEEE--eCCH--HHHHHHHhcCCcHhh-eECCCCCCCCCCCHH---HH
Confidence 5677888888888888888888888774 222221 0000 0000111 0122 4555 25677774 46
Q ss_pred HHHHHHHHHHHHcCC
Q 046427 344 AIEIAEAVIGALKGE 358 (595)
Q Consensus 344 ~~~~~~~l~~~l~g~ 358 (595)
|..++-+|....++.
T Consensus 330 AvSI~AEiia~~~~~ 344 (362)
T 3on5_A 330 AISIVAQLIQLIRSR 344 (362)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCC
Confidence 677777888877776
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.65 Score=49.87 Aligned_cols=124 Identities=17% Similarity=0.098 Sum_probs=92.0
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC-
Q 046427 138 HGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM- 216 (595)
Q Consensus 138 ~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~- 216 (595)
..|.|.|+- -..+|=-+++-+++.+| ..|..|...+|.|.|.|.-|-.+|+.+...|.
T Consensus 186 ~~ipvFnDD---~qGTA~V~lAgllnAlk------------------i~gk~l~d~riV~~GAGaAGigia~ll~~~G~~ 244 (487)
T 3nv9_A 186 CDIPVWHDD---QQGTASVTLAGLLNALK------------------LVKKDIHECRMVFIGAGSSNTTCLRLIVTAGAD 244 (487)
T ss_dssp CSSCEEETT---THHHHHHHHHHHHHHHH------------------HHTCCGGGCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred ccCCccccc---cchHHHHHHHHHHHHHH------------------HhCCChhhcEEEEECCCHHHHHHHHHHHHcCCC
Confidence 389999985 45567778888888777 23567888999999999999999999999998
Q ss_pred --EEEEECCCC-----cHHH------------HHHcCC-cccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCce
Q 046427 217 --NVIAHDPYA-----QADR------------ARATGV-GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGV 276 (595)
Q Consensus 217 --~V~~~d~~~-----~~~~------------a~~~g~-~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~ga 276 (595)
+++.+|+.- .... +...+- ...+|.|+++.+|+++=.- .. .-+.+.++.++.|.+..
T Consensus 245 ~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S-~~--~pg~ft~e~V~~Ma~~P 321 (487)
T 3nv9_A 245 PKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLS-TP--GPGVVKAEWIKSMGEKP 321 (487)
T ss_dssp GGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECC-CS--SCCCCCHHHHHTSCSSC
T ss_pred cccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEec-cc--CCCCCCHHHHHhhcCCC
Confidence 799998751 1111 111111 2347999999999775432 11 14789999999999999
Q ss_pred EEEeccCCc
Q 046427 277 RIVNVARGG 285 (595)
Q Consensus 277 iliN~arg~ 285 (595)
+|.-.|.-.
T Consensus 322 IIFaLSNPt 330 (487)
T 3nv9_A 322 IVFCCANPV 330 (487)
T ss_dssp EEEECCSSS
T ss_pred EEEECCCCC
Confidence 999888543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.35 Score=47.44 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=33.1
Q ss_pred eecCCEEEEEeC-Ch--HHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GK--VGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~--IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
++.||++.|.|. |. ||+++|+.+...|++|+..++..
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 43 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE 43 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence 588999999997 55 99999999999999999988764
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=92.94 E-value=0.2 Score=52.34 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=59.0
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCC-CEEEEECCCC-c-HHHH-------HHcCCcccCHHHhccccCEEEEeCCCChhcc
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLG-MNVIAHDPYA-Q-ADRA-------RATGVGLVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~-~-~~~a-------~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.+||||| .|.+|+.+.+.|...- .++....... . .... .+.-++..+.++++.++|++++|+|... ++
T Consensus 14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~-s~ 92 (351)
T 1vkn_A 14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA-SY 92 (351)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH-HH
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHH-HH
Confidence 4799997 5999999999998664 4666553221 1 1111 1112222356676789999999999533 33
Q ss_pred ccccHHHHhcCCCceEEEeccCCchhcHHHHH
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~vd~~aL~ 293 (595)
+....+ .|+.+||.|..=-.+..+.+
T Consensus 93 -----~~~~~~-~g~~VIDlSsdfRl~~~~~y 118 (351)
T 1vkn_A 93 -----DLVREL-KGVKIIDLGADFRFDDPGVY 118 (351)
T ss_dssp -----HHHTTC-CSCEEEESSSTTTCSSHHHH
T ss_pred -----HHHHHh-CCCEEEECChhhhCCchhhh
Confidence 333445 79999999854434433333
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.91 E-value=0.12 Score=54.32 Aligned_cols=46 Identities=37% Similarity=0.437 Sum_probs=38.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 236 (595)
.|++|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+.
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 232 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE 232 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc
Confidence 47899999999999999999999999 799998765 34566777764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.1 Score=55.08 Aligned_cols=92 Identities=20% Similarity=0.172 Sum_probs=60.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc-----CH-HHhcc------ccCEEEEeCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV-----SF-EEAIS------TADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~-----~l-~ell~------~aD~V~l~~Pl 256 (595)
.|++|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|...+ ++ .+.+. ..|+|+-++..
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~ 264 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGF 264 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence 47899999999999999999999999 999999765 3456667775322 11 22111 46777777763
Q ss_pred Chh----------ccccccHHHHhcCCCceEEEeccC
Q 046427 257 TPA----------TSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 257 t~~----------t~~li~~~~l~~mk~gailiN~ar 283 (595)
... .... -...+..++++..++.++-
T Consensus 265 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 265 EAHGLGDEANTETPNGA-LNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp TCBCSGGGTTSBCTTHH-HHHHHHHEEEEEEEECCSC
T ss_pred ccccccccccccccHHH-HHHHHHHHhcCCEEEEecc
Confidence 210 0001 1334566777777777653
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.11 Score=54.22 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=50.8
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCC-CEEEEE-CCC-Cc-HHHHHHc-------------CCccc--CHHHhccccCEEEE
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLG-MNVIAH-DPY-AQ-ADRARAT-------------GVGLV--SFEEAISTADFISL 252 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G-~~V~~~-d~~-~~-~~~a~~~-------------g~~~~--~l~ell~~aD~V~l 252 (595)
.+|||+| .|.||+.+.+.|.... +++.+. +.. .. ....... .+... +.++ +.++|+|++
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~ 83 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS 83 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence 4799999 8999999999998654 677766 322 11 1111111 11121 3334 478999999
Q ss_pred eCCCChhccccccHHHHhcCCCceEEEeccC
Q 046427 253 HMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 253 ~~Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
|+|.. .+..+.. ..++.|+.+|+.+.
T Consensus 84 atp~~-~s~~~a~----~~~~aG~~VId~s~ 109 (350)
T 2ep5_A 84 ALPNE-LAESIEL----ELVKNGKIVVSNAS 109 (350)
T ss_dssp CCCHH-HHHHHHH----HHHHTTCEEEECSS
T ss_pred CCChH-HHHHHHH----HHHHCCCEEEECCc
Confidence 99842 2332221 12456777888763
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.082 Score=54.34 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=32.1
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+++.|+|. |.||..+++.++..|.+|++.+++.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~ 190 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK 190 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5789999997 9999999999999999999998764
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.15 Score=51.78 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=55.2
Q ss_pred CEEEEEe-CChHHHHHHHHHh-cCCCEEEE-ECCCCcH----HHHH-----HcCCcc-cCHHHhccccCEEEEeCCCChh
Q 046427 193 KTLAVMG-FGKVGTEVARRAK-GLGMNVIA-HDPYAQA----DRAR-----ATGVGL-VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~-~~G~~V~~-~d~~~~~----~~a~-----~~g~~~-~~l~ell~~aD~V~l~~Plt~~ 259 (595)
.+|+|+| +|+||+.+++.+. .-++++.+ +|+..+. +... ..|+.. .++++++.++|+|+-+.+ .+.
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~-p~a 100 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ-PQA 100 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC-HHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC-HHH
Confidence 3799999 9999999999987 45788766 5765321 1111 234443 389999999999998775 222
Q ss_pred ccccccHHHHhcCCCceEEEeccCC
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg 284 (595)
+...+ . ..++.|.-+|-...|
T Consensus 101 ~~~~~--~--~~l~~Gv~vViGTTG 121 (288)
T 3ijp_A 101 SVLYA--N--YAAQKSLIHIIGTTG 121 (288)
T ss_dssp HHHHH--H--HHHHHTCEEEECCCC
T ss_pred HHHHH--H--HHHHcCCCEEEECCC
Confidence 22211 1 124556666655555
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=92.75 E-value=0.088 Score=54.33 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=46.8
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCC--CEEEEECCCCcHHHH---HHcCC----cc----cCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLG--MNVIAHDPYAQADRA---RATGV----GL----VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a---~~~g~----~~----~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|+| .|.+|..++..|...| .+|..+|.......+ .+... .. .++.+.+++||+|+++.+.
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~ 86 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV 86 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence 5899999 8999999999998777 789999976532211 11111 11 1467889999999999874
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.17 Score=52.39 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=37.9
Q ss_pred cCCEEEEEeCChHHHHH-HHHH-hcCCCE-EEEECCCCc----HHHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEV-ARRA-KGLGMN-VIAHDPYAQ----ADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~v-A~~l-~~~G~~-V~~~d~~~~----~~~a~~~g~~ 236 (595)
.+++|.|+|.|.+|... ++.+ +.+|.+ |++.++... .+.++++|+.
T Consensus 172 ~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~ 224 (357)
T 2b5w_A 172 DPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT 224 (357)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCc
Confidence 34899999999999999 9999 999997 999988654 4556667753
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.65 E-value=0.12 Score=52.78 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=32.0
Q ss_pred cCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+++.|.| .|.||..+++.++..|.+|++.+++.
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~ 175 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA 175 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999 79999999999999999999998764
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.1 Score=46.29 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=44.2
Q ss_pred CCEEEEEeCChHHHHHHHHHhcC-CCEEEEE-CCCCcHHHHHHcCCccc---CHHHhcc--ccCEEEEeCCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGL-GMNVIAH-DPYAQADRARATGVGLV---SFEEAIS--TADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~a~~~g~~~~---~l~ell~--~aD~V~l~~Plt 257 (595)
.+++.|+|.|..|+.+++.++.. |+++++| |.........-.|+... ++.++++ ..|.|++++|..
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTTS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46899999999999999999853 8998886 65432110011233322 4555554 478999999854
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.083 Score=55.36 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=24.1
Q ss_pred EEEEEeCChHHHHHHHHHhcC----CCEEEE-ECC
Q 046427 194 TLAVMGFGKVGTEVARRAKGL----GMNVIA-HDP 223 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~----G~~V~~-~d~ 223 (595)
+|||||+|.||+.+++.++.. +++|.+ +|.
T Consensus 6 ~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~ 40 (358)
T 1ebf_A 6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA 40 (358)
T ss_dssp EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 799999999999999999864 356655 464
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.17 Score=48.62 Aligned_cols=67 Identities=18% Similarity=0.089 Sum_probs=47.7
Q ss_pred ecCCEEEEEe-CChHHHHHHHHHhcC--CCEEEEECCCCcHHHHHHcCCcc--------cCHHHhccccCEEEEeCCC
Q 046427 190 LVGKTLAVMG-FGKVGTEVARRAKGL--GMNVIAHDPYAQADRARATGVGL--------VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 190 l~gktvGIIG-lG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~g~~~--------~~l~ell~~aD~V~l~~Pl 256 (595)
..+|++.|.| .|.||+.+++.|... |++|++.++..........++.. .+++++++++|+|+.+...
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 79 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA 79 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence 3578999998 599999999999988 89999998864221111122221 1356778889999887754
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=92.59 E-value=0.17 Score=55.70 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=70.3
Q ss_pred ecCCEEEEEeCChHHHH-HHHHHhcCCCEEEEECCCCc---HHHHHHcCCccc---CHHHhccccCEEEEe--CCC-Chh
Q 046427 190 LVGKTLAVMGFGKVGTE-VARRAKGLGMNVIAHDPYAQ---ADRARATGVGLV---SFEEAISTADFISLH--MPL-TPA 259 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~---~~~a~~~g~~~~---~l~ell~~aD~V~l~--~Pl-t~~ 259 (595)
..+++|-|||.|.+|.+ +|+.|+..|++|.++|.... .+..++.|++.. +.+++..++|+|+.. +|. +|+
T Consensus 17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~ 96 (524)
T 3hn7_A 17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDV 96 (524)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHH
T ss_pred ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHH
Confidence 45789999999999997 79999999999999997642 234456687543 345666789999985 332 222
Q ss_pred cc-------ccccHHH-Hhc--CCC-ceEEEeccCCchhcHHHHHHHHhcC
Q 046427 260 TS-------KMFNDEA-FFK--MKK-GVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 260 t~-------~li~~~~-l~~--mk~-gailiN~arg~~vd~~aL~~aL~~g 299 (595)
.. .++.+.+ +.. ++. ..+-|-=+.|+.-...-+...|+..
T Consensus 97 l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~ 147 (524)
T 3hn7_A 97 IEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYA 147 (524)
T ss_dssp HHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHc
Confidence 21 2333333 332 333 2455555578886666666666643
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.41 Score=49.86 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=56.6
Q ss_pred ecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc------CHHHhcc-----ccCEEEEeCCCC
Q 046427 190 LVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV------SFEEAIS-----TADFISLHMPLT 257 (595)
Q Consensus 190 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~------~l~ell~-----~aD~V~l~~Plt 257 (595)
-.|++|.|+|. |.+|...++.++.+|.+|++.......+.++++|...+ ++.+.+. ..|+++-|+..
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~- 241 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITN- 241 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCS-
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCc-
Confidence 46889999999 89999999999999999998753234566777776421 2222221 26777766652
Q ss_pred hhccccccHHHHhcC-CCceEEEecc
Q 046427 258 PATSKMFNDEAFFKM-KKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~li~~~~l~~m-k~gailiN~a 282 (595)
+.+ -...+..+ +++..++.++
T Consensus 242 ~~~----~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 242 VES----TTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp HHH----HHHHHHHSCTTCEEEEESS
T ss_pred hHH----HHHHHHHhhcCCCEEEEEe
Confidence 111 12234445 4666666664
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.064 Score=55.26 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=32.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
.|++|.|+|.|.+|...++.++.+|. +|++.++..
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~ 199 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNP 199 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 68899999999999999999999999 999999754
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=92.56 E-value=0.24 Score=53.49 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=70.2
Q ss_pred CEEEEEeCChH-HHHHHHHHhc----C-CCEEEEECCCC--cHHH-----HH----HcCC----cc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKV-GTEVARRAKG----L-GMNVIAHDPYA--QADR-----AR----ATGV----GL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~I-G~~vA~~l~~----~-G~~V~~~d~~~--~~~~-----a~----~~g~----~~-~~l~ell~~aD~V 250 (595)
.+|+|||.|.. |..++..+.. + +.+|..||... .... .. ..+. .. .++.+.++.||+|
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~V 87 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 87 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCEE
Confidence 58999999998 7776655543 4 56899999876 3211 11 1221 11 3678899999999
Q ss_pred EEeCCCChh---cc--------cc--------------------cc--HHHHhcCCCceEEEeccCCchhcHHHHHHHHh
Q 046427 251 SLHMPLTPA---TS--------KM--------------------FN--DEAFFKMKKGVRIVNVARGGVVDEEALVRALD 297 (595)
Q Consensus 251 ~l~~Plt~~---t~--------~l--------------------i~--~~~l~~mk~gailiN~arg~~vd~~aL~~aL~ 297 (595)
++++|.... ++ ++ +. .+.+....|+++++|.+---=+-..++.+...
T Consensus 88 Vitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~~p 167 (450)
T 1s6y_A 88 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTK 167 (450)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHCC
T ss_pred EEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCC
Confidence 999995321 11 11 10 12344567899999987543334566666654
Q ss_pred cCCeeEEE
Q 046427 298 SGIISQAA 305 (595)
Q Consensus 298 ~g~i~ga~ 305 (595)
..++.|.+
T Consensus 168 ~~rViG~c 175 (450)
T 1s6y_A 168 QEKVVGLC 175 (450)
T ss_dssp CCCEEECC
T ss_pred CCCEEEeC
Confidence 44776653
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.21 Score=50.42 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=31.6
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.||+|.|.|. |.||+.+++.|...|++|++.++..
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~ 37 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRS 37 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCC
Confidence 5789999997 9999999999999999999999865
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.22 Score=51.34 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=54.6
Q ss_pred CCEEEEE-eCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc------CHHHhc------cccCEEEEeCCCC
Q 046427 192 GKTLAVM-GFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV------SFEEAI------STADFISLHMPLT 257 (595)
Q Consensus 192 gktvGII-GlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell------~~aD~V~l~~Plt 257 (595)
++++.|. |.|.||...++.++.+|.+|++.+++. ..+.++++|...+ ++.+.+ ...|+|+-|+..
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~- 243 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG- 243 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCH-
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCC-
Confidence 3567665 899999999999999999999998765 4456666775321 222211 246777666542
Q ss_pred hhccccccHHHHhcCCCceEEEecc
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+. + ...+..|+++..++.++
T Consensus 244 ~~----~-~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 244 PL----A-SAIFNAMPKRARWIIYG 263 (349)
T ss_dssp HH----H-HHHHHHSCTTCEEEECC
T ss_pred hh----H-HHHHhhhcCCCEEEEEe
Confidence 11 1 33455566666666664
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.081 Score=52.52 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=45.5
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc--------cCHHHhccc-cCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL--------VSFEEAIST-ADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------~~l~ell~~-aD~V~l~~P 255 (595)
.+++|.|.|.|.||+.+++.|...|++|++.++..... ..+++. .+++++++. +|+|+-+..
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPM---PAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCC---CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcccc---ccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 35789999999999999999999999999998865321 122221 134556666 999887664
|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=92.42 E-value=0.21 Score=47.46 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=36.6
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD 570 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d 570 (595)
..|.+..+|+||+++.|++.|.++|.||...+.... .++-++ .+.++
T Consensus 6 ~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~-~~~f~m-~~~v~ 52 (195)
T 2nyi_A 6 FVVSVAGSDRVGIVHDFSWALKNISANVESSRMACL-GGDFAM-IVLVS 52 (195)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEE-EEEEE
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEE-CCeEEE-EEEEE
Confidence 456778899999999999999999999999998753 343333 44443
|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
Probab=92.36 E-value=0.14 Score=48.45 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=32.1
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeee
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRI 557 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~ 557 (595)
.+.|.+..+|+||+++.|++.|+++++||.+++....
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~ 129 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTI 129 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcc
Confidence 3566677899999999999999999999999888643
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.11 Score=51.44 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=46.7
Q ss_pred CEEEEEe-CChHHHHHHHHHhcC-CCEEEEECCCCcH-HHHHHcCCcc--------cCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGL-GMNVIAHDPYAQA-DRARATGVGL--------VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~-G~~V~~~d~~~~~-~~a~~~g~~~--------~~l~ell~~aD~V~l~~Plt 257 (595)
++|.|.| .|.||+.+++.|... |.+|.+.++.... ......+++. .++.++++.+|+|+.+.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~ 76 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII 76 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence 3688998 599999999999887 8999999876532 1112234332 13677899999999887643
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=0.078 Score=56.89 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=69.7
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH---HHHHHcCCccc---CHHHhccccCEEEEeCCCC---hh
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA---DRARATGVGLV---SFEEAISTADFISLHMPLT---PA 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt---~~ 259 (595)
++.+|+|.|||+|..|.+.|+.|+..|++|.++|..... .... .|++.. ...+.+..+|.|++.-... |+
T Consensus 2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~ 80 (439)
T 2x5o_A 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPS 80 (439)
T ss_dssp CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHH
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHH
Confidence 367899999999999999999999999999999976421 2223 566542 1245666899999874322 22
Q ss_pred c-------cccccHH-HH-hcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 260 T-------SKMFNDE-AF-FKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 260 t-------~~li~~~-~l-~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
. ..++... .+ ..++...+-|-=+.|+--...-+...|++
T Consensus 81 ~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~ 128 (439)
T 2x5o_A 81 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 128 (439)
T ss_dssp HHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 1 1233332 11 22454455565557887655555556654
|
| >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.29 Score=44.88 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=50.5
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCc---HHHHHHHhcCCCcceEEEEe
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPS---REVLKKIGETPAIEEFVFLK 594 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~---~e~l~~L~~~~~v~~v~~i~ 594 (595)
|-+...|++|++..|+++|+++++||..+++... +. +.+++..... ..+.+++++++++..++.++
T Consensus 3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~--i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~ 71 (190)
T 2jhe_A 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GR--IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 (190)
T ss_dssp EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TE--EEEEECCCCHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CE--EEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEec
Confidence 4577899999999999999999999999999432 32 5566654322 26888889999988776543
|
| >3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=2.6 Score=44.00 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=65.8
Q ss_pred hhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-------ChHHH
Q 046427 133 SAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-------GKVGT 205 (595)
Q Consensus 133 ~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-------G~IG~ 205 (595)
+.|.-..|+|.|. |.+..++ .+++=++.+.+++ | ..++.|++++++|. .++.+
T Consensus 151 ~~a~~~~vPVIN~-g~~~HPt--QaL~Dl~Ti~e~~---------G--------~~dl~g~kv~~~~~~~gd~~~~~Va~ 210 (359)
T 3kzn_A 151 SFAKYSPVPVINM-ETITHPC--QELAHALALQEHF---------G--------TPDLRGKKYVLTWTYHPKPLNTAVAN 210 (359)
T ss_dssp HHHHHCSSCEEES-SSSCCHH--HHHHHHHHHHHHH---------T--------SSCCTTCEEEEEECCCSSCCCSHHHH
T ss_pred HHHHhCCCcccCc-ccccCch--HHHHHHHHHHHHc---------C--------CccccCCeEEEEEeecCCccccchhh
Confidence 3455678999996 4443332 2233233333211 1 12588999999976 36899
Q ss_pred HHHHHHhcCCCEEEEECCCC----cHH-------HHHHcCCc--c-cCHHHhccccCEEEEeC
Q 046427 206 EVARRAKGLGMNVIAHDPYA----QAD-------RARATGVG--L-VSFEEAISTADFISLHM 254 (595)
Q Consensus 206 ~vA~~l~~~G~~V~~~d~~~----~~~-------~a~~~g~~--~-~~l~ell~~aD~V~l~~ 254 (595)
+....+..+|++|..+-|.+ ... .+.+.|.. . .++++++++||+|..-.
T Consensus 211 S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDvvyt~r 273 (359)
T 3kzn_A 211 SALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKS 273 (359)
T ss_dssp HHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHHTTCSEEEEEC
T ss_pred hhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhhCCCcccccCHHHHhcCCeEEEEEE
Confidence 99999999999999987742 111 12333432 2 38999999999998754
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.13 Score=52.49 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=46.3
Q ss_pred eeecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc--------cCHHHhccccCEEEEeCCCC
Q 046427 188 VSLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL--------VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 188 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------~~l~ell~~aD~V~l~~Plt 257 (595)
....+|+|.|.|. |.||+.+++.|...|++|++.++.... .++.. .++.++++++|+|+-+....
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~ 88 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-----TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM 88 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-----SCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-----CCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence 4688999999997 999999999999999999999886532 22221 13667888999998776543
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.32 Score=49.86 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=60.6
Q ss_pred CEEEEEe-CChHHHHHHHHHhc---CCCEEEEECCCCc-HHHHHH---cCC--cc-----cCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMG-FGKVGTEVARRAKG---LGMNVIAHDPYAQ-ADRARA---TGV--GL-----VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~---~G~~V~~~d~~~~-~~~a~~---~g~--~~-----~~l~ell~~aD~V~l~~Plt 257 (595)
++|+||| .|.+|+++|..+.. +..++..+|.... ...+.+ ... .. .+..+.+++||+|+++.+..
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~ 80 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA 80 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence 4799999 99999999999863 5568999998651 111111 111 11 14578899999999998632
Q ss_pred h---hcc-ccc--cH-------HHHhcCCCceEEEeccCCchhcHHH
Q 046427 258 P---ATS-KMF--ND-------EAFFKMKKGVRIVNVARGGVVDEEA 291 (595)
Q Consensus 258 ~---~t~-~li--~~-------~~l~~mk~gailiN~arg~~vd~~a 291 (595)
. .++ +++ |. +.+....|++++++++ ..+|.-.
T Consensus 81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t 125 (312)
T 3hhp_A 81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTV 125 (312)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHH
Confidence 1 111 111 11 1233346788999995 4555433
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.19 Score=52.03 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=52.2
Q ss_pred EEEEEeCChHHHHHHHHHhcC-CCEEEEECCCCcHHH----H---HHc-----------------C--Ccc---cCHHHh
Q 046427 194 TLAVMGFGKVGTEVARRAKGL-GMNVIAHDPYAQADR----A---RAT-----------------G--VGL---VSFEEA 243 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~~~----a---~~~-----------------g--~~~---~~l~el 243 (595)
+|||+|+|+||+.+.|.+... .++|.+.+.....+. . ... | +.. .+.+++
T Consensus 3 kVgI~G~G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~i 82 (334)
T 3cmc_O 3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENL 82 (334)
T ss_dssp EEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGGC
T ss_pred EEEEECCCHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCChhhc
Confidence 799999999999999998765 678877643321110 0 000 1 111 134444
Q ss_pred -cc--ccCEEEEeCCCChhccccccHHHHhcCCCce--EEEeccCC
Q 046427 244 -IS--TADFISLHMPLTPATSKMFNDEAFFKMKKGV--RIVNVARG 284 (595)
Q Consensus 244 -l~--~aD~V~l~~Plt~~t~~li~~~~l~~mk~ga--iliN~arg 284 (595)
+. .+|+|+.|+|.-. ++.... ..++.|+ ++|+.+..
T Consensus 83 ~w~~~~vDvV~~atg~~~-s~e~a~----~~l~~Gak~vVId~pa~ 123 (334)
T 3cmc_O 83 AWGEIGVDIVVESTGRFT-KREDAA----KHLEAGAKKVIISAPAK 123 (334)
T ss_dssp CTGGGTCCEEEECSSSCC-BHHHHT----HHHHTTCSEEEESSCCB
T ss_pred CcccCccCEEEECCCchh-hHHHHH----HHHHCCCCEEEEeCCCc
Confidence 33 7999999999543 333322 2245688 99997653
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=92.13 E-value=0.13 Score=49.49 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=48.3
Q ss_pred ecCCEEEEEe-CChHHHHHHHHHhcCCC--EEEEECCCCcH-HHHHHcCCc--------ccCHHHhccccCEEEEeCCCC
Q 046427 190 LVGKTLAVMG-FGKVGTEVARRAKGLGM--NVIAHDPYAQA-DRARATGVG--------LVSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 190 l~gktvGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~~~~~-~~a~~~g~~--------~~~l~ell~~aD~V~l~~Plt 257 (595)
+.+|++.|.| .|.||+.+++.|...|. +|++.++.... ......++. ..+++++++.+|+|+.+....
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~ 95 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT 95 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence 5678999999 59999999999999999 99999876521 111111221 113566778889998887654
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.14 Score=52.02 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=32.7
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
.|++++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 33 kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 33 KIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 5899999999999999999999998885 788888654
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=92.06 E-value=0.09 Score=54.64 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=54.9
Q ss_pred CEEEEEe-CChHHHHHHHHHhc-CCCEEEEECCCC---c--HHHHH----HcC---Cccc---CHHHhccccCEEEEeCC
Q 046427 193 KTLAVMG-FGKVGTEVARRAKG-LGMNVIAHDPYA---Q--ADRAR----ATG---VGLV---SFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~-~G~~V~~~d~~~---~--~~~a~----~~g---~~~~---~l~ell~~aD~V~l~~P 255 (595)
.+|+|+| .|.+|+.+.+.|.. -.+++....... . ..... -.+ .... +.+++++++|+|++|+|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p 84 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA 84 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence 4799999 69999999999986 456776653211 1 11110 012 1111 45556689999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
. ..++.+... .++.|+.+||.|.--
T Consensus 85 ~-~~s~~~~~~----~~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 85 H-EVSHDLAPQ----FLEAGCVVFDLSGAF 109 (337)
T ss_dssp H-HHHHHHHHH----HHHTTCEEEECSSTT
T ss_pred h-HHHHHHHHH----HHHCCCEEEEcCCcc
Confidence 3 323333221 246799999998543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.18 Score=51.88 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=32.2
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+++.|+|. |.||..+++.++.+|.+|++.+++.
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~ 201 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE 201 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4789999999 9999999999999999999998764
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.16 Score=51.68 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=63.1
Q ss_pred EEEEEeC-ChHHHHHHHHHhcCCCEE-EEECCCCcHHHHHHcCCcc-cCHHHhcc--c-cCEEEEeCCCChhccccccHH
Q 046427 194 TLAVMGF-GKVGTEVARRAKGLGMNV-IAHDPYAQADRARATGVGL-VSFEEAIS--T-ADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~~G~~V-~~~d~~~~~~~a~~~g~~~-~~l~ell~--~-aD~V~l~~Plt~~t~~li~~~ 267 (595)
++.|+|. |++|+.+++.++..|+++ ...+|..... .-.|+.. .+++++.+ . .|++++++|- +.+...+.+
T Consensus 15 ~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~~DvaIi~vp~-~~~~~~v~e- 90 (297)
T 2yv2_A 15 RVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGS--EVHGVPVYDSVKEALAEHPEINTSIVFVPA-PFAPDAVYE- 90 (297)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHCTTCCEEEECCCG-GGHHHHHHH-
T ss_pred EEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCc--eECCEeeeCCHHHHhhcCCCCCEEEEecCH-HHHHHHHHH-
Confidence 4677799 999999999999889883 4567653111 1246553 47999987 5 9999999993 445544433
Q ss_pred HHhcCCCceEEEeccCCc-hhcHHHHHHHHhcCCe
Q 046427 268 AFFKMKKGVRIVNVARGG-VVDEEALVRALDSGII 301 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~-~vd~~aL~~aL~~g~i 301 (595)
..+ .+-.. +|..+.|= ..+++.+.++.++..+
T Consensus 91 a~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi 123 (297)
T 2yv2_A 91 AVD-AGIRL-VVVITEGIPVHDTMRFVNYARQKGA 123 (297)
T ss_dssp HHH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCC
Confidence 222 22221 44444431 2245677777766544
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=91.93 E-value=0.21 Score=49.87 Aligned_cols=64 Identities=25% Similarity=0.221 Sum_probs=48.2
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhcCC-CEEEEECCCCcHH---HHHHcCCccc--------CHHHhccccCEEEEeCC
Q 046427 192 GKTLAVMGF-GKVGTEVARRAKGLG-MNVIAHDPYAQAD---RARATGVGLV--------SFEEAISTADFISLHMP 255 (595)
Q Consensus 192 gktvGIIGl-G~IG~~vA~~l~~~G-~~V~~~d~~~~~~---~a~~~g~~~~--------~l~ell~~aD~V~l~~P 255 (595)
.|+|.|.|. |.||+.+++.|...| ++|.+.++..... .....+++.+ ++.++++.+|+|+.+.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 578999997 999999999999888 9999998875321 1223454321 36678889999998775
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.2 Score=53.04 Aligned_cols=66 Identities=17% Similarity=0.087 Sum_probs=51.5
Q ss_pred eecCCEEEEEeCCh----------HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCC
Q 046427 189 SLVGKTLAVMGFGK----------VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMP 255 (595)
Q Consensus 189 ~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~P 255 (595)
.+.|++|+|+|+-- =...+++.|...|.+|.+|||...... ...+..++ ++++++++||+|+++..
T Consensus 306 ~~~~~~v~vlGlafK~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~~~~ 382 (402)
T 1dlj_A 306 ESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE-SEDQSVLVNDLENFKKQANIIVTNRY 382 (402)
T ss_dssp CCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC-TTCCSEECCCHHHHHHHCSEEECSSC
T ss_pred CCCCCEEEEEeeeccCCCcccccChHHHHHHHHHHCCCEEEEECCCCChHH-HHcCCeecCCHHHHHhCCcEEEEecC
Confidence 58899999999853 567799999999999999999764321 11344433 68999999999999776
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.2 Score=50.76 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=70.7
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCCh----------
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTP---------- 258 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~---------- 258 (595)
++|++|.++|-.......++.+...|++|..+.-.. +...+.|.... ++.+.++++|+|++..|...
