Citrus Sinensis ID: 046615

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MGCFISTPNAPGETRRKPKNVGEIAVFVPGLRIPKPVDFAEPIGDELSRRLVERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQALEDYLPILLGLVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQTAPALPDFQLSLKPEDFILPSVDSSWKEN
cccccccccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
cccEEcccccccccccccccccEEEEEEccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHHHHEEHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccEccccccccccccccccccc
mgcfistpnapgetrrkpknvgeiavfvpglripkpvdfaepiGDELSRRLVERLSALRTRIVVMagqeapmatkprrkatqhggsTLADLQQALEDYLPILLGLVEngnqlqdklqfpwlnqeddaeettMANSWYEILSVLQMMTMLSLSQANLLllpktstdgyqskvsVECRRESIDMFLKAAGyldfavnnvlpqlppeirknlpmdltEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEAQENIVnlplangwgdkhrLFVRWKYAEAKAAAYYLHGLildegktegCSEMAAAALRAADEFLKEskmtcesfhmtpplsrnpplwgtskylsekipkdissrlpvnpgpqnyEMILQtapalpdfqlslkpedfilpsvdsswken
mgcfistpnapgetrrkpknvgEIAVfvpglripkpvdfAEPIGDELSRRLVERLSALRTRIVvmagqeapmatkprrkaTQHGGSTLADLQQALEDYLPILLGLVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFhmtpplsrnpplwGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQTAPALPDFQLSLKPEDfilpsvdsswken
MGCFISTPNAPGETRRKPKNVGEIAVFVPGLRIPKPVDFAEPIGDELSRRLVERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQALEDYLPILLGLVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMlslsqanllllPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWkyaeakaaayyLHGLILDEGKTEGCSEMaaaalraaDEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQTAPALPDFQLSLKPEDFILPSVDSSWKEN
********************VGEIAVFVPGLRIPKPVDFAEPIGDELSRRLVERLSALRTRIVVMA**********************ADLQQALEDYLPILLGLVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEF****************************************************MILQTAPALPDFQL*******************
**********************EIAVFVPGLRIPKPVDFAEPIGDELSRRLVERLSALRTRIVVMAGQE*******************ADLQQALEDYLPILLGLVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLL*****************RESIDMFLKAAGYLDFAVNNVL**************LTEGVLRAFCMQSLGQGVDVQLGMAIDSV***VAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTC*************PLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQTAPALPDFQLSLKPEDFILPSV*******
MGCFISTPNAPGETRRKPKNVGEIAVFVPGLRIPKPVDFAEPIGDELSRRLVERLSALRTRIVVMAGQE*****************TLADLQQALEDYLPILLGLVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQTAPALPDFQLSLKPEDFILPSVDSSWKEN
******************KNVGEIAVFVPGLRIPKPVDFAEPIGDELSRRLVERLSALRTRIVVMAGQEAP*************GSTLADLQQALEDYLPILLGLVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTST*G*QSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQTAPALPDFQLSLKPEDFILPSVDSSW***
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MGCFISTPNAPGETRRKPKNVGEIAVFVPGLRIPKPVDFAEPIGDELSRRLVERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQALEDYLPILLGLVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQTAPALPDFQLSLKPEDFILPSVDSSWKEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query409
359489921426 PREDICTED: uncharacterized protein LOC10 1.0 0.960 0.707 1e-170
356535288425 PREDICTED: uncharacterized protein LOC10 0.995 0.957 0.710 1e-170
224076890425 predicted protein [Populus trichocarpa] 0.997 0.96 0.689 1e-169
356576604425 PREDICTED: uncharacterized protein LOC10 0.995 0.957 0.708 1e-169
255557094420 conserved hypothetical protein [Ricinus 0.997 0.971 0.699 1e-166
356559999425 PREDICTED: uncharacterized protein LOC10 0.992 0.955 0.681 1e-166
255544151419 conserved hypothetical protein [Ricinus 1.0 0.976 0.712 1e-163
297842093424 hypothetical protein ARALYDRAFT_895200 [ 0.997 0.962 0.657 1e-162
15219459419 Endosomal targeting BRO1-like domain-con 0.995 0.971 0.656 1e-161
356531017425 PREDICTED: uncharacterized protein LOC10 0.992 0.955 0.676 1e-160
>gi|359489921|ref|XP_002264045.2| PREDICTED: uncharacterized protein LOC100266486 [Vitis vinifera] gi|297737210|emb|CBI26411.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 290/410 (70%), Positives = 348/410 (84%), Gaps = 1/410 (0%)

