Citrus Sinensis ID: 046631
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 813 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LIE7 | 820 | Pentatricopeptide repeat- | yes | no | 0.933 | 0.925 | 0.632 | 0.0 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.929 | 0.849 | 0.321 | 1e-122 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.870 | 0.737 | 0.313 | 1e-113 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.809 | 0.755 | 0.334 | 1e-112 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.861 | 0.816 | 0.325 | 1e-111 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.819 | 0.783 | 0.329 | 1e-110 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.799 | 0.764 | 0.322 | 1e-108 | |
| Q9SS97 | 660 | Putative pentatricopeptid | no | no | 0.742 | 0.915 | 0.325 | 1e-108 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.856 | 0.789 | 0.323 | 1e-105 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.742 | 0.762 | 0.349 | 1e-105 |
| >sp|Q9LIE7|PP246_ARATH Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/791 (63%), Positives = 633/791 (80%), Gaps = 32/791 (4%)
Query: 23 QLPQIHSLSPPIPKLKTPTIRSRLSKICQEGRPHLARQLFDSITRPTTVIWNTIIIGFVC 82
Q + SPP +TP+IRSRLSKICQ+G P LARQLFD+I +PTTV+WNTIIIGF+C
Sbjct: 23 QTRHSSTFSPPTLTPQTPSIRSRLSKICQDGNPQLARQLFDAIPKPTTVLWNTIIIGFIC 82
Query: 83 NNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSR 142
NNLP+EA+L YS+MKK++P+T+CD YTYSS LKACAET+NL+ GKAVHCH IRC N SR
Sbjct: 83 NNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSR 142
Query: 143 FVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYV 202
V+NSL+NMY +CL++ D +YD+V KVFD MRR+NVVAWNT++SWYV
Sbjct: 143 VVHNSLMNMYVSCLNAPDC------------FEYDVVRKVFDNMRRKNVVAWNTLISWYV 190
Query: 203 KTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVND 262
KT R EA RQF +M+RM ++PS +SFVNVFPA+S K A+V YGL++KLG EYV D
Sbjct: 191 KTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKD 250
Query: 263 LFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLE 322
LFV SSAI MYAELG + +R++FD+C+ERN EVWNTMIG YVQN+ VE+IELF++ +
Sbjct: 251 LFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIG 310
Query: 323 LDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVI---------- 372
EIV D+VT+L A SAVS LQ+++LG+Q H ++ KNF LP++++N+++
Sbjct: 311 SKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVH 370
Query: 373 ----------ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAAS 422
ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF ID +TVTALLSAAS
Sbjct: 371 KSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAAS 430
Query: 423 NLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWN 482
NLRN+++GKQTHA+L+R GI FEGM SYLIDMY+KSGLI+ ++++FE + +RDQATWN
Sbjct: 431 NLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWN 490
Query: 483 AMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY 542
+MI+GYTQNG E+ F+ FR+MLE N+ PN VT+AS+LPAC+ +G+++LGKQLHGFSIR
Sbjct: 491 SMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQ 550
Query: 543 LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLF 602
LDQNVFV ++L+DMYSK+G I YA ++F++ E+NSVTYTTMILGYGQHGM ERA+SLF
Sbjct: 551 YLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLF 610
Query: 603 RSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR 662
SM+ GI+PDAITFVAVLSACSY+GL+DEGL+IF+ M++ Y IQPS+EHYCC+ DMLGR
Sbjct: 611 LSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGR 670
Query: 663 VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722
VG+V EAYEFVK LGEEGN+ E+WGSLLGSC+LHG ELAE V+++L + D + GY
Sbjct: 671 VGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYE 730
Query: 723 VLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIY 782
VLLSN+YAEE W++VDKVR+ MRE+GL+KEVG S I++ GYVN F S+DQEHP S +IY
Sbjct: 731 VLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIY 790
Query: 783 EMLERLAMEMR 793
++++ LA +MR
Sbjct: 791 DVIDGLAKDMR 801
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 268/833 (32%), Positives = 446/833 (53%), Gaps = 77/833 (9%)
Query: 5 SVPLPLPPPPPTATPPPPQLPQIHSLSPPIPKLKTPTIRSRLSKICQEGRPHLARQLFDS 64
S PL P+ P P QL P TPT + G P +F S
Sbjct: 2 SCPLAFTFSLPSIFPFPSQLLPFSRHKHPYLLRATPTSATEDVASAVSGAP----SIFIS 57
Query: 65 ITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLR 124
+R + W ++ V +NL EA+L Y M DNY + ++LKA A+ +++
Sbjct: 58 QSR-SPEWWIDLLRSKVRSNLLREAVLTYVDMIVLG--IKPDNYAFPALLKAVADLQDME 114
Query: 125 IGKAVHCHFIR-CFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVF 183
+GK +H H + + S V N+L+N+Y C + V KVF
Sbjct: 115 LGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC------------------GDFGAVYKVF 156
Query: 184 DTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSL---- 239
D + RN V+WN+++S E++ A+ FR ML + PS+ + V+V A S+L
Sbjct: 157 DRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPE 216
Query: 240 GDYKSADV-VYGLLV-KLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVW 297
G V YGL +L S F+ ++ + MY +LG ++ + + R+ W
Sbjct: 217 GLMMGKQVHAYGLRKGELNS------FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTW 270
Query: 298 NTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYII 357
NT++ QN +EA+E +++ + L+ + D+ T S L A S L+ L G++LHAY +
Sbjct: 271 NTVLSSLCQNEQLLEALE-YLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYAL 329
Query: 358 KN-------FVALPVI--------------VLNAVIERDVVSWNTMISAFVQNGLDDEGL 396
KN FV ++ V + + +R + WN MI+ + QN D E L
Sbjct: 330 KNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEAL 389
Query: 397 MLVYEMQKQ-GFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEG-MESYLIDM 454
+L M++ G + +S T+ ++ A + H ++++ G+ + +++ L+DM
Sbjct: 390 LLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDM 449
Query: 455 YAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQM--LEHNVT-- 510
Y++ G I A +IF K + DRD TWN MI GY + E+A + +M LE V+
Sbjct: 450 YSRLGKIDIAMRIFGKME--DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKG 507
Query: 511 -------PNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGV 563
PN +T+ ++LP+C + + GK++H ++I+ L +V VG++L+DMY+K G
Sbjct: 508 ASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGC 567
Query: 564 INYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA 623
+ + VF +IP+KN +T+ +I+ YG HG + A+ L R M G++P+ +TF++V +A
Sbjct: 568 LQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAA 627
Query: 624 CSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVL 683
CS++G+VDEGL+IF +M+ +Y ++PS++HY CV D+LGR G++ EAY+ + + + N
Sbjct: 628 CSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKA 687
Query: 684 EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRK 743
W SLLG+ R+H + E+ E+ A+ L++++ ++ ++VLL+NIY+ G W+ +VR+
Sbjct: 688 GAWSSLLGASRIHNNLEIGEIAAQNLIQLEP--NVASHYVLLANIYSSAGLWDKATEVRR 745
Query: 744 EMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAG 796
M+E+G+RKE GCSWI+ G V++F + D HPQS K+ LE L MR G
Sbjct: 746 NMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEG 798
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 237/756 (31%), Positives = 412/756 (54%), Gaps = 48/756 (6%)
Query: 58 ARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKAC 117
A ++FD + T WNT+I +V N P A+ LY M+ ++ ++LKAC
Sbjct: 135 AEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLS--SFPALLKAC 192
Query: 118 AETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYD 177
A+ R++R G +H ++ + + F+ N+L++MY+ K ++ ++
Sbjct: 193 AKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYA-------------KNDDLSAAR-- 237
Query: 178 LVCKVFDTMRRR-NVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPAL 236
++FD + + + V WN+I+S Y + + +E + FR M G P++ + V+ A
Sbjct: 238 ---RLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTAC 294
Query: 237 SSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEV 296
K ++ ++K S + ++L+V ++ I MY G A +I +
Sbjct: 295 DGFSYAKLGKEIHASVLK-SSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVT 353
Query: 297 WNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYI 356
WN++I GYVQN EA+E F ++ D+V+ S ++A +L L G +LHAY+
Sbjct: 354 WNSLIKGYVQNLMYKEALEFFSDMIAAGHKS-DEVSMTSIIAASGRLSNLLAGMELHAYV 412
Query: 357 IKNFVALPVIVLNAVIE--------------------RDVVSWNTMISAFVQNGLDDEGL 396
IK+ + V N +I+ +D++SW T+I+ + QN E L
Sbjct: 413 IKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEAL 472
Query: 397 MLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYA 456
L ++ K+ ID + + ++L A+S L++ + K+ H ++LR G+ +++ L+D+Y
Sbjct: 473 ELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYG 532
Query: 457 KSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTI 516
K + A ++FE +D +W +MI+ NG EA FR+M+E ++ + V +
Sbjct: 533 KCRNMGYATRVFESIKG--KDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVAL 590
Query: 517 ASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE 576
+L A + + G+++H + +R + +++DMY+ G + A VF +I
Sbjct: 591 LCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIER 650
Query: 577 KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQI 636
K + YT+MI YG HG + A+ LF M+ + PD I+F+A+L ACS+AGL+DEG
Sbjct: 651 KGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGF 710
Query: 637 FDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLH 696
+M+ EY+++P EHY C+ DMLGR VVEA+EFVK + E E+W +LL +CR H
Sbjct: 711 LKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTA-EVWCALLAACRSH 769
Query: 697 GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGC 756
E+ E+ A++LLE++ +N PG VL+SN++AE+G W +V+KVR +M+ G+ K GC
Sbjct: 770 SEKEIGEIAAQRLLELEPKN--PGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGC 827
Query: 757 SWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEM 792
SWI++ G V++F ++D+ HP+S +IYE L + ++
Sbjct: 828 SWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKL 863
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 241/720 (33%), Positives = 395/720 (54%), Gaps = 62/720 (8%)
Query: 106 DNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLN-----MYSTCLSSLD 160
D T SVL+ CA++++L+ GK V +FIR + FV +S L MY+ C +
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVD-NFIR----GNGFVIDSNLGSKLSLMYTNCGDLKE 147
Query: 161 AEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRM 220
A +VFD ++ + WN +++ K+ + ++ F+ M+
Sbjct: 148 AS------------------RVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSS 189
Query: 221 GIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFD 280
G+ + +F V + SSL + ++G ++K G N V +S + Y + D
Sbjct: 190 GVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNS--VGNSLVAFYLKNQRVD 247
Query: 281 FARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAV 340
ARK+FD ER+ WN++I GYV N + + +FVQ+L + I D T +S +
Sbjct: 248 SARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQML-VSGIEIDLATIVSVFAGC 306
Query: 341 SQLQELDLGQQLHAYIIKNFVALPVIVLNAVI--------------------ERDVVSWN 380
+ + + LG+ +H+ +K + N ++ +R VVS+
Sbjct: 307 ADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYT 366
Query: 381 TMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRH 440
+MI+ + + GL E + L EM+++G D TVTA+L+ + R D GK+ H ++ +
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN 426
Query: 441 GIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFV 499
+ F+ + + L+DMYAK G ++ A +F + +D +WN +I GY++N EA
Sbjct: 427 DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV--KDIISWNTIIGGYSKNCYANEALS 484
Query: 500 AFRQMLEHN-VTPNVVTIASVLPACNPMGNIELGKQLHGFSIR--YLLDQNVFVGTSLID 556
F +LE +P+ T+A VLPAC + + G+++HG+ +R Y D++ V SL+D
Sbjct: 485 LFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRH--VANSLVD 542
Query: 557 MYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAIT 616
MY+K G + A +F I K+ V++T MI GYG HG + A++LF M+ GIE D I+
Sbjct: 543 MYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS 602
Query: 617 FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL 676
FV++L ACS++GLVDEG + F++M+ E KI+P+ EHY C+ DML R G +++AY F++ +
Sbjct: 603 FVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENM 662
Query: 677 GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWE 736
+ IWG+LL CR+H +LAE VA+K+ E++ N+ GY+VL++NIYAE WE
Sbjct: 663 PIPPDAT-IWGALLCGCRIHHDVKLAEKVAEKVFELEPENT--GYYVLMANIYAEAEKWE 719
Query: 737 NVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAG 796
V ++RK + +RGLRK GCSWI++ G VN F + D +P++ I L ++ M G
Sbjct: 720 QVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEG 779
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 247/758 (32%), Positives = 403/758 (53%), Gaps = 58/758 (7%)
Query: 65 ITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLR 124
+ R + WN+II FV N L +A+ Y +M S D T+ ++KAC +N +
Sbjct: 98 LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFG--VSPDVSTFPCLVKACVALKNFK 155
Query: 125 ----IGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVC 180
+ V + C + FV +SL+ Y ++Y K D+
Sbjct: 156 GIDFLSDTVSSLGMDC----NEFVASSLIKAY------------------LEYGKIDVPS 193
Query: 181 KVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLG 240
K+FD + +++ V WN +++ Y K ++ F +M I P+ ++F V +S
Sbjct: 194 KLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKL 253
Query: 241 DYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTM 300
++GL+V G ++ + +S + MY++ G FD A K+F +T WN M
Sbjct: 254 LIDLGVQLHGLVVVSGVDFEGS--IKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCM 311
Query: 301 IGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNF 360
I GYVQ+ E++ F +++ ++ D +TF S L +VS+ + L+ +Q+H YI+++
Sbjct: 312 ISGYVQSGLMEESLTFFYEMIS-SGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHS 370
Query: 361 VALPVIVLNAVIER--------------------DVVSWNTMISAFVQNGLDDEGLMLVY 400
++L + + +A+I+ DVV + MIS ++ NGL + L +
Sbjct: 371 ISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFR 430
Query: 401 EMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSG 459
+ K + +T+ ++L L +G++ H ++++ G + +IDMYAK G
Sbjct: 431 WLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCG 490
Query: 460 LIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASV 519
+ A +IFE+ RD +WN+MI Q+ A FRQM + + V+I++
Sbjct: 491 RMNLAYEIFER--LSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAA 548
Query: 520 LPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNS 579
L AC + + GK +HGF I++ L +V+ ++LIDMY+K G + A NVF + EKN
Sbjct: 549 LSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNI 608
Query: 580 VTYTTMILGYGQHGMSERALSLFRSM-KGCGIEPDAITFVAVLSACSYAGLVDEGLQIFD 638
V++ ++I G HG + +L LF M + GI PD ITF+ ++S+C + G VDEG++ F
Sbjct: 609 VSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFR 668
Query: 639 LMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGH 698
M ++Y IQP EHY CV D+ GR G++ EAYE VK + + +WG+LLG+CRLH +
Sbjct: 669 SMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDA-GVWGTLLGACRLHKN 727
Query: 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSW 758
ELAEV + KL+++D NS GY+VL+SN +A WE+V KVR M+ER ++K G SW
Sbjct: 728 VELAEVASSKLMDLDPSNS--GYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSW 785
Query: 759 IDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAG 796
I++ + F S D HP+S IY +L L E+R G
Sbjct: 786 IEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEG 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 237/719 (32%), Positives = 390/719 (54%), Gaps = 53/719 (7%)
Query: 106 DNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVG 165
D+ T+SS+LK+C R+ R+GK VH I P +YNSL+++YS S AE
Sbjct: 61 DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAE--- 117
Query: 166 LKYVEVDYSKYDLVCKVFDTMRR---RNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGI 222
VF+TMRR R+VV+W+ +++ Y R ++A++ F L +G+
Sbjct: 118 ---------------DVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGL 162
Query: 223 RPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAE-LGCFDF 281
P+ + V A S+ V G L+K G + +D+ V S I M+ + F+
Sbjct: 163 VPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTG-HFESDVCVGCSLIDMFVKGENSFEN 221
Query: 282 ARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVS 341
A K+FD E N W MI +Q P EAI F+ ++ L D T S SA +
Sbjct: 222 AYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMV-LSGFESDKFTLSSVFSACA 280
Query: 342 QLQELDLGQQLHAYIIKNFVALPV---------------------IVLNAVIERDVVSWN 380
+L+ L LG+QLH++ I++ + V V + + + V+SW
Sbjct: 281 ELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWT 340
Query: 381 TMISAFVQN-GLDDEGLMLVYEMQKQGFM-IDSVTVTALLSAASNLRNQDVGKQTHAYLL 438
+I+ +++N L E + L EM QG + + T ++ A NL + VGKQ
Sbjct: 341 ALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAF 400
Query: 439 RHGIHF-EGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEA 497
+ G+ + + +I M+ KS ++ A++ FE +++ ++N + G +N E+A
Sbjct: 401 KRGLASNSSVANSVISMFVKSDRMEDAQRAFES--LSEKNLVSYNTFLDGTCRNLNFEQA 458
Query: 498 FVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDM 557
F ++ E + + T AS+L +G+I G+Q+H ++ L N V +LI M
Sbjct: 459 FKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISM 518
Query: 558 YSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITF 617
YSK G I+ A+ VF + +N +++T+MI G+ +HG + R L F M G++P+ +T+
Sbjct: 519 YSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY 578
Query: 618 VAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELG 677
VA+LSACS+ GLV EG + F+ M +++KI+P EHY C+ D+L R G + +A+EF+ +
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638
Query: 678 EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWEN 737
+ +VL +W + LG+CR+H ++EL ++ A+K+LE+D P ++ LSNIYA G WE
Sbjct: 639 FQADVL-VWRTFLGACRVHSNTELGKLAARKILELDPNE--PAAYIQLSNIYACAGKWEE 695
Query: 738 VDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAG 796
++R++M+ER L KE GCSWI+VG +++F D HP +H+IY+ L+RL E++ G
Sbjct: 696 STEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCG 754
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 238/738 (32%), Positives = 373/738 (50%), Gaps = 88/738 (11%)
Query: 73 WNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCH 132
WN++I + N + + L+ M S +T DNYT+ V KAC E ++R G++ H
Sbjct: 95 WNSLIRSYGDNGCANKCLYLFGLMHSLS-WTP-DNYTFPFVFKACGEISSVRCGESAHAL 152
Query: 133 FIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVV 192
+ + FV N+L+ MYS C S DA KVFD M +VV
Sbjct: 153 SLVTGFISNVFVGNALVAMYSRCRSLSDAR------------------KVFDEMSVWDVV 194
Query: 193 AWNTIVSWYVKTERYVEAVRQF-RMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGL 251
+WN+I+ Y K + A+ F RM G RP I+ VNV P +SLG + ++
Sbjct: 195 SWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCF 254
Query: 252 LVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPV 311
V SE + ++FV + + MYA+ G D A +F N ++ WN M+ GY Q
Sbjct: 255 AVT--SEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFE 312
Query: 312 EAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAV 371
+A+ LF ++QE
Sbjct: 313 DAVRLF-----------------------EKMQE------------------------EK 325
Query: 372 IERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGK 431
I+ DVV+W+ IS + Q GL E L + +M G + VT+ ++LS +++ GK
Sbjct: 326 IKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGK 385
Query: 432 QTHAYLLRHGIHF----EGMESY----LIDMYAKSGLIKTARQIFEKNDSGDRDQATWNA 483
+ H Y +++ I G E+ LIDMYAK + TAR +F+ +RD TW
Sbjct: 386 EIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTV 445
Query: 484 MIAGYTQNGLLEEAFVAFRQMLEHNVT--PNVVTIASVLPACNPMGNIELGKQLHGFSIR 541
MI GY+Q+G +A +M E + PN TI+ L AC + + +GKQ+H +++R
Sbjct: 446 MIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALR 505
Query: 542 YLLDQN---VFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERA 598
QN +FV LIDMY+K G I+ A VF + KN VT+T+++ GYG HG E A
Sbjct: 506 N--QQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEA 563
Query: 599 LSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVAD 658
L +F M+ G + D +T + VL ACS++G++D+G++ F+ M+ + + P EHY C+ D
Sbjct: 564 LGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVD 623
Query: 659 MLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM 718
+LGR G++ A ++E+ E + +W + L CR+HG EL E A+K+ E+ + +
Sbjct: 624 LLGRAGRLNAALRLIEEMPMEPPPV-VWVAFLSCCRIHGKVELGEYAAEKITELASNHD- 681
Query: 719 PGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQS 778
G + LLSN+YA G W++V ++R MR +G++K GCSW++ F D+ HP +
Sbjct: 682 -GSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHA 740
Query: 779 HKIYEMLERLAMEMRNAG 796
+IY++L +++ G
Sbjct: 741 KEIYQVLLDHMQRIKDIG 758
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/639 (32%), Positives = 371/639 (58%), Gaps = 35/639 (5%)
Query: 181 KVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLG 240
++F M +R++ WNT++ + +++ E + F M R +P + A L
Sbjct: 15 QMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELR 74
Query: 241 DYKSADVVYGLL---VKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVW 297
+ ++++G + V LGS DL+V SS I+MY + G A ++FD + + W
Sbjct: 75 EVNYGEMIHGFVKKDVTLGS----DLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTW 130
Query: 298 NTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYII 357
++M+ G+ +N P +A+E F +++ ++ D VT ++ +SA ++L LG+ +H ++I
Sbjct: 131 SSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVI 190
Query: 358 KNFVALPVIVLNAVI--------------------ERDVVSWNTMISAFVQNGLDDEGLM 397
+ + + ++N+++ E+DV+SW+T+I+ +VQNG E L+
Sbjct: 191 RRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALL 250
Query: 398 LVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYA 456
+ +M G + TV +L A + + + G++TH +R G+ E + + L+DMY
Sbjct: 251 VFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYM 310
Query: 457 KSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQML-EHNVTPNVVT 515
K + A +F + +D +W A+I+G+T NG+ + F ML E+N P+ +
Sbjct: 311 KCFSPEEAYAVFSRIPR--KDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAIL 368
Query: 516 IASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP 575
+ VL +C+ +G +E K H + I+Y D N F+G SL+++YS+ G + A+ VF I
Sbjct: 369 MVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIA 428
Query: 576 EKNSVTYTTMILGYGQHGMSERALSLFRSM-KGCGIEPDAITFVAVLSACSYAGLVDEGL 634
K++V +T++I GYG HG +AL F M K ++P+ +TF+++LSACS+AGL+ EGL
Sbjct: 429 LKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGL 488
Query: 635 QIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCR 694
+IF LM +Y++ P+ EHY + D+LGRVG + A E K + +I G+LLG+CR
Sbjct: 489 RIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRM-PFSPTPQILGTLLGACR 547
Query: 695 LHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEV 754
+H + E+AE VAKKL E+++ ++ GY++L+SN+Y +G WENV+K+R +++RG++K +
Sbjct: 548 IHQNGEMAETVAKKLFELESNHA--GYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGL 605
Query: 755 GCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMR 793
S I++ V+RF + D+ HP+ +Y +L+ L + M+
Sbjct: 606 AESLIEIRRKVHRFVADDELHPEKEPVYGLLKELDLHMK 644
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust.
Identities = 241/746 (32%), Positives = 391/746 (52%), Gaps = 50/746 (6%)
Query: 72 IWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHC 131
+WN+II F N L EA+ Y ++++S S D YT+ SV+KACA + +G V+
Sbjct: 73 LWNSIIRAFSKNGLFPEALEFYGKLRESK--VSPDKYTFPSVIKACAGLFDAEMGDLVYE 130
Query: 132 HFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNV 191
+ FV N+L++MYS +GL +VFD M R++
Sbjct: 131 QILDMGFESDLFVGNALVDMYSR---------MGL---------LTRARQVFDEMPVRDL 172
Query: 192 VAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGL 251
V+WN+++S Y Y EA+ + + I P + + +V PA +L K ++G
Sbjct: 173 VSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGF 232
Query: 252 LVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPV 311
+K S + + V + + MY + AR++FD R++ +NTMI GY++
Sbjct: 233 ALK--SGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVE 290
Query: 312 EAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAV 371
E++ +F++ LD+ D +T S L A L++L L + ++ Y++K L V N +
Sbjct: 291 ESVRMFLE--NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNIL 348
Query: 372 IE--------------------RDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDS 411
I+ +D VSWN++IS ++Q+G E + L M D
Sbjct: 349 IDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADH 408
Query: 412 VTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEK 470
+T L+S ++ L + GK H+ ++ GI + + + LIDMYAK G + + +IF
Sbjct: 409 ITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSS 468
Query: 471 NDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIE 530
+GD TWN +I+ + G QM + V P++ T LP C +
Sbjct: 469 MGTGD--TVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKR 526
Query: 531 LGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYG 590
LGK++H +R+ + + +G +LI+MYSK G + ++ VF ++ ++ VT+T MI YG
Sbjct: 527 LGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYG 586
Query: 591 QHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPST 650
+G E+AL F M+ GI PD++ F+A++ ACS++GLVDEGL F+ M+ YKI P
Sbjct: 587 MYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMI 646
Query: 651 EHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLL 710
EHY CV D+L R K+ +A EF++ + + + IW S+L +CR G E AE V+++++
Sbjct: 647 EHYACVVDLLSRSQKISKAEEFIQAMPIKPDA-SIWASVLRACRTSGDMETAERVSRRII 705
Query: 711 EMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFAS 770
E++ + PGY +L SN YA W+ V +RK ++++ + K G SWI+VG V+ F+S
Sbjct: 706 ELNPDD--PGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSS 763
Query: 771 KDQEHPQSHKIYEMLERLAMEMRNAG 796
D PQS IY+ LE L M G
Sbjct: 764 GDDSAPQSEAIYKSLEILYSLMAKEG 789
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 223/638 (34%), Positives = 362/638 (56%), Gaps = 34/638 (5%)
Query: 182 VFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLR-MGIRPSTISFVNVFPALSSLG 240
+F +++R +V +N ++ + E ++ F + + ++P++ ++ A S
Sbjct: 74 IFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFR 133
Query: 241 DYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTM 300
D ++ V++G V G + ++L + S+ + MY + + ARK+FD E++T +WNTM
Sbjct: 134 DDRAGRVIHGQAVVDGCD--SELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTM 191
Query: 301 IGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHA------ 354
I GY +N VE+I++F ++ D T L L AV++LQEL LG Q+H+
Sbjct: 192 ISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTG 251
Query: 355 -----YIIKNFVAL----PVIVLNAVIER-----DVVSWNTMISAFVQNGLDDEGLMLVY 400
Y++ F++L I + + + R D+V++N MI + NG + L L
Sbjct: 252 CYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFK 311
Query: 401 EMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHG-IHFEGMESYLIDMYAKSG 459
E+ G + S T+ +L+ + +L + H Y L+ + + + L +Y+K
Sbjct: 312 ELMLSGARLRSSTLVSLVPVSGHLM---LIYAIHGYCLKSNFLSHASVSTALTTVYSKLN 368
Query: 460 LIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASV 519
I++AR++F ++S ++ +WNAMI+GYTQNGL E+A FR+M + +PN VTI +
Sbjct: 369 EIESARKLF--DESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCI 426
Query: 520 LPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNS 579
L AC +G + LGK +H + +++V T+LI MY+K G I A +F + +KN
Sbjct: 427 LSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNE 486
Query: 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDL 639
VT+ TMI GYG HG + AL++F M GI P +TF+ VL ACS+AGLV EG +IF+
Sbjct: 487 VTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNS 546
Query: 640 MQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLLGSCRLHGH 698
M Y +PS +HY C+ D+LGR G + A +F++ + E G+ +W +LLG+CR+H
Sbjct: 547 MIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGS--SVWETLLGACRIHKD 604
Query: 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSW 758
+ LA V++KL E+D N GYHVLLSNI++ + N+ VR+ ++R L K G +
Sbjct: 605 TNLARTVSEKLFELDPDN--VGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTL 662
Query: 759 IDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAG 796
I++G + F S DQ HPQ +IYE LE+L +MR AG
Sbjct: 663 IEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAG 700
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 813 | ||||||
| 147790104 | 825 | hypothetical protein VITISV_000699 [Viti | 0.928 | 0.915 | 0.687 | 0.0 | |
| 225464746 | 825 | PREDICTED: pentatricopeptide repeat-cont | 0.928 | 0.915 | 0.686 | 0.0 | |
| 449521571 | 817 | PREDICTED: pentatricopeptide repeat-cont | 0.977 | 0.973 | 0.653 | 0.0 | |
| 449456661 | 793 | PREDICTED: pentatricopeptide repeat-cont | 0.937 | 0.960 | 0.665 | 0.0 | |
| 297830924 | 824 | pentatricopeptide repeat-containing prot | 0.931 | 0.918 | 0.644 | 0.0 | |
| 15233292 | 820 | pentatricopeptide repeat-containing prot | 0.933 | 0.925 | 0.632 | 0.0 | |
| 357495605 | 828 | Pentatricopeptide repeat-containing prot | 0.963 | 0.945 | 0.584 | 0.0 | |
| 255559100 | 695 | pentatricopeptide repeat-containing prot | 0.766 | 0.896 | 0.684 | 0.0 | |
| 356499507 | 755 | PREDICTED: pentatricopeptide repeat-cont | 0.867 | 0.933 | 0.543 | 0.0 | |
| 115460348 | 804 | Os04g0602600 [Oryza sativa Japonica Grou | 0.894 | 0.904 | 0.495 | 0.0 |
| >gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1147 bits (2967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/781 (68%), Positives = 646/781 (82%), Gaps = 26/781 (3%)
Query: 42 IRSRLSKICQEGRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSP 101
IRSRLS +C++G PH A LFDSI RPTTV+WNTIIIGF+CNN+P +A+L Y++M+ +SP
Sbjct: 40 IRSRLSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMR-ASP 98
Query: 102 YTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDA 161
D+YT+SS LKACA+ R+L++GKA+HCH +R SR VYNSLLNMYSTCL+ +
Sbjct: 99 SPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLT--EV 156
Query: 162 EMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMG 221
+G Y D++ DLV +VFDTMR+RNVVAWNT++SWYVKTER +EA + FR M+RMG
Sbjct: 157 PYLGTAY---DFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMG 213
Query: 222 IRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDF 281
IRP+ +SFVNVFPA+ + DY +A+V+YGL+VKLGS+YV+D FV SSAIFMYAELGC DF
Sbjct: 214 IRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDF 273
Query: 282 ARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVS 341
AR+IFD CLERNTEVWNTMIGGYVQNN P+EAI+LFVQV+E ++ DDVTFLSAL+A+S
Sbjct: 274 AREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAIS 333
Query: 342 QLQELDLGQQLHAYIIKNFVALPVIVLNAVI--------------------ERDVVSWNT 381
QLQ LDLG+QLHAYI+K+ L V++LNA+I ERDVV+WNT
Sbjct: 334 QLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNT 393
Query: 382 MISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHG 441
M+SAFVQNGLDDEGLMLV+EMQKQGFM+DSVT+TALLS ASNLR+Q++GKQ HAYL+RHG
Sbjct: 394 MVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG 453
Query: 442 IHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAF 501
I FEGM+ YLIDMYAKSGLI TA+Q+FEKN DRD+ATWNAMIAGYTQNGL EE F F
Sbjct: 454 IQFEGMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVF 513
Query: 502 RQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKS 561
R+M+E NV PN VT+AS+LPACNPMG I LGKQ+HGF+IR L+QNVFVGT+L+DMYSKS
Sbjct: 514 RKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKS 573
Query: 562 GVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVL 621
G I YA NVFA+ EKNSVTYTTMIL YGQHGM ERALSLF +M G GI+PD++TFVA+L
Sbjct: 574 GAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAIL 633
Query: 622 SACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGN 681
SACSYAGLVDEGL+IF M++EYKIQPS+EHYCCVADMLGRVG+V EAYEFVK LGEEGN
Sbjct: 634 SACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGN 693
Query: 682 VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKV 741
IWGSLLG+CR+HG EL +VVA KLLEM+ + + GYHVLLSNIYA EGNW+NVD+V
Sbjct: 694 TFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRV 753
Query: 742 RKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAGNKTIQ 801
RKEMR++GL KE GCSW++V G+VN F S+D +HPQ +IY+MLE+LAMEM++AG K
Sbjct: 754 RKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDAGYKPCL 813
Query: 802 N 802
N
Sbjct: 814 N 814
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1144 bits (2958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/781 (68%), Positives = 647/781 (82%), Gaps = 26/781 (3%)
Query: 42 IRSRLSKICQEGRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSP 101
IRSRLS +C++G PH A LFDSI RPTTV+WNTIIIGF+CNN+P +A+L Y++M+ +SP
Sbjct: 40 IRSRLSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMR-ASP 98
Query: 102 YTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDA 161
D+YT+SS LKACA+ R+L++GKA+HCH +R SR VYNSLLNMYSTCL+ +
Sbjct: 99 SPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLT--EV 156
Query: 162 EMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMG 221
+G Y D++ DLV +VFDTMR+RNVVAWNT++SWYVKTER +EA + FR M+RMG
Sbjct: 157 PYLGTAY---DFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMG 213
Query: 222 IRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDF 281
IRP+ +SFVNVFPA+ + DY +A+V+YGL+VKLGS++V+D FV SSAIFMYAELGC DF
Sbjct: 214 IRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDF 273
Query: 282 ARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVS 341
AR+IFD CLERNTEVWNTMIGGYVQNN P+EAI+LFVQV+E ++ V DDVTFLSAL+A+S
Sbjct: 274 AREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAIS 333
Query: 342 QLQELDLGQQLHAYIIKNFVALPVIVLNAVI--------------------ERDVVSWNT 381
QLQ L+LG+QLHAYI+K+ L V++LNA+I ERDVV+WNT
Sbjct: 334 QLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNT 393
Query: 382 MISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHG 441
M+SAFVQNGLDDEGLMLV+ MQKQGFM+DSVT+TALLS ASNLR+Q++GKQ HAYL+RHG
Sbjct: 394 MVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG 453
Query: 442 IHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAF 501
I FEGM+SYLIDMYAKSGLI TA+Q+FEKN DRD+ATWNAMIAGYTQNGL EE F F
Sbjct: 454 IQFEGMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVF 513
Query: 502 RQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKS 561
R+M+E NV PN VT+AS+LPACNPMG I LGKQ+HGF+IR L++NVFVGT+L+DMYSKS
Sbjct: 514 RKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKS 573
Query: 562 GVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVL 621
G I YA NVFA+ EKNSVTYTTMI YGQHGM ERALSLF +M G GI+PD++TFVA+L
Sbjct: 574 GAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAIL 633
Query: 622 SACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGN 681
SACSYAGLVDEGL+IF M++EYKIQPS EHYCCVADMLGRVG+VVEAYEFVK LGEEGN
Sbjct: 634 SACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGN 693
Query: 682 VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKV 741
IWGSLLG+CR+HG EL +VVA KLLEM+ +S+ GYHVLLSNIYA EGNW+NVD+V
Sbjct: 694 TFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRV 753
Query: 742 RKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAGNKTIQ 801
RKEMR++GL KE GCSW++V G+VN F S+D +HPQ +IY+MLE+LAMEM++AG K
Sbjct: 754 RKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDAGYKPCL 813
Query: 802 N 802
N
Sbjct: 814 N 814
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1135 bits (2936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/835 (65%), Positives = 657/835 (78%), Gaps = 40/835 (4%)
Query: 1 MASSSVPLPLPPPPPTATPPPPQLP-QIHSLSPPIPKLKTPTIRSRLSKICQEGRPHLAR 59
MASS+ PLPL + P LP HS +P K PTIR RLS++CQEG+ HLAR
Sbjct: 1 MASSATPLPL-------SQSPSHLPLHTHSTNP-----KIPTIRYRLSRLCQEGQLHLAR 48
Query: 60 QLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAE 119
QLFD++ RP+TV+WNTIIIG VCNN P EA+L YS MK SSP CD+YTYSSVLKACA+
Sbjct: 49 QLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACAD 108
Query: 120 TRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSL-DAEMVGLKYVEVDYSKYDL 178
TRNL +GKAVH HF+RC NPSR VYNSLLNMYS C S+ D +MV YS+ DL
Sbjct: 109 TRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVS------GYSRCDL 162
Query: 179 VCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSS 238
V KVFDTMR+R VVAWNT+++WYV+TERY EAV+QF MM+++GI+PS +SFVNVFPA SS
Sbjct: 163 VRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSS 222
Query: 239 LGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWN 298
LGD+K+A+VV+G+LVKLGSEYVNDL+V SSAIFMYAELGC +FA+K+FDNCLERNTEVWN
Sbjct: 223 LGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWN 282
Query: 299 TMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK 358
TMI +VQNN +E I+LF Q +E ++ D+VT LSA+SA S LQ+ +L +QLHA++IK
Sbjct: 283 TMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIK 342
Query: 359 NFVALPVIVLNAVI--------------------ERDVVSWNTMISAFVQNGLDDEGLML 398
N V V+NA+I E+DVVSWNTMISAFVQNGL+DE LML
Sbjct: 343 NVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALML 402
Query: 399 VYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKS 458
YEM+KQ M+DSVTVTALLSAAS+LRN D+GKQTH YLLR+GI FEGM+SYLIDMYAKS
Sbjct: 403 FYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAKS 462
Query: 459 GLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIAS 518
GLI+ A+ +FEK+ S +RDQATWN+M++GYTQNGL+++AF+ RQML+ V PNVVT+AS
Sbjct: 463 GLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLAS 522
Query: 519 VLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKN 578
+LPACNP G I+ GKQLHGFSIR LDQNVFV T+LIDMYSKSG I +A NVF+K EK+
Sbjct: 523 ILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKS 582
Query: 579 SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFD 638
VTY+TMILGYGQHGM E AL +F M+ GI+PDA+T VAVLSACSYAGLVDEGLQIF+
Sbjct: 583 IVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFE 642
Query: 639 LMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGH 698
M+ Y IQPSTEH+CCVADMLGR G+V +AYEFV LGE+GNV+EIWGSLL +CR+H
Sbjct: 643 SMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQ 702
Query: 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSW 758
EL ++VAKKLLEM+ N GYHVLLSNIYAEE NWENVD VRK+MRERGL+KE G SW
Sbjct: 703 FELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSW 762
Query: 759 IDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAGNKTIQNSNVDATPRFDE 813
I++ GY+N FASKD++HPQS +IY MLE L MEM++AG + + S + DE
Sbjct: 763 IEIAGYMNHFASKDRKHPQSDQIYSMLEELLMEMKHAGYRPLSTSYLGGFLEPDE 817
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1107 bits (2863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/789 (66%), Positives = 633/789 (80%), Gaps = 27/789 (3%)
Query: 46 LSKICQEGRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSC 105
L ++CQEG+ HLARQLFD++ RP+TV+WNTIIIG VCNN P EA+L YS MK SSP C
Sbjct: 11 LCRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKC 70
Query: 106 DNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSL-DAEMV 164
D+YTYSSVLKACA+TRNL +GKAVH HF+RC NPSR VYNSLLNMYS C S+ D +MV
Sbjct: 71 DSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMV 130
Query: 165 GLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRP 224
YS+ DLV KVFDTMR+R VVAWNT+++WYV+TERY EAV+QF MM+++GI+P
Sbjct: 131 S------GYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKP 184
Query: 225 STISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARK 284
S +SFVNVFPA SSLGD+K+A+VV+G+LVKLGSEYVNDL+V SSAIFMYAELGC +FA+K
Sbjct: 185 SPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKK 244
Query: 285 IFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQ 344
+FDNCLERNTEVWNTMI +VQNN +E I+LF Q +E ++ D+VT LSA+SA S LQ
Sbjct: 245 VFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQ 304
Query: 345 ELDLGQQLHAYIIKNFVALPVIVLNAVI--------------------ERDVVSWNTMIS 384
+ +L +QLHA++IKN V V+NA+I E+DVVSWNTMIS
Sbjct: 305 KFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMIS 364
Query: 385 AFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHF 444
AFVQNGL+DE LML YEM+KQ M+DSVTVTALLSAAS+LRN D+GKQTH YLLR+GI F
Sbjct: 365 AFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQF 424
Query: 445 EGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQM 504
EGM+SYLIDMYAKSGLI+ A+ +FEK+ S +RDQATWN+M++GYTQNGL+++AF+ RQM
Sbjct: 425 EGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQM 484
Query: 505 LEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVI 564
L+ V PNVVT+AS+LPACNP G I+ GKQLHGFSIR LDQNVFV T+LIDMYSKSG I
Sbjct: 485 LDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSI 544
Query: 565 NYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC 624
+A NVF+K EK+ VTY+TMILGYGQHGM E AL +F M+ GI+PDA+T VAVLSAC
Sbjct: 545 AHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSAC 604
Query: 625 SYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLE 684
SYAGLVDEGLQIF+ M+ Y IQPSTEH+CCVADMLGR G+V +AYEFV LGE+GNV+E
Sbjct: 605 SYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVME 664
Query: 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKE 744
IWGSLL +CR+H EL ++VAKKLLEM+ N GYHVLLSNIYAEE NWENVD VRK+
Sbjct: 665 IWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQ 724
Query: 745 MRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAGNKTIQNSN 804
MRERGL+KE G SWI++ GY+N FASKD++HPQS +IY MLE L MEM++AG + + S
Sbjct: 725 MRERGLKKETGSSWIEIAGYMNHFASKDRKHPQSDQIYSMLEELLMEMKHAGYRPLSTSY 784
Query: 805 VDATPRFDE 813
+ DE
Sbjct: 785 LGGFLEPDE 793
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1083 bits (2801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/785 (64%), Positives = 633/785 (80%), Gaps = 28/785 (3%)
Query: 29 SLSPPIPKLKTPTIRSRLSKICQEGRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYE 88
+ SPP +TP+IRSRLSKICQEG P LARQLFD+I +PTTV+WNTIIIGF+CNNLP+E
Sbjct: 29 TFSPPTLTPQTPSIRSRLSKICQEGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHE 88
Query: 89 AILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSL 148
A+L YS+MKK++P+T CD YTYSS LKACAET+NL+ GKAVHCH IRC N SR V+NSL
Sbjct: 89 ALLFYSRMKKTAPFTKCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSL 148
Query: 149 LNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYV 208
+NMY +CL++ +E+ D +YD+V KVFD MRR+NVVAWNT++SWYVKT R
Sbjct: 149 MNMYVSCLNAPGSEL--------DCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNA 200
Query: 209 EAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASS 268
EA RQF +M+RM I+PS +SFVNVFPA+++ K A+V YGL++KLG EYV DLFV SS
Sbjct: 201 EACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVSS 260
Query: 269 AIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVF 328
AI MYAELG + +R++FD+C+ERN EVWNTMIG YVQN+ VE+IELF++ + EIV
Sbjct: 261 AISMYAELGDLESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVS 320
Query: 329 DDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVI---------------- 372
D+VTFL A SAVS LQ+++LG+Q H ++ KNF LP++++N+++
Sbjct: 321 DEVTFLLAASAVSGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVF 380
Query: 373 ----ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQD 428
ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF ID +TVTALLSAASNLRN++
Sbjct: 381 HSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKE 440
Query: 429 VGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGY 488
+GKQTH +L+R GI FEGM SYLIDMYAKSGLI+ ++++FE + +RDQATWN+MI+GY
Sbjct: 441 IGKQTHGFLIRQGIQFEGMNSYLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGY 500
Query: 489 TQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNV 548
TQNG EE F+ FR+MLE N+ PN VT+AS+LPAC+ +G+++LGKQLHGFSIR LDQNV
Sbjct: 501 TQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNV 560
Query: 549 FVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGC 608
FV ++L+DMYSK+G I YA N+F++ E+NSVTYTTMILGYGQHGM ERA+SLF SM+
Sbjct: 561 FVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQEL 620
Query: 609 GIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVE 668
GI+PDAI FVAVLSACSY+GLVDEGL+IF+ M++ Y IQPS+EHYCC+ DMLGRVG+V E
Sbjct: 621 GIKPDAIAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHYCCITDMLGRVGRVNE 680
Query: 669 AYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728
AYEFVK LGEEGN+ E+WGSLLGSCRLHG ELAE V+++L ++D + GY VLLSN+
Sbjct: 681 AYEFVKGLGEEGNIAELWGSLLGSCRLHGELELAETVSERLAKLDKGKNFSGYEVLLSNM 740
Query: 729 YAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERL 788
YAEE NW++VD+VRK MRE+GL+KEVG S I+V G+VN F S+DQEHP S +IY+ ++ L
Sbjct: 741 YAEEQNWKSVDRVRKGMREKGLKKEVGRSGIEVAGHVNCFVSRDQEHPHSGEIYDAIDGL 800
Query: 789 AMEMR 793
A MR
Sbjct: 801 AKNMR 805
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22150, chloroplastic; Flags: Precursor gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana] gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana] gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/791 (63%), Positives = 633/791 (80%), Gaps = 32/791 (4%)
Query: 23 QLPQIHSLSPPIPKLKTPTIRSRLSKICQEGRPHLARQLFDSITRPTTVIWNTIIIGFVC 82
Q + SPP +TP+IRSRLSKICQ+G P LARQLFD+I +PTTV+WNTIIIGF+C
Sbjct: 23 QTRHSSTFSPPTLTPQTPSIRSRLSKICQDGNPQLARQLFDAIPKPTTVLWNTIIIGFIC 82
Query: 83 NNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSR 142
NNLP+EA+L YS+MKK++P+T+CD YTYSS LKACAET+NL+ GKAVHCH IRC N SR
Sbjct: 83 NNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSR 142
Query: 143 FVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYV 202
V+NSL+NMY +CL++ D +YD+V KVFD MRR+NVVAWNT++SWYV
Sbjct: 143 VVHNSLMNMYVSCLNAPDC------------FEYDVVRKVFDNMRRKNVVAWNTLISWYV 190
Query: 203 KTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVND 262
KT R EA RQF +M+RM ++PS +SFVNVFPA+S K A+V YGL++KLG EYV D
Sbjct: 191 KTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKD 250
Query: 263 LFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLE 322
LFV SSAI MYAELG + +R++FD+C+ERN EVWNTMIG YVQN+ VE+IELF++ +
Sbjct: 251 LFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIG 310
Query: 323 LDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVI---------- 372
EIV D+VT+L A SAVS LQ+++LG+Q H ++ KNF LP++++N+++
Sbjct: 311 SKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVH 370
Query: 373 ----------ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAAS 422
ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF ID +TVTALLSAAS
Sbjct: 371 KSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAAS 430
Query: 423 NLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWN 482
NLRN+++GKQTHA+L+R GI FEGM SYLIDMY+KSGLI+ ++++FE + +RDQATWN
Sbjct: 431 NLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWN 490
Query: 483 AMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY 542
+MI+GYTQNG E+ F+ FR+MLE N+ PN VT+AS+LPAC+ +G+++LGKQLHGFSIR
Sbjct: 491 SMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQ 550
Query: 543 LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLF 602
LDQNVFV ++L+DMYSK+G I YA ++F++ E+NSVTYTTMILGYGQHGM ERA+SLF
Sbjct: 551 YLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLF 610
Query: 603 RSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR 662
SM+ GI+PDAITFVAVLSACSY+GL+DEGL+IF+ M++ Y IQPS+EHYCC+ DMLGR
Sbjct: 611 LSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGR 670
Query: 663 VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722
VG+V EAYEFVK LGEEGN+ E+WGSLLGSC+LHG ELAE V+++L + D + GY
Sbjct: 671 VGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYE 730
Query: 723 VLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIY 782
VLLSN+YAEE W++VDKVR+ MRE+GL+KEVG S I++ GYVN F S+DQEHP S +IY
Sbjct: 731 VLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIY 790
Query: 783 EMLERLAMEMR 793
++++ LA +MR
Sbjct: 791 DVIDGLAKDMR 801
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357495605|ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355519426|gb|AET01050.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/837 (58%), Positives = 620/837 (74%), Gaps = 54/837 (6%)
Query: 9 PLPPPPPTATPPPPQLPQIHSLSPPIP--------KLKTPTIRSRLSKICQEGRPHLARQ 60
P+ P P + T PP Q IH+L K + +IRSRLSK+C+EG+PHLA
Sbjct: 14 PIIPLPISTTHPPNQ---IHTLPNQKQKQKQKQWNKAISTSIRSRLSKLCREGQPHLALH 70
Query: 61 LFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAET 120
L DS+ RP+TV+WN++IIGF+CNNLP++A+LLY++M+ +S ++ D YT+SS LKACA T
Sbjct: 71 LLDSLPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTFSSTLKACALT 130
Query: 121 RNLRIGKAVHCHFIRCFSN----PSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKY 176
+++ GKA+H HF+R SN PSR VYNSLLNMY++C ++
Sbjct: 131 KDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASC-------------------QH 171
Query: 177 DLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPAL 236
+ VFD MRRRNVVAWNT++ +VK RY +AV F M+ + PS ++FVN+FPAL
Sbjct: 172 EYALNVFDVMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPAL 231
Query: 237 SSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEV 296
S LGD ++ + YG + K G +YV+D+FV SSAI M++++GC D+AR +FD CL +NTE+
Sbjct: 232 SKLGDSRTVKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEI 291
Query: 297 WNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYI 356
WNTMI YVQNN PVEAI++F+Q LE +E V DDVT LS L+AVSQLQ++ L +Q HA++
Sbjct: 292 WNTMIVAYVQNNCPVEAIDVFIQALESEEGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFV 351
Query: 357 IKNFVALPVIVLNAV--------------------IERDVVSWNTMISAFVQNGLDDEGL 396
IK+ +I+LNAV +ERD VSWNT+ISAFVQNG D+E L
Sbjct: 352 IKSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEAL 411
Query: 397 MLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYA 456
MLV EMQKQ F+IDSVT TALLSAASNLRN VGKQTHAYL+R GI FEGMESYLIDMYA
Sbjct: 412 MLVCEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQFEGMESYLIDMYA 471
Query: 457 KSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTI 516
KSG I+TA +FE+N S DRDQATWNA+IAGYTQNGL E+A + +QML NV PN VT+
Sbjct: 472 KSGSIRTAELLFEQNCSSDRDQATWNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTL 531
Query: 517 ASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE 576
AS+LPAC+ MG++ L +QLHGFSIR L++NV+VGTSL D YSK G I+YA NVF + PE
Sbjct: 532 ASILPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTPE 591
Query: 577 KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQI 636
KNSVTYTTM++ YGQHGM +RAL+L+ SM GI PDA+TFVA+LSAC+Y+GLVDEGLQI
Sbjct: 592 KNSVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVAILSACNYSGLVDEGLQI 651
Query: 637 FDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLH 696
F+ M++ +KI+PS EHYCCVADMLGRVG+VVEAYEFVK LGE+ N +EIWGSLLGSCR H
Sbjct: 652 FESMEKVHKIKPSIEHYCCVADMLGRVGRVVEAYEFVKGLGEDANTMEIWGSLLGSCRNH 711
Query: 697 GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGC 756
GH EL + VAKKLL M M GYHVLLSNIYAEEG WE VD+VRK+M+E+GL KE GC
Sbjct: 712 GHFELGKAVAKKLLNMGMDKRMAGYHVLLSNIYAEEGEWEKVDRVRKQMKEKGLHKETGC 771
Query: 757 SWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAGNKTIQNSNVDATPRFDE 813
SW+++ G+VN F S+D++HPQS +IY ML+ L ++M+ AG K + N++ DE
Sbjct: 772 SWVEIAGFVNCFVSRDEKHPQSSEIYYMLDMLTLDMKYAGYKPQYSLNLNTILDSDE 828
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 958 bits (2477), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/643 (68%), Positives = 544/643 (84%), Gaps = 20/643 (3%)
Query: 178 LVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALS 237
L+ KVF TM +R+V+AWNT+VSWYVKTERYVEA+RQFR+M++ GI+PS +SFVNVFPA+S
Sbjct: 52 LLHKVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAIS 111
Query: 238 SLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVW 297
S+GD+K+A+V+YG+L+KLG+EY NDLFV SSAI MYAELGC D RK+FD+CLE++ EVW
Sbjct: 112 SVGDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVW 171
Query: 298 NTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYII 357
NTMIGG++QNN +E + LF+Q ++ + + DDVTFLSAL+AVSQLQ L LGQQ+HA+ +
Sbjct: 172 NTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTM 231
Query: 358 KNFVALPVIVLNAVI--------------------ERDVVSWNTMISAFVQNGLDDEGLM 397
KN L V VLNA++ E+DVVSWNTMIS F+QNGLD+EGLM
Sbjct: 232 KNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLM 291
Query: 398 LVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAK 457
LVYEMQKQGF+ DSVTVT+LLSAASNLRN+++GKQTHAYL+RHGI F+GM+SYLIDMYAK
Sbjct: 292 LVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDGMDSYLIDMYAK 351
Query: 458 SGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIA 517
SGLI+ ++++FE N+ +RDQATWNA+IAGYTQNGL+E+AF+ FR MLE N+ PN VT+A
Sbjct: 352 SGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLA 411
Query: 518 SVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK 577
S+LPAC+ +G+I LGKQLHG SIRY LDQN+FV T+L+DMYSKSG INYA +VF + E+
Sbjct: 412 SILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSER 471
Query: 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIF 637
NSVTYTTMILGYGQHGM E ALSLF SMK GI+PDAITFVAVLSACSYAGLVDEGL+IF
Sbjct: 472 NSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIF 531
Query: 638 DLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHG 697
+ M++++KIQPST HYCCVADMLGRVG+V+EAYEFVK+LGEEG+V+EIWGSLLG+CRLHG
Sbjct: 532 ESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSLLGACRLHG 591
Query: 698 HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCS 757
H EL E V+ +LLEM++ + + GY VLLSN+YAEE NWE VDK+RK MRE+GLRKEVGCS
Sbjct: 592 HIELGEEVSNRLLEMNSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREKGLRKEVGCS 651
Query: 758 WIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAGNKTI 800
WID GG + RF SKD++H + +IYEMLERLAMEM + +K++
Sbjct: 652 WIDTGGLLVRFVSKDKDHTRCEEIYEMLERLAMEMEDNDHKSL 694
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499507|ref|XP_003518581.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/786 (54%), Positives = 564/786 (71%), Gaps = 81/786 (10%)
Query: 41 TIRSRLSKICQEGRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSS 100
+IRSRLSK+CQ+G+PHLAR L D++ R ++ +WNT+IIGF+CN++P EA+ LY++MK SS
Sbjct: 24 SIRSRLSKLCQQGQPHLARHLLDTLPRASSAVWNTVIIGFICNHMPLEALHLYAEMK-SS 82
Query: 101 PYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLD 160
P T D YT+SS LKAC+ T+NL GKA+H HF+R SN SR VYNSLLNMYS CL
Sbjct: 83 PDTPSDCYTFSSTLKACSLTQNLLAGKAIHSHFLRSQSN-SRIVYNSLLNMYSVCLPPST 141
Query: 161 AEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRM 220
+ S+ D V KVF MR+RNVVAWNT++SWYVKT R + A+R F +++
Sbjct: 142 VQ-----------SQLDYVLKVFAFMRKRNVVAWNTLISWYVKTHRQLHALRAFATLIKT 190
Query: 221 GIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFD 280
I P+ ++FVNVFPA+ D K+A + Y LL+K G++Y ND+F SSAI M+A+LGC D
Sbjct: 191 SITPTPVTFVNVFPAVP---DPKTALMFYALLLKFGADYANDVFAVSSAIVMFADLGCLD 247
Query: 281 FARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAV 340
+AR +FD C +NTEVWNTMIGGYVQNN P++ I++F++ LE +E V D+VTFLS + AV
Sbjct: 248 YARMVFDRCSNKNTEVWNTMIGGYVQNNCPLQGIDVFLRALESEEAVCDEVTFLSVICAV 307
Query: 341 SQLQELDLGQQLHAYIIKNFVALPVIVLNAVI--------------------ERDVVSWN 380
S LQ++ L QQLHA+++K+ PVIV+NA++ +RD VSWN
Sbjct: 308 SLLQQIKLAQQLHAFVLKSLAVTPVIVVNAIMVMYSRCNFVDTSLKVFDNMPQRDAVSWN 367
Query: 381 TMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRH 440
T+IS+FVQNGLD+E LMLV EM+KQ F IDSVT TALLSAASN+R+ +G+QTHAYL+RH
Sbjct: 368 TIISSFVQNGLDEEALMLVCEMEKQKFPIDSVTATALLSAASNIRSSYIGRQTHAYLIRH 427
Query: 441 GIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVA 500
GI FEGMESYLIDMYAKS L++T+ +FE+N DRD ATWNAMIAGYTQNGL ++A +
Sbjct: 428 GIQFEGMESYLIDMYAKSRLVRTSELLFEQNCPSDRDLATWNAMIAGYTQNGLSDKAILI 487
Query: 501 FRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK 560
R+ L H V PN VT+AS+LPAC+ MG+ +QLH F+IR+ D
Sbjct: 488 LREALVHKVMPNAVTLASILPACSSMGSTTFARQLHAFAIRHSDDXXX------------ 535
Query: 561 SGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAV 620
AL+L+ SM CGI+PDA+TFVA+
Sbjct: 536 ---------------------------------XXXXALALYDSMLRCGIKPDAVTFVAI 562
Query: 621 LSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEG 680
LSACSY+GLV+EGL IF+ M + ++++PS EHYCCVADMLGRVG+VVEAYEFV+ LGE+G
Sbjct: 563 LSACSYSGLVEEGLHIFESMDKVHQVKPSIEHYCCVADMLGRVGRVVEAYEFVQRLGEDG 622
Query: 681 NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDK 740
N +EIWGS+LG+C+ HG+ EL +V+A+KLL M+T + GYHVLLSNIYAEEG WENVD+
Sbjct: 623 NAIEIWGSILGACKNHGYFELGKVIAEKLLNMETEKRIAGYHVLLSNIYAEEGEWENVDR 682
Query: 741 VRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAGNKTI 800
VR +M+E+GL+KE+GCSW+++ G VN F S+D++HPQS +IY +L++L M+M++AG K
Sbjct: 683 VRNQMKEKGLQKEMGCSWVEIAGCVNFFVSRDEKHPQSGEIYYILDKLTMDMKDAGYKPC 742
Query: 801 QNSNVD 806
NSN++
Sbjct: 743 NNSNLN 748
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115460348|ref|NP_001053774.1| Os04g0602600 [Oryza sativa Japonica Group] gi|38344148|emb|CAE01824.2| OSJNBa0041A02.15 [Oryza sativa Japonica Group] gi|113565345|dbj|BAF15688.1| Os04g0602600 [Oryza sativa Japonica Group] gi|125549608|gb|EAY95430.1| hypothetical protein OsI_17272 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/773 (49%), Positives = 527/773 (68%), Gaps = 46/773 (5%)
Query: 44 SRLSKICQEGR-PHLARQLFDSITRPT-TVIWNTIIIGFVCNNLPYEAILLYSQMKKSS- 100
S++ K+C++GR H R L +++ RP T++ N ++I + LP EA+ LY+ + ++
Sbjct: 39 SQVKKLCKQGRLDHARRLLLEALPRPPPTLLCNALLIAYAARALPEEALRLYALLNHAAR 98
Query: 101 PYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIR-CFSNPSRFVY-NSLLNMYSTCLSS 158
P D+YTYS+ L ACA +R LR+G++VH H +R S P V NSLLN+Y++ +
Sbjct: 99 PPVRSDHYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSV-- 156
Query: 159 LDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMML 218
+Y E ++ D+V ++FD M +RNVV+WNT+ WYVKT R EA+ F ML
Sbjct: 157 --------RYRE---ARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRML 205
Query: 219 RMGIRPSTISFVNVFPALSSLGDYKSADV-VYGLLVKLGSEYVNDLFVASSAIFMYAELG 277
G RP+ +SFVN+FPA ++ D S +YGLLVK G EY+NDLFV SSAI M++E G
Sbjct: 206 EDGFRPTPVSFVNIFPA--AVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFG 263
Query: 278 CFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSAL 337
AR++FD ++NTEVWNTMI GYVQN EAI+LF ++L E+ D VTFLSAL
Sbjct: 264 DVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSAL 323
Query: 338 SAVSQLQELDLGQQLHAYIIKNF-VALPVIVLNAVI--------------------ERDV 376
+A SQ Q++ LGQQLH Y+IK LPVI+ NA++ E+D+
Sbjct: 324 TAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDI 383
Query: 377 VSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAY 436
V+WNTM++AF+QN D EGL+LVYEMQK GF DSVT+TA+LSA+SN + +GKQ H Y
Sbjct: 384 VTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGY 443
Query: 437 LLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEE 496
L+RHGI EG+ESYLIDMYAKSG ++ A+++F+ + RD+ TWNAMIAGYTQ+G E+
Sbjct: 444 LIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEK 503
Query: 497 AFVAFRQMLEHNVTPNVVTIASVLPACNPM-GNIELGKQLHGFSIRYLLDQNVFVGTSLI 555
A + FR MLE + P VT+ASVLPAC+P+ G + GKQ+H F++R LD NVFVGT+LI
Sbjct: 504 AILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALI 563
Query: 556 DMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI 615
DMYSK G I A NVF + K++VTYTTMI G GQHG ++AL+LF SM+ G++PDA+
Sbjct: 564 DMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAV 623
Query: 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKE 675
TF++ +SAC+Y+GLVDEGL ++ M + I + +H+CCVAD+L + G+V EAYEF++
Sbjct: 624 TFLSAISACNYSGLVDEGLALYRSM-DSFGISATPQHHCCVADLLAKAGRVEEAYEFIEG 682
Query: 676 LGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW 735
LGEEGN + IWGSLL SC+ G ELA++V KKLL+++ + GY VLLS + A E NW
Sbjct: 683 LGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNW 742
Query: 736 ENVDKVRKEMRERGLRKEVGCSWIDV--GGYVNRFASKDQEHPQSHKIYEMLE 786
+ D +RKEMR RGL+KE G SWI V ++F KDQ + ++ ++ +L+
Sbjct: 743 NSADSLRKEMRARGLKKEAGSSWIKVQNAALEHKFIEKDQNYVENEHMFSILD 795
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 813 | ||||||
| TAIR|locus:2090444 | 820 | AT3G22150 "AT3G22150" [Arabido | 0.517 | 0.513 | 0.688 | 1.2e-276 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.512 | 0.486 | 0.386 | 1.3e-107 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.522 | 0.481 | 0.361 | 1.9e-106 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.521 | 0.437 | 0.362 | 1e-103 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.520 | 0.485 | 0.394 | 1.1e-101 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.419 | 0.489 | 0.417 | 1.6e-100 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.824 | 0.845 | 0.334 | 2.5e-100 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.512 | 0.405 | 0.350 | 1.2e-99 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.821 | 0.785 | 0.329 | 5e-99 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.523 | 0.478 | 0.363 | 1.6e-98 |
| TAIR|locus:2090444 AT3G22150 "AT3G22150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1580 (561.2 bits), Expect = 1.2e-276, Sum P(2) = 1.2e-276
Identities = 290/421 (68%), Positives = 361/421 (85%)
Query: 373 ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQ 432
ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF ID +TVTALLSAASNLRN+++GKQ
Sbjct: 381 ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQ 440
Query: 433 THAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNG 492
THA+L+R GI FEGM SYLIDMY+KSGLI+ ++++FE + +RDQATWN+MI+GYTQNG
Sbjct: 441 THAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNG 500
Query: 493 LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGT 552
E+ F+ FR+MLE N+ PN VT+AS+LPAC+ +G+++LGKQLHGFSIR LDQNVFV +
Sbjct: 501 HTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVAS 560
Query: 553 SLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP 612
+L+DMYSK+G I YA ++F++ E+NSVTYTTMILGYGQHGM ERA+SLF SM+ GI+P
Sbjct: 561 ALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKP 620
Query: 613 DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEF 672
DAITFVAVLSACSY+GL+DEGL+IF+ M++ Y IQPS+EHYCC+ DMLGRVG+V EAYEF
Sbjct: 621 DAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEF 680
Query: 673 VKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE 732
VK LGEEGN+ E+WGSLLGSC+LHG ELAE V+++L + D + GY VLLSN+YAEE
Sbjct: 681 VKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEE 740
Query: 733 GNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEM 792
W++VDKVR+ MRE+GL+KEVG S I++ GYVN F S+DQEHP S +IY++++ LA +M
Sbjct: 741 QKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIYDVIDGLAKDM 800
Query: 793 R 793
R
Sbjct: 801 R 801
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 765 (274.4 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 164/424 (38%), Positives = 249/424 (58%)
Query: 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTH 434
DVV + MIS ++ NGL + L + + K + +T+ ++L L +G++ H
Sbjct: 405 DVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELH 464
Query: 435 AYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGL 493
++++ G + +IDMYAK G + A +IFE+ RD +WN+MI Q+
Sbjct: 465 GFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSK--RDIVSWNSMITRCAQSDN 522
Query: 494 LEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTS 553
A FRQM + + V+I++ L AC + + GK +HGF I++ L +V+ ++
Sbjct: 523 PSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSEST 582
Query: 554 LIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSM-KGCGIEP 612
LIDMY+K G + A NVF + EKN V++ ++I G HG + +L LF M + GI P
Sbjct: 583 LIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRP 642
Query: 613 DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEF 672
D ITF+ ++S+C + G VDEG++ F M ++Y IQP EHY CV D+ GR G++ EAYE
Sbjct: 643 DQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYET 702
Query: 673 VKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE 732
VK + + +WG+LLG+CRLH + ELAEV + KL+++D NS GY+VL+SN +A
Sbjct: 703 VKSMPFPPDA-GVWGTLLGACRLHKNVELAEVASSKLMDLDPSNS--GYYVLISNAHANA 759
Query: 733 GNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEM 792
WE+V KVR M+ER ++K G SWI++ + F S D HP+S IY +L L E+
Sbjct: 760 REWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGEL 819
Query: 793 RNAG 796
R G
Sbjct: 820 RLEG 823
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 741 (265.9 bits), Expect = 1.9e-106, Sum P(3) = 1.9e-106
Identities = 156/431 (36%), Positives = 246/431 (57%)
Query: 367 VLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRN 426
V N++ +D VSWN++IS ++Q+G E + L M D +T L+S ++ L +
Sbjct: 364 VFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLAD 423
Query: 427 QDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMI 485
GK H+ ++ GI + + + LIDMYAK G + + +IF +GD TWN +I
Sbjct: 424 LKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDT--VTWNTVI 481
Query: 486 AGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLD 545
+ + G QM + V P++ T LP C + LGK++H +R+ +
Sbjct: 482 SACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYE 541
Query: 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSM 605
+ +G +LI+MYSK G + ++ VF ++ ++ VT+T MI YG +G E+AL F M
Sbjct: 542 SELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADM 601
Query: 606 KGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGK 665
+ GI PD++ F+A++ ACS++GLVDEGL F+ M+ YKI P EHY CV D+L R K
Sbjct: 602 EKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQK 661
Query: 666 VVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725
+ +A EF++ + + + IW S+L +CR G E AE V+++++E++ + PGY +L
Sbjct: 662 ISKAEEFIQAMPIKPDA-SIWASVLRACRTSGDMETAERVSRRIIELNPDD--PGYSILA 718
Query: 726 SNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEML 785
SN YA W+ V +RK ++++ + K G SWI+VG V+ F+S D PQS IY+ L
Sbjct: 719 SNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSL 778
Query: 786 ERLAMEMRNAG 796
E L M G
Sbjct: 779 EILYSLMAKEG 789
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 1.0e-103, Sum P(3) = 1.0e-103
Identities = 157/433 (36%), Positives = 261/433 (60%)
Query: 367 VLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRN 426
V + + + V SWN +I Q+ L +M+ G + DS TV +LLSA S L++
Sbjct: 452 VFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKS 511
Query: 427 QDVGKQTHAYLLRHGIHFEGMESYL--IDMYAKSGLIKTARQIFEKNDSGDRDQATWNAM 484
+GK+ H +++R+ + + + YL + +Y G + T + +F+ + D+ +WN +
Sbjct: 512 LRLGKEVHGFIIRNWLERD-LFVYLSVLSLYIHCGELCTVQALFDAME--DKSLVSWNTV 568
Query: 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLL 544
I GY QNG + A FRQM+ + + +++ V AC+ + ++ LG++ H +++++LL
Sbjct: 569 ITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLL 628
Query: 545 DQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRS 604
+ + F+ SLIDMY+K+G I ++ VF + EK++ ++ MI+GYG HG+++ A+ LF
Sbjct: 629 EDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEE 688
Query: 605 MKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVG 664
M+ G PD +TF+ VL+AC+++GL+ EGL+ D M+ + ++P+ +HY CV DMLGR G
Sbjct: 689 MQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAG 748
Query: 665 KVVEAYEFV-KELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHV 723
++ +A V +E+ EE +V IW SLL SCR+H + E+ E VA KL E++ P +V
Sbjct: 749 QLDKALRVVAEEMSEEADV-GIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEK--PENYV 805
Query: 724 LLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYE 783
LLSN+YA G WE+V KVR+ M E LRK+ GCSWI++ V F ++ +I
Sbjct: 806 LLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKS 865
Query: 784 MLERLAMEMRNAG 796
+ L M++ G
Sbjct: 866 LWSILEMKISKMG 878
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
Identities = 171/434 (39%), Positives = 270/434 (62%)
Query: 367 VLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRN 426
V + +R VVS+ +MI+ + + GL E + L EM+++G D TVTA+L+ + R
Sbjct: 353 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRL 412
Query: 427 QDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMI 485
D GK+ H ++ + + F+ + + L+DMYAK G ++ A +F ++ +D +WN +I
Sbjct: 413 LDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF--SEMRVKDIISWNTII 470
Query: 486 AGYTQNGLLEEAFVAFRQMLEHN-VTPNVVTIASVLPACNPMGNIELGKQLHGFSIR--Y 542
GY++N EA F +LE +P+ T+A VLPAC + + G+++HG+ +R Y
Sbjct: 471 GGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 530
Query: 543 LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLF 602
D++V SL+DMY+K G + A +F I K+ V++T MI GYG HG + A++LF
Sbjct: 531 FSDRHV--ANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALF 588
Query: 603 RSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR 662
M+ GIE D I+FV++L ACS++GLVDEG + F++M+ E KI+P+ EHY C+ DML R
Sbjct: 589 NQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 648
Query: 663 VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722
G +++AY F++ + + IWG+LL CR+H +LAE VA+K+ E++ N+ GY+
Sbjct: 649 TGDLIKAYRFIENMPIPPDAT-IWGALLCGCRIHHDVKLAEKVAEKVFELEPENT--GYY 705
Query: 723 VLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIY 782
VL++NIYAE WE V ++RK + +RGLRK GCSWI++ G VN F + D +P++ I
Sbjct: 706 VLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIE 765
Query: 783 EMLERLAMEMRNAG 796
L ++ M G
Sbjct: 766 AFLRKVRARMIEEG 779
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 147/352 (41%), Positives = 216/352 (61%)
Query: 448 ESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEH 507
E+ +I YA + K AR +F K +R+ +WNA+IAGYTQNG EEA F +
Sbjct: 323 ETSMISGYAMAASTKAARLMFTK--MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRE 380
Query: 508 NVTPNVVTIASVLPACNPMGNIELGKQLH------GFSIRYLLDQNVFVGTSLIDMYSKS 561
+V P + A++L AC + + LG Q H GF + + ++FVG SLIDMY K
Sbjct: 381 SVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKC 440
Query: 562 GVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVL 621
G + VF K+ E++ V++ MI+G+ Q+G AL LFR M G +PD IT + VL
Sbjct: 441 GCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVL 500
Query: 622 SACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGN 681
SAC +AG V+EG F M +++ + P +HY C+ D+LGR G + EA ++E+ + +
Sbjct: 501 SACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPD 560
Query: 682 VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKV 741
+ IWGSLL +C++H + L + VA+KLLE++ NS P +VLLSN+YAE G WE+V V
Sbjct: 561 SV-IWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGP--YVLLSNMYAELGKWEDVMNV 617
Query: 742 RKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMR 793
RK MR+ G+ K+ GCSWI + G+ + F KD+ HP+ +I+ +L+ L EMR
Sbjct: 618 RKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 973 (347.6 bits), Expect = 2.5e-100, Sum P(2) = 2.5e-100
Identities = 238/711 (33%), Positives = 387/711 (54%)
Query: 112 SVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNS---LLNMYSTCLSSLDAEMVGLKY 168
+V A AET I K + F + ++ S +L+ + +S L L
Sbjct: 5 TVSSATAETTAALISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSD 64
Query: 169 VEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRM-GIRPSTI 227
+ Y D +F +++R +V +N ++ + E ++ F + + ++P++
Sbjct: 65 LGAIYYARD----IFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSS 120
Query: 228 SFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFD 287
++ A S D ++ V++G V G + ++L + S+ + MY + + ARK+FD
Sbjct: 121 TYAFAISAASGFRDDRAGRVIHGQAVVDGCD--SELLLGSNIVKMYFKFWRVEDARKVFD 178
Query: 288 NCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELD 347
E++T +WNTMI GY +N VE+I++F ++ D T L L AV++LQEL
Sbjct: 179 RMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELR 238
Query: 348 LGQQLHA-----------YIIKNFVAL----PVIVLNAVIER-----DVVSWNTMISAFV 387
LG Q+H+ Y++ F++L I + + + R D+V++N MI +
Sbjct: 239 LGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYT 298
Query: 388 QNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHG-IHFEG 446
NG + L L E+ G + S T+ +L+ + +L + H Y L+ +
Sbjct: 299 SNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLM---LIYAIHGYCLKSNFLSHAS 355
Query: 447 MESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLE 506
+ + L +Y+K I++AR++F+ +S ++ +WNAMI+GYTQNGL E+A FR+M +
Sbjct: 356 VSTALTTVYSKLNEIESARKLFD--ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQK 413
Query: 507 HNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINY 566
+PN VTI +L AC +G + LGK +H + +++V T+LI MY+K G I
Sbjct: 414 SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAE 473
Query: 567 AANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY 626
A +F + +KN VT+ TMI GYG HG + AL++F M GI P +TF+ VL ACS+
Sbjct: 474 ARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSH 533
Query: 627 AGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEI 685
AGLV EG +IF+ M Y +PS +HY C+ D+LGR G + A +F++ + E G+ +
Sbjct: 534 AGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGS--SV 591
Query: 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEM 745
W +LLG+CR+H + LA V++KL E+D N GYHVLLSNI++ + N+ VR+
Sbjct: 592 WETLLGACRIHKDTNLARTVSEKLFELDPDNV--GYHVLLSNIHSADRNYPQAATVRQTA 649
Query: 746 RERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAG 796
++R L K G + I++G + F S DQ HPQ +IYE LE+L +MR AG
Sbjct: 650 KKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAG 700
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| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 1.2e-99, Sum P(3) = 1.2e-99
Identities = 149/425 (35%), Positives = 243/425 (57%)
Query: 367 VLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRN 426
V +++ E VVS N +I+ + QN L+ E ++L EM +G +T ++ A +
Sbjct: 586 VFSSLPEWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACHKPES 644
Query: 427 QDVGKQTHAYLLRHGIHFEG--MESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAM 484
+G Q H + + G EG + L+ MY S + A +F + S + W M
Sbjct: 645 LTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSS-PKSIVLWTGM 703
Query: 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLL 544
++G++QNG EEA +++M V P+ T +VL C+ + ++ G+ +H
Sbjct: 704 MSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAH 763
Query: 545 DQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK-NSVTYTTMILGYGQHGMSERALSLFR 603
D + +LIDMY+K G + ++ VF ++ + N V++ ++I GY ++G +E AL +F
Sbjct: 764 DLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFD 823
Query: 604 SMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRV 663
SM+ I PD ITF+ VL+ACS+AG V +G +IF++M +Y I+ +H C+ D+LGR
Sbjct: 824 SMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRW 883
Query: 664 GKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHV 723
G + EA +F++ + + +W SLLG+CR+HG E+ A+KL+E++ +NS +V
Sbjct: 884 GYLQEADDFIEAQNLKPDA-RLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSA--YV 940
Query: 724 LLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYE 783
LLSNIYA +G WE + +RK MR+RG++K G SWIDV + FA+ D+ H + KI
Sbjct: 941 LLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIEM 1000
Query: 784 MLERL 788
LE L
Sbjct: 1001 FLEDL 1005
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| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 236/717 (32%), Positives = 391/717 (54%)
Query: 106 DNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVG 165
D+ T+SS+LK+C R+ R+GK VH I P +YNSL+++YS S AE
Sbjct: 61 DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAE--- 117
Query: 166 LKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPS 225
D V + +R+VV+W+ +++ Y R ++A++ F L +G+ P+
Sbjct: 118 -----------D-VFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPN 165
Query: 226 TISFVNVFPALSSLGDYKSAD-VVYGLLVKLGSEYVNDLFVASSAIFMYAE-LGCFDFAR 283
+ V A S+ D+ V G L+K G + +D+ V S I M+ + F+ A
Sbjct: 166 DYCYTAVIRACSN-SDFVGVGRVTLGFLMKTG-HFESDVCVGCSLIDMFVKGENSFENAY 223
Query: 284 KIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQL 343
K+FD E N W MI +Q P EAI F+ ++ L D T S SA ++L
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMV-LSGFESDKFTLSSVFSACAEL 282
Query: 344 QELDLGQQLHAYIIKNF----VALPVIVLNA-------------VIER----DVVSWNTM 382
+ L LG+QLH++ I++ V ++ + A V +R V+SW +
Sbjct: 283 ENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTAL 342
Query: 383 ISAFVQN-GLDDEGLMLVYEMQKQGFMIDS-VTVTALLSAASNLRNQDVGKQTHAYLLRH 440
I+ +++N L E + L EM QG + + T ++ A NL + VGKQ +
Sbjct: 343 ITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR 402
Query: 441 GIHFEG-MESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFV 499
G+ + + +I M+ KS ++ A++ FE +++ ++N + G +N E+AF
Sbjct: 403 GLASNSSVANSVISMFVKSDRMEDAQRAFES--LSEKNLVSYNTFLDGTCRNLNFEQAFK 460
Query: 500 AFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYS 559