T Consensus 5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a 82 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQ--LDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFS 82 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTT--SSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSC
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccc--cccccccceeccchHHHHhcCCEEEeccccccCCcccccccc
Confidence 668899999999999999999999999998774211 00112233322 46778899999987554321
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.+...++++.++.++++.+|. +++ |..++.+++.+..+
T Consensus 83 ~~~~~~~~~~l~~~~~l~~i~----~g~-~~~d~~~~~~~~gi 120 (300)
T 2rir_A 83 NEEVVLKQDHLDRTPAHCVIF----SGI-SNAYLENIAAQAKR 120 (300)
T ss_dssp SSCEECCHHHHHTSCTTCEEE----ESS-CCHHHHHHHHHTTC
T ss_pred cCCccchHHHHhhcCCCCEEE----Eec-CCHHHHHHHHHCCC
Confidence 123347888899999988887 333 55565555555555
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.79 E-value=0.18 Score=50.39 Aligned_cols=64 Identities=23% Similarity=0.397 Sum_probs=46.7
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCc----HHHH------HHcCCccc--------CHHHhccccCEEEE
Q 046427 192 GKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQ----ADRA------RATGVGLV--------SFEEAISTADFISL 252 (595)
Q Consensus 192 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~----~~~a------~~~g~~~~--------~l~ell~~aD~V~l 252 (595)
.++|.|.|. |.||+.+++.|...|++|++.++... .+.+ ...+++.+ ++.++++.+|+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 468999996 99999999999999999999988642 1111 12354321 35677888898887
Q ss_pred eCC
Q 046427 253 HMP 255 (595)
Q Consensus 253 ~~P 255 (595)
+++
T Consensus 84 ~a~ 86 (308)
T 1qyc_A 84 TVG 86 (308)
T ss_dssp CCC
T ss_pred CCc
Confidence 775
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=91.77 E-value=0.16 Score=53.06 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=32.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|.+++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 115 ~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D 151 (353)
T 3h5n_A 115 KLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDND 151 (353)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence 5889999999999999999999998886 78888765
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.11 Score=51.12 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=44.2
Q ss_pred EEEEEeC-ChHHHHHHHHHhcC--CCEEEEECCCCcH-HHHHHcCCcc--------cCHHHhccccCEEEEeCC
Q 046427 194 TLAVMGF-GKVGTEVARRAKGL--GMNVIAHDPYAQA-DRARATGVGL--------VSFEEAISTADFISLHMP 255 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~~--G~~V~~~d~~~~~-~~a~~~g~~~--------~~l~ell~~aD~V~l~~P 255 (595)
+|.|.|. |.||+.+++.|... |++|++.++.... ......++.. .++.++++.+|+|+.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 3678886 99999999999987 9999999876532 2222334422 136678889999987665
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.13 Score=48.94 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=46.3
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc---------ccCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG---------LVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~---------~~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|.|.| .|.||+.+++.|...|++|++.++........ .+++ ..++.++++++|+|+.+.....
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~ 75 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG 75 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-CCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence 3688998 79999999999999999999999865321100 1221 1135567888999988876543
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.16 Score=50.68 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=46.4
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC-c---H-HHH------HHcCCccc--------CHHHhccccCEEE
Q 046427 192 GKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA-Q---A-DRA------RATGVGLV--------SFEEAISTADFIS 251 (595)
Q Consensus 192 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~---~-~~a------~~~g~~~~--------~l~ell~~aD~V~ 251 (595)
+++|.|.|. |.||+.+++.|...|++|++.++.. . . +.. ...+++.+ ++.++++.+|+|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 578999996 9999999999998899999988765 1 1 111 12354321 3566778888887
Q ss_pred EeCCC
Q 046427 252 LHMPL 256 (595)
Q Consensus 252 l~~Pl 256 (595)
.+++.
T Consensus 82 ~~a~~ 86 (307)
T 2gas_A 82 CAAGR 86 (307)
T ss_dssp ECSSS
T ss_pred ECCcc
Confidence 77663
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=0.18 Score=52.25 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=32.0
Q ss_pred cCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+++.|.| .|.||..+++.++..|.+|++.++..
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~ 197 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ 197 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999 79999999999999999999998764
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=91.62 E-value=0.22 Score=49.98 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=46.5
Q ss_pred CCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-------cCHHHhccccCEEEEeCCCC
Q 046427 192 GKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-------VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-------~~l~ell~~aD~V~l~~Plt 257 (595)
+++|.|.| .|.||+.+++.|...|.+|++.++...... .+ +++. .++.++++++|+|+-+....
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~-~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~~ 73 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN-DYEYRVSDYTLEDLINQLNDVDAVVHLAATR 73 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-------CCEEEECCCCHHHHHHHTTTCSEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC-ceEEEEccccHHHHHHhhcCCCEEEEccccC
Confidence 47899999 699999999999999999999988742221 11 3321 13667888999998776543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.51 E-value=0.25 Score=52.80 Aligned_cols=88 Identities=19% Similarity=0.181 Sum_probs=61.2
Q ss_pred ecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-CH------------------------HH
Q 046427 190 LVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-SF------------------------EE 242 (595)
Q Consensus 190 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-~l------------------------~e 242 (595)
-.|++|.|+|. |.||...++.++..|.+|++.++.. ..+.++++|...+ +. ++
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKL 298 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHH
Confidence 35889999998 9999999999999999999987654 3455667776421 11 11
Q ss_pred ---hc-cccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccC
Q 046427 243 ---AI-STADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 243 ---ll-~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
+. ...|+|+-++.. + . -...+..|+++..+++++.
T Consensus 299 v~~~~g~g~Dvvid~~G~-~----~-~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 299 VVEKAGREPDIVFEHTGR-V----T-FGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHHSSCCSEEEECSCH-H----H-HHHHHHHSCTTCEEEESCC
T ss_pred HHHHhCCCceEEEECCCc-h----H-HHHHHHHHhcCCEEEEEec
Confidence 11 247888877752 1 1 1345666888888888863
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.18 Score=51.96 Aligned_cols=45 Identities=33% Similarity=0.471 Sum_probs=36.2
Q ss_pred cCCEEEEEeCC-hHHHHHHHHHhcC-CCEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFG-KVGTEVARRAKGL-GMNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG-~IG~~vA~~l~~~-G~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|+++.|+|.| .||..+++.++.. |.+|++.|++. ..+.+++.|.
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~ 217 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA 217 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence 47899999999 9999999999988 99999998765 2334445553
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.14 Score=54.90 Aligned_cols=63 Identities=21% Similarity=0.165 Sum_probs=48.6
Q ss_pred cCCEEEEEeCCh----------HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCC
Q 046427 191 VGKTLAVMGFGK----------VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~P 255 (595)
.|++|+|+|+-- =...++++|++.|.+|.+|||...... -.+... .++++++++||+|++.-.
T Consensus 331 ~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~--~~~~~~~~~~~~~~~~aD~iv~~~~ 404 (432)
T 3pid_A 331 KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDE--FFNSRVVRDLNAFKQEADVIISNRM 404 (432)
T ss_dssp CCSSEEEECC-----------CHHHHHHHHHHHTTCCEEEECTTCCSSE--ETTEEECCCHHHHHHHCSEEECSSC
T ss_pred cCCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcCCEEEEECCCCChhh--cCCceEECCHHHHHhcCCEEEECCC
Confidence 589999999852 357799999999999999999875321 124333 389999999999998765
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.26 E-value=0.4 Score=49.81 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=37.3
Q ss_pred cCCEEEEEe-CChHHHHHHHHHhc-CCCEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMG-FGKVGTEVARRAKG-LGMNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIG-lG~IG~~vA~~l~~-~G~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|++|.|+| .|.+|...++.++. .|.+|++.++.. ..+.++++|.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa 218 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA 218 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC
Confidence 578999999 99999999999997 699999999865 3455666665
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=91.26 E-value=0.21 Score=51.03 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=31.8
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+++.|.|. |.||..+++.++..|.+|++.++..
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~ 180 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE 180 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4789999995 9999999999999999999998865
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.24 Score=50.41 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=48.3
Q ss_pred eecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCc--HHHHH---H-------cCCccc--------CHHHhcccc
Q 046427 189 SLVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQ--ADRAR---A-------TGVGLV--------SFEEAISTA 247 (595)
Q Consensus 189 ~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~---~-------~g~~~~--------~l~ell~~a 247 (595)
.+.+++|.|.| .|.||+.+++.|...|.+|++.++... ..... . .+++.+ +++++++++
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 101 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV 101 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence 35689999999 599999999999999999999988652 11111 1 233211 256778888
Q ss_pred CEEEEeCCC
Q 046427 248 DFISLHMPL 256 (595)
Q Consensus 248 D~V~l~~Pl 256 (595)
|+|+-+...
T Consensus 102 d~Vih~A~~ 110 (351)
T 3ruf_A 102 DHVLHQAAL 110 (351)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCcc
Confidence 888776653
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.24 Score=51.20 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=25.6
Q ss_pred EEEEEeCChHHHHHHHHHhcC-CCEEEEECCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGL-GMNVIAHDPY 224 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~ 224 (595)
+|||+|+|+||+.+.|.+... .++|.+.+..
T Consensus 3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~ 34 (330)
T 1gad_O 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL 34 (330)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred EEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 799999999999999998754 5788776443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 595 | ||||
| d1ygya1 | 184 | c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase | 6e-45 | |
| d1gdha1 | 191 | c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp | 1e-43 | |
| d2naca1 | 188 | c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom | 6e-41 | |
| d1sc6a1 | 188 | c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase | 8e-39 | |
| d1mx3a1 | 193 | c.2.1.4 (A:126-318) Transcription corepressor CtbP | 1e-34 | |
| d1j4aa1 | 197 | c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto | 3e-29 | |
| d1ygya2 | 130 | c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy | 1e-25 | |
| d1qp8a1 | 181 | c.2.1.4 (A:83-263) Putative formate dehydrogenase | 3e-25 | |
| d1dxya1 | 199 | c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro | 2e-23 | |
| d1gdha2 | 129 | c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog | 9e-23 | |
| d1mx3a2 | 133 | c.23.12.1 (A:27-125,A:319-352) Transcription corep | 3e-21 | |
| d1sc6a2 | 132 | c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh | 2e-20 | |
| d1dxya2 | 131 | c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa | 3e-20 | |
| d1j4aa2 | 134 | c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen | 6e-19 | |
| d2naca2 | 186 | c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas | 9e-18 | |
| d1ygya4 | 135 | d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrog | 1e-17 | |
| d1qp8a2 | 121 | c.23.12.1 (A:1-82,A:264-302) Putative formate dehy | 1e-13 | |
| d1ygya3 | 78 | d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena | 7e-13 | |
| d1sc6a3 | 84 | d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena | 8e-12 | |
| d1li4a1 | 163 | c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas | 9e-12 | |
| d1v8ba1 | 163 | c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolas | 5e-09 | |
| d1leha1 | 230 | c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillu | 2e-04 | |
| d1hwxa1 | 293 | c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow ( | 2e-04 | |
| d1pjqa1 | 113 | c.2.1.11 (A:1-113) Siroheme synthase CysG, domain | 3e-04 | |
| d1v9la1 | 242 | c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrob | 7e-04 | |
| d1c1da1 | 201 | c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R | 0.002 |
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 155 bits (392), Expect = 6e-45
Identities = 86/185 (46%), Positives = 116/185 (62%), Gaps = 1/185 (0%)
Query: 149 NTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVA 208
N +AAEH +ALL A +R I ADAS++ W+R+ + G + GKT+ V+G G++G VA
Sbjct: 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVA 60
Query: 209 RRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEA 268
+R G V+A+DPY RA G+ L+S ++ ++ ADFIS+H+P TP T+ + + EA
Sbjct: 61 QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120
Query: 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTV 328
K K GV IVN ARGG+VDE AL A+ G + A LDVF EP DS L V V
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVV 179
Query: 329 TPHLG 333
TPHLG
Sbjct: 180 TPHLG 184
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Score = 152 bits (384), Expect = 1e-43
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 6/191 (3%)
Query: 150 TIAAAEHGIALLTAMARNIAQADASVKAGKWQ---RNKYVGVSLVGKTLAVMGFGKVGTE 206
T+A AE + LL AR + + ++ W + VG L KTL + GFG +G
Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 61
Query: 207 VARRAKGLGMNVIAHDPY--AQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264
+A+RA+G M++ D + + +D A S + +S + F SL+ P TP T F
Sbjct: 62 LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 121
Query: 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHE 324
N + +G +VN ARG +VD E +V AL++G ++ A DVF EP +
Sbjct: 122 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPN-INEGYYDLP 180
Query: 325 NVTVTPHLGAS 335
N + PH+G++
Sbjct: 181 NTFLFPHIGSA 191
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Score = 144 bits (364), Expect = 6e-41
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 4/187 (2%)
Query: 151 IAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYV--GVSLVGKTLAVMGFGKVGTEVA 208
I+ AEH + ++ ++ RN + + G W V L + + G++G V
Sbjct: 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVL 60
Query: 209 RRAKGLGMNVIAHDPYAQADRARATG--VGLVSFEEAISTADFISLHMPLTPATSKMFND 266
RR +++ D + + + E+ D ++L+ PL P T M ND
Sbjct: 61 RRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 120
Query: 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENV 326
E K+G IVN ARG + D +A+ RAL+SG ++ A DV+ +P KD
Sbjct: 121 ETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN 180
Query: 327 TVTPHLG 333
+TPH+
Sbjct: 181 GMTPHIS 187
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 138 bits (349), Expect = 8e-39
Identities = 63/189 (33%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
Query: 149 NTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVA 208
NT + AE I L + R + +A+A G + GK L ++G+G +GT++
Sbjct: 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 60
Query: 209 RRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEA 268
A+ LGM V +D + AT V + ++ +D +SLH+P P+T M +
Sbjct: 61 ILAESLGMYVYFYDIENKLPLGNATQV--QHLSDLLNMSDVVSLHVPENPSTKNMMGAKE 118
Query: 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHE 324
MK G ++N +RG VVD AL AL S ++ AA+DVF EP S L +
Sbjct: 119 ISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFD 178
Query: 325 NVTVTPHLG 333
NV +TPH+G
Sbjct: 179 NVLLTPHIG 187
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 127 bits (320), Expect = 1e-34
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 9/187 (4%)
Query: 154 AEHGIALLTAMARNIAQADASVKAGKWQRNK-------YVGVSLVGKTLAVMGFGKVGTE 206
A+ + + + R +++ G ++ + G+TL ++G G+VG
Sbjct: 4 ADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQA 63
Query: 207 VARRAKGLGMNVIAHDPYAQADRARATG-VGLVSFEEAISTADFISLHMPLTPATSKMFN 265
VA RAK G NV+ +DPY RA G + + ++ + +D ++LH L + N
Sbjct: 64 VALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN 123
Query: 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP-PAKDSKLVLHE 324
D +M++G +VN ARGG+VDE+AL +AL G I AALDV EP L
Sbjct: 124 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP 183
Query: 325 NVTVTPH 331
N+ TPH
Sbjct: 184 NLICTPH 190
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Score = 112 bits (280), Expect = 3e-29
Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 152 AAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRA 211
A AEH + R D V + +G + + + V+G G +G +
Sbjct: 3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIM 62
Query: 212 KGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFK 271
+G G VI +D + G + S ++ AD ISLH+P PA M NDE+ K
Sbjct: 63 EGFGAKVITYDIFRN-PELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 121
Query: 272 MKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP-------------AKDS 318
MK+ V IVNV+RG +VD +A++R LDSG I A+DV+ E A+ +
Sbjct: 122 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 181
Query: 319 KLVLHENVTVTPH 331
L+ NV VTP
Sbjct: 182 DLIARPNVLVTPK 194
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 100 bits (249), Expect = 1e-25
Identities = 50/129 (38%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFE 111
S P VL+A+KL + + L + V ++L + DAL+VRS T V EV
Sbjct: 1 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLA 60
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+ A +LK+V RAGVG+DNVD+ AAT G LVVNAPT+ + A A+ A + +A A
Sbjct: 61 A-APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALA 119
Query: 172 DASVKAGKW 180
V
Sbjct: 120 GEFVPDAVN 128
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 100 bits (250), Expect = 3e-25
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 8/187 (4%)
Query: 148 ANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEV 207
A+ +A E +ALL A + I Q +K G + R+ + + G+ +AV+G G++GT V
Sbjct: 1 ADAVA--EFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLI-QGEKVAVLGLGEIGTRV 57
Query: 208 ARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267
+ LG V + R T S EEA+ A +PL T + +
Sbjct: 58 GKILAALGAQVRGFSRTPKEGPWRFT----NSLEEALREARAAVCALPLNKHTRGLVKYQ 113
Query: 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFT-EEPPAKDSKLVLHENV 326
M + VNV R V+D + ++R L A DV+ AKD++ NV
Sbjct: 114 HLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173
Query: 327 TVTPHLG 333
TP +
Sbjct: 174 VATPWVA 180
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 96.1 bits (237), Expect = 2e-23
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 16/198 (8%)
Query: 150 TIAAAEHGIALLTAMARNIAQADASVKAGKWQR-NKYVGVSLVGKTLAVMGFGKVGTEVA 208
A AE + + RN+ + A ++AG +++ ++G L +T+ VMG G +G
Sbjct: 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAI 61
Query: 209 RRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEA 268
+ KG G VIA+DPY VS E+ +D I LH+P + + N+ A
Sbjct: 62 KLFKGFGAKVIAYDPYPMKGDHPDFDY--VSLEDLFKQSDVIDLHVPGIEQNTHIINEAA 119
Query: 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD----------- 317
F MK G ++N AR ++D +A++ L SG ++ +D + E
Sbjct: 120 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDP 179
Query: 318 --SKLVLHENVTVTPHLG 333
+L+ NV ++PH+
Sbjct: 180 LWDELLGMPNVVLSPHIA 197
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Score = 92.0 bits (228), Expect = 9e-23
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREV 109
K +L+ L EA + + +V + ++ +E+ DAL++ K +EV
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
+ +K + +G D++DL A G V NAP T A + +
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFG 120
Query: 170 QADAS 174
AD S
Sbjct: 121 GADMS 125
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 87.3 bits (216), Expect = 3e-21
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Query: 54 PTVLVAEKL-GEAGLDVLKNFANVDCSYNLSPEELCTKI-SLCDALIVRSGTKVTREVFE 111
P V + + + +LK+ A V S +E+ K+ + ++ +TRE E
Sbjct: 2 PLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLE 61
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
L+++ R G G DN+D+ +A + G V N P A+ + + I + AR I +A
Sbjct: 62 K-FKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA 119
Query: 172 DASVKAGKWQ 181
+
Sbjct: 120 ITGRIPDSLK 129
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 85.5 bits (211), Expect = 2e-20
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTRE 108
K L+ E + + L+ L+ + + L E+L I + +RS T +T +
Sbjct: 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTED 62
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNI 168
V ++ +L +G +G + VDL AA + G V NAP ++T A E+ + + I
Sbjct: 63 VINAA-EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEV--AGKLI 119
Query: 169 AQADASVKAGKW 180
+D
Sbjct: 120 KYSDNGSTLSAV 131
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 84.7 bits (209), Expect = 3e-20
Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 3/129 (2%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN--LSPEELCTKISLCDALIVRSGTKVTREVF 110
K A Y+ E D + T VF
Sbjct: 2 KIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVF 61
Query: 111 ES-SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
E A +K + VG DN+D++A ++G + N P A L + +
Sbjct: 62 EKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLT 121
Query: 170 QADASVKAG 178
+ + S +
Sbjct: 122 KGETSTEVT 130
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Score = 81.1 bits (200), Expect = 6e-19
Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 9/122 (7%)
Query: 60 EKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAG-RLK 118
++ +A DV V+ + L E D ++V E ++ A +
Sbjct: 17 KEWEDAHKDV-----EVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGIT 71
Query: 119 VVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAG 178
+ VG+DN+D++ A E G + N P + H + + A + K
Sbjct: 72 KMSLRNVGVDNIDMAKAKELGFQITNVPVYSY---TTHAVRNMVVKAFDNNLELVEGKEA 128
Query: 179 KW 180
+
Sbjct: 129 ET 130
|
| >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Score = 79.2 bits (195), Expect = 9e-18
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 11/115 (9%)
Query: 76 VDCSYNLSPEELCTKISLCDALIVRS--GTKVTREVFESSAGRLKVVGRAGVGIDNVDLS 133
V + ++ D +I + +T E + LK+ AG+G D+VDL
Sbjct: 72 VTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAK-NLKLALTAGIGSDHVDLQ 130
Query: 134 AATEHGCLVVNAPTANTIAAAEH--------GIALLTAMARNIAQADASVKAGKW 180
+A + V N+ I R I V+ G
Sbjct: 131 SAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185
|
| >d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Serine metabolism enzymes domain family: SerA intervening domain-like domain: D-3-phosphoglycerate dehydrogenase SerA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 77.6 bits (191), Expect = 1e-17
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 372 EVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGII 431
V E+AP++ L KLG LA L S+ V + +LR +G+
Sbjct: 3 VVNEEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRGEL--AAEEVEVLRLSALRGLF 58
Query: 432 EPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDI 491
+ V VNA +A +RG+ + + + ++ V +D
Sbjct: 59 SAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSVVDVRAVG------------ADG 106
Query: 492 GDIRVEGRV--KDGKPHLTKVGSFGVDV 517
+ V G + + ++ D+
Sbjct: 107 SVVTVSGTLYGPQLSQKIVQINGRHFDL 134
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 65.4 bits (159), Expect = 1e-13
Identities = 21/160 (13%), Positives = 42/160 (26%), Gaps = 41/160 (25%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAG 115
+ V +L + L+ + + +L E +++T E
Sbjct: 3 LYVNFELPPEAEEELRKYFKIVRGGDLGNVEAAL------------VSRITAEELAK-MP 49
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
RLK + G+D++ + H V +N ++ R
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPPHV-TVAGNAGSNGYGNERVWRQMVMEAVR--------- 99
Query: 176 KAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLG 215
L G +A+R +G
Sbjct: 100 ------------------NLITYATGGRPRNIAKREDYIG 121
|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 62.1 bits (151), Expect = 7e-13
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 520 EGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLK 579
+G ++ VD+PG +GK+G+LLG VN+ + A A + + +D++ +V
Sbjct: 2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRT 61
Query: 580 KIGETPAIEEFVFLKL 595
I + + L
Sbjct: 62 AIAAAVDAYKLEVVDL 77
|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Escherichia coli [TaxId: 562]
Score = 59.3 bits (144), Expect = 8e-12
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 516 DVSLE---GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572
+VSL G ++ ++PG++ + + + VN+ + A V+ I DE+
Sbjct: 3 EVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADED 62
Query: 573 PSREVLKKIGETPAI 587
+ + L+ + P
Sbjct: 63 VAEKALQAMKAIPGT 77
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.5 bits (149), Expect = 9e-12
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 4/127 (3%)
Query: 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAIST 246
V + GK V G+G VG A+ +G G VI + A V+ +
Sbjct: 19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT---TMDE 75
Query: 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV-ARGGVVDEEALVRALDSGIISQAA 305
A T + F +MK + N+ +D + L + +
Sbjct: 76 ACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQ 135
Query: 306 LDVFTEE 312
+D + +
Sbjct: 136 VDRYRLK 142
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Score = 53.3 bits (128), Expect = 5e-09
Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 7/151 (4%)
Query: 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAIS 245
+ GK + + G+G VG A KGLG V + A +A G +V+ +E +
Sbjct: 18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVD 77
Query: 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAA 305
DF + E KMK + N+ + + I
Sbjct: 78 KGDFFITCTGNVD----VIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK 133
Query: 306 LDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
V P + +VL + +LG +T
Sbjct: 134 PQVDRITLPNGNKIIVLARGRLL--NLGCAT 162
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Score = 40.8 bits (95), Expect = 2e-04
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 180 WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLV 238
+ + SL G ++V G G V + ++ G ++ D A A A
Sbjct: 27 AAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADA 86
Query: 239 SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
AI + P A + ND ++K V I A + D
Sbjct: 87 VAPNAIYGVT-CDIFAPC--ALGAVLNDFTIPQLKAKV-IAGSADNQLKDPRH 135
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.2 bits (96), Expect = 2e-04
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 171 ADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD 222
+ ++ + + KT AV GFG VG R G +A
Sbjct: 15 IENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVG 66
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Score = 38.5 bits (89), Expect = 3e-04
Identities = 14/96 (14%), Positives = 22/96 (22%), Gaps = 1/96 (1%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD-RARATGVGLVSFEEAIST 246
L + ++G G V AR G + + A L E
Sbjct: 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE 67
Query: 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282
S + + N + NV
Sbjct: 68 TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Score = 39.4 bits (91), Expect = 7e-04
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 1/118 (0%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEA 243
K + + GKT+A+ G G VG A + +G VIA + + +
Sbjct: 23 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNK 82
Query: 244 ISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301
T + + N +A FK+ + + A V+ + ++
Sbjct: 83 GLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPA-AIENVIRGDNAGLVKARLVV 139
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Score = 37.4 bits (86), Expect = 0.002
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVI-AHDPYAQADRARATGVGLVSFEEAISTA 247
SL G T+ V G G VG +A A G ++ A + A A G V+ E+ +ST
Sbjct: 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTP 83
Query: 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
+ P + + A + DE A
Sbjct: 84 CDVF-----APCAMGGVITTEVARTLDCSVVAGAANNVIADEAA 122
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 595 | |||
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 100.0 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 100.0 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 100.0 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 100.0 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 100.0 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 100.0 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 100.0 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 100.0 | |
| d1ygya2 | 130 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.95 | |
| d1ygya4 | 135 | D-3-phosphoglycerate dehydrogenase SerA {Mycobacte | 99.93 | |
| d1sc6a2 | 132 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.89 | |
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.89 | |
| d1qp8a2 | 121 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.84 | |
| d1dxya2 | 131 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.84 | |
| d1mx3a2 | 133 | Transcription corepressor CtbP {Human (Homo sapien | 99.83 | |
| d2naca2 | 186 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.8 | |
| d1j4aa2 | 134 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.75 | |
| d1ygya3 | 78 | Phosphoglycerate dehydrogenase, regulatory (C-term | 99.67 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 99.63 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.49 | |
| d1sc6a3 | 84 | Phosphoglycerate dehydrogenase, regulatory (C-term | 99.42 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.42 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 99.37 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.36 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.26 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.08 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.96 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 98.89 | |
| d2iafa1 | 145 | L-serine dehydratase SdhL, N-terminal domain {Legi | 98.75 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 98.75 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.73 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.66 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.57 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 98.48 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 98.42 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.38 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.37 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.36 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.34 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.17 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.14 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.08 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 98.07 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.0 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.98 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.8 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.8 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.76 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.74 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.74 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.7 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.66 | |
| d2pc6a2 | 77 | Acetolactate synthase small subunit, IlvH {Nitroso | 97.64 | |
| d2f1fa1 | 76 | Acetolactate synthase small subunit, IlvH {Escheri | 97.64 | |
| d2fgca2 | 78 | Acetolactate synthase small subunit, IlvH {Thermot | 97.6 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.59 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.56 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.49 | |
| d1y7pa2 | 77 | Hypothetical protein AF1403, N-terminal domain {Ar | 97.49 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.41 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.17 | |
| d2f06a1 | 71 | Hypothetical protein BT0572 {Bacteroides thetaiota | 97.14 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.13 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.09 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.08 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 97.01 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.97 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 96.96 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.91 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.9 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 96.88 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.87 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 96.84 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 96.81 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.78 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.77 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 96.76 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 96.75 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 96.66 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.66 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.66 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 96.62 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.61 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.6 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 96.58 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.57 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.53 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.53 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.52 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.51 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.51 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 96.5 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.46 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.46 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.45 | |
| d1u8sa2 | 93 | putative transcriptional repressor VC2159 {Vibrio | 96.41 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 96.35 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.27 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.27 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.25 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.25 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.21 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.21 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.21 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.08 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.05 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.01 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.99 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 95.98 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.92 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 95.9 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.87 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.57 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 95.56 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.56 | |
| d2qmwa2 | 80 | Prephenate dehydratase C-terminal domain {Staphylo | 95.51 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.49 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.46 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 95.43 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.42 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.4 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 95.26 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.2 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 95.11 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.06 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.06 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.03 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.97 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.97 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 94.96 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 94.95 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 94.77 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 94.54 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 94.51 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 94.46 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.21 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 94.12 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 94.07 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.9 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.89 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 93.67 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 93.63 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 93.44 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 93.39 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 93.37 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.35 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.26 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 93.22 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.15 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 92.92 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 92.5 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.43 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 92.37 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 92.28 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 92.19 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 92.18 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 92.0 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 91.83 | |
| d1phza1 | 97 | Phenylalanine hydroxylase N-terminal domain {Rat ( | 91.8 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.79 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 91.52 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 91.41 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 91.28 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 91.28 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 91.24 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 90.88 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 90.81 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 90.8 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 90.62 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 90.54 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 90.37 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 90.33 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 90.27 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 90.21 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.99 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 89.91 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 89.89 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 89.68 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 89.47 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 89.39 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 89.36 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 89.26 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.24 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.12 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 88.96 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 88.91 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 88.89 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 88.85 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.74 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 88.68 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 88.66 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 88.51 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 88.51 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 88.26 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 88.19 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 88.18 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 88.13 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 87.82 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 87.78 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 87.71 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 87.71 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 87.69 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 87.55 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 87.5 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 87.34 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 87.27 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 87.26 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 87.24 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 87.23 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 87.21 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 87.19 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 87.14 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 87.12 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 86.93 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 86.78 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 86.73 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 86.71 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 86.7 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 86.58 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 86.34 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 86.2 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 85.81 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 85.8 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 85.52 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 85.51 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 85.48 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 85.46 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 85.32 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 85.1 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 84.58 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 84.23 | |
| d1pjca2 | 193 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 84.19 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 84.0 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 83.74 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 83.69 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 83.66 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 83.59 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 83.4 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 83.29 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 82.98 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 82.97 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 82.73 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 82.39 | |
| d1tuga1 | 310 | Aspartate carbamoyltransferase catalytic subunit { | 82.35 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 82.34 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 82.33 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 82.3 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 82.13 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 82.09 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.44 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 81.32 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 81.08 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.96 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 80.86 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 80.86 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 80.83 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 80.79 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 80.55 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.5 |
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.3e-50 Score=387.56 Aligned_cols=184 Identities=47% Similarity=0.764 Sum_probs=177.5
Q ss_pred CchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH
Q 046427 149 NTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD 228 (595)
Q Consensus 149 ~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~ 228 (595)
|+.+||||++++||++.|+++++++.+++|.|.+..+.+.++.||++||+|+|+||+.+|+++++|||+|++||++....
T Consensus 1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~ 80 (184)
T d1ygya1 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA 80 (184)
T ss_dssp SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence 67899999999999999999999999999999987788999999999999999999999999999999999999998777
Q ss_pred HHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEec
Q 046427 229 RARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDV 308 (595)
Q Consensus 229 ~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv 308 (595)
.....+++..+++|++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+||+|||
T Consensus 81 ~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV 160 (184)
T d1ygya1 81 RAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV 160 (184)
T ss_dssp HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESS
T ss_pred HHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeC
Confidence 77778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccCCcEEEcCCCC
Q 046427 309 FTEEPPAKDSKLVLHENVTVTPHLG 333 (595)
Q Consensus 309 ~~~EP~~~~~~L~~~~nvilTPHi~ 333 (595)
|++||++ ++|||++||+++|||+|
T Consensus 161 ~~~EP~~-~~~l~~~~nviiTPHIG 184 (184)
T d1ygya1 161 FATEPCT-DSPLFELAQVVVTPHLG 184 (184)
T ss_dssp CSSSSCS-CCGGGGCTTEEECSSCS
T ss_pred CCCCCCC-CchHhcCCCEEECCCCC
Confidence 9999985 89999999999999997
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=100.00 E-value=3e-48 Score=375.13 Aligned_cols=184 Identities=32% Similarity=0.492 Sum_probs=171.7
Q ss_pred hHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc-------cceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECC
Q 046427 151 IAAAEHGIALLTAMARNIAQADASVKAGKWQRNK-------YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDP 223 (595)
Q Consensus 151 ~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~-------~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~ 223 (595)
++||||++++||+++|+++..++.+|+|.|.++. ..|.+|+||||||||+|+||+.+|+++++|||+|++|||
T Consensus 1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~ 80 (193)
T d1mx3a1 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP 80 (193)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence 5899999999999999999999999999998642 457899999999999999999999999999999999999
Q ss_pred CCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCee
Q 046427 224 YAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIIS 302 (595)
Q Consensus 224 ~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ 302 (595)
+.........++.. .+|++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~ 160 (193)
T d1mx3a1 81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR 160 (193)
T ss_dssp TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence 87655556667754 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCC-CCcccccCCcEEEcCCCCC
Q 046427 303 QAALDVFTEEPPA-KDSKLVLHENVTVTPHLGA 334 (595)
Q Consensus 303 ga~lDv~~~EP~~-~~~~L~~~~nvilTPHi~~ 334 (595)
||++|||+.||++ .++||+++|||++|||+|+
T Consensus 161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~ 193 (193)
T d1mx3a1 161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 193 (193)
T ss_dssp EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence 9999999999986 5789999999999999985
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=100.00 E-value=5.7e-48 Score=372.66 Aligned_cols=185 Identities=32% Similarity=0.524 Sum_probs=169.6
Q ss_pred chHHHHHHHHHHHHHHHchHHHHHHHHcCccccc---ccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc
Q 046427 150 TIAAAEHGIALLTAMARNIAQADASVKAGKWQRN---KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ 226 (595)
Q Consensus 150 ~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~ 226 (595)
+.+||||+++|||+++|+++++++.+|+|.|..+ .+.|.+++|||+||||+|+||+.+|+++++|||+|++||++..
T Consensus 2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~ 81 (191)
T d1gdha1 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 81 (191)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence 5789999999999999999999999999999643 3568899999999999999999999999999999999999763
Q ss_pred -HHHHHH-cCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEE
Q 046427 227 -ADRARA-TGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQA 304 (595)
Q Consensus 227 -~~~a~~-~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga 304 (595)
...... .+....++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||++||+++|++|+++||
T Consensus 82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a 161 (191)
T d1gdha1 82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA 161 (191)
T ss_dssp CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence 222223 334456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCcccccCCcEEEcCCCCCC
Q 046427 305 ALDVFTEEPPAKDSKLVLHENVTVTPHLGAS 335 (595)
Q Consensus 305 ~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~ 335 (595)
+||||+.||+ .++|||++||+++|||+|++
T Consensus 162 ~lDV~~~EP~-~~~~l~~~~nvi~TPHiasa 191 (191)
T d1gdha1 162 GFDVFAGEPN-INEGYYDLPNTFLFPHIGSA 191 (191)
T ss_dssp EESCCTTTTS-CCTTGGGCTTEEECSSCTTC
T ss_pred EEECCCCCCC-CCchHHcCCCEEECCccccC
Confidence 9999999995 68999999999999999975
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=100.00 E-value=6.4e-47 Score=366.70 Aligned_cols=183 Identities=34% Similarity=0.477 Sum_probs=169.5
Q ss_pred hHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHH
Q 046427 151 IAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA 230 (595)
Q Consensus 151 ~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a 230 (595)
++||||+++++|++.|+++..++.+++|.|......|.+|+||||||||+|+||+.+|+++++|||+|++||++.....