Query: 1   MGCFISTPNAPGETRRKPKNVGEIAVFVPGLRIPKPVDFAEPIGDELSRRLVERLSALRT 60
           MGCF+STP   G  RR+P N+GE++VF+PG RIPKP+DF++ +GD LS+ L+ERL+ALRT
Sbjct: 1   MGCFVSTPTDTGGNRRRPGNIGEVSVFIPGFRIPKPLDFSKSLGDHLSKNLLERLTALRT 60

Query: 61  RIVVMAGQEAPMATKPRRK-ATQHGGSTLADLQQALEDYLPILLGLVENGNQLQDKLQFP 119
           RIVVMAG EAP  T+ RRK ATQHGGSTLADL QALEDYLP+LLGLV++G+QLQ K+QF 
Sbjct: 61  RIVVMAGHEAPTITRTRRKTATQHGGSTLADLLQALEDYLPVLLGLVKDGSQLQHKVQFV 120

Query: 120 WLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRES 179
           W+NQEDDAEETTM+N+WYE+LSVL +M ML LSQANLLLLP+TS+DGYQ KVS E RR S
Sbjct: 121 WVNQEDDAEETTMSNAWYEVLSVLHLMAMLLLSQANLLLLPRTSSDGYQPKVSEESRRAS 180

Query: 180 IDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAID 239
           ID+FLKAAGYLD AV +VLPQL  E+R+NLP+DL EGVLRA C+Q+LGQGVD+QLGMAID
Sbjct: 181 IDIFLKAAGYLDCAVKHVLPQLSSELRRNLPVDLAEGVLRALCLQALGQGVDIQLGMAID 240

Query: 240 SVNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHG 299
           S  AT+AVKRR ACE+VKYW +AQ+NI+NLPL NGWG+KH+LFV+WKY EAKA AYY HG
Sbjct: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLTNGWGEKHKLFVKWKYVEAKATAYYYHG 300

Query: 300 LILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIP 359
           LILDEG TE    MA AAL+AADE+LKESK  CE+F+M PPLSRNPPLWGT KYLSEKIP
Sbjct: 301 LILDEGNTEKSHGMAVAALQAADEYLKESKRACEAFNMAPPLSRNPPLWGTMKYLSEKIP 360

Query: 360 KDISSRLPVNPGPQNYEMILQTAPALPDFQLSLKPEDFILPSVDSSWKEN 409
           KD SS++ +N    +++ I++TAP LPDF L+LKP+D+ LP VD SW +N
Sbjct: 361 KDTSSKVRINRDLYSHQRIMETAPQLPDFALALKPDDYQLPPVDPSWNDN 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356535288|ref|XP_003536180.1| PREDICTED: uncharacterized protein LOC100813397 [Glycine max] Back     alignment and taxonomy information
>gi|224076890|ref|XP_002305035.1| predicted protein [Populus trichocarpa] gi|118488314|gb|ABK95976.1| unknown [Populus trichocarpa] gi|222847999|gb|EEE85546.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356576604|ref|XP_003556420.1| PREDICTED: uncharacterized protein LOC100781733 [Glycine max] Back     alignment and taxonomy information
>gi|255557094|ref|XP_002519579.1| conserved hypothetical protein [Ricinus communis] gi|223541237|gb|EEF42790.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356559999|ref|XP_003548283.1| PREDICTED: uncharacterized protein LOC100809057 [Glycine max] Back     alignment and taxonomy information
>gi|255544151|ref|XP_002513138.1| conserved hypothetical protein [Ricinus communis] gi|223548149|gb|EEF49641.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297842093|ref|XP_002888928.1| hypothetical protein ARALYDRAFT_895200 [Arabidopsis lyrata subsp. lyrata] gi|297334769|gb|EFH65187.1| hypothetical protein ARALYDRAFT_895200 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15219459|ref|NP_177482.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|42572093|ref|NP_974137.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|42572095|ref|NP_974138.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|11120790|gb|AAG30970.1|AC012396_6 hypothetical protein [Arabidopsis thaliana] gi|18252173|gb|AAL61919.1| unknown protein [Arabidopsis thaliana] gi|54606850|gb|AAV34773.1| At1g73390 [Arabidopsis thaliana] gi|332197332|gb|AEE35453.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|332197333|gb|AEE35454.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|332197334|gb|AEE35455.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356531017|ref|XP_003534075.1| PREDICTED: uncharacterized protein LOC100820472 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query409
TAIR|locus:2206845419 AT1G73390 "AT1G73390" [Arabido 0.995 0.971 0.595 1.9e-131
TAIR|locus:2030893405 AT1G17940 "AT1G17940" [Arabido 0.987 0.997 0.583 7.8e-126
TAIR|locus:2159103401 AT5G14020 [Arabidopsis thalian 0.946 0.965 0.347 5.7e-59
TAIR|locus:2206845 AT1G73390 "AT1G73390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1289 (458.8 bits), Expect = 1.9e-131, P = 1.9e-131
 Identities = 243/408 (59%), Positives = 303/408 (74%)

