Citrus Sinensis ID: 046504

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
KNTSVFCRVPLHFAMHKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTGDSD
Secondary Structure (PSIPRED)
ccccEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHccccccHHHHHHHHHHHHHHcHHcHHccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccHHHHccccccHHHHHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHccccc
Coil and Loop (DISEMBL)
kntsvfcrvplhfamhknyghVKLWSVICSLIFNtflhseyggpgtllvlPFIDMAdtlnerglpggpQAARAAVKWAQRHVdkdwkewtgdsd
Flexible Loop (DISEMBL)
kntsvfcrvPLHFAMHKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDkdwkewtgdsd
Low Complexity Region (SEG)
KNTSVFCRVPLHFAMHKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTGDSD
Disordered region (IsUnstruct)
****VFCRVPLHFAMHKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGL******ARAAVKWAQRHVDKDWK*******
Disordered Region (DISOPRED)
***SVFCRVPLHFAMHKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPG*PQAARAAVKWAQRHVDKDW*EW*****
Disordered Region (DISEMBL)
KNTSVFCRVPLHFAMHKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPG***************VDKDWKEWTGDSD
Disordered Region (DISPRO)
*NTSVFCRVPLHFAMHKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KNTSVFCRVPLHFAMHKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTGDSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
449434881	169	PREDICTED: uncharacterized protein LOC10	0.691	0.384	0.846	9e-28
255588186	188	conserved hypothetical protein [Ricinus	0.680	0.340	0.890	1e-27
18391169	179	uncharacterized protein [Arabidopsis tha	0.680	0.357	0.859	2e-27
297843868	180	hypothetical protein ARALYDRAFT_471166 [	0.680	0.355	0.859	8e-27
351734434	173	uncharacterized protein LOC100306067 pre	0.712	0.387	0.823	1e-26
224108113	96	predicted protein [Populus trichocarpa]	0.680	0.666	0.828	7e-26
225424758	192	PREDICTED: uncharacterized protein LOC10	0.680	0.333	0.861	1e-25
147777968	170	hypothetical protein VITISV_018708 [Viti	0.680	0.376	0.861	1e-25
357516739	172	hypothetical protein MTR_8g063150 [Medic	0.670	0.366	0.841	2e-25
388507390	182	unknown [Lotus japonicus]	0.712	0.368	0.776	4e-25

>gi|449434881|ref|XP_004135224.1| PREDICTED: uncharacterized protein LOC101210245 [Cucumis sativus] gi|449527396|ref|XP_004170697.1| PREDICTED: uncharacterized LOC101210245 [Cucumis sativus]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 55/65 (84%), Positives = 61/65 (93%)

Query: 28  ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWK 87
           IC+ IFNTF+H+EYGGPGTLLVLPFIDM+D +NERGLPGGPQAARAAVKWAQ HVDKDW 
Sbjct: 102 ICTEIFNTFMHTEYGGPGTLLVLPFIDMSDAINERGLPGGPQAARAAVKWAQDHVDKDWN 161

Query: 88  EWTGD 92
           +WTGD
Sbjct: 162 QWTGD 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588186|ref|XP_002534527.1| conserved hypothetical protein [Ricinus communis] gi|223525108|gb|EEF27857.1| conserved hypothetical protein [Ricinus communis]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/64 (89%), Positives = 61/64 (95%)

Query: 28  ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWK 87
           IC+ IF+TFLHSEYGGPGTLLV+PF DMADT+NERGLPGGPQAARAAVKWAQ HVDKDWK
Sbjct: 121 ICTEIFSTFLHSEYGGPGTLLVIPFCDMADTINERGLPGGPQAARAAVKWAQDHVDKDWK 180

Query: 88  EWTG 91
           EWTG
Sbjct: 181 EWTG 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18391169|ref|NP_563872.1| uncharacterized protein [Arabidopsis thaliana] gi|145323826|ref|NP_001077502.1| uncharacterized protein [Arabidopsis thaliana] gi|5091545|gb|AAD39574.1|AC007067_14 T10O24.14 [Arabidopsis thaliana] gi|21554792|gb|AAM63692.1| unknown [Arabidopsis thaliana] gi|149944329|gb|ABR46207.1| At1g10522 [Arabidopsis thaliana] gi|332190468|gb|AEE28589.1| uncharacterized protein [Arabidopsis thaliana] gi|332190469|gb|AEE28590.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/64 (85%), Positives = 59/64 (92%)