T Consensus 2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~- 80 (197)
T d1j4aa1 2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL- 80 (197)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-
T ss_pred CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCccccccc-
Confidence 6899999999999999999999999999987766789999999999999999999999999999999999999875443
Q ss_pred HHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCC
Q 046427 231 RATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFT 310 (595)
Q Consensus 231 ~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~ 310 (595)
...++...++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+++||+||||+
T Consensus 81 ~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~ 160 (197)
T d1j4aa1 81 EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE 160 (197)
T ss_dssp HHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred ccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccc
Confidence 34466667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-------------CCCCcccccCCcEEEcCCCCC
Q 046427 311 EEP-------------PAKDSKLVLHENVTVTPHLGA 334 (595)
Q Consensus 311 ~EP-------------~~~~~~L~~~~nvilTPHi~~ 334 (595)
.|| ++.++|||.+|||++|||+|+
T Consensus 161 ~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~ 197 (197)
T d1j4aa1 161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF 197 (197)
T ss_dssp TCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred cCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence 995 334567999999999999985
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=100.00 E-value=1.3e-46 Score=362.50 Aligned_cols=184 Identities=27% Similarity=0.431 Sum_probs=170.8
Q ss_pred hHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc--cceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cH
Q 046427 151 IAAAEHGIALLTAMARNIAQADASVKAGKWQRNK--YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QA 227 (595)
Q Consensus 151 ~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~ 227 (595)
.+||||+++++|+++|++.+++..+++|+|.+.. ..+.++.|+++||||+|+||+.+|+++++|||+|.+||++. ..
T Consensus 1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~ 80 (188)
T d2naca1 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE 80 (188)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCH
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccc
Confidence 4799999999999999999999999999997642 24778999999999999999999999999999999999876 44
Q ss_pred HHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEE
Q 046427 228 DRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAAL 306 (595)
Q Consensus 228 ~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~l 306 (595)
......++. ..++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+|
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~l 160 (188)
T d2naca1 81 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAG 160 (188)
T ss_dssp HHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEE
T ss_pred cccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEE
Confidence 444555554 4589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcccccCCcEEEcCCCCC
Q 046427 307 DVFTEEPPAKDSKLVLHENVTVTPHLGA 334 (595)
Q Consensus 307 Dv~~~EP~~~~~~L~~~~nvilTPHi~~ 334 (595)
|||++||++.++|||++||+++|||+||
T Consensus 161 DV~~~EP~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d2naca1 161 DVWFPQPAPKDHPWRTMPYNGMTPHISG 188 (188)
T ss_dssp SCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred eCCCCCCCCCCChHHcCCCeEEccccCc
Confidence 9999999999999999999999999986
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=100.00 E-value=2.1e-47 Score=371.24 Aligned_cols=184 Identities=29% Similarity=0.496 Sum_probs=168.5
Q ss_pred chHHHHHHHHHHHHHHHchHHHHHHHHcCccccc-ccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH
Q 046427 150 TIAAAEHGIALLTAMARNIAQADASVKAGKWQRN-KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD 228 (595)
Q Consensus 150 ~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~ 228 (595)
.++||||++++||++.|+++.+++.+++|.|.+. .+.|.+|.||||||||+|+||+.+|+++++|||+|++|||+....
T Consensus 2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~ 81 (199)
T d1dxya1 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG 81 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchh
Confidence 4789999999999999999999999999999864 457899999999999999999999999999999999999976432
Q ss_pred HHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEec
Q 046427 229 RARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDV 308 (595)
Q Consensus 229 ~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv 308 (595)
....+...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+|||
T Consensus 82 --~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV 159 (199)
T d1dxya1 82 --DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDT 159 (199)
T ss_dssp --CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESS
T ss_pred --hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccc
Confidence 223455679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-------------CCcccccCCcEEEcCCCCCC
Q 046427 309 FTEEPPA-------------KDSKLVLHENVTVTPHLGAS 335 (595)
Q Consensus 309 ~~~EP~~-------------~~~~L~~~~nvilTPHi~~~ 335 (595)
|++||++ ..++|+.+|||++|||+||+
T Consensus 160 ~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy 199 (199)
T d1dxya1 160 YEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY 199 (199)
T ss_dssp CTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred cCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence 9999862 23578889999999999986
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-46 Score=359.47 Aligned_cols=184 Identities=33% Similarity=0.470 Sum_probs=159.8
Q ss_pred CchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH
Q 046427 149 NTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD 228 (595)
Q Consensus 149 ~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~ 228 (595)
|+++||||+++++|++.|+++.++..+++|.|.+....+.++.|++|||||+|+||+.+|+++++|||+|++||++....
T Consensus 1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~ 80 (188)
T d1sc6a1 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP 80 (188)
T ss_dssp THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch
Confidence 78999999999999999999999999999999987777889999999999999999999999999999999999875422
Q ss_pred HHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEec
Q 046427 229 RARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDV 308 (595)
Q Consensus 229 ~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv 308 (595)
. .......++++++++||+|++|+|+|++|+++|+++.|++||++++|||+|||++||++||+++|++|++.||+|||
T Consensus 81 ~--~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV 158 (188)
T d1sc6a1 81 L--GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV 158 (188)
T ss_dssp C--TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC
T ss_pred h--hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEec
Confidence 1 12223458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC----CCcccccCCcEEEcCCCCC
Q 046427 309 FTEEPPA----KDSKLVLHENVTVTPHLGA 334 (595)
Q Consensus 309 ~~~EP~~----~~~~L~~~~nvilTPHi~~ 334 (595)
|++||.. ..+||+++|||++|||+||
T Consensus 159 ~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d1sc6a1 159 FPTEPATNSDPFTSPLAEFDNVLLTPHIGG 188 (188)
T ss_dssp ---------CTTTGGGTTCTTEEEECCCSC
T ss_pred CCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence 9999973 4568999999999999996
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=3.6e-45 Score=350.05 Aligned_cols=180 Identities=28% Similarity=0.320 Sum_probs=164.2
Q ss_pred chHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH
Q 046427 150 TIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR 229 (595)
Q Consensus 150 ~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~ 229 (595)
+++||||+++++|+++|++..+++.+++|+|.+... ..+|.||||||||+|+||+.+|+++++|||+|++||++....
T Consensus 1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~-~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~- 78 (181)
T d1qp8a1 1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG- 78 (181)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSC-CCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS-
T ss_pred CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCC-CCcccCceEEEeccccccccceeeeecccccccccccccccc-
Confidence 478999999999999999999999999999987543 347999999999999999999999999999999999976321
Q ss_pred HHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecC
Q 046427 230 ARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVF 309 (595)
Q Consensus 230 a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~ 309 (595)
......++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|+++|+++|++|++.||++|||
T Consensus 79 ---~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~ 155 (181)
T d1qp8a1 79 ---PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 155 (181)
T ss_dssp ---SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred ---ceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecC
Confidence 11123489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCcccccCCcEEEcCCCCC
Q 046427 310 TEE-PPAKDSKLVLHENVTVTPHLGA 334 (595)
Q Consensus 310 ~~E-P~~~~~~L~~~~nvilTPHi~~ 334 (595)
+.| |++.++||+++|||++|||+||
T Consensus 156 ~~e~p~~~~~~l~~~~nvi~TPHiaG 181 (181)
T d1qp8a1 156 WGRNDFAKDAEFFSLPNVVATPWVAG 181 (181)
T ss_dssp TTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred CCCCCCCCCChHHcCCCEEeccccCc
Confidence 755 5677899999999999999986
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=1.3e-28 Score=222.42 Aligned_cols=129 Identities=38% Similarity=0.477 Sum_probs=122.1
Q ss_pred CCCeEEEecCCChhHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccC
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVD 131 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD 131 (595)
+|||||+++.+++..++.|++.+++.+....+++|+.+.++++|++++++.+++++++++++ |+||+|+++|+||||||
T Consensus 1 sMpkvli~~~~~~~~~~~L~~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~ID 79 (130)
T d1ygya2 1 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARAGVGLDNVD 79 (130)
T ss_dssp CCCEEEECSSCCGGGGTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEESSSCCTTBC
T ss_pred CCCEEEEECCCCHHHHHHHhCCcEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhhc-ccceEEeeecccccchh
Confidence 58999999999999999999988998888888999999999999999998889999999997 69999999999999999
Q ss_pred hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccc
Q 046427 132 LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQ 181 (595)
Q Consensus 132 ~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~ 181 (595)
+++|+++||.|+|+||+++.+||||+++|||+++|++..+++.+|+|+|.
T Consensus 80 l~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~ 129 (130)
T d1ygya2 80 VDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV 129 (130)
T ss_dssp HHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred HHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence 99999999999999999999999999999999999999988888888874
|
| >d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Serine metabolism enzymes domain family: SerA intervening domain-like domain: D-3-phosphoglycerate dehydrogenase SerA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=4.9e-26 Score=206.42 Aligned_cols=131 Identities=21% Similarity=0.263 Sum_probs=112.8
Q ss_pred hhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhC
Q 046427 372 EVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQR 451 (595)
Q Consensus 372 ~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~ 451 (595)
++.+.++||+.||++||++++||+++ .+++++|+|+|+++ .++..+++.++++|+|.++.++++|++||+.+|+|+
T Consensus 3 ~~~~~l~Pyl~LaekLG~~~~ql~~~--~~~~i~I~~~G~~a--~~~~~~lt~a~l~G~L~~~~~~~VN~VNA~~iAker 78 (135)
T d1ygya4 3 VVNEEVAPWLDLVRKLGVLAGVLSDE--LPVSLSVQVRGELA--AEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAER 78 (135)
T ss_dssp TSCTTTTTHHHHHHHHHHHHHHTSSS--CCSEEEEEEEEGGG--GSCCHHHHHHHHHHHTGGGSCTTCCCCCHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHcCC--CCcEEEEEEEeecc--cccccHHHHHHHHHHHhcccccccchhhHHHHHHHc
Confidence 34568999999999999999999998 89999999999998 788889999999999999998899999999999999
Q ss_pred CceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEEEEeC-C-eeEEEEEcceEEEee
Q 046427 452 GLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKD-G-KPHLTKVGSFGVDVS 518 (595)
Q Consensus 452 GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSvgG-G-~i~I~~Idgf~v~~~ 518 (595)
||++++.+.+....|+|. +.+.... +++++++|.||++| + .+||++||||++|+.
T Consensus 79 GI~v~~~~~~~~~~~~n~---i~v~~~~---------~~~~~~~v~Gtv~g~~~~~RIv~Idg~~vdvk 135 (135)
T d1ygya4 79 GVTAEICKASESPNHRSV---VDVRAVG---------ADGSVVTVSGTLYGPQLSQKIVQINGRHFDLR 135 (135)
T ss_dssp SCEEEEEEESCCSSSSEE---EEEEEEC---------TTSCEEEEEEEEETTTTEEEEEEETTEEEEEE
T ss_pred CCEEEEEECCCCCCCccc---EEEEEEe---------CCCcEEEEEEEEECCCCcEEEEEECCEEEeeC
Confidence 999999887766555554 4443211 35678999999986 4 579999999999984
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.8e-23 Score=188.65 Aligned_cols=125 Identities=26% Similarity=0.337 Sum_probs=106.0
Q ss_pred CCCeEEEecCCChhHHHHhhcCC--cEEec-CCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFA--NVDCS-YNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGID 128 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~--~v~~~-~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d 128 (595)
.|+|||+++.+++.+++.|++.+ .+.+. ..++++++.+.++++|++++++.+++++++|+++ |+||+|+++|+|||
T Consensus 3 ~kmKILv~d~i~~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~-p~Lk~I~~~gvG~D 81 (132)
T d1sc6a2 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAFAIGTN 81 (132)
T ss_dssp SSCCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEECSSCCT
T ss_pred CCCEEEEECCCCHHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhcc-ccceeEEEeccccc
Confidence 57899999999999999999875 34332 3468999999999999999988889999999998 69999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCc
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGK 179 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~ 179 (595)
|||+++|+++||.|+|+|++++.+||||++.||+ +|++..++...+-+.
T Consensus 82 ~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d~~~~~~~ 130 (132)
T d1sc6a2 82 QVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSDNGSTLSA 130 (132)
T ss_dssp TBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHHHCCCTTB
T ss_pred ccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHhCcCcccc
Confidence 9999999999999999999999999998655443 666666665444333
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.89 E-value=6.1e-23 Score=184.53 Aligned_cols=114 Identities=23% Similarity=0.311 Sum_probs=102.3
Q ss_pred CCeEEEecCCChhHHHHhhcCCcEEecC---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccc
Q 046427 53 KPTVLVAEKLGEAGLDVLKNFANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDN 129 (595)
Q Consensus 53 ~~~il~~~~~~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~ 129 (595)
|||||++.+++++.++.|++.+++.+.+ ..+.+|+.+.++++|++++++.++++++++++++++||+|+++|+|+||
T Consensus 1 K~kVlit~~~~~~~~~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~d~ 80 (129)
T d1gdha2 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDH 80 (129)
T ss_dssp CCEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTT
T ss_pred CCEEEEeCCCCHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCCcc
Confidence 6899999999999999999988887643 3588999999999999999888899999999985589999999999999
Q ss_pred cChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHH
Q 046427 130 VDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMAR 166 (595)
Q Consensus 130 iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R 166 (595)
||+++|+++||+|+|+||+++.+|||+++++|+.+.+
T Consensus 81 ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~ 117 (129)
T d1gdha2 81 IDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA 117 (129)
T ss_dssp BCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977665554444
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.84 E-value=3.6e-23 Score=183.90 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=107.0
Q ss_pred CeEEEecCCChhHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChh
Q 046427 54 PTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLS 133 (595)
Q Consensus 54 ~~il~~~~~~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 133 (595)
+||+++.+++++..+.|++.+++.... .+.++|++++ ++++++.++++ |+||||++.|+|+||||++
T Consensus 1 Mki~v~~~lp~e~~e~L~~~~~v~~~~---------d~~~~d~~l~---~~~~~~~l~~~-~~Lk~i~~~~aG~D~i~~~ 67 (121)
T d1qp8a2 1 MELYVNFELPPEAEEELRKYFKIVRGG---------DLGNVEAALV---SRITAEELAKM-PRLKFIQVVTAGLDHLPWE 67 (121)
T ss_dssp CEEECCSCCCHHHHHHHHTTCEEECSS---------CCTTBCCCCB---SCCCHHHHHHC-TTCCCEEBSSSCCTTSCCT
T ss_pred CEEEEeCCCCHHHHHHhhhcceEeecc---------cccccceeee---eccCHHHHhcC-CCceEEEecccCcCCCCHH
Confidence 589999999999999999877664322 3567888775 47999999998 5999999999999999999
Q ss_pred hHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhc
Q 046427 134 AATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213 (595)
Q Consensus 134 aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~ 213 (595)
++. +||.|+|+||+|+.++|||++++||++.|+ ++|+|+|.||+++|+|+++
T Consensus 68 ~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~---------------------------l~i~G~G~iG~~iA~r~~a 119 (121)
T d1qp8a2 68 SIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN---------------------------LITYATGGRPRNIAKREDY 119 (121)
T ss_dssp TSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH---------------------------HHHHHTTSCCSCBCCGGGT
T ss_pred Hhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC---------------------------EEEEcCCHHHHHHHHHHHh
Confidence 985 699999999999999999999999999983 5899999999999999999
Q ss_pred CC
Q 046427 214 LG 215 (595)
Q Consensus 214 ~G 215 (595)
||
T Consensus 120 ~G 121 (121)
T d1qp8a2 120 IG 121 (121)
T ss_dssp C-
T ss_pred cC
Confidence 97
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.84 E-value=2e-21 Score=174.98 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=100.2
Q ss_pred CeEEEecCC--ChhHHHHhhc-C-CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccC-CCceEEEEcccccc
Q 046427 54 PTVLVAEKL--GEAGLDVLKN-F-ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA-GRLKVVGRAGVGID 128 (595)
Q Consensus 54 ~~il~~~~~--~~~~~~~l~~-~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~-~~Lk~I~~~g~G~d 128 (595)
+||++.+.. ..+.++.+.+ + .++.+......+++.+.++++|+++++..+++++++|++++ ++||+|++.|+|+|
T Consensus 1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~d 80 (131)
T d1dxya2 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD 80 (131)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCCCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccccc
Confidence 478886533 3344554443 2 36666555556788889999999999888899999999742 47999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHH
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~ 175 (595)
|||+++|+++||.|+|+|++++++||||++++||++.|++..+++++
T Consensus 81 ~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~~~~ 127 (131)
T d1dxya2 81 NIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETST 127 (131)
T ss_dssp TBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred cccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHHhhc
Confidence 99999999999999999999999999999999999999998866544
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.83 E-value=3.3e-21 Score=173.50 Aligned_cols=124 Identities=26% Similarity=0.378 Sum_probs=106.1
Q ss_pred CCeEEEecCCC-hhHHHHhhcCCcEEecCCCCHhHHhhh-cCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccccc
Q 046427 53 KPTVLVAEKLG-EAGLDVLKNFANVDCSYNLSPEELCTK-ISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNV 130 (595)
Q Consensus 53 ~~~il~~~~~~-~~~~~~l~~~~~v~~~~~~~~~el~~~-i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~i 130 (595)
+|+|++.|... ...++.|++.+++.+....+.+|+.+. +.++|++++++.+++++++|+++ |+||+|+++|+|+|||
T Consensus 1 mP~v~~ld~~d~~~e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~-~~Lk~I~~~g~G~d~i 79 (133)
T d1mx3a2 1 MPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVRIGSGFDNI 79 (133)
T ss_dssp CCEEEESSCSCCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEESSSCCTTB
T ss_pred CCEEEEecCCcchhhHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhC-CCCeEEEEcCCCcccE
Confidence 57888888654 344778888888888766677776654 46789889988899999999998 6999999999999999
Q ss_pred ChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccc
Q 046427 131 DLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQR 182 (595)
Q Consensus 131 D~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~ 182 (595)
|+++|+++||.|+|+||+++. +|||+++|+|+++|+++++.+ |+|.+
T Consensus 80 D~~~~~~~gI~v~n~p~~~~~-vAE~a~~lil~~~R~i~~a~~----g~~~~ 126 (133)
T d1mx3a2 80 DIKSAGDLGIAVCNVPAASVY-SEQASIEMREEAAREIRRAIT----GRIPD 126 (133)
T ss_dssp CHHHHHHTTCEEECCCSTTHC-CHHHHHHHHHHHHHHHHHHHH----SCTTT
T ss_pred eeeeheeCCEEEEcCCCCCch-hHHHHHHHHHHHHhhHHHHHh----ccccc
Confidence 999999999999999999985 799999999999999999865 66655
|
| >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.80 E-value=2.6e-20 Score=174.10 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=98.8
Q ss_pred HHHhhcCC-cEEecC--CCCHhHHhhhcCCceEEEEcC--CCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCce
Q 046427 67 LDVLKNFA-NVDCSY--NLSPEELCTKISLCDALIVRS--GTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCL 141 (595)
Q Consensus 67 ~~~l~~~~-~v~~~~--~~~~~el~~~i~~~d~li~~~--~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~ 141 (595)
.++|++.+ ++.... ..+.+++.+.+.|+|++|++. ..++|+|+|+++ ||||+|+++|+|+||||+++|+++||.
T Consensus 60 r~~Le~~GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~a-p~LKlI~~~g~G~D~VDl~aa~e~gI~ 138 (186)
T d2naca2 60 RKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRNVT 138 (186)
T ss_dssp HHHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTCE
T ss_pred HHHHHHCCCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcC-ccceEEEEeccCCccccHHHHHhCCCE
Confidence 56788775 554433 334668899999999999974 568999999998 699999999999999999999999999
Q ss_pred EEeCCCCCchHHHHHH--------HHHHHHHHHchHHHHHHHHcCcc
Q 046427 142 VVNAPTANTIAAAEHG--------IALLTAMARNIAQADASVKAGKW 180 (595)
Q Consensus 142 V~n~p~~~~~~vAE~~--------l~l~l~~~R~i~~~~~~~~~g~W 180 (595)
|+|+||+|+.+||||+ +.++++..|++...+..+++|+|
T Consensus 139 V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~ 185 (186)
T d2naca2 139 VAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185 (186)
T ss_dssp EEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred EEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence 9999999999999999 77888888999998888999988
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=99.75 E-value=1e-18 Score=157.58 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=92.0
Q ss_pred eEEEecCC--ChhHHHHh-hcCCc--EEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccC-CCceEEEEcccccc
Q 046427 55 TVLVAEKL--GEAGLDVL-KNFAN--VDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA-GRLKVVGRAGVGID 128 (595)
Q Consensus 55 ~il~~~~~--~~~~~~~l-~~~~~--v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~-~~Lk~I~~~g~G~d 128 (595)
||++-.-. ..+.++.+ +..++ +........+|+.+.++++|+++++..++++++++++++ ++||+|++.|+|||
T Consensus 2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d 81 (134)
T d1j4aa2 2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVD 81 (134)
T ss_dssp EEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred eEEEEecccccHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcC
Confidence 67774332 22334333 44444 444443344778889999999999888899999998642 47999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccc
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQ 181 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~ 181 (595)
|||+++|+++||.|+|+|++ ++|||++++||+++|++.. .+.+|+|.
T Consensus 82 ~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~---~~~~~k~~ 128 (134)
T d1j4aa2 82 NIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNL---ELVEGKEA 128 (134)
T ss_dssp TBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHH---HHHTTCCC
T ss_pred ccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhH---HHhhhhcc
Confidence 99999999999999999987 5799999999999998744 44445443
|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=4e-17 Score=133.16 Aligned_cols=76 Identities=25% Similarity=0.441 Sum_probs=74.3
Q ss_pred CccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEEeC
Q 046427 520 EGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595 (595)
Q Consensus 520 ~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i~~ 595 (595)
++++|++.|.|+||+|++|+++|+++||||++|+++|..+++.|+|++++|++++++++++|+++++|.+|++++|
T Consensus 2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~~~~~vl~~I~~~~~V~~v~~i~l 77 (78)
T d1ygya3 2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDL 77 (78)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEEEC
T ss_pred CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCCCccHHHHHHHHcCCCeEEEEEEec
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999986
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.3e-16 Score=144.33 Aligned_cols=121 Identities=21% Similarity=0.304 Sum_probs=100.3
Q ss_pred ceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+..|.||+++|+|||.||+.+|+++++|||+|++||+++ ..-.+...|++..+++++++.+|++++++ .++++|
T Consensus 18 t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaT----Gn~~vI 93 (163)
T d1li4a1 18 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTT----GCIDII 93 (163)
T ss_dssp HCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECS----SCSCSB
T ss_pred hCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecC----CCccch
Confidence 4567999999999999999999999999999999999987 34456677888889999999999998876 478999
Q ss_pred cHHHHhcCCCceEEEecc-CCchhcHHHHHHHHhcCCeeEEEEecCC
Q 046427 265 NDEAFFKMKKGVRIVNVA-RGGVVDEEALVRALDSGIISQAALDVFT 310 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~a-rg~~vd~~aL~~aL~~g~i~ga~lDv~~ 310 (595)
+.+.|++||+|++|.|++ +..-+|.++|.+...+.+.....+|.|.
T Consensus 94 ~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~ 140 (163)
T d1li4a1 94 LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR 140 (163)
T ss_dssp CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred hHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence 999999999999999998 5556788888775444333344445443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.49 E-value=8.7e-14 Score=128.54 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=101.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCc--ccCHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVG--LVSFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~--~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
++|||||+|+||+++|+.++..|.+|.+||++. ..+.+.+.|+. ..+..+.+++||+|++|+| ...+..+++ +..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp-~~~~~~vl~-~l~ 78 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTP-IQLILPTLE-KLI 78 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSC-HHHHHHHHH-HHG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCc-Hhhhhhhhh-hhh
Confidence 479999999999999999999999999999986 34566777752 3355578899999999999 456777774 456
Q ss_pred hcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCC-CCCCCCcccccCCcEEEcCCCCCC
Q 046427 270 FKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTE-EPPAKDSKLVLHENVTVTPHLGAS 335 (595)
Q Consensus 270 ~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~-EP~~~~~~L~~~~nvilTPHi~~~ 335 (595)
..+++++++++++..+...... ...+...-+..-.+.-.+. .|..+...||.+..+++||+-++.
T Consensus 79 ~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~ 144 (165)
T d2f1ka2 79 PHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD 144 (165)
T ss_dssp GGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC
T ss_pred hhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCC
Confidence 7799999999998776544444 3344444343222222111 133345678889999999986655
|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=6.7e-14 Score=115.44 Aligned_cols=73 Identities=18% Similarity=0.344 Sum_probs=69.8
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEE
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
.+.|++.|+|+||++++|+++|+++|+||++|.+.|..+++.+++.+++|++++++++++|+++|+|.+++++
T Consensus 11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l 83 (84)
T d1sc6a3 11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 83 (84)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEe
Confidence 4788899999999999999999999999999999999999999999999999999999999999999999986
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.42 E-value=8.9e-13 Score=122.01 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=102.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCC-cHHHHHHcCCc---ccCHHH-hccccCEEEEeCCCChhcccccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYA-QADRARATGVG---LVSFEE-AISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~-~~~~a~~~g~~---~~~l~e-ll~~aD~V~l~~Plt~~t~~li~ 265 (595)
|+|+|||+|.||.++|+.|+..| .+|++||++. ..+.+++.+.. ..+.++ ...++|+|++|+| ..++..+++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p-~~~~~~vl~ 80 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFREIAK 80 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSC-HHHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCC-chhhhhhhh
Confidence 57999999999999999999777 4899999987 45667777752 123443 3458999999999 445666664
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCC-CCCCCCcccccCCcEEEcCCCCCC
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTE-EPPAKDSKLVLHENVTVTPHLGAS 335 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~-EP~~~~~~L~~~~nvilTPHi~~~ 335 (595)
+....+++++++++++.......+++.+.+...-+.+.-+.-.+. .|..++..||+..++++|||-...
T Consensus 81 -~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~ 150 (171)
T d2g5ca2 81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD 150 (171)
T ss_dssp -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC
T ss_pred -hhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCCC
Confidence 355668999999999987776666777777665444433333221 133567789999999999986643
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=99.37 E-value=8.2e-13 Score=120.83 Aligned_cols=103 Identities=24% Similarity=0.370 Sum_probs=89.3
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
...+.||++.|+|||.+|+.+|++++++|++|++++.++ ..-+|...|++..+++++++.+|+++.++. .+++|+
T Consensus 18 ~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTG----n~~vI~ 93 (163)
T d1v8ba1 18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTG----NVDVIK 93 (163)
T ss_dssp CCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCS----SSSSBC
T ss_pred CceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCC----CCcccc
Confidence 456999999999999999999999999999999998876 344567789999999999999999999886 567999
Q ss_pred HHHHhcCCCceEEEeccCCch-hcHHHHH
Q 046427 266 DEAFFKMKKGVRIVNVARGGV-VDEEALV 293 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~-vd~~aL~ 293 (595)
.+.|..||+|++|.|++.-.. +|.++|.
T Consensus 94 ~~h~~~MKdgaIl~N~GHfd~EIdv~~L~ 122 (163)
T d1v8ba1 94 LEHLLKMKNNAVVGNIGHFDDEIQVNELF 122 (163)
T ss_dssp HHHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred HHHHHHhhCCeEEEeccccchhhhhHHHH
Confidence 999999999999999987654 3455544
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.36 E-value=8.2e-13 Score=121.73 Aligned_cols=109 Identities=14% Similarity=0.241 Sum_probs=93.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhcccccc--HHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFN--DEA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~--~~~ 268 (595)
++|||||+|.||+.+|++|...|++|++||++.. .+...+.+... .+..|++++||+|++|+|..++.+.++. ...
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 4799999999999999999999999999999873 34455666654 3799999999999999998888888763 346
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+..+++|.++||++....-....+.+.+++..+
T Consensus 81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~ 113 (161)
T d1vpda2 81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGV 113 (161)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 778999999999999998888889999988777
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.26 E-value=6.3e-12 Score=115.84 Aligned_cols=114 Identities=19% Similarity=0.267 Sum_probs=94.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhcccccc--HHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFN--DEA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~--~~~ 268 (595)
++|||||+|.||+++|++|...|++|.+||++.. .+.+...+... .++.+++.++|+|++|+|..+..+.++. ...
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~ 81 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 81 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence 5799999999999999999999999999998863 34455666543 4799999999999999998887776653 335
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEec
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDV 308 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv 308 (595)
+..+++|.++||++....-+...+.+.+++..+ ..+|.
T Consensus 82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi--~~~da 119 (162)
T d3cuma2 82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLDA 119 (162)
T ss_dssp HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEEC
T ss_pred cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCC--cEEec
Confidence 777999999999999998888899999988776 55564
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.08 E-value=1.5e-10 Score=107.81 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=91.6
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCc---------ccCHHHhccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVG---------LVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~---------~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.++|||||+|.||..||++|...|++|.+||++... +...+.+.. ..++.+.+..+|.+++++|..+.+.
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 357999999999999999999999999999998743 333333321 1256788899999999999888877
Q ss_pred ccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD 307 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD 307 (595)
..+ ...+..+++|.++||++....-+...+.+.+....+ ..+|
T Consensus 82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~--~~ld 124 (176)
T d2pgda2 82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI--LFVG 124 (176)
T ss_dssp HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEE
T ss_pred HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCC--ceec
Confidence 765 457788999999999999999888888888888777 4455
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.96 E-value=7.2e-10 Score=100.98 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=84.8
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH-HHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD-RARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM 272 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~m 272 (595)
+|||||+|+||..+|++|...|..++++|...... ...+.+. ..+..+.+.++|++++++|..++..... ...+..+
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~ 79 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGS-EAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL 79 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEEEECSSTHHHHHHHHHHCC-EECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHcCC-cccccccccceeEEEecccchhhhhhhh-ccccccc
Confidence 69999999999999999998888775444333222 2233333 3344577778999999999877666554 5578889
Q ss_pred CCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEec
Q 046427 273 KKGVRIVNVARGGVVDEEALVRALDSGIISQAALDV 308 (595)
Q Consensus 273 k~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv 308 (595)
+++.++||+++...-....+.+.+++..+ -.+|.
T Consensus 80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi--~~lda 113 (156)
T d2cvza2 80 REGTYWVDATSGEPEASRRLAERLREKGV--TYLDA 113 (156)
T ss_dssp CTTEEEEECSCCCHHHHHHHHHHHHTTTE--EEEEC
T ss_pred cccccccccccCCHHHHHHHHHHHHHcCC--eEEec
Confidence 99999999999999888899999998877 44453
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.89 E-value=2.1e-09 Score=97.40 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=77.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHHHHh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
.+|||||+|+||+.+|++|+..|++|++||+.... ......++. ..+++|++++||+|++|+|... ....+.. ..
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~-~~~~~~~-~~- 77 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGV-ALGAARR-AG- 77 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGG-HHHHHHH-HH-
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCch-HHHHHHh-hc-
Confidence 47999999999999999999999999999976632 233333332 2378999999999999999543 3333311 22
Q ss_pred cCCCceEEEeccCCchhcHHHHHHHHhcCC
Q 046427 271 KMKKGVRIVNVARGGVVDEEALVRALDSGI 300 (595)
Q Consensus 271 ~mk~gailiN~arg~~vd~~aL~~aL~~g~ 300 (595)
-..+.++|+++.......+.+.+.+++.+
T Consensus 78 -~~~~~~~id~st~~p~~~~~l~~~~~~~~ 106 (152)
T d1i36a2 78 -RHVRGIYVDINNISPETVRMASSLIEKGG 106 (152)
T ss_dssp -TTCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred -ccCCceeeccCcCCHHHHHHHHHHHhccC
Confidence 23367899999888877788888887654
|
| >d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal domain {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Serine metabolism enzymes domain family: Serine dehydratase beta chain-like domain: L-serine dehydratase SdhL, N-terminal domain species: Legionella pneumophila [TaxId: 446]
Probab=98.75 E-value=3.4e-09 Score=95.17 Aligned_cols=114 Identities=12% Similarity=-0.023 Sum_probs=76.6
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhh------
Q 046427 377 LAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQ------ 450 (595)
Q Consensus 377 ~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e------ 450 (595)
+.|+.....-+..+..+.... .+++|+++++||++ .|.++|++|+|++.||+ ++..++++..++..+.++
T Consensus 5 vGPmrAa~~F~~~l~~~~~~~--~~~~v~v~LyGSLa-~TG~GHgTD~Av~~GL~-G~~P~~~d~~~~~~~~~~i~~~~~ 80 (145)
T d2iafa1 5 VGPMLAANAFLQLLEQKNLFD--KTQRVKVELYGSLA-LTGKGHGTDKAILNGLE-NKAPETVDPASMIPRMHEILDSNL 80 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--TCCEEEEEEEHHHH-HTCTTSSHHHHHHHHTT-TCCCC-----CHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHHHhCcccC--CccEEEEEEehhhh-hcCCccCccHHHHhhcc-CCCccccChhhhHHHHHHHHhcCc
Confidence 456666666666666665555 68999999999998 99999999999999999 445557766665543322
Q ss_pred ------------CCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCce-EEEEE-EEeCCeeE
Q 046427 451 ------------RGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGD-IRVEG-RVKDGKPH 506 (595)
Q Consensus 451 ------------~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~-~~v~G-SvgGG~i~ 506 (595)
.+.++.|...+.-+.|||+..+...+. +++. .+.+. |||||-|+
T Consensus 81 l~l~~~~~i~f~~~~di~f~~~~~lp~HpNgm~f~a~d~------------~g~~l~~~tyySIGGGFI~ 138 (145)
T d2iafa1 81 LNLAGKKEIPFHEATDFLFLQKELLPKHSNGMRFSAFDG------------NANLLIEQVYYSIGGGFIT 138 (145)
T ss_dssp EEETTTEEEECCHHHHEEEETTCCCSSCSSEEEEEEECT------------TSCEEEEEEEEECSSSCEE
T ss_pred ccccccccccccccccceecccccCCCCCCccEEEEECC------------CCCEEEEEEEEEcCCeEEe
Confidence 123455655454567999988877653 2333 35666 88899764
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=98.75 E-value=1.1e-08 Score=92.28 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=75.1
Q ss_pred ecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHH
Q 046427 190 LVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 190 l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
..=|+|+||| +|.||+++|++|+..|++|.+||+.... ..++.++.+|++++++|.. .+...+ .+.