Query:     1 MGCFISTPNAPGETRRKPKNVGEIAVFVPGLRIPKPVDFAEPIGDELSRRLVERLSALRT 60
             MGCF S PN  G  RRKP ++G+++V+VPGLRIPKPV+F++ +GD+L + LVERL+ALRT
Sbjct:     1 MGCFASRPNDTGGNRRKPTSIGDVSVYVPGLRIPKPVEFSQSLGDQLPKTLVERLTALRT 60

Query:    61 RIVVMAGQEAPMATKPRRKATQHGGSTLADLQQALEDYLPILLGLVENGNQLQDKLQFPW 120
             RIVVMA QE P  T+ RRK TQHGGSTLADL  ALEDY+P+LLGL ++G+ LQ K+QF W
Sbjct:    61 RIVVMANQEGPTITRTRRK-TQHGGSTLADLHHALEDYIPVLLGLTKDGSHLQFKVQFNW 119

Query:   121 LNQEDDAEETTMANSWYEILSVLQMMTMXXXXXXXXXXXPKTSTDGYQSKVSVECRRESI 180
             +NQED+ EET M+N WYEILSVL +M M           P+ S+DGY  K+S E RR SI
Sbjct:   120 VNQEDEEEETAMSNVWYEILSVLHLMAMLQMSQANLLLLPRGSSDGYHPKISEENRRASI 179

Query:   181 DMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDS 240
             D+FLKAAGYLD AV +VLP    E R++LP+DL EG LRA C+Q+LGQGVD+QLGMAIDS
Sbjct:   180 DIFLKAAGYLDCAVKHVLPHFSTEQRRSLPIDLAEGALRALCLQALGQGVDIQLGMAIDS 239

Query:   241 VNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWXXXXXXXXXXXLHGL 300
               AT+AVKRR +CE+VKYW +AQ+N++NLPLANGWG+KH LFV+W            HGL
Sbjct:   240 AKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHMLFVKWKYVEAKAAAYYYHGL 299

Query:   301 ILDEGKTEGCSEMXXXXXXXXDEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPK 360
             ILDEG TE    M        DE LKESK   E+F+ + P SR P L+GT KYLSEKIPK
Sbjct:   300 ILDEGNTEKSHGMAVAALQAADECLKESKKASEAFNTSSPTSRTPSLFGTMKYLSEKIPK 359

Query:   361 DISSRLPVNPGPQNYEMILQTAPALPDFQLSLKPEDFILPSVDSSWKE 408
             + SS++ +N    +YE I++TAP LPDF L+LKP+++ LPSVD+SW E
Sbjct:   360 ETSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLPSVDASWSE 407
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
TAIR|locus:2030893 AT1G17940 "AT1G17940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159103 AT5G14020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00013868001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (426 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
cd09034345 cd09034, BRO1_Alix_like, Protein-interacting Bro1- 8e-74
pfam03097374 pfam03097, BRO1, BRO1-like domain 3e-43
smart01041381 smart01041, BRO1, BRO1-like domain 2e-33
cd09245413 cd09245, BRO1_UmRIM23-like, Protein-interacting, B 3e-05
>gnl|CDD|185761 cd09034, BRO1_Alix_like, Protein-interacting Bro1-like domain of mammalian Alix and related domains Back     alignment and domain information 
 Score =  233 bits (597), Expect = 8e-74
 Identities = 115/343 (33%), Positives = 163/343 (47%), Gaps = 50/343 (14%)