++ E + + T AS+L +G+I G+Q+H ++ L N V +LI MYS
Sbjct: 461 LLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYS 520
Query: 560 KSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVA 619
K G I+ A+ VF + +N +++T+MI G+ +HG + R L F M G++P+ +T+VA
Sbjct: 521 KCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVA 580
Query: 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEE 679
+LSACS+ GLV EG + F+ M +++KI+P EHY C+ D+L R G + +A+EF+ + +
Sbjct: 581 ILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQ 640
Query: 680 GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVD 739
+VL +W + LG+CR+H ++EL ++ A+K+LE+D P ++ LSNIYA G WE
Sbjct: 641 ADVL-VWRTFLGACRVHSNTELGKLAARKILELDPNE--PAAYIQLSNIYACAGKWEEST 697
Query: 740 KVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAG 796
++R++M+ER L KE GCSWI+VG +++F D HP +H+IY+ L+RL E++ G
Sbjct: 698 EMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCG 754
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| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 1.6e-98, Sum P(2) = 1.6e-98
Identities = 161/443 (36%), Positives = 274/443 (61%)
Query: 367 VLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQ-GFMIDSVTVTALLSAASNLR 425
V + + +R + WN MI+ + QN D E L+L M++ G + +S T+ ++ A
Sbjct: 360 VFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419
Query: 426 NQDVGKQTHAYLLRHGIHFEG-MESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAM 484
+ H ++++ G+ + +++ L+DMY++ G I A +IF K + DRD TWN M
Sbjct: 420 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME--DRDLVTWNTM 477
Query: 485 IAGYTQNGLLEEAFVAFRQM--LEHNVT---------PNVVTIASVLPACNPMGNIELGK 533
I GY + E+A + +M LE V+ PN +T+ ++LP+C + + GK
Sbjct: 478 ITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGK 537
Query: 534 QLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHG 593
++H ++I+ L +V VG++L+DMY+K G + + VF +IP+KN +T+ +I+ YG HG
Sbjct: 538 EIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHG 597
Query: 594 MSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHY 653
+ A+ L R M G++P+ +TF++V +ACS++G+VDEGL+IF +M+ +Y ++PS++HY
Sbjct: 598 NGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHY 657
Query: 654 CCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMD 713
CV D+LGR G++ EAY+ + + + N W SLLG+ R+H + E+ E+ A+ L++++
Sbjct: 658 ACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLE 717
Query: 714 TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQ 773
++ ++VLL+NIY+ G W+ +VR+ M+E+G+RKE GCSWI+ G V++F + D
Sbjct: 718 P--NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDS 775
Query: 774 EHPQSHKIYEMLERLAMEMRNAG 796
HPQS K+ LE L MR G
Sbjct: 776 SHPQSEKLSGYLETLWERMRKEG 798
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LIE7 | PP246_ARATH | No assigned EC number | 0.6321 | 0.9335 | 0.9256 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00037539001 | SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (825 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 813 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-144 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-93 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-43 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam06346 | 160 | pfam06346, Drf_FH1, Formin Homology Region 1 | 3e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-04 | |
| pfam06346 | 160 | pfam06346, Drf_FH1, Formin Homology Region 1 | 5e-04 | |
| pfam06346 | 160 | pfam06346, Drf_FH1, Formin Homology Region 1 | 5e-04 | |
| pfam06346 | 160 | pfam06346, Drf_FH1, Formin Homology Region 1 | 6e-04 | |
| PHA01732 | 94 | PHA01732, PHA01732, proline-rich protein | 7e-04 | |
| pfam06346 | 160 | pfam06346, Drf_FH1, Formin Homology Region 1 | 0.001 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam06346 | 160 | pfam06346, Drf_FH1, Formin Homology Region 1 | 0.003 | |
| pfam06346 | 160 | pfam06346, Drf_FH1, Formin Homology Region 1 | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 445 bits (1146), Expect = e-144
Identities = 251/819 (30%), Positives = 414/819 (50%), Gaps = 62/819 (7%)
Query: 12 PPPPTATPP-PPQLPQIHSLSPPIPKLKTPTIRSRLSKICQEGRPHLARQLFDSITRPTT 70
PP P P L Q+ S P GR + + +T
Sbjct: 2 QPPHFYLNPGKPNLFQLASHKAPNVLPYWNF----------HGRKRSRGLSVAASSSSST 51
Query: 71 VIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVH 130
N+ + + +A+ L M++ D Y ++ + C R + G V
Sbjct: 52 HDSNSQLRALCSHGQLEQALKLLESMQELR--VPVDEDAYVALFRLCEWKRAVEEGSRVC 109
Query: 131 CHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRN 190
+ + + N++L+M+ +++ E+ ++ Y VF M R+
Sbjct: 110 SRALSSHPSLGVRLGNAMLSMF-------------VRFGELVHAWY-----VFGKMPERD 151
Query: 191 VVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYG 250
+ +WN +V Y K + EA+ + ML G+RP +F V + D V+
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211
Query: 251 LLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHP 310
+V+ G + D+ V ++ I MY + G AR +FD R+ WN MI GY +N
Sbjct: 212 HVVRFG--FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC 269
Query: 311 VEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNA 370
+E +ELF + EL + D +T S +SA L + LG+++H Y++K A+ V V N+
Sbjct: 270 LEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328
Query: 371 VIE--------------------RDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMID 410
+I+ +D VSW MIS + +NGL D+ L M++ D
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
Query: 411 SVTVTALLSAASNLRNQDVGKQTHAYLLRHG-IHFEGMESYLIDMYAKSGLIKTARQIFE 469
+T+ ++LSA + L + DVG + H R G I + + + LI+MY+K I A ++F
Sbjct: 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448
Query: 470 KNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNI 529
++D +W ++IAG N EA + FRQML + PN VT+ + L AC +G +
Sbjct: 449 N--IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGAL 505
Query: 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGY 589
GK++H +R + + F+ +L+D+Y + G +NYA N F EK+ V++ ++ GY
Sbjct: 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGY 564
Query: 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS 649
HG A+ LF M G+ PD +TF+++L ACS +G+V +GL+ F M+++Y I P+
Sbjct: 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624
Query: 650 TEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709
+HY CV D+LGR GK+ EAY F+ ++ + +WG+LL +CR+H H EL E+ A+ +
Sbjct: 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDP-AVWGALLNACRIHRHVELGELAAQHI 683
Query: 710 LEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFA 769
E+D + GY++LL N+YA+ G W+ V +VRK MRE GL + GCSW++V G V+ F
Sbjct: 684 FELDPNSV--GYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFL 741
Query: 770 SKDQEHPQSHKIYEMLERLAMEMRNAGNKTIQNSNVDAT 808
+ D+ HPQ +I +LE +M+ +G ++S++D
Sbjct: 742 TDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEI 780
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 306 bits (785), Expect = 4e-93
Identities = 146/457 (31%), Positives = 245/457 (53%), Gaps = 11/457 (2%)
Query: 346 LDLGQQLHAYIIKNFVALPVI-----VLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVY 400
+ Q + ++ V ++ + + + ER++ SW T+I V G E L
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 401 EMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMES-YLIDMYAKSG 459
EM + G + T +L A++ L + G+Q H +L+ G+ + S LIDMY+K G
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 460 LIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASV 519
I+ AR +F+ ++ WN+M+AGY +G EEA + +M + V+ + T + +
Sbjct: 274 DIEDARCVFDG--MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
Query: 520 LPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNS 579
+ + + +E KQ H IR ++ T+L+D+YSK G + A NVF ++P KN
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391
Query: 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDL 639
+++ +I GYG HG +A+ +F M G+ P+ +TF+AVLSAC Y+GL ++G +IF
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451
Query: 640 MQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHS 699
M + ++I+P HY C+ ++LGR G + EAY ++ + V +W +LL +CR+H +
Sbjct: 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV-NMWAALLTACRIHKNL 510
Query: 700 ELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWI 759
EL + A+KL M +V+L N+Y G KV + ++ +GL C+WI
Sbjct: 511 ELGRLAAEKLYGMGPEKL--NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568
Query: 760 DVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAG 796
+V + F S D+ HPQS +IY+ L+ L E+ G
Sbjct: 569 EVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 1e-43
Identities = 140/565 (24%), Positives = 241/565 (42%), Gaps = 98/565 (17%)
Query: 33 PIPKLKTPTIRSRLSKICQEGRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILL 92
P P+LK IR +S AR I + + + I C EA+ L
Sbjct: 57 PRPRLKPEPIRIEVS------ESKDARLDDTQIRKSGVSLCSQIEKLVACGRH-REALEL 109
Query: 93 YSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMY 152
+ ++ P+T TY ++++AC +++R KAV+ H P +++ N +L M+
Sbjct: 110 FEILEAGCPFT-LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168
Query: 153 STCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVR 212
C +DA ++FD M RN+ +W TI+ V Y EA
Sbjct: 169 VKCGMLIDAR------------------RLFDEMPERNLASWGTIIGGLVDAGNYREAFA 210
Query: 213 QFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFM 272
FR M G +FV + A + LG ++ ++ ++K G V D FV+ + I M
Sbjct: 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV--VGDTFVSCALIDM 268
Query: 273 YAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVT 332
Y++ G + AR +FD E+ T WN+M+ GY + + EA+ L+ ++ + + D T
Sbjct: 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSIDQFT 327
Query: 333 FLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIE------------------- 373
F + S+L L+ +Q HA +I+ L ++ A+++
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 374 -RDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQ 432
++++SWN +I+ + +G + + + M +G + VT A+LSA
Sbjct: 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC----------- 436
Query: 433 THAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFE--KNDSGDRDQATWNA-MIAGYT 489
SGL + +IF+ + + +A A MI
Sbjct: 437 -----------------------RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473
Query: 490 QNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGK----QLHGFSIRYLLD 545
+ GLL+EA+ R+ P V A++L AC N+ELG+ +L+G L
Sbjct: 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL-- 528
Query: 546 QNVFVGTSLIDMYSKSGVINYAANV 570
N +V L+++Y+ SG AA V
Sbjct: 529 -NNYV--VLLNLYNSSGRQAEAAKV 550
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 1e-11
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 577 KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC 624
+ VTY T+I GY + G E AL LF MK GI+P+ T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 4e-09
Identities = 50/214 (23%), Positives = 94/214 (43%), Gaps = 22/214 (10%)
Query: 552 TSLIDMYSKSGVINYAANVFAKIP----EKNSVTYTTMILGYGQHGMSERALSLFRSMKG 607
T+LI +KSG ++ VF ++ E N T+ +I G + G +A + M+
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 608 CGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK-IQPSTEHY------CCVADML 660
++PD + F A++SAC +G VD + M+ E I P C A
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA--- 592
Query: 661 GRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG 720
G+V + E Y+ + E +G E++ + SC G + A + + + +
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGT-PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD--- 648
Query: 721 YHVLLSNIYAEEGNWENVDK---VRKEMRERGLR 751
V S + G+ ++DK + ++ R++G++
Sbjct: 649 -EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 6e-09
Identities = 59/279 (21%), Positives = 130/279 (46%), Gaps = 32/279 (11%)
Query: 381 TMISAFVQNGLDDEGLMLVYEM-QKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLR 439
M+ + + D +G + V + Q+ G D T L+S + GK + +
Sbjct: 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK-----SGKVDAMFEVF 495
Query: 440 HGIHFEGME------SYLIDMYAKSGLIKTARQIF----EKNDSGDRDQATWNAMIAGYT 489
H + G+E LID A++G + A + KN DR +NA+I+
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR--VVFNALISACG 553
Query: 490 QNGLLEEAFVAFRQML--EHNVTPNVVTIASVLPACNPMGNI----ELGKQLHGFSIRYL 543
Q+G ++ AF +M H + P+ +T+ +++ AC G + E+ + +H ++I+
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 544 LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK----NSVTYTTMILGYGQHGMSERAL 599
+ V T ++ S+ G ++A +++ + +K + V ++ ++ G G ++A
Sbjct: 614 PE----VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 600 SLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFD 638
+ + + GI+ +++ +++ ACS A + L++++
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 4e-08
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPAC 523
D T+N +I GY + G +EEA F +M + + PNV T + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSA 420
DVV++NT+I + + G +E L L EM+K+G + T + L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 68 PTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACA 118
P V +NT+I G+ EA+ L+++MKK + YTYS ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG--IKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA 614
VTY T+I G + G E AL LF+ MK GIEPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-07
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGI 610
VTY ++I GY + G E AL LF+ MK G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 190 NVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISF 229
+VV +NT++ Y K + EA++ F M + GI+P+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 480 TWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNV 513
T+N +I G + G +EEA F++M E + P+V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 480 TWNAMIAGYTQNGLLEEAFVAFRQMLEHNV 509
T+N++I+GY + G LEEA F++M E V
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 44/275 (16%)
Query: 372 IERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMI--DSVTVTALLSAASNLRNQDV 429
++ D V +N +ISA Q+G D ++ EM+ + I D +TV AL+ A +N D
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 430 GKQTHAYLLRHGIHFEGM-ESYLIDMYA--KSGLIKTARQIFE--KNDSGDRDQATWNAM 484
K+ + + + I +G E Y I + + + G A I++ K D+ ++A+
Sbjct: 598 AKEVYQMIHEYNI--KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
Query: 485 I--AGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY 542
+ AG+ G L++AF + + + V+ +S++ AC+ N + +L
Sbjct: 656 VDVAGHA--GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL------- 706
Query: 543 LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLF 602
Y I V T +I + +AL +
Sbjct: 707 ---------------YEDIKSIKLRPTV---------STMNALITALCEGNQLPKALEVL 742
Query: 603 RSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIF 637
MK G+ P+ IT+ +L A D GL +
Sbjct: 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 377 VSWNTMISAFVQNGLDDEGLMLVYEMQKQGF 407
V++N++IS + + G +E L L EM+++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 377 VSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDS 411
V++NT+I + G +E L L EM+++G D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 3e-04
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 7 PLP----LPPPPP----TATPPPPQLPQIHSLSPPIPKL 37
PLP +PPPPP PPPP LP + PP P L
Sbjct: 65 PLPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPL 103
|
This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (99), Expect = 4e-04
Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 4/156 (2%)
Query: 186 MRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSA 245
+ A + +Y EA+ L + P + AL LGDY+ A
Sbjct: 90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEA 149
Query: 246 DVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERN----TEVWNTMI 301
+Y ++L E + + LG ++ A ++ + L+ N E +
Sbjct: 150 LELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLG 209
Query: 302 GGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSAL 337
Y++ EA+E + + LELD + + L+ L
Sbjct: 210 LLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245
|
Length = 291 |
| >gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Query: 7 PLP----LPPPPP----TATPPPPQLPQIHSLSPPIP 35
PLP +PPPPP A PPPP LP + + PP P
Sbjct: 29 PLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPP 65
|
This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160 |
| >gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Query: 7 PLP----LPPPPP----TATPPPPQLPQIHSLSPPIP 35
PLP +PPPPP TA PPPP LP + PP P
Sbjct: 53 PLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPP 89
|
This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160 |
| >gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 6e-04
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Query: 7 PLP----LPPPPP----TATPPPPQLPQIHSLSPPIP 35
PLP +PPPPP T PPPP LP ++ PP P
Sbjct: 17 PLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPP 53
|
This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160 |
| >gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 7e-04
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 5 SVPLPLPPPPPTATPPPPQLPQIHSLSPPIPKLKT-----PTIRSRLSKICQE 52
P P P PP PPPP P + P P +K P IR SK Q+
Sbjct: 8 KPPEPPAPLPPAPVPPPPPAPP--APVPE-PTVKPVNAEAPKIREAQSKRGQK 57
|
Length = 94 |
| >gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 7 PLP----LPPPPPTA-----TPPPPQLPQIHSLSPPIPKLKTPTI 42
PLP +PPPPP PPPP LP ++ PP P P +
Sbjct: 77 PLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGV 121
|
This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 235 ALSSLGDYKSADVVYGLLVKLG---SEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE 291
LGDY A Y ++L ++ +L A Y +LG ++ A + ++ LE
Sbjct: 9 LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAA------YYKLGKYEEALEDYEKALE 62
Query: 292 ---RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDE 325
N + + + Y + EA+E + + LELD
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 43/236 (18%), Positives = 99/236 (41%), Gaps = 44/236 (18%)
Query: 571 FAKIPEKNSVTYTTMILGYGQHGM-SERALSLFRSMKGCGIEPDAITFVAVLSACSYAGL 629
FAK+ +++ M++ + AL + R ++ G++ D + ++S C+ +G
Sbjct: 428 FAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 630 VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAY------------------- 670
VD ++F M ++ + + + D R G+V +A+
Sbjct: 488 VDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 671 EFVKELGEEGNVLEIW--------------------GSLLGSCRLHGHSELAEVVAKKLL 710
+ G+ G V + G+L+ +C G + A+ V + +
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606
Query: 711 EMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLR-KEVGCS-WIDVGGY 764
E + + + Y + + N +++G+W+ + +M+++G++ EV S +DV G+
Sbjct: 607 EYNIKGTPEVYTIAV-NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 578 NSVTYTTMILGYGQHGMSERALSLFRSMK 606
+ VTY T+I G + G + A+ L M+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 480 TWNAMIAGYTQNGLLEEAFVAFRQM 504
T+N +I G + G ++EA +M
Sbjct: 9 TYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEP 612
TY ++L + G + AL++ MK G++P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 479 ATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTP 511
T+NA++ + G + A +M + P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.003
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 7 PLP----LPPPPP----TATPPPPQLPQIHSLSPPIP 35
PLP +PPPPP PPPP LP + PP P
Sbjct: 5 PLPGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPP 41
|
This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160 |
| >gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.003
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 9/40 (22%)
Query: 7 PLP----LPPPPP-----TATPPPPQLPQIHSLSPPIPKL 37
PLP +PPPPP A PPPP LP + PP P
Sbjct: 89 PLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPF 128
|
This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 192 VAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPST 226
V +NT++ K R EA+ F+ M GI P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 813 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.67 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.47 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.46 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.46 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.4 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.36 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.22 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.22 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.22 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.21 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.2 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.13 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.12 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.1 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.1 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.09 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.06 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.05 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.02 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.01 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.0 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.98 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.96 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.94 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.89 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.89 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.85 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.8 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.71 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.71 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.68 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.66 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.64 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.58 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.55 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.52 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.51 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.49 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.42 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.42 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.41 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.4 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.39 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.37 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.32 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.31 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.14 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.09 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.06 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.03 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.02 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.99 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.96 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.94 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.91 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.9 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.88 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.79 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.79 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.77 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.77 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.74 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.73 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.71 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.7 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.68 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.63 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.62 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.61 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.56 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.55 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.55 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.55 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.53 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.52 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.49 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.49 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.49 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.48 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.35 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.29 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.28 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.16 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.15 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.14 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.13 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.11 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.06 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.04 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.03 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.01 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.0 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.0 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.96 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.93 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.92 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.9 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.82 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.78 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.75 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.74 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.72 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.69 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.69 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.64 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.63 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.63 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.62 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.6 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.6 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.54 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.51 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.46 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.44 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.41 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.4 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.37 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.31 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.29 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.21 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.19 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.15 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.15 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.01 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.9 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.84 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.78 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.77 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.71 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.65 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.65 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.64 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.54 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.46 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.22 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.19 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.13 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.12 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.11 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.97 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.92 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.87 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.77 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.73 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.69 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.65 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.61 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.54 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.51 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.43 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.38 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.34 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.33 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.16 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.08 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.99 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.91 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.89 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.79 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.77 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.76 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.75 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.73 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.71 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.71 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.0 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.98 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.78 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.69 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.69 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.68 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.61 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.55 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.11 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 92.1 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.67 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.55 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.46 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.4 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.3 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.04 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.57 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.44 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.09 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.98 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.95 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.75 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.71 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.66 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.6 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.23 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.16 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.06 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.04 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.02 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.93 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.89 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.77 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.7 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 87.68 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.63 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.04 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.02 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.99 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 86.47 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.41 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.31 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.25 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.14 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.0 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.54 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.28 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.2 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.78 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.62 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.62 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 84.53 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 84.33 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.15 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 83.72 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.69 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 82.94 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.88 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.82 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 82.6 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.31 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 82.25 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 82.13 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 81.89 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.23 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 81.2 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 80.94 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.71 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-104 Score=916.60 Aligned_cols=706 Identities=33% Similarity=0.591 Sum_probs=686.7
Q ss_pred CCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHh
Q 046631 66 TRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVY 145 (813)
Q Consensus 66 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (813)
..++..++|.++.++++.|++++|..+|+.|.+.| ..|+..+|..++.+|.+.+.++.|.++|..+.+.+..++..++
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELR--VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 45677889999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 046631 146 NSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPS 225 (813)
Q Consensus 146 ~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 225 (813)
|+|+.+|+++ |+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||
T Consensus 125 n~li~~~~~~------------------g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd 186 (857)
T PLN03077 125 NAMLSMFVRF------------------GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186 (857)
T ss_pred HHHHHHHHhC------------------CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHH
Q 046631 226 TISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYV 305 (813)
Q Consensus 226 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 305 (813)
..||+.++++|+..+++..+.+++..+.+.|.. ||..++|+|+.+|+++|++++|.++|++|+++|+++||++|.+|+
T Consensus 187 ~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~ 264 (857)
T PLN03077 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE--LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264 (857)
T ss_pred hhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC--cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 999999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccC-------------
Q 046631 306 QNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAV------------- 371 (813)
Q Consensus 306 ~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~------------- 371 (813)
+.|++++|+++| ..|...|+.||..||+.++.+|++.|+.+.|.+++..+.+ |+..+ ..+.+++
T Consensus 265 ~~g~~~eAl~lf-~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d-~~~~n~Li~~y~k~g~~~~A 342 (857)
T PLN03077 265 ENGECLEGLELF-FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD-VSVCNSLIQMYLSLGSWGEA 342 (857)
T ss_pred hCCCHHHHHHHH-HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc-hHHHHHHHHHHHhcCCHHHH
Confidence 999999999999 8899999999999999999999999999999999999999 77666 5444444
Q ss_pred -------CCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 046631 372 -------IERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHF 444 (813)
Q Consensus 372 -------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 444 (813)
..||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.+
T Consensus 343 ~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred HHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 046631 445 E-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPAC 523 (813)
Q Consensus 445 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 523 (813)
+ .++++|+++|+++|++++|.++|++|. ++|+++||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSAC 499 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHH
Confidence 9 999999999999999999999999999 78999999999999999999999999999986 5999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 046631 524 NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFR 603 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (813)
++.|+++.+.+++..+.+.|+.++..++|+||++|+++|++++|.++|+++ .+|..+||+||.+|+++|+.++|+++|+
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChH
Q 046631 604 SMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVL 683 (813)
Q Consensus 604 ~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 683 (813)
+|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|+..|+..
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~ 658 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA 658 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHH
Confidence 99999999999999999999999999999999999999777999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECC
Q 046631 684 EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGG 763 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 763 (813)
+|++|+.+|+.+|+.+.++.+.+++++++|++ +.+|++|+++|+..|+|++|.++++.|+++|++++||+|||++++
T Consensus 659 -~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~--~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 659 -VWGALLNACRIHRHVELGELAAQHIFELDPNS--VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--cchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCCccCCC
Q 046631 764 YVNRFASKDQEHPQSHKIYEMLERLAMEMRNAGNKTIQN 802 (813)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~c~ 802 (813)
.+|.|..||.+||+.++||.+|+.|..+|++.||.++-.
T Consensus 736 ~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 736 KVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred EEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 999999999999999999999999999999999987643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-80 Score=718.72 Aligned_cols=595 Identities=27% Similarity=0.439 Sum_probs=550.4
Q ss_pred ccccccCCCCCCCCchhhhHHHHHhhc-CCcchHHHhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC
Q 046631 26 QIHSLSPPIPKLKTPTIRSRLSKICQE-GRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTS 104 (813)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 104 (813)
++|..+.+.+..++..+++.++..|.+ |+++.|+++|++|+.||+++||++|.+|++.|++++|+++|++|...| ..
T Consensus 107 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g--~~ 184 (857)
T PLN03077 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG--VR 184 (857)
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CC
Confidence 445555566777888899999999999 999999999999999999999999999999999999999999999999 99
Q ss_pred CCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHc
Q 046631 105 CDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFD 184 (813)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~ 184 (813)
||..||+.++.+|+..+++..+.++|..+.+.|+.||..++|+||.+|+++ |+++.|.++|+
T Consensus 185 Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~------------------g~~~~A~~lf~ 246 (857)
T PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC------------------GDVVSARLVFD 246 (857)
T ss_pred CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC------------------CCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHH
Q 046631 185 TMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLF 264 (813)
Q Consensus 185 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 264 (813)
+|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..+.+.|.. ||..
T Consensus 247 ~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~--~d~~ 324 (857)
T PLN03077 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA--VDVS 324 (857)
T ss_pred cCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc--cchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccC
Q 046631 265 VASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQ 344 (813)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 344 (813)
+||+|+.+|+++|++++|.++|++|..+|+++||++|.+|++.|++++|+++| +.|...|+.||..||+.++.+|++.|
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf-~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY-ALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHH-HHHHHhCCCCCceeHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999 88999999999999999999999999
Q ss_pred cchHHHHHHHHHHH-hcccchhhhhccC--------------------CCCCcchHHHHHHHHHHCCCcHHHHHHHHHHH
Q 046631 345 ELDLGQQLHAYIIK-NFVALPVIVLNAV--------------------IERDVVSWNTMISAFVQNGLDDEGLMLVYEMQ 403 (813)
Q Consensus 345 ~~~~a~~~~~~~~~-~~~~~~~~~~~~~--------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (813)
+++.|.++++.+.+ |+..+ ..+.+++ ..+|.++||++|.+|++.|+.++|+.+|++|.
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~-~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISY-VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999 76554 3333333 67899999999999999999999999999998
Q ss_pred HCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHH
Q 046631 404 KQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWN 482 (813)
Q Consensus 404 ~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 482 (813)
. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++ .++++|+++|+++|++++|.++|+.+ .||.++||
T Consensus 483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n 558 (857)
T PLN03077 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWN 558 (857)
T ss_pred h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHH
Confidence 6 5899999999999999999999999999999999999999 88999999999999999999999988 68999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHhc
Q 046631 483 AMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSI-RYLLDQNVFVGTSLIDMYSKS 561 (813)
Q Consensus 483 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~ 561 (813)
+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|++++++|++.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999998 679999999999999999999
Q ss_pred CCHHHHHHHHhhCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHH
Q 046631 562 GVINYAANVFAKIP-EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA-ITFVAVLSACSYAGLVDEGLQIFDL 639 (813)
Q Consensus 562 g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~ 639 (813)
|++++|.+++++|. +||..+|++|+.+|..+|+.+.+....+++.+ +.|+. ..|..+...|+..|++++|.++.+.
T Consensus 639 G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 99999999999986 78888888888888888888888888888877 45554 4566666788888888888888888
Q ss_pred HHHhcCCCCChh
Q 046631 640 MQQEYKIQPSTE 651 (813)
Q Consensus 640 ~~~~~~~~p~~~ 651 (813)
|.+. |+.+++.
T Consensus 717 M~~~-g~~k~~g 727 (857)
T PLN03077 717 MREN-GLTVDPG 727 (857)
T ss_pred HHHc-CCCCCCC
Confidence 8877 8877643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-77 Score=675.04 Aligned_cols=525 Identities=31% Similarity=0.539 Sum_probs=484.0
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHH
Q 046631 188 RRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMG-IRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVA 266 (813)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 266 (813)
+++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.+++..+.+.|+. ||..++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~--~~~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE--PDQYMM 161 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--cchHHH
Confidence 4577899999999999999999999999998864 7899999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcc
Q 046631 267 SSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQEL 346 (813)
Q Consensus 267 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 346 (813)
|.|+.+|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++| +.|...|
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf-~~M~~~g--------------------- 219 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF-REMWEDG--------------------- 219 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH-HHHHHhC---------------------
Confidence 999999999999999999999998888888888888888888888887777 5555444
Q ss_pred hHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCC
Q 046631 347 DLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRN 426 (813)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 426 (813)
+.||..||+.++.+|+..|.
T Consensus 220 ------------------------------------------------------------~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 220 ------------------------------------------------------------SDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred ------------------------------------------------------------CCCChhhHHHHHHHHhcCCc
Confidence 44444444444444444444
Q ss_pred hHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046631 427 QDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQML 505 (813)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 505 (813)
.+.+.+++..+.+.|..++ .++++|+++|+++|++++|.++|++|. .+|+++||+||.+|++.|++++|+++|++|.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555555555555555555 555778899999999999999999998 7899999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHH
Q 046631 506 EHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTM 585 (813)
Q Consensus 506 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 585 (813)
+.|+.||..||++++.+|++.|+++.|.++|..|.+.|+.||..+|++||++|+++|++++|.++|++|.++|+.+||+|
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~l 397 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGK 665 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 665 (813)
|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 666 VVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 666 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
+++|.+++++|+..|+.. +|++|+.+|+.+|+.+.|+.+++++++++|++ ...|..|+++|++.|+|++|.+++++|
T Consensus 478 ~~eA~~~~~~~~~~p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~--~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 478 LDEAYAMIRRAPFKPTVN-MWAALLTACRIHKNLELGRLAAEKLYGMGPEK--LNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC--CcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999888 99999999999999999999999999999998 889999999999999999999999999
Q ss_pred HHCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCCccCC
Q 046631 746 RERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAGNKTIQ 801 (813)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~c 801 (813)
+++|+++.||+||+++++.+|.|.+||..||+..+++.++.++..+|++.||.|+-
T Consensus 555 ~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 555 KRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999998763
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=587.49 Aligned_cols=536 Identities=15% Similarity=0.165 Sum_probs=486.2
Q ss_pred CCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCC-CCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHH
Q 046631 103 TSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFS-NPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCK 181 (813)
Q Consensus 103 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~ 181 (813)
..++...|..++..|++.|+++.|.++|+.|.+.|+ .++..+++.++..|.+. |.+++|.+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~------------------g~~~eAl~ 427 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ------------------RAVKEAFR 427 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC------------------CCHHHHHH
Confidence 455788899999999999999999999999999985 56778888999999999 99999999
Q ss_pred HHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCC
Q 046631 182 VFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVN 261 (813)
Q Consensus 182 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 261 (813)
+|+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+. |
T Consensus 428 lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~--P 505 (1060)
T PLN03218 428 FAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE--A 505 (1060)
T ss_pred HHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHh--CCCCCChhhHHH
Q 046631 262 DLFVASSAIFMYAELGCFDFARKIFDNCL----ERNTEVWNTMIGGYVQNNHPVEAIELFVQVLEL--DEIVFDDVTFLS 335 (813)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~--~g~~p~~~t~~~ 335 (813)
|..+|+.+|.+|++.|++++|.++|++|. .||..+||.||.+|++.|++++|.++| ..|.. .|+.||..||++
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf-~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL-AEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHhcCCCCCcHHHHHH
Confidence 99999999999999999999999999994 479999999999999999999999999 66654 689999999999
Q ss_pred HHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHH
Q 046631 336 ALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTV 414 (813)
Q Consensus 336 ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 414 (813)
++.+|++.|+++.|.++|+.|.+ + ..|+..+||.+|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~g------------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYN------------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999998 6 5688999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcC--CCCCChhhHHHHHHHHHhC
Q 046631 415 TALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKND--SGDRDQATWNAMIAGYTQN 491 (813)
Q Consensus 415 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~li~~~~~~ 491 (813)
+.++.+|++.|+++.|.++++.|.+.|+.++ .+++.|+.+|+++|++++|.++|++|. +..||..+||.||.+|++.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999 999999999999999999999999984 3479999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046631 492 GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVF 571 (813)
Q Consensus 492 ~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (813)
|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|.+|.+.|+.||..+|++++.+|.+ ++++|.++.
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~ 810 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALG 810 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999976432 355555443
Q ss_pred hhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChh
Q 046631 572 AKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTE 651 (813)
Q Consensus 572 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 651 (813)
+.+. .|+. .......+..+.|+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..
T Consensus 811 ~~v~-----~f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~ 883 (1060)
T PLN03218 811 EPVV-----SFDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQS 883 (1060)
T ss_pred hhhh-----hhhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchh
Confidence 3222 1110 1111122334679999999999999999999999998888888899888888888666 7777899
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhCcCCCh
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKELGEEGNV 682 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 682 (813)
+|++|++++++. .++|..++++|...+-.
T Consensus 884 ~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 884 NLSTLVDGFGEY--DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred hhHHHHHhhccC--hHHHHHHHHHHHHcCCC
Confidence 999999998543 47899999999655533
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-67 Score=590.23 Aligned_cols=476 Identities=25% Similarity=0.407 Sum_probs=411.4
Q ss_pred CCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHh
Q 046631 66 TRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVY 145 (813)
Q Consensus 66 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (813)
..++..+|+.+|.++.+.|++.+|+++|+.|...++ ..||..+|+.++.+|++.++++.|.++|..|.+.|+.||..+|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~-~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCP-FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 346778999999999999999999999999987653 5689999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 046631 146 NSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPS 225 (813)
Q Consensus 146 ~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 225 (813)
+.|+.+|+++ |+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 162 n~Li~~y~k~------------------g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~ 223 (697)
T PLN03081 162 NRVLLMHVKC------------------GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223 (697)
T ss_pred HHHHHHHhcC------------------CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC
Confidence 9999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHH
Q 046631 226 TISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYV 305 (813)
Q Consensus 226 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 305 (813)
..||+.++.+|+..|..+.+.+++..+.+.|.. +|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 224 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~ 301 (697)
T PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV--GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA 301 (697)
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC--ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHH
Confidence 999999999999999999999999999999998 999999999999999999999999999998888888888888888
Q ss_pred hCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHH
Q 046631 306 QNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISA 385 (813)
Q Consensus 306 ~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 385 (813)
+.|++++|+++| +.|...|+.||.. +|+.++.+
T Consensus 302 ~~g~~~eA~~lf-~~M~~~g~~pd~~----------------------------------------------t~~~ll~a 334 (697)
T PLN03081 302 LHGYSEEALCLY-YEMRDSGVSIDQF----------------------------------------------TFSIMIRI 334 (697)
T ss_pred hCCCHHHHHHHH-HHHHHcCCCCCHH----------------------------------------------HHHHHHHH
Confidence 888888888887 6666555444333 33334444
Q ss_pred HHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHH
Q 046631 386 FVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTAR 465 (813)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 465 (813)
|++.|++++|.+++.+|.+.|+.||..+| ++|+++|+++|++++|.
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~----------------------------------~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVAN----------------------------------TALVDLYSKWGRMEDAR 380 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeeh----------------------------------HHHHHHHHHCCCHHHHH
Confidence 44445555555555555556655555555 66888999999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHH-cCC
Q 046631 466 QIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIR-YLL 544 (813)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~ 544 (813)
++|++|. .||+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+
T Consensus 381 ~vf~~m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 381 NVFDRMP--RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHHHhCC--CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 9999998 7999999999999999999999999999999999999999999999999999999999999999986 599
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 046631 545 DQNVFVGTSLIDMYSKSGVINYAANVFAKIP-EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLS 622 (813)
Q Consensus 545 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 622 (813)
.|+..+|++++++|++.|++++|.+++++|. +|+..+|++|+.+|..+|+++.|..+++++.+ +.|+ ..+|..|+.
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~ 536 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLN 536 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHH
Confidence 9999999999999999999999999988876 56777777777777777777777777777654 4443 446667777
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQP 648 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p 648 (813)
.|++.|++++|.++++.|.+. |+.+
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 777777777777777777666 6543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-64 Score=568.54 Aligned_cols=511 Identities=13% Similarity=0.146 Sum_probs=300.7
Q ss_pred CCcchHHHhhhcCCCCCcc-----hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHH
Q 046631 53 GRPHLARQLFDSITRPTTV-----IWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGK 127 (813)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (813)
|++++|.++|++|..++.. .++.++..|.+.|..++|+.+|+.| ..||..+|+.++.+|++.|+++.|.
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M------~~pd~~Tyn~LL~a~~k~g~~e~A~ 457 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI------RNPTLSTFNMLMSVCASSQDIDGAL 457 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc------CCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 5555555555555443332 2334444455555555555555555 2245555555555555555555555
Q ss_pred HHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccC----CCCcccHHHHHHHHHc
Q 046631 128 AVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMR----RRNVVAWNTIVSWYVK 203 (813)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~ 203 (813)
++|+.|.+.|+.||..+|++||.+|+++ |+++.|.++|++|. .||..+||+||.+|++
T Consensus 458 ~lf~~M~~~Gl~pD~~tynsLI~~y~k~------------------G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 458 RVLRLVQEAGLKADCKLYTTLISTCAKS------------------GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhC------------------cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5555555555555555555555555555 55555555555554 3455555555555555
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHH--hCCCCCCcHHHHHHHHHHHHhcCChHH
Q 046631 204 TERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVK--LGSEYVNDLFVASSAIFMYAELGCFDF 281 (813)
Q Consensus 204 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~~ 281 (813)
.|++++|+++|+.|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .++. ||..+|++||.+|+++|++++
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~--PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID--PDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHCCCHHH
Confidence 555555555555555555555555555555555555555555555555544 2333 555555555555555555555
Q ss_pred HHHHHhhcCC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHH
Q 046631 282 ARKIFDNCLE----RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYII 357 (813)
Q Consensus 282 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 357 (813)
|.++|++|.+ ++..+||++|.+|++.|++++|+++| +.|...|+.||..||+.++.+|++.|+++.|.+++..|.
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf-~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY-DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555555533 23455555555555555555555555 555555555555555555555555555555555555554
Q ss_pred H-hcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHH
Q 046631 358 K-NFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAY 436 (813)
Q Consensus 358 ~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 436 (813)
+ | ..||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 677 k~G------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN--------------------- 723 (1060)
T PLN03218 677 KQG------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN--------------------- 723 (1060)
T ss_pred HcC------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH---------------------
Confidence 4 3 23445555555555555555555555555555555555555554
Q ss_pred HHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcC--CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 046631 437 LLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKND--SGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV 514 (813)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 514 (813)
.|+.+|++.|++++|.++|++|. +..||..+|+.+|.+|++.|++++|.++|.+|.+.|+.||..
T Consensus 724 -------------~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 724 -------------ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790 (1060)
T ss_pred -------------HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 45555555555555555555543 226888888888888888899999999999998888889988
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCHhHHHHHHHHHH
Q 046631 515 TIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP----EKNSVTYTTMILGYG 590 (813)
Q Consensus 515 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 590 (813)
+|+.++..|.+ .++++..+.+.+.... ....+...+..+.|..+|++|. .||..+|+.++.+++
T Consensus 791 tynsLIglc~~--~y~ka~~l~~~v~~f~----------~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~ 858 (1060)
T PLN03218 791 MCRCITGLCLR--RFEKACALGEPVVSFD----------SGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQ 858 (1060)
T ss_pred HHHHHHHHHHH--HHHHHhhhhhhhhhhh----------ccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Confidence 88888866542 3444444333222110 0001111223456777777776 367777777777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChh
Q 046631 591 QHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTE 651 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 651 (813)
..+..+.+..++++|...+..|+..+|++++++|.+. .++|..+|++|.+. |+.|+..
T Consensus 859 ~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~-Gi~p~~~ 916 (1060)
T PLN03218 859 LPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL-GVVPSVS 916 (1060)
T ss_pred ccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc-CCCCCcc
Confidence 7777777777777777777777778888888877432 35788888888777 8887753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=363.46 Aligned_cols=670 Identities=10% Similarity=-0.003 Sum_probs=325.8
Q ss_pred CchhhhHHHHHhhc-CCcchHHHhhhcCC---CCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHH
Q 046631 39 TPTIRSRLSKICQE-GRPHLARQLFDSIT---RPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVL 114 (813)
Q Consensus 39 ~~~~~~~l~~~~~~-g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll 114 (813)
+...+..+...+.. |+++.|...|+... +.++.++..++..+...|++++|...++.+.+.. +. +...+....
T Consensus 192 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~~~ 268 (899)
T TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA--PN-SPLAHYLKA 268 (899)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CchHHHHHH
Confidence 34455555666666 99999998888753 3455677778888888899999999988888765 33 333444444
Q ss_pred HHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC---CCc
Q 046631 115 KACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR---RNV 191 (813)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~---~~~ 191 (813)
..+...|+++.|...++.+.+.... +...+..+...+... |+++.|...|+...+ .+.
T Consensus 269 ~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~------------------g~~~~A~~~~~~~~~~~p~~~ 329 (899)
T TIGR02917 269 LVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQL------------------GNLEQAYQYLNQILKYAPNSH 329 (899)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHc------------------CCHHHHHHHHHHHHHhCCCCh
Confidence 4556778888888888887776422 122233334445555 555555555554432 123
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 046631 192 VAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIF 271 (813)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 271 (813)
..+..+...+.+.|++++|+..++.+.+.. +.+...+..+...+...|++++|.++++.+.+..+. +...+..+..
T Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~ 405 (899)
T TIGR02917 330 QARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE---NAAARTQLGI 405 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Confidence 344444455555555555555555554432 223334444555555555555555555555544422 3344444555
Q ss_pred HHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchH
Q 046631 272 MYAELGCFDFARKIFDNCLER---NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDL 348 (813)
Q Consensus 272 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 348 (813)
.+...|+.++|.+.|+.+... +...+..++..+.+.|++++|+.++ +.+.. ..+.+..++..+...+...|+.+.
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA-KKLEK-KQPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH-HHHHH-hCCCCcHHHHHHHHHHHhCCCHHH
Confidence 555555555555555544321 2233344444555555555555555 22221 122333444445555555555555
Q ss_pred HHHHHHHHHHhcccchhhhh----------------------ccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCC
Q 046631 349 GQQLHAYIIKNFVALPVIVL----------------------NAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQG 406 (813)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 406 (813)
|.+.+..+.+..+..+.... -...+.+..++..+...+.+.|+.++|..+++++.+.+
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55555544431000000000 00001223344444444444444444444444444332
Q ss_pred CCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHH
Q 046631 407 FMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMI 485 (813)
Q Consensus 407 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 485 (813)
+.+...+..+...+...|+++.|..+++.+.+..+.....+..+...|.+.|++++|...|+.+....| +...+..+.
T Consensus 564 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 642 (899)
T TIGR02917 564 -PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA 642 (899)
T ss_pred -ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 222333344444444445555555444444443333234444444444455555555555444432223 333444444
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 046631 486 AGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVIN 565 (813)
Q Consensus 486 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 565 (813)
..|.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.. +.+...+..+...|.+.|+++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHH
Confidence 44444555555555554444421 1223344444444444455555555544444433 223334444444445555555
Q ss_pred HHHHHHhhCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046631 566 YAANVFAKIP--EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 566 ~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 643 (813)
+|.+.|+.+. .|+..++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|.++|+++.+.
T Consensus 721 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 721 AAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 5555554443 2333444444444555555555555555544431 223334444444444555555555555554432
Q ss_pred cCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh
Q 046631 644 YKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 644 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
.| +..++..++.++.+.|+ ++|+++++++ ...|+.+.++..++..+...|++++|...++++++.+|.+ +..
T Consensus 800 ---~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~ 873 (899)
T TIGR02917 800 ---APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA--AAI 873 (899)
T ss_pred ---CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHH
Confidence 22 24444455555555555 4455554443 2233333344445555555555555555555555555544 455
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 722 HVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
+..++.+|.+.|++++|.+++++|.
T Consensus 874 ~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 874 RYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555555555555555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=356.61 Aligned_cols=659 Identities=13% Similarity=0.041 Sum_probs=461.0
Q ss_pred hhhhHHHHHhhc-CCcchHHHhhhcCC---CCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHH
Q 046631 41 TIRSRLSKICQE-GRPHLARQLFDSIT---RPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKA 116 (813)
Q Consensus 41 ~~~~~l~~~~~~-g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~ 116 (813)
..+..+...+.. |++++|...++.+. +.+...|..+...+...|++++|...|++..+.+ +. +..++..+...
T Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~-~~~~~~~~~~~ 236 (899)
T TIGR02917 160 YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR--PN-NPAVLLALATI 236 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHH
Confidence 344555566666 99999999998763 3456678888889999999999999999998876 43 67788889999
Q ss_pred hhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCC---ccc
Q 046631 117 CAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRN---VVA 193 (813)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~---~~~ 193 (813)
+...|+++.|...++.+.+.... +..........+... |++++|.+.|+.+.+.+ ...
T Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------~~~~~A~~~~~~~l~~~~~~~~~ 297 (899)
T TIGR02917 237 LIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQK------------------KNYEDARETLQDALKSAPEYLPA 297 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHh------------------cCHHHHHHHHHHHHHhCCCchhH
Confidence 99999999999999999887533 223333333334455 99999999999876533 234
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 046631 194 WNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMY 273 (813)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 273 (813)
+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+..+.+..+. +...+..+...|
T Consensus 298 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~ 373 (899)
T TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD---DPAALSLLGEAY 373 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHH
Confidence 4555667888999999999999998753 234556777788889999999999999999887753 778889999999
Q ss_pred HhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHH
Q 046631 274 AELGCFDFARKIFDNCLE---RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQ 350 (813)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 350 (813)
.+.|++++|.+.|+++.+ .+...|..+...+...|++++|++.|.+.+.... ........++..+.+.|+.+.|.
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 451 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP--ELGRADLLLILSYLRSGQFDKAL 451 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC--cchhhHHHHHHHHHhcCCHHHHH
Confidence 999999999999998754 2566788889999999999999999955554332 12334556778889999999999
Q ss_pred HHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHH
Q 046631 351 QLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVG 430 (813)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 430 (813)
.++..+.+..+ .+..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++.|
T Consensus 452 ~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 452 AAAKKLEKKQP------------DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHHHHHHHhCC------------CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999887422 234455556666666666666666666555432 12223334444444555555555
Q ss_pred HHHHHHHHHhCCCCc----------------------------------chHHHHHHHHHhcCCHHHHHHHHhhcCCCCC
Q 046631 431 KQTHAYLLRHGIHFE----------------------------------GMESYLIDMYAKSGLIKTARQIFEKNDSGDR 476 (813)
Q Consensus 431 ~~~~~~~~~~~~~~~----------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 476 (813)
...++.+.+..+... .....++..|.+.|++++|..+++.+....|
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 555555544443322 3344455555555555555555555443333
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046631 477 -DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 477 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 555 (813)
+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..++
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44455555566666666666666666555432 2233445555555555666666666666555432 22345556666
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 046631 556 DMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDE 632 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 632 (813)
..+...|++++|.++++.+.+ .+...+..+...+...|++++|+..|+++... .|+..++..+..++.+.|++++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHH
Confidence 666666666666666666542 24556666677777777777777777777763 4555666667777777888888
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 046631 633 GLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLL 710 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 710 (813)
|.+.++.+.+. .| +...+..++.+|.+.|++++|.+.++++ ...|+.+.+++.+++.+...|+ .+|+..+++++
T Consensus 755 A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 755 AVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 88877777754 34 4777888888888888888888888876 3445555578888888888888 77888888888
Q ss_pred cCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 711 EMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 711 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
+..|++ +..+..++.+|...|++++|.++++++.+.++
T Consensus 831 ~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 831 KLAPNI--PAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hhCCCC--cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888887 78888888888888888888888888886553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-26 Score=270.05 Aligned_cols=628 Identities=12% Similarity=0.026 Sum_probs=424.3
Q ss_pred HHHhhc-CCcchHHHhhhcCC---CCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCccc-------------
Q 046631 47 SKICQE-GRPHLARQLFDSIT---RPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYT------------- 109 (813)
Q Consensus 47 ~~~~~~-g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------- 109 (813)
.+++.. ++.+.|.+.++++. ..|+..+..++..+.+.|+.++|...++++.+.. |. +...
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~-~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PD-SNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CC-ChHHHHHHHHHHhcCCc
Confidence 344444 99999999998764 3567788889999999999999999999999876 32 2222
Q ss_pred ---HHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHH-HHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcc
Q 046631 110 ---YSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLL-NMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDT 185 (813)
Q Consensus 110 ---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~ 185 (813)
...+...+...|++++|.+.++.+.+.. +++........ ...... |+.++|++.+++
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~------------------g~~~~A~~~L~~ 172 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLP------------------AQRPEAINQLQR 172 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCC------------------ccHHHHHHHHHH
Confidence 2333456788999999999999998764 23322111111 111223 899999999999
Q ss_pred cCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhh--------------------HHHHHHHhhCCCCh
Q 046631 186 MRR--R-NVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTIS--------------------FVNVFPALSSLGDY 242 (813)
Q Consensus 186 ~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--------------------~~~ll~~~~~~g~~ 242 (813)
+.+ | +...+..+...+...|+.++|++.|+++...... +... +...+..+-.....