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-----------~~~~~~~~~~~v~~~~~~~-~~~~v~-~~~ 73 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----------VAESILANADVVIVSVPIN-LTLETI-ERL 73 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----------GHHHHHTTCSEEEECSCGG-GHHHHH-HHH
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-----------ccchhhhhccccccccchh-hheeee-ecc
Confidence 3446999999 9999999999999999999999986532 2356778999999999953 344444 556
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+..++++++++|++.-+.-..+++.+.+..
T Consensus 74 ~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~ 103 (152)
T d2pv7a2 74 KPYLTENMLLADLTSVKREPLAKMLEVHTG 103 (152)
T ss_dssp GGGCCTTSEEEECCSCCHHHHHHHHHHCSS
T ss_pred cccccCCceEEEecccCHHHHHHHHHHccC
Confidence 778999999999998776555566555443
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.73 E-value=2e-08 Score=90.99 Aligned_cols=104 Identities=15% Similarity=0.292 Sum_probs=80.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
++|||||+|+||+++++.+...|.+|++|+++... +..++.|+... +.++++++||+|++|++ |+. + .+.+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~---~-~~vl 74 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQL---F-ETVL 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGG---H-HHHH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHh---H-HHHh
Confidence 47999999999999999999999999999987532 23456677654 79999999999999996 321 1 4456
Q ss_pred hcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEE
Q 046427 270 FKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQA 304 (595)
Q Consensus 270 ~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga 304 (595)
+.++++.++|+++-| +..+.|.+.+..+ ++.-+
T Consensus 75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~~~~ivr~ 108 (152)
T d2ahra2 75 KPLHFKQPIISMAAG--ISLQRLATFVGQDLPLLRI 108 (152)
T ss_dssp TTSCCCSCEEECCTT--CCHHHHHHHHCTTSCEEEE
T ss_pred hhcccceeEeccccc--ccHHHHHhhhcccccchhh
Confidence 778999999999876 3556677777554 45433
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.66 E-value=4.4e-08 Score=90.55 Aligned_cols=118 Identities=13% Similarity=0.184 Sum_probs=89.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCc---------ccC---HHHhccccCEEEEeCCCChh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVG---------LVS---FEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~---------~~~---l~ell~~aD~V~l~~Plt~~ 259 (595)
++|||||+|+||..+|++|...|++|++||++... +...+.+.. ..+ +-..+..++.++++++....
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 47999999999999999999999999999997632 333333321 112 34556789999999997776
Q ss_pred ccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCC
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTE 311 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~ 311 (595)
....++ .....++++.+++|+++...-+...+.+.+....+...-.-|++.
T Consensus 82 ~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~ 132 (178)
T d1pgja2 82 TDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGG 132 (178)
T ss_dssp HHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESH
T ss_pred hhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCC
Confidence 666664 456679999999999999988888999999888774443334554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.57 E-value=9.5e-08 Score=87.83 Aligned_cols=104 Identities=23% Similarity=0.235 Sum_probs=74.1
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCC---------------c-ccCHHHhccccCEEEEeC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGV---------------G-LVSFEEAISTADFISLHM 254 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~---------------~-~~~l~ell~~aD~V~l~~ 254 (595)
.||++|||.|.||..+|..|...|++|.+||++.. .+...+.+. . ..++.|.+++||+|++++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 48999999999999999999999999999999753 233333321 0 136899999999999999
Q ss_pred CCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 255 PLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 255 Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
| +..+..++ ++....++++.+++-+ .|.......+.+.+..
T Consensus 81 ~-~~~~~~~~-~~i~~~l~~~~~iv~~-~g~~~~~~~~~~~~~~ 121 (184)
T d1bg6a2 81 P-AIHHASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE 121 (184)
T ss_dssp C-GGGHHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred c-hhHHHHHH-HHhhhccCCCCEEEEe-CCCCccHHHHHHHHHH
Confidence 9 44555555 3345578999988854 3333344444444443
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=98.48 E-value=2.9e-08 Score=89.33 Aligned_cols=86 Identities=12% Similarity=-0.025 Sum_probs=58.6
Q ss_pred EEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-H-HHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcC
Q 046427 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-A-DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM 272 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~-~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~m 272 (595)
|||||+|+||+.+|+.|+.-+..+.+|+|+.. . ..+...+....++.+++++||+|++|+|.. +... .+..+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i~~-----v~~~l 75 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YIKT-----VANHL 75 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-THHH-----HHTTT
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hhhH-----HHhhh
Confidence 79999999999999998774443468998763 2 233444555668999999999999999953 3333 34445
Q ss_pred -CCceEEEeccCCch
Q 046427 273 -KKGVRIVNVARGGV 286 (595)
Q Consensus 273 -k~gailiN~arg~~ 286 (595)
+++.++|+++.+.-
T Consensus 76 ~~~~~ivi~~s~~~~ 90 (153)
T d2i76a2 76 NLGDAVLVHCSGFLS 90 (153)
T ss_dssp CCSSCCEEECCSSSC
T ss_pred cccceeeeecccchh
Confidence 47999999987654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=98.42 E-value=5e-07 Score=85.39 Aligned_cols=106 Identities=25% Similarity=0.303 Sum_probs=85.4
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhcc-ccCEEEEeCCCChhccccccH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAIS-TADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~-~aD~V~l~~Plt~~t~~li~~ 266 (595)
.|.||||+|.|+|++|+.+|+.|..+|++|+++|.+. ........|.+.++.++++. +||+++-|. +.+.|++
T Consensus 24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA-----~~~~I~~ 98 (201)
T d1c1da1 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-----MGGVITT 98 (201)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-----CSCCBCH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeeccc-----ccccccH
Confidence 5999999999999999999999999999999999876 34556677888888899887 799998765 5678999
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+...+++- .+|+..+-+++.++++ .+.|.+..|
T Consensus 99 ~~a~~i~a-k~i~e~AN~p~~~~~~-~~~L~~rgI 131 (201)
T d1c1da1 99 EVARTLDC-SVVAGAANNVIADEAA-SDILHARGI 131 (201)
T ss_dssp HHHHHCCC-SEECCSCTTCBCSHHH-HHHHHHTTC
T ss_pred HHHhhhhh-heeeccCCCCcchhhH-HHHhcccce
Confidence 99998874 4677777777766543 455555544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.38 E-value=7.2e-07 Score=82.50 Aligned_cols=97 Identities=25% Similarity=0.374 Sum_probs=76.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-----------------------------
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV----------------------------- 238 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~----------------------------- 238 (595)
.+.--+|.|||.|..|..-++.++++|.+|.+||.+. ..+..++++-.++
T Consensus 26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 3566799999999999999999999999999999877 4455555553222
Q ss_pred -CHHHhccccCEEEEeC--CCChhccccccHHHHhcCCCceEEEecc--CCch
Q 046427 239 -SFEEAISTADFISLHM--PLTPATSKMFNDEAFFKMKKGVRIVNVA--RGGV 286 (595)
Q Consensus 239 -~l~ell~~aD~V~l~~--Plt~~t~~li~~~~l~~mk~gailiN~a--rg~~ 286 (595)
.+.+.+++||+|+.++ |-. ..-.+|.++.++.||||++|||++ .|+.
T Consensus 106 ~~l~~~l~~aDlVI~talipG~-~aP~lit~~mv~~Mk~GSVIVDvaidqGGn 157 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGN 157 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred HHHHHHHHhhhhheeeeecCCc-ccceeehHHHHHhcCCCcEEEEEeecCCCc
Confidence 1345588999999654 432 366789999999999999999998 5554
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.37 E-value=2.1e-07 Score=85.00 Aligned_cols=91 Identities=23% Similarity=0.396 Sum_probs=76.4
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC--cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA--QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
-|++|+|+|||||.-|++=|..|+..|++|++=-+.. +.+.+++.|++..+++|+.++||+|.+.+|. +.-..+..+
T Consensus 13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~PD-~~q~~vy~~ 91 (182)
T d1np3a2 13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPD-EFQGRLYKE 91 (182)
T ss_dssp HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCH-HHHHHHHHH
T ss_pred HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecch-HHHHHHHHH
Confidence 4889999999999999999999999999987754432 4577889999999999999999999999994 334556667
Q ss_pred HHHhcCCCceEEEe
Q 046427 267 EAFFKMKKGVRIVN 280 (595)
Q Consensus 267 ~~l~~mk~gailiN 280 (595)
+....||+|+.|.=
T Consensus 92 ~I~p~lk~g~~L~F 105 (182)
T d1np3a2 92 EIEPNLKKGATLAF 105 (182)
T ss_dssp HTGGGCCTTCEEEE
T ss_pred hhhhhcCCCcEEEE
Confidence 77888999987763
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.36 E-value=5e-07 Score=82.49 Aligned_cols=93 Identities=27% Similarity=0.316 Sum_probs=74.3
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcC---Ccc-----cCHHHhccccCEEEEeCCC-Chh
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATG---VGL-----VSFEEAISTADFISLHMPL-TPA 259 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g---~~~-----~~l~ell~~aD~V~l~~Pl-t~~ 259 (595)
+.-.++.|||.|..|..-++.++++|.+|.++|.+.. .+..+... ++. ..+++.+++||+|+.++=. ...
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 5667999999999999999999999999999998763 22222221 221 1478999999999987532 335
Q ss_pred ccccccHHHHhcCCCceEEEecc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a 282 (595)
.-.+|.++.++.||||+++||++
T Consensus 110 aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 110 APILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp CCCCBCHHHHTTSCTTCEEEETT
T ss_pred cCeeecHHHHhhcCCCcEEEEee
Confidence 78899999999999999999997
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.34 E-value=5.3e-07 Score=81.09 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=72.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCc-HH-HHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQ-AD-RARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~-~~-~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
.+|||||+|+||+++++.+...| .+|.+||++.. .+ ...+.|+...+-.+.+++||+|++|++ ..+...+ +
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavk-P~~~~~v-----~ 74 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVK-PQDMEAA-----C 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSC-HHHHHHH-----H
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecC-HHHHHHh-----H
Confidence 47999999999999999887555 89999999863 22 344567766544455778999999997 2223322 2
Q ss_pred hcC-CCceEEEeccCCchhcHHHHHHHHhc-CCeeEE
Q 046427 270 FKM-KKGVRIVNVARGGVVDEEALVRALDS-GIISQA 304 (595)
Q Consensus 270 ~~m-k~gailiN~arg~~vd~~aL~~aL~~-g~i~ga 304 (595)
+.+ +.+.++|.+.-|- ..+.+.+.+.. .++..+
T Consensus 75 ~~l~~~~~~viS~~ag~--~~~~l~~~l~~~~~iir~ 109 (152)
T d1yqga2 75 KNIRTNGALVLSVAAGL--SVGTLSRYLGGTRRIVRV 109 (152)
T ss_dssp TTCCCTTCEEEECCTTC--CHHHHHHHTTSCCCEEEE
T ss_pred HHHhhcccEEeecccCC--CHHHHHHHhCcCcceEee
Confidence 223 3478999888765 45667777743 356554
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.17 E-value=2.1e-06 Score=77.99 Aligned_cols=92 Identities=22% Similarity=0.337 Sum_probs=69.8
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCc--HHHHHHcCCccc---CHHHhccccCEEEEeCCCChhccc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQ--ADRARATGVGLV---SFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~--~~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.+.++++.|||.|.||+.+++.|...|. ++.+++|... ...+.+.|.... ++.+.+.++|+|+.|++ ....
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~ats---s~~~ 97 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA---APHP 97 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS---SSSC
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecC---CCCc
Confidence 5899999999999999999999999997 6999998752 334556665543 57778889999999987 3466
Q ss_pred cccHHHHhcC------CCceEEEeccC
Q 046427 263 MFNDEAFFKM------KKGVRIVNVAR 283 (595)
Q Consensus 263 li~~~~l~~m------k~gailiN~ar 283 (595)
+|+++.++.. ++..+++|.+.
T Consensus 98 ii~~~~i~~~~~~r~~~~~~~iiDlav 124 (159)
T d1gpja2 98 VIHVDDVREALRKRDRRSPILIIDIAN 124 (159)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred cccHhhhHHHHHhcccCCCeEEEeecC
Confidence 7777766421 23457777663
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=9.5e-06 Score=75.73 Aligned_cols=145 Identities=15% Similarity=0.110 Sum_probs=94.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-----------HHcCC------------------c-ccCHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-----------RATGV------------------G-LVSFE 241 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g~------------------~-~~~l~ 241 (595)
|+|+|||.|.||+.+|..+...|++|+.||++... +.+ .+.+. . ..++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~ 84 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 84 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence 68999999999999999999999999999987521 111 01111 1 12678
Q ss_pred HhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCCCCCCCCCccc
Q 046427 242 EAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFTEEPPAKDSKL 320 (595)
Q Consensus 242 ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~~L 320 (595)
+.+++||+|+=|+|..-+.+.-+-++.=+.++++++|.....+- ....|...+... ++ .++.-|.+- ...||
T Consensus 85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~--ig~HffnP~---~~~~l 157 (192)
T d1f0ya2 85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQDRF--AGLHFFNPV---PVMKL 157 (192)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCGGGE--EEEEECSST---TTCCE
T ss_pred hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc--ccchhhhhccCHhHE--Eeecccccc---CcccE
Confidence 89999999999999887777666555555688998887665543 344455555433 44 555555432 22455
Q ss_pred ccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 046427 321 VLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGE 358 (595)
Q Consensus 321 ~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~ 358 (595)
. =+.||-..+ .++++.+.+|++.-
T Consensus 158 V-----EIv~g~~T~---------~~~i~~~~~~~~~l 181 (192)
T d1f0ya2 158 V-----EVIKTPMTS---------QKTFESLVDFSKAL 181 (192)
T ss_dssp E-----EEECCTTCC---------HHHHHHHHHHHHHT
T ss_pred E-----EEcCCCCCC---------HHHHHHHHHHHHHc
Confidence 4 355553323 34455555655443
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.08 E-value=2.8e-06 Score=80.09 Aligned_cols=89 Identities=24% Similarity=0.291 Sum_probs=71.0
Q ss_pred ecC-CEEEEEeCChHHHHHHHHHhc------CCCEEEE-ECCC-CcHHHHHHcCCc-----ccCHHHhccccCEEEEeCC
Q 046427 190 LVG-KTLAVMGFGKVGTEVARRAKG------LGMNVIA-HDPY-AQADRARATGVG-----LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 190 l~g-ktvGIIGlG~IG~~vA~~l~~------~G~~V~~-~d~~-~~~~~a~~~g~~-----~~~l~ell~~aD~V~l~~P 255 (595)
++| |+|+|||||.-|++=|..|+. .|.+|++ ..+. .+.+.+++.|++ ..+.+|+.++||+|.+.+|
T Consensus 41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP 120 (226)
T d1qmga2 41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120 (226)
T ss_dssp TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence 678 899999999999999999997 5566654 4444 367888999986 4478999999999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEe
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN 280 (595)
... -..+.+ +....||+|+.|.=
T Consensus 121 De~-Q~~vy~-~I~p~Lk~G~~L~F 143 (226)
T d1qmga2 121 DSA-QADNYE-KVFSHMKPNSILGL 143 (226)
T ss_dssp HHH-HHHHHH-HHHHHSCTTCEEEE
T ss_pred hHH-HHHHHH-HHHHhcCCCceeee
Confidence 544 344554 57788999987764
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=98.07 E-value=1.8e-06 Score=73.58 Aligned_cols=90 Identities=14% Similarity=0.033 Sum_probs=67.7
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHH---HHcCCccc---CHHHhccccCEEEEeCCCChhcc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA---RATGVGLV---SFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a---~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.+|+||+++|||.|.+|..-|+.+..+|++|+++++....+.. .+.+++.. --++.+..+++|+.+...
T Consensus 8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d----- 82 (113)
T d1pjqa1 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD----- 82 (113)
T ss_dssp ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC-----
T ss_pred EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCC-----
Confidence 4799999999999999999999999999999999988754332 22233221 124567789999887653
Q ss_pred ccccHHHHhcCCCceEEEecc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~a 282 (595)
..+|++....+|+-.++||++
T Consensus 83 ~~~n~~i~~~a~~~~ilVNv~ 103 (113)
T d1pjqa1 83 DTVNQRVSDAAESRRIFCNVV 103 (113)
T ss_dssp HHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHHHHcCCEEEeC
Confidence 234666667788888999975
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.00 E-value=5.5e-06 Score=76.94 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=86.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHH-----------HcC-C------------cccCHHHhcccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRAR-----------ATG-V------------GLVSFEEAISTA 247 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g-~------------~~~~l~ell~~a 247 (595)
|+|+|||.|.||+.+|..+...|++|..||++... +.+. ..+ . ...+..+.+.+|
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 84 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV 84 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence 57999999999999999999999999999997521 2110 011 0 111222457899
Q ss_pred CEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCCCCCCCCCcccccCCcE
Q 046427 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFTEEPPAKDSKLVLHENV 326 (595)
Q Consensus 248 D~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~~L~~~~nv 326 (595)
|+|+-++|...+.+.-+-++.-+.++++++|...+.+- ....|.+.+..- ++ .++.-|.+-+ ..||.+ +
T Consensus 85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l--~i~~la~~~~~p~r~--~g~Hf~nP~~---~~~lVE---i 154 (186)
T d1wdka3 85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALKRPENF--VGMHFFNPVH---MMPLVE---V 154 (186)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSCGGGE--EEEECCSSTT---TCCEEE---E
T ss_pred ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccc--cHHHHHHhccCchhe--EeeccccCcc---cCCeEE---E
Confidence 99999999888877766666667789999988776654 345555555432 44 5555554332 345653 5
Q ss_pred EEcCCC
Q 046427 327 TVTPHL 332 (595)
Q Consensus 327 ilTPHi 332 (595)
+-+|+.
T Consensus 155 v~~~~T 160 (186)
T d1wdka3 155 IRGEKS 160 (186)
T ss_dssp EECSSC
T ss_pred CCCCCC
Confidence 555553
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.98 E-value=9.9e-06 Score=76.00 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=68.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC---------------------Cc-ccCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG---------------------VG-LVSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g---------------------~~-~~~l~ell~~aD~V 250 (595)
++|+|||+|.+|..+|..+...|++|++||.+...-.....| .. ..++.+.+++||++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 479999999999999999999999999999764211111111 11 23688889999999
Q ss_pred EEeCCCChhcc----------cccc--HHHHhcCCCceEEEeccCCchhcHHHHH
Q 046427 251 SLHMPLTPATS----------KMFN--DEAFFKMKKGVRIVNVARGGVVDEEALV 293 (595)
Q Consensus 251 ~l~~Plt~~t~----------~li~--~~~l~~mk~gailiN~arg~~vd~~aL~ 293 (595)
++|+| ||... ..++ ...+...+++.++|-.+...+=..+.+.
T Consensus 81 ~i~Vp-TP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~ 134 (202)
T d1mv8a2 81 FICVG-TPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVV 134 (202)
T ss_dssp EECCC-CCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTH
T ss_pred EEecC-ccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhh
Confidence 99999 44111 1111 1234456789999998886654444433
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.80 E-value=0.00035 Score=64.43 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=86.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCC-------------------c-ccCHHHhccccCEEEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGV-------------------G-LVSFEEAISTADFISL 252 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~-------------------~-~~~l~ell~~aD~V~l 252 (595)
++|+|||+|.+|..+|..+ +.|++|++||.+...-.....|. . ..+......++|++++
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 4799999999999999877 46999999998753211111111 1 1245566789999999
Q ss_pred eCCCChhcc-cccc-------HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcc---cc
Q 046427 253 HMPLTPATS-KMFN-------DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSK---LV 321 (595)
Q Consensus 253 ~~Plt~~t~-~li~-------~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~---L~ 321 (595)
|+|...... +..+ .+.+...+++.+++--+.-.+=..+.+..-+.+.+++ |.+|-+...+- +.
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~ 153 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL 153 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence 999544322 1111 1123345678888888877766777888888777762 56776644443 45
Q ss_pred cCCcEEEcCC
Q 046427 322 LHENVTVTPH 331 (595)
Q Consensus 322 ~~~nvilTPH 331 (595)
..|++|+--+
T Consensus 154 ~p~riv~G~~ 163 (196)
T d1dlja2 154 YPSRIIVSCE 163 (196)
T ss_dssp SCSCEEEECC
T ss_pred CCCEEEEeCC
Confidence 5677765443
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.80 E-value=1.8e-05 Score=72.78 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=64.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHc---------CC--------cccCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARAT---------GV--------GLVSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~---------g~--------~~~~l~ell~~aD~V~l~~P 255 (595)
++|+|||.|.+|.++|..|...|.+|..|.+....+..... +. ...++++++++||+|++++|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 47999999999999999999999999999875433222211 00 02368899999999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEeccCCch
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~arg~~ 286 (595)
....+.++.+ ....+++. .++.++.|..
T Consensus 81 -s~~~~~~~~~-l~~~l~~~-~ii~~tkg~~ 108 (180)
T d1txga2 81 -TDGVLPVMSR-ILPYLKDQ-YIVLISKGLI 108 (180)
T ss_dssp -GGGHHHHHHH-HTTTCCSC-EEEECCCSEE
T ss_pred -hhhhHHHHHh-hccccccc-eecccccCcc
Confidence 4456655543 44446655 5555667654
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.76 E-value=3.8e-05 Score=73.53 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=82.9
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-H-HHHHHcCCcccCHHHhcc-ccCEEEEeCCCChhccccc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-A-DRARATGVGLVSFEEAIS-TADFISLHMPLTPATSKMF 264 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~-~~a~~~g~~~~~l~ell~-~aD~V~l~~Plt~~t~~li 264 (595)
.+|.||||.|-|+|++|+.+|+.|...|++|++.|.+.. . ......|....+.++++. .||+++-|. ..+.|
T Consensus 35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA-----~~~~I 109 (230)
T d1leha1 35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAVL 109 (230)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCCB
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEecccc-----ccccc
Confidence 469999999999999999999999999999999998752 2 233456777777777775 699999886 57788
Q ss_pred cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+.+....++- .+|+-.+-.++.+.++. +.|.+..|
T Consensus 110 ~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI 144 (230)
T d1leha1 110 NDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGI 144 (230)
T ss_dssp STTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTC
T ss_pred ChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCc
Confidence 8888888874 47777777888776653 44444444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=1.2e-05 Score=71.93 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=64.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCc--------ccCHHHhccccCEEEEeCCCChhcccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVG--------LVSFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~--------~~~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
++|+|||.|.||+.+|..|...|.+|..+++.... ......+.. ..+..+.+..+|+|+++++- .++...
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence 48999999999999999999999999999986532 111111111 12456778899999999994 456655
Q ss_pred ccHHHHhcCCCceEEEeccCC
Q 046427 264 FNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg 284 (595)
+. .....+++++.++.+.-|
T Consensus 80 ~~-~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 80 VK-SLASTLPVTTPILLIHNG 99 (167)
T ss_dssp HH-HHHTTSCTTSCEEEECSS
T ss_pred HH-hhccccCcccEEeeccCc
Confidence 43 234457788888887665
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=9.7e-06 Score=66.53 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=48.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHH--HcCCcc--cC-HHHhccccCEEEEeC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRAR--ATGVGL--VS-FEEAISTADFISLHM 254 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~--~~g~~~--~~-l~ell~~aD~V~l~~ 254 (595)
+++||+|.|+|+|..|+++|+.|...|++|++||.....+... ..+... .. -++.+.+.|+|++.-
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SP 72 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASP 72 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECT
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECC
Confidence 5789999999999999999999999999999999865322111 122221 11 256678889998853
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.70 E-value=7.8e-06 Score=76.19 Aligned_cols=91 Identities=21% Similarity=0.287 Sum_probs=64.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc--------CCc------c-cCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARAT--------GVG------L-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--------g~~------~-~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|||.|.+|.++|..|..-|.+|..|+++... +...+. ++. . .++++++++||+|++++|
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP- 86 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP- 86 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC-
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc-
Confidence 47999999999999999999999999999986521 111111 121 1 268999999999999999
Q ss_pred ChhccccccHHH----HhcCCCceEEEeccCC
Q 046427 257 TPATSKMFNDEA----FFKMKKGVRIVNVARG 284 (595)
Q Consensus 257 t~~t~~li~~~~----l~~mk~gailiN~arg 284 (595)
+...+.++..-. ....+++..+++++.|
T Consensus 87 s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG 118 (189)
T d1n1ea2 87 TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG 118 (189)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence 444555543311 1124567789999876
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.66 E-value=2.1e-05 Score=68.33 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=52.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc--------cCHHHh-ccccCEEEEeCCCChhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL--------VSFEEA-ISTADFISLHMPLTPATS 261 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~--------~~l~el-l~~aD~V~l~~Plt~~t~ 261 (595)
|++.|+|+|++|+.+|+.|...|.+|+++|.+.. .+.+.+.+... ..|+++ +++||.+++++|...++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~ 79 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS 79 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH
Confidence 6789999999999999999999999999998763 23344445422 125555 789999999998665443
|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Nitrosomonas europaea [TaxId: 915]
Probab=97.64 E-value=3.6e-05 Score=60.81 Aligned_cols=70 Identities=17% Similarity=0.280 Sum_probs=58.7
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC--CCcHHHHHHHhcCCCcceEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE--EPSREVLKKIGETPAIEEFV 591 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~--~~~~e~l~~L~~~~~v~~v~ 591 (595)
|++.+..+|+||++++|+.++...|+||.++.++..+..+-.-|.+.++. ..-+.+.++|.++..|.+|.
T Consensus 3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~ 74 (77)
T d2pc6a2 3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLI 74 (77)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEE
Confidence 67778889999999999999999999999999999888888777666654 33347888888888887775
|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=6e-05 Score=59.36 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=56.4
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEFV 591 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v~ 591 (595)
|+|-+..+|+||++++|+.++...++||.++.++..+..+.+-|.+.+... .-+.+.++|.++..|.+|.
T Consensus 2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~ 73 (76)
T d2f1fa1 2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVS 73 (76)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEE
Confidence 567778899999999999999999999999999988877776665555443 2336778888888888775
|
| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Thermotoga maritima [TaxId: 2336]
Probab=97.60 E-value=8.8e-05 Score=58.69 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=59.3
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEc--CCCCcHHHHHHHhcCCCcceEEEE
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV--DEEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~--d~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
.|.|-+...|+||++++|+.++...|+||.++.++..+..+-.-|.+.+ |+..-+.+.++|.++..|.+|.-+
T Consensus 3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dl 77 (78)
T d2fgca2 3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPI 77 (78)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEEC
T ss_pred eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 3677788889999999999999999999999999988877776555444 444455888899999988887643
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=7.7e-05 Score=67.97 Aligned_cols=84 Identities=20% Similarity=0.303 Sum_probs=67.4
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.+++||++.|||-+. +|+.+|..|...|+.|..++.+. .++.+.+++||+|+.+++. .+++
T Consensus 33 ~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t------------~~l~~~~~~aDivi~a~G~----~~~i 96 (170)
T d1a4ia1 33 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------AHLDEEVNKGDILVVATGQ----PEMV 96 (170)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCB
T ss_pred hCcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc------------ccHHHHHhhccchhhcccc----cccc
Confidence 46689999999999976 89999999999999999998643 2466788999999999984 4566
Q ss_pred cHHHHhcCCCceEEEeccCCchhc
Q 046427 265 NDEAFFKMKKGVRIVNVARGGVVD 288 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~vd 288 (595)
..+. .|+|+++||++--.+.|
T Consensus 97 ~~~~---vk~g~iviDvgi~~~~~ 117 (170)
T d1a4ia1 97 KGEW---IKPGAIVIDCGINYVPD 117 (170)
T ss_dssp CGGG---SCTTCEEEECCCBC---
T ss_pred cccc---ccCCCeEeccCcccccc
Confidence 6553 69999999998655444
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=7.4e-05 Score=67.69 Aligned_cols=80 Identities=14% Similarity=0.273 Sum_probs=66.7
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++.+. .++.+.+++||+|+.++.. .+++
T Consensus 31 y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t------------~~l~~~~~~ADivI~a~G~----p~~i 94 (166)
T d1b0aa1 31 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------KNLRHHVENADLLIVAVGK----PGFI 94 (166)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------SCHHHHHHHCSEEEECSCC----TTCB
T ss_pred cCcccccceEEEEeccccccHHHHHHHHHhhcccccccccc------------chhHHHHhhhhHhhhhccC----cccc
Confidence 35689999999999987 99999999999999999987543 2577888999999999973 4667
Q ss_pred cHHHHhcCCCceEEEeccCC
Q 046427 265 NDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg 284 (595)
..+. +|+|+++||++--
T Consensus 95 ~~~~---vk~g~vvIDvGi~ 111 (166)
T d1b0aa1 95 PGDW---IKEGAIVIDVGIN 111 (166)
T ss_dssp CTTT---SCTTCEEEECCCE
T ss_pred cccc---cCCCcEEEecCce
Confidence 6653 6999999999744
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.49 E-value=4.7e-05 Score=69.56 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=66.8
Q ss_pred cceeeecCCEEEEEeCChH-HHHHHHHHhcCCCEEEEECCCCcHHHHHHcCC-------------cccCHHHhccccCEE
Q 046427 185 YVGVSLVGKTLAVMGFGKV-GTEVARRAKGLGMNVIAHDPYAQADRARATGV-------------GLVSFEEAISTADFI 250 (595)
Q Consensus 185 ~~g~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~-------------~~~~l~ell~~aD~V 250 (595)
..|.++.||++.|||-+.+ |+.+|..|...|..|..++............+ ....+.+...++|+|
T Consensus 22 ~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIv 101 (171)
T d1edza1 22 PEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV 101 (171)
T ss_dssp CTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred cccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEE
Confidence 4577899999999999865 99999999999999998875421110000000 011267788899999
Q ss_pred EEeCCCChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 251 SLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 251 ~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
+.++|... ..+..+ ..|+|+++||++-..
T Consensus 102 IsavG~p~---~~i~~d---~ik~GavvIDvGi~~ 130 (171)
T d1edza1 102 ITGVPSEN---YKFPTE---YIKEGAVCINFACTK 130 (171)
T ss_dssp EECCCCTT---CCBCTT---TSCTTEEEEECSSSC
T ss_pred EEccCCCc---cccChh---hcccCceEeeccccc
Confidence 99998422 124443 359999999998653
|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: AF1403 N-terminal domain-like domain: Hypothetical protein AF1403, N-terminal domain species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.49 E-value=0.00016 Score=57.19 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=48.9
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCC-CcEEEEEEc--CCCCcHHHHHHHhcCCCcceEEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQ-KQAVMTIGV--DEEPSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g-~~al~vi~~--d~~~~~e~l~~L~~~~~v~~v~~ 592 (595)
.|-+...|+||+++.|++.++++++||..++..-...| ....+.+++ .+.--+.++++|+++|+|.+|..
T Consensus 3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver 75 (77)
T d1y7pa2 3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE 75 (77)
T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence 35677889999999999999999999999987533332 223444544 33224589999999999999863
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.17 E-value=0.00022 Score=64.31 Aligned_cols=89 Identities=22% Similarity=0.283 Sum_probs=65.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-------C-HHHhccccCEEEEeCCCChhcc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-------S-FEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-------~-l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.|.+|.|+|.|.+|...++.++.+|++|++.|++. ..+.++++|...+ + .+......|+++.|+......