Query: 28  ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWK 87
           +C+ IF TFL SEYGGPGTLLV+PFIDMADTLNER LPGGPQAARAA+KWAQ HVDKDWK
Sbjct: 114 VCTEIFETFLRSEYGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWK 173

Query: 88  EWTG 91
           EWTG
Sbjct: 174 EWTG 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843868|ref|XP_002889815.1| hypothetical protein ARALYDRAFT_471166 [Arabidopsis lyrata subsp. lyrata] gi|297335657|gb|EFH66074.1| hypothetical protein ARALYDRAFT_471166 [Arabidopsis lyrata subsp. lyrata]

 Score =  124 bits (310), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 55/64 (85%), Positives = 58/64 (90%)

Query: 28  ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWK 87
           IC+ IF TFL SEYGGPGTLLV+PFIDMADTL ER LPGGPQAARAA+KWAQ HVDKDWK
Sbjct: 116 ICTEIFGTFLRSEYGGPGTLLVIPFIDMADTLKERELPGGPQAARAAIKWAQDHVDKDWK 175

Query: 88  EWTG 91
           EWTG
Sbjct: 176 EWTG 179

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734434|ref|NP_001237024.1| uncharacterized protein LOC100306067 precursor [Glycine max] gi|255627431|gb|ACU14060.1| unknown [Glycine max]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/68 (82%), Positives = 63/68 (92%), Gaps = 1/68 (1%)

Query: 28  ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWK 87
           IC+ IF+TFLHSEYGGPGTLLVLPF+DMAD LNE+GLPGGPQAARAA+KWAQ HVDKDWK
Sbjct: 104 ICTEIFSTFLHSEYGGPGTLLVLPFVDMADALNEQGLPGGPQAARAAIKWAQDHVDKDWK 163

Query: 88  EWT-GDSD 94
            WT GD++
Sbjct: 164 GWTNGDNN 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108113|ref|XP_002314726.1| predicted protein [Populus trichocarpa] gi|222863766|gb|EEF00897.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/64 (82%), Positives = 59/64 (92%)

Query: 28 ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWK 87
          IC+ IF+TFLH+EYGGPGTLLV PFIDMADT+NE+GLPGGP+AAR AVKWAQ HVD DWK
Sbjct: 29 ICTEIFSTFLHAEYGGPGTLLVTPFIDMADTVNEQGLPGGPEAARVAVKWAQAHVDNDWK 88

Query: 88 EWTG 91
          EWTG
Sbjct: 89 EWTG 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424758|ref|XP_002268027.1| PREDICTED: uncharacterized protein LOC100260319 [Vitis vinifera] gi|296086507|emb|CBI32096.3| unnamed protein product [Vitis vinifera]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/65 (86%), Positives = 60/65 (92%), Gaps = 1/65 (1%)

Query: 28  ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWK 87
           IC+ IF+TFLH+EYGGPGTLLV+PFIDMADTLNERGLPG  QAARAAVKWAQ HVDKDW 
Sbjct: 126 ICTEIFSTFLHTEYGGPGTLLVIPFIDMADTLNERGLPGS-QAARAAVKWAQDHVDKDWN 184

Query: 88  EWTGD 92
           EWTGD
Sbjct: 185 EWTGD 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777968|emb|CAN65133.1| hypothetical protein VITISV_018708 [Vitis vinifera]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/65 (86%), Positives = 60/65 (92%), Gaps = 1/65 (1%)

Query: 28  ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWK 87
           IC+ IF+TFLH+EYGGPGTLLV+PFIDMADTLNERGLP G QAARAAVKWAQ HVDKDW 
Sbjct: 104 ICTEIFSTFLHTEYGGPGTLLVIPFIDMADTLNERGLP-GSQAARAAVKWAQDHVDKDWN 162