T Consensus 173 ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~ 251 (1157)
T PRK11447 173 LNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSV 251 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHH
Confidence 875 3 4457788888899999999999999998763210 0000 11111111111122
Q ss_pred hHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHH
Q 046631 243 KSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE--R-NTEVWNTMIGGYVQNNHPVEAIELFVQ 319 (813)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 319 (813)
..|...+....+.... |+.. ...+...+...|++++|+..|++..+ | +...+..+...|.+.|++++|+..|++
T Consensus 252 ~~A~~~L~~~~~~~~d--p~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~ 328 (1157)
T PRK11447 252 AAARSQLAEQQKQLAD--PAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEK 328 (1157)
T ss_pred HHHHHHHHHHHHhccC--cchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2333333333222211 2211 11223445556666666666665533 2 445555666666666666666666644
Q ss_pred HHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHH
Q 046631 320 VLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLV 399 (813)
Q Consensus 320 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 399 (813)
.+....-.+....+..++.. ............+.+.|++++|...|
T Consensus 329 Al~~~p~~~~~~~~~~ll~~----------------------------------~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 329 ALALDPHSSNRDKWESLLKV----------------------------------NRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHHhCCCccchhHHHHHHHh----------------------------------hhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44332211111111111000 00000112234567788888888888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCC--
Q 046631 400 YEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRD-- 477 (813)
Q Consensus 400 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 477 (813)
++..+.. +.+...+..+...+...|++++|.+.++.+++..+........+...|. .++.++|...++.+....+.
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 8888763 2344556667777888888888888888888877665555556666664 45778888888776532221
Q ss_pred --------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCch
Q 046631 478 --------QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPN-VVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNV 548 (813)
Q Consensus 478 --------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 548 (813)
...+..+...+...|++++|++.|++.++. .|+ ...+..+...+...|+.++|...++.+.+.. +.+.
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~ 529 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDP 529 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH
Confidence 123555677788899999999999998875 454 4566677888889999999999999887643 2244
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CH---------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPEK----NS---------VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI 615 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 615 (813)
..+..+...+...|+.++|...++.+... +. ..+..+...+...|+.++|+.+++. .+.+..
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~ 604 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTR 604 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCch
Confidence 44555556677889999999999987632 11 1223456778899999999999882 344556
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLLGSC 693 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~ 693 (813)
.+..+...+...|++++|+..|+++.+. .|+ ...+..++.+|...|++++|++.++.+. ..|+.+.++..+..++
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW 681 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 7778888999999999999999999854 675 8899999999999999999999999874 4556666888899999
Q ss_pred HHhCCHHHHHHHHHHHhcCCCCCCC----chhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 694 RLHGHSELAEVVAKKLLEMDTRNSM----PGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 694 ~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
...|++++|...+++++...|++.. +..+..++.++...|++++|...+++...
T Consensus 682 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999998766410 13555679999999999999999998864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-25 Score=261.46 Aligned_cols=609 Identities=9% Similarity=-0.028 Sum_probs=420.5
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcC
Q 046631 76 IIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTC 155 (813)
Q Consensus 76 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 155 (813)
.++.....++.+.|.+.++++.... |. +...+..++..+.+.|+.++|.+.++++.+.. |+...+..+...+...
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~--p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID--PN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 5667778889999999999998876 44 67788888899999999999999999998875 3322221111111000
Q ss_pred CCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHH
Q 046631 156 LSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI-SFVNVFP 234 (813)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 234 (813)
.++....-.....+.+.|++++|++.|+.+.+.+ +|+.. .......
T Consensus 109 --------------------------------~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~ 155 (1157)
T PRK11447 109 --------------------------------TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRL 155 (1157)
T ss_pred --------------------------------CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHH
Confidence 0111122333344555566666666666655432 22211 1111111
Q ss_pred HhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCC---------------------
Q 046631 235 ALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERN--------------------- 293 (813)
Q Consensus 235 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------------- 293 (813)
.....|+.++|...++.+.+..+. +...+..+...+...|+.++|+..++++....
T Consensus 156 ~~~~~g~~~~A~~~L~~ll~~~P~---~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~ 232 (1157)
T PRK11447 156 VAKLPAQRPEAINQLQRLNADYPG---NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSD 232 (1157)
T ss_pred HhhCCccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCCh
Confidence 122345666666666666665543 44455566666666666666666666553221
Q ss_pred --cchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccC
Q 046631 294 --TEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAV 371 (813)
Q Consensus 294 --~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (813)
...+...+..+-.......|...+ .........|+... ...-..+...|++++|...++.+.+..
T Consensus 233 ~~~~~l~~~l~~~p~~~~~~~A~~~L-~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~----------- 299 (1157)
T PRK11447 233 ASVAALQKYLQVFSDGDSVAAARSQL-AEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN----------- 299 (1157)
T ss_pred hhHHHHHHHHHHCCCchHHHHHHHHH-HHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-----------
Confidence 111111222222222233444444 22222222232221 122345567889999999998888721
Q ss_pred CCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCC-CHhHH------------HHHHHHHhcCCChHHHHHHHHHHH
Q 046631 372 IERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMI-DSVTV------------TALLSAASNLRNQDVGKQTHAYLL 438 (813)
Q Consensus 372 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~------------~~ll~~~~~~~~~~~a~~~~~~~~ 438 (813)
+.+...+..+...|.+.|++++|+..|++..+..... ....+ ......+.+.|++++|...++.++
T Consensus 300 -P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 300 -PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2356788899999999999999999999988764221 11111 122345678999999999999999
Q ss_pred HhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-------
Q 046631 439 RHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVT------- 510 (813)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~------- 510 (813)
+..+........+...|...|++++|++.|++.....| +...+..+...|. .++.++|+.+++.+......
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99876667777899999999999999999999876667 4556777777775 46789999988765432100
Q ss_pred -CCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHH
Q 046631 511 -PNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTMI 586 (813)
Q Consensus 511 -p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 586 (813)
.....+..+...+...|++++|...++...+... -+..++..+...|.+.|++++|...|+++.+ | +...+..+.
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~a 536 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYG 536 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 0112344566677889999999999999988642 2566788899999999999999999998752 3 566666666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 046631 587 LGYGQHGMSERALSLFRSMKGCGIEPDAI---------TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVA 657 (813)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 657 (813)
..+...++.++|+..++++......++.. .+..+...+...|+.++|..+++. ..++...+..+.
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La 610 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLA 610 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHH
Confidence 67788999999999998865432222221 233456678899999999998861 123577788899
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcH
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWE 736 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~ 736 (813)
..+.+.|++++|++.++++ ...|+.+.++..++..+...|++++|+..++++++..|++ +..+..++.++...|+++
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~--~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS--LNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC--hHHHHHHHHHHHhCCCHH
Confidence 9999999999999999987 5578777899999999999999999999999999999998 888899999999999999
Q ss_pred HHHHHHHHHHHCC
Q 046631 737 NVDKVRKEMRERG 749 (813)
Q Consensus 737 ~A~~~~~~m~~~~ 749 (813)
+|.++++++.+..
T Consensus 689 eA~~~~~~al~~~ 701 (1157)
T PRK11447 689 AAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHhhhC
Confidence 9999999998654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-23 Score=233.03 Aligned_cols=628 Identities=11% Similarity=-0.013 Sum_probs=387.0
Q ss_pred CCcchHHHhhhcCCC---CCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHH
Q 046631 53 GRPHLARQLFDSITR---PTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAV 129 (813)
Q Consensus 53 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 129 (813)
|++++|...|+.... .++.++..+.+.|.+.|+.++|...+++..+.. | +...|..++..+ ++.+.|..+
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P--~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--P--GDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--c--ccHHHHHHHHHh---ccChhHHHH
Confidence 666666666665432 234455666666666677777777776666654 2 222233323222 666666666
Q ss_pred HHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccC--CCC--cccHHHH-HHHHHcC
Q 046631 130 HCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMR--RRN--VVAWNTI-VSWYVKT 204 (813)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~--~~~--~~~~~~l-i~~~~~~ 204 (813)
++++.+.. +.+..++..+....+-. ..+.+.+.+.|.+.++ .. .++ ..+.... ...|.+.
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~-------------~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQ-------------NALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhcc-------------chhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 66666653 22233333333320000 0000045555555555 22 122 2222333 5666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhC-CCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHH
Q 046631 205 ERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSS-LGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFAR 283 (813)
Q Consensus 205 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 283 (813)
|++++|++++.++.+.+.. +..-...+-.++.. .++ +.+..+++. ... .+..+...++..|.+.|+.++|.
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk--~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIF--TDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred hCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcc--cCHHHHHHHHHHHHHCCCHHHHH
Confidence 6666677777666665421 22223344444444 244 445444332 222 35666666666666666666666
Q ss_pred HHHhhcCC-----CCcchHHHHHHHHHhCCCch-HHHHHHHHHHHhCCCCCChh-hHHHHHHHhcccCcchHHHHHHHHH
Q 046631 284 KIFDNCLE-----RNTEVWNTMIGGYVQNNHPV-EAIELFVQVLELDEIVFDDV-TFLSALSAVSQLQELDLGQQLHAYI 356 (813)
Q Consensus 284 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~~-~A~~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~ 356 (813)
++++++.. +...+|--+ +.+.+... .|..-|.+. ..++.. ....++..+.+.++++.++++..
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 337 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTVQ-----FADNRQYVVGATLPVLLKEGQYDAAQKLLA-- 337 (987)
T ss_pred HHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhhh-----hHHHHHHHHHHHHHHHHhccHHHHHHHHhc--
Confidence 66666533 122233222 22222221 111111011 111111 11123455566666665554422
Q ss_pred HHhcccchhhhhccCCCCCcchHHHHHHHH--HHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHH
Q 046631 357 IKNFVALPVIVLNAVIERDVVSWNTMISAF--VQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTH 434 (813)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 434 (813)
..|.... ..+... ...+...++...+..|.+.. .-+....--+--.....|+.++|..++
T Consensus 338 ---------------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 338 ---------------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred ---------------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 1122222 122222 23355666666666666541 113333333333455778888888888
Q ss_pred HHHHHhCC--CCc-chHHHHHHHHHhcCC---HHHHHHH-------------------------HhhcCCCC-C--Chhh
Q 046631 435 AYLLRHGI--HFE-GMESYLIDMYAKSGL---IKTARQI-------------------------FEKNDSGD-R--DQAT 480 (813)
Q Consensus 435 ~~~~~~~~--~~~-~~~~~l~~~~~~~g~---~~~A~~~-------------------------~~~~~~~~-~--~~~~ 480 (813)
........ ..+ .+..-++..|.+.+. ..++..+ +....... + +...
T Consensus 400 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a 479 (987)
T PRK09782 400 LQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA 479 (987)
T ss_pred HHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH
Confidence 87776311 112 455567777777765 2233222 22222222 2 4567
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046631 481 WNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK 560 (813)
Q Consensus 481 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 560 (813)
|..+..++.. +++++|+..|.+.... .|+......+...+...|+.++|...++.+... .|+...+..+...+.+
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 7888877776 8999999988888765 477655545556667899999999999987654 3344456677788899
Q ss_pred cCCHHHHHHHHhhCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046631 561 SGVINYAANVFAKIPEKNSV---TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 637 (813)
.|++++|...|+...+.++. .+..+...+...|++++|+..+++..+ ..|+...+..+..++.+.|+.++|...+
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988753332 233333344456999999999999998 5678888999999999999999999999
Q ss_pred HHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 638 DLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 638 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
++.. .+.|+ ...+..++..+...|++++|++.+++. ...|+.+.++..+..++...|++++|+..++++++++|+
T Consensus 633 ~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 633 RAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9998 45786 888999999999999999999999986 567888889999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 716 NSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 716 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
+ +......+++.....+++.|.+.++....-++
T Consensus 710 ~--a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 710 Q--ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred C--chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 8 89999999999999999999998887765443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-20 Score=213.58 Aligned_cols=610 Identities=9% Similarity=-0.035 Sum_probs=435.9
Q ss_pred hHHHHHHHH--hcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHH
Q 046631 72 IWNTIIIGF--VCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLL 149 (813)
Q Consensus 72 ~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (813)
++-.++.+. ...|++++|+..|++..+.. |. +..++..|..++...|+.++|...+++..+.. |+...+..++
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~L 118 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV--PD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSL 118 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH
Confidence 333444443 33499999999999999987 55 58889999999999999999999999998874 4444444433
Q ss_pred HHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC--CC-cccHHHHHHH--------HHcCCChhHHHHHHHHHH
Q 046631 150 NMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR--RN-VVAWNTIVSW--------YVKTERYVEAVRQFRMML 218 (813)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~--------~~~~g~~~~A~~l~~~m~ 218 (813)
.. . ++.++|..+++++.. |+ ...+..+... |.+. ++|.+.++ ..
T Consensus 119 a~---i------------------~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr 173 (987)
T PRK09782 119 AA---I------------------PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DA 173 (987)
T ss_pred HH---h------------------ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hh
Confidence 33 3 778889999999874 43 3444444444 5555 55555555 44
Q ss_pred HCCCCCCHhhHHHH-HHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHh-cCChHHHHHHHhhcCCCCcch
Q 046631 219 RMGIRPSTISFVNV-FPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAE-LGCFDFARKIFDNCLERNTEV 296 (813)
Q Consensus 219 ~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~ 296 (813)
.....|+....... .+.+...+++++|..++..+.+.++. +......|..+|.. .++ +.+..+++...+.+...
T Consensus 174 ~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl---~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l 249 (987)
T PRK09782 174 TFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL---SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQS 249 (987)
T ss_pred hhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHH
Confidence 43344445544554 88999999999999999999999865 56667777778888 477 99999987655668889
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhCCC-CCChhhHHHHHHHhcccCcchHHHHHHH-HHHHhcccchhhhhccCCCC
Q 046631 297 WNTMIGGYVQNNHPVEAIELFVQVLELDEI-VFDDVTFLSALSAVSQLQELDLGQQLHA-YIIKNFVALPVIVLNAVIER 374 (813)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~ 374 (813)
+..+...|.+.|+.++|..++ +.+...-. .|+..++...+.-+.... ..+..-+. .....
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L-~~~~~~~~~~~~~~~~~~~l~r~~~~~--~~~~~~~~~~~~~~--------------- 311 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYL-IENKPLFTTDAQEKSWLYLLSKYSANP--VQALANYTVQFADN--------------- 311 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHH-HhCcccccCCCccHHHHHHHHhccCch--hhhccchhhhhHHH---------------
Confidence 999999999999999999999 65544322 355655555543332221 11111000 00000
Q ss_pred CcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 046631 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDM 454 (813)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 454 (813)
-....-.++..+.+.++++.+.++.. +.|.......-..+....+...++...+..+.+..+........+.-.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~ 385 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ 385 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 00112234778889999996665522 345444322212223344677788888888887766555555566667
Q ss_pred HHhcCCHHHHHHHHhhcCCCCC----ChhhHHHHHHHHHhCCC---hHHHHHH----------------------HHHHH
Q 046631 455 YAKSGLIKTARQIFEKNDSGDR----DQATWNAMIAGYTQNGL---LEEAFVA----------------------FRQML 505 (813)
Q Consensus 455 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~---~~~A~~~----------------------~~~m~ 505 (813)
..+.|+.++|.++|+..-...+ +....+-++..|.+.+. ..+++.+ +....
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 7899999999999998664322 34455577888877766 3444333 11111
Q ss_pred H-CCCCC---CHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCH
Q 046631 506 E-HNVTP---NVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--KNS 579 (813)
Q Consensus 506 ~-~~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 579 (813)
. .+..| +...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++.
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~ 542 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN 542 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc
Confidence 1 11223 34455555555555 78888999777766553 4444344445555789999999999998763 455
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVAD 658 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 658 (813)
..+..+...+.+.|+.++|...+++.++.. |+.. .+..+.......|++++|...+++.. .+.|+...+..++.
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~ 617 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARAT 617 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHH
Confidence 567778888999999999999999999854 4443 33344445566799999999999998 45788889999999
Q ss_pred HHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHH
Q 046631 659 MLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWEN 737 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 737 (813)
++.+.|++++|+..+++. ...|+.+..++.+..++...|+.++|+..++++++.+|++ +..+..++.+|...|++++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~--~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD--PALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHH
Confidence 999999999999999987 6678888899999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHCC
Q 046631 738 VDKVRKEMRERG 749 (813)
Q Consensus 738 A~~~~~~m~~~~ 749 (813)
|+..+++..+..
T Consensus 696 A~~~l~~Al~l~ 707 (987)
T PRK09782 696 TQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHhcC
Confidence 999999998654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-22 Score=198.48 Aligned_cols=359 Identities=14% Similarity=0.128 Sum_probs=299.3
Q ss_pred CcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHH
Q 046631 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTAL-LSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLID 453 (813)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 453 (813)
.+..|..+..++...|+.+.|.+.|.+.++. .|+.+...+- .......|++.+|...|.+.++..+....+++.|..
T Consensus 149 fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~ 226 (966)
T KOG4626|consen 149 FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGC 226 (966)
T ss_pred hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcch
Confidence 4556777777778888888888877777663 5666544433 333445688888888888888887766677888888
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCChHH
Q 046631 454 MYAKSGLIKTARQIFEKNDSGDRD-QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNV-VTIASVLPACNPMGNIEL 531 (813)
Q Consensus 454 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~ 531 (813)
.+-..|++..|+..|++....+|+ ...|-.|...|...+.+++|+..|.+.... .|+. ..+..+...|...|.++.
T Consensus 227 ~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred HHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHH
Confidence 999999999999999998887885 457888999999999999999999888764 5654 567777778889999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTMILGYGQHGMSERALSLFRSMKGC 608 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 608 (813)
|+..+++.+.... .=...|+.|..++...|++.+|.+.+.+... | ...+.+.|...|...|.+++|..+|....+
T Consensus 305 AI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~- 382 (966)
T KOG4626|consen 305 AIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE- 382 (966)
T ss_pred HHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh-
Confidence 9999998887531 1245799999999999999999999998773 3 577899999999999999999999999998
Q ss_pred CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHH
Q 046631 609 GIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEI 685 (813)
Q Consensus 609 g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 685 (813)
+.|.-. .++.|...|.+.|++++|+..+++.. .|.|+ ...|+.++..|-..|+.+.|++.+.+. ..+|.-.+.
T Consensus 383 -v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA 458 (966)
T KOG4626|consen 383 -VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA 458 (966)
T ss_pred -hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH
Confidence 777654 78999999999999999999999988 78998 899999999999999999999998886 677888889
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
++.|...+...|+..+|+..++.++.+.|+. +..|-.+..++.--.+|.+-.+.++++
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLklkPDf--pdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALKLKPDF--PDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHccCCCC--chhhhHHHHHHHHHhcccchHHHHHHH
Confidence 9999999999999999999999999999998 999888888877777777644443333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-22 Score=196.19 Aligned_cols=365 Identities=12% Similarity=0.135 Sum_probs=319.3
Q ss_pred CcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHH
Q 046631 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMI-DSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLID 453 (813)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 453 (813)
-..+|..+.+.+-..|++++|+.+++.|.+. +| ....|..+..++...|+.+.|.+.+...++.++..-.+.+.+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 3578999999999999999999999999986 45 45688899999999999999999999999988877677777888
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCChHH
Q 046631 454 MYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNV-VTIASVLPACNPMGNIEL 531 (813)
Q Consensus 454 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~ 531 (813)
.....|++.+|...+.+....+| -.+.|+.|...+-..|+...|+..|++..+ +.|+. ..|..|-..+...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 88889999999999998776677 456899999999999999999999999987 45654 467777777888888888
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--KN-SVTYTTMILGYGQHGMSERALSLFRSMKGC 608 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 608 (813)
|...+....... +....++..+...|..+|.++-|+..+++..+ |+ ..+|+.|..++...|++.+|.+.|.+...
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~- 348 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR- 348 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-
Confidence 888777665542 22456677788889999999999999999873 44 67999999999999999999999999998
Q ss_pred CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHH
Q 046631 609 GIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEI 685 (813)
Q Consensus 609 g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 685 (813)
+.|+. ...+.|...+...|++++|..+|.... .+.|. ....+.|...|..+|++++|+.-+++. ...|...++
T Consensus 349 -l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 -LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred -hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 56665 488899999999999999999999887 56787 888999999999999999999999886 788999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCc
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 751 (813)
++.++..|...|+...|.+.+.+++..+|.- +..+..|+.+|...|+..+|+.-+++..+..+.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~--AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTF--AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHH--HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999988 999999999999999999999999999876543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-16 Score=169.50 Aligned_cols=544 Identities=12% Similarity=0.096 Sum_probs=383.5
Q ss_pred hhHHHHHHcccCCCCccc-HHHHHHH--HHcCCChhHHHHHHHHHHHC--CCCCCHhhHHHHHHHhhCCCChhHHHHHHH
Q 046631 176 YDLVCKVFDTMRRRNVVA-WNTIVSW--YVKTERYVEAVRQFRMMLRM--GIRPSTISFVNVFPALSSLGDYKSADVVYG 250 (813)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~-~~~li~~--~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 250 (813)
++.|...|..+.+....- ...+..+ ....+++..|+.+|...... ...||... .+-.++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 688888888877532221 2222333 33568999999999996553 34455432 23345578899999999999
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHhc---CChHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhC
Q 046631 251 LLVKLGSEYVNDLFVASSAIFMYAEL---GCFDFARKIFDNCL---ERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELD 324 (813)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~ 324 (813)
.+++..+. ++..+-.|...-... ..+..+..++...- ..|++..+.|...|.-.|++..++.+...+....
T Consensus 224 ralqLdp~---~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 224 RALQLDPT---CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHhcChh---hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 99987742 333333333222222 33555555555442 2488899999999999999999999985544433
Q ss_pred CCCC-ChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCC--cchHHHHHHHHHHCCCcHHHHHHHHH
Q 046631 325 EIVF-DDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERD--VVSWNTMISAFVQNGLDDEGLMLVYE 401 (813)
Q Consensus 325 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (813)
-..+ -...|-.+-+++-..|+++.|.+.+-...+. .+| +..+--+...|.+.|+.+.+...|+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-------------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-------------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-------------CCCCccccccchhHHHHHhchHHHHHHHHHH
Confidence 2221 2234667778888999999999998888771 122 23345578889999999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCC------HHHHHHHHhhc
Q 046631 402 MQKQGFMIDSVTVTALLSAASNLR----NQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGL------IKTARQIFEKN 471 (813)
Q Consensus 402 m~~~g~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~ 471 (813)
.... .+-+..|...|...|+..+ ..+.|..+.....+..+.....+-.+..+|....- +..|..++...
T Consensus 368 v~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 368 VLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESK 446 (1018)
T ss_pred HHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHc
Confidence 8876 2333455555555555553 45777777777777775555666667766665543 33444444443
Q ss_pred CCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHhccCCChHHHHHHHHHHHHc
Q 046631 472 DSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEH---NVTPNV------VTIASVLPACNPMGNIELGKQLHGFSIRY 542 (813)
Q Consensus 472 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 542 (813)
.. .+.....|.+...+...|.+.+|...|...... ...+|. .+--.+....-..++.+.|...+..+.+.
T Consensus 447 ~~-~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 447 GK-QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred CC-CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 32 256778899999999999999999999988765 223333 22334455556778999999999988876
Q ss_pred CCCCchhHHHHHHHHHHhc-------CCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CC
Q 046631 543 LLDQNVFVGTSLIDMYSKS-------GVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCG-IE 611 (813)
Q Consensus 543 ~~~~~~~~~~~li~~~~~~-------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 611 (813)
. -..|++|.+. +...+|...+..+. ..|+..|+-+...+.....+..|.+-|+...+.- ..
T Consensus 526 h--------p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 526 H--------PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred C--------chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 3 2234444443 67788988888876 4578888888889999999988888777666532 23
Q ss_pred CCHHHHHHHHHHHhc------------cCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCc
Q 046631 612 PDAITFVAVLSACSY------------AGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGE 678 (813)
Q Consensus 612 p~~~~~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 678 (813)
+|..+...|...|.. .+..+.|+++|.+.++ ..| +..+-+-++-+++..|++.+|..+|.+..+
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 676666666665532 2346778888888874 466 688889999999999999999999999866
Q ss_pred CCC-hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 679 EGN-VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 679 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
... ..++|-.+..+|...|++..|+++|+..+...-..+.+.....|+.++.+.|+|.+|.+.........+
T Consensus 675 a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 675 ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 543 455999999999999999999999999987654333378888999999999999999999888876543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=192.15 Aligned_cols=293 Identities=14% Similarity=0.137 Sum_probs=191.8
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhccCCCh
Q 046631 454 MYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPN---VVTIASVLPACNPMGNI 529 (813)
Q Consensus 454 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~ 529 (813)
.+...|++++|...|+++....| +..++..+...|...|++++|..+++.+......++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34556677777777777665555 344667777777777777777777777766432221 13445555666666666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--C------HhHHHHHHHHHHhcCChHHHHHH
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK--N------SVTYTTMILGYGQHGMSERALSL 601 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~ 601 (813)
+.|..+++.+.+.. +.+..+++.++..|.+.|++++|.+.++.+.+. + ...|..+...+...|++++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666665532 234556666777777777777777777666421 1 12345566677777888888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHhC-
Q 046631 602 FRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYEFVKELG- 677 (813)
Q Consensus 602 ~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 677 (813)
|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|.+.|++++|.+.++++.
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8887764 333 446666777777888888888888877744 343 4566777788888888888888877763
Q ss_pred cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh--cCCcHHHHHHHHHHHHCCCccCCc
Q 046631 678 EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE--EGNWENVDKVRKEMRERGLRKEVG 755 (813)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~ 755 (813)
..|+.. .+..++..+.+.|++++|...++++++..|++ .....++...+.. .|+.+++..++++|.+++++++|.
T Consensus 278 ~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~--~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSL--RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH--HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 345444 55777777888888888888888888887776 4443333322222 457788888888888777777664
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-16 Score=166.91 Aligned_cols=577 Identities=12% Similarity=0.091 Sum_probs=404.1
Q ss_pred chHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC------CCcccHHH
Q 046631 123 LRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR------RNVVAWNT 196 (813)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~ 196 (813)
++.|.+.|..+.+.....-......---.|.+ +++-.|..+|..... +|+.. .
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynk-------------------kdY~~al~yyk~al~inp~~~aD~rI--g 204 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNK-------------------KDYRGALKYYKKALRINPACKADVRI--G 204 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhcc-------------------ccHHHHHHHHHHHHhcCcccCCCccc--h
Confidence 58888888888877532222222222222333 899999999998442 23321 2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHh----hCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 046631 197 IVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPAL----SSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFM 272 (813)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 272 (813)
+-..+.+.|+.+.|+..|.+..+ +.|+.+.-...+.-+ .....+..+.+.+...-+.... |+.+.+.|.+.
T Consensus 205 ig~Cf~kl~~~~~a~~a~~ralq--Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~---nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 205 IGHCFWKLGMSEKALLAFERALQ--LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE---NPVALNHLANH 279 (1018)
T ss_pred hhhHHHhccchhhHHHHHHHHHh--cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC---CcHHHHHHHHH
Confidence 22455688999999999999988 456444222222211 2334566777777777776654 88899999999
Q ss_pred HHhcCChHHHHHHHhhcCCCC------cchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhh--HHHHHHHhcccC
Q 046631 273 YAELGCFDFARKIFDNCLERN------TEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVT--FLSALSAVSQLQ 344 (813)
Q Consensus 273 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 344 (813)
|.-.|+++.+..+...+...+ ..+|.-+.++|-..|++++|...| |...+..++.++ +..+...+.+.|
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY---~~s~k~~~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY---MESLKADNDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH---HHHHccCCCCccccccchhHHHHHhc
Confidence 999999999999988776542 345788999999999999999999 444445566544 456778889999
Q ss_pred cchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCC----CcHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 046631 345 ELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNG----LDDEGLMLVYEMQKQGFMIDSVTVTALLSA 420 (813)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 420 (813)
+++.+...|+.+.+.. +.+..+-.+|...|...+ ..+.|..++.+..+.- .-|...|..+-..
T Consensus 357 dle~s~~~fEkv~k~~------------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQL------------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred hHHHHHHHHHHHHHhC------------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 9999999999998832 223455666666666654 4567777777766653 4566677666555
Q ss_pred HhcCCChHHHHHHHHHHH----HhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CCCh------hhHHHH
Q 046631 421 ASNLRNQDVGKQTHAYLL----RHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSG-----DRDQ------ATWNAM 484 (813)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~------~~~~~l 484 (813)
+-...-+ ....++..+. ..+..+. .+.|.+...+...|++.+|...|++..+. +++. .+--.+
T Consensus 424 ~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 5544433 3365555443 4555555 89999999999999999999999975433 2232 122334
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVT-IASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGV 563 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 563 (813)
...+-..++++.|.+.|..+.+. .|..+. |.-+.......+...+|...+....... ..++.+++.+...|.+...
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 55666778999999999999885 466543 4344333344577788888888776642 3355566667778888888
Q ss_pred HHHHHHHHhhCC-----CCCHhHHHHHHHHHHh------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 046631 564 INYAANVFAKIP-----EKNSVTYTTMILGYGQ------------HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY 626 (813)
Q Consensus 564 ~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 626 (813)
+..|.+-|..+. .+|+.+.-+|.+.|.+ .+..++|+++|.+.+... +-|...-+.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 888888665554 2355555555555442 345689999999998842 3344455566667789
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhC---cCCChHHHHHHHHHHHHHhCCHHHHH
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELG---EEGNVLEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 703 (813)
.|++.+|..+|.+..+.. .-...+|..++.+|..+|+|-.|+++|+..- ...+...+...|..++...|.+.+|.
T Consensus 659 kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred ccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999998762 2346778899999999999999999998862 22345559999999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHH-------------------hcCCcHHHHHHHHHHHHCCC
Q 046631 704 VVAKKLLEMDTRNSMPGYHVLLSNIYA-------------------EEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~m~~~~~ 750 (813)
..+..+....|.+ +.....++-+.. ..+..+.|.++|..|...+-
T Consensus 737 ~~ll~a~~~~p~~--~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 737 EALLKARHLAPSN--TSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHhCCcc--chHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998 665554444432 34567788888888887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-17 Score=183.93 Aligned_cols=424 Identities=13% Similarity=0.034 Sum_probs=299.0
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCC
Q 046631 296 VWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERD 375 (813)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (813)
.+......+.+.|++++|+..|.+.+. +.|+...|..+-.++.+.|+++.|...+..+++- .+.+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l------------~p~~ 193 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL------------DPDY 193 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc------------CCCC
Confidence 344556778889999999999966654 4577778888888899999999999998888772 1235
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMY 455 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (813)
...|..+..+|...|++++|+..|......+-. +......++..... ..+........+..+........+.. |
T Consensus 194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~-~ 267 (615)
T TIGR00990 194 SKALNRRANAYDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGN-Y 267 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHH-H
Confidence 668888999999999999999888776554311 11112222221111 12222333333333322222222222 2
Q ss_pred HhcCCHHHHHHHHhhcCCCCCC-hhhHHHHHHHH---HhCCChHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHhccCCCh
Q 046631 456 AKSGLIKTARQIFEKNDSGDRD-QATWNAMIAGY---TQNGLLEEAFVAFRQMLEHN-VTPN-VVTIASVLPACNPMGNI 529 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~---~~~~~~~~A~~~~~~m~~~~-~~p~-~~t~~~ll~~~~~~~~~ 529 (813)
...........-+.......+. ...+..+...+ ...+++++|++.|++....+ ..|+ ...+..+...+...|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 2222222222222222211221 11122111111 23478999999999998864 3343 34566777778889999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMK 606 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (813)
++|...++...... +.....|..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++.+
T Consensus 348 ~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 348 LEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999988763 22355788888999999999999999998763 367899999999999999999999999999
Q ss_pred hCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChH
Q 046631 607 GCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVL 683 (813)
Q Consensus 607 ~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~ 683 (813)
+. .|+ ...+..+...+.+.|++++|+..|++..+. .|+ ...+..++.++...|++++|++.+++. ...|...
T Consensus 427 ~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 427 DL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred Hc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 84 554 456777888899999999999999999854 575 888999999999999999999999985 3333211
Q ss_pred H-------HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 684 E-------IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 684 ~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
. .++..+..+...|++++|+..++++++++|++ ...+..++.+|...|++++|.+.+++..+.
T Consensus 502 ~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~--~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 502 PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC--DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1 22223333445699999999999999999988 788999999999999999999999998765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-17 Score=184.63 Aligned_cols=330 Identities=13% Similarity=0.044 Sum_probs=272.2
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhc
Q 046631 379 WNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKS 458 (813)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (813)
...++..+.+.|++++|+.+++........+ ...+..++.++...|+++.|...++.+.+..+.....+..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 4456778899999999999999999874333 334445556677899999999999999999888878888899999999
Q ss_pred CCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHH
Q 046631 459 GLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHG 537 (813)
Q Consensus 459 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 537 (813)
|++++|...|++.....| +...+..+...+...|++++|...++.+.... |+.......+..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999877667 56788999999999999999999999887753 333322222334778899999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHH----HHHHHHHHHhCCC
Q 046631 538 FSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSER----ALSLFRSMKGCGI 610 (813)
Q Consensus 538 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~ 610 (813)
.+.+....++...+..+...+.+.|++++|...|+++.. .+...+..+...|...|++++ |+..|++..+ .
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--F 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--h
Confidence 887764334445556667888999999999999998763 367788899999999999986 8999999998 4
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHH
Q 046631 611 EPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWG 687 (813)
Q Consensus 611 ~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 687 (813)
.|+ ...+..+...+...|++++|...+++..+. .|+ ...+..++.+|.+.|++++|++.++++. ..|+....+.
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 555 457888889999999999999999999854 675 7778889999999999999999999874 5566654555
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.+..++...|+.++|...++++++..|++
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 56778899999999999999999999986
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-17 Score=183.73 Aligned_cols=355 Identities=9% Similarity=-0.055 Sum_probs=287.9
Q ss_pred HHHCCCcHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHH
Q 046631 386 FVQNGLDDEGLMLVYEMQKQG--FMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKT 463 (813)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 463 (813)
+.+..+|+.-.-.|..-.++- -.-+......++..+.+.|+++.|..++..++...+........++......|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 345666666555555443321 112233455667888999999999999999999999888666667777888999999
Q ss_pred HHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 046631 464 ARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPN-VVTIASVLPACNPMGNIELGKQLHGFSIR 541 (813)
Q Consensus 464 A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 541 (813)
|...|+++....| +...|..+...+.+.|++++|+..|+++... .|+ ...+..+...+...|+.++|...+..+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999887777 5668888999999999999999999999885 454 55777888899999999999999998776
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 046631 542 YLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK----NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITF 617 (813)
Q Consensus 542 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 617 (813)
....+ ...+..+ ..+.+.|++++|...++.+.+. +...+..+...+...|++++|+..++++.+.. +.+...+
T Consensus 173 ~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 54333 2233333 3478899999999999987642 33445556778899999999999999999853 3345577
Q ss_pred HHHHHHHhccCcHHH----HHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHH
Q 046631 618 VAVLSACSYAGLVDE----GLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLG 691 (813)
Q Consensus 618 ~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~ 691 (813)
..+...+...|++++ |...|+++. .+.|+ ...+..++.++.+.|++++|+..+++. ...|+.+.++..+..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 788889999999986 899999988 45785 889999999999999999999999987 556777778999999
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 692 SCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 692 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
++...|++++|...++++++.+|.+ +..+..++.++...|++++|...+++..+..+
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~--~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVT--SKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999987 67677778999999999999999999887644
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-16 Score=174.86 Aligned_cols=424 Identities=11% Similarity=0.041 Sum_probs=236.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 046631 194 WNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMY 273 (813)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 273 (813)
+...-..+.+.|++++|+..|++.+. +.|+...|..+..++...|++++|...+..+++..+. +...+..+..+|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~---~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD---YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHH
Confidence 44556677888999999999998876 5677778888888888888888888888888887643 556677777777
Q ss_pred HhcCChHHHHHHHhhcCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHH
Q 046631 274 AELGCFDFARKIFDNCLERNT---EVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQ 350 (813)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 350 (813)
...|++++|..-|......+. .....++..+.. ..+.......+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-------------------------- 254 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-------------------------- 254 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC--------------------------
Confidence 777777777766654322111 111111111110 11111111111111
Q ss_pred HHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCH-hHHHHHHHH---HhcCCC
Q 046631 351 QLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDS-VTVTALLSA---ASNLRN 426 (813)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~---~~~~~~ 426 (813)
+.+...+..+. .|......+....-+.+-.+ ..++. ..+..+... ....++
T Consensus 255 ----------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 255 ----------------------PENLPSVTFVG-NYLQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred ----------------------CCCCCCHHHHH-HHHHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhh
Confidence 11111111111 11111111111111110000 00000 000000000 011123
Q ss_pred hHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046631 427 QDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQML 505 (813)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 505 (813)
++.|...++..++.+.. .| +...|+.+...+...|++++|+..|++.+
T Consensus 310 y~~A~~~~~~al~~~~~-------------------------------~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 310 YEEAARAFEKALDLGKL-------------------------------GEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred HHHHHHHHHHHHhcCCC-------------------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333332210 11 22234444444444444444444444444
Q ss_pred HCCCCCC-HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhH
Q 046631 506 EHNVTPN-VVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVT 581 (813)
Q Consensus 506 ~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~ 581 (813)
+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+ | +...
T Consensus 359 ~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 359 EL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred Hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 32 222 2233444444444444444444444444332 22345666777777888888888888877652 3 5667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCCh-h-------H
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPST-E-------H 652 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~ 652 (813)
|..+...+.+.|++++|+..|++.++. .|+ ...+..+...+...|++++|+..|++..+ +.|+. . .
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHH
Confidence 777888888888999999998888873 444 56777788888888999999998888774 34431 1 1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
++.....+...|++++|.+++++. ...|+...++..++..+...|++++|...+++++++.+..
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 122223344568999999998885 5566666578889999999999999999999998887654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-16 Score=178.67 Aligned_cols=400 Identities=9% Similarity=-0.017 Sum_probs=189.3
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhhcCC-C--CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 046631 262 DLFVASSAIFMYAELGCFDFARKIFDNCLE-R--NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALS 338 (813)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~ 338 (813)
+.....-.+......|+.++|++++.+... . +...+..+...+...|++++|+.+|++.+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------------- 79 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------------- 79 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence 333344445555556666666666665543 1 33346666666666666666666664444322
Q ss_pred HhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 046631 339 AVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALL 418 (813)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 418 (813)
+.+...+..+...+...|++++|+..+++..+. .|+...+..+.
T Consensus 80 ----------------------------------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la 123 (765)
T PRK10049 80 ----------------------------------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALA 123 (765)
T ss_pred ----------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 122334445555566666666666666666654 22222255555
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChh------hHHHHHHHHH---
Q 046631 419 SAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQA------TWNAMIAGYT--- 489 (813)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~li~~~~--- 489 (813)
.++...|+.+.|...++.+++..+....+...+...+...+..++|...++.... .|+.. ....++..+.
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccc
Confidence 5556666666666666666666655554445566667777777778777776664 33310 1111122111
Q ss_pred --hCCCh---HHHHHHHHHHHHC-CCCCCHH-HHHH----HHHHhccCCChHHHHHHHHHHHHcCCC-CchhHHHHHHHH
Q 046631 490 --QNGLL---EEAFVAFRQMLEH-NVTPNVV-TIAS----VLPACNPMGNIELGKQLHGFSIRYLLD-QNVFVGTSLIDM 557 (813)
Q Consensus 490 --~~~~~---~~A~~~~~~m~~~-~~~p~~~-t~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~ 557 (813)
..+++ ++|++.++.+.+. ...|+.. .+.. .+.++...|+.++|+..|+.+.+.+.. |+- ....+..+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 11223 5566666666643 1122211 1100 012223334555555555555444321 111 11113444
Q ss_pred HHhcCCHHHHHHHHhhCCCCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCCH---HH
Q 046631 558 YSKSGVINYAANVFAKIPEKN-------SVTYTTMILGYGQHGMSERALSLFRSMKGCGI-----------EPDA---IT 616 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~~ 616 (813)
|...|++++|+..|+++.+.+ ...+..+..++...|++++|+.+++++.+... .|+. ..
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 555555555555555443211 12233344444555555555555555544210 0111 12
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHH
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 694 (813)
+..+...+...|+.++|+++++++... .|+ ...+..++.++...|++++|++.+++. ...|+....+..++..+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 223333444444555555544444422 332 444444444444445555555444443 223443334444444444
Q ss_pred HhCCHHHHHHHHHHHhcCCCCC
Q 046631 695 LHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..|++++|+..++++++..|++
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCC
Confidence 4444555555555555444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=177.81 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIP--EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY-- 626 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~-- 626 (813)
++.++.+|.+.|++++|.+.++++. .|+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhcc
Confidence 4444455555555555555555443 23333445555555555555555555555555 24555555555544332
Q ss_pred -cCcHHHHHHHHHHHHHhcCCCCCh
Q 046631 627 -AGLVDEGLQIFDLMQQEYKIQPST 650 (813)
Q Consensus 627 -~g~~~~a~~~~~~~~~~~~~~p~~ 650 (813)
.|+.+++..++++|.+. ++.|++
T Consensus 330 ~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred CCccchhHHHHHHHHHHH-HHhCCC
Confidence 33555555555555554 444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-16 Score=177.09 Aligned_cols=368 Identities=10% Similarity=0.005 Sum_probs=283.1
Q ss_pred CcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 046631 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDM 454 (813)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 454 (813)
+...+..+...+.+.|++++|.++|++..+.. +.+...+..+...+...|++++|...++.+++..+.... ...+...
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~ 125 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV 125 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 44568889999999999999999999988762 333556667778889999999999999999998766657 8888999
Q ss_pred HHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHhc---
Q 046631 455 YAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNV------VTIASVLPACN--- 524 (813)
Q Consensus 455 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~--- 524 (813)
+...|+.++|...+++.....| +...+..+...+...+..++|+..++.... .|+. .....++....
T Consensus 126 l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999887777 555677788888899999999999886654 3332 01112222221
Q ss_pred --cCCCh---HHHHHHHHHHHHc-CCCCchhH--HHH---HHHHHHhcCCHHHHHHHHhhCCCCC---H-hHHHHHHHHH
Q 046631 525 --PMGNI---ELGKQLHGFSIRY-LLDQNVFV--GTS---LIDMYSKSGVINYAANVFAKIPEKN---S-VTYTTMILGY 589 (813)
Q Consensus 525 --~~~~~---~~a~~~~~~~~~~-~~~~~~~~--~~~---li~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~ 589 (813)
..+.+ +.|...++.+.+. ...|+... ... .+.++...|++++|+..|+++.+.+ + ..-..+...|
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~y 282 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAY 282 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 12233 6678888887754 33333211 111 1234567799999999999988532 1 1222257789
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC----------CCCC---hhHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEP---DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK----------IQPS---TEHY 653 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~ 653 (813)
...|++++|+..|+++.+..... .......+..++...|++++|.++++.+.+... -.|+ ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999988743211 124566677788999999999999999985410 1122 2356
Q ss_pred HHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhc
Q 046631 654 CCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE 732 (813)
Q Consensus 654 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 732 (813)
..++..+...|++++|++.++++ ...|....++..++..+...|+.++|+..++++++++|++ +..+..++.++...
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~--~~l~~~~a~~al~~ 440 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN--INLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHh
Confidence 67888999999999999999997 5567777799999999999999999999999999999999 89999999999999
Q ss_pred CCcHHHHHHHHHHHHCC
Q 046631 733 GNWENVDKVRKEMRERG 749 (813)
Q Consensus 733 g~~~~A~~~~~~m~~~~ 749 (813)
|+|++|..+++++.+..
T Consensus 441 ~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 441 QEWRQMDVLTDDVVARE 457 (765)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-12 Score=131.19 Aligned_cols=618 Identities=12% Similarity=0.063 Sum_probs=448.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhh
Q 046631 85 LPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMV 164 (813)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 164 (813)
+...|..+++..++.+ |. ++..|.+-.+.=-..|.+..|+.+ ++.+|-.|.+.++...
T Consensus 266 DikKaR~llKSvretn--P~-hp~gWIAsArLEEvagKl~~Ar~~------------------I~~GCe~cprSeDvWL- 323 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN--PK-HPPGWIASARLEEVAGKLSVARNL------------------IMKGCEECPRSEDVWL- 323 (913)
T ss_pred HHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHHhhHHHHHHHH------------------HHHHHhhCCchHHHHH-
Confidence 5678899999999888 43 444444433333334444444333 2333333322111100
Q ss_pred hhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHhhCCCChh
Q 046631 165 GLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI-SFVNVFPALSSLGDYK 243 (813)
Q Consensus 165 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~ 243 (813)
...+....+.|..+.-...+..+.+-..-+.+---..+...=.+++++.++. -|+.+ .|- +.....+.+
T Consensus 324 ----eaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv~LWK----aAVelE~~~ 393 (913)
T KOG0495|consen 324 ----EAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSVRLWK----AAVELEEPE 393 (913)
T ss_pred ----HHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchHHHHH----HHHhccChH
Confidence 0000133444444444333211111111122111122333445666666664 35544 443 344556667
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 046631 244 SADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE---RNTEVWNTMIGGYVQNNHPVEAIELFVQV 320 (813)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 320 (813)
.|+-++..+++.-+. ... |.-+|++..-++.|.+++.+..+ .+...|-+-...--.+|+.+....++.+.
T Consensus 394 darilL~rAveccp~---s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 394 DARILLERAVECCPQ---SMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred HHHHHHHHHHHhccc---hHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 788888888876533 333 34455666667888888776543 47888888777778899999998888665
Q ss_pred H---HhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHH
Q 046631 321 L---ELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGL 396 (813)
Q Consensus 321 m---~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 396 (813)
+ ...|+..+..-|..=...|-..|..-.+..+...++. |.... .--.+|+.-...|.+.+.++-|.
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee----------d~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE----------DRKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc----------hhHhHHhhhHHHHHhcchHHHHH
Confidence 5 5678888988898888899999999999998888887 65443 23467999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC
Q 046631 397 MLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR 476 (813)
Q Consensus 397 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 476 (813)
.+|...++. +.-+...|......--..|..+....++..++.+-+....++......+-..|++..|..++...-...|
T Consensus 537 AVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 537 AVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred HHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 999998875 3445667777777777789999999999999999988877777788888889999999999998765566
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046631 477 -DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 477 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 555 (813)
+...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..-...++.++|.+++++..+.- +.-...|-.+.
T Consensus 616 nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlG 692 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLG 692 (913)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHh
Confidence 5668999999999999999999999998874 5777777666666677899999999998887752 22345778888
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 046631 556 DMYSKSGVINYAANVFAKIPE--K-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDE 632 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 632 (813)
+.+-+.++++.|.+.|..-.+ | .+..|-.|...--+.|+..+|..++++..-.+ +-+...|...|+.-.+.|+.+.
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence 899999999999999987664 4 46678888888888899999999999998864 4566789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 046631 633 GLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM 712 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 712 (813)
|..++.+..++ +..+-..|..-|.+..+.++-....+.+++...+|.+. -++...+....+++.|...|.+++..
T Consensus 772 a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl---laia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 772 AELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL---LAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999988875 33357788888888889999888888888876666544 44555556667899999999999999
Q ss_pred CCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEE
Q 046631 713 DTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYV 765 (813)
Q Consensus 713 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 765 (813)
+|++ ..++..+-..+...|.-++-.+++.+.....+ .-|..|..++-.+
T Consensus 847 d~d~--GD~wa~fykfel~hG~eed~kev~~~c~~~EP--~hG~~W~avSK~i 895 (913)
T KOG0495|consen 847 DPDN--GDAWAWFYKFELRHGTEEDQKEVLKKCETAEP--THGELWQAVSKDI 895 (913)
T ss_pred CCcc--chHHHHHHHHHHHhCCHHHHHHHHHHHhccCC--CCCcHHHHHhhhH
Confidence 9999 88888887888899999999999998887653 3455665554433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-14 Score=162.06 Aligned_cols=424 Identities=9% Similarity=0.003 Sum_probs=266.5
Q ss_pred hCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcc-hHHHH--HHHHHhCCCchHH
Q 046631 237 SSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTE-VWNTM--IGGYVQNNHPVEA 313 (813)
Q Consensus 237 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~~~A 313 (813)
.+.|+++.|...|+++.+..+. ....++ .++..+...|+.++|+..+++...++.. .+..+ ...|...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~--~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPL--QSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCcc--chhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4556666666666666666633 112233 6666677777777777777777655333 33333 3466667888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcH
Q 046631 314 IELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDD 393 (813)
Q Consensus 314 ~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 393 (813)
+++|++.+....- |...+..++..+...++.+
T Consensus 122 iely~kaL~~dP~------------------------------------------------n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 122 LALWQSSLKKDPT------------------------------------------------NPDLISGMIMTQADAGRGG 153 (822)
T ss_pred HHHHHHHHhhCCC------------------------------------------------CHHHHHHHHHHHhhcCCHH
Confidence 8888555544321 2222333444444455555
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 046631 394 EGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDS 473 (813)
Q Consensus 394 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 473 (813)
+|++.++++... .|+...+..++..+...++...|...++.+++..+....++..++....+.|-...|.++.++-+.
T Consensus 154 eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~ 231 (822)
T PRK14574 154 VVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN 231 (822)
T ss_pred HHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc
Confidence 555555554443 333333322222222233333355555555555544444445555555566666566555554332
Q ss_pred CCCChh-hH--HHHHHHHH---------hCCC---hHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHhccCCChHHH
Q 046631 474 GDRDQA-TW--NAMIAGYT---------QNGL---LEEAFVAFRQMLEH-NVTPNV-V----TIASVLPACNPMGNIELG 532 (813)
Q Consensus 474 ~~~~~~-~~--~~li~~~~---------~~~~---~~~A~~~~~~m~~~-~~~p~~-~----t~~~ll~~~~~~~~~~~a 532 (813)
.-.... .+ ...+.-.. ...+ .+.|+.-++.+... +-.|.. . ...-.+-++...++..++
T Consensus 232 ~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 232 LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL 311 (822)
T ss_pred ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 111000 00 00000001 1112 34555666665542 122321 1 122345566778888889
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---------CHhHHHHHHHHHHhcCChHHHHHHHH
Q 046631 533 KQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK---------NSVTYTTMILGYGQHGMSERALSLFR 603 (813)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (813)
+..++.+...+.+....+-.++.++|...+++++|..+|+++..+ +......|.-+|...+++++|..+++
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999998888887766778888999999999999999999987531 23335778889999999999999999
Q ss_pred HHHhCC-------------CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHH
Q 046631 604 SMKGCG-------------IEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 604 ~m~~~g-------------~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 668 (813)
++.+.- ..||-. .+..++..+...|++.+|.+.++++.. ..| |......+.+++...|+..+
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHH
Confidence 998731 112222 344456678889999999999999974 467 68999999999999999999
Q ss_pred HHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 669 AYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 669 A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
|++.++.. ...|+...+....+.+....+++++|..+.+.+++..|++
T Consensus 469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 99999776 4567666678888888889999999999999999999998
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-16 Score=145.25 Aligned_cols=309 Identities=11% Similarity=0.105 Sum_probs=229.7
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc-CCCCc--hhHHHHHHHHHHhcCCHH
Q 046631 489 TQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY-LLDQN--VFVGTSLIDMYSKSGVIN 565 (813)
Q Consensus 489 ~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~li~~~~~~g~~~ 565 (813)
.-.++.++|.++|-+|.+.. +.+..+-.++-+.+.+.|.++.|+++|+.+.++ +++-+ ......|..-|.+.|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34567888888888888742 223345556777788888888888888887776 33222 234556778899999999
Q ss_pred HHHHHHhhCCC-C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHH
Q 046631 566 YAANVFAKIPE-K--NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI----TFVAVLSACSYAGLVDEGLQIFD 638 (813)
Q Consensus 566 ~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~ 638 (813)
+|+.+|..+.+ + -..+...|+..|....+|++|+++-+++.+.+-.+..+ .|+.|...+....+++.|..++.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999886 3 35578889999999999999999999999987666654 68888888888999999999999
Q ss_pred HHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCC--ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 639 LMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEG--NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 639 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+..+. .|+ ++.-..+++.+...|+++.|.+.++.+..+. ..+.+...|..+|.+.|+.+++...+.++.+..+.
T Consensus 205 kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99855 675 8888899999999999999999999985443 34558899999999999999999999999998888
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHc
Q 046631 716 NSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNA 795 (813)
Q Consensus 716 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 795 (813)
. .....+........-.++|..++.+-..+.+....-...++. ...|.+.....+-...|..+..+..+.
T Consensus 282 ~---~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~-------~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 282 A---DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY-------HLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred c---cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh-------hhccccccchhhhHHHHHHHHHHHHhh
Confidence 4 555566666555555566666554444332211110011110 011222334455567788888877788
Q ss_pred CCccCCCCCCCCCCCC
Q 046631 796 GNKTIQNSNVDATPRF 811 (813)
Q Consensus 796 ~~~~~c~~c~~~~~~~ 811 (813)
...|+|..|||..+.|
T Consensus 352 ~~~YRC~~CGF~a~~l 367 (389)
T COG2956 352 KPRYRCQNCGFTAHTL 367 (389)
T ss_pred cCCceecccCCcceee
Confidence 8899999999998764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-14 Score=138.71 Aligned_cols=368 Identities=15% Similarity=0.114 Sum_probs=249.6
Q ss_pred HHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCC
Q 046631 182 VFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVN 261 (813)
Q Consensus 182 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 261 (813)
++-+...++..+|..||.++|+.-..++|.+++++-.....+.+..+||.+|.+-.- ...+++..+|...... |
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~--P 271 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT--P 271 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC--C
Confidence 444444557789999999999999999999999999988889999999999988653 3348899999999988 9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhh----c----CCCCcchHHHHHHHHHhCCCchH-HHHHHHHHHHh---C---CC
Q 046631 262 DLFVASSAIFMYAELGCFDFARKIFDN----C----LERNTEVWNTMIGGYVQNNHPVE-AIELFVQVLEL---D---EI 326 (813)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~~~~~----~----~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~m~~---~---g~ 326 (813)
|.+++|+++...++.|+++.|++.+-+ | .+|...+|..+|.-+++.+++.+ |..++.+.+.. . .+
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 999999999999999999988766543 3 56788999999999999998855 34444343332 1 13
Q ss_pred CC-ChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCC---cchHHHHHHHHHHCCCcHHHHHHHHHH
Q 046631 327 VF-DDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERD---VVSWNTMISAFVQNGLDDEGLMLVYEM 402 (813)
Q Consensus 327 ~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (813)
.| |...|...+..|.+..+.+.|.+++..+..|-... . +.++ ..-|..+....++....+..+.+|+.|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~--~-----ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK--F-----IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh--h-----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 44567889999999999999999999887732111 0 1222 234667888889999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhH
Q 046631 403 QKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATW 481 (813)
Q Consensus 403 ~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 481 (813)
.-+-+-|+..+...++++....+.++...+++..++..|.... .+...++..+++..- .|+...-
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~--------------hp~tp~r 490 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL--------------HPLTPER 490 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC--------------CCCChHH
Confidence 9888899999999999999999999999999999999887666 444444444444320 1221111
Q ss_pred HHHHHHHHh--CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC-CCchhHHH---HHH
Q 046631 482 NAMIAGYTQ--NGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLL-DQNVFVGT---SLI 555 (813)
Q Consensus 482 ~~li~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~---~li 555 (813)
..+-....+ ..-.+.....-.+|.+.... ....+.++-.+.+.|..++|.+++..+.+.+- -|-....| -++
T Consensus 491 ~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 491 EQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 111111111 01111111222233333322 23334444445566666666666666544321 22222233 344
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC
Q 046631 556 DMYSKSGVINYAANVFAKIPEKN 578 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~ 578 (813)
+.-.+..+...|..+++-+...|
T Consensus 569 d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Confidence 44555666666666666665433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-14 Score=157.45 Aligned_cols=424 Identities=9% Similarity=-0.009 Sum_probs=310.3
Q ss_pred HHHhCCCchHHHHHHHHHHHhCCCCCCh--hhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHH
Q 046631 303 GYVQNNHPVEAIELFVQVLELDEIVFDD--VTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWN 380 (813)
Q Consensus 303 ~~~~~g~~~~A~~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (813)
...+.|+++.|++.|.+.++.. |+. ..+ .++..+...|+.++|...++.... +.+...+.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--------------p~n~~~~~ 104 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--------------SMNISSRG 104 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--------------CCCCCHHH
Confidence 4578999999999996666544 443 122 777778888999999998887752 11333344
Q ss_pred HH--HHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhc
Q 046631 381 TM--ISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKS 458 (813)
Q Consensus 381 ~l--i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (813)
.+ ...|...|++++|+++|+++.+.. +-+...+..+...+...++.++|...+..+.+..+.... +..++..+...
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~l~layL~~~~ 182 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-YMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-HHHHHHHHHhc
Confidence 44 557888899999999999999874 223456667778888999999999999999888766332 24455555556
Q ss_pred CCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHh---c--cC
Q 046631 459 GLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV------TIASVLPAC---N--PM 526 (813)
Q Consensus 459 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~------t~~~ll~~~---~--~~ 526 (813)
++..+|++.++++....| +...+..+...+.+.|-...|+++.++-... +.+... .....++.- . ..
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 777679999999887778 5667788889999999999999877653211 111110 011111110 0 11
Q ss_pred CC---hHHHHHHHHHHHHc-CCCCch-hH-HH---HHHHHHHhcCCHHHHHHHHhhCCCC----CHhHHHHHHHHHHhcC
Q 046631 527 GN---IELGKQLHGFSIRY-LLDQNV-FV-GT---SLIDMYSKSGVINYAANVFAKIPEK----NSVTYTTMILGYGQHG 593 (813)
Q Consensus 527 ~~---~~~a~~~~~~~~~~-~~~~~~-~~-~~---~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g 593 (813)
.. .+.|..-++.+... +-.|.. .. .. -.+-++.+.|++.++++.|+.+..+ -..+-..+..+|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 12 23444445554442 332321 11 22 3345677899999999999999843 2345667889999999
Q ss_pred ChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC----------CCC--C-hhHHHH
Q 046631 594 MSERALSLFRSMKGCGI-----EPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK----------IQP--S-TEHYCC 655 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~-----~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p--~-~~~~~~ 655 (813)
++++|+.+|+++..... .++......|.-++...+++++|..+++.+.+..- -.| | ...+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 99999999999976431 22333456788899999999999999999987311 013 3 556667
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
++..+...|++.+|++.++++ ...|....++..+...+...|...+|+..++.+..++|++ .......+.++...|+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~--~~~~~~~~~~al~l~e 499 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS--LILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc--HHHHHHHHHHHHhhhh
Confidence 888899999999999999998 5567777799999999999999999999999999999999 8999999999999999
Q ss_pred cHHHHHHHHHHHHCC
Q 046631 735 WENVDKVRKEMRERG 749 (813)
Q Consensus 735 ~~~A~~~~~~m~~~~ 749 (813)
|++|..+.+++.+..
T Consensus 500 ~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 500 WHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999998887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.6e-13 Score=139.80 Aligned_cols=613 Identities=14% Similarity=0.095 Sum_probs=332.5
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCC-ChhHhhHHHHHhhcCCCchhh
Q 046631 83 NNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNP-SRFVYNSLLNMYSTCLSSLDA 161 (813)
Q Consensus 83 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a 161 (813)
+|+.++|.+++.++++.. |. ....|..|...+-+.|+.+.+...+-.. ..+.| |...|..+.......
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~-~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~------ 220 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PR-NPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQL------ 220 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--cc-chhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhc------
Confidence 477777777777777665 33 5666777777777777776665544322 22233 345566666655555
Q ss_pred hhhhhcccccCCCChhHHHHHHcccCCCCcccHHHH---HHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHH----HHH
Q 046631 162 EMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTI---VSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVN----VFP 234 (813)
Q Consensus 162 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~----ll~ 234 (813)
|+++.|+-.|.+..+.++.-|-.+ ...|-+.|+...|.+-|.++.+..-..|..-+.. +++
T Consensus 221 ------------~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 221 ------------GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred ------------ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 677777777766664333333322 3445566777777777666665421111112222 233
Q ss_pred HhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHhCCCc
Q 046631 235 ALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE----RNTEVWNTMIGGYVQNNHP 310 (813)
Q Consensus 235 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~ 310 (813)
.+...++.+.|.+.+......+.. .-+...++.++.+|.+...++.|......+.. +|..-|.+-= .+-
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~-~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~------~~~ 361 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKD-EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE------RRR 361 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh------hcc
Confidence 333444445555555544442211 02233344444555554444444444333221 1111110000 000
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHC
Q 046631 311 VEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQN 389 (813)
Q Consensus 311 ~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 389 (813)
.+-..++ . ...++.++... .-+.-++.+....+....+...+.. ... +.-+...|.-+..+|.+.
T Consensus 362 ~~~~~~~-~--~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~----------~~d~~dL~~d~a~al~~~ 427 (895)
T KOG2076|consen 362 EEPNALC-E--VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVW----------VSDDVDLYLDLADALTNI 427 (895)
T ss_pred ccccccc-c--CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCC----------hhhhHHHHHHHHHHHHhc
Confidence 0000000 0 00111122222 1222233445555555555555444 211 123566788899999999
Q ss_pred CCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 046631 390 GLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFE 469 (813)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 469 (813)
|++.+|+.+|..+...-..-+...|-.+..++...+..+.|.+.|+.++...+....+...|...|-+.|+.++|.+.+.
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999876555677888899999999999999999999999998888888899999999999999999999
Q ss_pred hcCCCCCC------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-----CCC-----------------CHHH
Q 046631 470 KNDSGDRD------------QATWNAMIAGYTQNGLLEEAFVAFRQMLEHN-----VTP-----------------NVVT 515 (813)
Q Consensus 470 ~~~~~~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-----~~p-----------------~~~t 515 (813)
.+. .|| .-.--.....|.+.|+.++-+.+-..|+... +-| ...+
T Consensus 508 ~~~--~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~ 585 (895)
T KOG2076|consen 508 QII--NPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSEL 585 (895)
T ss_pred ccc--CCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchh
Confidence 876 443 1122334556778888887666655554321 111 1112
Q ss_pred HHHHHHHhccCCChHHHHHHH------HHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----CH---
Q 046631 516 IASVLPACNPMGNIELGKQLH------GFSIRYLLDQNV--FVGTSLIDMYSKSGVINYAANVFAKIPEK-----NS--- 579 (813)
Q Consensus 516 ~~~ll~~~~~~~~~~~a~~~~------~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--- 579 (813)
...++.+-.+.++......-. ......|+..+. ..+.-++..+++.+++++|+.+...+... +.