Query: 23  EIAVFVPGLRIPKPVDFAEPIGDELSRRLVERLSALRTRIVVMAGQEAPMATKPRRKATQ 82
           ++ V +    IPK     E         L+E+LS LR  IV                  Q
Sbjct: 13  DVKVPLSK-FIPKNYGELE---ATAVEDLIEKLSKLRNNIVTE----------------Q 52

Query: 83  HGGSTLADLQQALEDYLPILLGLV--ENGNQLQDKLQFPWLNQEDDAEETTMANSWYEIL 140
           +  +T  +L +AL++YLP LLGL       +L+D ++F W +  D  +E+   +  YE+L
Sbjct: 53  NNDTTCENLLEALKEYLPYLLGLEKKLPFQKLRDNVEFTWTDSFDTKKESAT-SLRYELL 111

Query: 141 SVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQ 200
           S+L  +  L+   AN  L+            S E  +++I    KAAGY ++   +VLP 
Sbjct: 112 SILFNLAALASQLANEKLITG----------SEEDLKQAIKSLQKAAGYFEYLKEHVLPL 161

Query: 201 LPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWH 260
            P E    LP+DLTE VL A  +  L Q  +  L  A +   A +++  R ACE  KY+ 
Sbjct: 162 PPDE----LPVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLARLACEAAKYYE 217

Query: 261 EAQENI--VNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAAL 318
           EA + +  V+L        K  LF++WK    KA AYY HGL LDE    G    A A L
Sbjct: 218 EALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIG---EAIARL 274

Query: 319 RAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKD 361
           +AA E LKES+  C+SF           +WG  K L EKI K+
Sbjct: 275 QAALELLKESERLCKSF--------LLDVWGNLKKLKEKIEKE 309

This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 (in the case of Alix, HD-PTP, and Brox) and Snf7 (in the case of yeast Bro1, and Rim20). The single domain protein human Brox, and the isolated Bro1-like domains of Alix, HD-PTP and Rhophilin can bind human immunodeficiency virus type 1 (HIV-1) nucleocapsid. Alix, HD-PTP, Bro1, and Rim20 also have a V-shaped (V) domain, which in the case of Alix, has been shown to be a dimerization domain and to contain a binding site for the retroviral late assembly (L) domain YPXnL motif, which is partially conserved in this superfamily. Alix, HD-PTP and Bro1 also have a proline-rich region (PRR); the Alix PRR binds multiple partners. Rhophilin-1, and -2, in addition to this Bro1-like domain, have an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. HD-PTP is encoded by the PTPN23 gene, a tumor suppressor gene candidate frequently absent in human kidney, breast, lung, and cervical tumors. This protein has a C-terminal, catalytically inactive tyrosine phosphatase domain. Length = 345
>gnl|CDD|217365 pfam03097, BRO1, BRO1-like domain Back     alignment and domain information
>gnl|CDD|214990 smart01041, BRO1, BRO1-like domain Back     alignment and domain information
>gnl|CDD|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 409
cd09243353 BRO1_Brox_like Protein-interacting Bro1-like domai 100.0
cd09246353 BRO1_Alix_like_1 Protein-interacting, N-terminal, 100.0
cd09241355 BRO1_ScRim20-like Protein-interacting, N-terminal, 100.0
cd09242348 BRO1_ScBro1_like Protein-interacting, N-terminal, 100.0
cd09240346 BRO1_Alix Protein-interacting, N-terminal, Bro1-li 100.0
cd09239361 BRO1_HD-PTP_like Protein-interacting, N-terminal, 100.0
cd09034345 BRO1_Alix_like Protein-interacting Bro1-like domai 100.0
cd09244350 BRO1_Rhophilin Protein-interacting Bro1-like domai 100.0
cd09245413 BRO1_UmRIM23-like Protein-interacting, Bro1-like d 100.0
PF03097377 BRO1: BRO1-like domain; InterPro: IPR004328 The BR 100.0
cd09247346 BRO1_Alix_like_2 Protein-interacting Bro1-like dom 100.0
cd09248384 BRO1_Rhophilin_1 Protein-interacting Bro1-like dom 100.0
cd09249385 BRO1_Rhophilin_2 Protein-interacting Bro1-like dom 100.0
KOG2220 714 consensus Predicted signal transduction protein [G 100.0
KOG2220 714 consensus Predicted signal transduction protein [G 95.96
cd0268275 MIT_AAA_Arch MIT: domain contained within Microtub 81.34
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins Back     alignment and domain information 
Probab=100.00  E-value=6.7e-72  Score=562.28  Aligned_cols=335  Identities=19%  Similarity=0.297  Sum_probs=291.2