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~- 105 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI- 105 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC-
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc-
Confidence 47899999999999999999999999999999876 5677888886421 1 334455678888877632211
Q ss_pred ccccHHHHhcCCCceEEEecc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~a 282 (595)
.+ ...++.++++..++.++
T Consensus 106 -~~-~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 106 -DF-NIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp -CT-TTGGGGEEEEEEEEECC
T ss_pred -hH-HHHHHHhhccceEEEec
Confidence 11 23566688888888875
|
| >d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.14 E-value=0.0004 Score=53.85 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=46.9
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhc
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGE 583 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~ 583 (595)
+-+.-+|+||.++++.+.|++++|||.+|..+.. ++.+++++.+|++ +.+.+.|++
T Consensus 2 iaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~--~~~~~~vl~vdd~--~~a~~~L~~ 57 (71)
T d2f06a1 2 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN--NNVANVVIRPSNM--DKCIEVLKE 57 (71)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE--TTEEEEEEEESCH--HHHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcC--CCcEEEEEEECCH--HHHHHHHHH
Confidence 4467799999999999999999999999999865 3679999999853 567777765
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00044 Score=61.92 Aligned_cols=63 Identities=11% Similarity=0.168 Sum_probs=48.2
Q ss_pred EEEEEeCChHHHH-HHHHHhcC-CCEEEE-ECCCCc--HHHHHHcCCccc-CHHHhccccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTE-VARRAKGL-GMNVIA-HDPYAQ--ADRARATGVGLV-SFEEAISTADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~-vA~~l~~~-G~~V~~-~d~~~~--~~~a~~~g~~~~-~l~ell~~aD~V~l~~Pl 256 (595)
+|||||+|.+|+. ....++.. ++++++ +|++.. ...+...++... ++++++++.|+|++|+|.
T Consensus 3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~ 71 (164)
T d1tlta1 3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSST 71 (164)
T ss_dssp EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCT
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccc
Confidence 7999999999986 46667655 678764 788763 334556677654 789999999999999994
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.09 E-value=0.00031 Score=62.70 Aligned_cols=87 Identities=11% Similarity=0.167 Sum_probs=58.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH--HHHcCCc---------ccCHHHhccccCEEEEeCCCChh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR--ARATGVG---------LVSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~g~~---------~~~l~ell~~aD~V~l~~Plt~~ 259 (595)
.+|+|.|||.|.||+.+|+.|...|.+|+++|++..... +...+.. ...+++.+...|+++.++|...
T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~- 79 (182)
T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF- 79 (182)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGG-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchh-
Confidence 368999999999999999999999999999999864322 2222211 1135677888899988887432
Q ss_pred ccccccHHHHhcCCCceEEEecc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a 282 (595)
.. .+ ....++.++.+++.+
T Consensus 80 ~~-~~---~~~~~~~~~~~~~~~ 98 (182)
T d1e5qa1 80 HA-TV---IKSAIRQKKHVVTTS 98 (182)
T ss_dssp HH-HH---HHHHHHHTCEEECSS
T ss_pred hh-HH---HHHHHhhccceeecc
Confidence 11 11 112234556677665
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.00088 Score=60.18 Aligned_cols=88 Identities=24% Similarity=0.326 Sum_probs=64.3
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc------CHHHhc--------cccCEEEEeC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV------SFEEAI--------STADFISLHM 254 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~------~l~ell--------~~aD~V~l~~ 254 (595)
.|.+|.|+|.|.||...++.++.+|. +|++.|++. ..+.+++.|...+ +..+.. ...|+|+-|+
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence 36789999999999999999999998 899999887 4567888887421 233222 2478888888
Q ss_pred CCChhccccccHHHHhcCCCceEEEeccC
Q 046427 255 PLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 255 Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
+. +.+. +..++.++++..++.++-
T Consensus 106 G~-~~~~----~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 106 GA-EASI----QAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp CC-HHHH----HHHHHHSCTTCEEEECSC
T ss_pred CC-chhH----HHHHHHhcCCCEEEEEec
Confidence 73 3221 345666888888877763
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=97.01 E-value=0.0011 Score=64.08 Aligned_cols=109 Identities=28% Similarity=0.319 Sum_probs=69.4
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE--------ECCCC-cHHH-------------------HHHcCCccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA--------HDPYA-QADR-------------------ARATGVGLV 238 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~-------------------a~~~g~~~~ 238 (595)
+.+|.|||+.|=|+|++|+.+|+.|...|++|++ ||+.- +.+. +...+.+..
T Consensus 31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (255)
T d1bgva1 31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF 110 (255)
T ss_dssp TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee
Confidence 3469999999999999999999999999999986 44432 1111 111122233
Q ss_pred CHHHhc-cccCEEEEeCCCChhccccccHHHHhcCCC-ce-EEEeccCCchhcHHHHHHHHhcCCe
Q 046427 239 SFEEAI-STADFISLHMPLTPATSKMFNDEAFFKMKK-GV-RIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 239 ~l~ell-~~aD~V~l~~Plt~~t~~li~~~~l~~mk~-ga-iliN~arg~~vd~~aL~~aL~~g~i 301 (595)
+.++++ ..||+++-|. +.+.|+.+....++. ++ +|+-.+-+++-.+ +.-..|+++.|
T Consensus 111 ~~~~~~~~~~DiliPcA-----~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI 170 (255)
T d1bgva1 111 PGEKPWGQKVDIIMPCA-----TQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNM 170 (255)
T ss_dssp ETCCGGGSCCSEEECCS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTC
T ss_pred chhhcccccccEEeecc-----ccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCC
Confidence 334443 3688887664 567777777766653 34 6777777776443 33334554444
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.97 E-value=0.00092 Score=57.56 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=56.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHH-HHcCCccc-----C---HHHh-ccccCEEEEeCCCChhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRA-RATGVGLV-----S---FEEA-ISTADFISLHMPLTPATS 261 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a-~~~g~~~~-----~---l~el-l~~aD~V~l~~Plt~~t~ 261 (595)
++|.|+|+|++|+.+|+.|...|.+|++.|.++. .+.. .+.++..+ + |+++ ++++|.++.+++..+ .
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~--~ 78 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE--V 78 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH--H
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH--H
Confidence 4789999999999999999999999999998763 2222 23454321 2 4444 688999988887433 3
Q ss_pred ccccHHHHhcCCCceEEE
Q 046427 262 KMFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 262 ~li~~~~l~~mk~gaili 279 (595)
+++-....+.+.+..+++
T Consensus 79 N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 79 NLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp HHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHcCCceEEE
Confidence 333333444455554443
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=96.96 E-value=0.0026 Score=60.87 Aligned_cols=105 Identities=22% Similarity=0.246 Sum_probs=73.6
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC---------cHHHH----------------HHcCCccc-CHHH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA---------QADRA----------------RATGVGLV-SFEE 242 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~---------~~~~a----------------~~~g~~~~-~l~e 242 (595)
.|.||||.|-|+|++|+.+|+.|...|++|++.+... ..+.. ...+.+.. +.++
T Consensus 28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (242)
T d1v9la1 28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA 107 (242)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence 6999999999999999999999999999999764321 11111 11222222 3455
Q ss_pred hcc-ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 243 AIS-TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 243 ll~-~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
++. .||+++-|. ..+.|+.+...+|+- .+|+-.+-+.+ ..++ .+.|.+..|
T Consensus 108 i~~~~~DIliPcA-----~~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI 159 (242)
T d1v9la1 108 IFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGV 159 (242)
T ss_dssp GGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTC
T ss_pred hccccccEEeecc-----hhccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCe
Confidence 664 799999986 466788887777764 57777888886 5555 366666666
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.91 E-value=0.0014 Score=58.50 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=38.7
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|.+|.|+|.|.||...++.++.+|.+|+++|++. ..+.+++.|.
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga 71 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA 71 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999876 4456677665
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.90 E-value=0.00077 Score=61.25 Aligned_cols=45 Identities=31% Similarity=0.378 Sum_probs=38.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|.+|.|+|.|.||...++.++.+|. +|++.|++. ..+.++++|.
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence 58899999999999999999999998 899999876 3456666664
|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: SP0238-like domain: UPF0237 protein SP0238 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.88 E-value=0.00091 Score=53.14 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=43.3
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcH-HHHHHHhcC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSR-EVLKKIGET 584 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~-e~l~~L~~~ 584 (595)
.+-+..+|+||+++.|++.|.++|+||.+++-.....--...+.++++...+. ++.++|.++
T Consensus 4 vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~~~~l~~~l~~l 66 (83)
T d1zpva1 4 IITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAF 66 (83)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCCHHHHHHHHHHH
Confidence 45567899999999999999999999999987644322222334556555543 555555443
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0011 Score=59.87 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=61.4
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH--HHHc---C-CcccCHHHh-ccccCEEEEeCCCChh
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR--ARAT---G-VGLVSFEEA-ISTADFISLHMPLTPA 259 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~---g-~~~~~l~el-l~~aD~V~l~~Plt~~ 259 (595)
+..+.||++.|+|.|-.+++++..|...|.+|..++|+..... +... + +...++++. ..++|+|+.|+|..-.
T Consensus 13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~ 92 (170)
T d1nyta1 13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS 92 (170)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc
Confidence 4578999999999999999999999999999999998763221 1111 1 223344443 4578999999986432
Q ss_pred ccccccHHHHhcCCCceEEEecc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a 282 (595)
.. .....+..++++.++.|+-
T Consensus 93 ~~--~~~~~~~~~~~~~~v~D~v 113 (170)
T d1nyta1 93 GD--IPAIPSSLIHPGIYCYDMF 113 (170)
T ss_dssp TC--CCCCCGGGCCTTCEEEESC
T ss_pred cC--CCCCcHHHhccCcEEEEee
Confidence 11 1111223355555555554
|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.84 E-value=0.0018 Score=49.94 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=47.9
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETP 585 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~ 585 (595)
.|-+.-+|+||.+++++.+|+++||||..+.++... +.++..+-+|. |+++.+.|++.-
T Consensus 5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~--~~~i~Riiv~~--~e~a~~~L~~~g 63 (70)
T d2f06a2 5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENA--DFGILRGIVSD--PDKAYKALKDNH 63 (70)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECS--SCEEEEEEESC--HHHHHHHHHHTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecC--CCCEEEEEECC--hHHHHHHHHHCC
Confidence 355677899999999999999999999999998654 45788887774 477888887643
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.81 E-value=0.0042 Score=59.24 Aligned_cols=105 Identities=28% Similarity=0.377 Sum_probs=71.9
Q ss_pred eecCCEEEEEeCChHHHHHHHHHh-cCCCEEEEE-CCCC--------cHHHH----HHc-------CCcccCHHHhcc-c
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAK-GLGMNVIAH-DPYA--------QADRA----RAT-------GVGLVSFEEAIS-T 246 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~-~~G~~V~~~-d~~~--------~~~~a----~~~-------g~~~~~l~ell~-~ 246 (595)
.|.||||.|-|+|++|+.+|+.|. .+|++|++. |.+. ..+.. .+. +.+.++.++++. +
T Consensus 29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 108 (239)
T d1gtma1 29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE 108 (239)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence 499999999999999999999885 689999875 3321 11111 111 233456677764 7
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
||+++-|. +.+.|+.+....++- .+|+-.+-+++- .++ .+.|.+..|
T Consensus 109 ~DIl~PcA-----~~~~I~~~~a~~i~a-k~I~e~AN~p~t-~ea-~~~L~~rgI 155 (239)
T d1gtma1 109 VDVLAPAA-----IEEVITKKNADNIKA-KIVAEVANGPVT-PEA-DEILFEKGI 155 (239)
T ss_dssp CSEEEECS-----CSCCBCTTGGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTC
T ss_pred ccEEeecc-----ccccccHHHHHhccc-cEEEecCCCCCC-HHH-HHHHHHCCC
Confidence 99999886 467788888877764 477777788864 344 355555545
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.78 E-value=0.0018 Score=57.55 Aligned_cols=93 Identities=22% Similarity=0.245 Sum_probs=60.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHH--HHH-------cCCc-----ccCHHHhccccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADR--ARA-------TGVG-----LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~--a~~-------~g~~-----~~~l~ell~~aD~V~l~~P 255 (595)
+-++|+|||.|.+|+.+|..+...++ +++.||.+..... +.. .+.. ..+.++.+++||+|++++.
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag 85 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence 35789999999999999988876564 8999998764221 111 1111 1246788999999999884
Q ss_pred CC--hh------cccc-c--cH-------HHHhcCCCceEEEeccC
Q 046427 256 LT--PA------TSKM-F--ND-------EAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 256 lt--~~------t~~l-i--~~-------~~l~~mk~gailiN~ar 283 (595)
.. +. ++.- + |. +.+....|.+++++++-
T Consensus 86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN 131 (154)
T d1pzga1 86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN 131 (154)
T ss_dssp CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 32 11 2211 1 11 12444578899999863
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.77 E-value=0.0006 Score=59.36 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=62.3
Q ss_pred ecCCEEEEEeCC----------hHHHHHHHHHhcCCCEEEEECCCCcHHH--------HH----HcCCc-ccCHHHhccc
Q 046427 190 LVGKTLAVMGFG----------KVGTEVARRAKGLGMNVIAHDPYAQADR--------AR----ATGVG-LVSFEEAIST 246 (595)
Q Consensus 190 l~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~--------a~----~~g~~-~~~l~ell~~ 246 (595)
+.+++|||+|+- .-...+++.|...|.+|.+|||+.+... .. ..+.. ..+++++++.
T Consensus 11 ~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~ 90 (136)
T d1mv8a3 11 HDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVAS 90 (136)
T ss_dssp SSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHH
T ss_pred cCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhh
Confidence 678999999984 3677899999999999999999643211 00 11122 2489999999
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
||+|+++++ .++-+ +....++++.+|+|+
T Consensus 91 ~D~ivi~t~-h~~f~-----~l~~~~~~~~~I~D~ 119 (136)
T d1mv8a3 91 SDVLVLGNG-DELFV-----DLVNKTPSGKKLVDL 119 (136)
T ss_dssp CSEEEECSC-CGGGH-----HHHHSCCTTCEEEES
T ss_pred ceEEEEEeC-CHHHH-----HHHHHhcCCCEEEEC
Confidence 999999998 34332 234457778899997
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=96.76 E-value=0.00063 Score=61.43 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=55.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEEE-ECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVIA-HDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
.++||||+|.||+.+++.++.. ++++++ +|++... ....++. ..++++++.+.|+|++|+|... .. .-..
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~--~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~--h~---~~a~ 76 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTKTPVFDVADVDKHADDVDVLFLCMGSAT--DI---PEQA 76 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSSSCEEEGGGGGGTTTTCSEEEECSCTTT--HH---HHHH
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc--ccccccccchhhhhhccccceEEEeCCCcc--cH---HHHH
Confidence 3799999999999999999976 677765 5665421 1122222 3367888899999999999543 21 1223
Q ss_pred hcCCCceEEEecc
Q 046427 270 FKMKKGVRIVNVA 282 (595)
Q Consensus 270 ~~mk~gailiN~a 282 (595)
..++.|.-+|.+.
T Consensus 77 ~aL~aG~~vv~~~ 89 (170)
T d1f06a1 77 PKFAQFACTVDTY 89 (170)
T ss_dssp HHHTTTSEEECCC
T ss_pred HHHHCCCcEEEec
Confidence 3467777666554
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.75 E-value=0.0025 Score=60.61 Aligned_cols=107 Identities=24% Similarity=0.269 Sum_probs=75.4
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHh-cCCCEEEEEC--------CCC-cHHH---H-HHc-------CCcccCHHHhcc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAK-GLGMNVIAHD--------PYA-QADR---A-RAT-------GVGLVSFEEAIS 245 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d--------~~~-~~~~---a-~~~-------g~~~~~l~ell~ 245 (595)
+.++.|+|+.|-|+|++|+.+|+.|. .+|++|++.+ +.- .... . ... +.+..+.++++.
T Consensus 26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (234)
T d1b26a1 26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE 105 (234)
T ss_dssp TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence 45689999999999999999999995 7899999754 321 1111 1 111 123346777877
Q ss_pred -ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 246 -TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 246 -~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.||+++-|. ..+.|+.+...+++- .+|+-.+-+.+- .++ .+.|.+..|
T Consensus 106 ~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI 154 (234)
T d1b26a1 106 LDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGI 154 (234)
T ss_dssp SCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTC
T ss_pred cccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCe
Confidence 899998875 567899999998885 477788888864 344 355655555
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=96.66 E-value=0.0017 Score=58.11 Aligned_cols=87 Identities=22% Similarity=0.361 Sum_probs=59.5
Q ss_pred EEEEEeCChHHHH-HHHHHhcCC-CEEEE-ECCCCc---HHHHHHcCCccc--CHHHhc-----cccCEEEEeCCCChhc
Q 046427 194 TLAVMGFGKVGTE-VARRAKGLG-MNVIA-HDPYAQ---ADRARATGVGLV--SFEEAI-----STADFISLHMPLTPAT 260 (595)
Q Consensus 194 tvGIIGlG~IG~~-vA~~l~~~G-~~V~~-~d~~~~---~~~a~~~g~~~~--~l~ell-----~~aD~V~l~~Plt~~t 260 (595)
++||||.|.||+. +.+.++.+. .++.+ .|++.. ...+++.|+... ++++++ .+.|+|+.++|-..
T Consensus 6 rvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~-- 83 (157)
T d1nvmb1 6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA-- 83 (157)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH--
T ss_pred EEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchh--
Confidence 7999999999986 567777664 46655 476542 245677787543 355543 46899999998322
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
|.-.+..+...+.|+++||-+.
T Consensus 84 -h~~~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 84 -HVQNEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp -HHHHHHHHHHHCTTCEEEECST
T ss_pred -HHHhHHHHHHHHcCCEEEEccc
Confidence 2223344556799999999885
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.0014 Score=58.63 Aligned_cols=88 Identities=23% Similarity=0.331 Sum_probs=62.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc----C---HHHhccccCEEEEeCCCChhccc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV----S---FEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~----~---l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.|.+|.|+|.|.+|...++.++.+|+++++.|... ..+.++++|...+ + .....+..|+++-++.... +.
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~-~~- 107 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH-NL- 107 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC-CH-
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch-hH-
Confidence 47899999999999999999999999999998766 4466778886422 1 2233455788877776322 11
Q ss_pred cccHHHHhcCCCceEEEeccC
Q 046427 263 MFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~ar 283 (595)
...+..++++..++.++.
T Consensus 108 ---~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 108 ---DDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ---HHHHTTEEEEEEEEECCC
T ss_pred ---HHHHHHHhcCCEEEEecc
Confidence 234556777777776653
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.66 E-value=0.0011 Score=58.69 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=57.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHHHHHc---------CCc---ccCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADRARAT---------GVG---LVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~---------g~~---~~~l~ell~~aD~V~l~~Plt~ 258 (595)
|+|+|||.|.+|..+|-.+...| -++..||.+.....+..+ +.. ..+-.+.+++||+|+++.....
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~ 81 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK 81 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence 78999999999999999887655 489999986532111111 111 1122356899999999876422
Q ss_pred -------hccc-cc--cH-------HHHhcCCCceEEEeccC
Q 046427 259 -------ATSK-MF--ND-------EAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 259 -------~t~~-li--~~-------~~l~~mk~gailiN~ar 283 (595)
.++. ++ |. ..+....|++++++++-
T Consensus 82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN 123 (146)
T d1hyha1 82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN 123 (146)
T ss_dssp GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence 1121 11 11 23445678899999853
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.00053 Score=54.10 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=32.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ 226 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~ 226 (595)
|||||+|-|..|+.++..++.+|++++.+||...
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 6999999999999999999999999999999763
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.61 E-value=0.0024 Score=55.81 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=58.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHHHH--Hc---------CCc--ccCHHHhccccCEEEEeC--C
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADRAR--AT---------GVG--LVSFEEAISTADFISLHM--P 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~--~~---------g~~--~~~l~ell~~aD~V~l~~--P 255 (595)
.+|+|||.|.+|+.+|..+...| -++..||.+.....+. .. ... ..+..+.+++||+|+++. |
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~ 80 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence 37999999999999999998766 4899999876432211 11 111 124567889999999986 3
Q ss_pred CCh-hccccc---c-------HHHHhcCCCceEEEeccC
Q 046427 256 LTP-ATSKMF---N-------DEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 256 lt~-~t~~li---~-------~~~l~~mk~gailiN~ar 283 (595)
..+ +++.-+ | .+.+....|.+++++++-
T Consensus 81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1guza1 81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence 333 121111 1 123444568889999854
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.60 E-value=0.0016 Score=58.22 Aligned_cols=103 Identities=10% Similarity=0.152 Sum_probs=61.6
Q ss_pred EEEEEeCChHHHH-HHHHHhcC-CCEEEEECCCCc--HHHHHHcCCc--ccCHHHhcc-ccCEEEEeCCCChhccccccH
Q 046427 194 TLAVMGFGKVGTE-VARRAKGL-GMNVIAHDPYAQ--ADRARATGVG--LVSFEEAIS-TADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 194 tvGIIGlG~IG~~-vA~~l~~~-G~~V~~~d~~~~--~~~a~~~g~~--~~~l~ell~-~aD~V~l~~Plt~~t~~li~~ 266 (595)
++||||+|.+|+. ....++.+ +.++.++|++.. ...+...++. +.+.+++++ +.|+|++|+|... ..-+-.
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~--H~~~~~ 80 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDV--HSTLAA 80 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGG--HHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccc--cccccc
Confidence 7999999999976 56677655 578888998763 2334455653 347788875 5799999998432 222222
Q ss_pred HHHhcCCCceEEEec-cCCchhcHHHHHHHHhcCC
Q 046427 267 EAFFKMKKGVRIVNV-ARGGVVDEEALVRALDSGI 300 (595)
Q Consensus 267 ~~l~~mk~gailiN~-arg~~vd~~aL~~aL~~g~ 300 (595)
..++ .+.. +++.- .--.+-+.+.|.++.++..
T Consensus 81 ~al~-~gk~-V~~EKP~~~~~~e~~~l~~~a~~~~ 113 (167)
T d1xeaa1 81 FFLH-LGIP-TFVDKPLAASAQECENLYELAEKHH 113 (167)
T ss_dssp HHHH-TTCC-EEEESCSCSSHHHHHHHHHHHHHTT
T ss_pred cccc-cccc-cccCCCCcCCHHHHHHHHHHHHHcC
Confidence 2333 2222 44432 1122234566676655443
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.58 E-value=0.0028 Score=62.11 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=72.6
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEEC--------CCC-cHHHHH---H-cCC------cccCHHHhcc-c
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD--------PYA-QADRAR---A-TGV------GLVSFEEAIS-T 246 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d--------~~~-~~~~a~---~-~g~------~~~~l~ell~-~ 246 (595)
...|.||||.|-|+|++|+.+|+.|...|++|++.+ +.- +.+... . .+- ...+-++++. .
T Consensus 31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (293)
T d1hwxa1 31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVD 110 (293)
T ss_dssp CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCC
Confidence 347999999999999999999999999999999864 221 222111 1 111 1123345555 8
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
||+++-|. +.+.|+.+....++- .+|+-.+-+++ ..++ .+.|.+..|
T Consensus 111 ~DIliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~-t~eA-~~~L~~~gI 157 (293)
T d1hwxa1 111 CDILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPT-TPQA-DKIFLERNI 157 (293)
T ss_dssp CSEEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTC
T ss_pred ccEEeecc-----ccccccHHHHHHHhh-CEEeccCCCCC-Ccch-HHHHHHCCC
Confidence 99998875 567788888887764 47778888886 4444 355555544
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.57 E-value=0.0041 Score=56.25 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=62.8
Q ss_pred EEEEEeCChHHHHHHHHHhcC-CCEEEE-ECCCCc--HHHHHHcCCc-----ccCHHHhcc--ccCEEEEeCCCChhccc
Q 046427 194 TLAVMGFGKVGTEVARRAKGL-GMNVIA-HDPYAQ--ADRARATGVG-----LVSFEEAIS--TADFISLHMPLTPATSK 262 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~--~~~a~~~g~~-----~~~l~ell~--~aD~V~l~~Plt~~t~~ 262 (595)
++||||+|.+|+..++.++.. +++|.+ +|++.. ...+.+.++. +.+++++++ +.|+|++++|..... .
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~-~ 81 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV-E 81 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH-H
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhc-c
Confidence 799999999999999999865 678875 687653 2234455542 348999984 579999999843221 1
Q ss_pred cccHHHHhcCCCceE-EEec-cCCchhcHHHHHHHHhcCCe
Q 046427 263 MFNDEAFFKMKKGVR-IVNV-ARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 263 li~~~~l~~mk~gai-liN~-arg~~vd~~aL~~aL~~g~i 301 (595)
+ ....|+.|.- ++.- .--.+-+.+.|.+..++..+
T Consensus 82 -~---~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~ 118 (184)
T d1ydwa1 82 -W---AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV 118 (184)
T ss_dssp -H---HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred -h---hhhhhhccceeecccccccCHHHHHHHHHHHHhhCC
Confidence 1 2222444533 3321 11122234566666666544
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.53 E-value=0.0044 Score=54.08 Aligned_cols=90 Identities=14% Similarity=0.224 Sum_probs=56.8
Q ss_pred CEEEEEeCChHHHHHHHHHhc--CCCEEEEECCCCcHHHHHHcC------C----c-ccCHHHhccccCEEEEeCCC--C
Q 046427 193 KTLAVMGFGKVGTEVARRAKG--LGMNVIAHDPYAQADRARATG------V----G-LVSFEEAISTADFISLHMPL--T 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~g------~----~-~~~l~ell~~aD~V~l~~Pl--t 257 (595)
.+|+|||.|.+|..+|..+.. +..++..||.+........+. + . ..+..+.+++||+|+++.-. .
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 80 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK 80 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence 479999999999999998774 446999999765322111111 1 1 11345668999999998642 2
Q ss_pred h-hcc-ccc--c-------HHHHhcCCCceEEEecc
Q 046427 258 P-ATS-KMF--N-------DEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~-~t~-~li--~-------~~~l~~mk~gailiN~a 282 (595)
+ +++ .++ | .+.+....|++++++++
T Consensus 81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 1 111 111 1 12345567899999986
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.0015 Score=55.02 Aligned_cols=37 Identities=38% Similarity=0.615 Sum_probs=33.7
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ 226 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~ 226 (595)
..+.||||+|-|..|+.+|..++.+|++++++|++..
T Consensus 9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 4567899999999999999999999999999999763
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.52 E-value=0.0016 Score=57.21 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=62.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcH--HHHHHc--CCc-------ccCHHHhccccCEEEEeCCCCh-
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQA--DRARAT--GVG-------LVSFEEAISTADFISLHMPLTP- 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~--~~a~~~--g~~-------~~~l~ell~~aD~V~l~~Plt~- 258 (595)
++|+|||.|.+|+.+|-.+...+ -++..||..... ..+.++ ... ...-.+.+++||+|+++.-...
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 81 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK 81 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence 47999999999999999887655 489999976532 222221 111 1123466899999999854222
Q ss_pred --hccc-cc--cH-------HHHhcCCCceEEEeccCCchhc--HHHHHHH--HhcCCeeE
Q 046427 259 --ATSK-MF--ND-------EAFFKMKKGVRIVNVARGGVVD--EEALVRA--LDSGIISQ 303 (595)
Q Consensus 259 --~t~~-li--~~-------~~l~~mk~gailiN~arg~~vd--~~aL~~a--L~~g~i~g 303 (595)
+++. ++ |. +.+....|.+++++++- .+| ...+.+. +..+++.|
T Consensus 82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN--Pvdv~t~~~~k~sg~p~~rViG 140 (142)
T d1y6ja1 82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN--PVDIITYMIQKWSGLPVGKVIG 140 (142)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS--SHHHHHHHHHHHHTCCTTTEEE
T ss_pred cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC--hHHHHHHHHHHHHCCCccceec
Confidence 1111 11 11 12444678889999854 333 2223332 45556655
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.51 E-value=0.0018 Score=58.53 Aligned_cols=87 Identities=23% Similarity=0.272 Sum_probs=58.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCcc-c-----CHHH-hcc-----ccCEEEEeCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGL-V-----SFEE-AIS-----TADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~-~-----~l~e-ll~-----~aD~V~l~~Pl 256 (595)
.|.+|.|+|.|.||...++.++.+|. +|++.|++. ..+.++++|... + ++.+ +.+ ..|+|+-|++.
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~ 106 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG 106 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence 47789999999999999999999997 799999876 456677787532 1 1222 211 16777776653
Q ss_pred ChhccccccHHHHhcCCCceEEEecc
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.. + + ...+..++++..++-++
T Consensus 107 ~~-~---~-~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 107 SE-T---L-SQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TT-H---H-HHHHHHEEEEEEEEECC
T ss_pred HH-H---H-HHHHHHHhcCCEEEEEe
Confidence 21 1 1 23345566666666665
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.51 E-value=0.0016 Score=57.56 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=56.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHH--HHHc-------CCc--c-cCHHHhccccCEEEEeCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADR--ARAT-------GVG--L-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~-------g~~--~-~~l~ell~~aD~V~l~~Pl 256 (595)
..++|+|||.|.+|..+|..+...| -++..||....... +.++ +.. . .+.+ .+++||+|+++...
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~ 82 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA 82 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc
Confidence 4579999999999999999988655 59999998653211 1111 111 1 1444 46899999998653
Q ss_pred Ch---hcccc-c--c-------HHHHhcCCCceEEEeccC
Q 046427 257 TP---ATSKM-F--N-------DEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 257 t~---~t~~l-i--~-------~~~l~~mk~gailiN~ar 283 (595)
.. +++.- + | .+.+..-.|.+++++++-
T Consensus 83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN 122 (146)
T d1ez4a1 83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (146)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence 21 11111 1 1 123445677888888863
|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=96.50 E-value=0.00082 Score=53.89 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=37.2
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD 570 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d 570 (595)
..+-+.-+|+||+++.|++.|.++|+||.+++..+....-..++.++.+
T Consensus 6 ~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~ 54 (86)
T d1u8sa1 6 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS 54 (86)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC
Confidence 3445567999999999999999999999999887654433344455554
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.46 E-value=0.0028 Score=63.65 Aligned_cols=88 Identities=20% Similarity=0.317 Sum_probs=65.2
Q ss_pred CCEEEEEeCChHHHHHHHHHh-cCCC-EEEEECCCCcH--HHHHH----cCCcc--c-CHHHhccccCEEEEeCCCChhc
Q 046427 192 GKTLAVMGFGKVGTEVARRAK-GLGM-NVIAHDPYAQA--DRARA----TGVGL--V-SFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~~----~g~~~--~-~l~ell~~aD~V~l~~Plt~~t 260 (595)
-++++|||.|..++.-++.+. -++. +|.+||++... ..+.+ .|+.. + +++++++.||+|++|++ ++.+
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~ 206 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAY 206 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSE
T ss_pred CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCC
Confidence 368999999999998888765 5664 79999997632 22222 24432 3 79999999999999997 4445
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
.-++..+ .+|||+.|..+|.
T Consensus 207 ~Pv~~~~---~l~pG~hI~aiGs 226 (340)
T d1x7da_ 207 ATIITPD---MLEPGMHLNAVGG 226 (340)
T ss_dssp EEEECGG---GCCTTCEEEECSC
T ss_pred Ccccchh---hcCCCCEEeeccc
Confidence 6677654 4799999888864
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0039 Score=56.58 Aligned_cols=71 Identities=23% Similarity=0.405 Sum_probs=52.2
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCc-HHHH----HHc----CC--c---c---cCHHHhccccC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQ-ADRA----RAT----GV--G---L---VSFEEAISTAD 248 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a----~~~----g~--~---~---~~l~ell~~aD 248 (595)
+.++.||++.|+|.|-.|++++..+...|. ++..++++.. .+.+ .+. +. . . .++.+.+.++|
T Consensus 13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 92 (182)
T d1vi2a1 13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD 92 (182)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence 557999999999999999999999998887 7888888763 2221 111 11 1 1 12456678999
Q ss_pred EEEEeCCCC
Q 046427 249 FISLHMPLT 257 (595)
Q Consensus 249 ~V~l~~Plt 257 (595)
+|+.|+|..
T Consensus 93 iiIN~Tp~G 101 (182)
T d1vi2a1 93 ILTNGTKVG 101 (182)
T ss_dssp EEEECSSTT
T ss_pred eeccccCCc
Confidence 999999964
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.45 E-value=0.0037 Score=55.30 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=58.5
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCcHHH--HHHc-------CCc----ccCHHHhccccCEEEEeCCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQADR--ARAT-------GVG----LVSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~--a~~~-------g~~----~~~l~ell~~aD~V~l~~Plt 257 (595)
..+|+|||.|.+|+.+|..+...+ .++..||....... +.++ +.. ..+..+.+++||+|+++.-..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~ 82 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT 82 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence 358999999999999998877555 38999998663321 1111 111 123457789999999987632
Q ss_pred hh---c-----cc-cc--cHH-------HHhcCCCceEEEeccC
Q 046427 258 PA---T-----SK-MF--NDE-------AFFKMKKGVRIVNVAR 283 (595)
Q Consensus 258 ~~---t-----~~-li--~~~-------~l~~mk~gailiN~ar 283 (595)
.. + +. ++ |.. .+..-.|++++++++-
T Consensus 83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtN 126 (150)
T d1t2da1 83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 126 (150)
T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 21 1 21 11 111 2444568999999864
|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=96.41 E-value=0.0033 Score=50.94 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=29.4
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeee
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGR 556 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r 556 (595)
+.+..+||||+++.|++.|+++++||..++...
T Consensus 9 v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~ 41 (93)
T d1u8sa2 9 VYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT 41 (93)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCchhhhccc
Confidence 456789999999999999999999999998743
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=96.35 E-value=0.0026 Score=60.73 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=57.8
Q ss_pred cCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCee
Q 046427 233 TGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIIS 302 (595)
Q Consensus 233 ~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ 302 (595)
.|+..+ +..|++++||+|++|+|..+.+..++ ++....+++|++++|++.........+.+.++...+.