T Consensus 586 ~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~ 665 (895)
T KOG2076|consen 586 LKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIR 665 (895)
T ss_pred HHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHH
Confidence 222233333333322111111 111112222222 24556778889999999999998877642 22
Q ss_pred -hHHHHHHHHHHhcCChHHHHHHHHHHHhC-CC--CCCHH-HHHHHHHHHhccC--------------------------
Q 046631 580 -VTYTTMILGYGQHGMSERALSLFRSMKGC-GI--EPDAI-TFVAVLSACSYAG-------------------------- 628 (813)
Q Consensus 580 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--~p~~~-~~~~ll~a~~~~g-------------------------- 628 (813)
..-..++.+....+++..|...++.|... +. .|... .|+...+...+.|
T Consensus 666 k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i 745 (895)
T KOG2076|consen 666 KELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALI 745 (895)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeee
Confidence 23345567778889999999999998874 11 22222 3332333333332
Q ss_pred ---------cHHHHHHHHHHHHHhcCCCCChhHHH-HHHHHHhc----------cCCHHHHHHHHHHh---CcCCChHHH
Q 046631 629 ---------LVDEGLQIFDLMQQEYKIQPSTEHYC-CVADMLGR----------VGKVVEAYEFVKEL---GEEGNVLEI 685 (813)
Q Consensus 629 ---------~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~~---~~~~~~~~~ 685 (813)
.+..|+..+-+.. ...||....+ +++-++.. .-..-+++.++++- ....+.-.+
T Consensus 746 ~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa 822 (895)
T KOG2076|consen 746 YGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEA 822 (895)
T ss_pred echhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3344444443333 2245422222 22222210 11122333333322 211123336
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC----------chhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM----------PGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
+..++.+|...|-...|..+|+++++..|.+-. ..+-..|.-+|...|+...|..++++
T Consensus 823 ~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 823 FYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 667777777777777788888888777654310 01122244577777877777777654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-13 Score=128.10 Aligned_cols=439 Identities=11% Similarity=0.097 Sum_probs=297.4
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhh--CCCChh-HHHHHHHHHHHhCCCCCCcHHHHHH
Q 046631 192 VAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALS--SLGDYK-SADVVYGLLVKLGSEYVNDLFVASS 268 (813)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~ 268 (813)
++=|.|+. ...+|..+++.-+|+.|++.|+..+...-..+++..+ +..++- .-.+.|-.|.+.|-. ...+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~---S~~sW-- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED---STSSW-- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc---ccccc--
Confidence 44555554 4457889999999999999998877766555555433 222222 122334444444432 22222
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchH
Q 046631 269 AIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDL 348 (813)
Q Consensus 269 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 348 (813)
+.|++.+ ++-+...+...++..||.++|+--..+.|.++| +.......+.+..+|+.+|.+.+-..+
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~-kE~~~~k~kv~~~aFN~lI~~~S~~~~--- 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELY-KEHRAAKGKVYREAFNGLIGASSYSVG--- 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHH-HHHHHhhheeeHHhhhhhhhHHHhhcc---
Confidence 3344433 555556667889999999999999999999999 777778889999999999987654433
Q ss_pred HHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHH----HHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 046631 349 GQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDE----GLMLVYEMQKQGFMIDSVTVTALLSAASN 423 (813)
Q Consensus 349 a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 423 (813)
+++..+|.. . ..||..|+|+++.+..+.|+++. |++++.+|++-|+.|...+|..+|.-+++
T Consensus 258 -K~Lv~EMisqk------------m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 258 -KKLVAEMISQK------------MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred -HHHHHHHHHhh------------cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 677777776 4 57999999999999999998864 57789999999999999999999999998
Q ss_pred CCChHH-HHHHHHHHH----HhCCC---Cc--chHHHHHHHHHhcCCHHHHHHHHhhcCCC------CCC---hhhHHHH
Q 046631 424 LRNQDV-GKQTHAYLL----RHGIH---FE--GMESYLIDMYAKSGLIKTARQIFEKNDSG------DRD---QATWNAM 484 (813)
Q Consensus 424 ~~~~~~-a~~~~~~~~----~~~~~---~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~---~~~~~~l 484 (813)
.++..+ +..+...+. ...+. ++ ..+...++.|.+..+.+-|.++-.-+... .|+ ..-|..+
T Consensus 325 e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~ 404 (625)
T KOG4422|consen 325 ESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKF 404 (625)
T ss_pred cCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHH
Confidence 888754 333333333 22222 22 45566777777888888888877654322 122 2346677
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVI 564 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 564 (813)
....|+....+.-+..|+.|+-.-+-|+..+...++++....+.++..-+++..++..|.........-+...+++..-
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~- 483 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL- 483 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC-
Confidence 8888999999999999999999888999999999999999999999999999999988765444433333333333220
Q ss_pred HHHHHHHhhCCCCCHhHHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046631 565 NYAANVFAKIPEKNSVTYTTMILGYGQ--HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQ 642 (813)
Q Consensus 565 ~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 642 (813)
.|+...-..+-...++ ..-.+.....-.+|.+....| ...+..+-.+.+.|..++|.+++..+.+
T Consensus 484 -----------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~ 550 (625)
T KOG4422|consen 484 -----------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLR 550 (625)
T ss_pred -----------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHh
Confidence 2221111111111111 111122222334555543443 4455555567788889999988888865
Q ss_pred hcCCCCChhHHH---HHHHHHhccCCHHHHHHHHHHh
Q 046631 643 EYKIQPSTEHYC---CVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 643 ~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
...--|.....+ -+++.-.+......|...++-+
T Consensus 551 ~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 551 KHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred cCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 534445444445 4555556777888888888777
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-14 Score=147.97 Aligned_cols=483 Identities=12% Similarity=0.055 Sum_probs=278.7
Q ss_pred HHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhccc
Q 046631 90 ILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYV 169 (813)
Q Consensus 90 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 169 (813)
..+|..+...| ..|+..||.++|.-|+..|+++.|- +|.-|.-..+..+..+++.++.+....
T Consensus 10 tnfla~~e~~g--i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A-------------- 72 (1088)
T KOG4318|consen 10 TNFLALHEISG--ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA-------------- 72 (1088)
T ss_pred chHHHHHHHhc--CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc--------------
Confidence 35677888888 9999999999999999999999998 999998888888889999999988877
Q ss_pred ccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHH-HHHCCCCCCHhhHHHHHHHhhCCCChhHHHHH
Q 046631 170 EVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRM-MLRMGIRPSTISFVNVFPALSSLGDYKSADVV 248 (813)
Q Consensus 170 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 248 (813)
++.+.+. .|...+|+.|..+|.++|+... ++..++ |.. ++..+...|....-..+
T Consensus 73 ----nd~Enpk-------ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~------------i~~sfs~~Gvgs~e~~f 128 (1088)
T KOG4318|consen 73 ----NDAENPK-------EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLES------------INQSFSDHGVGSPERWF 128 (1088)
T ss_pred ----ccccCCC-------CCchhHHHHHHHHHHhccchHH-HHHHHHHHHH------------HHhhhhhhccCcHHHHH
Confidence 5554444 5778899999999999998765 333333 221 22222333332222222
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCC--CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCC
Q 046631 249 YGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLER--NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEI 326 (813)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~ 326 (813)
+-.+.-. +.+.||. ...+....-.|-++.+.+++..++.. +. +...+++-......+ ..++. .+.+...-
T Consensus 129 l~k~~c~-p~~lpda---~n~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntp--vekLl-~~cksl~e 200 (1088)
T KOG4318|consen 129 LMKIHCC-PHSLPDA---ENAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTP--VEKLL-NMCKSLVE 200 (1088)
T ss_pred HhhcccC-cccchhH---HHHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCch--HHHHH-HHHHHhhc
Confidence 2111100 1111333 23444455567778888888777543 11 111134444333333 22333 22222212
Q ss_pred CCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHC
Q 046631 327 VFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQ 405 (813)
Q Consensus 327 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (813)
.|++.+|..+++.....|+.+.|..++..|.+ |++.. ..-|..|+-+ .++...+..+++-|.+.
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir------------~HyFwpLl~g---~~~~q~~e~vlrgmqe~ 265 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR------------AHYFWPLLLG---INAAQVFEFVLRGMQEK 265 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc------------cccchhhhhc---CccchHHHHHHHHHHHh
Confidence 69999999999999999999999999999999 87655 3334445444 88889999999999999
Q ss_pred CCCCCHhHHHHHHHHHhcCCChHHHH-----------HHHHHHHHh-------------------------CCCCc-chH
Q 046631 406 GFMIDSVTVTALLSAASNLRNQDVGK-----------QTHAYLLRH-------------------------GIHFE-GME 448 (813)
Q Consensus 406 g~~pd~~t~~~ll~~~~~~~~~~~a~-----------~~~~~~~~~-------------------------~~~~~-~~~ 448 (813)
|+.|++.|+..-+..+..+|....+. .++..+.+. |++.. .++
T Consensus 266 gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw 345 (1088)
T KOG4318|consen 266 GVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIW 345 (1088)
T ss_pred cCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHH
Confidence 99999999988877777644322211 111111111 11111 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC-----CCChhhHHHHHHHHHhC----------------------CChHHHHHHH
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSG-----DRDQATWNAMIAGYTQN----------------------GLLEEAFVAF 501 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~----------------------~~~~~A~~~~ 501 (813)
...+. ....|.-++.+.+-..+... ..++..|..++.-|.+. ....+..++.
T Consensus 346 s~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell 424 (1088)
T KOG4318|consen 346 SMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELL 424 (1088)
T ss_pred HHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHH
Confidence 11111 11134444444444443310 11333443333333211 1111111111
Q ss_pred HHHHH----------------CCCCC-------CHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046631 502 RQMLE----------------HNVTP-------NVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMY 558 (813)
Q Consensus 502 ~~m~~----------------~~~~p-------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (813)
...+. +-+.| -...-+.++..|++.-+..++...-+.....-+. ..|..||+.+
T Consensus 425 ~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~ 501 (1088)
T KOG4318|consen 425 ENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLM 501 (1088)
T ss_pred HHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhH
Confidence 11100 00011 0112334455555555555555433333322211 4588888888
Q ss_pred HhcCCHHHHHHHHhhCCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhccCcH
Q 046631 559 SKSGVINYAANVFAKIPEKN------SVTYTTMILGYGQHGMSERALSLFRSMKGCGI-EPD-AITFVAVLSACSYAGLV 630 (813)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~ll~a~~~~g~~ 630 (813)
+....++.|..+.+++..+| ..-+..+.+.+.+.+....+..++.++.+.-. .|+ ..++..++..-...|+.
T Consensus 502 ~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqq 581 (1088)
T KOG4318|consen 502 DLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQ 581 (1088)
T ss_pred HHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCH
Confidence 88888888888888877553 34567777777888888888888888776422 221 33455555555566665
Q ss_pred HHHHHHHHHH
Q 046631 631 DEGLQIFDLM 640 (813)
Q Consensus 631 ~~a~~~~~~~ 640 (813)
+...++++-+
T Consensus 582 e~Lkkl~d~l 591 (1088)
T KOG4318|consen 582 EKLKKLADIL 591 (1088)
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-12 Score=136.47 Aligned_cols=549 Identities=11% Similarity=0.035 Sum_probs=370.4
Q ss_pred CChhHHHHHHcccCCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHhhCCCChhHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRR---NVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRP-STISFVNVFPALSSLGDYKSADVVY 249 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 249 (813)
|++++|.+++.++.+. +...|.+|...|-..|+.++++..+-..-. ..| |..-|..+-.-..+.|++++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999999863 567899999999999999999887755443 444 4457888888888999999999999
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCc----c----hHHHHHHHHHhCCCchHHHHHHHHHH
Q 046631 250 GLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNT----E----VWNTMIGGYVQNNHPVEAIELFVQVL 321 (813)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~~m 321 (813)
..+++..+. +....-.-+.+|-+.|+...|..-|.++...+. . .--.++..+...+.-+.|++.+....
T Consensus 231 ~rAI~~~p~---n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 231 SRAIQANPS---NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHhcCCc---chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999865 555666678899999999999998888755322 1 22234667777788899999997877
Q ss_pred HhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhcc---------C-CCCCcchHHH----HHHHH
Q 046631 322 ELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNA---------V-IERDVVSWNT----MISAF 386 (813)
Q Consensus 322 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~---------~-~~~~~~~~~~----li~~~ 386 (813)
...+-..+..+++.+...+.+...++.+......... ....++....+. + ..++..+|+. ++-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 7666677777888889999888888888776666554 322222221110 0 1222222222 23344
Q ss_pred HHCCCcHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHH
Q 046631 387 VQNGLDDEGLMLVYEMQKQGF--MIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKT 463 (813)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 463 (813)
......+....+..-..+..+ .-+...|.-+..++...|.+..|..++..+........ .++-.+..+|...|.++.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 445555555555555555553 33455788899999999999999999999998877666 899999999999999999
Q ss_pred HHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHhccCCChHHHHH
Q 046631 464 ARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLE--------HNVTPNVVTIASVLPACNPMGNIELGKQ 534 (813)
Q Consensus 464 A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--------~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 534 (813)
|.+.|+......| +...--.|...+-+.|+.++|++.+..+.. .+..|+..........+...|+.++-..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999876677 555667788889999999999999998652 2344555555555566677777776544
Q ss_pred HHHHHHHcC-----C-----------------CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCH----h
Q 046631 535 LHGFSIRYL-----L-----------------DQNVFVGTSLIDMYSKSGVINYAANVFAKIP--------EKNS----V 580 (813)
Q Consensus 535 ~~~~~~~~~-----~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~----~ 580 (813)
+...|+... + .-.......++.+-.+.++.....+-...-. .-.. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 443333211 1 1111122233333333333222222111110 1112 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC---hhH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGI--EPDA---ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS---TEH 652 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 652 (813)
.+.-++..+++.+++++|+.+...+....+ .++. ..-...+.++...+++..|...++.|...++...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 345567788899999999999988877532 2222 12234455777899999999999999877555444 556
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh-CcCCCh-HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKEL-GEEGNV-LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
|++....+.+.|+-.-=.+++..+ ...++. +.....-+.-....+.+.-|...+-++....|++ |....++|-++
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~--Pl~nl~lglaf 784 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS--PLINLCLGLAF 784 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC--cHHHHHHHHHH
Confidence 666666666666544444554443 222222 1111112233344567888999999999999998 77777665543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-11 Score=123.54 Aligned_cols=580 Identities=12% Similarity=0.070 Sum_probs=376.5
Q ss_pred CCcchHHHhhhcC---CCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHH
Q 046631 53 GRPHLARQLFDSI---TRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAV 129 (813)
Q Consensus 53 g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 129 (813)
|++..|+.++.+- ...+-..|---+ +-..++.|..+........ |. ++..| +.|.--..+...-.++
T Consensus 299 gKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~Avr~~--P~-Sv~lW---~kA~dLE~~~~~K~RV 368 (913)
T KOG0495|consen 299 GKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVANAVRFL--PT-SVRLW---LKAADLESDTKNKKRV 368 (913)
T ss_pred hHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHHHHHhC--CC-Chhhh---hhHHhhhhHHHHHHHH
Confidence 9999999988643 234444453322 2234556666666666543 22 22222 2222122233334455
Q ss_pred HHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhH
Q 046631 130 HCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVE 209 (813)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (813)
+...++. ++.++..|...+.. ...++|+-++.+..+--+ +-..|..+|++..-|+.
T Consensus 369 lRKALe~-iP~sv~LWKaAVel----------------------E~~~darilL~rAveccp-~s~dLwlAlarLetYen 424 (913)
T KOG0495|consen 369 LRKALEH-IPRSVRLWKAAVEL----------------------EEPEDARILLERAVECCP-QSMDLWLALARLETYEN 424 (913)
T ss_pred HHHHHHh-CCchHHHHHHHHhc----------------------cChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 5555544 35556666665543 444456666655543111 11223445556666777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHH----HHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 046631 210 AVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLL----VKLGSEYVNDLFVASSAIFMYAELGCFDFARKI 285 (813)
Q Consensus 210 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 285 (813)
|..++...++. ++-+...|.+....--..|+.+...++.+.. ...|+. .+..-|-.=...+-+.|
T Consensus 425 AkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~--i~rdqWl~eAe~~e~ag-------- 493 (913)
T KOG0495|consen 425 AKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE--INRDQWLKEAEACEDAG-------- 493 (913)
T ss_pred HHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee--ecHHHHHHHHHHHhhcC--------
Confidence 77777777664 4445555655555445666666666665543 334544 33333322222222222
Q ss_pred HhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchh
Q 046631 286 FDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPV 365 (813)
Q Consensus 286 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 365 (813)
.+.|..++|.+..--|.-++- -..|+..--..|.+.+.++-+..++...++-+
T Consensus 494 -------sv~TcQAIi~avigigvEeed---------------~~~tw~~da~~~~k~~~~~carAVya~alqvf----- 546 (913)
T KOG0495|consen 494 -------SVITCQAIIRAVIGIGVEEED---------------RKSTWLDDAQSCEKRPAIECARAVYAHALQVF----- 546 (913)
T ss_pred -------ChhhHHHHHHHHHhhccccch---------------hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-----
Confidence 233333333332222211100 11233444444555555555555555555422
Q ss_pred hhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc
Q 046631 366 IVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE 445 (813)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (813)
+.+...|...+..=-..|..+.-..+|++.... ++-....|.....-.-..|+...|..++..+.+..+...
T Consensus 547 -------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse 618 (913)
T KOG0495|consen 547 -------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE 618 (913)
T ss_pred -------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH
Confidence 223455666665556667778888888888776 222333444444445566888888888888888888866
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhc
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV-TIASVLPACN 524 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~ 524 (813)
.++.+-+..-.....++.|..+|.+.....|....|.--+..---.++.++|++++++.++. -|+.. .|..+-..+-
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 88888899999999999999999998877888888888887778889999999999988874 56654 4555556667
Q ss_pred cCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--C-CCHhHHHHHHHHHHhcCChHHHHHH
Q 046631 525 PMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--E-KNSVTYTTMILGYGQHGMSERALSL 601 (813)
Q Consensus 525 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~ 601 (813)
+.++++.|...|..=.+. ++..+-.|-.|...=-+.|.+-+|..+|++.. . .|...|-..|..-.+.|+.+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 777777777665543332 23455678888888889999999999999876 3 3788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCC
Q 046631 602 FRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEG 680 (813)
Q Consensus 602 ~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 680 (813)
..+.++. ++.+...|..-|...-+.++-......+ . ..+.|+.+...+..++....++++|.+.|.+. ...|
T Consensus 776 makALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL---k---kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 776 MAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL---K---KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH---H---hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9988875 4556667888887776666644444433 2 45678888899999999999999999999987 6678
Q ss_pred ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHH
Q 046631 681 NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVL 724 (813)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~ 724 (813)
+..++|..+...+.++|.-+.-.+++.+....+|.. ...+..
T Consensus 849 d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h--G~~W~a 890 (913)
T KOG0495|consen 849 DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH--GELWQA 890 (913)
T ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC--CcHHHH
Confidence 888899999999999999999999999999999987 544443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-13 Score=130.11 Aligned_cols=480 Identities=13% Similarity=0.089 Sum_probs=288.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Q 046631 197 IVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFV-NVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAE 275 (813)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 275 (813)
|..-|..+..+.+|+..++-+.+...-|+.-... .+-+.+.+.+.+..|.++|+..+..-+. .+..+.
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps--ink~~r--------- 275 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS--INKDMR--------- 275 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc--cchhhH---------
Confidence 3455666677778888888777666666654322 2333445566677777777766655433 111111
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHH
Q 046631 276 LGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAY 355 (813)
Q Consensus 276 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 355 (813)
+...|.+--.+.+.|.+++|+..|+..|.. .|+-.+-..++-++...|+.+..++.|..
T Consensus 276 ------------------ikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~k 334 (840)
T KOG2003|consen 276 ------------------IKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQK 334 (840)
T ss_pred ------------------HHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHH
Confidence 112222333355666666666666555543 35555544444445555666666666666
Q ss_pred HHH--hcccchhhhhccCCCCCcchHHHHHH-----HHHHCC--CcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCC
Q 046631 356 IIK--NFVALPVIVLNAVIERDVVSWNTMIS-----AFVQNG--LDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRN 426 (813)
Q Consensus 356 ~~~--~~~~~~~~~~~~~~~~~~~~~~~li~-----~~~~~g--~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 426 (813)
++. +...++.++. .-..|+....|..|. ..-+.. +.++++-.--.+..--+.||-.
T Consensus 335 li~ip~~~dddkyi~-~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-------------- 399 (840)
T KOG2003|consen 335 LIDIPGEIDDDKYIK-EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-------------- 399 (840)
T ss_pred HhcCCCCCCcccccC-CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh--------------
Confidence 665 3333311211 112233333333222 111111 1122222222222211222211
Q ss_pred hHHHHH-HHHHHHHhCCCCc--chHHHHHHHHHhcCCHHHHHHHHhhcCCCCC---ChhhHHHHHHHHHhCC-ChHHHHH
Q 046631 427 QDVGKQ-THAYLLRHGIHFE--GMESYLIDMYAKSGLIKTARQIFEKNDSGDR---DQATWNAMIAGYTQNG-LLEEAFV 499 (813)
Q Consensus 427 ~~~a~~-~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~A~~ 499 (813)
.+-. .++.+......+- .+-..-..-|.+.|+++.|+++++-..+.+. +...-|.-+--|.+.| ++..|..
T Consensus 400 --~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 400 --AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred --cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 1111 1111111111000 1112234457899999999999887763322 1122222233344433 4566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---C
Q 046631 500 AFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---E 576 (813)
Q Consensus 500 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~ 576 (813)
.-+...... .-+......--+.....|+++.|...+.+.....-.-....|| +.-.+-+.|++++|++.|-++. .
T Consensus 478 yad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 478 YADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 555444321 1122222222223345789999999999988764332233333 2334778999999999998765 4
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 046631 577 KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCC 655 (813)
Q Consensus 577 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 655 (813)
.+......+.+.|-...+..+|++++-+.... ++.|+..+.-|...|-+.|+-.+|.+.+-.- |...| +..+...
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iew 631 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEW 631 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHH
Confidence 67888888899999999999999999988874 5667778999999999999999999876544 35566 6999999
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHH-HHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSC-RLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG 733 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 733 (813)
|..-|....-+++|+.+|++. ..+|+.. -|..++..| ++.|++++|...++......|.+ ...+-.|..+....|
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsgnyqka~d~yk~~hrkfped--ldclkflvri~~dlg 708 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED--LDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc--hHHHHHHHHHhcccc
Confidence 999999999999999999997 4677777 898887666 56799999999999999999999 888888888776665
Q ss_pred C
Q 046631 734 N 734 (813)
Q Consensus 734 ~ 734 (813)
-
T Consensus 709 l 709 (840)
T KOG2003|consen 709 L 709 (840)
T ss_pred c
Confidence 3
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-12 Score=132.41 Aligned_cols=630 Identities=11% Similarity=0.017 Sum_probs=326.2
Q ss_pred ccccccCCCCCCCCchhhhHHHHHhhc-CCcchHHHhhhcCCCC----CcchHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 046631 26 QIHSLSPPIPKLKTPTIRSRLSKICQE-GRPHLARQLFDSITRP----TTVIWNTIIIGFVCNNLPYEAILLYSQMKKSS 100 (813)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 100 (813)
.++..+...|+.|....+.+++.-|+. |+.+.|. +|..|.-. +-..++.++.+..+.++.+.+-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 344555667888888889999999998 9999888 88777542 3346888888888877765443
Q ss_pred CCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHH-------hCC-----------------CCCh----------hHhh
Q 046631 101 PYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIR-------CFS-----------------NPSR----------FVYN 146 (813)
Q Consensus 101 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~-----------------~~~~----------~~~~ 146 (813)
.|...||..|+.+|.+.||+..-..+-+.+.. .|+ -||. ..|.
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 44667999999999999987653222221211 111 1111 0112
Q ss_pred HHHHHhhcCCCchhh-hh-hhhcccccCCCChhHHHHHHcccC-CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 046631 147 SLLNMYSTCLSSLDA-EM-VGLKYVEVDYSKYDLVCKVFDTMR-RRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIR 223 (813)
Q Consensus 147 ~li~~~~~~~~~~~a-~~-~~~~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 223 (813)
.++....++.....- -. +.++-....+..+++-........ .++..+|..++.+-..+|+.+.|..++..|++.|+.
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 222222111000000 00 000001111222222222222222 267788999999989999999999999999999998
Q ss_pred CCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHH
Q 046631 224 PSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGG 303 (813)
Q Consensus 224 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 303 (813)
.+..-|-.++-+ .++...+..+.+-|.+.|+. |+..++..-+-.....|....+....+.-..-....+..+.++
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~--p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQ--PGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCC--CCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 888877777654 78888888999999999988 9888887666555554432222111110000000111111111
Q ss_pred ---------------------------------------HHhCCCchHHHHHHHHHHHhC--CCCC-ChhhHHHHHHHhc
Q 046631 304 ---------------------------------------YVQNNHPVEAIELFVQVLELD--EIVF-DDVTFLSALSAVS 341 (813)
Q Consensus 304 ---------------------------------------~~~~g~~~~A~~~~~~~m~~~--g~~p-~~~t~~~ll~~~~ 341 (813)
...+|.-++..++. ..|..- .+.+ +...|...+.-
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlv-g~l~npt~r~s~~~V~a~~~~lrq-- 388 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLV-GQLLNPTLRDSGQNVDAFGALLRQ-- 388 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHH-hhhcCCccccCcchHHHHHHHHHH--
Confidence 11123333333333 222110 0111 01112222221
Q ss_pred ccCcchHHHHHHHHHHHhcccchhhhhccC------------------CCC-----------------Cc----------
Q 046631 342 QLQELDLGQQLHAYIIKNFVALPVIVLNAV------------------IER-----------------DV---------- 376 (813)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------------------~~~-----------------~~---------- 376 (813)
.|.++.+-....+..++..+ ..| ..
T Consensus 389 ----------yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 389 ----------YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred ----------HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 11111110000000000000 000 00
Q ss_pred -chHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCc-chHHHHH
Q 046631 377 -VSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGI--HFE-GMESYLI 452 (813)
Q Consensus 377 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~-~~~~~l~ 452 (813)
..-+.++..++..-+..+++..-+.....-+ + ..|..||.-++.....+.|..+.++...... ..+ ..+..+.
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 1112233334443344444333222222111 1 3466666666666667777666666654432 223 4556667
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC---CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC
Q 046631 453 DMYAKSGLIKTARQIFEKNDSG---DRD-QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN 528 (813)
Q Consensus 453 ~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 528 (813)
+...+.+...++..+++++.+. .|+ ..+.-.++..-+..|+.+...++++-+...|+.-+ ..++....+.++
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd 611 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDD 611 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccc
Confidence 7777777777777777665532 121 12334455555666776666666666655554331 122223333344
Q ss_pred hHHHHHHHHH-----------------HHHcCCCCchhHH---HHHHHHHHhcCCHHHHHHHHhhCC---C-C-------
Q 046631 529 IELGKQLHGF-----------------SIRYLLDQNVFVG---TSLIDMYSKSGVINYAANVFAKIP---E-K------- 577 (813)
Q Consensus 529 ~~~a~~~~~~-----------------~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~---~-~------- 577 (813)
...+.+.++. +...+-.-++... ..=+..|.++|+..+|.++.+.-. + +
T Consensus 612 ~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de 691 (1088)
T KOG4318|consen 612 QSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDE 691 (1088)
T ss_pred hhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCcccccc
Confidence 4444433332 2222111111111 111234777888877777766422 0 0
Q ss_pred --------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHH
Q 046631 578 --------------NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG---LVDEGLQIFDLM 640 (813)
Q Consensus 578 --------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~ 640 (813)
+.....-|+..|.+.|+++.|..+|.++. +.|+..+...|+..+.+.. ++.++....++.
T Consensus 692 ~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~eka 768 (1088)
T KOG4318|consen 692 GEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKA 768 (1088)
T ss_pred CccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHH
Confidence 11122347788999999999999999998 7888888888877766543 455555555555
Q ss_pred HHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCC--ChHHHHHHHHHHHHHhC
Q 046631 641 QQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEG--NVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 641 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 697 (813)
.+.+...|. ...|.--+...++....+.|.+.+.+..++. ...+.+..+++++....
T Consensus 769 s~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 769 SELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred HhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 443333343 3333333444455556668889998885543 33445666666665443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-15 Score=148.63 Aligned_cols=256 Identities=16% Similarity=0.140 Sum_probs=115.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIAS-VLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGV 563 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 563 (813)
...+.+.|++++|++++++.......|+...|-. +...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 3444455555555555543332221233333222 222333445555555555555544322 34445666666 68888
Q ss_pred HHHHHHHHhhCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 046631 564 INYAANVFAKIP--EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCG-IEPDAITFVAVLSACSYAGLVDEGLQIFDLM 640 (813)
Q Consensus 564 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 640 (813)
+++|.++++..- .++...+..++..+...++++++.++++++.... .+.+...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887664 3567778888889999999999999999987643 3456667888888999999999999999999
Q ss_pred HHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcC-CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Q 046631 641 QQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEE-GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM 718 (813)
Q Consensus 641 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 718 (813)
.+. .|+ ......++..+...|+.+++.++++..... |..+..|..+..++...|+.++|...+++++...|++
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-- 247 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-- 247 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT---
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc--
Confidence 965 785 888899999999999999988888877433 4455589999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 719 PGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 719 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+.....+++++...|+.++|..++++..+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-12 Score=123.55 Aligned_cols=434 Identities=12% Similarity=0.129 Sum_probs=292.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHH-HHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcc
Q 046631 299 TMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFL-SALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVV 377 (813)
Q Consensus 299 ~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (813)
.|.+-|..+....+|+..| +.+.+..+-|+...+. .+-..+.+.+.+..|.++++......+.-. ...-+.
T Consensus 206 nlaqqy~~ndm~~ealnty-eiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin-------k~~rik 277 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTY-EIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN-------KDMRIK 277 (840)
T ss_pred HHHHHhhhhHHHHHHhhhh-hhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-------hhhHHH
Confidence 3556677778888999999 7777777777766543 233455677778888888877766221110 011123
Q ss_pred hHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-c--------hH
Q 046631 378 SWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-G--------ME 448 (813)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~--------~~ 448 (813)
..+.+-..|.+.|+++.|+..|+...+. .|+-.+-..|+-++...|+-+...+.|..++.....++ . ..
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4555566788999999999999998775 68887777777777788999999999999887543222 1 11
Q ss_pred HHHHHHHHhcC--------CHHHHHHHHh---hcC--CCCCChhh---H----------H--------HHHHHHHhCCCh
Q 046631 449 SYLIDMYAKSG--------LIKTARQIFE---KND--SGDRDQAT---W----------N--------AMIAGYTQNGLL 494 (813)
Q Consensus 449 ~~l~~~~~~~g--------~~~~A~~~~~---~~~--~~~~~~~~---~----------~--------~li~~~~~~~~~ 494 (813)
..|+.--.+.. +-..|.+..- ++. -..|+... | . .-..-|.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222222211 1112222221 111 11222110 1 0 112347899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH--HHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 046631 495 EEAFVAFRQMLEHNVTPNVVTIA--SVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFA 572 (813)
Q Consensus 495 ~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (813)
+.|+++++-+.+..-+.-...-+ ..+.-+....++..|.++-+...... .-+....+.-...-...|++++|.+.|+
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 99999998877654332222222 22222222345666666655544321 1111112222223345789999999999
Q ss_pred hCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-
Q 046631 573 KIPEKNSVTYTTMI---LGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP- 648 (813)
Q Consensus 573 ~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p- 648 (813)
+....|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+.. .+.|
T Consensus 515 eal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~ 590 (840)
T KOG2003|consen 515 EALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPN 590 (840)
T ss_pred HHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCC
Confidence 99987765544443 3567889999999999887653 34456677788889999999999999987776 6677
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHH-HHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEF-VKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSN 727 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~ 727 (813)
|+..+..|.++|-+.|+-..|.+. ++.-.--|-..++...|...|....-.++++..++++--+.|.. ..+..+++.
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~--~kwqlmias 668 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ--SKWQLMIAS 668 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH--HHHHHHHHH
Confidence 599999999999999999999987 44445566666677888888888888999999999999999998 788888999
Q ss_pred HHHhcCCcHHHHHHHHHHHHCC
Q 046631 728 IYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
++.+.|++..|.++++....+-
T Consensus 669 c~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhC
Confidence 9999999999999999988653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-11 Score=117.20 Aligned_cols=284 Identities=13% Similarity=0.084 Sum_probs=197.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC-CCChhhH-HHHHHHHHhCCChHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHhccCC
Q 046631 452 IDMYAKSGLIKTARQIFEKNDSG-DRDQATW-NAMIAGYTQNGLLEEAFVAFRQMLEHNV-T-PNVVTIASVLPACNPMG 527 (813)
Q Consensus 452 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~-~-p~~~t~~~ll~~~~~~~ 527 (813)
..+|-.....+++..-.+...+. -|+..-+ +....+.-...++++|+.+|+++.+... . -|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 33444444444444444443322 2322222 2222333445566666666666665421 0 13445555543322211
Q ss_pred ChH-HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHH
Q 046631 528 NIE-LGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFR 603 (813)
Q Consensus 528 ~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (813)
.+. .|..++ .-..+ -+.+...+.+.|+-.++.++|...|++..+ .....|+.|..-|...++...|++-++
T Consensus 314 kLs~LA~~v~---~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 KLSYLAQNVS---NIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHH---HhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 111 011111 11122 234566777888889999999999998874 356789999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCCh
Q 046631 604 SMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGEEGNV 682 (813)
Q Consensus 604 ~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 682 (813)
..++-+ +-|-..|..|..+|...+...-|+-+|++.. .++| |.+.|.+|+++|.+.++.++|++-|++.-.-++.
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 999942 4466799999999999999999999999988 6788 5999999999999999999999999998554443
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-------CCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 683 -LEIWGSLLGSCRLHGHSELAEVVAKKLLE-------MDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 683 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
..++..|+..+.+.++.++|...+++.++ .+|.- ..+...|+.-+.+.+++++|..+-....
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t--~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET--IKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH--HHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 33899999999999999999999999887 33332 4556678888999999999998776655
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-11 Score=130.37 Aligned_cols=278 Identities=10% Similarity=0.012 Sum_probs=195.1
Q ss_pred cCCHHHHHHHHhhcCCCCCChhhHHHH-HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHhccCCChHHHHH
Q 046631 458 SGLIKTARQIFEKNDSGDRDQATWNAM-IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIA--SVLPACNPMGNIELGKQ 534 (813)
Q Consensus 458 ~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~ 534 (813)
.|+++.|.+.+.......++...+..+ .....+.|+++.|.+.|.++.+. .|+...+. .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 477777777766654322223333222 33336677777777777777653 44443222 22445666777777777
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CH--------hHHHHHHHHHHhcCChHHHHHHHH
Q 046631 535 LHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK---NS--------VTYTTMILGYGQHGMSERALSLFR 603 (813)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~ 603 (813)
.++.+.+.. +-++.+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777776665 335667777888888888888888888777632 11 133344444444555666677777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCCh
Q 046631 604 SMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNV 682 (813)
Q Consensus 604 ~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 682 (813)
.+.+. .+.+......+..++...|+.++|..++++..+. .|+.... ++......|+.+++.+.+++. +.+|+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 3456678888889999999999999999888753 4555333 233334568999999998887 667888
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+..+..++..|...+++++|...++++++..|++ ..+..++.++.+.|+.++|..++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~---~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA---YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8788899999999999999999999999999985 5567899999999999999999987754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-09 Score=107.51 Aligned_cols=498 Identities=13% Similarity=0.113 Sum_probs=289.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 046631 194 WNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMY 273 (813)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 273 (813)
|--....--.++++..|..+|++.+... .-+...|.--+..-.+...+..|+.+++.++..-+. -| ..|-..+.+-
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR--Vd-qlWyKY~ymE 151 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR--VD-QLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch--HH-HHHHHHHHHH
Confidence 3333333344667777888888777643 334445555556656777777888888877776543 22 3344455555
Q ss_pred HhcCChHHHHHHHhhcC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHH
Q 046631 274 AELGCFDFARKIFDNCL--ERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQ 351 (813)
Q Consensus 274 ~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 351 (813)
-..|++..|+++|++-. +|+...|++.|..-.+-..++.|..+|.+... +.|+..+|.-....=-+.|....+.+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 56677788888877653 46777788888777777777777777743332 34666666555555555555555555
Q ss_pred HHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHH
Q 046631 352 LHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGK 431 (813)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 431 (813)
++..++.-+..+ .-+...+ .+...--.++..++.|.
T Consensus 229 VyerAie~~~~d---------~~~e~lf-----------------------------------vaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 229 VYERAIEFLGDD---------EEAEILF-----------------------------------VAFAEFEERQKEYERAR 264 (677)
T ss_pred HHHHHHHHhhhH---------HHHHHHH-----------------------------------HHHHHHHHHHHHHHHHH
Confidence 555554411111 0011111 11111222334445555
Q ss_pred HHHHHHHHhCCCCc--chHHHHHHHHHhcCCHHHHHHH--------HhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHH
Q 046631 432 QTHAYLLRHGIHFE--GMESYLIDMYAKSGLIKTARQI--------FEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVA 500 (813)
Q Consensus 432 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~--------~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~ 500 (813)
.+|...+.+-+... .++..+...--+-|+.....+. ++.+....| |-.+|--.+..-...|+.+...++
T Consensus 265 ~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~ 344 (677)
T KOG1915|consen 265 FIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRET 344 (677)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHH
Confidence 55555555544443 4444444444444443332222 122332234 666777777777777888888888
Q ss_pred HHHHHHCCCCCCH-------HHHHHHHHHh---ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH----HhcCCHHH
Q 046631 501 FRQMLEHNVTPNV-------VTIASVLPAC---NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMY----SKSGVINY 566 (813)
Q Consensus 501 ~~~m~~~~~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~ 566 (813)
|++.+.. ++|-. ..|.-+=-+| ....+++.+.++++..++ -++....++.-+=-+| .++.++..
T Consensus 345 yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ 422 (677)
T KOG1915|consen 345 YERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTG 422 (677)
T ss_pred HHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHH
Confidence 8877764 44422 1111111111 235677777777777776 2333444444443333 46778888
Q ss_pred HHHHHhhCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 046631 567 AANVFAKIP--EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEY 644 (813)
Q Consensus 567 A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 644 (813)
|.+++.... .|...+|...|..-.+.++++....++++.++-+ +-+..+|......-...|+.+.|..+|.-++..-
T Consensus 423 ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 423 ARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 888887766 4667778888888888888888888888888843 2344577777776777888888888888877652
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcC-CChHHHHHHHHHHHH-----HhC-----------CHHHHHHHHH
Q 046631 645 KIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEE-GNVLEIWGSLLGSCR-----LHG-----------HSELAEVVAK 707 (813)
Q Consensus 645 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~ 707 (813)
.+.--...|...|+-=...|.++.|..+++++... +... +|-++...-. +.+ +...|..+|+
T Consensus 502 ~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~ife 580 (677)
T KOG1915|consen 502 ALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFE 580 (677)
T ss_pred ccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHH
Confidence 22222555667777777888888888888887433 3444 7777665444 223 4567788888
Q ss_pred HHhc----CCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 708 KLLE----MDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 708 ~~~~----~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
++.. .+|.......+...-+.-...|...+...+-.+|.
T Consensus 581 rAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 581 RANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 7764 33432111111112222334465555555555554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.8e-11 Score=115.67 Aligned_cols=214 Identities=14% Similarity=0.124 Sum_probs=173.2
Q ss_pred cCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 046631 525 PMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSL 601 (813)
Q Consensus 525 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 601 (813)
-.|+.-.+..-++..+.....++. .|--+..+|....+.++-+..|++..+ .|+.+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 357778888888888876543332 266666779999999999999998773 4777888888888888999999999
Q ss_pred HHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-Cc
Q 046631 602 FRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GE 678 (813)
Q Consensus 602 ~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 678 (813)
|++.++ +.|+.. .|..+.-+..+.+.++++...|++.+++ -|+ ++.|+....++...+++++|.+.|+.. ..
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999998 566544 6777777777899999999999999977 476 899999999999999999999999986 33
Q ss_pred CCC--------hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 679 EGN--------VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 679 ~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+|. .+.+..+++ .++-.+|+.+|+.+++++++++|.. -..|..|+.+-...|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkc--e~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKC--EQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 332 221333333 3334589999999999999999998 88999999999999999999999998764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-12 Score=132.47 Aligned_cols=277 Identities=13% Similarity=0.030 Sum_probs=202.3
Q ss_pred CCHHHHHHHHhhcCCCCCChh-hHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHhccCCChHHHHHH
Q 046631 459 GLIKTARQIFEKNDSGDRDQA-TWNAMIAGYTQNGLLEEAFVAFRQMLEHN--VTPNVVTIASVLPACNPMGNIELGKQL 535 (813)
Q Consensus 459 g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~ 535 (813)
-+..+|...|..++...+|+. ....+..+|...+++++|.++|+...+.. ..-+..+|++++..+-+.- +...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 356789999999876667665 34566788999999999999999988742 1125567777776543321 1222
Q ss_pred HH-HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 046631 536 HG-FSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE 611 (813)
Q Consensus 536 ~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 611 (813)
+. .+.+. -+-.+.+|.++..+|.-+++.+.|++.|++..+ | ...+|+.+..-+.....++.|...|+..+. +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 22 22222 234567888888888888888888888888774 3 456777777778888888888888888775 45
Q ss_pred CCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHH
Q 046631 612 PDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGS 688 (813)
Q Consensus 612 p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~ 688 (813)
|... .|..+...|.+.++++.|.-.|+++. .+.|. .....+++..+.+.|+.|+|+++++++ ..+|..+..-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 5443 56667777888888888888888777 67884 777778888888888888888888886 344433334444
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 689 LLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 689 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
-+..+...+++++|...++++.++-|++ ...+.+++.+|.+.|+.+.|..-|.-|.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~e--s~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQE--SSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcch--HHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 5566666788888888888888888888 88888888888888888888887766663
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.4e-10 Score=107.98 Aligned_cols=449 Identities=10% Similarity=0.072 Sum_probs=284.4
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHH
Q 046631 70 TVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLL 149 (813)
Q Consensus 70 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (813)
...|-....--..+++...|..+|++.+... . .+...|.--+..=.+...+..|..+++..+..-...|. .|-..+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd--~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ 148 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD--Y-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--c-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence 3345444455555678889999999998754 2 25666777778778888999999999988876433333 222222
Q ss_pred HHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccC--CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh
Q 046631 150 NMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMR--RRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI 227 (813)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 227 (813)
.+=-.. |++..|+++|++.. +|+..+|++.|.--.+-..++.|..++++..- +.|++.
T Consensus 149 ymEE~L------------------gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~ 208 (677)
T KOG1915|consen 149 YMEEML------------------GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVS 208 (677)
T ss_pred HHHHHh------------------cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHH
Confidence 222222 99999999999876 69999999999999999999999999999887 579999
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCC----C-CcchHHHHHH
Q 046631 228 SFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE----R-NTEVWNTMIG 302 (813)
Q Consensus 228 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~ 302 (813)
+|.--.+.--+.|....++++|..+++.-..-..+...+.+....-.++..++.|.-+|+-... . ....|..+..
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 9988888888999999999999988875422002334455555555567778888887764432 2 1233444443
Q ss_pred HHHhCCCchHHHHHHH--HHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHH
Q 046631 303 GYVQNNHPVEAIELFV--QVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWN 380 (813)
Q Consensus 303 ~~~~~g~~~~A~~~~~--~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (813)
.--+-|+.....+... +.++ ++...+. .+-|-.+|-
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~q------------------------------YE~~v~~------------np~nYDsWf 326 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQ------------------------------YEKEVSK------------NPYNYDSWF 326 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhH------------------------------HHHHHHh------------CCCCchHHH
Confidence 3334454444333320 1111 1111110 122344555
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHh-------HHHHHHHHH---hcCCChHHHHHHHHHHHHhCCCCcchHH-
Q 046631 381 TMISAFVQNGLDDEGLMLVYEMQKQGFMIDSV-------TVTALLSAA---SNLRNQDVGKQTHAYLLRHGIHFEGMES- 449 (813)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 449 (813)
-.+..--..|+.+...++|+..... ++|-.. .|.-+=-+| ....+.+.+.+++...++.-+.....+.
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAK 405 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHH
Confidence 5555555567777777777776654 344221 111111111 2345666677777766664333333332
Q ss_pred ---HHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 046631 450 ---YLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPM 526 (813)
Q Consensus 450 ---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 526 (813)
.....-.++.++..|.+++....+..|..-+|-..|..=.+.++++.+..+|++.++-+ +-+..++......=...
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHh
Confidence 23333456777888888888777767777778777877788888888888888888754 33555666666666667
Q ss_pred CChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHH
Q 046631 527 GNIELGKQLHGFSIRY-LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--KNSVTYTTMI 586 (813)
Q Consensus 527 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li 586 (813)
|+.+.|..+|...+.. .+......+.+.|+.=...|.++.|..+++++.+ +.+.+|-++.
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 7777777777776665 3344445566666666667777777777766663 2333454443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-11 Score=127.75 Aligned_cols=289 Identities=10% Similarity=-0.025 Sum_probs=204.0
Q ss_pred HCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHH
Q 046631 388 QNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQ 466 (813)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 466 (813)
-.|++++|.+.+....+..-.| ...|.....+....|+++.+...+..+.+...+.. .........+...|+++.|..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 3699999998887765542111 22333334445678888888888888877665554 333344677888888888888
Q ss_pred HHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCC
Q 046631 467 IFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLD 545 (813)
Q Consensus 467 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 545 (813)
.++++....| +......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence 8888776666 5667777788888888888888888888876543221 111000
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLS 622 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 622 (813)
...|..++.......+.+...++++.+. ..++.....+...+...|+.++|.+++++..+ ..|+.... ++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHH
Confidence 0122233333334445566666666665 34778888889999999999999999999887 35555322 233
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
+....++.+++.+..+...+. .|+ ...+.+++..+.+.|++++|.+.|+++ ...|+.. .+..+...+.+.|+.+
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPE 378 (398)
T ss_pred hhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHH
Confidence 444568999999999988865 575 777889999999999999999999987 4456666 7778899999999999
Q ss_pred HHHHHHHHHhcCC
Q 046631 701 LAEVVAKKLLEMD 713 (813)
Q Consensus 701 ~a~~~~~~~~~~~ 713 (813)
+|..++++.+.+-
T Consensus 379 ~A~~~~~~~l~~~ 391 (398)
T PRK10747 379 EAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-12 Score=131.31 Aligned_cols=279 Identities=15% Similarity=0.095 Sum_probs=173.4
Q ss_pred ChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC----ChhhHHHHHHHHHhCCChHHHHHHH
Q 046631 426 NQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR----DQATWNAMIAGYTQNGLLEEAFVAF 501 (813)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~ 501 (813)
+..+|...|..+..+-.....+...+..+|...+++++|.++|+.+...+| +...|.+.+--+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 456666666663333333336666677777777777777777777665555 44556555432211 1122222
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCH
Q 046631 502 -RQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQ-NVFVGTSLIDMYSKSGVINYAANVFAKIPEKNS 579 (813)
Q Consensus 502 -~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (813)
+++.+. -+-.+.||..+-+.++-+++.+.|+..|+..++. +| ...+|+.+..-+....++|.|...|+.....|.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 222222 1334567777777777777777777777766654 23 456666666666677777777777777665544
Q ss_pred h---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHH
Q 046631 580 V---TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYC 654 (813)
Q Consensus 580 ~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 654 (813)
. +|.-|...|.++++++.|+-.|++..+ +.|.. +....+...+-+.|+.|+|+++++++. .++| |+..--
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~ 561 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKY 561 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHH
Confidence 4 344455667777777777777777776 44443 345555556667777777777777766 4455 344445
Q ss_pred HHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 655 CVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 655 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..+..+...+++++|+..+++++ ..|+...++..++..|.+.|+.+.|+.-|.-+.+++|..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 56666677777777777777763 345555567777777777777777777777777777764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-10 Score=112.10 Aligned_cols=329 Identities=11% Similarity=0.015 Sum_probs=173.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Q 046631 197 IVSWYVKTERYVEAVRQFRMMLRMGIRPS-TISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAE 275 (813)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 275 (813)
.-.-|.++|++++|++.+.+.++ ..|| +.-|...-.+|...|+++.+.+-....++..+. -+..+..-..++-.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~---Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD---YVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH---HHHHHHHHHHHHHh
Confidence 34457788999999999999888 5788 667777777788899999998888888887743 35566666777777
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCc--------hHHHHHHHHHHH--hCCCCCChhhHHHHHHHhccc--
Q 046631 276 LGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHP--------VEAIELFVQVLE--LDEIVFDDVTFLSALSAVSQL-- 343 (813)
Q Consensus 276 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~m~--~~g~~p~~~t~~~ll~~~~~~-- 343 (813)
.|++++|+.=. |-.++..++....-. ..|....+..++ +..+.|+.....+.+..+...
T Consensus 196 lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 88888775321 222222222222111 122222222333 223455555444444433211
Q ss_pred ------Cc-chHHH-HHHHHHHHh----cccchhhh------hccCCCCC---------cchHHHHHHHHHHCCCcHHHH
Q 046631 344 ------QE-LDLGQ-QLHAYIIKN----FVALPVIV------LNAVIERD---------VVSWNTMISAFVQNGLDDEGL 396 (813)
Q Consensus 344 ------~~-~~~a~-~~~~~~~~~----~~~~~~~~------~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~ 396 (813)
++ -+... ..++.+.++ ........ ..+....+ ..+.......+.-.|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 11 01000 011111110 00000000 00000011 111111111223456666666
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC
Q 046631 397 MLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR 476 (813)
Q Consensus 397 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 476 (813)
.-|+..+.....++.- |.-+-.+|....+.+.....|....+.++....+|-.-..++.-.+++++|..-|++....+|
T Consensus 347 ~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 6666666654333221 545555566666666666666666666666666666666666666666666666666655555
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 046631 477 -DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIR 541 (813)
Q Consensus 477 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 541 (813)
++..|-.+.-+.-+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.++..++
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 4455555555555566666666666666554 233334555555555555555555555555544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-10 Score=122.83 Aligned_cols=281 Identities=10% Similarity=0.009 Sum_probs=161.2
Q ss_pred cCCHHHHHHHHhhcCCCCCChh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhccCCChHHHHH
Q 046631 458 SGLIKTARQIFEKNDSGDRDQA-TWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV--TIASVLPACNPMGNIELGKQ 534 (813)
Q Consensus 458 ~g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~ 534 (813)
.|+++.|.+.+.+..+..|+.. .+-.....+.+.|+++.|.+.|.+..+.. |+.. ........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555544443333222 22222334444455555555555544321 2221 12222344444555555555
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHH----HHHHHHHhcCChHHHHHHHHHHHh
Q 046631 535 LHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYT----TMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
.++.+.+.. +-+..+...+...|...|++++|.+.+..+.+. +...+. ....++...+..+++.+.+.++.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555443 223345555566666666666666666555521 222221 111111222333333445555544
Q ss_pred CCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHHhccCCHHHHHHHHHHh-CcCC
Q 046631 608 CGI---EPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEH---YCCVADMLGRVGKVVEAYEFVKEL-GEEG 680 (813)
Q Consensus 608 ~g~---~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 680 (813)
... +.+...+..+...+...|+.++|.+.+++..+. .||... ...........++.+.+.+.+++. ...|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 321 125667777777888888888888888888754 455331 122222223457778888888775 5566
Q ss_pred ChH--HHHHHHHHHHHHhCCHHHHHHHHH--HHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 681 NVL--EIWGSLLGSCRLHGHSELAEVVAK--KLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 681 ~~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+.+ ....++++.|.+.|++++|.+.++ .+++..|++ ..+..++.++.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~---~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA---NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666 688899999999999999999999 577788875 4466899999999999999999988653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-09 Score=110.30 Aligned_cols=263 Identities=11% Similarity=0.031 Sum_probs=193.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
++........-+-..+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+.+. .+..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44444444555555566666666666655532 333333333344444444444433333333332 2335567778888
Q ss_pred HHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046631 557 MYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEG 633 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a 633 (813)
.|.-.|+..+|.+.|.+...- =...|-.+...|+-.|..++|+..+...-+. ++-...-+..+..-|.+.++++-|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 888889999999999877632 3568999999999999999999999887763 122222334445568889999999
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhC--------cCC-ChHHHHHHHHHHHHHhCCHHHHH
Q 046631 634 LQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELG--------EEG-NVLEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~~l~~~~~~~g~~~~a~ 703 (813)
.++|.+.. ++.| |+..++-++-+....+.+.+|..+|+... +.+ -.+ +|+.|+.+|++.+.+++|+
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p-~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP-TLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH-HHHhHHHHHHHHhhHHHHH
Confidence 99999887 8889 58888899999999999999999988752 111 223 7899999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 704 VVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..+++++.+.|++ +.+|..+|.+|...|+.+.|.+.|.+....
T Consensus 476 ~~~q~aL~l~~k~--~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 476 DYYQKALLLSPKD--ASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHcCCCc--hhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9999999999999 999999999999999999999999998743
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-10 Score=119.41 Aligned_cols=289 Identities=11% Similarity=0.001 Sum_probs=196.2
Q ss_pred HHCCCcHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHH
Q 046631 387 VQNGLDDEGLMLVYEMQKQGFMIDSV-TVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTA 464 (813)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 464 (813)
...|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+...+....+..+... .+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4678999999999887665 35433 333444566677888888888888776665554 4555567777778888888
Q ss_pred HHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcC
Q 046631 465 RQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYL 543 (813)
Q Consensus 465 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 543 (813)
...++.+.+..| +...+..+...|.+.|++++|.+.+..+.+.++. +...+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH----------------------
Confidence 888887776666 5556777778888888888888888888776533 2222111000
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HH
Q 046631 544 LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAIT--FV 618 (813)
Q Consensus 544 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~ 618 (813)
..+..++..-......+...+.++...+ .+...+..++..+...|+.++|.+++++..+. .||... +.
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0111111111122223444445555542 47788888889999999999999999999884 444442 11
Q ss_pred HH-HHHHhccCcHHHHHHHHHHHHHhcCCCCC-h--hHHHHHHHHHhccCCHHHHHHHHHH--h-CcCCChHHHHHHHHH
Q 046631 619 AV-LSACSYAGLVDEGLQIFDLMQQEYKIQPS-T--EHYCCVADMLGRVGKVVEAYEFVKE--L-GEEGNVLEIWGSLLG 691 (813)
Q Consensus 619 ~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~~l~~ 691 (813)
.+ .......++.+.+.+.++...+. .|+ + ....+++..+.+.|++++|.+.|+. . ...|+.. .+..+..
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ 378 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAAD 378 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHH
Confidence 11 12234457788888888888755 564 4 6677899999999999999999993 3 4567666 5778999
Q ss_pred HHHHhCCHHHHHHHHHHHhc
Q 046631 692 SCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 692 ~~~~~g~~~~a~~~~~~~~~ 711 (813)
.+.+.|+.++|.+++++.+.
T Consensus 379 ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.4e-10 Score=109.04 Aligned_cols=255 Identities=12% Similarity=0.107 Sum_probs=204.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcC
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLL--DQNVFVGTSLIDMYSKSG 562 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g 562 (813)
..+|-.....++++.-.+.....|+.-+...-+....+.....++++|+.+|+++.+... --|..+|+.++-.-..+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345555567788888888888887655555555555556677899999999999998732 126677777664433322
Q ss_pred CHHH-HHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHH
Q 046631 563 VINY-AANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLM 640 (813)
Q Consensus 563 ~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~ 640 (813)
.+.- |..++ .+.+-.+.|..++.+-|.-.++.++|+..|++.++ +.|... .|+.+..-|....+...|++-++.+
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 3222 22222 23333566777788889999999999999999999 556554 6766777899999999999999999
Q ss_pred HHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Q 046631 641 QQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM 718 (813)
Q Consensus 641 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 718 (813)
+ .+.| |-+.|-.|+.+|.-.+...=|+-+|++. ...|+...+|.+|+.+|.+.++.++|+..|++++..+..+
T Consensus 391 v---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-- 465 (559)
T KOG1155|consen 391 V---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-- 465 (559)
T ss_pred H---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc--
Confidence 8 6788 7999999999999999999999999987 6778887799999999999999999999999999988777
Q ss_pred chhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 719 PGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 719 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
...+.-|+++|.+.++.++|...+++-.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88999999999999999999999998875
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.44 E-value=5e-13 Score=134.25 Aligned_cols=253 Identities=16% Similarity=0.158 Sum_probs=107.1
Q ss_pred HHHHHHhcCCHHHHHHHHhh-cCCC-CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 046631 451 LIDMYAKSGLIKTARQIFEK-NDSG-DR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMG 527 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~-~~~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 527 (813)
+..++.+.|++++|.+++++ .... .| |...|..+.......++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 46667777888888888854 3333 23 4455666666666778888888888888765422 34445555555 5777
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 046631 528 NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP-----EKNSVTYTTMILGYGQHGMSERALSLF 602 (813)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 602 (813)
++++|..+.....+.. ++...+..++..+.+.|+++++.++++.+. +.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888887776655443 455567778888888999999988888754 346778888899999999999999999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCC
Q 046631 603 RSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEG 680 (813)
Q Consensus 603 ~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 680 (813)
++.++ ..|+ ......++..+...|+.+++.+++....+. . ..|...+..++.+|...|+.++|+.++++. ...|
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-C-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99998 5665 557778888899999999999988888765 2 345777888999999999999999999987 4477
Q ss_pred ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 681 NVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
+.+.+...+..++...|+.++|..+.++++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 7776888899999999999999999888765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-08 Score=102.64 Aligned_cols=282 Identities=12% Similarity=0.139 Sum_probs=147.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCCC-CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSGD-RDQ----ATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVL 520 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll 520 (813)
.++..+.+.|-..|+++.|..+|++..... +.+ .+|-.....=.++.+++.|+.+.+.... .|.... +
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~ 460 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L 460 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h
Confidence 345667888888888888888888766332 221 2455555556677788888887766553 333211 1
Q ss_pred HHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHH
Q 046631 521 PACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSER 597 (813)
Q Consensus 521 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 597 (813)
.+.+.+..-++. +| .+..+|.-.++.--..|-++....+++++.+- .+..--....-+-.+.-+++
T Consensus 461 -~~yd~~~pvQ~r-lh---------rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 461 -EYYDNSEPVQAR-LH---------RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred -hhhcCCCcHHHH-HH---------HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHH
Confidence 111122111111 11 13334555555555666666666666666532 12111122222334555667
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHhc---cCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHH
Q 046631 598 ALSLFRSMKGCGIEPDAI-TFVAVLSACSY---AGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYE 671 (813)
Q Consensus 598 A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 671 (813)
+.++|++-+..-..|+.. .|+..+.-+.+ ..+++.|..+|++..+ |..|. -..|......=.+-|....|+.
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777776666553334433 45554443332 2356777777777765 55554 2222222233335566677777
Q ss_pred HHHHhCcCC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 672 FVKELGEEG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 672 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+++++...- +..+.|+..+.--...=-...-..+|+++++.-|+........-.+++=.+.|..+.|..++.--.+
T Consensus 608 iyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 608 IYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 777653222 2223555544333322223344566677777666653233333445666667777777777655544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-09 Score=105.42 Aligned_cols=297 Identities=15% Similarity=0.108 Sum_probs=239.4
Q ss_pred HHHHHHHHc--CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 046631 195 NTIVSWYVK--TERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFM 272 (813)
Q Consensus 195 ~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 272 (813)
..+..+..+ .|++.+|.++..+-.+.+-.| ...|.....+....|+.+.+-+++.++.+.... ++..+.-.....
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~--~~l~v~ltrarl 162 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD--DTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC--chHHHHHHHHHH
Confidence 344555443 799999999999987776433 346677777888999999999999999998655 788888899999
Q ss_pred HHhcCChHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChh-------hHHHHHHHhcc
Q 046631 273 YAELGCFDFARKIFDNCL---ERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDV-------TFLSALSAVSQ 342 (813)
Q Consensus 273 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~-------t~~~ll~~~~~ 342 (813)
....|+.+.|..-.++.. .++........+.|.+.|++.....++ ..|.+.|+--++. ++..++.-+..
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l-~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAIL-PKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHH-HHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 999999999998877654 457888999999999999999999999 8888888765543 67888888877
Q ss_pred cCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 046631 343 LQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAAS 422 (813)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 422 (813)
.+..+.-+..++...+. .+.+...-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.+.
T Consensus 242 ~~~~~gL~~~W~~~pr~------------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l 305 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK------------LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRL 305 (400)
T ss_pred cccchHHHHHHHhccHH------------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhc
Confidence 77777777777766553 233456667788889999999999999999999887776 22334566
Q ss_pred cCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 046631 423 NLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFR 502 (813)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 502 (813)
+.++.+.-.+..+...+.-+....+..+|...|.+.+.+.+|...|+...+..|+..+|+.+..+|.+.|+..+|.++++
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 77888888888888877776666888899999999999999999999877778899999999999999999999999988
Q ss_pred HHHHCCCCC
Q 046631 503 QMLEHNVTP 511 (813)
Q Consensus 503 ~m~~~~~~p 511 (813)
+....-..|
T Consensus 386 e~L~~~~~~ 394 (400)
T COG3071 386 EALLLTRQP 394 (400)
T ss_pred HHHHHhcCC
Confidence 876543333
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-08 Score=103.86 Aligned_cols=440 Identities=14% Similarity=0.074 Sum_probs=259.3
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 046631 261 NDLFVASSAIFMYAELGCFDFARKIFDNCLER---NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSAL 337 (813)
Q Consensus 261 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll 337 (813)
.|..+|..|.-+..++|+++.+.+.|++...- ....|+.+-..|...|.-..|+.+++..+....-++|...+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 68888888889999999999999999887543 556799999999999999999999865555544344444444444
Q ss_pred HHhc-ccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHH
Q 046631 338 SAVS-QLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTA 416 (813)
Q Consensus 338 ~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 416 (813)
..|. +.+..+++..+-..+++..... ........|-.+.-+|...-. .++..+-.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~-------~~~l~~~~~l~lGi~y~~~A~----------------~a~~~seR- 456 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQ-------RSHLKPRGYLFLGIAYGFQAR----------------QANLKSER- 456 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhh-------hhhhhhhHHHHHHHHHHhHhh----------------cCCChHHH-
Confidence 4443 3345555555444444310000 000111222222222211000 00000000
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCC--CChhhHHHHHHHHHhCCCh
Q 046631 417 LLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGD--RDQATWNAMIAGYTQNGLL 494 (813)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~ 494 (813)
.....++.+.++..++.++....+.-.+.--|+..++++.|.+..++..... -+...|.-|.-.+...+++
T Consensus 457 -------~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 457 -------DALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred -------HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 0012234455555555555555444445556777788888888877654432 3677888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 046631 495 EEAFVAFRQMLEHNVTPN-VVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAK 573 (813)
Q Consensus 495 ~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (813)
.+|+.+.+..... .|+ ..-...-+..-...++.+++......+... |... ......|+-....++...
T Consensus 530 ~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~ 598 (799)
T KOG4162|consen 530 KEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAG 598 (799)
T ss_pred HHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcc
Confidence 8888888776653 122 111111111112234555554443333221 0000 000011222223333333
Q ss_pred CC----C-CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC------HHHHHHHHHHHhccCcHHHHHHHHHH
Q 046631 574 IP----E-KN-SVTYTTMILGYGQHGMSERALSLFRSMKGCGIE--PD------AITFVAVLSACSYAGLVDEGLQIFDL 639 (813)
Q Consensus 574 ~~----~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~------~~~~~~ll~a~~~~g~~~~a~~~~~~ 639 (813)
+. + .+ +.++..+..-....+ +.+..-.. |...-+. |+ ...|......+...+..++|...+.+
T Consensus 599 l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 599 LHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred cccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 32 1 12 222322222211111 11100000 2211122 22 12455566678888999999887777
Q ss_pred HHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHH--HHHHHhcCCCC
Q 046631 640 MQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEV--VAKKLLEMDTR 715 (813)
Q Consensus 640 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~ 715 (813)
.. ++.|- ...|...+..+...|.+++|.+.|... ..+|+.+.+..++...+.+.|+-..|.. ++..+++++|.