Q ss_pred             CCCCCCCCCc--hHHHhHhhHHHHHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHHHHHHHHHHhhhh-
Q 046615           31 LRIPKPVDFA--EPIGDELSRRLVERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQALEDYLPILLGLVE-  107 (409)
Q Consensus        31 lr~~~~vdl~--~~L~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al~~Yl~~L~gl~~-  107 (409)
                      ||-+.+|+|.  .-.++-=.++++++|+.-|++++.+.              ++. +.+..+|++++++|||+|+||+. 
T Consensus         7 ~k~t~~~~f~~~~~~~~~~~~~~~~~~~~~r~~l~~~~--------------~~~-~~~~~~~~~a~~~Yl~ll~g~~~~   71 (353)
T cd09243           7 LKATAPVKFDLKGVATTPAASKLCSDLRTARARLLELL--------------SDP-SNDVDTVKTAFNAYLSLLQGFILA   71 (353)
T ss_pred             cccccccccccccccCChhHHHHHHHHHHHHHHHHHHh--------------cCC-CCCHHHHHHHHHHHHHHHHHHhhc
Confidence            7777777772  22223334578999999999999999              555 88899999999999999999996 


Q ss_pred             -----cCcCCCCccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHH
Q 046615          108 -----NGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDM  182 (409)
Q Consensus       108 -----k~~~l~~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~  182 (409)
                           ++++++..|.|+|+|+|++..+++++|++||++|||||||+||+++|+.+ ...      ++ .++|++|+||++
T Consensus        72 ~d~~~~~~~l~~~v~F~W~dsl~~~~~~~q~sl~fEk~sVLfNigal~s~~As~~-~~~------~~-~s~e~~K~A~~~  143 (353)
T cd09243          72 LDGKTQESKLRYLINFKWTDSLLGNEPSVQQDAIFELASMLFNVALWYTKHASKL-AGK------ED-ITEDEAKDVHKS  143 (353)
T ss_pred             ccccCCccccceeeeEEEECCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHH-hcc------CC-CCcHHHHHHHHH
Confidence                 67999999999999999766899999999999999999999999999544 322      22 456899999999


Q ss_pred             HHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 046615          183 FLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEA  262 (409)
Q Consensus       183 f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA~e~s~~Y~~A  262 (409)
                      ||+|||||+||+++++|.+++.  ..+|+||+++++++|+.|||||||||||+|||++++ +++||||||+|+++||++|
T Consensus       144 fq~AAG~F~~l~e~~l~~l~~~--~~p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~k~-k~sliaKLA~q~a~~Y~~A  220 (353)
T cd09243         144 LRTAAGIFQFVKENYIPKLIEP--AEKGSDLDPRVLEAYINQCTAEAQEVTVARAIELKH-NAGLISALAYETAKLFQKA  220 (353)
T ss_pred             HHHHHHHHHHHHHhhccccccc--CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHH
Confidence            9999999999999999977543  346789999999999999999999999999999854 5569999999999999999


Q ss_pred             HHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-
Q 046615          263 QENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPL-  341 (409)
Q Consensus       263 ~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~-  341 (409)
                      .+.+++.+  ..|.++|+.|+++|+++|+|+||||+|+++++   +++||||||||+.|+++++++++.|++|..+.+. 
T Consensus       221 ~~~l~~~~--~~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e---~~k~GeaIa~L~~A~~~~k~a~~~~k~y~~~~~~~  295 (353)
T cd09243         221 DDSLSSLD--PEYSGKWRKYLQLKSVFYLAYAYCYHGETLLA---KDKCGEAIRSLQESEKLYNKAEALCKEYAKTKGPG  295 (353)
T ss_pred             HHHHHcCC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHhHh---cchHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Confidence            99998743  35778899999999999999999999999999   8999999999999999999999999999876432 


Q ss_pred             -CCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCCCCCCCCcccc--ccCcccc
Q 046615          342 -SRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQTAPALPDFQL--SLKPEDF  397 (409)
Q Consensus       342 -~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~~~p~Lp~~~l--~~~p~~~  397 (409)
                       ...|..+.+++.+.+.|++.|++++||||+|| |++||+++|.++..+.  +++|+||
T Consensus       296 ~~~~~~~~~~~~~l~~~I~~~L~~aeKDNdfIY-h~~VP~e~p~~e~k~~~g~~~~~~~  353 (353)
T cd09243         296 TTAKPDQHLFFRKLGPLVKRTLEKCERENGFIY-HQKVPDEVPQLELKATYGLVSPEEF  353 (353)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHhhhhceec-cccCCCCCCccccccccCccCCCCC
Confidence             33355567899999999999999999999555 9999999999997663  5999987