T Consensus 127 ~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~ 196 (242)
T d2b0ja2 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN 196 (242)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred CCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence 466554 78999999999999999777677777 5677889999999999999887888888888876663
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.27 E-value=0.0034 Score=55.74 Aligned_cols=46 Identities=28% Similarity=0.450 Sum_probs=39.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~ 236 (595)
.|.+|.|+|.|.+|...++.++.+|.+|++.|++. ..+.+++.|..
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~ 73 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS 73 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc
Confidence 37799999999999999999999999999999876 44667777753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.27 E-value=0.0031 Score=55.83 Aligned_cols=87 Identities=24% Similarity=0.373 Sum_probs=60.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc------C----HHHhccccCEEEEeCCCChh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV------S----FEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------~----l~ell~~aD~V~l~~Plt~~ 259 (595)
.|.+|.|+|.|.||...++.++..|.+|++.+.+. ..+.+++.|+..+ + +.+.....|.++.+.+ .++
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~ 105 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP 105 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence 47899999999999999999999999999999876 4466777776422 1 2333445566666554 232
Q ss_pred ccccccHHHHhcCCCceEEEecc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a 282 (595)
+. ...+..++++..++.++
T Consensus 106 ~~----~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 106 AF----QSAYNSIRRGGACVLVG 124 (168)
T ss_dssp HH----HHHHHHEEEEEEEEECC
T ss_pred HH----HHHHHHhccCCceEecc
Confidence 21 34556677777777775
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.25 E-value=0.004 Score=54.49 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=54.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHH--HHc-------C--Cc--ccCHHHhccccCEEEEeCCC--
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRA--RAT-------G--VG--LVSFEEAISTADFISLHMPL-- 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a--~~~-------g--~~--~~~l~ell~~aD~V~l~~Pl-- 256 (595)
++|+|||.|.+|.++|-.+...+. +++.+|........ .+. + .. ..+-.+.+++||+|+++...
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~~ 81 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAPR 81 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeeccC
Confidence 689999999999999988875554 89999987643221 111 1 11 11223457899999999853
Q ss_pred Ch-hcc-ccc--cH-------HHHhcCCCceEEEecc
Q 046427 257 TP-ATS-KMF--ND-------EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 257 t~-~t~-~li--~~-------~~l~~mk~gailiN~a 282 (595)
.+ +++ +++ |. ..+..-.|.++++.++
T Consensus 82 ~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 82 KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp --------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 22 122 111 11 1234456788888875
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.25 E-value=0.0037 Score=57.14 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=36.8
Q ss_pred ceeeecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 186 VGVSLVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 186 ~g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|.+|+||++.|.| -|-||+.+|+.+...|++|+..+++.
T Consensus 17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 46689999999999 69999999999999999999999875
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.21 E-value=0.0024 Score=57.26 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=60.8
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHHHHH--c--CC-----c---ccCHHHhccccCEEEEeC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADRARA--T--GV-----G---LVSFEEAISTADFISLHM 254 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~--~--g~-----~---~~~l~ell~~aD~V~l~~ 254 (595)
.+..++|+|||.|++|+.+|..+...|. ++..||.+.....+.. + .. . ...-.+-+++||+|+++.
T Consensus 17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA 96 (160)
T d1i0za1 17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA 96 (160)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence 4667899999999999999999987775 8999998753222111 1 11 0 112346789999999976
Q ss_pred CCC--h-hccccc---cH-------HHHhcCCCceEEEeccC
Q 046427 255 PLT--P-ATSKMF---ND-------EAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 255 Plt--~-~t~~li---~~-------~~l~~mk~gailiN~ar 283 (595)
-.. + +++.-+ |. ..+....+.+++++++.
T Consensus 97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN 138 (160)
T d1i0za1 97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN 138 (160)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 432 2 222211 11 12344567888888864
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.21 E-value=0.0047 Score=61.37 Aligned_cols=88 Identities=18% Similarity=0.262 Sum_probs=64.7
Q ss_pred CCEEEEEeCChHHHHHHHHHh-cCCC-EEEEECCCCcH-H----HHHHcCCcc-cCHHHhccccCEEEEeCCCChhcccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAK-GLGM-NVIAHDPYAQA-D----RARATGVGL-VSFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~-~----~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
-+++||||.|..++..++.+. .+.. +|.+|+++... + .....++.. ++.++.+.+||+|++|+| .+.-+
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~---s~~P~ 201 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTP---SRKPV 201 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCC---CSSCC
T ss_pred ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEecc---Ccccc
Confidence 358999999999999999887 3554 89999987622 1 122334432 367888999999999987 45566
Q ss_pred ccHHHHhcCCCceEEEeccCCc
Q 046427 264 FNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~ 285 (595)
+..+ .+|+|+.+..++...
T Consensus 202 ~~~~---~l~~G~hv~~iGs~~ 220 (320)
T d1omoa_ 202 VKAE---WVEEGTHINAIGADG 220 (320)
T ss_dssp BCGG---GCCTTCEEEECSCCS
T ss_pred cchh---hcCCCCeEeecCCcc
Confidence 7654 479999999987533
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.21 E-value=0.0018 Score=57.24 Aligned_cols=92 Identities=15% Similarity=0.106 Sum_probs=58.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHH--HHHc----CC-----cc-cCHHHhccccCEEEEeCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADR--ARAT----GV-----GL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~----g~-----~~-~~l~ell~~aD~V~l~~Pl 256 (595)
.+++|+|||.|.+|+.+|..+...| -++..||....... +.++ .+ .. .+-.+.+++||+|+++.-.
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~ 84 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA 84 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence 4679999999999999999988655 48999998653211 1111 11 11 1334778999999997654
Q ss_pred Ch---hcc-ccc--cH-------HHHhcCCCceEEEecc
Q 046427 257 TP---ATS-KMF--ND-------EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 257 t~---~t~-~li--~~-------~~l~~mk~gailiN~a 282 (595)
.. +++ .++ |. +.+....|.+++++++
T Consensus 85 ~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 85 NQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp CCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 32 111 111 11 1334456788888884
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.08 E-value=0.0035 Score=51.19 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=51.3
Q ss_pred cCCEEEEEeCChHH-HHHHHHHhcCCCEEEEECCCCc--HHHHHHcCCccc--CHHHhccccCEEEEeCCCChhc
Q 046427 191 VGKTLAVMGFGKVG-TEVARRAKGLGMNVIAHDPYAQ--ADRARATGVGLV--SFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 191 ~gktvGIIGlG~IG-~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~~t 260 (595)
+.|++=|||.|-+| +++|+.|+..|++|.++|...+ .+...+.|+... .-.+.+.+.|+|+..-...+++
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI~~~n 81 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDDN 81 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSCTTC
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCcCCCC
Confidence 46789999999999 6679999999999999998653 344566787532 2344568889887765443333
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.05 E-value=0.0033 Score=56.84 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=52.7
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH--HHH----cC------CcccCHHHhccccCEEEEeC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR--ARA----TG------VGLVSFEEAISTADFISLHM 254 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~----~g------~~~~~l~ell~~aD~V~l~~ 254 (595)
+.+++||++.|+|.|-.+++++..|...| +|..++|+..... +.. .. +...+++..+..+|+++.|+
T Consensus 13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~t 91 (177)
T d1nvta1 13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT 91 (177)
T ss_dssp HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCC
Confidence 44699999999999999999999998888 9999998753211 111 11 12335677788999999999
Q ss_pred CCC
Q 046427 255 PLT 257 (595)
Q Consensus 255 Plt 257 (595)
|..
T Consensus 92 p~g 94 (177)
T d1nvta1 92 PIG 94 (177)
T ss_dssp CTT
T ss_pred ccc
Confidence 964
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.01 E-value=0.0056 Score=55.66 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=42.7
Q ss_pred EEEEEeCChHHHHHHHHHhcC-CCEEEEE-CCCCcHHH--HHHcC-----------------Ccc-cCHHHhccccCEEE
Q 046427 194 TLAVMGFGKVGTEVARRAKGL-GMNVIAH-DPYAQADR--ARATG-----------------VGL-VSFEEAISTADFIS 251 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~--a~~~g-----------------~~~-~~l~ell~~aD~V~ 251 (595)
+|||.|+|+||+.++|.+... +++|++. |+.+.... ....+ +.. -++.+++.++|+|+
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi 82 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence 799999999999999999855 5788885 44332221 11111 111 15677778888888
Q ss_pred EeCCC
Q 046427 252 LHMPL 256 (595)
Q Consensus 252 l~~Pl 256 (595)
-|+|.
T Consensus 83 ecTG~ 87 (178)
T d1b7go1 83 DTTPN 87 (178)
T ss_dssp ECCST
T ss_pred ECCCC
Confidence 88885
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.0052 Score=55.56 Aligned_cols=63 Identities=22% Similarity=0.369 Sum_probs=46.0
Q ss_pred EEEEEeCChHHHH-HHHHHhcCC--CEEE-EECCCCcH--HHHHHcCCc--ccCHHHhcc--ccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTE-VARRAKGLG--MNVI-AHDPYAQA--DRARATGVG--LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~-vA~~l~~~G--~~V~-~~d~~~~~--~~a~~~g~~--~~~l~ell~--~aD~V~l~~Pl 256 (595)
++||||+|.+|+. .+..++.++ +++. ++|++... ..+...+.. +.+++++++ +.|+|++|+|.
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~ 77 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV 77 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccc
Confidence 7999999999987 477777654 5776 47887532 234455654 358999986 47999999984
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0026 Score=58.44 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=49.6
Q ss_pred cCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCcc--------cCHHHhccccCEEEEeCCC
Q 046427 191 VGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGL--------VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~--------~~l~ell~~aD~V~l~~Pl 256 (595)
..|+|.|+| .|.||+.+++.|...|++|.+++++... ......+++. .+++++++.+|+|+.++..
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 468999999 6999999999999999999999876532 1112233322 1367889999999988864
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.0027 Score=55.81 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=35.8
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
..+|.||++.|||-|.+|..-|+.+..+|++|.+++|..
T Consensus 8 ~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~ 46 (150)
T d1kyqa1 8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (150)
T ss_dssp EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 457999999999999999999999999999999997654
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=95.90 E-value=0.0049 Score=57.77 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=46.5
Q ss_pred CEEEEEeCChHHHH-HHHHHhcC-CCEEE-EECCCCc--HHHHHHcCCc------ccCHHHhcc--ccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTE-VARRAKGL-GMNVI-AHDPYAQ--ADRARATGVG------LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~--~~~a~~~g~~------~~~l~ell~--~aD~V~l~~Pl 256 (595)
-+|||||+|.+|+. ++..++.. +++|+ ++|++.. ...+++.|+. +.++++++. +.|+|++++|.
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~ 110 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN 110 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccch
Confidence 47999999999974 66666655 68877 5788752 2334555653 347899986 58899999984
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.87 E-value=0.0054 Score=55.07 Aligned_cols=87 Identities=22% Similarity=0.182 Sum_probs=55.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCC-cHHHHHHcCCccc------CHHHhcc-----ccCEEEEeCCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYA-QADRARATGVGLV------SFEEAIS-----TADFISLHMPLT 257 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~g~~~~------~l~ell~-----~aD~V~l~~Plt 257 (595)
.|.+|.|+|.|.||...++.++.+|.+ |++.|++. ..+.++++|...+ ++.+-++ ..|+|+-|+..
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~- 106 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS- 106 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC-
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCc-
Confidence 478999999999999999999999985 55667765 4466777776321 2222211 15666666652
Q ss_pred hhccccccHHHHhcCCCceEEEecc
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+++. +..++.++++..++.++
T Consensus 107 ~~~~----~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 107 PEIL----KQGVDALGILGKIAVVG 127 (174)
T ss_dssp HHHH----HHHHHTEEEEEEEEECC
T ss_pred HHHH----HHHHhcccCceEEEEEe
Confidence 2221 23345566666666654
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.57 E-value=0.0073 Score=54.01 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=46.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcCCcccCHHHhccccCEEEEeCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATGVGLVSFEEAISTADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g~~~~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|.|+|.|-.+++++..|+..|+ +|..++|+... ..+...+....+- .-..++|+|+.|+|.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~-~~~~~~DliINaTpi 83 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINS-LENQQADILVNVTSI 83 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESC-CTTCCCSEEEECSST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhc-ccccchhhheecccc
Confidence 67899999999999999999999997 79999987632 2223334433211 113578888888884
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.56 E-value=0.011 Score=51.63 Aligned_cols=90 Identities=16% Similarity=0.077 Sum_probs=57.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHHHHH---------cCC--c--ccCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADRARA---------TGV--G--LVSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~---------~g~--~--~~~l~ell~~aD~V~l~~Plt 257 (595)
.+|+|||.|.+|..+|-.+...| -++..||.+.....+.. .+. . ..+-.+.+++||+|++.....
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~ 80 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence 47999999999999999888555 48999997653322111 111 1 112247899999999987422
Q ss_pred hhcccc-----c--c-------HHHHhcCCCceEEEeccC
Q 046427 258 PATSKM-----F--N-------DEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 258 ~~t~~l-----i--~-------~~~l~~mk~gailiN~ar 283 (595)
. +.++ + | .+.+....|.+++++++-
T Consensus 81 ~-~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1ojua1 81 R-KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (142)
T ss_dssp C-CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred C-CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence 1 1111 1 1 113444577889999865
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.56 E-value=0.012 Score=51.54 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=60.6
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCC--EEEEECCCCcHHHHHHcC-C----------cccCHHHhccccCEEEEeCCC--
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGM--NVIAHDPYAQADRARATG-V----------GLVSFEEAISTADFISLHMPL-- 256 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-~----------~~~~l~ell~~aD~V~l~~Pl-- 256 (595)
.+|+||| .|.+|+.+|..+...|. ++..+|.......+.++. . ...+..+.++.||+|+++.-.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~ 80 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence 3799999 59999999999997764 799999866433333322 1 112467889999999997652
Q ss_pred Ch-hccc-cc--cH-------HHHhcCCCceEEEeccCCchhc
Q 046427 257 TP-ATSK-MF--ND-------EAFFKMKKGVRIVNVARGGVVD 288 (595)
Q Consensus 257 t~-~t~~-li--~~-------~~l~~mk~gailiN~arg~~vd 288 (595)
.+ +++. ++ |. +.+....|.++++.++. .+|
T Consensus 81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD 121 (144)
T d1mlda1 81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVN 121 (144)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chh
Confidence 22 1211 11 11 12344577888888853 345
|
| >d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phenylalanine metabolism regulatory domain domain: Prephenate dehydratase C-terminal domain species: Staphylococcus aureus [TaxId: 1280]
Probab=95.51 E-value=0.014 Score=45.76 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=46.1
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeee-ecCCCcEEEEEEcCCCCcH---HHHHHHhcC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGR-IAPQKQAVMTIGVDEEPSR---EVLKKIGET 584 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r-~~~g~~al~vi~~d~~~~~---e~l~~L~~~ 584 (595)
++++...|+||.+.++.+.++++|||+..++--. ...-++....++++....+ +++++|++.
T Consensus 4 ~~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~ 69 (80)
T d2qmwa2 4 FLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETL 69 (80)
T ss_dssp EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHHHHHh
Confidence 3455678999999999999999999999987632 2223467788999887665 455555543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.49 E-value=0.039 Score=49.39 Aligned_cols=46 Identities=35% Similarity=0.408 Sum_probs=39.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 236 (595)
.|.+|.|+|.|.||...++.++.+|. +|++.|++. ..+.++++|..
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~ 75 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 75 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC
Confidence 57899999999999999999999998 688889876 55778888863
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.46 E-value=0.0093 Score=53.80 Aligned_cols=65 Identities=25% Similarity=0.375 Sum_probs=41.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC-CEEEEEC-CCCcHH--HHHHcCCc------------------cc-CHHHhccccCE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG-MNVIAHD-PYAQAD--RARATGVG------------------LV-SFEEAISTADF 249 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d-~~~~~~--~a~~~g~~------------------~~-~l~ell~~aD~ 249 (595)
++|||-|||+||+.+.|.+...+ ++|++.+ ...... .+...++. .. +..++++++|+
T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv 81 (171)
T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (171)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence 48999999999999999887554 7877653 332221 12222221 11 35566777888
Q ss_pred EEEeCCCC
Q 046427 250 ISLHMPLT 257 (595)
Q Consensus 250 V~l~~Plt 257 (595)
|+-|+|.-
T Consensus 82 ViEcTG~f 89 (171)
T d1cf2o1 82 VIDCTPEG 89 (171)
T ss_dssp EEECCSTT
T ss_pred EEEccCCC
Confidence 88887753
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.43 E-value=0.0073 Score=53.86 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=59.3
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHHHH--Hc-------CCc---ccCHHHhccccCEEEEeC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADRAR--AT-------GVG---LVSFEEAISTADFISLHM 254 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~--~~-------g~~---~~~l~ell~~aD~V~l~~ 254 (595)
.+...+|+|||.|.+|..+|..+...|. ++..||.+.....+. ++ +.. ..+-.+.+++||+|+++.
T Consensus 16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita 95 (159)
T d2ldxa1 16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA 95 (159)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence 3555689999999999999999987664 899999875322111 11 111 112245568999999976
Q ss_pred CC--Ch-hcc-ccc--cHH-------HHhcCCCceEEEeccC
Q 046427 255 PL--TP-ATS-KMF--NDE-------AFFKMKKGVRIVNVAR 283 (595)
Q Consensus 255 Pl--t~-~t~-~li--~~~-------~l~~mk~gailiN~ar 283 (595)
-. .+ +++ .++ |.+ .+....+++++++++-
T Consensus 96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 43 22 222 112 111 1334578889998864
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.42 E-value=0.0072 Score=52.90 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=55.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHHHH----HcC-----C-c--ccCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADRAR----ATG-----V-G--LVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~----~~g-----~-~--~~~l~ell~~aD~V~l~~Plt~ 258 (595)
.+|+|||.|++|..+|..+...| -++..+|.+....... +.. . . ..+-.+.+++||+|+++.-...
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~~ 81 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPRQ 81 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEeccccc
Confidence 47999999999999998887555 4899999865322211 111 1 1 1123356889999999874321
Q ss_pred ---hcc-ccc--cH-------HHHhcCCCceEEEecc
Q 046427 259 ---ATS-KMF--ND-------EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 259 ---~t~-~li--~~-------~~l~~mk~gailiN~a 282 (595)
+++ .++ |. ..+....|++++++++
T Consensus 82 ~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 82 KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 111 111 11 2344457778888875
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.40 E-value=0.014 Score=46.74 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=49.0
Q ss_pred CEEEEEeCChHHH-HHHHHHhcCCCEEEEECCCCcH--HHHHHcCCccc--CHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGT-EVARRAKGLGMNVIAHDPYAQA--DRARATGVGLV--SFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~-~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~ 258 (595)
++|=|||.|-+|- ++|+.|+..|+.|.++|...+. +..++.|+... .-.+.+.++|+|+..--..+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI~~ 72 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRD 72 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTCCT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecCcCC
Confidence 5788999999997 6899999999999999987632 44667787542 12344678998877544333
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.26 E-value=0.0069 Score=53.61 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=30.8
Q ss_pred CEEEEE-eCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 193 KTLAVM-GFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 193 ktvGII-GlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
+||+|| |.|.||+++|++|...|++|..++|+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 479999 899999999999999999999999875
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.20 E-value=0.0057 Score=55.07 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=48.3
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH--HHHHcC----CcccCHHH-hccccCEEEEeCCCC
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD--RARATG----VGLVSFEE-AISTADFISLHMPLT 257 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g----~~~~~l~e-ll~~aD~V~l~~Plt 257 (595)
..+.||++.|+|.|-.+++++..|...+.+|..++|+.... .+...+ +...+.++ .+.++|+|+.|+|..
T Consensus 14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 46889999999999999999999988778999999876321 112211 11122222 356788888888753
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.11 E-value=0.05 Score=47.66 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=61.2
Q ss_pred ecCCEEEEEeC---ChHHHHHHHHHhcCCCEEEEECCCC----cHHHHHHcCCcc---cCHHHhccccCEEEEeCCCCh-
Q 046427 190 LVGKTLAVMGF---GKVGTEVARRAKGLGMNVIAHDPYA----QADRARATGVGL---VSFEEAISTADFISLHMPLTP- 258 (595)
Q Consensus 190 l~gktvGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~----~~~~a~~~g~~~---~~l~ell~~aD~V~l~~Plt~- 258 (595)
|.|++|+|||= |++.++++..+..||++++.+-|.. ........|... .++++.++++|+|..---...
T Consensus 1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~ 80 (153)
T d1pg5a2 1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER 80 (153)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence 57999999997 5699999999999999866543321 122233344332 379999999999875321111
Q ss_pred ----------hccccccHHHHhcCCCceEEEecc
Q 046427 259 ----------ATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 259 ----------~t~~li~~~~l~~mk~gailiN~a 282 (595)
.....++.+.++.+|++++|.-|.
T Consensus 81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L 114 (153)
T d1pg5a2 81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL 114 (153)
T ss_dssp SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence 011235666777777777777775
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.032 Score=49.54 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=37.6
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCc
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~ 236 (595)
.|.+|.|.|. |.+|....+.++.+|++|++.+... ..+.+++.|+.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~ 75 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH 75 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc
Confidence 5789999995 9999999999999999999987654 34556667753
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.06 E-value=0.014 Score=51.90 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=54.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc-----C-HHHhcc-----ccCEEEEeCCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV-----S-FEEAIS-----TADFISLHMPLT 257 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~-----~-l~ell~-----~aD~V~l~~Plt 257 (595)
.|.+|.|+|.|.+|...++.++.+|. +|++.|++. ..+.+++.|...+ + .++..+ ..|+|+-++...
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~ 111 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ 111 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence 36899999999999999999998885 778888875 3456666665321 1 222221 256666666521
Q ss_pred hhccccccHHHHhcCCCceEEEecc
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~a 282 (595)
. +. ...+..++++..++.++
T Consensus 112 ~-~~----~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 112 A-TV----DYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp H-HH----HHGGGGEEEEEEEEECC
T ss_pred h-HH----HHHHHHHhCCCEEEEEe
Confidence 1 11 22345566666666655
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.03 E-value=0.013 Score=52.34 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=56.6
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-CHH------HhccccCEEEEeCCCChhcc
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-SFE------EAISTADFISLHMPLTPATS 261 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-~l~------ell~~aD~V~l~~Plt~~t~ 261 (595)
.|++|.|.|. |.+|+...+.++.+|++|++.+... ..+.++++|+..+ +.. .....+|+|+=++. + +
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~-~- 102 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--K-E- 102 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--T-T-
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--h-h-
Confidence 4789999995 9999999999999999999988765 4566777776432 111 11234666665543 1 1
Q ss_pred ccccHHHHhcCCCceEEEecc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~a 282 (595)
+ ...++.++++..++.++
T Consensus 103 --~-~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 103 --V-EESLGLLAHGGRLVYIG 120 (171)
T ss_dssp --H-HHHHTTEEEEEEEEEC-
T ss_pred --H-HHHHHHHhcCCcEEEEe
Confidence 1 34456666666666664
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.97 E-value=0.02 Score=51.60 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=26.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEEEE-CCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVIAH-DPYA 225 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~ 225 (595)
.+|||.|+|+||+.+++.+... .++|++. |+.+
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~ 37 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKP 37 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSC
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCC
Confidence 4799999999999999998754 4787765 4433
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.97 E-value=0.048 Score=48.78 Aligned_cols=47 Identities=32% Similarity=0.423 Sum_probs=40.7
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCC-cHHHHHHcCCc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g~~ 236 (595)
-.|.+|.|+|.|-+|...++.++.+| .+|++.|++. ..+.++++|..
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence 35789999999999999999999999 5899999977 56778888864
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.96 E-value=0.0026 Score=57.13 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=56.6
Q ss_pred EEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCcHHHHHHcCCcccCHHHhcc--ccCEEEEeCCCChhccccccHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQADRARATGVGLVSFEEAIS--TADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~~~a~~~g~~~~~l~ell~--~aD~V~l~~Plt~~t~~li~~~ 267 (595)
+|||||+|.+|+..++.++... ..+...+... ......+....++++++. +.|+|++++|.. +..-+-..
T Consensus 9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~--~H~~~~~~ 84 (172)
T d1lc0a1 9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSESS--SHEDYIRQ 84 (172)
T ss_dssp EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCGG--GHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhccccc--cccccccc
Confidence 7999999999999988887543 3444433221 111122344568999986 568999999842 33222233
Q ss_pred HHhcCCCceEEEecc-CCchhcHHHHHHHH-hcCCe
Q 046427 268 AFFKMKKGVRIVNVA-RGGVVDEEALVRAL-DSGII 301 (595)
Q Consensus 268 ~l~~mk~gailiN~a-rg~~vd~~aL~~aL-~~g~i 301 (595)
.++. +. .+++.== --.+-+.++|.++. +.|..
T Consensus 85 al~~-gk-~V~~EKP~a~~~~e~~~l~~~a~~~~~~ 118 (172)
T d1lc0a1 85 FLQA-GK-HVLVEYPMTLSFAAAQELWELAAQKGRV 118 (172)
T ss_dssp HHHT-TC-EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred cccc-ch-hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence 3332 22 2444421 12334455666654 34444
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.95 E-value=0.078 Score=46.99 Aligned_cols=94 Identities=18% Similarity=0.155 Sum_probs=64.4
Q ss_pred eecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCC---cHH-------HHHHcCCc---ccCHHHhccccCEEEEeC
Q 046427 189 SLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYA---QAD-------RARATGVG---LVSFEEAISTADFISLHM 254 (595)
Q Consensus 189 ~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~---~~~-------~a~~~g~~---~~~l~ell~~aD~V~l~~ 254 (595)
.|.|++|++||=|+ +-.+++..+..||+++....|.. ..+ ...+.|.. ..++++.+..+|+|..-.
T Consensus 1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~ 80 (170)
T d1otha2 1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT 80 (170)
T ss_dssp CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence 37899999999764 55667777778999999987642 111 12233432 237999999999999876
Q ss_pred CCChh------------ccccccHHHHhcCCCceEEEecc
Q 046427 255 PLTPA------------TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 255 Plt~~------------t~~li~~~~l~~mk~gailiN~a 282 (595)
-.... ....++.+.++.++++++|.-|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl 120 (170)
T d1otha2 81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL 120 (170)
T ss_dssp SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence 53321 12335666777788888888876
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.77 E-value=0.12 Score=45.44 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=65.4
Q ss_pred eecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCC---cHH---HHHH----cCC--c-ccCHHHhccccCEEEEeC
Q 046427 189 SLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYA---QAD---RARA----TGV--G-LVSFEEAISTADFISLHM 254 (595)
Q Consensus 189 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~a~~----~g~--~-~~~l~ell~~aD~V~l~~ 254 (595)
+|.|++|++||=| ++..+++..+..||+++....|.. +.+ .+.+ .+. + ..++++.++.||+|..-.
T Consensus 1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~ 80 (163)
T d1pvva2 1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 80 (163)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence 3789999999975 577889999999999999988743 221 1111 121 2 238999999999998643
Q ss_pred CCC----hh--------ccccccHHHHhcCCCceEEEecc
Q 046427 255 PLT----PA--------TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 255 Plt----~~--------t~~li~~~~l~~mk~gailiN~a 282 (595)
=.. ++ ....++.+.++.+|++++|.-|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl 120 (163)
T d1pvva2 81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL 120 (163)
T ss_dssp CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence 111 00 12456778888888888888876
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.54 E-value=0.031 Score=46.90 Aligned_cols=98 Identities=18% Similarity=0.261 Sum_probs=69.3
Q ss_pred CEEEEEeC----ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 193 KTLAVMGF----GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 193 ktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
|+|+|||. |+.|..+.+.|+.+|++|+..+|.... -.|.. +.++.++=..-|++++++| .+.+..++.+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~~lp~~~D~vvi~vp-~~~~~~~l~~- 75 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAKE- 75 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHHH-
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc----ccCccccccchhccccceEEEEEeC-HHHHHHHHHH-
Confidence 68999995 678999999999999999999986421 13544 3479998889999999999 4556666653
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.. .+...++++.- +..++ ++.+.+++..+
T Consensus 76 ~~-~~g~k~v~~~~---g~~~~-~~~~~a~~~gi 104 (116)
T d1y81a1 76 AV-EAGFKKLWFQP---GAESE-EIRRFLEKAGV 104 (116)
T ss_dssp HH-HTTCCEEEECT---TSCCH-HHHHHHHHHTC
T ss_pred HH-hcCCceEEecc---chhhH-HHHHHHHHcCC
Confidence 33 24555677764 33344 45666665545
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=94.51 E-value=0.15 Score=44.57 Aligned_cols=93 Identities=20% Similarity=0.237 Sum_probs=61.6
Q ss_pred ecCCEEEEEeC--ChHHHHHHHHHhcCCCEEEEECCCC---cHH-------HHHHcCC--cc-cCHHHhccccCEEEEeC
Q 046427 190 LVGKTLAVMGF--GKVGTEVARRAKGLGMNVIAHDPYA---QAD-------RARATGV--GL-VSFEEAISTADFISLHM 254 (595)
Q Consensus 190 l~gktvGIIGl--G~IG~~vA~~l~~~G~~V~~~d~~~---~~~-------~a~~~g~--~~-~~l~ell~~aD~V~l~~ 254 (595)
|.|++|++||= .++-.++...+..||+++...-|.. ... .+.+.+. .. .++++.++.+|+|..-.
T Consensus 1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161)
T d1vlva2 1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161)
T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence 57999999994 5899999999999999999987742 111 1223332 22 37999999999998855
Q ss_pred CCChh------------ccc-cccHHHHhcCCCceEEEecc
Q 046427 255 PLTPA------------TSK-MFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 255 Plt~~------------t~~-li~~~~l~~mk~gailiN~a 282 (595)
-.... ... ..+......+|+++++.-|.
T Consensus 81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l 121 (161)
T d1vlva2 81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL 121 (161)
T ss_dssp CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence 32110 011 22233333467788887776
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.21 E-value=0.02 Score=48.48 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=50.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-----C---HHH-hccccCEEEEeCCCChhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-----S---FEE-AISTADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----~---l~e-ll~~aD~V~l~~Plt~~t~~ 262 (595)
|.+-|+|+|++|+.+++.|++.+ |.+.|.... .+.....|+..+ + |.+ -+.+|+.++++.+... .+
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~--~n 76 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDS--ET 76 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHH--HH
T ss_pred CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchh--hh
Confidence 46889999999999999998665 445555442 344455666432 2 222 2678999999887533 33
Q ss_pred cccHHHHhcCCCce
Q 046427 263 MFNDEAFFKMKKGV 276 (595)
Q Consensus 263 li~~~~l~~mk~ga 276 (595)
+.-....+.+.|..
T Consensus 77 ~~~~~~~r~~~~~~ 90 (129)
T d2fy8a1 77 IHCILGIRKIDESV 90 (129)
T ss_dssp HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHCCCc
Confidence 33333444455553
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.12 E-value=0.021 Score=47.25 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=46.2
Q ss_pred CCEEEEEeCC----------hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeC
Q 046427 192 GKTLAVMGFG----------KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHM 254 (595)
Q Consensus 192 gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~ 254 (595)
.|+|||+|+= .-.-.+.+.|...|.+|.+|||+..... ...+.... ++++++..||+|++..
T Consensus 15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~-~~~~~~~~~~l~~~~~~sDiII~~~ 87 (108)
T d1dlja3 15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE-SEDQSVLVNDLENFKKQANIIVTNR 87 (108)
T ss_dssp SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC-TTCCSEECCCHHHHHHHCSEEECSS
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH-hccCCEEEeCHHHHHhhCCEEEEcC
Confidence 4689999983 3567789999999999999999874321 12334333 7999999999876543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=94.07 E-value=0.032 Score=48.54 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=44.8
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-----HHHHHcCCccc-----C---HHH-hccccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-----DRARATGVGLV-----S---FEE-AISTADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~a~~~g~~~~-----~---l~e-ll~~aD~V~l~~Pl 256 (595)
.+-|+|+|++|+.+++.|...|.+|++.|..+.. +.....|+..+ + |++ -+.+||.|+++++.
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~ 81 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcccc
Confidence 4889999999999999999999999998876521 12223355322 2 222 26678999888874
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.90 E-value=0.028 Score=49.63 Aligned_cols=87 Identities=24% Similarity=0.193 Sum_probs=57.9
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCC-CEEEEECCCC-cHHHHHHcCCccc------CH-HHhc-----cccCEEEEeCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLG-MNVIAHDPYA-QADRARATGVGLV------SF-EEAI-----STADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g~~~~------~l-~ell-----~~aD~V~l~~P 255 (595)
.|.+|.|+|. |.+|...++.++..| .+|++.+++. ..+.+++.|...+ ++ +++. ...|+++-|+.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g 106 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN 106 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence 4678999995 999999999999888 5899999876 4466777775321 22 2222 23677777665
Q ss_pred CChhccccccHHHHhcCCCceEEEecc
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.+++. ...+..++++..++.++
T Consensus 107 -~~~~~----~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 107 -SEKTL----SVYPKALAKQGKYVMVG 128 (170)
T ss_dssp -CHHHH----TTGGGGEEEEEEEEECC
T ss_pred -cchHH----HhhhhhcccCCEEEEec
Confidence 22222 12345577777777764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.89 E-value=0.093 Score=46.67 Aligned_cols=47 Identities=28% Similarity=0.344 Sum_probs=39.9
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 236 (595)
-.|.+|.|+|.|.+|...++.++..|. +|++.|+.. ..+.++++|..