T Consensus 676 a~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 676 AS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 76 56674 888888899999999999999887765 6777776699999999999998888877 99999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 716 NSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 716 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
+ +.++..+|.++.+.|+.++|.+-|....+...
T Consensus 753 n--~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 753 N--HEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred C--HHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 9 99999999999999999999999999887653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.8e-09 Score=101.09 Aligned_cols=288 Identities=10% Similarity=0.015 Sum_probs=172.0
Q ss_pred HCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHH
Q 046631 388 QNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQ 466 (813)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 466 (813)
-.|++.+|.++..+-.+.+-.| ...|..-.++.-..|+.+.+-..+.++-+...+++ .+.-+........|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3689999999999987776444 34455566777788889999888888888866666 777778888888888888888
Q ss_pred HHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCC
Q 046631 467 IFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLD 545 (813)
Q Consensus 467 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 545 (813)
-.+++.+..| +.........+|.+.|++..+..++.+|.+.|+--|...- ++
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l---------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL---------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH----------
Confidence 8887665555 6677788888888888888888888888887755443210 00
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLS 622 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 622 (813)
...+|+.+++-....+..+.-...++... +.++..-.+++.-+.+.|+.++|.++..+..+++..|+ ...+ -
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-I 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-H
Confidence 11123333333333333333334444443 23455555556666666666666666666666555554 1111 1
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 702 (813)
.+.+.++...-++..+...+. .|+.+..+.+|+..|.+++.+.+|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~-----------------------------------h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQ-----------------------------------HPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHh-----------------------------------CCCChhHHHHHHHHHHHhhHHHHH
Confidence 334445544444444444433 233333444555555555555555
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 703 EVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 703 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
...++.++...|+ ...+..+++++.+.|+.++|...+++..
T Consensus 348 ~~~leaAl~~~~s---~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 348 SEALEAALKLRPS---ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHhcCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5555555555444 3444455555555555555555544443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-10 Score=112.32 Aligned_cols=197 Identities=15% Similarity=0.121 Sum_probs=166.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA 623 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 623 (813)
....+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677888899999999999999997763 357788889999999999999999999999853 3345677788888
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHH
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (813)
+...|++++|.+.++++.+. ...| ....+..++.++...|++++|...+++. ...|+....|..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999864 2223 3667888999999999999999999887 3455555688899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
|...++++++..|.+ +..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQT--AESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999987776 78888889999999999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-08 Score=95.52 Aligned_cols=264 Identities=12% Similarity=-0.016 Sum_probs=193.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQA-TWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACN 524 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 524 (813)
.+...+.+.+...|+.++|+..|++....+|+.+ ......-.+.+.|+.++...+...+.... +-+..-|-.-.....
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhh
Confidence 4556788888999999999999998776677443 33333444567788888887777766532 112222222233344
Q ss_pred cCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--C-CCHhHHHHHHHHHHhcCChHHHHHH
Q 046631 525 PMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--E-KNSVTYTTMILGYGQHGMSERALSL 601 (813)
Q Consensus 525 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~ 601 (813)
...+.+.|..+-+..++..- .+...|-.-..++...|++++|.-.|+... . -+..+|.-|+..|...|++.+|.-+
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred hhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 56677788877777766532 123333334456778899999999998765 4 3789999999999999999999988
Q ss_pred HHHHHhCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-C
Q 046631 602 FRSMKGCGIEPDAITFVAVL-SACS-YAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-G 677 (813)
Q Consensus 602 ~~~m~~~g~~p~~~~~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 677 (813)
-+..... +..+..+.+.+. ..|. ....-++|.+++++.. .+.|+ ....+.+...+.+.|..++++.++++. .
T Consensus 391 An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 391 ANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 8877663 344555555542 2332 3334588999998877 66898 888889999999999999999999886 4
Q ss_pred cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 678 EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..++.. ..+.|+..+...+.+++|...|..++.++|++
T Consensus 467 ~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 467 IFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 556666 88999999999999999999999999999998
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-09 Score=98.75 Aligned_cols=299 Identities=16% Similarity=0.121 Sum_probs=167.7
Q ss_pred HHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-c---chHHHHHHHHHhcCCHH
Q 046631 387 VQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHF-E---GMESYLIDMYAKSGLIK 462 (813)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~ 462 (813)
.-+.+.++|.++|-+|.+.. +-+..+..+|.+.+.+.|..+.|+.+|..+.+..-.. . .+...|..-|...|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34678999999999998742 2223345567777888888888888888877653322 2 33456777788888888
Q ss_pred HHHHHHhhcCCC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 046631 463 TARQIFEKNDSG-DRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIR 541 (813)
Q Consensus 463 ~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 541 (813)
.|+.+|..+... .--......|+..|-+..+|++|+++-+++.+.+-.+..+- |
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----I--------------------- 179 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----I--------------------- 179 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----H---------------------
Confidence 888888877631 12344666777788888888888888777776553333221 1
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046631 542 YLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFV 618 (813)
Q Consensus 542 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 618 (813)
...|.-|...+....+++.|..++.+..+. .+..--.+...+...|+++.|++.++...+.+..--..+..
T Consensus 180 ------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 180 ------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred ------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 012333444444445555555555554421 22333334445555566666666666555543322233445
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCC
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGH 698 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 698 (813)
.|..+|.+.|+.+++..++.++.+. .+....-..+.+.- ....-
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~li---------------------------------e~~~G 297 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLI---------------------------------ELQEG 297 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHH---------------------------------HHhhC
Confidence 5555555555555555555555433 23332222333322 22222
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH--hcCCcHHHHHHHHHHHHCCCccCCc
Q 046631 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA--EEGNWENVDKVRKEMRERGLRKEVG 755 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~ 755 (813)
.+.|...+.+-+...|.- ...|.++..-+. ..|++.+...+++.|....++..|.
T Consensus 298 ~~~Aq~~l~~Ql~r~Pt~--~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 298 IDAAQAYLTRQLRRKPTM--RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred hHHHHHHHHHHHhhCCcH--HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 334444444444444443 333333322222 3356777777888887766665553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-06 Score=89.27 Aligned_cols=518 Identities=13% Similarity=0.147 Sum_probs=265.8
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHH
Q 046631 70 TVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLL 149 (813)
Q Consensus 70 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (813)
++.|-..+..+..+|+.......|...+..-| +.-....|...+.-....+-.+.+..++++.++. ++...+--|
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLp-vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALP-VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCc-hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 55677777778888888888888888776643 3335566777788777777777888888777654 333456667
Q ss_pred HHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCC----------CcccHHHHHHHHHcCCChhHHH---HHHHH
Q 046631 150 NMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRR----------NVVAWNTIVSWYVKTERYVEAV---RQFRM 216 (813)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~---~l~~~ 216 (813)
..+++. +++++|.+.+..+... +-..|..+-...+++-+.-.-+ .+++.
T Consensus 177 e~L~~~------------------d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~ 238 (835)
T KOG2047|consen 177 EYLAKS------------------DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRG 238 (835)
T ss_pred HHHHhc------------------cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHh
Confidence 777777 5565555555554321 1122333333333222211111 11111
Q ss_pred HHHCCCCCCHh--hHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhc------------------
Q 046631 217 MLRMGIRPSTI--SFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAEL------------------ 276 (813)
Q Consensus 217 m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~------------------ 276 (813)
+.. .-+|.. .|.+|.+-|.+.|.++.|..+|++....-. ++.-++.+.+.|+.-
T Consensus 239 gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~----tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 239 GIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM----TVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred hcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe----ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 111 122222 344444444444444444444444443321 111122222222110
Q ss_pred ----CChHHHHHHHhhcCC---------------CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCC---C-hhhH
Q 046631 277 ----GCFDFARKIFDNCLE---------------RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVF---D-DVTF 333 (813)
Q Consensus 277 ----g~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p---~-~~t~ 333 (813)
-+++....-|+.+.. .++..|..-+. +..|+..+-...|.+..+.-..+- . ...+
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw 390 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLW 390 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHH
Confidence 112223333333322 13444544333 345777788888855554322111 1 1235
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCC----
Q 046631 334 LSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFM---- 408 (813)
Q Consensus 334 ~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---- 408 (813)
..+-+.|-..|+++.|+.+|+...+ .+... ..=..+|-.....=.+..+++.|+++++....---.
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v---------~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTV---------EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccch---------HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 6677777888999999999998887 33221 011234555555556677788888877766532111
Q ss_pred -------CCHh------HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 046631 409 -------IDSV------TVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGD 475 (813)
Q Consensus 409 -------pd~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 475 (813)
+-.. .|...+..--..|-++..+.+|+.+++..+....+.......+-...-++++.+++++-...-
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 1111 122222222233455555666666666555544333223333344444555555555432221
Q ss_pred --CChh-hHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchh
Q 046631 476 --RDQA-TWNAMIAGYTQN---GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVF 549 (813)
Q Consensus 476 --~~~~-~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 549 (813)
|++. .||..+.-+.+. .+++.|..+|++.++ |++|...-+..++
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl----------------------------- 591 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL----------------------------- 591 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH-----------------------------
Confidence 2222 455544444331 234555555555555 3444332221111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH---
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPEK-----NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVL--- 621 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll--- 621 (813)
....=-+-|....|+.++++.... -...||..|.--...=-+.....+|++.++ .-|+...-...+
T Consensus 592 ----YA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFA 665 (835)
T KOG2047|consen 592 ----YAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFA 665 (835)
T ss_pred ----HHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHH
Confidence 111112346666777777766531 245677777665555555666777777777 466665433333
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCC
Q 046631 622 SACSYAGLVDEGLQIFDLMQQEYKIQP--STEHYCCVADMLGRVGK 665 (813)
Q Consensus 622 ~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 665 (813)
..-++.|.++.|..++..-.+ =..| +...|...=+-=.+.|+
T Consensus 666 dlEtklGEidRARaIya~~sq--~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 666 DLETKLGEIDRARAIYAHGSQ--ICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHhhhhhhHHHHHHHHHhhhh--cCCCcCChHHHHHHHHHHHhcCC
Confidence 344677888888888765543 2344 35566666666667777
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.4e-10 Score=115.47 Aligned_cols=245 Identities=18% Similarity=0.192 Sum_probs=163.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCC--------CCChh-hHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCH
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSG--------DRDQA-TWNAMIAGYTQNGLLEEAFVAFRQMLEH---NVTPNV 513 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~ 513 (813)
.+...+..+|...|+++.|..+|+..... .|.+. ..+.+...|...+++++|..+|+++..- ..-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44455777777777777777777653211 23332 2334566777777777777777776542 001111
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcC
Q 046631 514 VTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHG 593 (813)
Q Consensus 514 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 593 (813)
.. -..+++.|..+|.+.|++++|...+
T Consensus 280 ~~-------------------------------va~~l~nLa~ly~~~GKf~EA~~~~---------------------- 306 (508)
T KOG1840|consen 280 PA-------------------------------VAATLNNLAVLYYKQGKFAEAEEYC---------------------- 306 (508)
T ss_pred HH-------------------------------HHHHHHHHHHHHhccCChHHHHHHH----------------------
Confidence 11 1234566677788888888887775
Q ss_pred ChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhcC--CCCC----hhHHHHHHHHHhccCC
Q 046631 594 MSERALSLFRSMKGCGIEPDAI--TFVAVLSACSYAGLVDEGLQIFDLMQQEYK--IQPS----TEHYCCVADMLGRVGK 665 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~ 665 (813)
+.|++++++ ..|..+..+ -++.+...|+..+.+++|..++....+.+. ..++ ..+++.|+.+|...|+
T Consensus 307 --e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk 382 (508)
T KOG1840|consen 307 --ERALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK 382 (508)
T ss_pred --HHHHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc
Confidence 456666666 222222222 466677778888888888888887765543 2222 6788999999999999
Q ss_pred HHHHHHHHHHhC---------cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC----CCCC-CCchhHHHHHHHHHh
Q 046631 666 VVEAYEFVKELG---------EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM----DTRN-SMPGYHVLLSNIYAE 731 (813)
Q Consensus 666 ~~~A~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~-~~~~~~~~l~~~~~~ 731 (813)
+++|.++++++. ........++.|...|.+.++.+.|.++|.+...+ +|+. +....|.-|+.+|..
T Consensus 383 ~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~ 462 (508)
T KOG1840|consen 383 YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA 462 (508)
T ss_pred hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 999999998861 12232336788899999889999888888876643 4443 224567778999999
Q ss_pred cCCcHHHHHHHHHHHH
Q 046631 732 EGNWENVDKVRKEMRE 747 (813)
Q Consensus 732 ~g~~~~A~~~~~~m~~ 747 (813)
.|++++|.++.+....
T Consensus 463 ~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 463 QGNYEAAEELEEKVLN 478 (508)
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999888763
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-08 Score=100.70 Aligned_cols=285 Identities=12% Similarity=0.039 Sum_probs=170.5
Q ss_pred CCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHH
Q 046631 374 RDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLID 453 (813)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 453 (813)
.+........+-+...+++.+..++++...+.. ++....+..=|.++...|+...-..+-..+++.-+.....+-++.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 344555556667778889999999999888763 4455555555667777788777777777777777766666667777
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--C-CCCCHHHHHHHHHHhccCCCh
Q 046631 454 MYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEH--N-VTPNVVTIASVLPACNPMGNI 529 (813)
Q Consensus 454 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~-~~p~~~t~~~ll~~~~~~~~~ 529 (813)
.|.-.|+..+|.+.|.+....+| -...|-.+...|+-.|..++|+..|...-+. | ..|. ..+---|.+.++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~----LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS----LYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH----HHHHHHHHHhccH
Confidence 77777888888888887665555 4557888888888888888888887766552 1 1221 1122334445555
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCG 609 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 609 (813)
+.|.++|.+..... +.|+.+.+-+.-.....+.+.+|...|+....+ .+.....
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e- 450 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IKSVLNE- 450 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hhhcccc-
Confidence 55555555544321 224444444444444445555555554433200 0000000
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHH
Q 046631 610 IEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWG 687 (813)
Q Consensus 610 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 687 (813)
..--..+++.|..+|.+.+.+++|+..+++... ..| +..++..++.+|...|+++.|++.|.+. ...|+.. +-.
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~-~~~ 526 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI-FIS 526 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH-HHH
Confidence 001233566666666666666666666666653 234 4666666666666667777666666654 4445444 333
Q ss_pred HHHHHH
Q 046631 688 SLLGSC 693 (813)
Q Consensus 688 ~l~~~~ 693 (813)
.++..+
T Consensus 527 ~lL~~a 532 (611)
T KOG1173|consen 527 ELLKLA 532 (611)
T ss_pred HHHHHH
Confidence 444333
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=85.79 Aligned_cols=50 Identities=30% Similarity=0.601 Sum_probs=48.2
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhC
Q 046631 189 RNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSS 238 (813)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 238 (813)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-11 Score=85.03 Aligned_cols=50 Identities=38% Similarity=0.549 Sum_probs=48.4
Q ss_pred CCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 046631 374 RDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASN 423 (813)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 423 (813)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.9e-07 Score=92.13 Aligned_cols=441 Identities=15% Similarity=0.084 Sum_probs=264.6
Q ss_pred CCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHH
Q 046631 239 LGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLER---NTEVWNTMIGGYVQNNHPVEAIE 315 (813)
Q Consensus 239 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 315 (813)
.+++..+++..+.+++..++ ...+.....-.+...|+-++|.......... +.+.|..+.-.+-...++++|+.
T Consensus 20 ~kQYkkgLK~~~~iL~k~~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCc---cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 34555566666666554332 2222222222344456666776666655443 45667777777777777888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHH
Q 046631 316 LFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEG 395 (813)
Q Consensus 316 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 395 (813)
.|...+... +-|...+..+--.-++.|+++........+.+. .+.....|..+..++.-.|+...|
T Consensus 97 cy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql------------~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 97 CYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL------------RPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 875555432 223334444444445566666665555555441 123456788888899999999999
Q ss_pred HHHHHHHHHCC-CCCCHhHHHHHHH------HHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 046631 396 LMLVYEMQKQG-FMIDSVTVTALLS------AASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIF 468 (813)
Q Consensus 396 ~~~~~~m~~~g-~~pd~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 468 (813)
..++++..+.- -.|+...|..... .....|.++.+.+.+......-.+.-...-.-.+.+.+.+++++|..++
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99999988764 2466665543322 2445677777766655544333322244456778889999999999999
Q ss_pred hhcCCCCCChhhHHHHH-HHHHhCCChHHHH-HHHHHHHHC---CCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcC
Q 046631 469 EKNDSGDRDQATWNAMI-AGYTQNGLLEEAF-VAFRQMLEH---NVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYL 543 (813)
Q Consensus 469 ~~~~~~~~~~~~~~~li-~~~~~~~~~~~A~-~~~~~m~~~---~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 543 (813)
..+....||...|.... .++.+-.+.-+++ .+|....+. ...|-... ++......-.+....++....+.|
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp----lsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP----LSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc----HHHhCcchhHHHHHHHHHHHhhcC
Confidence 99887788777666554 4443333334444 556555442 11121111 111112223344455666666777
Q ss_pred CCCchhHHHHHHHHHHhcCCHH---H-HHHHHhhCC--------------CCCHhHHHH--HHHHHHhcCChHHHHHHHH
Q 046631 544 LDQNVFVGTSLIDMYSKSGVIN---Y-AANVFAKIP--------------EKNSVTYTT--MILGYGQHGMSERALSLFR 603 (813)
Q Consensus 544 ~~~~~~~~~~li~~~~~~g~~~---~-A~~~~~~~~--------------~~~~~~~~~--li~~~~~~g~~~~A~~~~~ 603 (813)
+++ ++..+...|-.....+ + +..+...+. .|....|.. ++..|-..|+++.|+.+++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 2333333332211111 1 111111111 234455544 5677888999999999999
Q ss_pred HHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCCh
Q 046631 604 SMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNV 682 (813)
Q Consensus 604 ~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 682 (813)
..+. -.|+.+ .|..=.+.+.+.|++++|..++++..+. . .||...-.--+.-..++.+.++|.++......++..
T Consensus 396 ~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el-D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 396 LAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL-D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG 471 (700)
T ss_pred HHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc
Confidence 9998 467665 5556667899999999999999998743 1 245554446777788999999999998887555521
Q ss_pred -H----H---HHHHH--HHHHHHhCCHHHHHHHHH
Q 046631 683 -L----E---IWGSL--LGSCRLHGHSELAEVVAK 707 (813)
Q Consensus 683 -~----~---~~~~l--~~~~~~~g~~~~a~~~~~ 707 (813)
. + +|..+ +.+|.++|++.+|++-+.
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 1 1 56655 457778888877765443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-09 Score=118.13 Aligned_cols=211 Identities=14% Similarity=0.030 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 046631 529 IELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSM 605 (813)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (813)
.++|...++...+.. +.+...+..+..++...|++++|...|++.. .| +...|..+...+...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444444443332 1244556667777888889999999998876 34 5678888899999999999999999999
Q ss_pred HhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCCh
Q 046631 606 KGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNV 682 (813)
Q Consensus 606 ~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 682 (813)
.+. .|+.. .+..++..+...|++++|...++++.+. ..|+ +..+..++.+|...|++++|...++++. ..|..
T Consensus 399 l~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 399 LKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred Hhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 984 55543 3334444566789999999999988754 1354 6667889999999999999999998873 44444
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
...++.+...+...| +.|...++++++..-.. +.....+..+|.-.|+-+.+..+ +++.+.+
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 446777777777777 47777777766543332 22233466778888888777766 8887654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-05 Score=87.52 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=130.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDM 557 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 557 (813)
...|+.+..+-.+.|...+|++-|-+ .-|+..|.-++..+.+.|.+++-.+++...++..-+|.+ -+.||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 45788888898999999999887754 346778999999999999999999999999888777765 4678999
Q ss_pred HHhcCCHHHHHHHHhhCCC-----------------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046631 558 YSKSGVINYAANVFAKIPE-----------------------KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA 614 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 614 (813)
|++.+++.+-++++..--. .++.-|..|...+...|+++.|...-++. .+.
T Consensus 1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 9999999888776542110 13344555566666666666666555443 234
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQ--PSTEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLLG 691 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~ 691 (813)
.||..+-.+|...+.+.-| +|. |+. ....-..-|+..|...|.+++-+.+++... .+.-....+.-|.-
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiC---GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELai 1321 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QIC---GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAI 1321 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----Hhc---CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 4677777777665544322 222 333 235556677777777888887777777641 11111114555555
Q ss_pred HHHHh
Q 046631 692 SCRLH 696 (813)
Q Consensus 692 ~~~~~ 696 (813)
.|.+-
T Consensus 1322 LYsky 1326 (1666)
T KOG0985|consen 1322 LYSKY 1326 (1666)
T ss_pred HHHhc
Confidence 55443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-09 Score=97.09 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=144.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVAD 658 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 658 (813)
+...|.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+... .+.|+ -.+.|..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 456678889999999999999999998 45655 488888889999999999999999988 66885 888999999
Q ss_pred HHhccCCHHHHHHHHHHhCcCC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCc
Q 046631 659 MLGRVGKVVEAYEFVKELGEEG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW 735 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 735 (813)
-+|..|++++|...|++....| ...++|..++.+..+.|+.+.|+..+++.++.+|+. +.....++....+.|++
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDY 189 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC--ChHHHHHHHHHHhcccc
Confidence 9999999999999999986666 445589999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHCCC
Q 046631 736 ENVDKVRKEMRERGL 750 (813)
Q Consensus 736 ~~A~~~~~~m~~~~~ 750 (813)
-+|.-+++.....+.
T Consensus 190 ~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 190 APARLYLERYQQRGG 204 (250)
T ss_pred hHHHHHHHHHHhccc
Confidence 999999999887654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.4e-10 Score=103.49 Aligned_cols=229 Identities=14% Similarity=0.122 Sum_probs=151.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN 528 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 528 (813)
+.+...|.+.|.+.+|.+.|+.-....|-+.+|-.|-.+|.+.+++..|+.+|.+-.+. .|-.+||.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l----------- 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL----------- 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh-----------
Confidence 45777788888888888888876655677777777788888888888888888776653 56655542
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046631 529 IELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGC 608 (813)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 608 (813)
.-....+-..+ +.++|.++|+...+.
T Consensus 294 -----------------------~g~ARi~eam~-------------------------------~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 294 -----------------------LGQARIHEAME-------------------------------QQEDALQLYKLVLKL 319 (478)
T ss_pred -----------------------hhhHHHHHHHH-------------------------------hHHHHHHHHHHHHhc
Confidence 11112222233 344444444444442
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh----CcCCChHH
Q 046631 609 GIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL----GEEGNVLE 684 (813)
Q Consensus 609 g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~ 684 (813)
. ..+......+...|...++.+-|+.+++++... |+. +...|+.++-+|.-.+++|-++.-|++. ...+...+
T Consensus 320 ~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaD 396 (478)
T KOG1129|consen 320 H-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAAD 396 (478)
T ss_pred C-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhh
Confidence 1 122223333444444555555555555555544 432 4455555555555555555555554443 23345567
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
+|..|.......||+..|.+.|+-++..++++ ...+..|+-+-.+.|+.++|..++....+..
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h--~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH--GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcch--HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999999999998 8999999999999999999999999888654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-08 Score=93.57 Aligned_cols=419 Identities=14% Similarity=0.075 Sum_probs=218.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHH-HHHHHHh
Q 046631 197 IVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASS-AIFMYAE 275 (813)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~ 275 (813)
+..++.+.|++++|+..++-+.+.. .|+......+.-+.--.|.+.+|.++-... |+....+. |...-.+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka--------~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA--------PKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHH
Confidence 3445667899999999988876643 445554444444444556677776665443 44444444 4444455
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHH
Q 046631 276 LGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAY 355 (813)
Q Consensus 276 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 355 (813)
.|+-++-...-+.+.. ...---+|.+.....-.+.+|+++|++.+... |+-...+.-+..
T Consensus 134 lndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn---~ey~alNVy~AL---------------- 193 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN---PEYIALNVYMAL---------------- 193 (557)
T ss_pred hCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---hhhhhhHHHHHH----------------
Confidence 5665555444443322 22333344555555556788888885555432 233333322222
Q ss_pred HHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhcCCChHHHHHHH
Q 046631 356 IIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSV-TVTALLSAASNLRNQDVGKQTH 434 (813)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~ 434 (813)
+|.+..-++-+.+++.--.+. .||+. ..+.......+.-+-..+..-.
T Consensus 194 -----------------------------CyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 194 -----------------------------CYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred -----------------------------HHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 234444444444444443332 22221 1111111111111111111111
Q ss_pred HHHHHhCCCCcchHHHHHHHHHhc-----CCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 046631 435 AYLLRHGIHFEGMESYLIDMYAKS-----GLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNV 509 (813)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 509 (813)
..+.+.+...- ..+.-.++. ..-+.|.+++-.+...-| ..--.|+--|.+.++..+|..+.+++.- .
T Consensus 243 k~ladN~~~~~----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--t 314 (557)
T KOG3785|consen 243 KELADNIDQEY----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP--EARLNLIIYYLNQNDVQEAISLCKDLDP--T 314 (557)
T ss_pred HHHHhcccccc----hhHHHHHHcCeEEEeCCccHHHhchHHHhhCh--HhhhhheeeecccccHHHHHHHHhhcCC--C
Confidence 11111111000 011111221 122344444443331111 2223345557777788877777665422 1
Q ss_pred CCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCHhHHHH
Q 046631 510 TPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-----KNSVTYTT 584 (813)
Q Consensus 510 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 584 (813)
.|-......+..+ ++.+-......+.-|.+.|+-.-+ ..+.--.+
T Consensus 315 tP~EyilKgvv~a------------------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 315 TPYEYILKGVVFA------------------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred ChHHHHHHHHHHH------------------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 2222222222211 111111111223334444443321 12223445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHH-HHHHHHHhcc
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHY-CCVADMLGRV 663 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~ 663 (813)
+.+.+.-..++++.+-.++....- +..|...-..+..|.+..|++.+|.++|-++... .++ |..+| ..|..+|.+.
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhc
Confidence 555566666777777777777664 3444444456788999999999999999877633 333 34444 5677899999
Q ss_pred CCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 664 GKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 664 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
|+.+-|++++-++....+.......+..-|.+.+.+=-|-+.|..+-.++|.+
T Consensus 442 kkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred CCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 99999999998887666666566677888999999888888898888888885
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-07 Score=96.79 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVA 657 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 657 (813)
..|......+...++.++|...+.+... +.|- ...|......+...|..++|.+.|.... -+.|+ +.....++
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHH
Confidence 3566667778888888899888888776 3443 3456666667788999999999998887 67897 89999999
Q ss_pred HHHhccCCHHHHHH--HHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 658 DMLGRVGKVVEAYE--FVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 658 ~~~~~~g~~~~A~~--~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.++.+.|+..-|.. ++..+ +.+|..++.|..|+..+.+.|+.+.|.+.|..++++++.+
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 99999998776666 66665 7888888899999999999999999999999999998776
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-06 Score=88.75 Aligned_cols=441 Identities=18% Similarity=0.184 Sum_probs=219.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhc
Q 046631 197 IVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAEL 276 (813)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 276 (813)
.|..|....++++|+.+-+. .|.+.-...-.+.++++...|+-+.|-++- .. +- --.+.|..|.+.
T Consensus 563 aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~s------dg-d~laaiqlyika 628 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK----ES------DG-DGLAAIQLYIKA 628 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc----cc------cC-ccHHHHHHHHHc
Confidence 34455555666776665432 121111112233344555555544443321 11 11 113456777888
Q ss_pred CChHHHHHHHh--hcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHH
Q 046631 277 GCFDFARKIFD--NCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHA 354 (813)
Q Consensus 277 g~~~~A~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 354 (813)
|..-.|.+... +....|......+..++.+..-+++|=++| +.+.. +...+..+-+-.-+..|.++-+
T Consensus 629 ~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlf-eki~d---------~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 629 GKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLF-EKIHD---------FDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred CCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHH-HHhhC---------HHHHHHHHHcccHHHHHHHHHH
Confidence 87777766542 222234444555555555555555555555 32211 1112222222222222322221
Q ss_pred HHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHH
Q 046631 355 YIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTH 434 (813)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 434 (813)
.. ++.. -+..-...-..+...|+++.|+..|-+... ....+.+......+..|..++
T Consensus 699 fa---fp~e-----------vv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 699 FA---FPEE-----------VVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred hh---CcHH-----------HhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHH
Confidence 11 1000 011111223344556666666666644321 223344555666677777776
Q ss_pred HHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 046631 435 AYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV 514 (813)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 514 (813)
+.+...... +..|..+.+.|+..|+++.|.++|-+.. .++--|..|.+.|+|+.|.++-.+.. |......
T Consensus 756 dniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~-------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~ 825 (1636)
T KOG3616|consen 756 DNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEAD-------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATIS 825 (1636)
T ss_pred HHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcc-------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHH
Confidence 665554322 1344556777777777777777776554 34556667777777777776654432 2222222
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCC
Q 046631 515 TIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGM 594 (813)
Q Consensus 515 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 594 (813)
.|-+-..-+-+.|++.+|+++|-.+..|+. .|..|-++|.
T Consensus 826 -----------------------------------~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~ 865 (1636)
T KOG3616|consen 826 -----------------------------------LYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGL 865 (1636)
T ss_pred -----------------------------------HHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCc
Confidence 233333444556666667666666666654 2556667777
Q ss_pred hHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 046631 595 SERALSLFRSMKGCGIEPDA--ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEF 672 (813)
Q Consensus 595 ~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 672 (813)
.+..+++..+ ..|+. .|...+..-+...|++..|...|-+.. -|..-+++|-..+.|++|.++
T Consensus 866 ~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 866 DDDMIRLVEK-----HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred chHHHHHHHH-----hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHH
Confidence 7766666655 23332 255555666666777777766554332 244556667777777777766
Q ss_pred HHHhCcC---CChHHHHH------HHHHHHHHhCCHHHHHHHH------HHHh---cCCCCCCCchhHHHHHHHHHhcCC
Q 046631 673 VKELGEE---GNVLEIWG------SLLGSCRLHGHSELAEVVA------KKLL---EMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 673 ~~~~~~~---~~~~~~~~------~l~~~~~~~g~~~~a~~~~------~~~~---~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
-+.-... ..+...|. +-...+.++|-.+.|.... +-++ .+...+..+..+.-++--+...|+
T Consensus 931 aktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk 1010 (1636)
T KOG3616|consen 931 AKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGK 1010 (1636)
T ss_pred HhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccc
Confidence 5542111 11111232 1122334444444433321 1111 111222225556667777778888
Q ss_pred cHHHHHHHHHHHHCC
Q 046631 735 WENVDKVRKEMRERG 749 (813)
Q Consensus 735 ~~~A~~~~~~m~~~~ 749 (813)
+++|-+-+-+..+.+
T Consensus 1011 ~edaskhyveaikln 1025 (1636)
T KOG3616|consen 1011 FEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhhhHhhHHHhhcc
Confidence 888877666665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-07 Score=93.35 Aligned_cols=253 Identities=12% Similarity=0.144 Sum_probs=144.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HhccCCChHH--HHHHHHH-----------HHHcCCCCc
Q 046631 484 MIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLP---ACNPMGNIEL--GKQLHGF-----------SIRYLLDQN 547 (813)
Q Consensus 484 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~---~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~ 547 (813)
|.-.+-..|+..+|..+|...++.+ .+|........+ +...-.++.. ....++. +........
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4455667788888888888887764 444433222221 1111111111 1111111 000000111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-HhHHHHHHHHH-H-hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIPEKN-SVTYTTMILGY-G-QHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC 624 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~-~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 624 (813)
...-+.++.+|. +..+.+.++........ ...+.+++... . +...+.+|.+++...-+....-........+...
T Consensus 309 i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 309 IYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 122234444444 44567777777666332 33444444333 2 2235788888888887743222233445555567
Q ss_pred hccCcHHHHHHHHH--------HHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh--------CcCCChHHHHHH
Q 046631 625 SYAGLVDEGLQIFD--------LMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL--------GEEGNVLEIWGS 688 (813)
Q Consensus 625 ~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~~ 688 (813)
...|+++.|.+++. .+.+. +.. +.+...++..+.+.++-+-|..++.+. ...+.....|.-
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 78999999999998 44432 333 455566778888877655555554442 233333335666
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 689 LLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 689 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
+...-.++|+.++|...++++++.+|.+ ......+.-+|+.. +.+.|..+-+.+
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~~d--~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNPND--TDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCCch--HHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 6666677899999999999999999998 77777777777765 456666654443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.6e-07 Score=84.03 Aligned_cols=407 Identities=14% Similarity=0.080 Sum_probs=215.7
Q ss_pred CChhHHHHHHcccCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHhhCCCChhHHHHHH
Q 046631 174 SKYDLVCKVFDTMRR---RNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI-SFVNVFPALSSLGDYKSADVVY 249 (813)
Q Consensus 174 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~ 249 (813)
|++++|..++..+.. ++...|--+...+.-.|.+.+|..+-... |+.. .-..++...-+.++-++-..++
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh 144 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFH 144 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHH
Confidence 777777777766543 34445555555555667777777765442 3333 3333444445667766666666
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCC--CcchHHHHH-HHHHhCCCchHHHHHHHHHHHhCCC
Q 046631 250 GLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLER--NTEVWNTMI-GGYVQNNHPVEAIELFVQVLELDEI 326 (813)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li-~~~~~~g~~~~A~~~~~~~m~~~g~ 326 (813)
+.+... ..-.-+|..+.-..-.+.+|+.++.++... +-...|.-+ -+|.+..-++-+.++++.-+++.
T Consensus 145 ~~LqD~-------~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-- 215 (557)
T KOG3785|consen 145 SSLQDT-------LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-- 215 (557)
T ss_pred HHHhhh-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--
Confidence 655432 122334444444445688888888887653 444455433 45667777777777774445433
Q ss_pred CCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCC
Q 046631 327 VFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQG 406 (813)
Q Consensus 327 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 406 (813)
||+ |+..-+.+|. ..+.-.-..|..-..++.+.+
T Consensus 216 -pdS-tiA~NLkacn--------------------------------------------~fRl~ngr~ae~E~k~ladN~ 249 (557)
T KOG3785|consen 216 -PDS-TIAKNLKACN--------------------------------------------LFRLINGRTAEDEKKELADNI 249 (557)
T ss_pred -CCc-HHHHHHHHHH--------------------------------------------HhhhhccchhHHHHHHHHhcc
Confidence 221 1222222221 111111111111122222211
Q ss_pred CCCCHhHHH-HHHH-HHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHH
Q 046631 407 FMIDSVTVT-ALLS-AASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAM 484 (813)
Q Consensus 407 ~~pd~~t~~-~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 484 (813)
-.. .-+. -+++ -+.--.+-+.|.+++--+.+.-+ ...-.|+-.|.+.+++.+|..+.+++....|-....-.+
T Consensus 250 ~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP---EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgv 324 (557)
T KOG3785|consen 250 DQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP---EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGV 324 (557)
T ss_pred ccc--chhHHHHHHcCeEEEeCCccHHHhchHHHhhCh---HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHH
Confidence 000 0000 0000 01111233444444433333221 122336667889999999999988887444433222222
Q ss_pred H-----HHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046631 485 I-----AGYTQNGLLEEAFVAFRQMLEHNVTPNVV-TIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMY 558 (813)
Q Consensus 485 i-----~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (813)
. .-........-|...|+-.-+.+..-|.. .-.++...+.-..+++++..++..+...-...|...+ .+.+++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk 403 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAK 403 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHH
Confidence 1 11122223445555565544444433322 1222333333445666777666666655444444444 467888
Q ss_pred HhcCCHHHHHHHHhhCCCC---CHhHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhccCcHHHH
Q 046631 559 SKSGVINYAANVFAKIPEK---NSVTYTTM-ILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVL-SACSYAGLVDEG 633 (813)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~g~~~~a 633 (813)
+..|++.+|+++|-.+..+ |-.+|.++ ..+|.++++.+.|.+++-++. -..+..+...+| .-|.+.+.+--|
T Consensus 404 ~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888754 45566554 567888888888877665443 334445555554 467788888888
Q ss_pred HHHHHHHHHhcCCCCChhHH
Q 046631 634 LQIFDLMQQEYKIQPSTEHY 653 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p~~~~~ 653 (813)
-+.|+.+. ...|+++.|
T Consensus 481 aKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 481 AKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHhhhHHH---ccCCCcccc
Confidence 88887776 557877766
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-06 Score=89.11 Aligned_cols=276 Identities=13% Similarity=0.080 Sum_probs=156.5
Q ss_pred CChhHHHHHHcc--cCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHH
Q 046631 174 SKYDLVCKVFDT--MRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGL 251 (813)
Q Consensus 174 g~~~~a~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 251 (813)
|.+..|.++... ....|......+..++.+..-+++|-++|+++.. +...+.++.+-..+..|.++-+.
T Consensus 629 ~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 629 GKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred CCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHh
Confidence 555544443321 1123555556666777777777777777777643 22233333333333444443322
Q ss_pred HHHhCCCCCCcHH--HHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCC
Q 046631 252 LVKLGSEYVNDLF--VASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFD 329 (813)
Q Consensus 252 ~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~ 329 (813)
.- |... .-..-...+...|+++.|...|-+.. ..-..|.+-.....+.+|+.++ +.++... .-
T Consensus 700 af-------p~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~il-dniqdqk--~~ 764 (1636)
T KOG3616|consen 700 AF-------PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISIL-DNIQDQK--TA 764 (1636)
T ss_pred hC-------cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHH-HHhhhhc--cc
Confidence 21 1111 11222333444566666665553321 1122344556677788888888 5554432 23
Q ss_pred hhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCC
Q 046631 330 DVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMI 409 (813)
Q Consensus 330 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 409 (813)
..-|..+.+.|+..|+++.|.++|... ..++-.|..|.++|+|++|.++-.+.. |...
T Consensus 765 s~yy~~iadhyan~~dfe~ae~lf~e~--------------------~~~~dai~my~k~~kw~da~kla~e~~--~~e~ 822 (1636)
T KOG3616|consen 765 SGYYGEIADHYANKGDFEIAEELFTEA--------------------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEA 822 (1636)
T ss_pred cccchHHHHHhccchhHHHHHHHHHhc--------------------chhHHHHHHHhccccHHHHHHHHHHhc--Cchh
Confidence 345677778888888888888877542 346667888999999999988866543 3344
Q ss_pred CHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHH
Q 046631 410 DSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYT 489 (813)
Q Consensus 410 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~ 489 (813)
....|..-..-+-..|++.+|.++|-.+-.- ...|.||-+.|..++.+++.++-.+. .-..+.-.+..-|-
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~~p--------~~aiqmydk~~~~ddmirlv~k~h~d-~l~dt~~~f~~e~e 893 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEP--------DKAIQMYDKHGLDDDMIRLVEKHHGD-HLHDTHKHFAKELE 893 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEccCc--------hHHHHHHHhhCcchHHHHHHHHhChh-hhhHHHHHHHHHHH
Confidence 4455555455566677777777766332211 23677888888888888877765421 11224445556666
Q ss_pred hCCChHHHHHHHHHH
Q 046631 490 QNGLLEEAFVAFRQM 504 (813)
Q Consensus 490 ~~~~~~~A~~~~~~m 504 (813)
..|+...|..-|-+.
T Consensus 894 ~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 894 AEGDLKAAEEHFLEA 908 (1636)
T ss_pred hccChhHHHHHHHhh
Confidence 677777776665443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.5e-09 Score=114.06 Aligned_cols=180 Identities=18% Similarity=0.057 Sum_probs=146.7
Q ss_pred hcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 046631 560 KSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQ 635 (813)
Q Consensus 560 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~ 635 (813)
..+++++|...+++..+ .+..+|..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34568899999998773 36788999999999999999999999999994 565 4567788889999999999999
Q ss_pred HHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCc--CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 046631 636 IFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGE--EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM 712 (813)
Q Consensus 636 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 712 (813)
.++++. .+.|+ ...+..++..+...|++++|+..++++.. .|+.+..+..+..++...|+.++|...++++...
T Consensus 394 ~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 999998 45776 33444455567778999999999988743 3556657888889999999999999999999888
Q ss_pred CCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 713 DTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 713 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.|.+ ......++..|...| ++|...++++.+.
T Consensus 471 ~~~~--~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 471 EITG--LIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred cchh--HHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8887 777778888888887 5888888887753
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-06 Score=93.01 Aligned_cols=298 Identities=10% Similarity=0.071 Sum_probs=194.2
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhc-
Q 046631 199 SWYVKTERYVEAVRQFRMMLRMGIRPSTI-SFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAEL- 276 (813)
Q Consensus 199 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 276 (813)
..+...|++++|++.++.-.. .-+|.. .+......+.+.|+.++|..++..+++.+++ |...|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd---n~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD---NYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHhhhc
Confidence 445677888888888876444 234544 4455556677888888888888888888843 444555555555222
Q ss_pred ----CChHHHHHHHhhcCCC--CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHH
Q 046631 277 ----GCFDFARKIFDNCLER--NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQ 350 (813)
Q Consensus 277 ----g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 350 (813)
.+.+....+++++... .......+.-.+.....+....+-|-..+-..|+++ +|+.+-..+....+.....
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 2466667777766432 111111121122222334444444435556667654 4555555566555555555
Q ss_pred HHHHHHHHhcccchhhh---hccCCCCCcchH--HHHHHHHHHCCCcHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcC
Q 046631 351 QLHAYIIKNFVALPVIV---LNAVIERDVVSW--NTMISAFVQNGLDDEGLMLVYEMQKQGFMID-SVTVTALLSAASNL 424 (813)
Q Consensus 351 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~ 424 (813)
+++.............- ...-..|....| ..+...|-..|++++|++++++.++. .|+ ...|..-.+.+-..
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 55555544211110000 001123444344 66678889999999999999999987 566 45677777889999
Q ss_pred CChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCC--C--Chh----hH--HHHHHHHHhCCCh
Q 046631 425 RNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGD--R--DQA----TW--NAMIAGYTQNGLL 494 (813)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~----~~--~~li~~~~~~~~~ 494 (813)
|++.+|...++.....+.....+.+-.+..+.++|++++|.+++......+ | |.. .| .....+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999998888888999999999999999999998766332 2 222 23 3446789999999
Q ss_pred HHHHHHHHHHHH
Q 046631 495 EEAFVAFRQMLE 506 (813)
Q Consensus 495 ~~A~~~~~~m~~ 506 (813)
..|+..|....+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999888777654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-08 Score=101.88 Aligned_cols=213 Identities=15% Similarity=0.076 Sum_probs=150.8
Q ss_pred CChHHHHHHHHHHHHc-CCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 046631 527 GNIELGKQLHGFSIRY-LLDQN--VFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALS 600 (813)
Q Consensus 527 ~~~~~a~~~~~~~~~~-~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 600 (813)
+..+.+..-+.+++.. ...|+ ...|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556666666666643 22322 45677888889999999999999988763 367899999999999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcC
Q 046631 601 LFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEE 679 (813)
Q Consensus 601 ~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 679 (813)
.|++.++ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++....
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 5665 457777888888999999999999998854 675332223333455678899999999664322
Q ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHHHHh-------cCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 680 GNVLEIWGSLLGSCRLHGHSELAEVVAKKLL-------EMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 680 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.+.. .|.. .......|+...+ ..++.+. ++.|+. +..|..+|.+|.+.|++++|...|++..+.+
T Consensus 195 ~~~~-~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~--~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKE-QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERL--CETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCcc-ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1111 3332 2222334554333 2333333 344555 6789999999999999999999999998654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-06 Score=91.80 Aligned_cols=620 Identities=13% Similarity=0.032 Sum_probs=325.8
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCC-hhHhhHHHH
Q 046631 72 IWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPS-RFVYNSLLN 150 (813)
Q Consensus 72 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~ 150 (813)
.|..|...|+..-+...|...|++..+.+ +. +......+...+++..+.+.|..+.-...+. .|- ...+|-+-
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD--at-daeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~- 567 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD--AT-DAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQ- 567 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhh-
Confidence 45555555555555666666666665544 22 5555666666666666666666552111111 000 00001000
Q ss_pred HhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh
Q 046631 151 MYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR---RNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI 227 (813)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 227 (813)
..+.+...++...|..-|+...+ .|..+|..+..+|.+.|++..|+++|.+... +.|+..
T Consensus 568 ---------------rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~ 630 (1238)
T KOG1127|consen 568 ---------------RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK 630 (1238)
T ss_pred ---------------ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH
Confidence 01111223677777777776554 4677899999999999999999999988876 556554
Q ss_pred hHHHHHH--HhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHh-------cCChHHHHHHHhhcCC-------
Q 046631 228 SFVNVFP--ALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAE-------LGCFDFARKIFDNCLE------- 291 (813)
Q Consensus 228 t~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~~~~~~~~------- 291 (813)
|..... .-+..|.++++...++.+....-. -....+.+...+.+ .|-...|...|+...+
T Consensus 631 -y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~---e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 631 -YGRFKEAVMECDNGKYKEALDALGLIIYAFSL---ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 222222 235678899999888887764321 12222333333333 2333333333332211
Q ss_pred ----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhh
Q 046631 292 ----RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVI 366 (813)
Q Consensus 292 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~ 366 (813)
.+...|-.+ .+|..+| -..+ .-.|+......+..-.-+.+....-. +.-...+ +.... .
T Consensus 707 h~~~~~~~~Wi~a----------sdac~~f-~q~e--~~~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hl--s 770 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVA----------SDACYIF-SQEE--PSIVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHL--S 770 (1238)
T ss_pred HhhhhhHHHHHHH----------hHHHHHH-HHhc--ccchHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHH--H
Confidence 112222222 2233333 2222 11344333333333233333321111 1101111 00000 0
Q ss_pred hhccCCCCCcchHHHHHHHHHH----CC----CcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 046631 367 VLNAVIERDVVSWNTMISAFVQ----NG----LDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLL 438 (813)
Q Consensus 367 ~~~~~~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 438 (813)
...+..+|..++..|.+ .| +...|+..+....+. -.-+..+|+.|.- ....|++..+.-.+-...
T Consensus 771 -----l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGV-lsg~gnva~aQHCfIks~ 843 (1238)
T KOG1127|consen 771 -----LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGV-LSGIGNVACAQHCFIKSR 843 (1238)
T ss_pred -----HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHH-hhccchhhhhhhhhhhhh
Confidence 11224556666555544 22 224566777766554 1334556655543 355566666666665555
Q ss_pred HhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHH----HCCCCCCH
Q 046631 439 RHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQML----EHNVTPNV 513 (813)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~~~~p~~ 513 (813)
...+....++..+.-.+.+..+++-|...|.......| |.+.|--....-...|+.-+++.+|..-- ..|-.|+.
T Consensus 844 ~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 844 FSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred hccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 55555557777788889999999999999999988888 77888777767777888888888887621 12334444
Q ss_pred HHHHHHHHHhccCCChHHHHHH----------HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCC
Q 046631 514 VTIASVLPACNPMGNIELGKQL----------HGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP-----EKN 578 (813)
Q Consensus 514 ~t~~~ll~~~~~~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~ 578 (813)
.-+..........|+.+.-... .+... .+.+.+...|.+.....-+.+....|.++..+.. +-+
T Consensus 924 ~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf-~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d 1002 (1238)
T KOG1127|consen 924 QYWLCATEIHLQNGNIEESINTARKISSASLALSYYF-LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD 1002 (1238)
T ss_pred hHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH-hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4333333344455554432222 12111 1445566777777777777787777777766643 235
Q ss_pred HhHHHHH----HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHH
Q 046631 579 SVTYTTM----ILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHY 653 (813)
Q Consensus 579 ~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 653 (813)
...||.+ .+.++..|.++.|..-+..... ..++..-..-+.. .-.++++++.+.|+++....+-..+ +...
T Consensus 1003 ~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl 1078 (1238)
T KOG1127|consen 1003 ESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLL 1078 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhh
Confidence 5555543 3445556777755543332111 1112121111211 3467888888888888754333334 4445
Q ss_pred HHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc---CCCCCCCchhHHHHHHHH
Q 046631 654 CCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE---MDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 654 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~~~l~~~~ 729 (813)
..+.......+.-+.|...+-+. ...+....+...|...+.-..+-.....+.+++.. .+--. -..-.++..+|
T Consensus 1079 ~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~--~~~~ll~e~i~ 1156 (1238)
T KOG1127|consen 1079 CKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFC--WPPGLLKELIY 1156 (1238)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhc--cChhHHHHHHH
Confidence 55666667777777777665443 33333332444444444433333333333333222 11111 11123445678
Q ss_pred HhcCCcHHHHHHHHHHHHC
Q 046631 730 AEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 730 ~~~g~~~~A~~~~~~m~~~ 748 (813)
.++||-....+.+++..-.
T Consensus 1157 ~~~~r~~~vk~~~qr~~h~ 1175 (1238)
T KOG1127|consen 1157 ALQGRSVAVKKQIQRAVHS 1175 (1238)
T ss_pred HHhhhhHHHHHHHHHHHhc
Confidence 8888888877777777643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-08 Score=97.80 Aligned_cols=197 Identities=19% Similarity=0.166 Sum_probs=125.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDM 557 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 557 (813)
...+..+...|...|++++|...+++..+.. |+. ...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~----------------------------------~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDD----------------------------------YLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccc----------------------------------HHHHHHHHHH
Confidence 4567777888888888888888888876642 321 2233444455
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 046631 558 YSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEG 633 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a 633 (813)
|...|++++|.+.+++.. ..+...+..+...+...|++++|.+.+++.......+ ....+..+...+...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 555566666666555444 2244556666666777777777777777776542222 233455566667777788888
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCc-CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 634 LQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGE-EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
...+++..+. .|+ ...+..++..+...|++++|.+.+++... .+..+..+..+...+...|+.+.|..+.+.+..
T Consensus 155 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 155 EKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8777777643 443 56677777777778888888777776522 344444555666777777777777777766655
Q ss_pred CC
Q 046631 712 MD 713 (813)
Q Consensus 712 ~~ 713 (813)
..
T Consensus 232 ~~ 233 (234)
T TIGR02521 232 LF 233 (234)
T ss_pred hC
Confidence 43
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-06 Score=82.69 Aligned_cols=262 Identities=12% Similarity=0.017 Sum_probs=195.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVT-IASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 555 (813)
|+.....+...+...|+.++|+..|++.+.. .|+..+ .....-.+...|+.+....+...+....- .....|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhh
Confidence 7778899999999999999999999998763 454433 11112223566777777776666554320 1112222223
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHH
Q 046631 556 DMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVD 631 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~ 631 (813)
.......+++.|+.+-++..+- ++..|-.-...+...|+.++|.-.|+..+. +.| +-..|..|+.+|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 3345567888898888877643 444555555778899999999999999887 565 4569999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHH-HHHhc-cCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 046631 632 EGLQIFDLMQQEYKIQPSTEHYCCVA-DMLGR-VGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKK 708 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 708 (813)
+|..+-+...+.+ .-+..+...++ ..+.- .---++|.+++++. ..+|......+.+...|...|.++.++.++++
T Consensus 386 EA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9998887776542 23577776664 44433 33468899999885 66776655888999999999999999999999
Q ss_pred HhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 709 LLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 709 ~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.+...|+. ..+..|++++.....+.+|.+.|......
T Consensus 464 ~L~~~~D~---~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 464 HLIIFPDV---NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhhcccc---HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999985 77899999999999999999999988843
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-05 Score=81.40 Aligned_cols=567 Identities=11% Similarity=0.079 Sum_probs=287.0
Q ss_pred CCcchHHHHHH--HHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhC--------
Q 046631 68 PTTVIWNTIII--GFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCF-------- 137 (813)
Q Consensus 68 ~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------- 137 (813)
=|..|-..|+. -|..-|+.+.|++-.+.+. +...|..+.+.|.+.++++.|.-.+..|....
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 45555555554 4677888888888877774 34578899999999999998888887775331
Q ss_pred CCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHH
Q 046631 138 SNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMM 217 (813)
Q Consensus 138 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 217 (813)
.+.+...-....-.-... |.+++|..++.+-.+ |..|=..|-..|.+.+|+++-+.=
T Consensus 796 ~q~~~e~eakvAvLAieL------------------gMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 796 QQNGEEDEAKVAVLAIEL------------------GMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETK 852 (1416)
T ss_pred HhCCcchhhHHHHHHHHH------------------hhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhc
Confidence 011101100011111112 788888888866544 334445566678888888876653
Q ss_pred HHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchH
Q 046631 218 LRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVW 297 (813)
Q Consensus 218 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 297 (813)
..-.+ ..||-.-..-+-..++.+.|+++|+....... .+...| . .+.....+..+.+.++. .|
T Consensus 853 DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~haf------ev~rmL-~-----e~p~~~e~Yv~~~~d~~--L~ 915 (1416)
T KOG3617|consen 853 DRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAF------EVFRML-K-----EYPKQIEQYVRRKRDES--LY 915 (1416)
T ss_pred cceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHH------HHHHHH-H-----hChHHHHHHHHhccchH--HH
Confidence 32212 22444444455556777778777765422111 111111 0 12233333444444443 33
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcc
Q 046631 298 NTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVV 377 (813)
Q Consensus 298 ~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (813)
.-....+-..|..+.|+.+| ...+ -|-++++..|-.|+.++|.++-++ .-|..
T Consensus 916 ~WWgqYlES~GemdaAl~~Y-~~A~---------D~fs~VrI~C~qGk~~kAa~iA~e-----------------sgd~A 968 (1416)
T KOG3617|consen 916 SWWGQYLESVGEMDAALSFY-SSAK---------DYFSMVRIKCIQGKTDKAARIAEE-----------------SGDKA 968 (1416)
T ss_pred HHHHHHHhcccchHHHHHHH-HHhh---------hhhhheeeEeeccCchHHHHHHHh-----------------cccHH
Confidence 33445555679999999998 4333 356777778888999988887653 24566
Q ss_pred hHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHH---------------HHHHHHHHHHhCC
Q 046631 378 SWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDV---------------GKQTHAYLLRHGI 442 (813)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~---------------a~~~~~~~~~~~~ 442 (813)
....|.+.|-..|++.+|..+|.+.+ +|...|+.|-.++--+. |.++|++ .|.
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~ 1036 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGG 1036 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cch
Confidence 67788899999999999999998765 34555554443332221 1122221 110
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhh------------cCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 046631 443 HFEGMESYLIDMYAKSGLIKTARQIFEK------------NDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVT 510 (813)
Q Consensus 443 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 510 (813)
-....+..|-+.|.+.+|.++-=+ -.....|....+.-...|+.+.++++|..++-..++
T Consensus 1037 ----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---- 1108 (1416)
T KOG3617|consen 1037 ----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---- 1108 (1416)
T ss_pred ----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----
Confidence 112244556666666666554211 010122555556666666666677777666655443
Q ss_pred CCHHHHHHHHHHhccCCChHHHHHHHHHHHHc--CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHH
Q 046631 511 PNVVTIASVLPACNPMGNIELGKQLHGFSIRY--LLDQ---NVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTM 585 (813)
Q Consensus 511 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 585 (813)
|.-.+..|... ++.-.+++-+.|.-. +..+ ...+...+.+.+.++|.+..|-+-|...-.+ -..
T Consensus 1109 -----~~~AlqlC~~~-nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~A 1177 (1416)
T KOG3617|consen 1109 -----FSGALQLCKNR-NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSA 1177 (1416)
T ss_pred -----HHHHHHHHhcC-CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHH
Confidence 33334444332 222233333333211 1111 1234445556666777766666665544321 112
Q ss_pred HHHHHhcCChHHHHHHH-------------HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhH
Q 046631 586 ILGYGQHGMSERALSLF-------------RSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEH 652 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~-------------~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 652 (813)
+.++.+.|+.++..-.- +-+.......++.+...++.-|-+...++.--.+|..... + .+..
T Consensus 1178 MraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAq---i--Eiee 1252 (1416)
T KOG3617|consen 1178 MRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQ---I--EIEE 1252 (1416)
T ss_pred HHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHH---h--hHHH
Confidence 33333444432211000 0111112233333333333333333323222222221110 0 1111
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHH----------HHHHH-hCCHHHHHHHHHHHhcCCCCCC----
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLL----------GSCRL-HGHSELAEVVAKKLLEMDTRNS---- 717 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~----------~~~~~-~g~~~~a~~~~~~~~~~~p~~~---- 717 (813)
|..+.. ..|-+++|.+-+.++.........++.|- ..... ..|....+.-.+-+++. |..+
T Consensus 1253 ~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~llee-p~ld~~Ir 1328 (1416)
T KOG3617|consen 1253 LQTYDK---AMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEE-PILDDIIR 1328 (1416)
T ss_pred HhhhhH---HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhC-cCCCCcch
Confidence 111111 11233444444444432222222233222 22111 12444455555555442 3321
Q ss_pred CchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 718 MPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 718 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
....+.+|...|....+|..|.+.+++|..+-
T Consensus 1329 ~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1329 CTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 13456778888999999999999999999653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-07 Score=93.32 Aligned_cols=91 Identities=14% Similarity=0.044 Sum_probs=77.8
Q ss_pred HHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCc
Q 046631 657 ADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW 735 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 735 (813)
+..+.+.|++..|+..|.++ ...|+....|.....+|.+.|++..|+.-.+..++++|+. ...|.--+.++....+|
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~--~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF--IKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHH
Confidence 56677889999999988886 5567777788899999999999999999999999999988 88888888888888999
Q ss_pred HHHHHHHHHHHHCC
Q 046631 736 ENVDKVRKEMRERG 749 (813)
Q Consensus 736 ~~A~~~~~~m~~~~ 749 (813)
++|.+.|.+.++..
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998888543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-05 Score=80.64 Aligned_cols=227 Identities=12% Similarity=0.037 Sum_probs=135.8
Q ss_pred hhhhHHHHHhhcCCcchHHHhhhcCCCC---CcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHh
Q 046631 41 TIRSRLSKICQEGRPHLARQLFDSITRP---TTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKAC 117 (813)
Q Consensus 41 ~~~~~l~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 117 (813)
.+....+..|-.+.+..-.++.+.+... ...|.....-.+..-|+.++|......-.+.. +. +.+.|..+.-.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~-S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LK-SHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cc-cchhHHHHHHHH
Confidence 4556666666655555444444444222 22233333334566788899999888887765 44 677888888878
Q ss_pred hccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccC---CCCcccH
Q 046631 118 AETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMR---RRNVVAW 194 (813)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~ 194 (813)
....++++|.+.+....+.+ ..|..++.-|--.=+.. ++++.........- ......|
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Qm------------------Rd~~~~~~tr~~LLql~~~~ra~w 146 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQM------------------RDYEGYLETRNQLLQLRPSQRASW 146 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHH------------------HhhhhHHHHHHHHHHhhhhhHHHH
Confidence 88889999999999888765 23333333322222222 44433333333222 2345678
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHH------hhCCCChhHHHHHHHHHHHhCCCCCCcHHHHH
Q 046631 195 NTIVSWYVKTERYVEAVRQFRMMLRMG-IRPSTISFVNVFPA------LSSLGDYKSADVVYGLLVKLGSEYVNDLFVAS 267 (813)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 267 (813)
..+..++--.|++..|..+++...+.. -.|+...|...... ....|.++.|.+.+..-...-+ .....-.
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~---Dkla~~e 223 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV---DKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH---HHHHHhh
Confidence 888888888999999999999987764 24666655443332 2455666666555443332221 1222233
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCC
Q 046631 268 SAIFMYAELGCFDFARKIFDNCLER 292 (813)
Q Consensus 268 ~li~~~~~~g~~~~A~~~~~~~~~~ 292 (813)
.-...+.+.+++++|..++..+..+
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 4455666777777777777766554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-07 Score=96.90 Aligned_cols=241 Identities=18% Similarity=0.133 Sum_probs=142.2
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHh-----CCCCc---chHHHHHHHHHhcCCHHHHHHHHhhcCCC--------C
Q 046631 412 VTVTALLSAASNLRNQDVGKQTHAYLLRH-----GIHFE---GMESYLIDMYAKSGLIKTARQIFEKNDSG--------D 475 (813)
Q Consensus 412 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~ 475 (813)
.|+..+...|...|+++.|..++...++. |.... ...+.+...|...+++++|..+|+++... .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555666677777777777777766654 21111 34456888899999999999988864321 2
Q ss_pred C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC-CCch-hHHH
Q 046631 476 R-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLL-DQNV-FVGT 552 (813)
Q Consensus 476 ~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~ 552 (813)
| -..+++.|...|.+.|++++|...++...+- ++. ..|. .+.+ ..++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~--~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEK--LLGASHPEVAAQLS 329 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHH--hhccChHHHHHHHH
Confidence 3 2346777888888888888888888776541 111 0000 0111 1234
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccC
Q 046631 553 SLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA----ITFVAVLSACSYAG 628 (813)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~g 628 (813)
.+...++..+++++|..+++.. ++++... +.++. .+++.|...|.+.|
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~a------------------------l~i~~~~----~g~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKA------------------------LKIYLDA----PGEDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHH------------------------HHHHHhh----ccccchHHHHHHHHHHHHHHHhc
Confidence 4455566666666666665422 2222111 12222 25666666666666
Q ss_pred cHHHHHHHHHHHHHhc----C-CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh--------CcCCChHHHHHHHHHHHH
Q 046631 629 LVDEGLQIFDLMQQEY----K-IQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL--------GEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 629 ~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~~l~~~~~ 694 (813)
++++|.+++++++... + ..+. -..++.|...|.+.+++.+|.++|.+. +..|+....|..|...|.
T Consensus 382 k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 382 KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 6666666666655431 1 1121 445566666666666666666665553 344555557778888888
Q ss_pred HhCCHHHHHHHHHHHh
Q 046631 695 LHGHSELAEVVAKKLL 710 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~ 710 (813)
..|+++.|+++.+.++
T Consensus 462 ~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 462 AQGNYEAAEELEEKVL 477 (508)
T ss_pred HcccHHHHHHHHHHHH
Confidence 8888888887777665
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=0.0001 Score=80.15 Aligned_cols=234 Identities=13% Similarity=0.160 Sum_probs=151.1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHH-HHHHHHhc---------------------------cCC
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTP-NVVTI-ASVLPACN---------------------------PMG 527 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~t~-~~ll~~~~---------------------------~~~ 527 (813)
|+...+.-+.++...+-+.+.+++++++.-.+-.. ..... +.++-... ..+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 44555666778888888888888888876432111 11111 11111111 112
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 528 NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
-+++|..+|+.. ..+....+.||+ ..+.+++|.++-++..+ ...|..+..+-.+.|...+|++-|-+
T Consensus 1063 LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik--- 1129 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK--- 1129 (1666)
T ss_pred HHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh---
Confidence 223333333221 122222233322 34556666666555544 45799999999999999999988754
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHH
Q 046631 608 CGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWG 687 (813)
Q Consensus 608 ~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 687 (813)
.-|+..|..+++.+.+.|.+++-.+++...+++ .-+|.+. +.|+.+|++.+++.+-++++. -|+.. -..