This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily Back     alignment and domain information
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins Back     alignment and domain information
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins Back     alignment and domain information
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains Back     alignment and domain information
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains Back     alignment and domain information
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains Back     alignment and domain information
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains Back     alignment and domain information
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains Back     alignment and domain information
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome Back     alignment and domain information
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily Back     alignment and domain information
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1 Back     alignment and domain information
>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2 Back     alignment and domain information
>KOG2220 consensus Predicted signal transduction protein [General function prediction only] Back     alignment and domain information
>KOG2220 consensus Predicted signal transduction protein [General function prediction only] Back     alignment and domain information
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
3r9m_A376 BRO1 domain-containing protein BROX; protein bindi 6e-53
3c3r_A380 Programmed cell death 6-interacting protein; ALIX 4e-32
3rau_A363 Tyrosine-protein phosphatase non-receptor type 23; 1e-28
1zb1_A392 BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking 5e-26
2xs1_A 704 Programmed cell death 6-interacting protein; prote 3e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A Length = 376 Back     alignment and structure
 Score =  179 bits (456), Expect = 6e-53
 Identities = 65/391 (16%), Positives = 134/391 (34%), Gaps = 44/391 (11%)

Query: 31  LRIPKPVDFA--EPIGDELSRRLVERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTL 88
           L+   PV F     +    + ++   L + R R++ +                       
Sbjct: 12  LKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELF---------------TDLSCNP 56

Query: 89  ADLQQALEDYLPILLGLV------ENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSV 142
             ++ A + Y  +L G +         ++L+    F W +       +   ++ +E++S+
Sbjct: 57  EMMKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISM 116

Query: 143 LQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLP 202
              + +     A+ L          +  ++ +  +E       AAG       + LP+L 
Sbjct: 117 GFNVALWYTKYASRLAG--------KENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLI 168

Query: 203 PEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEA 262
               K    DL   ++ A+ +Q   +  +V +  AI+       +    A E   ++ +A
Sbjct: 169 TPAEK--GRDLESRLIEAYVIQCQAEAQEVTIARAIEL-KHAPGLIAALAYETANFYQKA 225

Query: 263 QENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAAD 322
              + +  L   +  K R ++  K     A AY  HG  L      G    A  +L+ A+
Sbjct: 226 DHTLSS--LEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCG---EAIRSLQEAE 280

Query: 323 EFLKESKMTCESFHMT--PPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQ 380
           +   +++  C+ +  T  P  +  P      + L   +   +      N G   ++ I  
Sbjct: 281 KLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQREN-GFIYFQKIPT 339

Query: 381 TAPALPDFQLS--LKPEDFILPSVDSSWKEN 409
            AP L        ++P  F  P     W   
Sbjct: 340 EAPQLELKANYGLVEPIPFEFPPTSVQWTPE 370
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A Length = 380 Back     alignment and structure
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens} Length = 363 Back     alignment and structure
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae} Length = 392 Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query409
3r9m_A376 BRO1 domain-containing protein BROX; protein bindi 100.0
3c3r_A380 Programmed cell death 6-interacting protein; ALIX 100.0
3rau_A363 Tyrosine-protein phosphatase non-receptor type 23; 100.0
2xs1_A 704 Programmed cell death 6-interacting protein; prote 100.0
1zb1_A392 BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking 100.0
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A Back     alignment and structure
Probab=100.00  E-value=2.7e-71  Score=562.04  Aligned_cols=346  Identities=19%  Similarity=0.300  Sum_probs=302.5