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~ 74 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT 74 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc
Confidence 457899999999999999999999985 899999876 45777888764
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=93.67 E-value=0.055 Score=46.53 Aligned_cols=101 Identities=19% Similarity=0.289 Sum_probs=72.0
Q ss_pred cCCEEEEEeC----ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 191 VGKTLAVMGF----GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 191 ~gktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
.-|+|+|||. ++.|..+.+.|+.+|+++..|.++.... .-.|.. +.++.++-..-|++++++| .+.+..++.
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~--~i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~ 88 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE--ELFGEEAVASLLDLKEPVDILDVFRP-PSALMDHLP 88 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS--EETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHH
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc--eeeceecccchhhccCCCceEEEecc-HHHHHHHHH
Confidence 4579999998 7899999999999999999998764211 112443 3478888888999999999 555666665
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
+. . .+...++++..+ ..+++....|.++|
T Consensus 89 ~~-~-~~g~k~i~~q~G---~~~~e~~~~a~~~G 117 (136)
T d1iuka_ 89 EV-L-ALRPGLVWLQSG---IRHPEFEKALKEAG 117 (136)
T ss_dssp HH-H-HHCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred HH-H-hhCCCeEEEecC---ccCHHHHHHHHHcC
Confidence 43 2 345667777653 44666555555555
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.63 E-value=0.1 Score=45.52 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=50.8
Q ss_pred ecCCEEEEEeC---ChHHHHHHHHHhcCCCEEEEECCCC---cH---HHHHHcCCc---ccCHHHhccccCEEEEeCC
Q 046427 190 LVGKTLAVMGF---GKVGTEVARRAKGLGMNVIAHDPYA---QA---DRARATGVG---LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 190 l~gktvGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~---~~---~~a~~~g~~---~~~l~ell~~aD~V~l~~P 255 (595)
|.|++|+|||= +++.++++..+..||+++..+.|.. .. ....+.+.. ..++++.++++|+|..-.-
T Consensus 2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~ 79 (157)
T d1ml4a2 2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI 79 (157)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence 67999999998 6899999999999999999988743 11 122333332 3489999999999887654
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=93.44 E-value=0.1 Score=46.08 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=64.2
Q ss_pred CEEEEEeCChHHHHHHHH--Hh---cC-CCEEEEECCCCcHHH-HHH-------cCCc---ccCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARR--AK---GL-GMNVIAHDPYAQADR-ARA-------TGVG---LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~--l~---~~-G~~V~~~d~~~~~~~-a~~-------~g~~---~~~l~ell~~aD~V~l~~P 255 (595)
.+|.|||.|.+|...+-. ++ .+ .-++..+|.+..... ... .... ..+.++.+++||+|++++-
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 379999999988776643 22 22 358999998753211 111 1111 1368899999999999875
Q ss_pred CCh-----------hccccccH---------------------HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 256 LTP-----------ATSKMFND---------------------EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 256 lt~-----------~t~~li~~---------------------~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
... ...+++.. .......|+++++|++----+-..++.+.....++.|
T Consensus 81 ~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~~~~~~p~a~~i~vtNPvdiit~~~~~~~p~~rviG 160 (162)
T d1up7a1 81 PGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIG 160 (162)
T ss_dssp TTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHHHTTCCSSEEE
T ss_pred cCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhhhhccCCCeEEEEeCCHHHHHHHHHHHhCCCCCEEe
Confidence 321 11122210 1122346899999998643334555555544445533
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.39 E-value=0.045 Score=46.71 Aligned_cols=106 Identities=24% Similarity=0.221 Sum_probs=69.4
Q ss_pred ecCCEEEEEeC----ChHHHHHHHHHhcCC-CEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhcccc
Q 046427 190 LVGKTLAVMGF----GKVGTEVARRAKGLG-MNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 190 l~gktvGIIGl----G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
++=|+|+|||. |..|..+.+.|+..| .+|+..+|.... -.|.. +.+++|+=..-|++++++| .+.+..+
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~----i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~ 80 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE----VQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDT 80 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE----ETTEECBSSTTSCSSCCSEEEECSC-HHHHHHH
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc----cCCeEeecchhhcCCCCceEEEecC-hHHhHHH
Confidence 45689999997 899999999999765 799999986521 23554 3489999889999999999 5566777
Q ss_pred ccHHHHhcCCCceEEEeccCC-----chhcHHHHHHHHhcCCe
Q 046427 264 FNDEAFFKMKKGVRIVNVARG-----GVVDEEALVRALDSGII 301 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg-----~~vd~~aL~~aL~~g~i 301 (595)
+.+- .+.=-++++++--+-+ +...+++|.+..++..+
T Consensus 81 ~~~~-~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi 122 (129)
T d2csua1 81 LIQC-GEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM 122 (129)
T ss_dssp HHHH-HHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHH-HHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence 6432 2222233444433222 22234556665555433
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.37 E-value=0.046 Score=47.60 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=43.0
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCC--EEEEECCCCcHHHH----HHc-------CC--cc----cCHHHhccccCEEEE
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGM--NVIAHDPYAQADRA----RAT-------GV--GL----VSFEEAISTADFISL 252 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a----~~~-------g~--~~----~~l~ell~~aD~V~l 252 (595)
.+|+||| .|.+|+.+|..+...|. ++..||.......+ .++ .. .. .+-.+.+++||+|++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 3799999 59999999999988774 89999976532211 111 11 10 123467889999999
Q ss_pred eC
Q 046427 253 HM 254 (595)
Q Consensus 253 ~~ 254 (595)
+.
T Consensus 81 tA 82 (145)
T d1hyea1 81 TS 82 (145)
T ss_dssp CC
T ss_pred ec
Confidence 84
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.35 E-value=0.47 Score=41.48 Aligned_cols=45 Identities=33% Similarity=0.482 Sum_probs=37.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|.+|.|+|.|-+|...+..++.+| .+|++.|++. ..+.+++.|.
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga 74 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA 74 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC
Confidence 5789999999999999999999998 4899999877 4456666664
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.26 E-value=0.045 Score=48.64 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=54.2
Q ss_pred cCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc------CHHHhc------cccCEEEEeCCC
Q 046427 191 VGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV------SFEEAI------STADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell------~~aD~V~l~~Pl 256 (595)
.|.+|.|.| .|.+|...++.++.+|++|++.+... ..+.+++.|+..+ ++.+-+ +..|+|+-++..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~ 104 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG 104 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc
Confidence 377999988 59999999999999999999887654 3455566665321 222211 235666665541
Q ss_pred ChhccccccHHHHhcCCCceEEEecc
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+ + -...++.|+++..+|.++
T Consensus 105 -~-~----~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 105 -E-A----IQRGVQILAPGGRFIELG 124 (183)
T ss_dssp -H-H----HHHHHHTEEEEEEEEECS
T ss_pred -h-H----HHHHHHHhcCCCEEEEEc
Confidence 1 1 123445566666666664
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.22 E-value=0.18 Score=44.72 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=64.7
Q ss_pred CEEEEEeCChHH--HHHHHHHhc---CC-CEEEEECCCCcHHHH-----------HHcCCc-----ccCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVG--TEVARRAKG---LG-MNVIAHDPYAQADRA-----------RATGVG-----LVSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG--~~vA~~l~~---~G-~~V~~~d~~~~~~~a-----------~~~g~~-----~~~l~ell~~aD~V 250 (595)
.+|.|||.|.+| ..++..++. +. -++..+|.+...... ...+.. ..+..+.++.||+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 379999999776 455555543 33 489999986532211 112221 23678899999999
Q ss_pred EEeCCCChh-----------ccccc--------------------c--HHHHhcCCCceEEEeccCCchhcHHHHHHHHh
Q 046427 251 SLHMPLTPA-----------TSKMF--------------------N--DEAFFKMKKGVRIVNVARGGVVDEEALVRALD 297 (595)
Q Consensus 251 ~l~~Plt~~-----------t~~li--------------------~--~~~l~~mk~gailiN~arg~~vd~~aL~~aL~ 297 (595)
+++...... ..++. . .+.+....|+++++|++---=+-..++.+...
T Consensus 82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~~k~~p 161 (169)
T d1s6ya1 82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTK 161 (169)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHCC
T ss_pred EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHHHHHCC
Confidence 999864321 11110 0 13455578999999986532222445555443
Q ss_pred cCCeeE
Q 046427 298 SGIISQ 303 (595)
Q Consensus 298 ~g~i~g 303 (595)
..++.|
T Consensus 162 ~~kviG 167 (169)
T d1s6ya1 162 QEKVVG 167 (169)
T ss_dssp CCCEEE
T ss_pred CCCEEe
Confidence 445533
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.15 E-value=0.062 Score=48.90 Aligned_cols=65 Identities=28% Similarity=0.334 Sum_probs=48.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCccc------CH----HHhcc--ccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVGLV------SF----EEAIS--TADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~~~------~l----~ell~--~aD~V~l~~P 255 (595)
.|.+|.|+|.|.+|...+..++.+|. +|++.|+.. ..+.+++.|...+ ++ .++.. .+|+++-++.
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG 103 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG 103 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence 47799999999999999999998887 899999876 4567788886432 22 22222 3788887765
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=92.92 E-value=0.06 Score=47.04 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=49.2
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcC----CCEEEEECCCCcHHHHHHcCC----cc-cCHHHhccccCEEEEeCCCChhccc
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGL----GMNVIAHDPYAQADRARATGV----GL-VSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~----~~-~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.+|||||. |..|+.+.++|... ..++..+............+- .. ..-.+.++++|++++|+|. ..+..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~-~~s~~ 79 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGG-SYTEK 79 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCH-HHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCc-hHHHH
Confidence 47999987 99999999987642 246655432221110001111 11 1123557899999999993 43444
Q ss_pred cccHHHHhcCCCceEEEecc
Q 046427 263 MFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~a 282 (595)
+.. . +..-...+++||.|
T Consensus 80 ~~~-~-l~~~g~~~~VIDlS 97 (147)
T d1mb4a1 80 VYP-A-LRQAGWKGYWIDAA 97 (147)
T ss_dssp HHH-H-HHHTTCCSEEEESS
T ss_pred HhH-H-HHHcCCceEEEeCC
Confidence 432 2 22233345788877
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.50 E-value=0.15 Score=43.81 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=67.7
Q ss_pred cCCEEEEEeC----ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 191 VGKTLAVMGF----GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 191 ~gktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
.-|+|+|||. |+.|..+++.|+.+|++|+..+|... .-.|.. +.++.++-..-|++++++| .+.+..++.
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~----~i~G~~~~~sl~dlp~~iD~v~i~vp-~~~~~~~~~ 92 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE----EVLGRKCYPSVLDIPDKIEVVDLFVK-PKLTMEYVE 92 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS----EETTEECBSSGGGCSSCCSEEEECSC-HHHHHHHHH
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc----ccCCCcccccccccCccceEEEEEeC-HHHHHHHHH
Confidence 4689999996 57999999999999999999998642 113443 3489999889999999999 344555554
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHh
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALD 297 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~ 297 (595)
+- . .+...++++..+ ..+++....+-+
T Consensus 93 e~-~-~~g~k~v~~~~G---~~~ee~~~~a~~ 119 (139)
T d2d59a1 93 QA-I-KKGAKVVWFQYN---TYNREASKKADE 119 (139)
T ss_dssp HH-H-HHTCSEEEECTT---CCCHHHHHHHHH
T ss_pred HH-H-HhCCCEEEEecc---ccCHHHHHHHHH
Confidence 32 2 245557777654 345554333333
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.43 E-value=0.077 Score=50.36 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=33.8
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
+|+||++.|.|- +.||+++|+.+...|++|+..+++.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~ 40 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE 40 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 589999999995 7799999999999999999999864
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.37 E-value=0.11 Score=45.19 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=55.6
Q ss_pred CEEEEEeC-ChHHHHHHHHHh---cCCCEEEEECCCCcH-HHHHHc-CC--c-------ccCHHHhccccCEEEEeCCC-
Q 046427 193 KTLAVMGF-GKVGTEVARRAK---GLGMNVIAHDPYAQA-DRARAT-GV--G-------LVSFEEAISTADFISLHMPL- 256 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~---~~G~~V~~~d~~~~~-~~a~~~-g~--~-------~~~l~ell~~aD~V~l~~Pl- 256 (595)
.+|+|||. |.+|+++|-.+. .++-++..+|..... ..+.++ .. . ..+..+.+++||+|+++.-.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~ 80 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence 47999995 999999998764 356799999975422 112121 11 0 12345678999999998742
Q ss_pred -Chh-cc-ccc--c-------HHHHhcCCCceEEEeccC
Q 046427 257 -TPA-TS-KMF--N-------DEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 257 -t~~-t~-~li--~-------~~~l~~mk~gailiN~ar 283 (595)
.+. ++ .++ | .+.+....|+++++.++.
T Consensus 81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN 119 (145)
T d2cmda1 81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (145)
T ss_dssp CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 221 11 222 1 123444567788888853
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=92.28 E-value=0.098 Score=49.44 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=32.6
Q ss_pred ecCCEEEEEeC-C--hHHHHHHHHHhcCCCEEEEECCCC
Q 046427 190 LVGKTLAVMGF-G--KVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 190 l~gktvGIIGl-G--~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
|+||++.|.|- | -||.++|+.|...|++|+..+++.
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~ 41 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE 41 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 78999999997 4 499999999999999999998764
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=92.19 E-value=0.099 Score=48.84 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=42.8
Q ss_pred CEEEEEeCChHH----HHHHHHHhcC--CCEEEE-ECCCCc--HHHHHHcCCc----ccCHHHhcc--ccCEEEEeCC
Q 046427 193 KTLAVMGFGKVG----TEVARRAKGL--GMNVIA-HDPYAQ--ADRARATGVG----LVSFEEAIS--TADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG----~~vA~~l~~~--G~~V~~-~d~~~~--~~~a~~~g~~----~~~l~ell~--~aD~V~l~~P 255 (595)
-+|||||+|.+| +.-...++.. ++++++ +|++.. ...+++.++. +.+++++++ +-|+|++|+|
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp 94 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 94 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence 479999999754 4444455543 578775 788763 2334555543 348999986 4779999998
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=92.18 E-value=0.079 Score=46.32 Aligned_cols=61 Identities=28% Similarity=0.406 Sum_probs=46.7
Q ss_pred cCCEEEEEeC---ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEe
Q 046427 191 VGKTLAVMGF---GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLH 253 (595)
Q Consensus 191 ~gktvGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~ 253 (595)
.|.+|++||= +++..+++..+..||+++....|..-.. .+..+. ..++++.++.+|+|..-
T Consensus 2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~--~~~~~~~~~~~~ea~~~aDviy~~ 66 (151)
T d2at2a2 2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD--EENTFGTYVSMDEAVESSDVVMLL 66 (151)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhc--cccceeEEEechhccccCceeeee
Confidence 5889999997 6899999999999999998887753111 112222 34799999999998764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.00 E-value=0.085 Score=49.70 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=34.0
Q ss_pred eecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|.||++.|-|.+. ||+++|+.+...|++|+..|++.
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~ 41 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK 41 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999865 99999999999999999999865
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.83 E-value=0.3 Score=43.77 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=64.6
Q ss_pred eecCCEEEEEeC--ChHHHHHHHHHhcCCCEEEEECCCC---cHHH-------HHHcCCc--c-cCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGF--GKVGTEVARRAKGLGMNVIAHDPYA---QADR-------ARATGVG--L-VSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGl--G~IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~g~~--~-~~l~ell~~aD~V~l~ 253 (595)
.|.|.+|++||= -++..+++..+..||+++....|.. ..+. +...|.. . .++++.++.+|+|..-
T Consensus 2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~ 81 (185)
T d1dxha2 2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD 81 (185)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence 378999999994 4899999999999999999998842 2211 1223432 2 3799999999999875
Q ss_pred CCCCh--hc------------cccccHHHHhcCCCceEEEecc
Q 046427 254 MPLTP--AT------------SKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 254 ~Plt~--~t------------~~li~~~~l~~mk~gailiN~a 282 (595)
.=... .. ..+.+......+|+++++.-|.
T Consensus 82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L 124 (185)
T d1dxha2 82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL 124 (185)
T ss_dssp CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence 43111 00 1122333445678999999887
|
| >d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phenylalanine metabolism regulatory domain domain: Phenylalanine hydroxylase N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.80 E-value=0.14 Score=41.33 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=46.1
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeee-cCCCcEEEEEEcCCCCcH---HHHHHHhc
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRI-APQKQAVMTIGVDEEPSR---EVLKKIGE 583 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~-~~g~~al~vi~~d~~~~~---e~l~~L~~ 583 (595)
-..|++.-.|+||.+..+.+.+++++||+..++--.. ....+....|+++....+ .+++.|++
T Consensus 16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L~~ 82 (97)
T d1phza1 16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRN 82 (97)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChHHHHHHHHHHHH
Confidence 3567777889999999999999999999999986322 233456777888776444 44555543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.79 E-value=0.26 Score=43.01 Aligned_cols=46 Identities=33% Similarity=0.414 Sum_probs=37.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 236 (595)
.|.+|.|+|.|-+|...++.++.+|. +|++.|++. ..+.++++|..
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~ 75 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT 75 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc
Confidence 47899999999999999999999995 678888766 45667777753
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=91.52 E-value=0.11 Score=44.90 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=53.2
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCC--EEEEECCCCcHHH----HHHc----CC----cc-cCHHHhccccCEEEEeCC-
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGM--NVIAHDPYAQADR----ARAT----GV----GL-VSFEEAISTADFISLHMP- 255 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~----a~~~----g~----~~-~~l~ell~~aD~V~l~~P- 255 (595)
.+|+||| .|.+|+.+|..+...+. ++..||.....+. +.++ .+ .. ..-.+.+++||+|+++.-
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~ 80 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence 3799999 59999999999986654 8999996432211 1111 11 11 112345689999998754
Q ss_pred -CChh-ccc-cc--cH-------HHHhcCCCceEEEecc
Q 046427 256 -LTPA-TSK-MF--ND-------EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 256 -lt~~-t~~-li--~~-------~~l~~mk~gailiN~a 282 (595)
..+. ++. ++ |. ..+....|.++++.++
T Consensus 81 ~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred ccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 2221 111 11 11 2344566778888774
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.41 E-value=0.096 Score=48.20 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=31.8
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
||+|.|||-|.-|...|..|+..|++|++++...
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 6999999999999999999999999999998653
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=0.16 Score=44.14 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=57.2
Q ss_pred CEEEEEeC-ChHHHHHHHHHhc---CC-CEEEEECCCCcH--HHH-HHcCCcc--cCHHHhccccCEEEEeCCCChhccc
Q 046427 193 KTLAVMGF-GKVGTEVARRAKG---LG-MNVIAHDPYAQA--DRA-RATGVGL--VSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~---~G-~~V~~~d~~~~~--~~a-~~~g~~~--~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
|+|||||. |.+|+.+.++|.. |- .++..+...... ... ....... ..-.+.++++|++++|+|. +....
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~-~~s~~ 80 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGG-DYTNE 80 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCH-HHHHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCc-hHHHH
Confidence 58999998 9999999986643 22 466655433211 100 1111111 1122457899999999994 33333
Q ss_pred cccHHHHhcCCCceEEEeccC---Cc--------hhcHHHHHHHHhcC
Q 046427 263 MFNDEAFFKMKKGVRIVNVAR---GG--------VVDEEALVRALDSG 299 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~ar---g~--------~vd~~aL~~aL~~g 299 (595)
+.. .+..-+.+.++||.+. -. =|+.+.|..++++|
T Consensus 81 ~~~--~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g 126 (146)
T d1t4ba1 81 IYP--KLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG 126 (146)
T ss_dssp HHH--HHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred hhH--HHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence 321 2222333457777773 21 12555666777765
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.16 Score=47.20 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=33.5
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+||++.|-|- +.||+++|++|...|++|+..|++.
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~ 39 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN 39 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 589999999988 5599999999999999999998765
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=91.24 E-value=0.32 Score=42.37 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=60.9
Q ss_pred ecCCEEEEEeC---ChHHHHHHHHHhcCC-CEEEEECCCC---cH---HHHHHcCCc---ccCHHHhccccCEEEEeCCC
Q 046427 190 LVGKTLAVMGF---GKVGTEVARRAKGLG-MNVIAHDPYA---QA---DRARATGVG---LVSFEEAISTADFISLHMPL 256 (595)
Q Consensus 190 l~gktvGIIGl---G~IG~~vA~~l~~~G-~~V~~~d~~~---~~---~~a~~~g~~---~~~l~ell~~aD~V~l~~Pl 256 (595)
+.|.+|++||= |++..++...+..|| +.+....|.. +. ..++..|.. ..+++++++++|+|..-.-.
T Consensus 2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~ 81 (160)
T d1ekxa2 2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ 81 (160)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence 67999999996 679999999999997 5566665532 11 223444543 23789999999999864322
Q ss_pred Chh----------ccccccHHHHhcCCCceEEEecc
Q 046427 257 TPA----------TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 257 t~~----------t~~li~~~~l~~mk~gailiN~a 282 (595)
... ....++.+.++.+++++++.-|.
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL 117 (160)
T d1ekxa2 82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 117 (160)
T ss_dssp GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence 110 11223455666677777777664
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=90.88 E-value=0.14 Score=42.42 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=31.1
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
-|++.|||-|.+|-++|..++.+|.+|..+++..
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 4789999999999999999999999999998643
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.81 E-value=0.13 Score=42.89 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=30.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
|++.|||-|.||-++|..+..+|++|..+++..
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence 689999999999999999999999999987543
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.80 E-value=0.17 Score=47.54 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=33.9
Q ss_pred eeeecCCEEEEEeCC---hHHHHHHHHHhcCCCEEEEECCCC
Q 046427 187 GVSLVGKTLAVMGFG---KVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 187 g~~l~gktvGIIGlG---~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
..+|+||++.|-|.+ -||+++|++|...|++|+..++..
T Consensus 3 ~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~ 44 (256)
T d1ulua_ 3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (256)
T ss_dssp EECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence 357999999999974 499999999999999998887654
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=90.62 E-value=0.34 Score=43.24 Aligned_cols=94 Identities=18% Similarity=0.278 Sum_probs=59.5
Q ss_pred EEEEEeC-ChHHHHHHHHHhcCC-CEEEEEC-C-CCc--HHHHH-H-cC---CcccCHHHhccccCEEEEeCCCChhccc
Q 046427 194 TLAVMGF-GKVGTEVARRAKGLG-MNVIAHD-P-YAQ--ADRAR-A-TG---VGLVSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~~G-~~V~~~d-~-~~~--~~~a~-~-~g---~~~~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
+|||+|. |..|+.+.+.|..+- +++...- . +.. ..... . .+ +...+.+++..++|++++|+|... ...
T Consensus 3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~-s~~ 81 (176)
T d1vkna1 3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA-SYD 81 (176)
T ss_dssp EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH-HHH
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHH-HHH
Confidence 7999997 999999999998754 5666542 2 221 11110 0 11 223467888889999999999543 333
Q ss_pred cccHHHHhcCCCceEEEeccCCchhcHHHHHH
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd~~aL~~ 294 (595)
++ ... .++.+||.|..=-.+....++
T Consensus 82 ~~-----~~~-~~~~VIDlSadfRl~~~~~y~ 107 (176)
T d1vkna1 82 LV-----REL-KGVKIIDLGADFRFDDPGVYR 107 (176)
T ss_dssp HH-----TTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred HH-----Hhh-ccceEEecCccccccchhhHH
Confidence 33 223 578999999554454444444
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=90.54 E-value=0.14 Score=48.36 Aligned_cols=37 Identities=35% Similarity=0.494 Sum_probs=33.6
Q ss_pred eecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
+|+||++.|-|-+ -||+++|+++...|++|+..|++.
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD 39 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899999999885 699999999999999999999764
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=90.37 E-value=0.66 Score=42.82 Aligned_cols=112 Identities=22% Similarity=0.186 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC--c--
Q 046427 152 AAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA--Q-- 226 (595)
Q Consensus 152 ~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~--~-- 226 (595)
.+|--+++-+|+.+|- .|..|...++.|.|.|.-|-.+|+.+...+. +++.+|+.- .
T Consensus 4 GTaaV~LAgll~a~~~------------------~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~ 65 (222)
T d1vl6a1 4 GTAVVVSAAFLNALKL------------------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNEN 65 (222)
T ss_dssp HHHHHHHHHHHHHHHH------------------HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTT
T ss_pred hHHHHHHHHHHHHHHH------------------hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcC
Confidence 3555677777777772 3457899999999999999999999987775 688888651 0
Q ss_pred -------H---HHHHHcCC--cccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCch
Q 046427 227 -------A---DRARATGV--GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 227 -------~---~~a~~~g~--~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~ 286 (595)
. ..+..... ...++.+++..+|++...- +.+++.++.+..|.+..+|.=.|.-.-
T Consensus 66 r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~ 132 (222)
T d1vl6a1 66 DPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVP 132 (222)
T ss_dssp SGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred cccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCcc
Confidence 0 01111111 1237889999999876643 578888889999999999998886443
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=90.33 E-value=0.15 Score=42.03 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=30.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
|++.|||-|.+|-++|..++.+|.+|..+++..
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 689999999999999999999999999998653
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.27 E-value=0.14 Score=42.14 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=30.2
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY 224 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 224 (595)
-|++.|||-|.||-++|..+..+|.+|..+.+.
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~ 54 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGA 54 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEec
Confidence 379999999999999999999999999998654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.21 E-value=0.081 Score=46.84 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=31.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~ 225 (595)
.+|+|.|||-|..|-..|..|+..|++ |..+++..
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~ 38 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE 38 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence 579999999999999999999999995 98998654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.99 E-value=0.74 Score=39.98 Aligned_cols=46 Identities=30% Similarity=0.444 Sum_probs=38.0
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 235 (595)
-.|.+|.|+|.|.+|...+..++.+|. +|++.|+.. ..+.++++|.
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA 74 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA 74 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC
Confidence 357899999999999999999987765 799999877 4566777775
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.18 Score=47.78 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=35.2
Q ss_pred cceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCC
Q 046427 185 YVGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 185 ~~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
|....|+||++.|.|-+ -||+++|+.+...|++|+..+++.
T Consensus 7 f~~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~ 48 (269)
T d1xu9a_ 7 FRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK 48 (269)
T ss_dssp CCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 33334999999999985 499999999999999999999865
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.89 E-value=0.18 Score=47.45 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=34.9
Q ss_pred eeeecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 187 GVSLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 187 g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
|..|.||++.|-|- +-||+++|+++...|++|+..|++.
T Consensus 1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (250)
T d1ydea1 1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE 40 (250)
T ss_dssp CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45689999999987 7899999999999999999999764
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=89.68 E-value=0.19 Score=41.34 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=31.9
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY 224 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 224 (595)
..+|++.|||-|.||-.+|..++.+|.+|..+.+.
T Consensus 20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~ 54 (121)
T d1mo9a2 20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT 54 (121)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcchhheEeecc
Confidence 35799999999999999999999999999998764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=89.47 E-value=0.16 Score=43.75 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=30.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~ 225 (595)
.||+|.|||-|.+|-++|..|+.++ .+|+.+++..
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 4899999999999999999999766 6899988764
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.39 E-value=0.19 Score=44.99 Aligned_cols=63 Identities=19% Similarity=0.126 Sum_probs=41.5
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCC--EEEEECCCCcHHHHHHcCCcc--------cCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGM--NVIAHDPYAQADRARATGVGL--------VSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g~~~--------~~l~ell~~aD~V~l~~P 255 (595)
+||.|.| .|.||+.+++.|...|. .|+...+..........+++. .++.++++.+|.|+.+..
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~ 77 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS 77 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence 5899999 69999999999998885 455555544222112223321 135667888898876654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.36 E-value=0.2 Score=41.77 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=30.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY 224 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 224 (595)
|++.|||-|.||-.+|..++.+|.+|..+.+.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~ 54 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRH 54 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeec
Confidence 78999999999999999999999999999765
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=89.26 E-value=0.18 Score=47.12 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=32.8
Q ss_pred ecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCC
Q 046427 190 LVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 190 l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
|.||++.|.|-+. ||+++|+.+...|++|+..+++.
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE 39 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 7899999998865 99999999999999999998764
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.24 E-value=0.18 Score=44.32 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=34.4
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA-QADRARATG 234 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g 234 (595)
.|++|.|.|. |.+|....+.++.+|++|++.+.+. ..+.++++|
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lG 73 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG 73 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcC
Confidence 4789999955 5699999999999999999998765 334444444
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.12 E-value=0.44 Score=44.41 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=32.8
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
+|+||++.|-|- +-||+++|+++...|++|+..|++.
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~ 38 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE 38 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999886 5699999999999999999999864
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.96 E-value=0.089 Score=45.99 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=53.8
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhcCCC---EEEEECCCCcHHHHHHcCC----cccCHHHhccccCEEEEeCCCChhcccc
Q 046427 192 GKTLAVMGF-GKVGTEVARRAKGLGM---NVIAHDPYAQADRARATGV----GLVSFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 192 gktvGIIGl-G~IG~~vA~~l~~~G~---~V~~~d~~~~~~~a~~~g~----~~~~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
|-+|||||. |-+|+++.+.|....+ ++..+....+......... .....++.+.++|++++++|. ..+..+
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~-~~s~~~ 79 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGS-STSAKY 79 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCH-HHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCc-cchhhH
Confidence 558999998 9999999999986643 4444432211110000000 112356677899999999984 323322
Q ss_pred ccHHHHhcCCCceEEEeccC
Q 046427 264 FNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~ar 283 (595)
. ....++|+.+||.|.
T Consensus 80 ~----~~~~~~~~~VIDlSs 95 (154)
T d2gz1a1 80 A----PYAVKAGVVVVDNTS 95 (154)
T ss_dssp H----HHHHHTTCEEEECSS
T ss_pred H----hhhccccceehhcCh
Confidence 2 233568999999883
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=88.91 E-value=0.52 Score=42.69 Aligned_cols=98 Identities=23% Similarity=0.373 Sum_probs=71.6
Q ss_pred HHHHHHhcCCCEEEEECC-----CCcHHHHHHcCCccc-CHHHhccccCEEE-EeCCCChhccccccHHHHhcCCCceEE
Q 046427 206 EVARRAKGLGMNVIAHDP-----YAQADRARATGVGLV-SFEEAISTADFIS-LHMPLTPATSKMFNDEAFFKMKKGVRI 278 (595)
Q Consensus 206 ~vA~~l~~~G~~V~~~d~-----~~~~~~a~~~g~~~~-~l~ell~~aD~V~-l~~Plt~~t~~li~~~~l~~mk~gail 278 (595)
..++.+...|++|++=.- ..+.+...+.|+..+ +-++++.++|+|+ +..|...+ .+.+.+..||+|.++
T Consensus 21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l 96 (194)
T d1l7da2 21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL 96 (194)
T ss_dssp HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence 467888899999998532 224555677888766 5789999999887 45564432 233467789999999
Q ss_pred EeccCCchhcHHHHHHHHhcCCeeEEEEecC
Q 046427 279 VNVARGGVVDEEALVRALDSGIISQAALDVF 309 (595)
Q Consensus 279 iN~arg~~vd~~aL~~aL~~g~i~ga~lDv~ 309 (595)
|..-- .....++.++|.+.++...++|..
T Consensus 97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~i 125 (194)
T d1l7da2 97 MCHLG--ALTNRPVVEALTKRKITAYAMELM 125 (194)
T ss_dssp EEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred EEecc--cccchhHHHHHHhcCceEEeeecc
Confidence 98753 345677899999999977777654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.89 E-value=0.41 Score=44.58 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=33.6
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|.||++.|.|- +-||+++|+++...|++|+..|++.
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~ 41 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ 41 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 589999999987 5699999999999999999999864
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=88.85 E-value=0.06 Score=47.77 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=40.2
Q ss_pred EEEEEeC-ChHHHHHHHHHhc-CCCEEEE-ECCCCcHHH---------HHHcCCcc-cCHHHhccccCEEEEeC
Q 046427 194 TLAVMGF-GKVGTEVARRAKG-LGMNVIA-HDPYAQADR---------ARATGVGL-VSFEEAISTADFISLHM 254 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~---------a~~~g~~~-~~l~ell~~aD~V~l~~ 254 (595)
+|+|+|+ |+||+.+++.+.. -++++.+ +|+...... ....++.. .+++++++.+|+|+=-.
T Consensus 6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs 79 (162)
T d1diha1 6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT 79 (162)
T ss_dssp EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec
Confidence 7999995 9999999998875 5788664 565322110 01122222 26778888899887655
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=88.74 E-value=0.24 Score=46.75 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=33.3
Q ss_pred eecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|.||++.|-|-+ -||+++|+.+...|++|+..|++.
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 42 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ 42 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899999999885 599999999999999999999854
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=88.68 E-value=0.3 Score=47.83 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=28.1
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
|.+.|.| .|-||+.+++.|...|++|++.|+..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 5666887 79999999999999999999999853
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.66 E-value=0.22 Score=41.44 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=31.6
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY 224 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 224 (595)
-.+|++.|||-|.+|-.+|..+...|.+|..+++.
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~ 62 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCCCEEEEECChHHHHHHHHHhhccceEEEEEEec
Confidence 34789999999999999999999999999998664
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=88.51 E-value=0.23 Score=41.32 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=31.3
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
+|++.|||-|.+|-++|..++..|.+|..+++..