T Consensus 1130 ---adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A-~i~ 1198 (1666)
T KOG0985|consen 1130 ---ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVA-NIQ 1198 (1666)
T ss_pred ---cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCch-hHH
Confidence 235678999999999999999999999777665 5556544 568999999999999887764 35555 566
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
.++.-|...|.++.|.-+|... +.+..|+..+...|.+..|...-++
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7788888888888888887642 3355566666666777666554433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.9e-06 Score=82.94 Aligned_cols=189 Identities=10% Similarity=0.009 Sum_probs=93.2
Q ss_pred cCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHH
Q 046631 458 SGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQN-GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLH 536 (813)
Q Consensus 458 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 536 (813)
.+..+.+.++...++...|....=+.+..++... ..+.++.+++...-+....-........+......|+++.|.+++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3455666666666665445443333333333222 246667777666555321111233444455566677777777777
Q ss_pred H--------HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046631 537 G--------FSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGC 608 (813)
Q Consensus 537 ~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 608 (813)
. .+.+.+.. +.+..+++..|.+.++-+.|..++.+. +..|+.-...
T Consensus 400 ~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~A------------------------i~~~~~~~t~ 453 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSA------------------------IKWWRKQQTG 453 (652)
T ss_pred HHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHH------------------------HHHHHHhccc
Confidence 6 33333332 334455666666666655555555432 2222211110
Q ss_pred CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhC
Q 046631 609 GIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELG 677 (813)
Q Consensus 609 g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 677 (813)
.+.. .++..+...-.+.|+-++|..+++++.+. -.+|..+...++.+|++. +.+.|..+-+.++
T Consensus 454 --s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 454 --SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred --chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 0111 12222222233456666666666666632 123466666666666654 3556666655553
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-07 Score=93.49 Aligned_cols=198 Identities=13% Similarity=0.027 Sum_probs=129.1
Q ss_pred HhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhcCChHHH
Q 046631 522 ACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTMILGYGQHGMSERA 598 (813)
Q Consensus 522 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A 598 (813)
.+...|+.+.|...+....+.. +.+...|+.+...|...|++++|.+.|++..+ | +..+|..+..++...|++++|
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444444444444444444432 12456788888889999999999999988763 3 567888889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHH--HHHHHHHHh
Q 046631 599 LSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVV--EAYEFVKEL 676 (813)
Q Consensus 599 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~ 676 (813)
++.|++..+ ..|+..........+...++.++|...|.+.... ..|+...+ .++..+ .|++. ++.+.+.+.
T Consensus 152 ~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~ 224 (296)
T PRK11189 152 QDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIVEFY--LGKISEETLMERLKAG 224 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHHHHH--ccCCCHHHHHHHHHhc
Confidence 999999998 4565432222222344677899999999776532 23443222 333333 44443 333333321
Q ss_pred -C----cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 677 -G----EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 677 -~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
. ..+....+|..++..+.+.|++++|+..|+++++.+|.+. ..+...+..+
T Consensus 225 ~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~-~e~~~~~~e~ 280 (296)
T PRK11189 225 ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF-VEHRYALLEL 280 (296)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH-HHHHHHHHHH
Confidence 1 1223445899999999999999999999999999997541 4444444433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-05 Score=86.38 Aligned_cols=171 Identities=15% Similarity=0.076 Sum_probs=116.1
Q ss_pred HHHHHHHHHhCCCCCh-hHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC---CCcccHHHHHHHHH
Q 046631 127 KAVHCHFIRCFSNPSR-FVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR---RNVVAWNTIVSWYV 202 (813)
Q Consensus 127 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 202 (813)
..++..+....+.++- ..|..|-..|... .+...|.+.|+..-+ .|..++......|+
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~------------------~Dm~RA~kCf~KAFeLDatdaeaaaa~adtya 537 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDS------------------DDMKRAKKCFDKAFELDATDAEAAAASADTYA 537 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh
Confidence 3333334444444443 4677787888776 677788888877654 46678888899999
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCCh
Q 046631 203 KTERYVEAVRQFRMMLRMGIRPS---TISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCF 279 (813)
Q Consensus 203 ~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 279 (813)
+..+++.|..+.-.--+. .|- ...|..+--.+...++...+..-|+...+..+. |...|..|..+|.++|++
T Consensus 538 e~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk---D~n~W~gLGeAY~~sGry 612 (1238)
T KOG1127|consen 538 EESTWEEAFEICLRAAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK---DYNLWLGLGEAYPESGRY 612 (1238)
T ss_pred ccccHHHHHHHHHHHhhh--chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch---hHHHHHHHHHHHHhcCce
Confidence 999999998884332221 121 112333333456778888888888888887765 888899999999999999
Q ss_pred HHHHHHHhhcCCCCcchHHH---HHHHHHhCCCchHHHHHHHHH
Q 046631 280 DFARKIFDNCLERNTEVWNT---MIGGYVQNNHPVEAIELFVQV 320 (813)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~ 320 (813)
..|.++|.+...-++.++.. .....+..|.+.+|++.+...
T Consensus 613 ~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 613 SHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999998776544443322 233456678888888888333
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-08 Score=92.30 Aligned_cols=234 Identities=10% Similarity=0.013 Sum_probs=136.5
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcC
Q 046631 380 NTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSG 459 (813)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 459 (813)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-..||..|-++|.+..++..|..++...++.-+..........+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 46788899999999999999998887 5666677766677777777777777766666554433344444555555566
Q ss_pred CHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHH
Q 046631 460 LIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGF 538 (813)
Q Consensus 460 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 538 (813)
+.++|.++++...+.+| ++.....+..+|.-.++++-|+..|+++.+.|+. +...|+.+--+|...++++.+..-|+.
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 66666666665544444 4445555555555666666666666666665532 333444444444444444444444433
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046631 539 SIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFV 618 (813)
Q Consensus 539 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 618 (813)
....--.|+ .-...|..+.......|++..|-+.|+-....+ .-....++
T Consensus 384 Alstat~~~-----------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealn 433 (478)
T KOG1129|consen 384 ALSTATQPG-----------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALN 433 (478)
T ss_pred HHhhccCcc-----------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHH
Confidence 332211111 123345555555555666666666666655532 22234566
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYKIQPS 649 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 649 (813)
.|.-.-.+.|++++|..++.... .+.|+
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~---s~~P~ 461 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAK---SVMPD 461 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhh---hhCcc
Confidence 66655566777777777776665 33555
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.3e-06 Score=78.85 Aligned_cols=197 Identities=11% Similarity=0.056 Sum_probs=98.3
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHH
Q 046631 524 NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALS 600 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 600 (813)
...|+...++.....+.+.. +.|...|..-..+|...|++..|+.=++... ..+...+--+-..+...|+.+.++.
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555555555444432 3355555555566666666666655444332 3445555555555566666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcC
Q 046631 601 LFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEE 679 (813)
Q Consensus 601 ~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 679 (813)
..++-++ +.||.......-. .+....+.++.| ....+.++|.++++-.++. ..+
T Consensus 245 ~iRECLK--ldpdHK~Cf~~YK------klkKv~K~les~-----------------e~~ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 245 EIRECLK--LDPDHKLCFPFYK------KLKKVVKSLESA-----------------EQAIEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred HHHHHHc--cCcchhhHHHHHH------HHHHHHHHHHHH-----------------HHHHhhhhHHHHHHHHHHHHhcC
Confidence 6666555 4555432111000 000111111111 1122345555555554443 333
Q ss_pred CChH----HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 680 GNVL----EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 680 ~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
|..+ .++..+-.+++..|++.+|++...++++.+|++ ...+.--+.+|.-...+++|+.-|++..+.
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d--v~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD--VQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 3311 123333344455566666666666666666666 666666666666666666666666666643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-06 Score=90.31 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=57.4
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCC-ChHHHHHHHHHHHHHhC
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEG-NVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 697 (813)
+...|...|++++|++++++.++ ..|+ +..|..-+.+|-+.|++++|.+.++....-. ..-.+-+.....+.+.|
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 33444555555555555555552 2454 5555555555555555555555555553222 11112233344444555
Q ss_pred CHHHHHHHHHHHhcCCCCC--CC-----chhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 698 HSELAEVVAKKLLEMDTRN--SM-----PGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~--~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
++++|+..+......+-++ +. ..+..--|.+|.+.|++..|++.+..+
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555443332111 00 011122345555556555555544443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-06 Score=86.57 Aligned_cols=253 Identities=16% Similarity=0.069 Sum_probs=158.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCCh
Q 046631 450 YLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNI 529 (813)
Q Consensus 450 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 529 (813)
.+.++..+..+++.|.+.+........+..-++....+|...|.+.++...-....+.|-. ...-|+.+-.+
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~------- 300 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA------- 300 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH-------
Confidence 3556666666666676666665543434445566667778877777777666665544311 11111111111
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCG 609 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 609 (813)
+..+..+|.+.++++.|...|++...+... -....+....++++.......-
T Consensus 301 ---------------------~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~-- 352 (539)
T KOG0548|consen 301 ---------------------LARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY-- 352 (539)
T ss_pred ---------------------HHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--
Confidence 112344666677788888877765421100 1112233445566655555544
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHH
Q 046631 610 IEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIW 686 (813)
Q Consensus 610 ~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 686 (813)
+.|... -...-...+.+.|++..|...|.++++. .| |...|....-+|.+.|.+..|+.=.+.. ..+|+....|
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 334332 1222255677889999999999998865 57 4889999999999999999888765554 5566666677
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 046631 687 GSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
..=+.++....+++.|.+.|.+.++.+|++ ..+...+..++......+...++.+
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale~dp~~--~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALELDPSN--AEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchh--HHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 766777777888999999999999999988 7777777776665433333334433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.6e-07 Score=80.95 Aligned_cols=192 Identities=13% Similarity=0.074 Sum_probs=160.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhc
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA-ITFVAVLSACSY 626 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~ 626 (813)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+ +.|+. ...|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 445667799999999999999998843 467899999999999999999999999998 45554 467777777889
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHH
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEV 704 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 704 (813)
.|.+++|.+.|++.... -.-|. ..+|..++-+-.+.|+.+.|.+.+++. ...|+.+...-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 99999999999999876 22333 788999999999999999999999886 5667666688888999999999999999
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 705 VAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 705 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
.+++.....+-. ...+-+.+.+-...|+-+.|.++=..+..
T Consensus 195 ~~~~~~~~~~~~--A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGGAQ--AESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccccc--HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999998877765 67777777778888999988888777764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-07 Score=90.70 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=116.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY----AGLV 630 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~ 630 (813)
..+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhH
Confidence 34567788889888888765 5667777788899999999999999999987 44444 44455555432 3368
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCH-HHHHHHHHH
Q 046631 631 DEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHS-ELAEVVAKK 708 (813)
Q Consensus 631 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 708 (813)
.+|..+|+++... ..+++.+.+.+..+....|++++|.+++++. ..+|..++++..++-+....|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 9999999998754 3467888899999999999999999998885 56677777888888888888877 777888888
Q ss_pred HhcCCCCC
Q 046631 709 LLEMDTRN 716 (813)
Q Consensus 709 ~~~~~p~~ 716 (813)
+....|..
T Consensus 262 L~~~~p~h 269 (290)
T PF04733_consen 262 LKQSNPNH 269 (290)
T ss_dssp CHHHTTTS
T ss_pred HHHhCCCC
Confidence 88888875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.1e-05 Score=79.05 Aligned_cols=449 Identities=13% Similarity=0.076 Sum_probs=231.4
Q ss_pred Hhhc-CCcchHHHhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCC-------CCCCcccHHHHHHHhhcc
Q 046631 49 ICQE-GRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPY-------TSCDNYTYSSVLKACAET 120 (813)
Q Consensus 49 ~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------~~~~~~~~~~ll~~~~~~ 120 (813)
+|.. |+.|.|.+.++.+++ -..|..|.+.+.+..+++-|.-.+..|....+. ..++ .+=..+.......
T Consensus 737 fyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 3444 777777666655543 567999999999999888887777666432100 1111 2223333344577
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCC-CcccHHHHHH
Q 046631 121 RNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRR-NVVAWNTIVS 199 (813)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~ 199 (813)
|.+++|..++..-.+.. .|=..|-.. |.|++|.++-+.-.+- -..||..-..
T Consensus 814 gMlEeA~~lYr~ckR~D---------LlNKlyQs~------------------g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYD---------LLNKLYQSQ------------------GMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHhc------------------ccHHHHHHHHhhccceehhhhHHHHHH
Confidence 88899988888766542 233444445 9999999887764431 1235555555
Q ss_pred HHHcCCChhHHHHHHHHH----------HHCC---------CCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCC
Q 046631 200 WYVKTERYVEAVRQFRMM----------LRMG---------IRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYV 260 (813)
Q Consensus 200 ~~~~~g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 260 (813)
-+-..++.+.|++.|++- +... -.-|...|.---..+-..|+.+.|+.+|..+..
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 555677788888777652 2111 011222222223333455666666666644432
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHh
Q 046631 261 NDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAV 340 (813)
Q Consensus 261 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~ 340 (813)
|-+++...|-.|+.++|-++-++- .|......|.+.|-..|++.+|+.+| ... .+|...|+.|
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~Ff-TrA---------qafsnAIRlc 1003 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFF-TRA---------QAFSNAIRLC 1003 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHH-HHH---------HHHHHHHHHH
Confidence 334566667778888888777653 45566777888899999999999988 333 3556666655
Q ss_pred cccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHH--------HHHHCCCC--CC
Q 046631 341 SQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVY--------EMQKQGFM--ID 410 (813)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~--pd 410 (813)
-..+--++ ..-+..+..+.+.. ... .--+.-..-....+..|-++|.+.+|+++-- ++...++. .|
T Consensus 1004 KEnd~~d~-L~nlal~s~~~d~v--~aA-rYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD 1079 (1416)
T KOG3617|consen 1004 KENDMKDR-LANLALMSGGSDLV--SAA-RYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD 1079 (1416)
T ss_pred HhcCHHHH-HHHHHhhcCchhHH--HHH-HHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC
Confidence 43332222 11111111100000 000 0000000112223445677777777766422 12222222 34
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCC---CCCChh----hHHH
Q 046631 411 SVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDS---GDRDQA----TWNA 483 (813)
Q Consensus 411 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~----~~~~ 483 (813)
+...+..-..++...+++.|..++....+..- .+. +|+..++.-..++-+.|.. ..|+.. ....
T Consensus 1080 p~ll~RcadFF~~~~qyekAV~lL~~ar~~~~--------Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1080 PKLLRRCADFFENNQQYEKAVNLLCLAREFSG--------ALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------HHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 44444444455556666666555544332210 111 1222222222222222321 123333 3455
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHH---------H----HHHHHHcCCCCchhH
Q 046631 484 MIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQ---------L----HGFSIRYLLDQNVFV 550 (813)
Q Consensus 484 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~---------~----~~~~~~~~~~~~~~~ 550 (813)
+...+.+.|.+..|-+-|.+.-.. ...++++.+.|+.++..- + -+.+.......++.+
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~ 1221 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQT 1221 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHH
Confidence 667778888887777666543221 123455555555443211 1 122233345556666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 046631 551 GTSLIDMYSKSGVINYAANVFA 572 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~ 572 (813)
...++..|.|..-++.--.+|+
T Consensus 1222 mK~I~tFYTKgqafd~LanFY~ 1243 (1416)
T KOG3617|consen 1222 MKDIETFYTKGQAFDHLANFYK 1243 (1416)
T ss_pred HhhhHhhhhcchhHHHHHHHHH
Confidence 6666666666555554444444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.7e-06 Score=85.11 Aligned_cols=295 Identities=10% Similarity=-0.018 Sum_probs=165.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCC---Ch-hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHH---HHHH
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDR---DQ-ATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNV-VTIAS---VLPA 522 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~---ll~~ 522 (813)
+...+...|+.+++.+.+.......+ +. .........+...|++++|.+.+++..+. .|+. ..+.. ....
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~ 89 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGL 89 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHh
Confidence 34444445555555444444222121 11 11222234456677788888877777664 2333 23221 1111
Q ss_pred hccCCChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHH
Q 046631 523 CNPMGNIELGKQLHGFSIRYLLDQN-VFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERA 598 (813)
Q Consensus 523 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 598 (813)
....+....+...+.. .....|+ ......+...+...|++++|.+.+++..+ .+...+..+...|...|++++|
T Consensus 90 ~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 90 GDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred cccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 2223444444444433 1122222 33444556677888888888888887763 3566778888888888999999
Q ss_pred HHHHHHHHhCCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHhccCCHHHHHHH
Q 046631 599 LSLFRSMKGCGI-EPDA--ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHY-C--CVADMLGRVGKVVEAYEF 672 (813)
Q Consensus 599 ~~~~~~m~~~g~-~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~ 672 (813)
+.++++...... .|+. ..|..+...+...|++++|..++++........+..... + .+...+...|..+.+.++
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 998888877432 1222 235567777888899999999888875331111111111 1 233333444433322222
Q ss_pred ---HHHhCcC---CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC----C---CCchhHHHHHHHHHhcCCcHHHH
Q 046631 673 ---VKELGEE---GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR----N---SMPGYHVLLSNIYAEEGNWENVD 739 (813)
Q Consensus 673 ---~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~---~~~~~~~~l~~~~~~~g~~~~A~ 739 (813)
....... +...........++...|+.+.|...++.+....-. . .......+.+.++...|++++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 248 EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 1111111 111112235666777788898888888776542211 1 01445667788899999999999
Q ss_pred HHHHHHHHCC
Q 046631 740 KVRKEMRERG 749 (813)
Q Consensus 740 ~~~~~m~~~~ 749 (813)
+.+......+
T Consensus 328 ~~L~~al~~a 337 (355)
T cd05804 328 ELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHH
Confidence 9999888654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-05 Score=72.85 Aligned_cols=186 Identities=14% Similarity=0.046 Sum_probs=106.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 046631 552 TSLIDMYSKSGVINYAANVFAKIPE-----KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY 626 (813)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 626 (813)
|.-...+.+.|+.+.|.+.+-.|.. -|++|...+.-.- ..+++.+..+-+.-+...+. -...||..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence 3333446788999999999999984 3677776654332 23556666666666666543 335689999999999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHh-ccCCHHHHHHHHHHhCcCCChHHHHHHH---HHHHHHhCCH--
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQ-PSTEHYCCVADMLG-RVGKVVEAYEFVKELGEEGNVLEIWGSL---LGSCRLHGHS-- 699 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~-- 699 (813)
..-++-|-.++-+-... ... .+...|+ |++++. ..-..++|++-+..+...- .+-...+ +..-+..++-
T Consensus 323 Neyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l--~~kLRklAi~vQe~r~~~dd~a 398 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML--TEKLRKLAIQVQEARHNRDDEA 398 (459)
T ss_pred hHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHH
Confidence 99888888776432211 000 1233343 334443 3446777776665542210 0011111 1111111111
Q ss_pred -HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 700 -ELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 700 -~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..++.-+++.+++- -......+++|....++..++++|+.-.+-
T Consensus 399 ~R~ai~~Yd~~LE~Y-----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 399 IRKAVNEYDETLEKY-----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 22333444444432 122455678899999999999999887653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.2e-05 Score=72.89 Aligned_cols=342 Identities=11% Similarity=0.058 Sum_probs=223.8
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHH---HHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHh
Q 046631 381 TMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALL---SAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAK 457 (813)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (813)
-+-..+...|++..|+.-|....+. |+..|..+. ..|...|+..-|..-+..+++..++.......-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 3556667788888888888877653 344444443 346667777777777777777766555444445566778
Q ss_pred cCCHHHHHHHHhhcCCCCCChh----h----------H--HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046631 458 SGLIKTARQIFEKNDSGDRDQA----T----------W--NAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLP 521 (813)
Q Consensus 458 ~g~~~~A~~~~~~~~~~~~~~~----~----------~--~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 521 (813)
.|.++.|..-|+.+....|+.. . | ...+..+...|+...|++....+++-. +.|...|..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 8888888888888765555211 1 1 123445566788888888888888742 345566666677
Q ss_pred HhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHh----HHHHH---------H
Q 046631 522 ACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--KNSV----TYTTM---------I 586 (813)
Q Consensus 522 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l---------i 586 (813)
+|...|++..|+.=+....+..-. +....--+-..+...|+.+.++...++..+ ||-. .|..| +
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 778888888887766666554433 334444566777888888888888887764 3321 22221 2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhc
Q 046631 587 LGYGQHGMSERALSLFRSMKGCGIEPDAIT---FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGR 662 (813)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 662 (813)
......++|.++++..+...+.......++ +..+-.++...|++.+|++...+.. .+.|+ +.++.--.++|.-
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhh
Confidence 334567889999999998888433322333 3444456677889999999888887 67886 9999999999999
Q ss_pred cCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 046631 663 VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVR 742 (813)
Q Consensus 663 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 742 (813)
...+++|+.-|+...+....- ....++++-.+++.+..-. ..+|-+|+ -.+.-+..+..+.|
T Consensus 354 dE~YD~AI~dye~A~e~n~sn-------------~~~reGle~Akrlkkqs~k---RDYYKILG--VkRnAsKqEI~KAY 415 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESN-------------TRAREGLERAKRLKKQSGK---RDYYKILG--VKRNASKQEITKAY 415 (504)
T ss_pred hHHHHHHHHHHHHHHhcCccc-------------HHHHHHHHHHHHHHHHhcc---chHHHHhh--hcccccHHHHHHHH
Confidence 999999999998875433221 1123344444444443333 34565553 23444556777777
Q ss_pred HHHHHCC
Q 046631 743 KEMRERG 749 (813)
Q Consensus 743 ~~m~~~~ 749 (813)
++|.++.
T Consensus 416 RKlAqkW 422 (504)
T KOG0624|consen 416 RKLAQKW 422 (504)
T ss_pred HHHHHhc
Confidence 7777553
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.7e-07 Score=91.18 Aligned_cols=224 Identities=15% Similarity=0.104 Sum_probs=152.4
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHH
Q 046631 454 MYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELG 532 (813)
Q Consensus 454 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 532 (813)
-+.+.|++.+|.-.|+.....+| +...|--|......+++-..|+..+++..+. .|+...
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~Nle----------------- 354 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLE----------------- 354 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHH-----------------
Confidence 35567777777777777655566 6667887777777777777777777776663 454322
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-
Q 046631 533 KQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE- 611 (813)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 611 (813)
+..+|.-.|...|.-..|.+.+ +.-+....+
T Consensus 355 -----------------aLmaLAVSytNeg~q~~Al~~L-------------------------------~~Wi~~~p~y 386 (579)
T KOG1125|consen 355 -----------------ALMALAVSYTNEGLQNQALKML-------------------------------DKWIRNKPKY 386 (579)
T ss_pred -----------------HHHHHHHHHhhhhhHHHHHHHH-------------------------------HHHHHhCccc
Confidence 2223333344444433444333 332221000
Q ss_pred -------CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChH
Q 046631 612 -------PDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVL 683 (813)
Q Consensus 612 -------p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~ 683 (813)
++..+-.. ..+.....+....++|-++....+..+|+.++.+|+-+|.-.|.+++|++-|+.+ ..+|+..
T Consensus 387 ~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~ 464 (579)
T KOG1125|consen 387 VHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY 464 (579)
T ss_pred hhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH
Confidence 00000000 1112222334455666666655466678899999999999999999999999986 6778777
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 684 EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..||.|+..+....+.++|+..|.+++++.|.- .....-|+-.|...|.++||.+.|-.....
T Consensus 465 ~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y--VR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 465 LLWNRLGATLANGNRSEEAISAYNRALQLQPGY--VRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe--eeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 799999999998889999999999999999998 677778888999999999999988777654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.8e-07 Score=87.97 Aligned_cols=192 Identities=16% Similarity=0.111 Sum_probs=130.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIP-EK----NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAV 620 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 620 (813)
|.......+...+...++-+.+..-+++.. ++ +....-.....+...|++++|++++++. .+.......
T Consensus 64 ~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~ 137 (290)
T PF04733_consen 64 PELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALA 137 (290)
T ss_dssp CCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHH
T ss_pred hhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHH
Confidence 333333334333333345555655555443 22 2222222234556679999999988652 345566777
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCChh---HHHHHHHHHhccCCHHHHHHHHHHhCcC-CChHHHHHHHHHHHHHh
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKIQPSTE---HYCCVADMLGRVGKVVEAYEFVKELGEE-GNVLEIWGSLLGSCRLH 696 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 696 (813)
+..+.+.++++.|.+.++.|. .+..|.. .....+..+.-.+.+.+|.-+|+++... +..+.+.+.+..+....
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 888999999999999999997 4555622 2223334433345799999999999655 45555889999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCc-HHHHHHHHHHHHC
Q 046631 697 GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW-ENVDKVRKEMRER 748 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 748 (813)
|++++|+.+++++++.+|.+ +.+...++-+....|+. +.+.+++.+++..
T Consensus 215 ~~~~eAe~~L~~al~~~~~~--~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPND--PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCH--HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999998 88888887778888888 6778888888853
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-06 Score=80.93 Aligned_cols=147 Identities=11% Similarity=0.116 Sum_probs=115.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVG 664 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 664 (813)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. .| +...|..++..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCC
Confidence 4567777887776444333221 11 0122366677777777777643 67 4999999999999999
Q ss_pred CHHHHHHHHHHh-CcCCChHHHHHHHHHHH-HHhCC--HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHH
Q 046631 665 KVVEAYEFVKEL-GEEGNVLEIWGSLLGSC-RLHGH--SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 665 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 740 (813)
++++|...+++. ...|+.+.++..+..++ ...|+ .++|..+++++++.+|++ +..+..++..+.+.|++++|..
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~--~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE--VTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999987 56777777898888874 66676 599999999999999999 9999999999999999999999
Q ss_pred HHHHHHHCC
Q 046631 741 VRKEMRERG 749 (813)
Q Consensus 741 ~~~~m~~~~ 749 (813)
.|+++.+..
T Consensus 166 ~~~~aL~l~ 174 (198)
T PRK10370 166 LWQKVLDLN 174 (198)
T ss_pred HHHHHHhhC
Confidence 999998654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4e-07 Score=80.18 Aligned_cols=122 Identities=13% Similarity=0.084 Sum_probs=96.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-
Q 046631 599 LSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL- 676 (813)
Q Consensus 599 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 676 (813)
..++++.++ +.|+. +..+..++...|++++|...|+... .+.|+ ...|..++.++.+.|++++|+..|++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345666665 45554 4456667788899999999888887 45674 888888899999999999999988886
Q ss_pred CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 677 GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 677 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
...|+.+..|..++.++...|+.++|+..++++++..|++ +.++...+++.
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~--~~~~~~~~~~~ 136 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD--ASWSEIRQNAQ 136 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHH
Confidence 5567677788888889999999999999999999999988 88877776654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-06 Score=83.52 Aligned_cols=181 Identities=10% Similarity=-0.042 Sum_probs=109.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----H
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIPE--KN-S---VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI----T 616 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 616 (813)
....+..+...+.+.|++++|...|+++.. |+ . .++..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555566666667777777776665542 21 1 34555666666667777777777766663 22211 2
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHH
Q 046631 617 FVAVLSACSYA--------GLVDEGLQIFDLMQQEYKIQPST-EHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWG 687 (813)
Q Consensus 617 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 687 (813)
+..+..++... |+.++|.+.++.+.+. .|+. ..+..+..... .... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~------------~~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR------------LAGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH------------HHHHHH
Confidence 33333344333 5566666666666643 3432 22211111100 0000 000123
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRN-SMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.+...+...|++++|...++++++..|+. ..+..+..++.+|.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55667888999999999999999987764 12467889999999999999999999988754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.7e-07 Score=90.05 Aligned_cols=212 Identities=13% Similarity=0.106 Sum_probs=135.2
Q ss_pred cCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHH
Q 046631 423 NLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAF 501 (813)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~ 501 (813)
+.|++..|.-.|+..++.++..-..+..|.......++-..|+..+++..+.+| |.....+|.-.|...|.-..|+..+
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 445555555555555555555555556666666666777777777777666666 6667777777888888888888887
Q ss_pred HHHHHCCCCCCHHHHHHHH-----------HHhccCCChHHHHHHHHH-HHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046631 502 RQMLEHNVTPNVVTIASVL-----------PACNPMGNIELGKQLHGF-SIRYLLDQNVFVGTSLIDMYSKSGVINYAAN 569 (813)
Q Consensus 502 ~~m~~~~~~p~~~t~~~ll-----------~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 569 (813)
+.-+... |.. ..+. ........+....++|-. ....+..+|+.++..|.-.|--.|++++|.+
T Consensus 377 ~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 377 DKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 7765432 110 0000 011111122333444433 3344655777778888878888888888888
Q ss_pred HHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHH
Q 046631 570 VFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 570 ~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
.|+.+. +| |...||-|...++...+.++|+..|++.++ ++|.-+ ....|.-+|...|.+++|...|-..+
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888766 33 677788888888877788888888888777 667654 44455556777777777777766554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.3e-06 Score=81.48 Aligned_cols=224 Identities=12% Similarity=0.044 Sum_probs=148.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046631 481 WNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK 560 (813)
Q Consensus 481 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 560 (813)
+..+-..+...++.++|+.++.++++. .|+..| +|+....++.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~yt----------------------------------aW~~R~~iL~~ 83 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYT----------------------------------VWHFRRLCLEA 83 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHH----------------------------------HHHHHHHHHHH
Confidence 344444555666777777777777763 454433 22222333334
Q ss_pred cC-CHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046631 561 SG-VINYAANVFAKIPE---KNSVTYTTMILGYGQHGMS--ERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGL 634 (813)
Q Consensus 561 ~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 634 (813)
.| .+++++..++++.+ ++..+|+.....+.+.|+. ++++.+++++++.. .-+...|.....++...|++++++
T Consensus 84 L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 84 LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHH
Confidence 44 45677777666552 3455666555555555553 67788888888743 234457777777778888888999
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHhcc---CC----HHHHHHHH-HHhCcCCChHHHHHHHHHHHHHh----CCHHH
Q 046631 635 QIFDLMQQEYKIQP-STEHYCCVADMLGRV---GK----VVEAYEFV-KELGEEGNVLEIWGSLLGSCRLH----GHSEL 701 (813)
Q Consensus 635 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~----~~~A~~~~-~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 701 (813)
+.++++++. .| +..+|+....++.+. |. .++++++. +.+...|+...+|+.+...+... ++..+
T Consensus 163 ~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 163 EYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 988888854 45 466677666666554 22 34667776 45577887777999999999874 34567
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC------------------CcHHHHHHHHHHH
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG------------------NWENVDKVRKEMR 746 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 746 (813)
+...+.++++.+|.. +..+..|+++|+... ..++|.++++.+.
T Consensus 240 ~~~~~~~~~~~~~~s--~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 240 VSSVCLEVLSKDSNH--VFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHHHhhcccCCc--HHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 889999999988887 888899999998642 2356777777763
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.7e-05 Score=78.73 Aligned_cols=196 Identities=12% Similarity=0.036 Sum_probs=97.9
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCC-CCCHhHHHH-HHHHHhcCCChHHHHHHHHHHHHhCCCCcchHH---H
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF-MIDSVTVTA-LLSAASNLRNQDVGKQTHAYLLRHGIHFEGMES---Y 450 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~ 450 (813)
...|..+...+...|+.+.+.+.+....+... .++...... ....+...|+++.+..+++.+.+..+....... .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 34566666777777888887666666554321 223222211 122344567777777777776666544332222 1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCCh
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDRD-QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNI 529 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 529 (813)
+.......+..+.+.+.++......|+ ......+...+...|++++|...+++..+.. |+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~----------------- 146 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PD----------------- 146 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-----------------
Confidence 111112234444455544443222232 2233344455666666666666666666542 32
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC--HhHHHHHHHHHHhcCChHHHHHHH
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-----KN--SVTYTTMILGYGQHGMSERALSLF 602 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~~~~g~~~~A~~~~ 602 (813)
+...+..+...|...|++++|...+++..+ ++ ...|..+...+...|++++|+.++
T Consensus 147 -----------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 147 -----------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred -----------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 223344445555555555555555554432 11 123444555566666666666666
Q ss_pred HHHHh
Q 046631 603 RSMKG 607 (813)
Q Consensus 603 ~~m~~ 607 (813)
++...
T Consensus 210 ~~~~~ 214 (355)
T cd05804 210 DTHIA 214 (355)
T ss_pred HHHhc
Confidence 66543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00083 Score=68.54 Aligned_cols=172 Identities=11% Similarity=0.090 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 046631 494 LEEAFVAFRQMLEHN-VTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQ-NVFVGTSLIDMYSKSGVINYAANVF 571 (813)
Q Consensus 494 ~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 571 (813)
.+...+.++++...- ..|+ .+|...++...+..-+..|..+|.++.+.+..+ ++.+++++++.|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 455556666655432 2333 456667777777777777788888777776655 6777777777665 45667777777
Q ss_pred hhCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhcC-
Q 046631 572 AKIPE--K-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI--TFVAVLSACSYAGLVDEGLQIFDLMQQEYK- 645 (813)
Q Consensus 572 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 645 (813)
+--.+ + +..--...+.-+...++-..|..+|++.+..++.|+.. .|..+|.--+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 65432 2 33334455666666777777777777777765555543 677777766777777777777666665543
Q ss_pred -CCCChhHHHHHHHHHhccCCHH
Q 046631 646 -IQPSTEHYCCVADMLGRVGKVV 667 (813)
Q Consensus 646 -~~p~~~~~~~l~~~~~~~g~~~ 667 (813)
..|....-..+++.|.=.+.+.
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 3333334444555555444433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-06 Score=75.63 Aligned_cols=108 Identities=12% Similarity=-0.025 Sum_probs=94.2
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 046631 635 QIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 635 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 713 (813)
.++++.. .+.|+. +..++..+...|++++|...++.. ...|....+|..++.++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455555 345653 556889999999999999999986 5677777799999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 714 TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 714 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
|++ +..+..++.++...|+.++|...+++..+..
T Consensus 89 p~~--~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASH--PEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCC--cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999 9999999999999999999999999998653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.7e-05 Score=89.15 Aligned_cols=328 Identities=10% Similarity=0.013 Sum_probs=189.1
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCC----C----CCh--hhHHHHHHHHHh
Q 046631 422 SNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSG----D----RDQ--ATWNAMIAGYTQ 490 (813)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~--~~~~~li~~~~~ 490 (813)
...|+.+.+...+..+.......+ .........+...|++++|...+...... . +.. .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 345566555555544321111111 23334455556778888887777653211 1 111 112223344567
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhccCCChHHHHHHHHHHHHc----CC-CCchhHHHHHHHHHHhc
Q 046631 491 NGLLEEAFVAFRQMLEHNVTPNV----VTIASVLPACNPMGNIELGKQLHGFSIRY----LL-DQNVFVGTSLIDMYSKS 561 (813)
Q Consensus 491 ~~~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~ 561 (813)
.|++++|...+++....-...+. ...+.+...+...|+++.|...+...... |- ......+..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 88888888888877653111121 23344445566788888888887766643 11 11123445566677788
Q ss_pred CCHHHHHHHHhhCCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHhc
Q 046631 562 GVINYAANVFAKIPE-------K----NSVTYTTMILGYGQHGMSERALSLFRSMKGCG--IEPD--AITFVAVLSACSY 626 (813)
Q Consensus 562 g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~a~~~ 626 (813)
|++++|...+++... + ....+..+...+...|++++|...+++..... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 888888887766441 1 12234455566677788988888888775531 1122 2234445556677
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHhccCCHHHHHHHHHHhCcCC--Ch---HHHHHHHHHHHHHh
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQPSTEHY-----CCVADMLGRVGKVVEAYEFVKELGEEG--NV---LEIWGSLLGSCRLH 696 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~l~~~~~~~ 696 (813)
.|+.++|...+..+............+ ......+...|+.+.|..++....... .. ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 888888888887775431111111111 112244456788888888877653211 11 11245666777788
Q ss_pred CCHHHHHHHHHHHhcCCCCC----CCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 697 GHSELAEVVAKKLLEMDTRN----SMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
|+.++|...++++++..... .....+..++.+|...|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888877642111 013356677888889999999999888887654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-05 Score=73.04 Aligned_cols=177 Identities=12% Similarity=0.081 Sum_probs=86.5
Q ss_pred cCCHHHHHHHHhhCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 046631 561 SGVINYAANVFAKIP-EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDL 639 (813)
Q Consensus 561 ~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 639 (813)
.+++..+..+.+... +.+..+.+...-...+.|+++.|++-|+...+-+---....|+..+ +..+.|+.+.|+++..+
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 344444555555444 2333344444444445555555555555554432222233343333 22344555555555555
Q ss_pred HHHhcCCC-------------CC---------------hhHHHHHHHHHhccCCHHHHHHHHHHhCcCC----ChHHHHH
Q 046631 640 MQQEYKIQ-------------PS---------------TEHYCCVADMLGRVGKVVEAYEFVKELGEEG----NVLEIWG 687 (813)
Q Consensus 640 ~~~~~~~~-------------p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~ 687 (813)
++++ |++ || +..+|.-..++.+.|+++.|.+.+..|+-+. +.. +..
T Consensus 204 IieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv-TLH 281 (459)
T KOG4340|consen 204 IIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV-TLH 281 (459)
T ss_pred HHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch-hhh
Confidence 5544 321 11 1123333344556777777777777774222 222 222
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
.+.- -...++...+.+-+.-+++++|-+ +.++..+.-+|++..-++-|..++-
T Consensus 282 N~Al-~n~~~~p~~g~~KLqFLL~~nPfP--~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 282 NQAL-MNMDARPTEGFEKLQFLLQQNPFP--PETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHH-hcccCCccccHHHHHHHHhcCCCC--hHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 2211 112345555555566666677665 6666666667777766666666553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-06 Score=72.60 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=90.8
Q ss_pred CCC-CC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh
Q 046631 645 KIQ-PS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 645 ~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
++. ++ ....-.+...+...|++++|..+|+-+ ...|...+.|..|+.+|...|++++|+..|.++..++|++ |..
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--p~~ 105 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--PQA 105 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--chH
Confidence 455 43 555667788889999999999999987 5678888899999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 722 HVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+..++.+|...|+.+.|++-|+....
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999884
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-05 Score=89.09 Aligned_cols=135 Identities=14% Similarity=0.101 Sum_probs=114.7
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 046631 577 KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYC 654 (813)
Q Consensus 577 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 654 (813)
.++..+-.|.....+.|++++|..+++...+ +.||.. ....++..+.+.+++++|...+++.. ...|+ ...+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHH
Confidence 3577888888999999999999999999998 678766 66777888899999999999988887 44786 78888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 655 CVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 655 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.+..++.+.|++++|..+|+++. ..|+...+|..+..++...|+.++|...|+++++....-
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 89999999999999999999985 556667789999999999999999999999998876554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-05 Score=89.95 Aligned_cols=201 Identities=13% Similarity=0.104 Sum_probs=163.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIPEK--------NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITF 617 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 617 (813)
.+...|-..|......+++++|.++++++... -...|.++++.-...|.-+...++|+++.+ ..-....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHH
Confidence 34556777788888889999999999887631 356888888888888888889999999987 33334578
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCC--ChHHHHHHHHHHHH
Q 046631 618 VAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEG--NVLEIWGSLLGSCR 694 (813)
Q Consensus 618 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~--~~~~~~~~l~~~~~ 694 (813)
..|...|.+.+.+++|.++++.|.++|+ -....|..+++.+.+..+-+.|..+++++ ..-| .-..+....+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8889999999999999999999999876 45778889999999999999999988875 2222 23336666677778
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCcc
Q 046631 695 LHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRK 752 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 752 (813)
++||.+++..+|+..+...|.- ...|..+++.-.+.|..+.++.+|++....++.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKR--tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKR--TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccc--hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 8899999999999999999987 7788888888889999999999999999877653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-05 Score=79.01 Aligned_cols=183 Identities=14% Similarity=-0.019 Sum_probs=129.8
Q ss_pred CCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHh---HH
Q 046631 511 PNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLD-Q-NVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSV---TY 582 (813)
Q Consensus 511 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~ 582 (813)
.....+......+...|+++.|...++.+...... + ....+..+..+|.+.|++++|...++++.+ | +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777888899999999999999998775421 2 224677888999999999999999999863 3 222 46
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHH
Q 046631 583 TTMILGYGQH--------GMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHY 653 (813)
Q Consensus 583 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 653 (813)
..+..++... |++++|++.|+++... .|+.. .+..+..... .. ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~-------~~~--------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR-------NRL--------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH-------HHH--------HHHH
Confidence 6666666654 7889999999999984 56543 2222211100 00 000 0112
Q ss_pred HHHHHHHhccCCHHHHHHHHHHh----CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 654 CCVADMLGRVGKVVEAYEFVKEL----GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 654 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
..+...|.+.|++++|+..+++. +..|..+.+|..++.++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35677889999999999988886 33455566899999999999999999998888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.5e-05 Score=86.57 Aligned_cols=221 Identities=13% Similarity=0.080 Sum_probs=171.6
Q ss_pred CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHh-CCCCc----chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHH
Q 046631 409 IDSVTVTALLSAASNLRNQDVGKQTHAYLLRH-GIHFE----GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNA 483 (813)
Q Consensus 409 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 483 (813)
-.+..|...|......++.+.|+++.+++++. ++... .++.+++++-..-|.-+...++|++..+..-....|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 34457777888888888888888888887764 33222 67788888888888888899999988754444557888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcC
Q 046631 484 MIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYL-LDQNVFVGTSLIDMYSKSG 562 (813)
Q Consensus 484 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g 562 (813)
|...|.+.+++++|-++|+.|.+. ..-....|...+..+.+..+-+.|..++.+..+.- -...+....-.+++-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 999999999999999999999885 34566778888888888888889999888877652 2234556667777888999
Q ss_pred CHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCcH
Q 046631 563 VINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI--TFVAVLSACSYAGLV 630 (813)
Q Consensus 563 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~~ 630 (813)
+.+++..+|+.... +-...|+.+|..-.++|+.+.+..+|++.+..++.|-.. .|...+..--..|+-
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 99999999998773 367789999999999999999999999999988777653 555555544445553
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-05 Score=74.39 Aligned_cols=150 Identities=11% Similarity=0.165 Sum_probs=117.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGL 634 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 634 (813)
+..|...|+++......+.+..+. ..+...++.++++..+++..+.+ +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456788888877655544332221 01123566788888888888743 455668888888999999999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHH-hccCC--HHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 635 QIFDLMQQEYKIQPS-TEHYCCVADML-GRVGK--VVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 635 ~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
..|++.. .+.|+ ...+..++.++ ...|+ .++|.+++++. ..+|+.+.++..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888 45784 88888888874 67777 59999999987 567777779999999999999999999999999
Q ss_pred hcCCCCC
Q 046631 710 LEMDTRN 716 (813)
Q Consensus 710 ~~~~p~~ 716 (813)
+++.|.+
T Consensus 171 L~l~~~~ 177 (198)
T PRK10370 171 LDLNSPR 177 (198)
T ss_pred HhhCCCC
Confidence 9999887
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.8e-06 Score=85.48 Aligned_cols=214 Identities=11% Similarity=-0.002 Sum_probs=158.8
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCHhHHHHHHHHHHhc
Q 046631 515 TIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--EKNSVTYTTMILGYGQH 592 (813)
Q Consensus 515 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~ 592 (813)
.-..+...+...|-...|..+++.+. .+.-+|.+|+..|+..+|..+...-. +||...|..+.+.....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence 33444555566677777777776554 36677888888888888888776544 45777788777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHH
Q 046631 593 GMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYE 671 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 671 (813)
--+++|.++++..-.. .-..+.......+++.++.+.|+.-. .+.| -..+|-.++.+..+.++++.|.+
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 7778888887764432 11111222234688888888887766 4566 37888888889999999999988
Q ss_pred HHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 672 FVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 672 ~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.|... ..+|+....||++-.+|.+.++-.+|...++++++-+-++ ...+....-+..+.|.|++|.+.+.++.+..
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~--w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH--WQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC--CeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88775 6788888899999999999999999999999999888666 5555555567788999999999998887653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.4e-06 Score=85.28 Aligned_cols=212 Identities=17% Similarity=0.105 Sum_probs=174.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNP 525 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 525 (813)
.+...+...+.+.|-...|..+|+++. .|...|.+|+..|+..+|..+..+-.+ -+||..-|..+.....+
T Consensus 399 q~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 566788999999999999999999988 788899999999999999999888777 37899999988888887
Q ss_pred CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHH
Q 046631 526 MGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLF 602 (813)
Q Consensus 526 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 602 (813)
..-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.++++.|.+.|
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 77788888887754332 1222222334578999999999865532 4678888888899999999999999
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhC
Q 046631 603 RSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELG 677 (813)
Q Consensus 603 ~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 677 (813)
..-.. ..||.. .|+.+-.+|.+.|+-.+|...+.+..+- + .-+...|...+-...+.|.+++|++.+.++.
T Consensus 543 ~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 543 HRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99888 678765 7999999999999999999999999865 4 3346667777888889999999999998873
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.9e-07 Score=56.50 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=24.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046631 543 LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP 575 (813)
Q Consensus 543 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (813)
|+.||..+|++||++|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00034 Score=64.86 Aligned_cols=251 Identities=14% Similarity=0.053 Sum_probs=150.7
Q ss_pred HHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHH-
Q 046631 455 YAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGK- 533 (813)
Q Consensus 455 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~- 533 (813)
|.-.|.+..++..-........++..---+-.+|...|.+...+. +.... -.|....+..+.......++.+.-.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhHHHHH
Confidence 333455555554444433222223333334455555555433222 11111 1333333333333333334333322
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 046631 534 QLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD 613 (813)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 613 (813)
.+.+.+.......+......-...|++.|++++|++.......-+... .=+..+.+..+.+-|.+.+++|.+ --+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~---ide 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAA--LNVQILLKMHRFDLAEKELKKMQQ---IDE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHc---cch
Confidence 234444444434443333444456888999999999888743323333 234455677788999999999987 234
Q ss_pred HHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHH
Q 046631 614 AITFVAVLSACSY----AGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGS 688 (813)
Q Consensus 614 ~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~ 688 (813)
..|.+.|..++.+ .+.+.+|.-+|++|.+ +..|+..+.+....+....|++++|..+++.. ...+..+++...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5677777777654 4568899999999985 35788888888888999999999999998886 444566667766
Q ss_pred HHHHHHHhCC-HHHHHHHHHHHhcCCCCC
Q 046631 689 LLGSCRLHGH-SELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 689 l~~~~~~~g~-~~~a~~~~~~~~~~~p~~ 716 (813)
++-.-...|. .+--.+...++....|..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 6666666664 455566777777777775
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.7e-06 Score=73.21 Aligned_cols=108 Identities=17% Similarity=0.109 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 046631 636 IFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 636 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 713 (813)
.++.+. ...|+ ......++..+...|++++|.+.++.+ ...|..+..|..+...+...|++++|...++++++.+
T Consensus 5 ~~~~~l---~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLL---GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHH---cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444 44664 566777888888889999999888886 4466666688888999988999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 714 TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 714 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
|.+ +..+..++.+|...|++++|...+++..+.
T Consensus 82 p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDD--PRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888 888888999999999999999999888854
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.7e-05 Score=70.52 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=97.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 046631 583 TTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLG 661 (813)
Q Consensus 583 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 661 (813)
..+-..+...|+-+....+..+.... ..-|......++....+.|++.+|...+++.. ...| |...|+.++-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~---~l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA---RLAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh---ccCCCChhhhhHHHHHHH
Confidence 44455566666666666666554431 12233344446666667777777777777666 2344 4777777777777
Q ss_pred ccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHH
Q 046631 662 RVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 662 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 740 (813)
+.|++++|..-|.+. ...|+.+.+.+.|+..+.-.||.+.|+.++..+....+.+ ...-..++.+....|++++|..
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad--~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD--SRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHhhcCChHHHHh
Confidence 777777777665554 4555555566777777777777777777777776666666 5666666666777777777766
Q ss_pred HHH
Q 046631 741 VRK 743 (813)
Q Consensus 741 ~~~ 743 (813)
+..
T Consensus 224 i~~ 226 (257)
T COG5010 224 IAV 226 (257)
T ss_pred hcc
Confidence 653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.3e-05 Score=82.19 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=110.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHH
Q 046631 543 LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFV 618 (813)
Q Consensus 543 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~ 618 (813)
.+..+...+-.|.....+.|.+++|..+++... .| +...+..++..+.+.+++++|+..+++... ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 345568888899999999999999999999887 34 567888899999999999999999999998 567665 555
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
.+..++.+.|.+++|..+|+++... .|+ ..++..++.++.+.|+.++|...|++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666888999999999999999863 565 888999999999999999999999987
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00076 Score=80.69 Aligned_cols=368 Identities=10% Similarity=-0.048 Sum_probs=193.1
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcch--HHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcch
Q 046631 270 IFMYAELGCFDFARKIFDNCLERNTEV--WNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELD 347 (813)
Q Consensus 270 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 347 (813)
...+...|++.+|..........+... ...........|++..+...+ ..+.......+..........+...|+.+
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l-~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECL-NALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHH-HhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 334555566666666555543332111 111223345567777776666 44422111112222233344445678888
Q ss_pred HHHHHHHHHHHhcccchhhhhccCCCCC--cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCH----hHHHHHHHHH
Q 046631 348 LGQQLHAYIIKNFVALPVIVLNAVIERD--VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDS----VTVTALLSAA 421 (813)
Q Consensus 348 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~ 421 (813)
++..++..+.......+.. ..+. ......+...+...|++++|...+++..+.--..+. .....+...+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIE-----LDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred HHHHHHHHHHHhccccCcc-----cchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 8888887775522111000 0011 111222334556889999999999988763111121 2334444556
Q ss_pred hcCCChHHHHHHHHHHHHhCCC----Cc--chHHHHHHHHHhcCCHHHHHHHHhhcCCC-----C---C-ChhhHHHHHH
Q 046631 422 SNLRNQDVGKQTHAYLLRHGIH----FE--GMESYLIDMYAKSGLIKTARQIFEKNDSG-----D---R-DQATWNAMIA 486 (813)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~----~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~-~~~~~~~li~ 486 (813)
...|+++.|...+......... .. .....+...+...|++++|...+++.... . + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 6788888888888777653221 11 23345566777788888888877653211 1 1 1223444555
Q ss_pred HHHhCCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhccCCChHHHHHHHHHHHHcCC--CCchh--H--HHHHHH
Q 046631 487 GYTQNGLLEEAFVAFRQMLEH--NVTPN--VVTIASVLPACNPMGNIELGKQLHGFSIRYLL--DQNVF--V--GTSLID 556 (813)
Q Consensus 487 ~~~~~~~~~~A~~~~~~m~~~--~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~--~--~~~li~ 556 (813)
.+...|++++|...+.+.... ...+. ...+..+.......|+.+.|...+.......- ..... . ....+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 666778888888887776542 11121 22333344455667777777777766644210 00000 0 011123
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC---H----hHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHH
Q 046631 557 MYSKSGVINYAANVFAKIPEKN---S----VTYTTMILGYGQHGMSERALSLFRSMKGC----GIEPDA-ITFVAVLSAC 624 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~a~ 624 (813)
.+...|+.+.|.+.+.....+. . ..+..+..++...|++++|...+++.... |..++. .+...+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3445677777777766554321 0 11234555566667777777777666542 222221 2344445566
Q ss_pred hccCcHHHHHHHHHHHHHh
Q 046631 625 SYAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~ 643 (813)
...|+.++|...+.+..+.
T Consensus 742 ~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6677777777776666644
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.2e-07 Score=55.95 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=14.5
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 645 KIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 645 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
|+.||..+|+.|+++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.1e-05 Score=74.80 Aligned_cols=191 Identities=12% Similarity=0.077 Sum_probs=143.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 046631 553 SLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTMILGYGQHG-MSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG 628 (813)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 628 (813)
.+-..+...+..++|+.+..++.+ | +..+|+.-...+...| ++++++..++++.+.+. .+..+|+.-...+.+.|
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcC
Confidence 344445667788899999888773 3 5567777777777777 67999999999998542 23335665544555566
Q ss_pred c--HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh---CCH--
Q 046631 629 L--VDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH---GHS-- 699 (813)
Q Consensus 629 ~--~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~---g~~-- 699 (813)
. .+++..+++++. .+.| +..+|.....++.+.|++++|++.++++ ..++....+|+.....+.+. |..
T Consensus 121 ~~~~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 5 367888888888 4467 4889999999999999999999999997 45566666899888777654 222
Q ss_pred --HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhc----CCcHHHHHHHHHHHHCC
Q 046631 700 --ELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE----GNWENVDKVRKEMRERG 749 (813)
Q Consensus 700 --~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~ 749 (813)
+..+....+++..+|++ .+.+..++.++... ++..+|.+...+..+.+
T Consensus 198 ~~e~el~y~~~aI~~~P~N--~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 198 MRDSELKYTIDAILANPRN--ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred cHHHHHHHHHHHHHhCCCC--cCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 46778888999999999 89999999999873 45577888888776543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00019 Score=72.58 Aligned_cols=145 Identities=17% Similarity=0.117 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVA-VLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVAD 658 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 658 (813)
.+.-..-.+...|++++|+..++.++. -.|+...|.. ....+...++.++|.+.++++. ...|+ ......+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHH
Confidence 333334445567899999999999888 4566655554 4457889999999999999998 45787 666778899
Q ss_pred HHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHH
Q 046631 659 MLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWEN 737 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 737 (813)
+|.+.|+..+|+..++.. ...|+.+..|..|..+|...|+..++... .+..|+..|+|++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-------------------~AE~~~~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-------------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-------------------HHHHHHhCCCHHH
Confidence 999999999999998886 56677888999999999999987776554 3457888899999
Q ss_pred HHHHHHHHHHCC
Q 046631 738 VDKVRKEMRERG 749 (813)
Q Consensus 738 A~~~~~~m~~~~ 749 (813)
|.......++..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999998888653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5e-05 Score=70.36 Aligned_cols=155 Identities=16% Similarity=0.066 Sum_probs=116.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 046631 552 TSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG 628 (813)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 628 (813)
..+-..+.-.|+-+....+..... ..|....+.++....+.|++..|+..+++.... -++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 334445555666666666665543 235556666888888889999999999988874 3566678888888899999
Q ss_pred cHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCC-hHHHHHHHHHHHHHhCCHHHHHHHH
Q 046631 629 LVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEGN-VLEIWGSLLGSCRLHGHSELAEVVA 706 (813)
Q Consensus 629 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 706 (813)
++++|..-|.+.. .+.|+ ...++.|+..|.-.|+++.|..++......|. ...+-..|.-.....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999998888887 44664 77788888889999999999998888765553 3337788888888889999988876
Q ss_pred HHHh
Q 046631 707 KKLL 710 (813)
Q Consensus 707 ~~~~ 710 (813)
.+-+
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00047 Score=69.82 Aligned_cols=177 Identities=21% Similarity=0.130 Sum_probs=131.1
Q ss_pred CHHHHHHHHhhCCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046631 563 VINYAANVFAKIPE------KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQI 636 (813)
Q Consensus 563 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~ 636 (813)
++.++...-+.+.. ++...+...+.+.........+-.++-+-.+. .-...-|..-+ .+...|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 45555555555552 34555555555544433333333333222221 11122233333 45678999999999
Q ss_pred HHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 637 FDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 637 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
++.+.+. .|+ +......++.+.+.++.++|.+.++++ ...|+.+..+..+..++.+.|+..+|+..+++....+|
T Consensus 329 l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999855 675 777888999999999999999999997 56677666899999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 715 RNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 715 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
++ +..|.+|+..|...|+..+|...+.++..
T Consensus 406 ~d--p~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 406 ED--PNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CC--chHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99 99999999999999999999998877764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00084 Score=75.46 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=103.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 046631 447 MESYLIDMYAKSGLIKTARQIFEKNDSGDRDQA-TWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNP 525 (813)
Q Consensus 447 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 525 (813)
....|+..|...+++++|.++.+......|+.. .|-.+...+.+.++.+++..+ .+ +.....
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~~~~ 95 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDSFSQ 95 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhhccc
Confidence 334455555556666666666555443344332 233333344444444443333 11 111222
Q ss_pred CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 046631 526 MGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLF 602 (813)
Q Consensus 526 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 602 (813)
..++.....+...+.+.+ -+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|+.. +.++|++++
T Consensus 96 ~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 96 NLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred ccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 222222222333333322 1222445555666666666666666665552 2555666666666655 666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCC
Q 046631 603 RSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEGN 681 (813)
Q Consensus 603 ~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 681 (813)
.+.+.. +...+++..+.++|.++... .|+ ...+..+....... + ..+.
T Consensus 173 ~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~------------~-~~~~ 221 (906)
T PRK14720 173 KKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGH------------R-EFTR 221 (906)
T ss_pred HHHHHH---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhh------------h-ccch
Confidence 555542 33334445555555555422 332 22221111111111 0 0111
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 682 VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
....+.-|-..|...++++++..+++.+++.+|.+ .....-++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n--~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN--NKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc--hhhHHHHHHHHH
Confidence 22244444455555556666666666666666665 444444444444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00013 Score=64.54 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=54.0
Q ss_pred cCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCcCC-Ch---HHHHHHHHHHHHHhCCHHH
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGEEG-NV---LEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~l~~~~~~~g~~~~ 701 (813)
.++...+...++.+.+.++-.| .......+...+...|++++|...|+.+.... +. ..+...|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444555555555544421111 12333344455555555555555555543221 11 1133344555555555555
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
|+..++... -.+-. +..+.++|++|.+.|++++|...|++
T Consensus 104 Al~~L~~~~-~~~~~--~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP-DEAFK--ALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc-CcchH--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554421 11111 44555666666666666666666654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.9e-05 Score=66.20 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=90.2
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-C
Q 046631 601 LFRSMKGCGIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-G 677 (813)
Q Consensus 601 ~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 677 (813)
.+++... ..|+. .....+...+...|++++|...++.+... .| +...+..++.++.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 45544 34556667788899999999999888754 46 5788889999999999999999988887 5
Q ss_pred cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 678 EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..|..+..|..+...+...|+.++|...++++++.+|++
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 566666788889999999999999999999999999987
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.8e-06 Score=52.79 Aligned_cols=35 Identities=37% Similarity=0.590 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 046631 192 VAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPST 226 (813)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 226 (813)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0013 Score=60.69 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=103.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 046631 554 LIDMYSKSGVINYAANVFAKIPE--KNS-VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLV 630 (813)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 630 (813)
++-+..-+|+.+.|...++.+.. |+. ..-..-..-+-..|++++|+++++.+++.. +.|.+++.-=+...-..|+-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 33344445555555555555432 111 111111222345677888888888888765 44555666555555667777
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC---CHHHHHHHH
Q 046631 631 DEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG---HSELAEVVA 706 (813)
Q Consensus 631 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~ 706 (813)
-+|++-+....+. +.-|...|.-+.++|...|++++|.--++++ ..+|..+..+..+...+...| +.+.+.+.+
T Consensus 137 l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7888777777754 3447888888888888888888888888886 456766656666666665554 567788899
Q ss_pred HHHhcCCCCC
Q 046631 707 KKLLEMDTRN 716 (813)
Q Consensus 707 ~~~~~~~p~~ 716 (813)
.+++++.|.+
T Consensus 215 ~~alkl~~~~ 224 (289)
T KOG3060|consen 215 ERALKLNPKN 224 (289)
T ss_pred HHHHHhChHh
Confidence 9999998865
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.4e-05 Score=76.92 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=81.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh
Q 046631 618 VAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH 696 (813)
Q Consensus 618 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 696 (813)
..|+..+...++++.|..+|+++.+. .|+. ...++.++...++-.+|++++++. ...|.....+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34455555566677777777776644 3443 334566666666666777766664 34454555666666777777
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 697 GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
++++.|+.+++++.++.|.+ ...+..|+.+|...|++++|+..+..+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~--f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSE--FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777777777 7777777777777777777777776654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00012 Score=64.78 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=102.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHH
Q 046631 579 SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA--ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYC 654 (813)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 654 (813)
...|..++..+. .++...+...++++.+....-.. .....+...+...|++++|...|+..... .-.|. .....
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 456777777774 88999999999999986322211 23444556788999999999999999976 42332 34556
Q ss_pred HHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 046631 655 CVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLL 710 (813)
Q Consensus 655 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 710 (813)
.|..++...|++++|+..++.....+..+.++..++..+...|+.++|...|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 78899999999999999999887666666688889999999999999999998864
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0001 Score=75.45 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGL 629 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~ 629 (813)
...+|+..+...++++.|.++|+++.+.++.....++..+...++-.+|++++++.++. .+-+...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 34456666777889999999999998777777777888888889999999999999874 23355566666777889999
Q ss_pred HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCC
Q 046631 630 VDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEG 680 (813)
Q Consensus 630 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 680 (813)
.+.|+.+.+++. .+.|+ ..+|..|+.+|...|+++.|+-.++.++..+
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999998 55886 8899999999999999999999999987544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0038 Score=70.41 Aligned_cols=241 Identities=12% Similarity=0.053 Sum_probs=129.3
Q ss_pred CCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHH
Q 046631 372 IERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYL 451 (813)
Q Consensus 372 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 451 (813)
.+.+...|..|+..+...+++++|.++.+...+. .|+...+-.+ +
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~---------------------------------~ 71 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYI---------------------------------S 71 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHH---------------------------------H
Confidence 3455666777777777777777777777755553 4444433211 2
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHH
Q 046631 452 IDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIEL 531 (813)
Q Consensus 452 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 531 (813)
...+.+.++.+++..+ .++..+....++.-+..+...|... .-+...+..+..+|.+.|+.++
T Consensus 72 G~l~~q~~~~~~~~lv---------------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~k 134 (906)
T PRK14720 72 GILSLSRRPLNDSNLL---------------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKK 134 (906)
T ss_pred HHHHHhhcchhhhhhh---------------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHH
Confidence 2233333333322222 2222233333332233333333332 1222344555555556666666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE 611 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 611 (813)
+..+++++.+.. +-|+.+.|.+...|... ++++|.+++.+. +..|...+++..+.++|.++.. ..
T Consensus 135 a~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~ 199 (906)
T PRK14720 135 LKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YN 199 (906)
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh--cC
Confidence 666666665555 44666777777778777 888888876553 3446667788888888888887 34
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHH
Q 046631 612 PDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLL 690 (813)
Q Consensus 612 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~ 690 (813)
|+...+ -.++.+.+....+..--+.++.-+...|-..++|++++.+++.+- .++...-...-++
T Consensus 200 ~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 200 SDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred cccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 443322 122222232221222224455556667777777888888877762 2332222445555
Q ss_pred HHHH
Q 046631 691 GSCR 694 (813)
Q Consensus 691 ~~~~ 694 (813)
.+|.