Q ss_pred             CCCCCCCCCCCchHH--HhHhhHHHHHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHHHHHHHHHHhhh
Q 046615           29 PGLRIPKPVDFAEPI--GDELSRRLVERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQALEDYLPILLGLV  106 (409)
Q Consensus        29 P~lr~~~~vdl~~~L--~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al~~Yl~~L~gl~  106 (409)
                      | ||.|..|+|..-+  ++..+.+.+++++.+|++++++.              .++ +.+...+++++++||++|++|.
T Consensus        11 ~-lk~T~~v~F~~~~~~~~~~~~~~~~~l~~~R~~l~~~~--------------~~~-~~~~~~~~~~l~~Yl~~L~~l~   74 (376)
T 3r9m_A           11 P-LKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELF--------------TDL-SCNPEMMKNAADSYFSLLQGFI   74 (376)
T ss_dssp             C-CCCBCCCCCCCGGGBCSHHHHHHHHHHHHHHHHHHHHT--------------TCT-TCCHHHHHHHHHHHHHHHGGGT
T ss_pred             C-CCCCceeeeeeeeecCCchHHHHHHHHHHHHHHHHHHH--------------hcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            6 8999999987543  24456678999999999999988              666 5567888999999999999998


Q ss_pred             hc------CcCCCCccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHH
Q 046615          107 EN------GNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESI  180 (409)
Q Consensus       107 ~k------~~~l~~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~  180 (409)
                      ..      +..++..|.|+|+|+|++..+++++|++||++|||||||++|+++|+....        ..+.++|++|.|+
T Consensus        75 ~~~~~~~~~~~l~~~i~F~W~dsl~~~~~~~~~sl~fE~a~VLfNiaal~sq~A~~~~~--------~~r~~~e~lK~A~  146 (376)
T 3r9m_A           75 NSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAG--------KENITEDEAKEVH  146 (376)
T ss_dssp             BCSSCTTCBCTTTTSCCEEECCTTSTTCCEEESCHHHHHHHHHHHHHHHHHHHHHHHHT--------CTTCCHHHHHHHH
T ss_pred             hccccCCccccccccceeEeeCCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHhhc--------cccCChHHHHHHH
Confidence            63      245667899999999987789999999999999999999999999954421        2347888999999


Q ss_pred             HHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 046615          181 DMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWH  260 (409)
Q Consensus       181 ~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA~e~s~~Y~  260 (409)
                      ++||+|||||+||+++++|.+.+  ...+|+||++++|++|+.+||||||||+|+|||.++++. +||||||+|++++|+
T Consensus       147 ~~fq~AAG~f~~l~~~~~~~~~~--~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~k~-~liAKLa~q~~~~Y~  223 (376)
T 3r9m_A          147 RSLKIAAGIFKHLKESHLPKLIT--PAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQ  223 (376)
T ss_dssp             HHHHHHHHHHHHHHHHTGGGCSS--CCCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcccC--CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHH
Confidence            99999999999999999987632  134678999999999999999999999999999985554 599999999999999


Q ss_pred             HHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 046615          261 EAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPP  340 (409)
Q Consensus       261 ~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~  340 (409)
                      +|.+.++..  ......+|+.|++.|..+|.|+||||+|+++++   +++|||+||||+.|+++++++.+.|++|+.+.|
T Consensus       224 ~a~~~l~~~--~~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~~  298 (376)
T 3r9m_A          224 KADHTLSSL--EPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLA---SDKCGEAIRSLQEAEKLYAKAEALCKEYGETKG  298 (376)
T ss_dssp             HHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHhc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            999999864  346678899999999999999999999999999   899999999999999999999999999987654


Q ss_pred             --CCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCCCCCCC---CccccccCccccCCCCCCCCCcC
Q 046615          341 --LSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQTAPAL---PDFQLSLKPEDFILPSVDSSWKE  408 (409)
Q Consensus       341 --~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~~~p~L---p~~~l~~~p~~~~lP~~~~~W~~  408 (409)
                        .+..|....+++.+.+.|++.+++++||||+|| ||+||+++|.+   |.+++ |+|+||++|++||.|++
T Consensus       299 ~~~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY-~~~VP~~~p~~~~k~~~~l-vk~~~~~~p~~~~~w~~  369 (376)
T 3r9m_A          299 PGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY-FQKIPTEAPQLELKANYGL-VEPIPFEFPPTSVQWTP  369 (376)
T ss_dssp             SSCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCSSCCCCCCCCSSCC-CCCCCCCCCCCCTTCCH
T ss_pred             CccccccchhhHHHHHHHHHHHHHHHHHhhcccee-cccCCCCCCCcccccccce-ecCcCCCCCCCChhhhH
Confidence              344555556789999999999999999999666 78999999998   55677 99999999999999985
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A Back     alignment and structure
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens} Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Back     alignment and structure
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00