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 63 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence 5899999999999999999999999999997654
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=88.51 E-value=0.23 Score=46.20 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=32.3
Q ss_pred ecCCEEEEEeCCh---HHHHHHHHHhcCCCEEEEECCCC
Q 046427 190 LVGKTLAVMGFGK---VGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 190 l~gktvGIIGlG~---IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
|+||++.|-|-+. ||+++|+.+...|++|+..+++.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~ 41 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 41 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence 7899999999764 99999999999999999888764
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=88.26 E-value=0.35 Score=42.69 Aligned_cols=88 Identities=22% Similarity=0.170 Sum_probs=61.6
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc------C-HHHhc-----cccCEEEEeCCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV------S-FEEAI-----STADFISLHMPL 256 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~------~-l~ell-----~~aD~V~l~~Pl 256 (595)
.|.+|.|.|. |.+|...++.++..|++|++.++.. ..+..++.|...+ + .+.++ ...|+|+-|+.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG- 107 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG- 107 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence 4789999888 7799999999999999999988655 3456677775321 1 22222 34788887774
Q ss_pred ChhccccccHHHHhcCCCceEEEeccCC
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
.++ -.+.++.|+++..++.++..
T Consensus 108 -~~~----~~~~~~~l~~~G~~v~~G~~ 130 (182)
T d1v3va2 108 -GEF----LNTVLSQMKDFGKIAICGAI 130 (182)
T ss_dssp -HHH----HHHHGGGEEEEEEEEECCCG
T ss_pred -chh----hhhhhhhccCCCeEEeecce
Confidence 222 14557778888888888643
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=88.19 E-value=0.46 Score=44.65 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=32.6
Q ss_pred ecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCC
Q 046427 190 LVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 190 l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
|.||++.|-|-+ -||+++|+.+...|++|+..|++.
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 38 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS 38 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 789999999875 699999999999999999999864
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=88.18 E-value=0.25 Score=44.27 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=34.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
....|+|.|||-|..|-+.|..|...|++|..|+...
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence 4678999999999999999999999999999998754
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=88.13 E-value=0.11 Score=43.81 Aligned_cols=62 Identities=16% Similarity=0.309 Sum_probs=38.6
Q ss_pred EEEEEeCChHHHHHHHHHh-cCCCEEEEE-CCCCcHHHHHHcCCccc---CHHHhcc-ccCEEEEeCC
Q 046427 194 TLAVMGFGKVGTEVARRAK-GLGMNVIAH-DPYAQADRARATGVGLV---SFEEAIS-TADFISLHMP 255 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~-~~G~~V~~~-d~~~~~~~a~~~g~~~~---~l~ell~-~aD~V~l~~P 255 (595)
++.|+|.|.+|+.+++.+. .-|++++++ |.++...-..-.|+... .++++.+ ..++.++++|
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~ 72 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP 72 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence 7999999999999998765 457898886 54442211111233322 3444443 4566677776
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=87.82 E-value=0.3 Score=45.82 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=45.7
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcH---HH------HHHcCCccc--------CHHHhccccCEEEEeC
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQA---DR------ARATGVGLV--------SFEEAISTADFISLHM 254 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~------a~~~g~~~~--------~l~ell~~aD~V~l~~ 254 (595)
++|.|.| .|.||+.+++.|...|++|++.++.... .. ....+++.+ ++.+.++.+|.++.+.
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~ 83 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL 83 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence 4689999 5999999999999999999999875421 11 122344321 2556778888888877
Q ss_pred CCC
Q 046427 255 PLT 257 (595)
Q Consensus 255 Plt 257 (595)
+..
T Consensus 84 ~~~ 86 (312)
T d1qyda_ 84 AGG 86 (312)
T ss_dssp CCS
T ss_pred hhc
Confidence 643
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.78 E-value=0.33 Score=45.39 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=33.3
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+||++.|-|- +-||+++|+.+...|++|+..|++.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~ 40 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD 40 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 488999999988 5699999999999999999999864
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=87.71 E-value=0.17 Score=42.16 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=30.8
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.+++.|||-|.||-++|..++.+|++|....+..
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~ 58 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS 58 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence 4789999999999999999999999999987543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=87.71 E-value=0.28 Score=46.18 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=34.1
Q ss_pred eeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCC
Q 046427 188 VSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 188 ~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.+|+||++.|-|-+ -||+++|+++...|++|+..|++.
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 43 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA 43 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46899999999885 499999999999999999998865
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.69 E-value=0.17 Score=42.18 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=29.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY 224 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 224 (595)
+++.|||-|.||-++|..++.+|.+|..+.+.
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 57999999999999999999999999888653
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=87.55 E-value=0.28 Score=40.52 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=29.3
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDP 223 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~ 223 (595)
.+++.|||-|.||-.+|..++.+|.+|..+.+
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~ 53 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEA 53 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEe
Confidence 47899999999999999999999999998754
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.50 E-value=0.52 Score=44.20 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=33.5
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+||++.|-|. +.||+++|+.|...|++|++.+++.
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~ 44 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV 44 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 389999999987 6799999999999999999999764
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=87.34 E-value=0.23 Score=44.09 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=42.1
Q ss_pred CCEEEEEeCChHHHHHHH---HHh--cC-CCEEEEECCCCcHHHH---------HHcCC--c---ccCHHHhccccCEEE
Q 046427 192 GKTLAVMGFGKVGTEVAR---RAK--GL-GMNVIAHDPYAQADRA---------RATGV--G---LVSFEEAISTADFIS 251 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~---~l~--~~-G~~V~~~d~~~~~~~a---------~~~g~--~---~~~l~ell~~aD~V~ 251 (595)
+.+|+|||.|.+|...+- .++ .+ +-++..+|.+...... ...+. + ..+.++.++.||+|+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 358999999999976433 333 33 3599999987532111 11222 1 137899999999999
Q ss_pred EeCC
Q 046427 252 LHMP 255 (595)
Q Consensus 252 l~~P 255 (595)
++.-
T Consensus 82 ~~~~ 85 (171)
T d1obba1 82 NTAM 85 (171)
T ss_dssp ECCC
T ss_pred eecc
Confidence 8753
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=87.27 E-value=0.15 Score=47.61 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=33.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
.|++++|.|||+|-+|..+|..|...|. ++..+|...
T Consensus 27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 4999999999999999999999999997 788888653
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.26 E-value=0.22 Score=47.03 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=33.4
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+||++.|-|- +-||+++|+++...|++|+..|++.
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~ 42 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE 42 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 589999999988 4599999999999999999999864
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=87.24 E-value=0.24 Score=48.14 Aligned_cols=67 Identities=24% Similarity=0.284 Sum_probs=47.9
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcHHHH----HHcCCccc-----C----HHHhccccCEEEEeCCCC
Q 046427 192 GKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQADRA----RATGVGLV-----S----FEEAISTADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a----~~~g~~~~-----~----l~ell~~aD~V~l~~Plt 257 (595)
-|||.|+|- |.||+.+++.|.+.|++|.+..|+.+.... ...|++.+ + ++.++..+|.+++..+..
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~~ 82 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ 82 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCST
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecccc
Confidence 479999995 999999999999999999998665432211 12244321 1 556788899988877644
Q ss_pred h
Q 046427 258 P 258 (595)
Q Consensus 258 ~ 258 (595)
.
T Consensus 83 ~ 83 (350)
T d1xgka_ 83 A 83 (350)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=87.23 E-value=0.26 Score=46.44 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=33.2
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+||++.|-|- +-||+++|+.|...|++|+..|++.
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR 39 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 488999999988 5599999999999999999999764
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.21 E-value=0.52 Score=44.08 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=33.5
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
+|+||++.|-|- +-||+++|+++...|++|+..|++.
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL 39 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 589999999988 4599999999999999999999764
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.19 E-value=0.12 Score=44.80 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=50.7
Q ss_pred CEEEEEeC-ChHHHHHHHHHhc--C-CCEEEEECCCCcHHHHHHcCC---cccC-HHHhccccCEEEEeCCCChhccccc
Q 046427 193 KTLAVMGF-GKVGTEVARRAKG--L-GMNVIAHDPYAQADRARATGV---GLVS-FEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~--~-G~~V~~~d~~~~~~~a~~~g~---~~~~-l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+|||||. |.+|+.+.+.|.. + ..++................. ...+ -.+.+.++|++++++|. .....+.
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~-~~s~~~~ 81 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAA-EVSRAHA 81 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCH-HHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCc-chhhhhc
Confidence 47999988 9999999999963 3 245554422211100000111 1111 23557899999999983 3333333
Q ss_pred cHHHHhcCCCceEEEeccC
Q 046427 265 NDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~ar 283 (595)
.. ..+.|+++||.+.
T Consensus 82 ~~----~~~~g~~VID~Ss 96 (144)
T d2hjsa1 82 ER----ARAAGCSVIDLSG 96 (144)
T ss_dssp HH----HHHTTCEEEETTC
T ss_pred cc----cccCCceEEeech
Confidence 22 2467899999874
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=87.14 E-value=0.35 Score=40.04 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=31.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
++++.|||-|.+|-++|..++.+|.+|..+++..
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence 4689999999999999999999999999998654
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=87.12 E-value=0.69 Score=40.71 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=41.0
Q ss_pred CCEEEEEeCChHHHHH--HHHHh---cC-CCEEEEECCCCcHHH---------HHHcCCc-----ccCHHHhccccCEEE
Q 046427 192 GKTLAVMGFGKVGTEV--ARRAK---GL-GMNVIAHDPYAQADR---------ARATGVG-----LVSFEEAISTADFIS 251 (595)
Q Consensus 192 gktvGIIGlG~IG~~v--A~~l~---~~-G~~V~~~d~~~~~~~---------a~~~g~~-----~~~l~ell~~aD~V~ 251 (595)
..+|.|||.|.+|... ...++ .+ +-++..+|.+..... ....+.. ..+..|.++.||+|+
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 3479999999887542 23333 22 248999998753211 1112221 237889999999999
Q ss_pred EeCC
Q 046427 252 LHMP 255 (595)
Q Consensus 252 l~~P 255 (595)
++.-
T Consensus 83 itag 86 (167)
T d1u8xx1 83 AHIR 86 (167)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9874
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.93 E-value=0.62 Score=43.27 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=33.2
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
+|.||++.|-|- +-||+++|+.+...|++|+..|++.
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN 39 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 489999999987 5699999999999999999998764
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=86.78 E-value=0.27 Score=44.65 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=31.2
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
-|+|.|||-|..|.+.|..|+..|.+|.++|+..
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999999999999999999753
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.73 E-value=0.61 Score=39.64 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=24.8
Q ss_pred EEEEEe-CChHHHHHHHHHh-cCCCEEEE-ECCC
Q 046427 194 TLAVMG-FGKVGTEVARRAK-GLGMNVIA-HDPY 224 (595)
Q Consensus 194 tvGIIG-lG~IG~~vA~~l~-~~G~~V~~-~d~~ 224 (595)
+|+|+| .|+||+.+++.+. .-++++.+ +|+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~ 34 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG 34 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 689999 6999999999876 56788664 6654
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.71 E-value=0.29 Score=42.43 Aligned_cols=62 Identities=13% Similarity=0.027 Sum_probs=43.1
Q ss_pred EEEEEe-CChHHHHHHHHHhcCC-------CEEEEECCCCcHHHHHH-------cCCc-------ccCHHHhccccCEEE
Q 046427 194 TLAVMG-FGKVGTEVARRAKGLG-------MNVIAHDPYAQADRARA-------TGVG-------LVSFEEAISTADFIS 251 (595)
Q Consensus 194 tvGIIG-lG~IG~~vA~~l~~~G-------~~V~~~d~~~~~~~a~~-------~g~~-------~~~l~ell~~aD~V~ 251 (595)
+|.||| .|.+|+.+|-.+...+ ..+..||.......+.. ..+. ..+..+.+++||+|+
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvVV 84 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAI 84 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEEE
Confidence 799999 5999999999886432 25777887654332211 1111 125789999999999
Q ss_pred EeCC
Q 046427 252 LHMP 255 (595)
Q Consensus 252 l~~P 255 (595)
++.-
T Consensus 85 itag 88 (154)
T d5mdha1 85 LVGS 88 (154)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9874
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=86.70 E-value=0.27 Score=41.56 Aligned_cols=31 Identities=19% Similarity=0.495 Sum_probs=26.1
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcCCCEEEE-ECC
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGLGMNVIA-HDP 223 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~-~d~ 223 (595)
.+|||+|+ |+||+.+++.+...|+++.+ +|+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~ 33 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV 33 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECC
Confidence 37999996 99999999999999988765 443
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=86.58 E-value=0.37 Score=44.92 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=33.1
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+||++.|-|- +-||+++|+.+...|++|+..|++.
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE 39 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 378999999987 5699999999999999999999864
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=86.34 E-value=0.3 Score=40.89 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=30.9
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.+++.|||-|.||-++|..++.+|.+|..+.+..
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 4789999999999999999999999999987643
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=86.20 E-value=0.81 Score=42.72 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=52.5
Q ss_pred eecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCC-h--hcccc
Q 046427 189 SLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLT-P--ATSKM 263 (595)
Q Consensus 189 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt-~--~t~~l 263 (595)
+|+||++.|-|-+ -||+++|+.+...|++|+..++.. ..+... .+........+.+.++=++ + +.+.+
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 74 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA-------ELKAINPKVNITFHTYDVTVPVAESKKL 74 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH-------HHHHHCTTSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH-------HHHhhCCCCCEEEEEeecCCCHHHHHHH
Confidence 5899999999886 599999999999999877765443 222111 2334445556666665554 2 34444
Q ss_pred ccHHHHhcCCCceEEEecc
Q 046427 264 FNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~a 282 (595)
+++- .+...+==+|||.+
T Consensus 75 ~~~~-~~~~g~iDilvnnA 92 (254)
T d1sbya1 75 LKKI-FDQLKTVDILINGA 92 (254)
T ss_dssp HHHH-HHHHSCCCEEEECC
T ss_pred HHHH-HHHcCCCCEEEeCC
Confidence 5432 22222222666765
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=85.81 E-value=0.36 Score=39.47 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=30.5
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY 224 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 224 (595)
.+++.|||-|.+|-++|..++.+|.+|..+++.
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~ 53 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR 53 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeee
Confidence 478999999999999999999999999998764
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=85.80 E-value=0.45 Score=40.05 Aligned_cols=35 Identities=37% Similarity=0.404 Sum_probs=31.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.+|++.|||-|.+|-++|..++..|.+|..+++..
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 68 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence 36899999999999999999999999999998653
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=85.52 E-value=1.1 Score=39.85 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=50.5
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcC-CCEEEEE-CCCC-cHHHHH--H-c-CCc----ccCHHHhccccCEEEEeCCCChhc
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGL-GMNVIAH-DPYA-QADRAR--A-T-GVG----LVSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~-d~~~-~~~~a~--~-~-g~~----~~~l~ell~~aD~V~l~~Plt~~t 260 (595)
-+|||+|. |-.|+++.+.|... .+++... .+.. ...... . . +.. ....++.+.++|++++|+|... .
T Consensus 6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~-s 84 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGT-T 84 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSH-H
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccch-H
Confidence 36999997 99999999999976 3565554 2222 111111 0 1 111 1124566789999999999543 3
Q ss_pred cccccHHHHhcCCCceEEEeccCCch
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~~ 286 (595)
..+ ...+.+...+|+.+.+--
T Consensus 85 ~~~-----~~~l~~~~~~v~~~~~~~ 105 (183)
T d2cvoa1 85 QEI-----IKGLPQELKIVDLSADFR 105 (183)
T ss_dssp HHH-----HHTSCSSCEEEECSSTTT
T ss_pred HHH-----HHHHHhcCcccccchhhh
Confidence 322 233444445555544333
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=85.51 E-value=0.67 Score=43.12 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=33.4
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCc
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQ 226 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~ 226 (595)
.|+||++.|-|- +-||+++|+.+...|++|+..|+...
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA 40 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 388999999988 56999999999999999999987653
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=85.48 E-value=0.3 Score=45.68 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=31.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
..|+|.|||-|..|.+.|..|+..|++|.+++...
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45799999999999999999999999999998653
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.46 E-value=0.43 Score=44.72 Aligned_cols=37 Identities=27% Similarity=0.234 Sum_probs=33.3
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+||++.|-|- +-||+++|+.+...|++|+..|++.
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL 39 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 378999999987 7799999999999999999999764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=85.32 E-value=0.46 Score=43.89 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=32.7
Q ss_pred ecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 190 LVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 190 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
|+||++.|-|- +-||+++|+.+...|++|+..|++.
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~ 38 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE 38 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 78999999997 5699999999999999999998753
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=85.10 E-value=0.72 Score=43.71 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=35.2
Q ss_pred eeeecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 187 GVSLVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 187 g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
...|+||++.|-| -|.||+++|+.+...|++|++.|++.
T Consensus 20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~ 59 (294)
T d1w6ua_ 20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM 59 (294)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 3579999999998 48999999999999999999999865
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=84.58 E-value=0.48 Score=43.29 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=31.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
..++|.|||.|..|...|..|+..|.+|.++++..
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45789999999999999999999999999999753
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.23 E-value=0.44 Score=46.10 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=32.0
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
+.|+|.|||.|.-|...|..|+..|.+|++++...
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 36899999999999999999999999999998754
|
| >d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=84.19 E-value=0.9 Score=40.94 Aligned_cols=94 Identities=14% Similarity=0.101 Sum_probs=66.1
Q ss_pred HHHHHHhcCCCEEEEECCC-----CcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEE
Q 046427 206 EVARRAKGLGMNVIAHDPY-----AQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 206 ~vA~~l~~~G~~V~~~d~~-----~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili 279 (595)
..++++...|++|++=.-. .+.+...+.|+..+ +.++++ +||+|+..-|.++ ++++.||+|.+++
T Consensus 21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~--------~e~~~lk~~~~li 91 (193)
T d1pjca2 21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLP--------AEYDLMQKDQLLF 91 (193)
T ss_dssp HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCG--------GGGGGCCTTCEEE
T ss_pred HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCCH--------HHHHhhhcCceEE
Confidence 3677788899999985322 24455667788776 455666 6898876554333 3577899999999
Q ss_pred eccCCchhcHHHHHHHHhcCCeeEEEEecCC
Q 046427 280 NVARGGVVDEEALVRALDSGIISQAALDVFT 310 (595)
Q Consensus 280 N~arg~~vd~~aL~~aL~~g~i~ga~lDv~~ 310 (595)
-.--- ....++.++|.+.++...++|.-.
T Consensus 92 ~~l~p--~~~~ell~~l~~~~it~~s~E~ip 120 (193)
T d1pjca2 92 TYLHL--AAARELTEQLMRVGLTAIAYETVE 120 (193)
T ss_dssp ECCCG--GGCHHHHHHHHHHTCEEEEGGGCC
T ss_pred EecCc--ccchHHHHHHHHcCCEEEEeeecc
Confidence 87543 345678999999999777776543
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=84.00 E-value=0.34 Score=45.95 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=34.1
Q ss_pred eeeecCCEEEEEeCC---hHHHHHHHHHhcCCCEEEEECCCC
Q 046427 187 GVSLVGKTLAVMGFG---KVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 187 g~~l~gktvGIIGlG---~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
...|+||++.|-|.+ -||+++|+.|...|++|+..++..
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~ 44 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP 44 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence 357999999999986 599999999999999999887643
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=83.74 E-value=0.46 Score=44.54 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=33.2
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+||++.|-|- +-||+++|+++...|++|+..|++.
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 45 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA 45 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 589999999987 5699999999999999999998754
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=83.69 E-value=0.37 Score=44.92 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=32.1
Q ss_pred ecCCEEEEEeC-Ch--HHHHHHHHHhcCCCEEEEECCCC
Q 046427 190 LVGKTLAVMGF-GK--VGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 190 l~gktvGIIGl-G~--IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
|+||++.|.|. |. ||+++|+.+...|++|+..+++.
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~ 42 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 42 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence 88999999996 54 99999999999999999987654
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=83.66 E-value=1.1 Score=39.54 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=58.5
Q ss_pred EEEEEe-CChHHHHHHHHHhcC-CCEEEEE---CC--CC--cHHHHHH--cCC---c---ccCHHHhccccCEEEEeCCC
Q 046427 194 TLAVMG-FGKVGTEVARRAKGL-GMNVIAH---DP--YA--QADRARA--TGV---G---LVSFEEAISTADFISLHMPL 256 (595)
Q Consensus 194 tvGIIG-lG~IG~~vA~~l~~~-G~~V~~~---d~--~~--~~~~a~~--~g~---~---~~~l~ell~~aD~V~l~~Pl 256 (595)
+|+|+| -|-.|+++.+.|... .+++... .. .. ....... .+. . ..+.+....++|++++|+|.
T Consensus 3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp~ 82 (179)
T d2g17a1 3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATAH 82 (179)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSCH
T ss_pred EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccccc
Confidence 799999 599999999999987 6676553 11 11 1111100 011 1 11345567889999999994
Q ss_pred ChhccccccHHHHhcCCCceEEEeccCCchhc-HHHHHHHH
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVARGGVVD-EEALVRAL 296 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~arg~~vd-~~aL~~aL 296 (595)
.. ...+. -...+.+..+||.+..--.+ .....++.
T Consensus 83 ~~-s~~~~----~~~~~~~~~vIDlSadfRl~~~~~~~~~y 118 (179)
T d2g17a1 83 EV-SHDLA----PQFLQAGCVVFDLSGAFRVNDRAFYEKYY 118 (179)
T ss_dssp HH-HHHHH----HHHHHTTCEEEECSSTTSSSCHHHHHHHH
T ss_pred hh-HHHHh----hhhhhcCceeecccccccccccccccccc
Confidence 22 22222 22256789999999544444 44444443
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.59 E-value=0.31 Score=47.00 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=33.6
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+||++.|-|- +-||+++|+.+...|++|++.|++.
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~ 46 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL 46 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 499999999987 5699999999999999999999865
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=83.40 E-value=0.66 Score=43.89 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=33.5
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+||++.|-|- +-||+++|+.+...|++|+..|++.
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA 39 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 378999999987 6899999999999999999999864
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=83.29 E-value=1.9 Score=39.95 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=33.0
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+||++.|-|- +-||+++|+++...|++|+..|++.
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 40 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS 40 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 388999999986 6699999999999999999999864
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=82.98 E-value=0.87 Score=42.73 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=33.2
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
+|+||++.|-|- +-||+++|+.|...|++|+..+++.
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~ 41 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK 41 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 699999999886 7799999999999999999988764
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=82.97 E-value=0.74 Score=42.93 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=33.2
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|.||++.|.|- +-||+++|+.|...|++|+.+|++.
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~ 44 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ 44 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 588999999987 5799999999999999999999754
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=82.73 E-value=0.64 Score=42.45 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=33.8
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.-.+|+|.|||-|..|-..|..|+..|++|..++...
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence 3578999999999999999999999999999998754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=82.39 E-value=0.55 Score=43.97 Aligned_cols=37 Identities=35% Similarity=0.339 Sum_probs=32.9
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+||++.|-|- +-||+++|+++...|++|+..|++.
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~ 40 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE 40 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 489999999986 5699999999999999999999754
|
| >d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=82.35 E-value=2.2 Score=41.07 Aligned_cols=94 Identities=14% Similarity=0.201 Sum_probs=60.6
Q ss_pred eecCCEEEEEeC---ChHHHHHHHHHhcCC-CEEEEECCCC---cH---HHHHHcCCc---ccCHHHhccccCEEEEeCC
Q 046427 189 SLVGKTLAVMGF---GKVGTEVARRAKGLG-MNVIAHDPYA---QA---DRARATGVG---LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 189 ~l~gktvGIIGl---G~IG~~vA~~l~~~G-~~V~~~d~~~---~~---~~a~~~g~~---~~~l~ell~~aD~V~l~~P 255 (595)
.+.|++|+++|- +++..+.+..+..+| +++..+.|.. .. +.+.+.+.. ..++++.++++|+|....-
T Consensus 151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~ 230 (310)
T d1tuga1 151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV 230 (310)
T ss_dssp CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCC
T ss_pred CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeeccc
Confidence 388999999997 788999999999885 7888887642 21 223344432 2379999999999975321
Q ss_pred CChh----------ccccccHHHHhcCCCceEEEecc
Q 046427 256 LTPA----------TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 256 lt~~----------t~~li~~~~l~~mk~gailiN~a 282 (595)
-... -...++.+.++.++++++|.-|.
T Consensus 231 ~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcL 267 (310)
T d1tuga1 231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 267 (310)
T ss_dssp CGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCS
T ss_pred chhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCC
Confidence 1100 01224555566666666666553
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=82.34 E-value=1.7 Score=40.62 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=33.1
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|.||++.|-|- +-||+++|+++...|++|+..|++.
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD 40 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 489999999986 5699999999999999999999764
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=82.33 E-value=1.1 Score=41.23 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 192 GKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 192 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
-|+|.|.|- |.||+.+++.|...|++|++.++..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~ 37 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 37 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 368999996 9999999999999999999998765
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=82.30 E-value=1.2 Score=39.50 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=63.2
Q ss_pred eecCCEEEEEeCC--hHHHHHHHHHhcCCCEEEEECCCC---cHH-------HHHHcCCc---ccCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGFG--KVGTEVARRAKGLGMNVIAHDPYA---QAD-------RARATGVG---LVSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~---~~~-------~a~~~g~~---~~~l~ell~~aD~V~l~ 253 (595)
.+.|.+|++||=| ++..+++..+..|||++....|.. +.. .....|.. ..++++.++.+|+|..-
T Consensus 2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 81 (183)
T d1duvg2 2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD 81 (183)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence 3678999999955 799999999999999999988742 111 12233432 23799999999999774
Q ss_pred CCCCh----h----------ccccccHHHHhcCCCceEEEecc
Q 046427 254 MPLTP----A----------TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 254 ~Plt~----~----------t~~li~~~~l~~mk~gailiN~a 282 (595)
.=... + ....++.......+++++|.-|.
T Consensus 82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L 124 (183)
T d1duvg2 82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL 124 (183)
T ss_dssp CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence 32110 0 01223344445577888888876
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.13 E-value=1.6 Score=40.54 Aligned_cols=36 Identities=25% Similarity=0.161 Sum_probs=32.1
Q ss_pred ecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 190 LVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 190 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
+.||++.|-|- +-||+++|+.+...|++|+..|++.
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~ 37 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL 37 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46999999988 5699999999999999999999865
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=82.09 E-value=0.6 Score=43.94 Aligned_cols=38 Identities=32% Similarity=0.323 Sum_probs=33.9
Q ss_pred eeecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 188 VSLVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 188 ~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
..|+||++.|-| -+.||+++|+.+...|++|++.+++.
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~ 52 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS 52 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 459999999998 58899999999999999999987754
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=81.44 E-value=0.58 Score=41.35 Aligned_cols=102 Identities=18% Similarity=0.277 Sum_probs=55.2
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH-HHHcCCccc--CH-HHhccccCEEEEeCCCChhccccccH---
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR-ARATGVGLV--SF-EEAISTADFISLHMPLTPATSKMFND--- 266 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~g~~~~--~l-~ell~~aD~V~l~~Plt~~t~~li~~--- 266 (595)
+|||=|||+||+.+.|.+..-+.+|.+.+.....+. +.-+.+..+ .+ .++-...|.+++ ......+.+.
T Consensus 2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i----~g~~I~~~~~~~p 77 (168)
T d2g82a1 2 KVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYV----DGKAIRATAVKDP 77 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEE----TTEEEEEECCSSG
T ss_pred EEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEe----cceeEEEEecCCh
Confidence 799999999999999988877888887754333322 111111100 11 122234455554 2222333332
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
+.+..-+-|+-+|=-+.|.--+.+.+..-|+.|
T Consensus 78 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g 110 (168)
T d2g82a1 78 KEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG 110 (168)
T ss_dssp GGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT
T ss_pred HHCcccccCCceeEeccccccchHHhhhhhccc
Confidence 222222334433333466666777777777766
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=81.32 E-value=0.98 Score=43.52 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=31.5
Q ss_pred ecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 190 LVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 190 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
-.||+|.|.|- |.||+.+++.|...|++|++..++.
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~ 45 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA 45 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCc
Confidence 46999999976 9999999999999999999876643
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=81.08 E-value=0.64 Score=44.70 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=32.8
Q ss_pred ecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 190 LVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 190 l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.+||+|.|.| .|-||+.+++.|...|.+|+++|+..
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4689999998 69999999999999999999999765
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=80.96 E-value=0.35 Score=42.89 Aligned_cols=35 Identities=34% Similarity=0.704 Sum_probs=28.5
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEE-CCCCcHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAH-DPYAQAD 228 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~~~~~ 228 (595)
+|||=|||+||+.+.|.+...+.+|.+. |+..+.+
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~ 37 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALE 37 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHH
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHH
Confidence 6899999999999999988778887776 5555443
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.86 E-value=0.45 Score=42.30 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=57.5
Q ss_pred CCEEEEEe-CChHHHHHHHHHhcCCCE-EEEECCCC-c-HHHHHHcCCcc------cCHHHhccc-----cCEEEEeCCC
Q 046427 192 GKTLAVMG-FGKVGTEVARRAKGLGMN-VIAHDPYA-Q-ADRARATGVGL------VSFEEAIST-----ADFISLHMPL 256 (595)
Q Consensus 192 gktvGIIG-lG~IG~~vA~~l~~~G~~-V~~~d~~~-~-~~~a~~~g~~~------~~l~ell~~-----aD~V~l~~Pl 256 (595)
+++|.|.| .|.+|....+.++.+|++ |++.+... . .....+.|... .++.+.+++ .|+|+=++-
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG- 109 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG- 109 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-
Confidence 46899999 599999999999999985 55555433 2 22344667532 145554444 888888774
Q ss_pred ChhccccccHHHHhcCCCceEEEeccC
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
.++ -...++.++++..++.++.
T Consensus 110 -g~~----~~~~~~~l~~~G~iv~~G~ 131 (187)
T d1vj1a2 110 -GDI----SNTVISQMNENSHIILCGQ 131 (187)
T ss_dssp -HHH----HHHHHTTEEEEEEEEEC--
T ss_pred -chh----HHHHhhhccccccEEEecc
Confidence 111 2456778899999988863
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=80.86 E-value=0.55 Score=43.83 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=33.3
Q ss_pred ecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCc
Q 046427 190 LVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQ 226 (595)
Q Consensus 190 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~ 226 (595)
|.||++.|-|- +-||+++|+.+...|++|+..|++..
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~ 40 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE 40 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 78999999985 78999999999999999999988653
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.83 E-value=0.72 Score=42.08 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=46.1
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCC--EEEEECCCCcH---HHHHHcCCc------ccCHHHhccccCEEEEeCCC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGM--NVIAHDPYAQA---DRARATGVG------LVSFEEAISTADFISLHMPL 256 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~---~~a~~~g~~------~~~l~ell~~aD~V~l~~Pl 256 (595)
...+|+|.|.|. |.||+.+++.|..-|. +|++++++... ......... ..++.+.++.+|+++.|+..
T Consensus 11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~ 90 (232)
T d2bkaa1 11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT 90 (232)
T ss_dssp HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence 357889999985 9999999999986664 89998875421 111111111 12456678889999887753
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.79 E-value=0.5 Score=44.02 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=32.4
Q ss_pred ecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 190 LVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 190 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
|.||++.|.|- +.||+++|+.+...|++|++.|++.
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~ 40 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE 40 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 88999988876 7899999999999999999998763
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=80.55 E-value=0.85 Score=39.93 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=38.7
Q ss_pred eecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCc
Q 046427 189 SLVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 189 ~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~ 236 (595)
...|.+|.|-| .|-+|....+.++.+|++|++..... ..+..+++|..
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad 70 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS 70 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc
Confidence 34566888988 59999999999999999999987755 45667777764
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=80.50 E-value=1.1 Score=39.53 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=52.8
Q ss_pred EEEEEeCChHHHHHHHHHhc---CCCEEEEECCCCcHHHH-HHcCCccc--CH-HHhccccCEEEEeCCCChhccccccH
Q 046427 194 TLAVMGFGKVGTEVARRAKG---LGMNVIAHDPYAQADRA-RATGVGLV--SF-EEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~---~G~~V~~~d~~~~~~~a-~~~g~~~~--~l-~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
+|||=|||+||+.+.|.+.. .+.+|++.+.....+.. .-+.+..+ .+ .++-..-|.+++ ......+.+.
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~i----ng~~I~~~~~ 77 (169)
T d1hdgo1 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIV----DGKEIKVFAE 77 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEE----TTEEEEEECC
T ss_pred EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEE----CCEEEEEEeC
Confidence 79999999999999998763 35788887543333321 11111100 01 111123344444 2223333332
Q ss_pred HHHhcC-----CCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 267 EAFFKM-----KKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 267 ~~l~~m-----k~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
...+.+ .-+ ++++| +|.--+.+.+...|+.|
T Consensus 78 ~~p~~i~W~~~gvD-~ViEc-TG~f~t~~~~~~hl~~G 113 (169)
T d1hdgo1 78 PDPSKLPWKDLGVD-FVIES-TGVFRNREKAELHLQAG 113 (169)
T ss_dssp SSGGGSCHHHHTCC-EEEEC-SSSCCBHHHHTHHHHTT
T ss_pred CChhhCCccccCCC-EEEEe-cceeccccchhhhccCC
Confidence 222222 222 67776 45555677777777776
|