T Consensus 265 ~~y~ 268 (906)
T PRK14720 265 RFYK 268 (906)
T ss_pred HHHH
Confidence 5554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.5e-06 Score=51.37 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCH
Q 046631 377 VSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDS 411 (813)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 411 (813)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0016 Score=60.49 Aligned_cols=168 Identities=11% Similarity=0.120 Sum_probs=119.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-
Q 046631 499 VAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK- 577 (813)
Q Consensus 499 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 577 (813)
++.+.+.......+......-...|+..++.++|.+...... +......=+..+.+..+.+-|.+.++.|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344445444444444444444556777888888877665411 2223333355567888899999999999864
Q ss_pred CHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhH
Q 046631 578 NSVTYTTMILGYGQ----HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEH 652 (813)
Q Consensus 578 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 652 (813)
+-.+.+.|..++.+ .+.+.+|.-+|++|-+. ..|+..+.+..+.++...|++++|..+++....+ .+ ++.+
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k---d~~dpet 243 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK---DAKDPET 243 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc---cCCCHHH
Confidence 45677777777654 35689999999999875 6899999999999999999999999999999865 34 4777
Q ss_pred HHHHHHHHhccCCHHHHH-HHHHHh
Q 046631 653 YCCVADMLGRVGKVVEAY-EFVKEL 676 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~-~~~~~~ 676 (813)
...++-+-...|.-.++. +.+.++
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHH
Confidence 777777777777655543 556665
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1e-05 Score=50.78 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 046631 191 VVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRP 224 (813)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 224 (813)
+.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00076 Score=62.11 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFV-AVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVAD 658 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 658 (813)
.|..++-+....|+.+.|...++++... + |...-.. .-..-+...|++++|.++++.+.++ +| |..++..-+-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 3445566667789999999999999886 3 4443222 2222345689999999999999976 57 5778888888
Q ss_pred HHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC---
Q 046631 659 MLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN--- 734 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~--- 734 (813)
+.-..|+--+|++-+... ..-++..+.|..|...|...|+++.|...+++++-..|.+ +.++--+++++...|.
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n--~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN--PLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHH
Confidence 888888888888776664 4445666799999999999999999999999999999999 9999999999888774
Q ss_pred cHHHHHHHHHHHHCCC
Q 046631 735 WENVDKVRKEMRERGL 750 (813)
Q Consensus 735 ~~~A~~~~~~m~~~~~ 750 (813)
.+-|.+++.+..+...
T Consensus 207 ~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 207 LELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHHhCh
Confidence 5578888888886543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=50.19 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCC
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMI 409 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 409 (813)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00015 Score=74.84 Aligned_cols=103 Identities=11% Similarity=0.109 Sum_probs=74.6
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCC
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGH 698 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 698 (813)
...+...|++++|+..|+++++ ..|+ ...|..++.+|.+.|++++|+..++++ ...|+.+.+|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3455667788888888888774 3564 677777778888888888888877776 4556566677777778888888
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
+++|+..++++++++|++ +.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~--~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGD--SRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Confidence 888888888888888877 6665555433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00019 Score=68.51 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=91.0
Q ss_pred CC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC---CHHHHHHHHHHHhcCCCCCCCchh
Q 046631 647 QP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG---HSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 647 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
+| |...|..|+..|.+.|+++.|..-|.+. ...|+.++++..+..++..+. ...++..++++++..+|.+ ...
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~--ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN--IRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc--HHH
Confidence 57 5999999999999999999999998886 678888888888877776553 5678999999999999999 999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 722 HVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
..+|+..++.+|++.+|...|+.|.+...
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999997654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00012 Score=59.40 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=75.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
.+..++..+...|++++|...++++ ...|....+|..+...+...|++++|...+++++...|.+ ...+..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN--AKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--hhHHHHHHHHHH
Confidence 3556777778888888888888876 3445444578888888888899999999999999888887 677888888999
Q ss_pred hcCCcHHHHHHHHHHHHC
Q 046631 731 EEGNWENVDKVRKEMRER 748 (813)
Q Consensus 731 ~~g~~~~A~~~~~~m~~~ 748 (813)
..|++++|...+++..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999988887643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00014 Score=68.83 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=48.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCH
Q 046631 589 YGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKV 666 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 666 (813)
+.+.+++++|+..|.+.++ +.| |.+.|..=..+|++.|.++.|++-.+..+ .+.|. ..+|..|+.+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence 4455566666666666665 332 34445555556666666666665554444 44554 55555555555555555
Q ss_pred HHHHHHHHHh-CcCCChH
Q 046631 667 VEAYEFVKEL-GEEGNVL 683 (813)
Q Consensus 667 ~~A~~~~~~~-~~~~~~~ 683 (813)
++|++.|++. ...|+..
T Consensus 166 ~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHhhhccCCCcH
Confidence 5555555543 3444444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.046 Score=56.42 Aligned_cols=64 Identities=8% Similarity=0.179 Sum_probs=40.1
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHhhCCCChhHHHHHHHHHHHhC
Q 046631 190 NVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI-SFVNVFPALSSLGDYKSADVVYGLLVKLG 256 (813)
Q Consensus 190 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 256 (813)
|+.+|+.||+-+-.+ .++++.+.+++|.. +-|+.. .|..-|..-....+++....+|.+.+..-
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV 83 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 666777777765554 77777777777765 344433 55555666666666666666666655544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00023 Score=67.45 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=80.4
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
-..+.+++.+|+..|.+++ .+.|+ +..|..-..+|.+.|.++.|++-.+.. ..+|.....|..|+.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 4567788999999999888 66884 777888889999999999998776664 667777779999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 701 LAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 701 ~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
+|++.|+++++++|++ .++...|
T Consensus 167 ~A~~aykKaLeldP~N--e~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDN--ESYKSNL 189 (304)
T ss_pred HHHHHHHhhhccCCCc--HHHHHHH
Confidence 9999999999999998 5444433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00035 Score=59.65 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhC-cCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC-CchhHHHHHH
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKELG-EEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS-MPGYHVLLSN 727 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~~~l~~ 727 (813)
+..++..+.+.|++++|.+.++++. ..|+ ...++..++.++...|+++.|...+++++...|++. .+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344444455555555555554441 1111 122444455555555555555555555555544421 1233445555
Q ss_pred HHHhcCCcHHHHHHHHHHHHC
Q 046631 728 IYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~~ 748 (813)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00051 Score=58.61 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCC---hHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELG-EEGN---VLEIWGSLL 690 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~~l~ 690 (813)
++..+...+...|++++|...|..+...+.-.| ....+..++.++.+.|++++|.+.++.+. ..|+ .+.++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445566667777888888888877775421111 13456667888888888888888888763 2232 344777888
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 691 GSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.++...|+.++|...++++++..|++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 88888888888888888888888886
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.9e-05 Score=61.17 Aligned_cols=79 Identities=24% Similarity=0.266 Sum_probs=49.1
Q ss_pred cCCHHHHHHHHHHhC-cCC-C-hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHH
Q 046631 663 VGKVVEAYEFVKELG-EEG-N-VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVD 739 (813)
Q Consensus 663 ~g~~~~A~~~~~~~~-~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 739 (813)
.|+++.|+.+++++. ..| + ....|..+..++.+.|++++|..++++ .+.++.+ .....+++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhCCHHHHH
Confidence 356666666666652 222 1 223555667777777777777777766 5555555 566666677777777777777
Q ss_pred HHHHH
Q 046631 740 KVRKE 744 (813)
Q Consensus 740 ~~~~~ 744 (813)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00037 Score=72.00 Aligned_cols=100 Identities=10% Similarity=-0.049 Sum_probs=81.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV 663 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 663 (813)
....+...|++++|++.|+++++.. +-+...|..+..+|...|++++|+..++++. .+.|+ ...|..++.+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999853 2345578888889999999999999999998 45775 88899999999999
Q ss_pred CCHHHHHHHHHHh-CcCCChHHHHHH
Q 046631 664 GKVVEAYEFVKEL-GEEGNVLEIWGS 688 (813)
Q Consensus 664 g~~~~A~~~~~~~-~~~~~~~~~~~~ 688 (813)
|++++|+..+++. ...|+...+...
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999986 555666634333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.11 Score=57.33 Aligned_cols=217 Identities=11% Similarity=0.114 Sum_probs=143.2
Q ss_pred CChhHHHHHHcccCCCCc-ccHHHHHHHH--HcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNV-VAWNTIVSWY--VKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYG 250 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~-~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 250 (813)
+++..|....+.+.++.+ ..|..++.++ .|.|+.++|..+++.....+.. |..|...+-..|...+..++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 677777777776654222 3455555554 5799999999999888765544 77789999999999999999999999
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHhcCChH----HHHHHHhhcCCCCcchHHHHHHHHHhC-CCc---------hHHHHH
Q 046631 251 LLVKLGSEYVNDLFVASSAIFMYAELGCFD----FARKIFDNCLERNTEVWNTMIGGYVQN-NHP---------VEAIEL 316 (813)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~---------~~A~~~ 316 (813)
.+.+.. |+......+..+|.|.+.+. .|.+++...++.--..|+ +++.+.+. ... .-|.+.
T Consensus 102 ~~~~~~----P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 102 RANQKY----PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHhhC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHH
Confidence 999887 77777778888888887655 456667765555444454 44444332 112 234445
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHH
Q 046631 317 FVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGL 396 (813)
Q Consensus 317 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 396 (813)
+...+.+.|-.-+..-...-+..+...+++++|..++..-.- +.+..-+...-+.-+..+...+++.+..
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la----------~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLA----------EKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHH----------HhccccchHHHHHHHHHHHHhcChHHHH
Confidence 534444444222333334444555677888888887743222 1112234444556677778889999999
Q ss_pred HHHHHHHHCC
Q 046631 397 MLVYEMQKQG 406 (813)
Q Consensus 397 ~~~~~m~~~g 406 (813)
++-.++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 9888888875
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0014 Score=64.78 Aligned_cols=89 Identities=15% Similarity=0.071 Sum_probs=60.3
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChH----HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhc
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVL----EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE 732 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 732 (813)
+-..+.|++.+|.+.+.+. ...|+.. ..|.....+..+.|+.++|+.-.++++.++|.- ...|..-++++...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy--ikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY--IKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH--HHHHHHHHHHHHHH
Confidence 4455677777777777665 3333221 145555666667778888888888888777776 66677777777777
Q ss_pred CCcHHHHHHHHHHHHC
Q 046631 733 GNWENVDKVRKEMRER 748 (813)
Q Consensus 733 g~~~~A~~~~~~m~~~ 748 (813)
++|++|.+.+++..+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888877777654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00076 Score=58.58 Aligned_cols=101 Identities=12% Similarity=-0.020 Sum_probs=85.2
Q ss_pred CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhH
Q 046631 645 KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 645 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 722 (813)
|+.++ ....-....-+...|++++|..+|.-+ ..++..++.|..|..+|...+++++|...|..+..+++++ |...
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--p~p~ 108 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--YRPV 108 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--CCcc
Confidence 55554 333445566667899999999999987 3456667789999999999999999999999999999988 8888
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
...+.+|...|+.+.|+.-|+...+
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh
Confidence 8999999999999999999998884
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.13 Score=56.71 Aligned_cols=183 Identities=13% Similarity=0.043 Sum_probs=79.9
Q ss_pred hcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHH
Q 046631 275 ELGCFDFARKIFDNCLE---RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQ 351 (813)
Q Consensus 275 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 351 (813)
+.|+.++|..+++.... .|..|...+-..|...++.++|..+|.+... ..|+..-...+..++.+.+++..-.+
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544443322 1444555555555555555555555533322 23444445555555555555444433
Q ss_pred HHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCC----------cHHHHHHHHHHHHCC-CCCCHhHHHHHHHH
Q 046631 352 LHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGL----------DDEGLMLVYEMQKQG-FMIDSVTVTALLSA 420 (813)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~ 420 (813)
+--++-+.++ .+...+..+++.+.+.-. ..-|.+.++.+.+.+ ---+..-...-+..
T Consensus 132 aa~~LyK~~p------------k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 132 AALQLYKNFP------------KRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHhCC------------cccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 3333333221 223333333333322211 112334444444433 11111112222333
Q ss_pred HhcCCChHHHHHHHHHHHHhC-CCCc-chHHHHHHHHHhcCCHHHHHHHHhhcC
Q 046631 421 ASNLRNQDVGKQTHAYLLRHG-IHFE-GMESYLIDMYAKSGLIKTARQIFEKND 472 (813)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 472 (813)
+...+.+++|.+++..-.... ...+ ..-+.-++.+...+++.+..++-.++.
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 445566666666663322222 2222 444555666666666666655555544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.2e-05 Score=56.03 Aligned_cols=64 Identities=22% Similarity=0.166 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC-CcHHHHHHHHHHHHC
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG-NWENVDKVRKEMRER 748 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 748 (813)
+.+|..++..+...|++++|+..|+++++.+|++ +..+..++.+|.+.| ++++|.+.+++..+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN--AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH--HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3478888888999999999999999999999988 888999999999998 789999998887753
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.3e-05 Score=46.24 Aligned_cols=31 Identities=35% Similarity=0.588 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 046631 192 VAWNTIVSWYVKTERYVEAVRQFRMMLRMGI 222 (813)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 222 (813)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=53.87 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=36.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 689 LLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 689 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+...+...|++++|+..++++++.+|++ +..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN--PEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666 666666666666666666666666666543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=54.18 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=55.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 655 CVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 655 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.++..+.+.|++++|++.++++ ...|+.+.+|..++.++...|++++|...++++++..|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3577889999999999999997 6668888899999999999999999999999999999986
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0002 Score=56.38 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHH
Q 046631 593 GMSERALSLFRSMKGCGIE-PDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAY 670 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 670 (813)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. . ...|+ ......++.++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4455555555555542210 1222333344445555555555555544 1 11222 223333344455555555555
Q ss_pred HHHH
Q 046631 671 EFVK 674 (813)
Q Consensus 671 ~~~~ 674 (813)
+.++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.5e-05 Score=45.83 Aligned_cols=31 Identities=32% Similarity=0.606 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHCCCcHHHHHHHHHHHHCCC
Q 046631 377 VSWNTMISAFVQNGLDDEGLMLVYEMQKQGF 407 (813)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 407 (813)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00088 Score=61.41 Aligned_cols=83 Identities=19% Similarity=0.113 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhCc-CC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELGE-EG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
...+..++..+...|++++|...+++... .+ ....+|..++..+...|++++|...++++++..|.+ +..+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ--PSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHH
Confidence 55677777888888888888888877631 12 223478888888889999999999999999998888 7888888
Q ss_pred HHHHHhcCC
Q 046631 726 SNIYAEEGN 734 (813)
Q Consensus 726 ~~~~~~~g~ 734 (813)
+.+|...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 888888776
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.002 Score=59.07 Aligned_cols=117 Identities=14% Similarity=0.134 Sum_probs=81.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD--AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYC 654 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 654 (813)
....+..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++..+ +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 455677777778888888888888888876433332 24666777777888888888888887774 3564 66666
Q ss_pred HHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 655 CVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 655 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.++.+|...|+...+..-++... ..+++|..++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~-------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE-------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH-------------------HHHHHHHHHHHHHHhhCchh
Confidence 77777777777666554333221 12577888999999988876
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00078 Score=61.53 Aligned_cols=95 Identities=17% Similarity=-0.039 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELG-EEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
...|..++..+...|++++|+..+++.. ..++ .+.+|..+...+...|++++|+..+++++.+.|.. ...+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL--PQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHHH
Confidence 6667778888888899999999888862 2222 33478899999999999999999999999999887 7778888
Q ss_pred HHHHH-------hcCCcHHHHHHHHHHH
Q 046631 726 SNIYA-------EEGNWENVDKVRKEMR 746 (813)
Q Consensus 726 ~~~~~-------~~g~~~~A~~~~~~m~ 746 (813)
+.+|. +.|++++|...+++..
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 88888 8888886666665543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.011 Score=51.75 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=115.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 668 (813)
.+.=+.+...+-..+-.+ .-|+...-..|..+....|+..+|...|++... |+-. |......+.++....+++.+
T Consensus 67 ~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 67 QQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHH
Confidence 333344444443333333 577777777888899999999999999998875 5554 58888888999999999999
Q ss_pred HHHHHHHhCcCC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 669 AYEFVKELGEEG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 669 A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
|...++++.+-+ ..++..-.+...+...|..+.|+..|+.++.--|+ +..-...+..+.++|+.++|..-+..+
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg---~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG---PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 999998873322 23345566778888999999999999999999888 567777888999999999888766555
Q ss_pred HH
Q 046631 746 RE 747 (813)
Q Consensus 746 ~~ 747 (813)
.+
T Consensus 220 ~d 221 (251)
T COG4700 220 VD 221 (251)
T ss_pred HH
Confidence 43
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00073 Score=66.36 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=89.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHH---HHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-------CcCCChHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDL---MQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-------GEEGNVLE 684 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~ 684 (813)
.|..|...|.-.|+++.|+...+. +.++||-.. ..+.+..+++++.-.|+++.|.+.|+.. ........
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666667888888876553 334455444 3678888999999999999999888763 22222233
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcC----CCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEM----DTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+-.+|.+.|.-..+++.|+.+..+-+.+ +...-....+-.|+++|...|..++|..+.++-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888888888887665433 21111145566788889999999988887766554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.003 Score=54.70 Aligned_cols=92 Identities=7% Similarity=-0.119 Sum_probs=54.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH 696 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 696 (813)
.+..-+...|++++|..+|+-+. -+.|. ..-|..|+-++...|++++|+..|... ...|+.+..+..+..++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 33334455666666666666555 33553 555556666666666666666666654 34455555566666666666
Q ss_pred CCHHHHHHHHHHHhcCC
Q 046631 697 GHSELAEVVAKKLLEMD 713 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~ 713 (813)
|+.+.|+..|+.++..-
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 66666666666666544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0019 Score=59.02 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 046631 579 SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD--AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCC 655 (813)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 655 (813)
...|..+...+...|++++|+..|++.......+. ..++..+...+...|+.++|+..++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34455555555566666666666666655322211 12455555555566666666666655552 2333 334444
Q ss_pred HHHHHh
Q 046631 656 VADMLG 661 (813)
Q Consensus 656 l~~~~~ 661 (813)
++.++.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.11 Score=51.34 Aligned_cols=145 Identities=17% Similarity=0.089 Sum_probs=101.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHH--HH
Q 046631 594 MSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVE--AY 670 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A~ 670 (813)
+...|...-.+..+ +.||.+ .-.....++.+.|++.++-.+++.+-+. .|.+... ....+.+.|+... ..
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia--~lY~~ar~gdta~dRlk 316 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIA--LLYVRARSGDTALDRLK 316 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHH--HHHHHhcCCCcHHHHHH
Confidence 34555555555555 667765 3334456788999999999999988754 6665554 3344567775322 22
Q ss_pred HHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhc-CCcHHHHHHHHHHHHC
Q 046631 671 EFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE-GNWENVDKVRKEMRER 748 (813)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 748 (813)
..-+--..+|+..++...+..+-...|++..|..-.+.+....|. .++|.+|+++-... |+-.++...+-+..+.
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr---es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR---ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch---hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 221111345666667777788888889999999999999999999 57889999987766 9999998888777654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0002 Score=53.65 Aligned_cols=50 Identities=20% Similarity=0.411 Sum_probs=32.8
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 695 LHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
..|++++|+..++++++.+|++ +.....++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666666666666666 6666666666666666666666666655
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=53.35 Aligned_cols=90 Identities=22% Similarity=0.195 Sum_probs=43.7
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCH
Q 046631 622 SACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHS 699 (813)
Q Consensus 622 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~ 699 (813)
..+...|++++|..+++.+.+. .|+ ...+..++.++...|++++|.+.++.. ...|....+|..+...+...|+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3344444455555544444422 222 234444455555555555555555443 22222223555555556666666
Q ss_pred HHHHHHHHHHhcCCC
Q 046631 700 ELAEVVAKKLLEMDT 714 (813)
Q Consensus 700 ~~a~~~~~~~~~~~p 714 (813)
+.|...++++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666655544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00017 Score=54.11 Aligned_cols=63 Identities=27% Similarity=0.329 Sum_probs=35.7
Q ss_pred ccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 046631 662 RVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLS 726 (813)
Q Consensus 662 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~ 726 (813)
..|++++|+++++++ ...|+...++..+..+|.+.|++++|..+++++...+|++ +.++.+++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN--PEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH--HHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH--HHHHHHHh
Confidence 455566666666554 3445444456666666666666666666666666666665 44444443
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0049 Score=66.61 Aligned_cols=136 Identities=15% Similarity=0.025 Sum_probs=73.0
Q ss_pred CCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhcc--------CcHHHHHHHHHHHHH
Q 046631 577 KNSVTYTTMILGYGQH-----GMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYA--------GLVDEGLQIFDLMQQ 642 (813)
Q Consensus 577 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~--------g~~~~a~~~~~~~~~ 642 (813)
.|..+|...+.+.... ++...|..+|++.++ ..|+.. .+..+..++... +++..+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4666777766664432 225678888888887 566653 333332222111 112233333333221
Q ss_pred hcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 643 EYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 643 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
. ...| +...|..+.-.....|++++|...++++ ..+|+ ...|..++..+...|+.++|...+++++.++|.+
T Consensus 413 l-~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 413 L-PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred c-ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 1 1122 3455665655555566666666666665 33343 3366666666666666666666666666666665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0032 Score=68.00 Aligned_cols=136 Identities=13% Similarity=0.104 Sum_probs=102.2
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc--------CCHHHHHHHHH
Q 046631 609 GIEPDAITFVAVLSACSY--A---GLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV--------GKVVEAYEFVK 674 (813)
Q Consensus 609 g~~p~~~~~~~ll~a~~~--~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 674 (813)
+...+...|..++++... . +....|..+|+++. ...|+ ...|..+..++... ++++.+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 356677888888887543 2 34779999999998 45897 66666665555332 22344555555
Q ss_pred Hh---CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 675 EL---GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 675 ~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
+. ...+..+.++..+.-.....|++++|...++++++++|. ...|..++.++...|+.++|.+.+++.....+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43 224444557888877777789999999999999999994 68999999999999999999999999987654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00034 Score=52.65 Aligned_cols=66 Identities=21% Similarity=0.165 Sum_probs=55.4
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC-CHHHHHHHHHHHhcCCC
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG-HSELAEVVAKKLLEMDT 714 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 714 (813)
++..|..++..+...|++++|+..|++. ...|+.+.+|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567888888888999999999888875 567777778999999999998 78999999999988877
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.015 Score=58.28 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=68.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHH
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYA-GLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADM 659 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~ 659 (813)
.+..|...|++..|-+++.++ ...|... |++++|++.|++..+.|...-. ...+..++.+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 345555666665555444443 3345555 6777777777766654322222 4456677788
Q ss_pred HhccCCHHHHHHHHHHhCcC----C----ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 660 LGRVGKVVEAYEFVKELGEE----G----NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+.+.|++++|.++|+++... + .....+...+-++...||...|...+++..+.+|.-
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 88888888888888876321 1 111223333445566788888888998888888764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.21 Score=50.32 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 046631 553 SLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDE 632 (813)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 632 (813)
..|.-+...|+...|.++-.+..-|+-.-|...+.+|+..++|++-..+... +-+++-|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3344455566666666666666666666666666666666666655554321 1123556666666666666666
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHH
Q 046631 633 GLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
|..++.++ + +..-+.+|.++|++.+|.+.--+
T Consensus 256 A~~yI~k~-------~----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKI-------P----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhC-------C----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 66655432 1 13345666666666666555433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0008 Score=51.25 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=48.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 690 LGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 690 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
...+.+.+++++|..++++++.++|++ +..+...+.+|.+.|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD--PELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc--chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 345677888888999999999888888 8888888888999999999999888888553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.014 Score=58.16 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA-CSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVAD 658 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 658 (813)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 468888888888888999999999998643 2334445555444 3346777779999999998743 35777888899
Q ss_pred HHhccCCHHHHHHHHHHhCcC-CC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 659 MLGRVGKVVEAYEFVKELGEE-GN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.+.+.|+.+.|..+|++.... +. ...+|...+..-.+.|+.+....+.+++.+..|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999997432 21 22389999999999999999999999999988885
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0033 Score=61.25 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=40.9
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHh----CcCCChHHHHHHHHHHHHHh
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKEL----GEEGNVLEIWGSLLGSCRLH 696 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~ 696 (813)
.+.|++++|...|+.+.+. .|+ ...+..++.+|...|++++|...|+.+ +..+..+++|..++..+...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 3445555555555555543 232 234444455555555555555444443 22223333444444444444
Q ss_pred CCHHHHHHHHHHHhcCCCC
Q 046631 697 GHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~p~ 715 (813)
|+.+.|..+++++++..|+
T Consensus 231 g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CCHHHHHHHHHHHHHHCcC
Confidence 5555555555555544444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0051 Score=59.96 Aligned_cols=98 Identities=8% Similarity=0.005 Sum_probs=55.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh-CcCC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC-CchhHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL-GEEG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS-MPGYHVLLS 726 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~~~l~ 726 (813)
.|...+..+.+.|++++|+..|+.+ ...| ..+.++..++..+...|++++|...|+++++..|++. .+..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666554 1222 2234566666666666666666666666666655531 133444456
Q ss_pred HHHHhcCCcHHHHHHHHHHHHCC
Q 046631 727 NIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 727 ~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.+|...|++++|.++++++.+.-
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 66666666666666666666543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.48 Score=50.66 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=21.0
Q ss_pred hHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 046631 279 FDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELF 317 (813)
Q Consensus 279 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 317 (813)
+++|.+..+.- |....|..+...-.+.-.++.|...|
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AF 715 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAF 715 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhh
Confidence 45555555443 33455666666666656666666665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.042 Score=51.82 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCCCCC---------------chhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 699 SELAEVVAKKLLEMDTRNSM---------------PGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..+|...++.++...|+... ...-..++..|.+.|++..|..-++.+.+.
T Consensus 106 ~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 106 TRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34556666666666666411 223344788899999999999999999853
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0084 Score=50.13 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=50.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhCcCC----ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-chhHHHHHHHHH
Q 046631 656 VADMLGRVGKVVEAYEFVKELGEEG----NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-PGYHVLLSNIYA 730 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~~~l~~~~~ 730 (813)
+..++-..|+.++|+.+|++....+ .....+-.+...++..|+.++|..++++.+...|++.. .....+++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3445555566666666666543222 11224555666666666666666666666666565100 444555566666
Q ss_pred hcCCcHHHHHHHHHH
Q 046631 731 EEGNWENVDKVRKEM 745 (813)
Q Consensus 731 ~~g~~~~A~~~~~~m 745 (813)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777776665443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.024 Score=49.79 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=94.3
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcC---CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 639 LMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEE---GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 639 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+..+.+.+.|++...-.|...+.+.|+..||...|++...- ++.. +.-.+..+....++...|...++++.+..|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-HHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 44455577899888999999999999999999999997433 3444 7778888889999999999999999999887
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 716 NSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 716 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
--.|....+++..|...|+.++|+..|+...+.-+
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 65577788999999999999999999999987643
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0048 Score=61.45 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCE
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGY 764 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 764 (813)
++..|..++.+.+++..|+....++++++|.| .-.+.--+.+|...|.++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNN--VKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 77888899999999999999999999999999 888889999999999999999999999843
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 046631 765 VNRFASKDQEHPQSHKIYEMLERLAMEMRN 794 (813)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 794 (813)
.|.+.++...|..+..++++
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHHH
Confidence 46666777777666655544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0074 Score=48.34 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=52.8
Q ss_pred HHHHhccCCChHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHH
Q 046631 519 VLPACNPMGNIELGKQLHGFSIRYLL-DQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSER 597 (813)
Q Consensus 519 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 597 (813)
.|..|...+++...-.+++.+++.|+ -|++.+|+.++...++..--. ..-.++..+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~-----------------------~~ie~kl~~ 87 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS-----------------------EDIENKLTN 87 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc-----------------------hhHHHHHHH
Confidence 34444444555555556666666666 556666666655544332110 011224567
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 046631 598 ALSLFRSMKGCGIEPDAITFVAVLSACSY 626 (813)
Q Consensus 598 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 626 (813)
.+.+|+.|+..+++|+..||+.++..+.+
T Consensus 88 LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 88 LLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 78888999999999999999999987654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.25 Score=49.50 Aligned_cols=88 Identities=15% Similarity=-0.007 Sum_probs=64.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHh
Q 046631 586 ILGYGQHGMSERALSLFRSMKGC---GIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLG 661 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 661 (813)
.+-..+.|++..|.+.|.+.+.. ++.|+...|........+.|+..+|+.--++.. .+.|. +..|..-..++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHH
Confidence 34456778888888888888763 234444567777777788888888888777766 55665 666666677777
Q ss_pred ccCCHHHHHHHHHHh
Q 046631 662 RVGKVVEAYEFVKEL 676 (813)
Q Consensus 662 ~~g~~~~A~~~~~~~ 676 (813)
..+.|++|.+-+++.
T Consensus 333 ~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888888775
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0069 Score=62.60 Aligned_cols=120 Identities=7% Similarity=-0.014 Sum_probs=75.4
Q ss_pred CCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCHh
Q 046631 507 HNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY--LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE----KNSV 580 (813)
Q Consensus 507 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~ 580 (813)
.+...+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++.++++.=.. ||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445667777778888888887888877777766655 2222233445666666666666666666654332 5666
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY 626 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 626 (813)
++|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666666665555555555555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.7 Score=50.15 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGL 629 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~ 629 (813)
+.+--+.-+...|+..+|.++-.+..-||-..|.--+.+++..++|++-+++-+.+.. +.-|.....+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhccc
Confidence 3444555667789999999999999989999999999999999999988777665432 4557778889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHH
Q 046631 630 VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 630 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
.++|.+++-+.. | +.-.+.+|.+.|++.+|.++--+
T Consensus 760 ~~EA~KYiprv~---~-------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 760 KDEAKKYIPRVG---G-------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhhhhhccC---C-------hHHHHHHHHHhccHHHHHHHHHH
Confidence 999999885442 1 11578889999999998877554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.055 Score=55.68 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=112.8
Q ss_pred hHH--HHHHHHHHhcC-----ChHHHHHHHHHHHh-CCCCCCHH-HHHHHHHHHh---------ccCcHHHHHHHHHHHH
Q 046631 580 VTY--TTMILGYGQHG-----MSERALSLFRSMKG-CGIEPDAI-TFVAVLSACS---------YAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 580 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~~-~~~~ll~a~~---------~~g~~~~a~~~~~~~~ 641 (813)
..| ..++.+..... ..+.|+.+|.+... +.+.|+-. .|..+..++. ......+|.++.++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 55666554422 34678889999882 22667654 3333333221 1234556777777666
Q ss_pred HhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc
Q 046631 642 QEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP 719 (813)
Q Consensus 642 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 719 (813)
.+.| |+.....++.++.-.|+++.|..+|++. ..+|+...+|....+.+...|+.++|.+.++++++++|.- .
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~--~ 406 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR--R 406 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh--h
Confidence 5567 5888999999999999999999999997 6788888899999999999999999999999999999987 5
Q ss_pred hhHHHHHHH-HHhcCCcHHHHHHHH
Q 046631 720 GYHVLLSNI-YAEEGNWENVDKVRK 743 (813)
Q Consensus 720 ~~~~~l~~~-~~~~g~~~~A~~~~~ 743 (813)
..-++-.++ ..-....++|.+++-
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 407 KAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHHcCCchhhhHHHHh
Confidence 544444444 333455677777664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.56 Score=50.18 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=59.9
Q ss_pred CCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHh-CCCCC------CcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcc
Q 046631 223 RPSTISFVNVFPALSSLGDYKSADVVYGLLVKL-GSEYV------NDLFVASSAIFMYAELGCFDFARKIFDNCLERNTE 295 (813)
Q Consensus 223 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 295 (813)
.|.+..|..+.......-.++.|...|-..... |+.+. .......+=+. +--|++++|++++-.+..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 466666666666555555555555554333211 11100 01111111122 224889999999988877764
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCC----hhhHHHHHHHhcccCcchHHHHHH
Q 046631 296 VWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFD----DVTFLSALSAVSQLQELDLGQQLH 353 (813)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 353 (813)
.|..+.+.|++-.+.+++ + ..|-..| ...++.+-+.++....++.|.+.+
T Consensus 766 ----Aielr~klgDwfrV~qL~-r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLI-R---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHH-H---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777666 2 1221111 123444444555555555554443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0027 Score=48.26 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=52.5
Q ss_pred HHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHH
Q 046631 657 ADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHV 723 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~ 723 (813)
..+|.+.+++++|.+.++.+ ...|+.+..|...+.++...|++++|...++++++..|++ +....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~--~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD--PDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc--HHHHH
Confidence 35678888888888888887 4567777688888889999999999999999999999987 55443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0034 Score=64.07 Aligned_cols=63 Identities=14% Similarity=-0.001 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHH---HHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLE---IWGSLLGSCRLHGHSELAEVVAKKLLEM 712 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 712 (813)
...++.++.+|.+.|++++|+..+++. ..+|+... +|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555666666666666666665552 44444332 3555666666666666666666666554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.029 Score=56.10 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=98.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC---CCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCC--hhHHHH
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCGI---EPDA--ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKI--QPS--TEHYCC 655 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~ 655 (813)
....|...|++++|.+.|.+..+... .+.. ..|......| +.+++++|...+++....+.- .|+ ...+..
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45555666666666666655433211 1111 1333333333 334777777777766554211 222 556777
Q ss_pred HHHHHhcc-CCHHHHHHHHHHh----CcCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc-----hhH
Q 046631 656 VADMLGRV-GKVVEAYEFVKEL----GEEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP-----GYH 722 (813)
Q Consensus 656 l~~~~~~~-g~~~~A~~~~~~~----~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~ 722 (813)
++.+|... |++++|++.|++. ...+. ....+..+...+.+.|++++|..++++......++... .++
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 88889888 9999999999886 22222 22367788899999999999999999987654332111 233
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
...+-++...|+...|.+.+++..+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33455677889999999999988754
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.018 Score=59.55 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=88.5
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEH--NVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSL 554 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 554 (813)
+......++.......+.+.+..++.+.+.. ....-..|..++++.|.+.|..+.+..++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5566777777777778888888888888765 22233445668999999999999999999988889999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC----CCHhHHHHHHHHHHhc
Q 046631 555 IDMYSKSGVINYAANVFAKIPE----KNSVTYTTMILGYGQH 592 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 592 (813)
++.+.+.|++..|.++...|.. .+..++.-.+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999998887762 2445555445554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.025 Score=47.31 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=62.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCGIEPDA--ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLG 661 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 661 (813)
+..++-..|+.++|+.+|++....|..... ..+..+.+.+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455667788888888888888887766543 3566677788888888888888888876531111 1233334556777
Q ss_pred ccCCHHHHHHHHHH
Q 046631 662 RVGKVVEAYEFVKE 675 (813)
Q Consensus 662 ~~g~~~~A~~~~~~ 675 (813)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.32 Score=47.17 Aligned_cols=175 Identities=11% Similarity=0.019 Sum_probs=97.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CCH-h---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-
Q 046631 554 LIDMYSKSGVINYAANVFAKIPE--KNS-V---TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY- 626 (813)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~- 626 (813)
....+.+.|++++|.+.|+++.. |+. . +.-.++.+|.+.+++++|...+++.++....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445566777777777776652 221 1 1233455666677777777777777664322222333333333322
Q ss_pred -cC---------------c---HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHH
Q 046631 627 -AG---------------L---VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWG 687 (813)
Q Consensus 627 -~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 687 (813)
.+ + ..+|+..|+. +++-|=...-..+|...+..+... ...--.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~~A~~rl~~l~~~--la~~e~ 179 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTTDATKRLVFLKDR--LAKYEL 179 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHHHHHHHHHHHHHH--HHHHHH
Confidence 11 0 0122222333 333333333344444433333111 000111
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCC-CchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRNS-MPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
.+...|.+.|++.-|..-++.+++.-|+.. .......+..+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 455668888999999999999999888751 13456678899999999999999877654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.058 Score=52.24 Aligned_cols=56 Identities=20% Similarity=0.073 Sum_probs=35.9
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCCChhh----HHHHHHHHHhCCChHHHHHHHHHHHHC
Q 046631 452 IDMYAKSGLIKTARQIFEKNDSGDRDQAT----WNAMIAGYTQNGLLEEAFVAFRQMLEH 507 (813)
Q Consensus 452 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~m~~~ 507 (813)
...+.+.|++++|.+.|+.+....|+... .-.++.+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33445567777777777776655553321 133456677778888888888777764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.033 Score=44.76 Aligned_cols=81 Identities=21% Similarity=0.233 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHhcCCCCChh
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGI-EPDAITFVAVLSACSYAG--------LVDEGLQIFDLMQQEYKIQPSTE 651 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 651 (813)
+-...|..+...+++.....+|+.+...|+ -|+..+|+.++.+.++.. ++-+.+.+++.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344567777777999999999999999999 999999999999876543 345678899999988 9999999
Q ss_pred HHHHHHHHHhc
Q 046631 652 HYCCVADMLGR 662 (813)
Q Consensus 652 ~~~~l~~~~~~ 662 (813)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.27 Score=52.00 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=26.0
Q ss_pred HHHHHHHHHHCCCc--HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHH
Q 046631 379 WNTMISAFVQNGLD--DEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQT 433 (813)
Q Consensus 379 ~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 433 (813)
++..=.+|.+-.+. -+.+.-+++|+++|-.|+...... .|+-.|.+.+|.++
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~---~~Ay~gKF~EAAkl 654 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLAD---VFAYQGKFHEAAKL 654 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHH---HHHhhhhHHHHHHH
Confidence 44444555444433 344455666777776676654322 23334444444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0018 Score=50.11 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=11.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
+|+.++.+|.+.|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444455555555555544444
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.099 Score=48.82 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcC-----CCCchhHHHHH
Q 046631 480 TWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYL-----LDQNVFVGTSL 554 (813)
Q Consensus 480 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l 554 (813)
..+.++..+.-.|.+.-.+.++++.++...+.++.....+.+.-.+.|+.+.|...++...+.. +....-+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4466777777888888899999999987766777888888888889999999999999777653 33333333334
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAIT 616 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 616 (813)
...|.-++++..|...|.++.. .|+..-|.-.-+..-.|+..+|++.++.|.. ..|...+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccch
Confidence 4456677788888888887763 3566666666666667888888888888887 4454443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.032 Score=55.56 Aligned_cols=130 Identities=14% Similarity=0.066 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 046631 377 VSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSA-ASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMY 455 (813)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (813)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++.-.....++...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 468888888888888999999999998553 2223333333222 33457777899999999987555557778888999
Q ss_pred HhcCCHHHHHHHHhhcCCCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 046631 456 AKSGLIKTARQIFEKNDSGDRDQ----ATWNAMIAGYTQNGLLEEAFVAFRQMLEH 507 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 507 (813)
.+.|+.+.|..+|++....-+.. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999866544433 37888888888889999998888888774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0011 Score=40.94 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=29.7
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHH
Q 046631 706 AKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVD 739 (813)
Q Consensus 706 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 739 (813)
++++++++|++ +..|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n--~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNN--AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCC--HHHHHHHHHHHHHCcCHHhhc
Confidence 67899999999 999999999999999999986
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.018 Score=56.96 Aligned_cols=258 Identities=12% Similarity=0.053 Sum_probs=155.5
Q ss_pred HHHHCCCcHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHhcCCChHHHHHHHHHHH--Hh--CCCCc--chHHHHHHHH
Q 046631 385 AFVQNGLDDEGLMLVYEMQKQGF---MIDSVTVTALLSAASNLRNQDVGKQTHAYLL--RH--GIHFE--GMESYLIDMY 455 (813)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~~g~---~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~~~~--~~~~~l~~~~ 455 (813)
-+++.|+....+.+|+...+.|- ..=+..|..|.++|.-.+++++|.+++..=+ .. |-..- .....|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 36899999999999999998873 2223457777788888899999998875422 11 11111 2333456666
Q ss_pred HhcCCHHHHHHHHhhcCCC-----C--CChhhHHHHHHHHHhCCC--------------------hHHHHHHHHHHHH--
Q 046631 456 AKSGLIKTARQIFEKNDSG-----D--RDQATWNAMIAGYTQNGL--------------------LEEAFVAFRQMLE-- 506 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~-- 506 (813)
--.|.+++|.-...+-... + .....+-.+...|...|+ ++.|.+.|.+=.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6677787776554431110 1 122344445666655443 2334444443221
Q ss_pred --CCCC-CCHHHHHHHHHHhccCCChHHHHHHHHHHHH----cCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 046631 507 --HNVT-PNVVTIASVLPACNPMGNIELGKQLHGFSIR----YLL-DQNVFVGTSLIDMYSKSGVINYAANVFAKIP--- 575 (813)
Q Consensus 507 --~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 575 (813)
.|-. .--..|..+-+.|.-.|+++.|...|+.-.. .|- ......+..+..++.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1111 0112455555666667888888888775332 232 1234566777788888888888888877543
Q ss_pred ----CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046631 576 ----EK--NSVTYTTMILGYGQHGMSERALSLFRSMKGC----G-IEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQ 642 (813)
Q Consensus 576 ----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 642 (813)
.+ ...+..+|.+.|.-..++++|+.++.+-..- + .--....+.+|..++...|..++|+.+.+...+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 2345667777887778888888877654321 1 111234677788888888888888777655443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.98 Score=46.11 Aligned_cols=117 Identities=21% Similarity=0.189 Sum_probs=76.1
Q ss_pred HhcCC-HHHHHHHHhhCC---CCCHhHHHHHHH----HHHh---cCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHH
Q 046631 559 SKSGV-INYAANVFAKIP---EKNSVTYTTMIL----GYGQ---HGMSERALSLFRSMKGCGIEPDAI----TFVAVLSA 623 (813)
Q Consensus 559 ~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~a 623 (813)
-+.|. -++|.++++.+. ..|...-|.... .|.+ .....+-+.+-+-..+.|+.|-.+ .-+.|.+|
T Consensus 390 W~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 34444 677777777665 235444433321 2221 233455555555566678777443 34445544
Q ss_pred --HhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCc
Q 046631 624 --CSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGE 678 (813)
Q Consensus 624 --~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 678 (813)
+...|++.++.-+-.-+. .+.|++.+|..++-++....++++|.+++.+++.
T Consensus 470 EyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 456788888876654444 6789999999999999999999999999999875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.17 Score=47.34 Aligned_cols=136 Identities=11% Similarity=-0.037 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC----CCCChhHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK----IQPSTEHYCCV 656 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l 656 (813)
..+.++..+.-.|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|++..+..+ +.-...+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566677777788888888899988876666777777888888889999999999987765522 22223333344
Q ss_pred HHHHhccCCHHHHHHHHHHhCcC-CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 657 ADMLGRVGKVVEAYEFVKELGEE-GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
...|.-++++.+|...+.++... +..+...|+-.-+..-.|+...|.+..+.+.+..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 45566677788888888776443 3333234444444445577888888888888888876
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.002 Score=49.80 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC----CCCC-CCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 680 GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM----DTRN-SMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 680 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
|+...+++.+...+...|++++|+..+++++++ +++. .....+..++.+|...|++++|.+++++..+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344558999999999999999999999999865 2221 1245677899999999999999999998764
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.026 Score=51.49 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=77.6
Q ss_pred HHHHhhcCCCCCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC-------------
Q 046631 465 RQIFEKNDSGDRDQATWNAMIAGYTQN-----GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPM------------- 526 (813)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------------- 526 (813)
...|+.......+-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 455666544467778888888888654 56666777888899999999999999999987542
Q ss_pred ---CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046631 527 ---GNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGV 563 (813)
Q Consensus 527 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 563 (813)
.+-+-|..++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788899999999999999999999998877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.025 Score=51.61 Aligned_cols=96 Identities=18% Similarity=0.340 Sum_probs=75.2
Q ss_pred HHHhhC--CCCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------------
Q 046631 569 NVFAKI--PEKNSVTYTTMILGYGQ-----HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYA-------------- 627 (813)
Q Consensus 569 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~-------------- 627 (813)
..|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 35567777777777764 467777888888999999999999999999876442
Q ss_pred --CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC
Q 046631 628 --GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGK 665 (813)
Q Consensus 628 --g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 665 (813)
.+.+-|++++++|... |+-||.+++..+++++++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2346789999999887 999999999999999988775
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0043 Score=41.31 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 046631 684 EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSN 727 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~ 727 (813)
.+|..+...+...|++++|+++++++++.+|++ +..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~--~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD--PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC--HHHHHHhhh
Confidence 378888999999999999999999999999998 777766653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.38 Score=48.98 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=94.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-------CHhHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046631 553 SLIDMYSKSGVINYAANVFAKIPEK-------NSVTYTTMILGYGQ---HGMSERALSLFRSMKGCGIEPDAITFVAVLS 622 (813)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 622 (813)
.++-.|-...+++...++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3334466666666666666666532 11222233444555 6777888888777655555677777776666
Q ss_pred HHh----c-----cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHH----HHHHHH---HH-hCcCC---Ch
Q 046631 623 ACS----Y-----AGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVV----EAYEFV---KE-LGEEG---NV 682 (813)
Q Consensus 623 a~~----~-----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~~~~~---~~ 682 (813)
.|- . ....++|+..|.+.- .+.|+..+-..++.++...|.-. +..++. .. +...+ ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 542 1 123667777776554 55677555445555555555322 222222 11 11111 22
Q ss_pred HHHH--HHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 683 LEIW--GSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 683 ~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.+.| .+++.++.-.||.++|.+.+++++.+.|..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2244 578888899999999999999999998765
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.32 Score=45.82 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-chhHHHHHHHHHhcCCcHHHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-PGYHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~ 740 (813)
.++..|.+.|.+..|..-++.+++.-|+... ......++..|.+.|..+.|..
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 3567788899999999999999999988511 1234667888989888874443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.035 Score=45.57 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=77.7
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC--chhHHHHHHHHHhc
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM--PGYHVLLSNIYAEE 732 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~~~l~~~~~~~ 732 (813)
-+-++...|+++.|++.|.+. ..-|..+.+||.-..+++-+|+.++|+.-+++++++.-+... ...|+.-+-+|...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 345678899999999999875 455666668999999999999999999999999987543211 23466778899999
Q ss_pred CCcHHHHHHHHHHHHCCCc
Q 046631 733 GNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 733 g~~~~A~~~~~~m~~~~~~ 751 (813)
|+-++|..-|+...+.|.+
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 9999999999999988753
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.41 E-value=1.4 Score=45.13 Aligned_cols=42 Identities=10% Similarity=0.034 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCC----CCCCHhhHHHHHHHh
Q 046631 195 NTIVSWYVKTERYVEAVRQFRMMLRMG----IRPSTISFVNVFPAL 236 (813)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~~~ 236 (813)
+..+..+...|++.++..++++|...= ..-+..+|+.++-.+
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlml 177 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLML 177 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence 445666778888888888888876542 235777777754444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=1.2 Score=44.45 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=74.7
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhccCcHH
Q 046631 556 DMYSKSGVINYAANVFAKIPE--KNSVTYTTMILGYGQHGMSERALSLFRSMKGC-GIEPDA-ITFVAVLSACSYAGLVD 631 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~~~~~ll~a~~~~g~~~ 631 (813)
.++.+.|++.++-.+++.+-+ |.+..+... .+.+.| +.++.-+++..+. .++||. .+...+..+-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 456667777777777766653 333333221 222333 3333333333221 145544 45666677777788888
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhc-cCCHHHHHHHHHHhCcCCChHHHHHH
Q 046631 632 EGLQIFDLMQQEYKIQPSTEHYCCVADMLGR-VGKVVEAYEFVKELGEEGNVLEIWGS 688 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~ 688 (813)
.|..--+... ...|....|..|.++-.. .|+-.++..++-+....|..+ .|..
T Consensus 347 ~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP-aW~a 400 (531)
T COG3898 347 AARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP-AWTA 400 (531)
T ss_pred HHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC-cccc
Confidence 7777665555 457888888888887754 488888888888876666555 5543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.068 Score=55.01 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=95.3
Q ss_pred cHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhc---------cCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC
Q 046631 629 LVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGR---------VGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 629 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 697 (813)
..+.|..+|.+......++|+ ...|..+..++.. .....+|.++.++. ...++.+.+...++.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467788899988855467887 7777777666542 22455666776665 555666657777777778888
Q ss_pred CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCc
Q 046631 698 HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 751 (813)
+.+.|...|+++..++|+. +..+...+++..-.|+.++|.+.+++..+..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~--A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI--ASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred chhhHHHHHHHHhhcCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 8999999999999999999 999999999999999999999999997765543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.22 Score=48.20 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccC---CHHHHHHHHHHh-CcCCChHHH
Q 046631 611 EPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVG---KVVEAYEFVKEL-GEEGNVLEI 685 (813)
Q Consensus 611 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~~~~~~ 685 (813)
+-|...|..|..+|...|+.+.|..-|.... .+.|+ +..+..+..++..+. ...++.++++++ ..+|..+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3345567777777777777777777777666 33443 555566665554332 345666777765 455555556
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
...|...+...|++.+|...++.+++..|.+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6777777777777777777777777777765
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.14 Score=43.76 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=31.1
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
..+.|++++|.+.|+.+..++-..| ...+...|+++|.+.|++++|...+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3456666666666666665543333 2445555666666666666666655553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.12 Score=44.22 Aligned_cols=99 Identities=12% Similarity=0.005 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhC----cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-chhHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELG----EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-PGYHVL 724 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~~~ 724 (813)
...+-.-+....+.|++++|.+.|+.+. ..+....+--.|+.++.+.+++++|...+++.+++.|.+.. +-.+..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3344445566678999999999999983 33344447778999999999999999999999999998621 223445
Q ss_pred HHHHHHhcCC---------------cHHHHHHHHHHHHC
Q 046631 725 LSNIYAEEGN---------------WENVDKVRKEMRER 748 (813)
Q Consensus 725 l~~~~~~~g~---------------~~~A~~~~~~m~~~ 748 (813)
.|-++..... ..+|...|+.+.+.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 5555665554 55666667666643
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.77 Score=43.50 Aligned_cols=139 Identities=17% Similarity=0.169 Sum_probs=70.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGI--EPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRV 663 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 663 (813)
+..-.+.|++++|.+.|+.+..... +-...+...++-++-+.+++++|+..+++..+.++-.|++. |...+.++..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~- 118 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSY- 118 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHH-
Confidence 3344455666666666666665421 11223444555556666666666666666665554444421 2222222220
Q ss_pred CCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC---------------CchhHHHHHHH
Q 046631 664 GKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS---------------MPGYHVLLSNI 728 (813)
Q Consensus 664 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---------------~~~~~~~l~~~ 728 (813)
+..+..... ...-...|..-++.++..-|+.. .+.+-..+++.
T Consensus 119 ---------~~~i~~~~r-------------Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 119 ---------FFQIDDVTR-------------DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred ---------hccCCcccc-------------CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 00001233334444444444420 13445568889
Q ss_pred HHhcCCcHHHHHHHHHHHHC
Q 046631 729 YAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 729 ~~~~g~~~~A~~~~~~m~~~ 748 (813)
|.+.|.|..|..-+++|.+.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc
Confidence 99999999999999999964
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.24 Score=52.39 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCCChhh-HH----------HHHHHHHhCCChHHHHHHHHHHH
Q 046631 450 YLIDMYAKSGLIKTARQIFEKNDSGDRDQAT-WN----------AMIAGYTQNGLLEEAFVAFRQML 505 (813)
Q Consensus 450 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~----------~li~~~~~~~~~~~A~~~~~~m~ 505 (813)
.++++....+++++|..+-++.++..+++.. |. .--.+|.+.|+-.+|..+++++.
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 3777788888888888888877765555432 11 11234445555555555555543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.05 Score=55.85 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-h---hHHHHHHHHHhccCCHHHHHHHHHHhCc
Q 046631 613 DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-T---EHYCCVADMLGRVGKVVEAYEFVKELGE 678 (813)
Q Consensus 613 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 678 (813)
+...++.+..+|.+.|++++|+..|++.+ .+.|+ . .+|..++.+|...|++++|++.+++...
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34578888888888888888888888887 45776 3 3488888888888888888888888744
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.082 Score=50.31 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh----CcCCChHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL----GEEGNVLEIWGSLL 690 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~ 690 (813)
.|+.-+.. .+.|++.+|...|...++.|--.+ ....+-.|+.++...|++++|...|..+ +..|..++.+..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45544443 456678888888877776531111 1555666788888888888887776655 55566667777777
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 691 GSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.+....|+.++|...++++++.-|+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 78888888888888888888887775
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.09 Score=52.74 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
..++..+.-+|.+.+++.+|++.-++. ..+|++.-....-+.+|...|+++.|+..|+++++++|.| ..+..-|..+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N--ka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN--KAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc--HHHHHHHHHH
Confidence 446778889999999999999988876 4555555477778899999999999999999999999999 7777777766
Q ss_pred HHhcCCcHHH-HHHHHHHHHC
Q 046631 729 YAEEGNWENV-DKVRKEMRER 748 (813)
Q Consensus 729 ~~~~g~~~~A-~~~~~~m~~~ 748 (813)
-.+..+.++. .++|..|-..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 6666555544 6788888754
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.15 Score=45.12 Aligned_cols=107 Identities=20% Similarity=0.174 Sum_probs=72.5
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHH
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQP--STEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (813)
....|+.+.+...+.++...+.-.+ +... ..-.......++..- ..+...++..+...|++++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-----~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-----LDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-----HHHHHHHHHHHHHTT-HHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-----HHHHHHHHHHHHhccCHHH
Confidence 3456777788887777775542221 1111 112222333333331 2267778888889999999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
|...+++++..+|-+ -..+..+..+|...|+..+|.+.|+++..
T Consensus 81 a~~~~~~~l~~dP~~--E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 81 ALRLLQRALALDPYD--EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999 88999999999999999999999998854
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.56 Score=50.54 Aligned_cols=159 Identities=15% Similarity=0.105 Sum_probs=95.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCChhH-H
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCG-IEPDA-----ITFVAVLSACSY----AGLVDEGLQIFDLMQQEYKIQPSTEH-Y 653 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~-~ 653 (813)
++....-.|+-+.+++++.+..+.+ +.-.. ..|..++..++. ..+.+.|.++++.+.+. -|+... .
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHH
Confidence 3444444555566666555544421 11111 123333333322 44677788888888755 476333 3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhCc-CC-----ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 046631 654 CCVADMLGRVGKVVEAYEFVKELGE-EG-----NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSN 727 (813)
Q Consensus 654 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~ 727 (813)
..-+..+...|++++|++.+++... +. ... .+.-+.+.+....++++|...+.++.+.+.-. ...++...+-
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l-~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-ka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL-CYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-KAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH-HHHHHHHHHHHHchHHHHHHHHHHHHhccccH-HHHHHHHHHH
Confidence 4555667778888888888886532 11 111 45566777778888888888888888754432 2445556677
Q ss_pred HHHhcCCc-------HHHHHHHHHHHHC
Q 046631 728 IYAEEGNW-------ENVDKVRKEMRER 748 (813)
Q Consensus 728 ~~~~~g~~-------~~A~~~~~~m~~~ 748 (813)
+|...|+. ++|.+++++....
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 77788888 7788887777543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.088 Score=50.14 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=78.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh----CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-chhHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL----GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-PGYHVLLS 726 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~~~l~ 726 (813)
.|+.-++. .+.|++.+|...|... +.....++.+..|+.++...|+++.|..+|..+..-.|+..- |..+.-|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655554 4677799999888775 444556678889999999999999999999999987776521 56788899
Q ss_pred HHHHhcCCcHHHHHHHHHHHHC
Q 046631 727 NIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 727 ~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999999864
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.66 Score=38.59 Aligned_cols=140 Identities=17% Similarity=0.223 Sum_probs=78.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEA 669 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 669 (813)
.-.|..++..++..+.... .+..-++-+|--....-+-+-..+.++.+-+-|.+.| -.....++.+|.+.|...+
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcchHH-
Confidence 4467777888888777653 2222333333222223333444555555543333322 1112234444444443222
Q ss_pred HHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 670 YEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
..+.-+..+..+|+-+.-.+++..+...+..+ |.+..-++.+|.+.|+..++.+++.++=++|
T Consensus 88 ---------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~--p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 ---------------YVDLALDILVKQGKKDQLDKIYNELKKNEEIN--PEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCC--HHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44555677788899899999999888654444 8899999999999999999999999999888
Q ss_pred Cc
Q 046631 750 LR 751 (813)
Q Consensus 750 ~~ 751 (813)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 74
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.6 Score=43.23 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=62.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHh---cCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh----CcCCChH---HHHHH
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQE---YKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL----GEEGNVL---EIWGS 688 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~---~~~~~ 688 (813)
+.-++...|.+..|.+.-++..+- .|-.|. .....++.++|...|+.|.|+.-|++. ..-++.. .+...
T Consensus 212 maValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g 291 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDG 291 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 334566666666666665554332 133332 556667888888888888877766653 2222211 12222
Q ss_pred HHHHHHH---hCC--HHHHHHHHHHHhc----CCCCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 046631 689 LLGSCRL---HGH--SELAEVVAKKLLE----MDTRNSMPGYHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 689 l~~~~~~---~g~--~~~a~~~~~~~~~----~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
...+... +.. .=.|+++-+++++ ++.+...-..+-.++.+|...|.-++-..-+.
T Consensus 292 ~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ 355 (518)
T KOG1941|consen 292 AAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVV 355 (518)
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 2222111 111 1124444444433 33333223445567888877776665444333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.95 Score=43.73 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=13.9
Q ss_pred cCCCCCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 046631 711 EMDTRNSMPGYHVLLSNIYAEEGNWENVDKVR 742 (813)
Q Consensus 711 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 742 (813)
..+|++ ...-..++..|...|+.++|.+.+
T Consensus 230 aadPdd--~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 230 AADPDD--VEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred HhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334444 444444444444445554444433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=2.3 Score=41.04 Aligned_cols=195 Identities=20% Similarity=0.144 Sum_probs=133.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIP-----EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLS 622 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 622 (813)
...+......+...+.+..+...+.... ......+..+...+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455566666777777777777766543 23455666667777777778888888888877433331 22222222
Q ss_pred -HHhccCcHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhccCCHHHHHHHHHHhCc-CCC-hHHHHHHHHHHHHH
Q 046631 623 -ACSYAGLVDEGLQIFDLMQQEYKIQP----STEHYCCVADMLGRVGKVVEAYEFVKELGE-EGN-VLEIWGSLLGSCRL 695 (813)
Q Consensus 623 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~l~~~~~~ 695 (813)
.+...|+++.+...+.+... ..| ....+......+...++.++|...+.+... .+. ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888888888888753 233 244444555556778888888888887633 333 24477888888888
Q ss_pred hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 696 HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 696 ~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.++.+.+...+..++...|.. ......++..+...|.++++...+.+..+.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDN--AEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCccc--HHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999998888874 556666777777777788888888877754
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.17 Score=42.84 Aligned_cols=97 Identities=14% Similarity=0.226 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYA 627 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 627 (813)
..++.++|.++++.|+++....+++..-..|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345666666777777766666666544321110 0000000 111234678888888888888888
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 046631 628 GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADML 660 (813)
Q Consensus 628 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 660 (813)
|++..|.++++...+.|++.-+...|..|+.-.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888888888888888888766677776666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.54 E-value=3.1 Score=42.04 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=64.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChH
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIE 530 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 530 (813)
.+.-+...|+...|.++-.+.. -|+...|-..+.+|+..++|++...+-.. +-.+..|-.++.+|.+.|...
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk--v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK--VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC--CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 3445556677777777777666 56777777777777777777666554321 112355666777777777766
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046631 531 LGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVF 571 (813)
Q Consensus 531 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (813)
+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 255 eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 255 EASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 666665541 1345566677777776665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.46 E-value=4.3 Score=45.05 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=27.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHH
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFV 499 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 499 (813)
++..+.+..+.+.+..+.+... +-+...|-.++..+++.+..+...+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g--~~~p~l~~~~L~yF~~~~~i~~~~~ 757 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG--KEDPSLWLHALKYFVSEESIEDCYE 757 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC--ccChHHHHHHHHHHhhhcchhhHHH
Confidence 4555556666666666666655 3355566666666666665444333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.35 Score=47.49 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=53.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCC--CC--ChhHHHHHHHHHhccCCHHHHHHHHHHh-------CcCCChH----HH
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKI--QP--STEHYCCVADMLGRVGKVVEAYEFVKEL-------GEEGNVL----EI 685 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~----~~ 685 (813)
..|....+.++++++.|+...+.-.- +| ...++..|...|.+..++++|.-+..+. ...+... .+
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 33444444555555555554432110 11 1345555556666655555555443332 1111110 02
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcC----CCCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEM----DTRNSMPGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
..-+.-+++..|....|.+..+++.++ +.....+.....++++|...|+.|.|..-|+.
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 233344555555555555554444322 11111122333455666666655555544443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.19 Score=42.57 Aligned_cols=94 Identities=14% Similarity=0.004 Sum_probs=60.8
Q ss_pred hhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchh---hhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHC
Q 046631 330 DVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPV---IVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQ 405 (813)
Q Consensus 330 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (813)
..++..++.++++.|+++....+....-. ....... ...+.-..|+..+..+++.+|+.+|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44555666666666666655555544332 1111100 1122235688888999999999999999999999987654
Q ss_pred -CCCCCHhHHHHHHHHHhc
Q 046631 406 -GFMIDSVTVTALLSAASN 423 (813)
Q Consensus 406 -g~~pd~~t~~~ll~~~~~ 423 (813)
+++.+..+|..|+.-+..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 677778888888876543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.2 Score=44.25 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hcCCCCChhH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQ----EYKIQPSTEH 652 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 652 (813)
+...++..+...|++++|+.+.+++.... +-|...|..++.++...|+..+|.+.|+.+.+ ++|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445556666677777777777776632 33455677777777777777777776665532 3477776544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.19 Score=44.90 Aligned_cols=92 Identities=14% Similarity=0.012 Sum_probs=71.2
Q ss_pred HHHHhccCCHHHHHHHHHHhC-cCCCh-----HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 657 ADMLGRVGKVVEAYEFVKELG-EEGNV-----LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
++-+.+.|++++|..-|.... .-|.. .-.|..-..++.+.+.++.|+.-..++++++|.. -.+..--+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty--~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY--EKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh--HHHHHHHHHHHH
Confidence 455667888888887776651 11211 1156666778888999999999999999999987 667777788999
Q ss_pred hcCCcHHHHHHHHHHHHCCC
Q 046631 731 EEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 731 ~~g~~~~A~~~~~~m~~~~~ 750 (813)
+..++++|++-|+++.+..+
T Consensus 180 k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 99999999999999997643
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.11 E-value=6.7 Score=43.29 Aligned_cols=27 Identities=7% Similarity=0.206 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 046631 378 SWNTMISAFVQNGLDDEGLMLVYEMQK 404 (813)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (813)
.-..|+..|...++++.|+.++-..++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccC
Confidence 344588888999999999988877653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.97 E-value=7.7 Score=43.24 Aligned_cols=132 Identities=15% Similarity=0.128 Sum_probs=80.8
Q ss_pred CChhHHHHHHcccCCCCcccHHHHH----HHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIV----SWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVY 249 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 249 (813)
..++.|..+-+.-.. |..+-..+. .-+-+.|++++|.+.|-+-... +.|. .+|.-+........--.++
T Consensus 348 ~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YL 420 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYL 420 (933)
T ss_pred hhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHH
Confidence 555666665544332 222222233 3345688999998888765542 3332 3455555555666667778
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcch--HHHHHHHHHhCCCchHHHHH
Q 046631 250 GLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEV--WNTMIGGYVQNNHPVEAIEL 316 (813)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~ 316 (813)
+.+.+.|.. +..--..|+.+|.+.++.+.-.+..+... ...+. ....+..+.+.+-.++|..+
T Consensus 421 e~L~~~gla---~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 421 EALHKKGLA---NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHcccc---cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 888888875 66666788899999999888888877765 22222 34455555555555555444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.88 Score=39.83 Aligned_cols=91 Identities=19% Similarity=0.145 Sum_probs=64.8
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHH
Q 046631 622 SACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 622 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
..-...++.+++..++..+. -+.|. ...-..-+..+.+.|+|++|..+++++...+.....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 34457789999999998887 66886 556666777888999999999999999655533325566666666554444
Q ss_pred HHHHHHHHHhcCCCC
Q 046631 701 LAEVVAKKLLEMDTR 715 (813)
Q Consensus 701 ~a~~~~~~~~~~~p~ 715 (813)
.=.....++++.+++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 444556667777765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.87 E-value=5.3 Score=40.93 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=107.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHH-HH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCG-IEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHY-CC 655 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~ 655 (813)
-...|..+++.-.+..-.+.|..+|-+..+.| +.++...+++++.-+ ..|+...|..+|+.-... .||...| .-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 35578888888888888999999999999988 567777888888755 467888899999876654 4665444 45
Q ss_pred HHHHHhccCCHHHHHHHHHHh----CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 656 VADMLGRVGKVVEAYEFVKEL----GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
.+.-+.+-++-+.|..+|+.. ... ....+|..++.--..-|+...+..+-+++.+.-|+. ...-+.+
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~-q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe--n~~evF~ 542 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKT-QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE--NLIEVFT 542 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHh-hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH--hHHHHHH
Confidence 566677889999999999854 222 233489999998888999999999989999999986 4444444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=9.1 Score=43.11 Aligned_cols=134 Identities=9% Similarity=0.024 Sum_probs=67.9
Q ss_pred HHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--chHHHHHHHHHhcCCHHH
Q 046631 386 FVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE--GMESYLIDMYAKSGLIKT 463 (813)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 463 (813)
..+.|++..+.++...+...-+ ..-..|..+...+. ....+ ++-..+.+..-.|- .+....+..+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 3567777777777766643211 11222322222111 11222 33333444332222 455556666777788887
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC
Q 046631 464 ARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN 528 (813)
Q Consensus 464 A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 528 (813)
... |..-. ..+...--....+....|+.++|......+-..| .........++..+.+.|.