Query: 88  EWTGD 92
           EWTGD
Sbjct: 163 EWTGD 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516739|ref|XP_003628658.1| hypothetical protein MTR_8g063150 [Medicago truncatula] gi|355522680|gb|AET03134.1| hypothetical protein MTR_8g063150 [Medicago truncatula] gi|388491344|gb|AFK33738.1| unknown [Medicago truncatula]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 57/63 (90%)

Query: 29  CSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKE 88
           C+ IF+TFLHSEYGGPGTLLV PFIDMAD +NERGLPGGPQAARAA+ WAQ HVDKDW E
Sbjct: 105 CTEIFSTFLHSEYGGPGTLLVDPFIDMADIVNERGLPGGPQAARAAINWAQAHVDKDWNE 164

Query: 89  WTG 91
           WTG
Sbjct: 165 WTG 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507390|gb|AFK41761.1| unknown [Lotus japonicus]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/67 (77%), Positives = 57/67 (85%)

Query: 28  ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWK 87
           +C+ IF +FLHSEYGGPGTLLV PF DMAD ++ERGLPGGPQAAR AVKWAQ HVDKDW 
Sbjct: 114 VCTEIFGSFLHSEYGGPGTLLVNPFADMADAVSERGLPGGPQAARVAVKWAQNHVDKDWN 173

Query: 88  EWTGDSD 94
           EWTG  D
Sbjct: 174 EWTGGGD 180

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
TAIR|locus:505006116	179	PRIN2 "AT1G10522" [Arabidopsis	0.680	0.357	0.859	1e-27

TAIR|locus:505006116 PRIN2 "AT1G10522" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 55/64 (85%), Positives = 59/64 (92%)

Query:    28 ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWK 87
             +C+ IF TFL SEYGGPGTLLV+PFIDMADTLNER LPGGPQAARAA+KWAQ HVDKDWK
Sbjct:   114 VCTEIFETFLRSEYGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWK 173

Query:    88 EWTG 91
             EWTG
Sbjct:   174 EWTG 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.469    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        94   0.00091  102 3  11 22  0.50    29
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  146 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.00u 0.10s 11.10t   Elapsed:  00:00:02
  Total cpu time:  11.00u 0.10s 11.10t   Elapsed:  00:00:02
  Start:  Sat May 11 15:01:20 2013   End:  Sat May 11 15:01:22 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009642 "response to light intensity" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0042646 "plastid nucleoid" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
PRK13762	322	tRNA-modifying enzyme; Provisional	87.32

>PRK13762 tRNA-modifying enzyme; Provisional

Probab=87.32  E-value=1.7  Score=33.98  Aligned_cols=63  Identities=17%  Similarity=0.308  Sum_probs=42.7

Q ss_pred             cceeeecccccc----cccccch-hHHHHHHhHHHHHHHhhhhcCC----------------------Cceeechh-hhH
Q 046504            3 TSVFCRVPLHFA----MHKNYGH-VKLWSVICSLIFNTFLHSEYGG----------------------PGTLLVLP-FID   54 (94)
Q Consensus         3 ~~~~~~~~~~f~----~~~~~Gd-~~~vV~vCteIF~~FLh~eYgG----------------------pGTLlV~P-F~D   54 (94)
                      .-+||-.|....    ...-+=+ +++||+---+.-..|+.. |+|                      .|+=++.| +.+
T Consensus        71 rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g-~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~p~l~e  149 (322)
T PRK13762         71 RCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSG-YKGNPKVDREKFEEAMEPKHVAISLSGEPTLYPYLPE  149 (322)
T ss_pred             cCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhc-cCCCCCCCHHHhhhccCCCEEEEeCCccccchhhHHH
Confidence            347887765432    1222333 888888886666777744 766                      57777777 558


Q ss_pred             HHHHHhhCCCCC
Q 046504           55 MADTLNERGLPG   66 (94)
Q Consensus        55 M~~~l~E~glPG   66 (94)
                      ++..++++|+.-
T Consensus       150 li~~~k~~Gi~~  161 (322)
T PRK13762        150 LIEEFHKRGFTT  161 (322)
T ss_pred             HHHHHHHcCCCE
Confidence            899999999863

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00