T Consensus 118 ~~~-~~~~~--p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 118 LLA-FSPEK--PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHH-hcCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 777 33222 2244444445667777888877777776665544 2233444555555554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=2.2 Score=40.49 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=34.7
Q ss_pred HhcCCHHHHHHHHhhcCCCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 046631 456 AKSGLIKTARQIFEKNDSGDR----DQATWNAMIAGYTQNGLLEEAFVAFRQMLEH 507 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 507 (813)
.+.|++++|.+.|+.+....| ...+--.++-++-+.+++++|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 456777777777777765555 2223444566677778888888887777664
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.69 E-value=3.4 Score=43.09 Aligned_cols=147 Identities=10% Similarity=-0.082 Sum_probs=77.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP---DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEH 652 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 652 (813)
...+|..++..+.+.|+++.|...+.++...+... .......-+......|+..+|+..++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45678888888888888888888888887643221 2233344455556778888888888777762 11111 111
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHh------CCHHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLH------GHSELAEVVAKKLLEMDTRNSMPGYHVLLS 726 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~ 726 (813)
...+...+.. ..+.....-..-........++..+..-+... ++.+.+...|+++.+..|.. ...+..++
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~k~~~~~a 299 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW--EKAWHSWA 299 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH--HHHHHHHH
Confidence 1111111100 00000000000000000111344444444444 67888899999999998887 55666555
Q ss_pred HHH
Q 046631 727 NIY 729 (813)
Q Consensus 727 ~~~ 729 (813)
..+
T Consensus 300 ~~~ 302 (352)
T PF02259_consen 300 LFN 302 (352)
T ss_pred HHH
Confidence 544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.65 E-value=4.4 Score=38.93 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHH
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPE--KN-SVTYTTMIL-GYGQHGMSERALSLFRSMKGCGIEP----DAITFVAV 620 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l 620 (813)
..+......+...+.+..+.+.+..... ++ ......... .+...|+++.|...+.+... ..| ....+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 173 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHh
Confidence 3444555555566666777777766553 21 122333333 67888889999998888865 333 22344444
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHhCc-CCChHHHHHHHHHHHHHhC
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYEFVKELGE-EGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 697 (813)
...+...++.+.+...+...... .++ ...+..+...+...+.+++|...+..... .+.....+..+...+...+
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 44466788899999998888754 343 67788888888889999999988887733 3332335566666666667
Q ss_pred CHHHHHHHHHHHhcCCCC
Q 046631 698 HSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~ 715 (813)
+.+.+...+.+.+...|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 251 RYEEALEALEKALELDPD 268 (291)
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 799999999999888875
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.47 Score=46.12 Aligned_cols=162 Identities=11% Similarity=-0.040 Sum_probs=113.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHH----HHHHHHhccCCH
Q 046631 591 QHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYC----CVADMLGRVGKV 666 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~ 666 (813)
-+|+..+|-..++++.+. .+.|...+.-.-++|...|+.+.-...++++... -.||...|. .+.-++..+|.+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 578888999999999885 5667778888888999999999988888888743 356654443 445566799999
Q ss_pred HHHHHHHHHhC-cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC--chhHHHHHHHHHhcCCcHHHHHHHH
Q 046631 667 VEAYEFVKELG-EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM--PGYHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 667 ~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
++|++.-++.. .++...=+..++...+...|++.++.++..+.-..-.+.+. ...|-..+-.|.+.+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999988873 33333223356677778889999999987765433222111 1223345556778899999999998
Q ss_pred HHHHCCCccCCc
Q 046631 744 EMRERGLRKEVG 755 (813)
Q Consensus 744 ~m~~~~~~~~~~ 755 (813)
.=.-+...++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 754444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.077 Score=32.70 Aligned_cols=32 Identities=31% Similarity=0.262 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+|..++..+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56677777777777777777777777777753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.98 Score=39.76 Aligned_cols=93 Identities=9% Similarity=0.051 Sum_probs=58.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVG 664 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 664 (813)
..-+...|++++|..+|+-+.-.+ .-+..-+..|..+|...+++++|+..|.....- .+ |+..+-..+.+|...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l---~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL---LKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccCCCCccchHHHHHHHhC
Confidence 344456777777777777776632 122333445555556677788888777666532 23 3555556777778888
Q ss_pred CHHHHHHHHHHhCcCCCh
Q 046631 665 KVVEAYEFVKELGEEGNV 682 (813)
Q Consensus 665 ~~~~A~~~~~~~~~~~~~ 682 (813)
+.+.|..-|+....+|..
T Consensus 120 ~~~~A~~~f~~a~~~~~~ 137 (165)
T PRK15331 120 KAAKARQCFELVNERTED 137 (165)
T ss_pred CHHHHHHHHHHHHhCcch
Confidence 888888777776555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.43 E-value=6.8 Score=40.20 Aligned_cols=125 Identities=15% Similarity=0.171 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIPE-----KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAIT-FVAVL 621 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll 621 (813)
..+|..+++.-.+..-++.|..+|-++.+ +++..+++++.-++. |+...|..+|+--... .||... ..-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 45688888888888889999999998763 578889999987765 7788999999876663 455543 34556
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHhC
Q 046631 622 SACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYEFVKELG 677 (813)
Q Consensus 622 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 677 (813)
.-+...++-..|..+|+....+ +..+ ...|..+++--..-|++..+..+-+++.
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 6677889999999999976653 2333 6788899998889999998888877763
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.4 Score=44.28 Aligned_cols=101 Identities=10% Similarity=0.082 Sum_probs=69.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcC--CChH-HHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEE--GNVL-EIWGSLLGS 692 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~l~~~ 692 (813)
+-..+..++.+.|+.++|++.+++|.+.+...-.......|+.+|...+.+.++..++.+-... |... -.|...+--
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3345666777899999999999999876322223567778999999999999999998886432 2233 245554444
Q ss_pred HHHhCCH---------------HHHHHHHHHHhcCCCCC
Q 046631 693 CRLHGHS---------------ELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 693 ~~~~g~~---------------~~a~~~~~~~~~~~p~~ 716 (813)
.+..+|. ..|.+.+.++++.+|..
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 4434431 23667888999988885
|
The molecular function of this protein is uncertain. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.34 E-value=8.9 Score=41.14 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=126.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA 623 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 623 (813)
+...|+..++.-.+.|+.+.+.-+|++..-| -...|--.+.-....|+.+-|..++....+--.+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567777788888899999999999988755 3456666666666669999998888877765444444443333334
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHH---HHHHHhC---cCCChHH-HHHHHH-HHHH
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAY---EFVKELG---EEGNVLE-IWGSLL-GSCR 694 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~---~~~~~~~-~~~~l~-~~~~ 694 (813)
+-..|+++.|..+++.+.+++ |+ ...-..-+....+.|..+.+. +++.... ..+.... .+-... -.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 567899999999999998762 76 555556677788999999988 5555542 2222211 111111 1223
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC
Q 046631 695 LHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG 733 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 733 (813)
-.++.+.|..++.++.+..|++ ...|..+.+.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~--k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDC--KVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCcc--HHHHHHHHHHHHhCC
Confidence 3478999999999999999998 788887777766655
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.066 Score=33.06 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 684 EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
.+|..++.++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 36778888888888888888888888888876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.9 Score=41.79 Aligned_cols=179 Identities=13% Similarity=0.069 Sum_probs=120.8
Q ss_pred HHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 046631 565 NYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEY 644 (813)
Q Consensus 565 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 644 (813)
+...+++++...+....--.-.......|++.+|..+|+......- -+......++.++...|+.+.|..++..+-..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~- 197 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQ- 197 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCccc-
Confidence 3455666666655333333344566788999999999999988532 22445667888999999999999999876432
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHH
Q 046631 645 KIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVL 724 (813)
Q Consensus 645 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~ 724 (813)
--.........-+..+.+.....+...+..+...+|+..+.-..|...+...|+.+.|.+.+-.++..+........-..
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 11111222334567777788777777888888888877778888999999999999998887777766544322555566
Q ss_pred HHHHHHhcCCcHH-HHHHHHHH
Q 046631 725 LSNIYAEEGNWEN-VDKVRKEM 745 (813)
Q Consensus 725 l~~~~~~~g~~~~-A~~~~~~m 745 (813)
+..++...|.-+. +..++++|
T Consensus 278 lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 278 LLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 6666666664433 33344443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.5 Score=36.35 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=21.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
+..|+.+.|++.|.+.+.. .+-....|+.-..++.-.|+.++|+.-+++..
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444444432 11223344444444444444444444444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.53 Score=44.67 Aligned_cols=99 Identities=13% Similarity=0.235 Sum_probs=78.6
Q ss_pred HHHHHhhCC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----------
Q 046631 567 AANVFAKIP--EKNSVTYTTMILGYGQH-----GMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG----------- 628 (813)
Q Consensus 567 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g----------- 628 (813)
.+..|..+. +.|-.+|-+++..+... +.++-....++.|.+-|+.-|..+|..|+..+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345565555 56778888888877643 566777778899999999999999999998775433
Q ss_pred -----cHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCH
Q 046631 629 -----LVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKV 666 (813)
Q Consensus 629 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 666 (813)
.-+-++.++++|... |+.||-++-..|++++++.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 224588999999887 9999999999999999999864
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.61 Score=44.25 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=79.7
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC-----------
Q 046631 464 ARQIFEKNDSGDRDQATWNAMIAGYTQN-----GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMG----------- 527 (813)
Q Consensus 464 A~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----------- 527 (813)
..+.|......++|-.+|-+.+..|... +..+=....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 3456666666667888888888777554 456666677888999999999999999999875532
Q ss_pred -----ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 046631 528 -----NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVI 564 (813)
Q Consensus 528 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 564 (813)
.-+-+..++++|...|+-||..+-..|++++++.+..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3356788999999999999999999999999888763
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.14 Score=33.93 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=21.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSL 689 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l 689 (813)
++..+...|.+.|++++|+++++++ ...|+.+.+|..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4455666666666666666666664 4455555555444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.79 E-value=4.1 Score=36.91 Aligned_cols=91 Identities=15% Similarity=0.001 Sum_probs=54.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhC
Q 046631 622 SACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 622 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 697 (813)
..+...+++++|...++..... ..| ..+--.|.......|.+|+|+..++....+.-.......-+..+...|
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 3556677777777776655522 222 222234556666777777777777776554433323344456666677
Q ss_pred CHHHHHHHHHHHhcCCCC
Q 046631 698 HSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~ 715 (813)
+-++|...|+++++.+++
T Consensus 174 ~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 174 DKQEARAAYEKALESDAS 191 (207)
T ss_pred chHHHHHHHHHHHHccCC
Confidence 777777777777776644
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.77 E-value=2.6 Score=36.85 Aligned_cols=41 Identities=15% Similarity=0.273 Sum_probs=19.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC-CChhhHHHHHHHHHhC
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGD-RDQATWNAMIAGYTQN 491 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~ 491 (813)
++..+.+.+........++.+.... .+...+|.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3444444445555555555433222 2344555556666554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.76 E-value=10 Score=44.06 Aligned_cols=110 Identities=17% Similarity=0.039 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVAD 658 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~ 658 (813)
.|.+...-+...+.+++|.-+|+..-+ ..-.+.+|...|+|.+|..+..++.. .-+ ..+-..|+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~----~~de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE----GKDELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC----CHHHHHHHHHHHHH
Confidence 344444444556677777666655332 22345567777777777777665531 112 222345666
Q ss_pred HHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 659 MLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
-+...++.-+|-++..+...++... ...+++...+++|.++....
T Consensus 1008 ~L~e~~kh~eAa~il~e~~sd~~~a------v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLSDPEEA------VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHcccchhHHHHHHHHhcCHHHH------HHHHhhHhHHHHHHHHHHhc
Confidence 6777777777777766654444332 22334444566776665543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.75 E-value=13 Score=40.96 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=51.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHH
Q 046631 452 IDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIEL 531 (813)
Q Consensus 452 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 531 (813)
+.-+...|+..+|.++-.+.. -||-..|---+.+++..++|++-+++-+.+. .+.-|.....+|.+.|+.++
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk--ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK--IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC--CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHH
Confidence 333445556666666655555 4555555555556666666655444433322 13334445555555555555
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANV 570 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 570 (813)
|..++..... +.-.+.+|.+.|++.+|.++
T Consensus 763 A~KYiprv~~---------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 763 AKKYIPRVGG---------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HhhhhhccCC---------hHHHHHHHHHhccHHHHHHH
Confidence 5555433211 11344555555555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.8 Score=42.33 Aligned_cols=154 Identities=13% Similarity=0.012 Sum_probs=109.4
Q ss_pred HhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHhccCcHH
Q 046631 559 SKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAV----LSACSYAGLVD 631 (813)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----l~a~~~~g~~~ 631 (813)
.-.|++.+|...++++.+ .|..+++--=.+|...|+...-...+++..-. ..||...|..+ .-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346777788888888774 48889999899999999999999999998864 35555433332 33456789999
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCCh---HHHHHH--HHHHHHHhCCHHHHHHH
Q 046631 632 EGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGEEGNV---LEIWGS--LLGSCRLHGHSELAEVV 705 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~--l~~~~~~~g~~~~a~~~ 705 (813)
+|.+.-++.. .+.| |.-..-.+...+...|++.++.++..+-...-.. ....|. ..-.+...+.++.|+++
T Consensus 193 dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999887776 6666 4666778889999999999999998876432221 112221 22233455789999999
Q ss_pred HHHHh--cCCCCC
Q 046631 706 AKKLL--EMDTRN 716 (813)
Q Consensus 706 ~~~~~--~~~p~~ 716 (813)
|++-+ +++.++
T Consensus 270 yD~ei~k~l~k~D 282 (491)
T KOG2610|consen 270 YDREIWKRLEKDD 282 (491)
T ss_pred HHHHHHHHhhccc
Confidence 97644 445555
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.71 E-value=5.4 Score=44.85 Aligned_cols=67 Identities=19% Similarity=0.113 Sum_probs=43.0
Q ss_pred CcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCh-------HHHHHHHHHHHHhCC
Q 046631 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQ-------DVGKQTHAYLLRHGI 442 (813)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~ 442 (813)
|...-.++|-.+.++|++++|.++..+.... .......|...+..+....+- +....-|....+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 4445557888899999999999999655543 555667778888888775332 234444555554444
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.71 E-value=2 Score=44.81 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCC--ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELG-EEG--NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM 712 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 712 (813)
..+-..+..++.+.|+.+||++.++++. +.| +...+...|+.++...+.+.++..++.+.-+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3344457777778888888888888873 334 23347778888888888888888888876544
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.60 E-value=3.8 Score=44.30 Aligned_cols=117 Identities=19% Similarity=0.132 Sum_probs=70.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhccCcHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCCHHHH
Q 046631 593 GMSERALSLFRSMKGCGIEPDAITFVAVL-SACSYAGLVDEGLQIFDLMQQEYKIQP--STEHYCCVADMLGRVGKVVEA 669 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 669 (813)
.+.+.|.++++.+.+ .-|+...|...- +.+...|++++|++.|++....-.--| ....+.-++..+.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 456777788888777 466666554443 345667888888888876543101111 233445566667778888888
Q ss_pred HHHHHHhCcCC-ChHHHHHHHHHHH-HHhCCH-------HHHHHHHHHHhc
Q 046631 670 YEFVKELGEEG-NVLEIWGSLLGSC-RLHGHS-------ELAEVVAKKLLE 711 (813)
Q Consensus 670 ~~~~~~~~~~~-~~~~~~~~l~~~~-~~~g~~-------~~a~~~~~~~~~ 711 (813)
.+.+..+.... -...+|..+..+| ...|+. ++|...++++-.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888875443 3332444444433 345666 666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.00 E-value=3.8 Score=43.58 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=68.5
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGL 634 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 634 (813)
.+...++|+++.|.++.++.. +...|..|......+|+++-|.+.|++... |..|+-.|...|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 455677888888888876655 566888888888888888888888887553 556666667777776666
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 635 QIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 635 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
++.+..... | -++....++.-.|+.++..+++.+.
T Consensus 394 kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 394 KLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666555433 2 1444455555567777777666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.98 E-value=23 Score=41.48 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhcc
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAIT--FVAVLSACSYA 627 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~a~~~~ 627 (813)
+|.+..+.+...+.+++|.-+|+..-+ ..-.+.+|...|+|.+|+.+..+|.. .-|... -..|..-+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 344445555667888888888876543 22346788889999999998888653 233332 25677778888
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCc
Q 046631 628 GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGE 678 (813)
Q Consensus 628 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 678 (813)
++.-+|-++..+.... ....+..|++...|++|..+......
T Consensus 1013 ~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred ccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 9988888887766533 23456778888999999988877643
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.78 E-value=4.7 Score=35.18 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=20.0
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhc
Q 046631 112 SVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYST 154 (813)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (813)
.++..+...+.......+++.+...+ ..+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444444555555544443 2344455555555554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.69 E-value=8.9 Score=36.06 Aligned_cols=197 Identities=14% Similarity=0.082 Sum_probs=93.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHH
Q 046631 418 LSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEA 497 (813)
Q Consensus 418 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 497 (813)
-.++....+++.+...+....+.--..... +-....++.|.-+.+++....--+..|+--...|..+|.++.|
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrsl-------fhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSL-------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 344555666777666555543221100000 1112234444445555543222334566667778888888877
Q ss_pred HHHHHHHHH--CCCCCCHH--HHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 046631 498 FVAFRQMLE--HNVTPNVV--TIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAK 573 (813)
Q Consensus 498 ~~~~~~m~~--~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (813)
-..+++.-+ .++.|+.. .|.--+......++...+. ..+..+-..|.+...+++|-..|.+
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~---------------el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF---------------ELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH---------------HHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 777666543 23445432 1211111111222222222 2334444556666666666665554
Q ss_pred CCC--------CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046631 574 IPE--------KN-SVTYTTMILGYGQHGMSERALSLFRSMKGCGI---EPDAITFVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 574 ~~~--------~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~a~~~~g~~~~a~~~~ 637 (813)
-.. ++ -..|-..|-.|....++..|...++.--+.+- .-+..+...|+.+| ..|+.+++..++
T Consensus 176 e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 176 EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 331 11 12344445555556677777777776443221 12234666666665 455555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.9 Score=45.79 Aligned_cols=76 Identities=29% Similarity=0.364 Sum_probs=34.1
Q ss_pred HHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHH
Q 046631 658 DMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWEN 737 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 737 (813)
++..+.|+++.|.++.++.. .+..|..|+.....+|+++.|++.++++ .+ +.-|.-+|.-.|+.+.
T Consensus 326 eLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-----~d-----~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD----DPEKWKQLGDEALRQGNIELAEECYQKA-----KD-----FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS----THHHHHHHHHHHHHTTBHHHHHHHHHHC-----T------HHHHHHHHHHCT-HHH
T ss_pred HHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHcCCHHHHHHHHHhh-----cC-----ccccHHHHHHhCCHHH
Confidence 34445555555554444332 1225555555555555555555555542 11 3333344555555544
Q ss_pred HHHHHHHHHH
Q 046631 738 VDKVRKEMRE 747 (813)
Q Consensus 738 A~~~~~~m~~ 747 (813)
-.++-+....
T Consensus 392 L~kl~~~a~~ 401 (443)
T PF04053_consen 392 LSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.68 E-value=5.4 Score=33.47 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKI 646 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 646 (813)
-....+..+..+|+-++-.++++++.+. -++++.....+..||.+.|+..++.+++.++-+. |+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3444556666677777777777766542 3566666666777777777777777777666655 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.61 E-value=4.7 Score=35.45 Aligned_cols=66 Identities=11% Similarity=-0.026 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHh
Q 046631 425 RNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQ 490 (813)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~ 490 (813)
++.+.+..++..+.-..+....+...-...+...|++.+|..+|+++....|....-.+|+..|..
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 344444444444444433333333334444556666666666666665444444444444444433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.55 E-value=9.8 Score=36.17 Aligned_cols=243 Identities=17% Similarity=0.175 Sum_probs=132.7
Q ss_pred CCHHHHHHHHhhcCCCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHhccCCC
Q 046631 459 GLIKTARQIFEKNDSGDR-----DQATWNAMIAGYTQNGLLEEAFVAFRQMLE---HNV--TPNVVTIASVLPACNPMGN 528 (813)
Q Consensus 459 g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~--~p~~~t~~~ll~~~~~~~~ 528 (813)
...++|..-|++....++ ...+.-.+|..+.+.+++++.++.|.+|.. ..+ .-+..+.++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 345566666665433222 222344567777777777777777777653 111 1234456666666665555
Q ss_pred hHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------C-------CHhHHHHHHHH
Q 046631 529 IELGKQLHGFSIRY-----LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--------K-------NSVTYTTMILG 588 (813)
Q Consensus 529 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~ 588 (813)
.+.-..+++.-.+. +-..=-.+-+.|...|...|++.+..++++++.. . =...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55555555432221 1011111234556667777777777777766541 0 13466667888
Q ss_pred HHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHh-----ccCcHHHHHHHHHHHHHhcCCC--CC---hhHHHHHH
Q 046631 589 YGQHGMSERALSLFRSMKGCGI-EPDAITFVAVLSACS-----YAGLVDEGLQIFDLMQQEYKIQ--PS---TEHYCCVA 657 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~--p~---~~~~~~l~ 657 (813)
|..+++-.+...+|++.+.-.- -|.+ ....+|+-|. +.|.+++|..-|-++-+.|.-. |. ---|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 8888888888888887765322 2333 3345566553 5678888876555554443222 22 23466677
Q ss_pred HHHhccCC----HHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 046631 658 DMLGRVGK----VVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKK 708 (813)
Q Consensus 658 ~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 708 (813)
+++.+.|- -.+|.- .+..|... +...|+.+|. .++..+.+++++.
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIl-AMTnlv~aYQ-~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEIL-AMTNLVAAYQ-NNDIIEFERILKS 328 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHH-HHHHHHHHHh-cccHHHHHHHHHh
Confidence 77777762 122210 12233344 6677787776 3566665555543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.11 E-value=20 Score=38.67 Aligned_cols=131 Identities=9% Similarity=0.045 Sum_probs=86.2
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHH
Q 046631 69 TTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSL 148 (813)
Q Consensus 69 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (813)
+-..|..+|.--.+......+...+..+...- |- --.-|.....-=.+.|..+.+.++|++-+.. ++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl-~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PL-CYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC--cc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 34467666665555555566667777776543 21 1122333444445778888888888877653 56677777776
Q ss_pred HHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC------CCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 046631 149 LNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR------RNVVAWNTIVSWYVKTERYVEAVRQFRMMLRM 220 (813)
Q Consensus 149 i~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 220 (813)
...+... .|+.+..++.|+.... .....|...|.--..++++.....++++.++.
T Consensus 120 ~~f~~n~-----------------~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNN-----------------NGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhcc-----------------CCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6655433 2777778888877653 24456888888888888999999999988773
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=92.10 E-value=16 Score=37.58 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=39.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC----C-ChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGD----R-DQATWNAMIAGYTQ---NGLLEEAFVAFRQMLEHNVTPNVVTIASVLPA 522 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 522 (813)
++-.|-...+++..+++++.+.... + ....-....-++-+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444666666777777777665321 0 11111223344455 67777777777775555455666666555443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.67 E-value=3.8 Score=34.52 Aligned_cols=29 Identities=17% Similarity=-0.002 Sum_probs=13.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.|.-++.+.++++++..+.+.+++.+|++
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 33444444444444444444444444444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.55 E-value=4.8 Score=34.71 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=49.7
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL 695 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 695 (813)
...++.+++..+++.|. -+.|+ ...-..-+..+...|+|++|..+++++...+.....-..|+..|..
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34788999999998887 66886 5555666777889999999999999997776443133444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.46 E-value=1.4 Score=42.98 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 046631 447 MESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLE-----HNVTPNVVTIASVL 520 (813)
Q Consensus 447 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll 520 (813)
+...++..+..+|+.+.+...++++...+| +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 345688889999999999999999887777 888999999999999999999999998876 46777666544443
Q ss_pred H
Q 046631 521 P 521 (813)
Q Consensus 521 ~ 521 (813)
.
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.38 Score=30.11 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 722 HVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
+..|+++|.+.|+|++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678888999999999999888854
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.3 Score=29.99 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566666777777777777777777777666
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.30 E-value=17 Score=36.26 Aligned_cols=20 Identities=5% Similarity=-0.089 Sum_probs=13.3
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 046631 587 LGYGQHGMSERALSLFRSMK 606 (813)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~ 606 (813)
..+.+.++++.|.+.|+-..
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34456678888888777543
|
It is also involved in sporulation []. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.04 E-value=30 Score=38.61 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPEKN 578 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 578 (813)
...|+..|...+++..|..++-...+++
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccChH
Confidence 3448888899999999998888877654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.57 E-value=61 Score=41.42 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=77.3
Q ss_pred HHHHHHHCCCcHHHHHHHHHH----HHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHh
Q 046631 382 MISAFVQNGLDDEGLMLVYEM----QKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAK 457 (813)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m----~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (813)
+..+-.+++.+..|+..++.- .+. .....-|-.+...|...+++|...-+....... ..+ ..-+-....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~sl-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----PSL-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----ccH-HHHHHHHHh
Confidence 334445566666666666662 211 111222333344666667766665555431110 011 223445566
Q ss_pred cCCHHHHHHHHhhcCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhccCCChHHHHHH
Q 046631 458 SGLIKTARQIFEKNDSGDRD-QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIA-SVLPACNPMGNIELGKQL 535 (813)
Q Consensus 458 ~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~ 535 (813)
.|++..|...|+.+.+.+|+ ...++-++......|.++.++...+-.... ..+....++ .=+.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 78888888888888777665 567777777666777776666644443332 122222222 222333555666655555
Q ss_pred HH
Q 046631 536 HG 537 (813)
Q Consensus 536 ~~ 537 (813)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 44
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.44 E-value=12 Score=34.06 Aligned_cols=92 Identities=11% Similarity=-0.063 Sum_probs=68.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHhCcCCChH----HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 655 CVADMLGRVGKVVEAYEFVKELGEEGNVL----EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 655 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
.+...+..+|++++|+.-++.....+... .+--.|.......|.+++|...++...+-.-. +....+-|+++.
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~---~~~~elrGDill 170 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA---AIVAELRGDILL 170 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH---HHHHHHhhhHHH
Confidence 44566789999999999998765444222 12345667778889999999988765433222 455678899999
Q ss_pred hcCCcHHHHHHHHHHHHCC
Q 046631 731 EEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 731 ~~g~~~~A~~~~~~m~~~~ 749 (813)
..|+.++|+.-|++..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 9999999999999999764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.09 E-value=17 Score=34.30 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----ChhHHHHHH
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP----STEHYCCVA 657 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~ 657 (813)
|+--...|..+|..+.|-..+++.-+. ...-+.++|++++++....+...- -...+..+.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 344455566666665555555443221 123344455555554433211111 133455566
Q ss_pred HHHhccCCHHHHHHHHHHh-------CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC----CCCCCchhHHHHH
Q 046631 658 DMLGRVGKVVEAYEFVKEL-------GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMD----TRNSMPGYHVLLS 726 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~~~~~~~~~l~ 726 (813)
.+|.+..++++|-..+.+- ..-+.....+-+.+-.+....|+..|+..++...++. |++ ......|.
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed--~r~lenLL 235 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSED--SRSLENLL 235 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHH--HHHHHHHH
Confidence 6777777777776655543 1112222234444455555567888888887765542 333 33333333
Q ss_pred HHHHhcCCcHHHHHHH
Q 046631 727 NIYAEEGNWENVDKVR 742 (813)
Q Consensus 727 ~~~~~~g~~~~A~~~~ 742 (813)
.. ...|+.|++..+.
T Consensus 236 ~a-yd~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TA-YDEGDIEEIKKVL 250 (308)
T ss_pred HH-hccCCHHHHHHHH
Confidence 33 3556666665543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.98 E-value=12 Score=32.39 Aligned_cols=55 Identities=9% Similarity=-0.038 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCCh
Q 046631 424 LRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQ 478 (813)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 478 (813)
.++.+.+..+++.+.-..+....+...-.-.+...|++++|..+|+++.+..+..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 3444444444444444444444333334455667777777777777776544443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.95 E-value=8.2 Score=38.58 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCH----H
Q 046631 596 ERALSLFRSMKGCGIEPDAI--TFVAVLSACSYAGL--VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKV----V 667 (813)
Q Consensus 596 ~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~ 667 (813)
+.+..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+. |+++...+|..++-+-.-.+.. +
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLall~~~~~~~~~ 238 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLALLEDPEEKIVE 238 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHHhcCCchHHHHH
Confidence 56777888888878766544 33334433322222 45788888888888 9988877787776555433333 3
Q ss_pred HHHHHHHHhCcCC
Q 046631 668 EAYEFVKELGEEG 680 (813)
Q Consensus 668 ~A~~~~~~~~~~~ 680 (813)
+-.++.+.+..++
T Consensus 239 ~i~ev~~~L~~~k 251 (297)
T PF13170_consen 239 EIKEVIDELKEQK 251 (297)
T ss_pred HHHHHHHHHhhCc
Confidence 3334444444333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.75 E-value=3.2 Score=38.01 Aligned_cols=126 Identities=15% Similarity=0.107 Sum_probs=81.0
Q ss_pred hCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCCh
Q 046631 607 GCGIEPDAITFVAVLS--ACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNV 682 (813)
Q Consensus 607 ~~g~~p~~~~~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 682 (813)
..++.++...-...=+ -|-..|.++-|.--|.+.. .+.|+ +.+||-|+--+...|+++.|.+.|+.. +.+|..
T Consensus 56 ~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y 132 (297)
T COG4785 56 SRALTDEERAQLLFERGVLYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 132 (297)
T ss_pred hccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc
Confidence 3455565543322222 3556677777777676665 67887 888888888888999999999999886 444433
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCc--HHHHH
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW--ENVDK 740 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~--~~A~~ 740 (813)
-.+...-+-++.--|+++.|.+-+.+..+.+|++ | +..| |+|....+. .+|..
T Consensus 133 ~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D--P--fR~L-WLYl~E~k~dP~~A~t 187 (297)
T COG4785 133 NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND--P--FRSL-WLYLNEQKLDPKQAKT 187 (297)
T ss_pred hHHHhccceeeeecCchHhhHHHHHHHHhcCCCC--h--HHHH-HHHHHHhhCCHHHHHH
Confidence 3233333334444688899998888888888887 4 2333 555544443 34444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.71 E-value=3 Score=40.54 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=72.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 046631 543 LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-K--------NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD 613 (813)
Q Consensus 543 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 613 (813)
|......+...++..-....+++++...+-++.. | ...+|-.+ +..-+.++++-++..=+.-|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 4455555566666666667788888888777662 2 22333332 233467899999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046631 614 AITFVAVLSACSYAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 614 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 643 (813)
..+++.+++.+.+.+++.+|.++...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999888777654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.45 Score=29.80 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
|..|...|.+.|++++|+.++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666677777777777766443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.60 E-value=1.2 Score=43.50 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=65.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHHHHHHHhC
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 697 (813)
-..-|.++|.+++|+..|.... .+.| ++..+..-..+|.+..++..|+.=.+... .+......|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888887766 4567 67777777888888888877765544432 11112225555555656667
Q ss_pred CHHHHHHHHHHHhcCCCCC
Q 046631 698 HSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~ 716 (813)
+.++|.+-++.+++++|.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 8888888888888888885
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.23 E-value=7 Score=35.44 Aligned_cols=25 Identities=28% Similarity=0.125 Sum_probs=14.4
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 692 SCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 692 ~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+|-+...++.|+.-|+++++++|..
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcch
Confidence 4444455566666666666666654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.20 E-value=25 Score=35.01 Aligned_cols=19 Identities=11% Similarity=-0.046 Sum_probs=12.8
Q ss_pred HHCCCcHHHHHHHHHHHHC
Q 046631 387 VQNGLDDEGLMLVYEMQKQ 405 (813)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~ 405 (813)
.+.|+.+.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 4567777777777776553
|
It is also involved in sporulation []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.16 E-value=27 Score=36.20 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=56.6
Q ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC--CchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 679 EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS--MPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.......|..+...++++|.++.|...+.++...++... .+......+.++...|+..+|...++...+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455899999999999999999999999988663321 2566666788999999999999999888873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.06 E-value=2.9 Score=40.80 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKG-----CGIEPDAITFVAVL 621 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll 621 (813)
++..++..+..+|+.+.+.+.++++.. -|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 567778888888888888888887763 2677888888888888888888888887765 46667666555444
Q ss_pred HH
Q 046631 622 SA 623 (813)
Q Consensus 622 ~a 623 (813)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.04 E-value=7.8 Score=34.60 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=55.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC--CHHHHHHHHHHh
Q 046631 599 LSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVG--KVVEAYEFVKEL 676 (813)
Q Consensus 599 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~ 676 (813)
+++++.+.+.|+.|+...+..+++.+.+.|.+....+++. +++-+|.....+.+-.+.... -..-|.++++++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 5556666667777777777777777777777655554442 255555444443333332221 133444555554
Q ss_pred CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 677 GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 677 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
.. .+..++..+...|++-+|.++.++.
T Consensus 89 ~~------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 GT------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hh------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 32 3344455566667777777766654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.64 Score=28.42 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
..+..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999988643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.93 E-value=19 Score=34.35 Aligned_cols=204 Identities=13% Similarity=0.132 Sum_probs=120.2
Q ss_pred CCCCchhHHHHHHHHH-HhcCCHHHHHHHHhhCCC--C-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CC-
Q 046631 543 LLDQNVFVGTSLIDMY-SKSGVINYAANVFAKIPE--K-----NSVTYTTMILGYGQHGMSERALSLFRSMKGC---GI- 610 (813)
Q Consensus 543 ~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~- 610 (813)
+-+||+..-|..-..- .+..++++|+.-|++..+ + .-.+...+|..+.+.+++++-++.|++|..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3455555444322111 233467777777776652 1 2345566788888888888888888877541 11
Q ss_pred -CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC----CCCChhHHHHHHHHHhccCCHHHHHHHHHHhC-----cCC
Q 046631 611 -EPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK----IQPSTEHYCCVADMLGRVGKVVEAYEFVKELG-----EEG 680 (813)
Q Consensus 611 -~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~ 680 (813)
.-+..+.+.+++-.+...+.+--..+++.-.+... -..-..+-.-|+..|...|.+.+-.++++++. +++
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 12334566666655555555444444433322211 11124455678889999998888888888762 111
Q ss_pred --------ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH----HHHHHhcCCcHHHHH-HHHHHH
Q 046631 681 --------NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL----SNIYAEEGNWENVDK-VRKEMR 746 (813)
Q Consensus 681 --------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l----~~~~~~~g~~~~A~~-~~~~m~ 746 (813)
....+|..=+..|..+.+...-..++++++.+..--.+|...-.+ +.++.+.|+|++|.. +|+..+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 123366666788888888888888999988765433113332222 334668899998876 444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.89 E-value=5.5 Score=35.20 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=71.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChh-HH--HHHHHHHhccCC
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTE-HY--CCVADMLGRVGK 665 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~--~~l~~~~~~~g~ 665 (813)
.+.+..++|+.-|.++.+.|...-++ ............|+...|...|+++-.. .-.|-+. -. ..-..++...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 45566777777777777766443332 1122223345677777777777777655 2223211 11 122344567777
Q ss_pred HHHHHHHHHHhCcCCChH--HHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 666 VVEAYEFVKELGEEGNVL--EIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 666 ~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
+++....++-+...++.. ..-.+|.-+-.+.|++..|...|..+.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777777777764444332 2456677777777888888887777765
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.77 E-value=0.074 Score=46.90 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=54.9
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCc
Q 046631 112 SVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNV 191 (813)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 191 (813)
.++..+.+.+.......+++.+...+...+....+.++..|++. +..+...+.++....
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~------------------~~~~~l~~~L~~~~~--- 70 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKY------------------DPYEKLLEFLKTSNN--- 70 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCT------------------TTCCHHHHTTTSSSS---
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhc------------------CCchHHHHHcccccc---
Confidence 35667777777888888888888776666778888888888887 666666666663332
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHH
Q 046631 192 VAWNTIVSWYVKTERYVEAVRQFRMM 217 (813)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~l~~~m 217 (813)
.-...++..+-+.|.+++|.-++.++
T Consensus 71 yd~~~~~~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 71 YDLDKALRLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp S-CTHHHHHHHTTTSHHHHHHHHHCC
T ss_pred cCHHHHHHHHHhcchHHHHHHHHHHc
Confidence 23344555556666666666655543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.70 E-value=0.61 Score=28.73 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHhccCCHHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAY 670 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~ 670 (813)
..+|..++.+|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 555555555555555555543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=87.68 E-value=36 Score=35.30 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=25.8
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHh-ccCCHHHHHHHHHHh
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLG-RVGKVVEAYEFVKEL 676 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 676 (813)
.+.+.|-+..|.++.+-+. .+.|+ +.....+|+.|+ ++++++--+++.+..
T Consensus 112 ~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 4455566666666555554 33442 333444445443 555555555555543
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.63 E-value=1.3 Score=27.12 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666777777777666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.04 E-value=22 Score=31.82 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=55.9
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHH
Q 046631 576 EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCC 655 (813)
Q Consensus 576 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 655 (813)
.++...+..++..+.+.|++.. +.+++..++-+|.......+-... +....+.++--.|.++.+ ..+..
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~~~~~ 94 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG-----TAYEE 94 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-----hhHHH
Confidence 4667788888888888887544 445555666677665554443322 233444444444544311 13566
Q ss_pred HHHHHhccCCHHHHHHHHHHh
Q 046631 656 VADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~ 676 (813)
+++.+...|++-+|.++.++.
T Consensus 95 iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHc
Confidence 777888888888888888775
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.02 E-value=1 Score=27.21 Aligned_cols=28 Identities=14% Similarity=0.030 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
.++.++.+.|+.++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3344444444555555555544444443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.99 E-value=27 Score=32.80 Aligned_cols=97 Identities=10% Similarity=-0.015 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHhC-----cCCChH-H-HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch---
Q 046631 652 HYCCVADMLGRV-GKVVEAYEFVKELG-----EEGNVL-E-IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG--- 720 (813)
Q Consensus 652 ~~~~l~~~~~~~-g~~~~A~~~~~~~~-----~~~~~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--- 720 (813)
.+..+.+.|... .++++|+..++... ++.... . .+-.....-...+++.+|+.+|+++.....+++...
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 344566666554 66777777776651 111111 0 122222233445778889999988876555441111
Q ss_pred -hHHH-HHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 721 -YHVL-LSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 721 -~~~~-l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
-|.+ -+-++...++.-.+...+++-.+.
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 1222 222333335555666666666654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=86.47 E-value=3.6 Score=28.45 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcC
Q 046631 721 YHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAG 796 (813)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 796 (813)
++..++-.+.+.|++++|.+..+.+.+. +|.+.+.......+.+++.+.|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccC
Confidence 3556777899999999999999999943 5666666555555556666654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.41 E-value=11 Score=40.36 Aligned_cols=150 Identities=21% Similarity=0.161 Sum_probs=96.5
Q ss_pred hcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 046631 560 KSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDL 639 (813)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 639 (813)
-.|+++.|-.++..+.+ ...+.++.-+.++|..++|+++ .+|..-... ...+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe---lal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRFE---LALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhhh---hhhhcCcHHHHHHHHHh
Confidence 45677777776666553 2334555666677777777653 333332222 22467888888887654
Q ss_pred HHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc
Q 046631 640 MQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP 719 (813)
Q Consensus 640 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 719 (813)
.. +..-|..|+++....|++..|.+-+.+.. -|..|+-.+...|+.+.-..+...+-+.+..+ .
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--~ 726 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR-------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--L 726 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc-------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc--h
Confidence 42 45668889999999999999998888764 34555666666777776556666555555554 2
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
.+ .+|...|++++..+++.+-
T Consensus 727 AF-----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 AF-----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HH-----HHHHHcCCHHHHHHHHHhc
Confidence 22 3677788888888877543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.31 E-value=54 Score=37.05 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhccc
Q 046631 297 WNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQL 343 (813)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 343 (813)
--.+|-.+.+.|++++|.++. ...+ .........|...+..+...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~-~~~~-~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVA-NENR-NQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHH-HHTG-GGS-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHH-HHhh-hhhcchhHHHHHHHHHHHhC
Confidence 335666777888888888776 3333 33555566677777777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.25 E-value=4.9 Score=39.51 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=62.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV 663 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 663 (813)
.+-|.++|.+++|+..|...+. +.| +.+++..-..||.+...+..|..-....+.- .-. +..|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999887 677 8899999999999999998887766655522 111 33344444444444
Q ss_pred CCHHHHHHHHHHh-CcCCCh
Q 046631 664 GKVVEAYEFVKEL-GEEGNV 682 (813)
Q Consensus 664 g~~~~A~~~~~~~-~~~~~~ 682 (813)
|+..+|.+=++.. ..+|+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc
Confidence 5555555544443 344543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.14 E-value=9.3 Score=34.89 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI--TFVAVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
.+..+..-|.+.|+.+.|++.|.++.+....+... .+..+++.+...+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34445555555566666666666655544333332 34455555555666666555555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.00 E-value=1.1 Score=25.56 Aligned_cols=24 Identities=8% Similarity=0.256 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHH
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677888888888888888765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.54 E-value=41 Score=33.48 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=11.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 689 LLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 689 l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
.+.++...|+. +|...+.++.+.+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 33444444442 34555555554444
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.28 E-value=15 Score=28.93 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=48.0
Q ss_pred HHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcH-HHHHHHHHHH
Q 046631 670 YEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWE-NVDKVRKEMR 746 (813)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~m~ 746 (813)
..+-..+..+|+..+....+...+...|+++.|.+.+-.++..++.......-..|..++...|.-+ -+.++.++|.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3344445566766667778888888888888888888888887766544566666667777666643 4445555543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.20 E-value=54 Score=36.53 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=80.2
Q ss_pred hcCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 046631 591 QHGMSERALSLFRSMKG-------CGIEPDAITFVAVLSACSYAG-----LVDEGLQIFDLMQQEYKIQPSTEHYCCVAD 658 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 658 (813)
...+.+.|+.+|+.+.+ .| .......+..+|.+.. +.+.|..++....+. | .|+...+ ++.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~--lg~ 333 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYL--LGV 333 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHH--HHH
Confidence 34555666666666554 44 2223444445554432 556677777666543 2 2333333 333
Q ss_pred HHhcc---CCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh
Q 046631 659 MLGRV---GKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE 731 (813)
Q Consensus 659 ~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 731 (813)
++... .+...|.++|......+... +...+..++.. ..+.+.|..+++++.+.++ +.+...++..+.-
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~----~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELAFAYYKKAAEKGN----PSAAYLLGAFYEY 408 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC----hhhHHHHHHHHHH
Confidence 33322 35677888888777667665 33333333322 2366778888888877772 2333333333322
Q ss_pred c-CCcHHHHHHHHHHHHCCCc
Q 046631 732 E-GNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 732 ~-g~~~~A~~~~~~m~~~~~~ 751 (813)
. ++++.+.-.+..+.+.|..
T Consensus 409 g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 409 GVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred ccccccHHHHHHHHHHHhhhh
Confidence 2 7777777777777666643
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.78 E-value=0.53 Score=46.18 Aligned_cols=92 Identities=10% Similarity=-0.006 Sum_probs=62.0
Q ss_pred ccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHH
Q 046631 662 RVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 662 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 740 (813)
..|.+++|++.+... +..|....++..-..++.+.++...|++-+..+++++|+. ..-|-.-+.+....|+|++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds--a~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS--AKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc--ccccchhhHHHHHhhchHHHHH
Confidence 455566676666654 4444544455555666667777777777777777777776 6667777777777788888888
Q ss_pred HHHHHHHCCCccCCc
Q 046631 741 VRKEMRERGLRKEVG 755 (813)
Q Consensus 741 ~~~~m~~~~~~~~~~ 755 (813)
.+....+.+.....+
T Consensus 204 dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 204 DLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHhccccHHHH
Confidence 777777776654443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.62 E-value=12 Score=33.56 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCc
Q 046631 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 751 (813)
+++|...|+++.+.+|.+ ..+...| .+. .+|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~n--e~Y~ksL-e~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN--ELYRKSL-EMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHH-HHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc--HHHHHHH-HHH------HhhHHHHHHHHHHHhh
Confidence 577888899999999998 5554444 222 3677788887766544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.62 E-value=3.1 Score=28.78 Aligned_cols=37 Identities=22% Similarity=0.068 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHH
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHV 723 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~ 723 (813)
....+.-++.+.|+++.|.+..+.+++.+|++ ..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N--~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDN--RQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS---HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc--HHHHH
Confidence 34567778899999999999999999999998 55433
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.53 E-value=25 Score=33.19 Aligned_cols=94 Identities=13% Similarity=-0.059 Sum_probs=65.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh---------CcCCChHH----------HHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKEL---------GEEGNVLE----------IWGSLLGSCRLHGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 713 (813)
...-++-+.+.|++.+|..-|.++ +++|..+. .+-..-.++...|++-++++-...++...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 334455566777777776655542 45554431 22233345556788999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 714 TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 714 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
|.+ ..+|.--+.+.+..=+.++|..-+.+..+.
T Consensus 261 ~~n--vKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 261 PGN--VKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred Cch--HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 999 888888888877777777888888888743
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.33 E-value=8.4 Score=37.78 Aligned_cols=62 Identities=19% Similarity=0.070 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..+.|-.++.+.++++.|..+.+.++.+.|++ +.-..--|-+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d--p~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPED--PYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 56777888899999999999999999999998 766667888999999999999988888754
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.15 E-value=81 Score=35.75 Aligned_cols=461 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHH-HhCCCCCCcHHHHHHHHHHHH-hcCChHHHHHHHhhcCCCC---------cchHHHHHHHHHhCCCc
Q 046631 242 YKSADVVYGLLV-KLGSEYVNDLFVASSAIFMYA-ELGCFDFARKIFDNCLERN---------TEVWNTMIGGYVQNNHP 310 (813)
Q Consensus 242 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~g~~ 310 (813)
+..|.+.++.+. +..+....+..++-.+...|. ...+++.|+..+++..... -..-..++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Q ss_pred hHHHHHHHHHHHhCCC---CCChhhHHHH-HHHhcccCcchHHHHHHHHHHH--hcccchhhhhccCCCCCcchHHHHHH
Q 046631 311 VEAIELFVQVLELDEI---VFDDVTFLSA-LSAVSQLQELDLGQQLHAYIIK--NFVALPVIVLNAVIERDVVSWNTMIS 384 (813)
Q Consensus 311 ~~A~~~~~~~m~~~g~---~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~li~ 384 (813)
. |...+++......- .+-...|..+ +..+...++...|.+.++.+.. ....+ +.+.++-.++.
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d----------~~~~v~~~l~~ 185 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD----------PAVFVLASLSE 185 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC----------HHHHHHHHHHH
Q ss_pred HH--HHCCCcHHHHHHHHHHHHCCCCC---------CHhHHHHHHHHHh--cCCChHHHHHHHHHHHHhCCCCcchHHHH
Q 046631 385 AF--VQNGLDDEGLMLVYEMQKQGFMI---------DSVTVTALLSAAS--NLRNQDVGKQTHAYLLRHGIHFEGMESYL 451 (813)
Q Consensus 385 ~~--~~~g~~~~A~~~~~~m~~~g~~p---------d~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 451 (813)
+. .+.+..+++++.++++......+ -..+|..++..++ ..|+++.+...+..+.+ .
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~-----------~ 254 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ-----------F 254 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------H
Q ss_pred HHHHHhcC---------------------CHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCCh---------HHHHHHH
Q 046631 452 IDMYAKSG---------------------LIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLL---------EEAFVAF 501 (813)
Q Consensus 452 ~~~~~~~g---------------------~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---------~~A~~~~ 501 (813)
++...+.. .-.. .-+|.-++ ..+....--++.+.....+. ++|++..
T Consensus 255 ~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~-~~~f~wl~--~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i 331 (608)
T PF10345_consen 255 LDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGT-PLVFSWLP--KEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQI 331 (608)
T ss_pred HHHhhcCccCCCcCCCeeEEeecccccccCCCc-eeEEeecC--HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----C
Q 046631 502 RQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP-----E 576 (813)
Q Consensus 502 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~ 576 (813)
++....+-.....+...+..-......+..-..++.-+.. +-.|++..|...++.+. .
T Consensus 332 ~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~-----------------~~~~~~~~a~~~l~~~~~~~~~~ 394 (608)
T PF10345_consen 332 EKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN-----------------FIRGDWSKATQELEFMRQLCQRS 394 (608)
T ss_pred HHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH-----------------HHCcCHHHHHHHHHHHHHHHhcC
Q ss_pred CC-------HhHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHHH--HHHHHhccCcHHH----HHH
Q 046631 577 KN-------SVTYTTMILGYGQHGMSERALSLFR--------SMKGCGIEPDAITFVA--VLSACSYAGLVDE----GLQ 635 (813)
Q Consensus 577 ~~-------~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~--ll~a~~~~g~~~~----a~~ 635 (813)
++ ...+....-.+...|+.+.|...|. .....+...+...+.. ++-.+...+.-.. ..+
T Consensus 395 ~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~ 474 (608)
T PF10345_consen 395 PSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNE 474 (608)
T ss_pred ccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHH
Q ss_pred HHHHHHHhcCCCCC---hhHHHHHHHHH---------hccCCHHHHHHHH-HHhCcCCChHHHHHHHHHHHHHhCCHHHH
Q 046631 636 IFDLMQQEYKIQPS---TEHYCCVADML---------GRVGKVVEAYEFV-KELGEEGNVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 636 ~~~~~~~~~~~~p~---~~~~~~l~~~~---------~~~g~~~~A~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 702 (813)
+++.+.....-.|+ ...+..++.++ .....+.++++.. +.....--..-+.+.+..-+. .|+..+.
T Consensus 475 l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~ 553 (608)
T PF10345_consen 475 LLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQ 553 (608)
T ss_pred HHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHH
Q ss_pred HHHHHHHhcCCCCC-------CCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 703 EVVAKKLLEMDTRN-------SMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 703 ~~~~~~~~~~~p~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
......+..+-... +....-.++.+.|...|+.++|.....+.
T Consensus 554 ~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 554 AKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=83.72 E-value=85 Score=35.63 Aligned_cols=67 Identities=12% Similarity=-0.013 Sum_probs=41.4
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCCh
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDY 242 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 242 (813)
+++....+.+..- ..+...-.....+....|+.++|....+.+-..|. .....+..+++.+.+.|.+
T Consensus 113 ~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 113 EDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred cCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCC
Confidence 7777777733232 23444445566677778888888877777765552 3445566666666655543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.69 E-value=2.4 Score=25.82 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788999999999999999999998753
|
... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=82.94 E-value=55 Score=32.86 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhh
Q 046631 393 DEGLMLVYEMQKQGFMIDSVTVTALLSAASN--LRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEK 470 (813)
Q Consensus 393 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 470 (813)
++.+.+++.|.+.|++-+..+|.+....... ..+++ .....|..+|+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~------------------------------~~~~ra~~iy~~ 128 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYD------------------------------EIIQRAKEIYKE 128 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHH------------------------------HHHHHHHHHHHH
Confidence 4566788888999988888777653322221 11111 113345555555
Q ss_pred cCCCCC-----ChhhHHHHHHHHHhCCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhccCCC--hHHHHHHHH
Q 046631 471 NDSGDR-----DQATWNAMIAGYTQNGL----LEEAFVAFRQMLEHNVTPNVV--TIASVLPACNPMGN--IELGKQLHG 537 (813)
Q Consensus 471 ~~~~~~-----~~~~~~~li~~~~~~~~----~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~ 537 (813)
|.+..| +-.++..|+.. ..++ .+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+..+++
T Consensus 129 mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 129 MKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred HHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 554443 33344444333 2222 245667777777777665433 33444444333322 346777888
Q ss_pred HHHHcCCCCchhHHHHHH
Q 046631 538 FSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 538 ~~~~~~~~~~~~~~~~li 555 (813)
.+.+.|+++....|..+.
T Consensus 207 ~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 207 ALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHcCCccccccccHHH
Confidence 888888887776665543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.88 E-value=34 Score=30.49 Aligned_cols=125 Identities=10% Similarity=0.097 Sum_probs=83.9
Q ss_pred HHhcCCHHHHHHHHhhCCCCCHhHHHHHH-----HHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHH--HHhccCc
Q 046631 558 YSKSGVINYAANVFAKIPEKNSVTYTTMI-----LGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLS--ACSYAGL 629 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~--a~~~~g~ 629 (813)
+.+.+..++|+.-|..+.+.+.-.|-.|. ....+.|+...|+..|++.-.....|-.. -..-|=. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45678889999999988876655555543 44667889999999999988754444433 1222222 3457888
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChH
Q 046631 630 VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVL 683 (813)
Q Consensus 630 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 683 (813)
+++.....+-+... +-.-....-..|+-+-.+.|++.+|.++|..+......+
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 88887776665432 211124555677788889999999999999886544333
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.82 E-value=3 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.087 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+|..+...+...|+++.|...++++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666667777777777776666554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=82.60 E-value=10 Score=35.76 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCH-------HHHHHHHHHHhcCCCCCC----CchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 685 IWGSLLGSCRLHGHS-------ELAEVVAKKLLEMDTRNS----MPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
++--+.|.|+..|+. ..|...|+++++.+..+. ......++|.++.+.|+.++|.+.+.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 667778888888874 345566666665543311 1356778999999999999999999999854
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.31 E-value=73 Score=33.84 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=58.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
|....-+++..+..+-++.-+..+..+|..-| -+...|..++..|... ..+.-..+|+.+.+..+. |+..-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55566677777777777777777777777743 4556666777777666 445556666666665543 3334444555
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 046631 557 MYSKSGVINYAANVFAKI 574 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~ 574 (813)
.|-+ ++...+...|.++
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 5544 6666666666554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=82.25 E-value=3.7 Score=36.68 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC----cHHHHHHHHHHH
Q 046631 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN----WENVDKVRKEMR 746 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~ 746 (813)
+++|+.-+++++.++|+. ..++..+|++|...+. ..+|.++|++..
T Consensus 51 iedAisK~eeAL~I~P~~--hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNK--HDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 456677778888899988 7888888888876543 334444444443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.13 E-value=3.8 Score=38.24 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=58.3
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCCHHHHHHH-HHHhCcCCChHHHHHHHHHHHHHhCCHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPST-EHYCCVADMLGRVGKVVEAYEF-VKELGEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
-|.....++.|+..+.+.+ -+.|+. .-|..=+.++.+..+|+.+..= .+.+...|+..-....+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3455566777877766666 567875 4455666677777788777654 3334566666656666777777777788
Q ss_pred HHHHHHHHHhcC
Q 046631 701 LAEVVAKKLLEM 712 (813)
Q Consensus 701 ~a~~~~~~~~~~ 712 (813)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888887543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=81.89 E-value=10 Score=34.56 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHhhCCCChhHHHHHHHHHHHh
Q 046631 192 VAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI--SFVNVFPALSSLGDYKSADVVYGLLVKL 255 (813)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 255 (813)
..+..+..-|++.|+.++|++.|.++++....|... .+..+|+.+...+++..+.....++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 367788899999999999999999998876555443 6677788888888888888777766554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.23 E-value=1.9 Score=25.92 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 721 YHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.+..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999864
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=81.20 E-value=1.5 Score=36.66 Aligned_cols=22 Identities=59% Similarity=1.165 Sum_probs=18.7
Q ss_pred ceeEEEECCEEEEEecCCCCCCChHH
Q 046631 755 GCSWIDVGGYVNRFASKDQEHPQSHK 780 (813)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (813)
||||+++ +.|.+||.+||+...
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~ 23 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSEL 23 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHH
Confidence 6889877 899999999999733
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.94 E-value=99 Score=34.49 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhCC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-CCChHHHHHHHHHHHHcC
Q 046631 480 TWNAMIAGYTQNG-----LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNP-MGNIELGKQLHGFSIRYL 543 (813)
Q Consensus 480 ~~~~li~~~~~~~-----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~ 543 (813)
....+...|.+.. +.+.|+.+|.+....| .|+...+...+.-... ..+...|.+++....+.|
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 3444444444432 4555677776666655 3444333222222222 234455555655555555
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.71 E-value=2.7 Score=27.04 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888999999999999999988875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 8e-09
Identities = 83/672 (12%), Positives = 186/672 (27%), Gaps = 226/672 (33%)
Query: 241 DYKSADVVYGLL---VK-LGSEYVNDLF--VASSAIF--MYAELGCFDFARKIFDNCLER 292
Y+ D++ V + V D+ + S + ++F L +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 293 NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQL 352
E+ ++ FV +E++ + FL +S ++ +
Sbjct: 75 QEEM-----------------VQKFV-----EEVLRINYKFL-----MSPIKTEQRQPSM 107
Query: 353 HAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSV 412
+ + ++ +RD + +N F + V +Q
Sbjct: 108 ---MTRMYIE----------QRDRL-YND-NQVFAK--------YNVSRLQP-------- 136
Query: 413 TVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGM----ESYLIDMYAKSGLIKTAR--Q 466
L A LR +L G+ ++++ S ++ +
Sbjct: 137 -YLKLRQALLELRP-------AKNVLID-----GVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 467 IFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPM 526
IF W + + E + Q L + + PN + + + N
Sbjct: 184 IF------------W--LNLKNCNS---PETVLEMLQKLLYQIDPNWTSRSD--HSSNIK 224
Query: 527 GNIELGKQLHGFSIRYLLDQNVFVGTSLI---DMYSKSGVINY------------AANVF 571
I + +R LL + L+ ++ + N V
Sbjct: 225 LRIHSIQA----ELRRLLKSKPYE-NCLLVLLNVQNAK-AWNAFNLSCKILLTTRFKQVT 278
Query: 572 AKIPEKNSVTYTTMILGYGQHGMSER-ALSLFRSMKGCGIE--PDAITFVAVLSACSYAG 628
+ ++ T T + L + ++ SL C + P + A
Sbjct: 279 DFL---SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 629 LVDEGLQIFD------------LMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYE----F 672
+ +GL +D +++ + E+ + ++ F
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--------------KMFDRLSVF 381
Query: 673 VKELGEEGNVLEI-WG-----------------SLL------GSCRLHG-----HSELAE 703
+L + W SL+ + + +L
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 704 VVA--KKLLE-------MDTRNSMP-----------GYHVLLSNIYAEEGNWENVDKVRK 743
A + +++ D+ + +P G+H L NI + E + R
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNI----EHPERMTLFRM 495
Query: 744 ---EMR--ERGLRKEVGCSWIDVGGYVNRFA--SKDQEH-PQSHKIYEMLERLAME-MRN 794
+ R E+ +R + +W G +N + + + YE L ++ +
Sbjct: 496 VFLDFRFLEQKIRHD-STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 795 AGNKTIQNSNVD 806
I + D
Sbjct: 555 IEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 2e-08
Identities = 97/601 (16%), Positives = 180/601 (29%), Gaps = 188/601 (31%)
Query: 142 RFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKY-DLVCKVFDTMRRRNVVAWNTIVSW 200
+FV L Y +S + E + Y + D + + NV
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--------- 131
Query: 201 YVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGS-EY 259
R ++ + R L + +RP+ NV ++ G+ LGS +
Sbjct: 132 ----SR-LQPYLKLRQAL-LELRPAK----NV--------------LIDGV---LGSGKT 164
Query: 260 VNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQ 319
VA Y DF KIF W + +E ++ +
Sbjct: 165 W----VALDVCLSYKVQCKMDF--KIF----------WLNL-KNCNSPETVLEMLQKLLY 207
Query: 320 VLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSW 379
++ + D + L S EL + Y +N L +VL +V
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--EN--CL--LVL-----LNV--Q 254
Query: 380 N-TMISAF--------------VQNGLD-DEGLMLVYEMQKQGFMIDSVTVTALLSAASN 423
N +AF V + L + + D V +LL +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKYLD 312
Query: 424 LRNQDVGKQTH----------AYLLRHGI-HFEGMESYLIDMYAKSGLIKTA-------- 464
R QD+ ++ A +R G+ ++ + D + +I+++
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD--KLTTIIESSLNVLEPAE 370
Query: 465 -RQ------IFEKND--SGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVT 515
R+ +F + W +I + ++ ++E + ++
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVI--KSDVMVVVNKLHK-YSLVEKQPKESTIS 427
Query: 516 IASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP 575
I S+ +E LH S++D Y+ + ++
Sbjct: 428 IPSIY--LELKVKLENEYALH---------------RSIVDHYNIP--KTFDSDDLIPPY 468
Query: 576 EKNSVTYTTMILGYGQH----GMSERALSLFRSM---------KGCGIEPDAITFVAVLS 622
Y +G+ H ER ++LFR + K I D+ + A S
Sbjct: 469 LDQ---YFYSHIGH--HLKNIEHPER-MTLFRMVFLDFRFLEQK---IRHDSTAWNASGS 519
Query: 623 ACSYAGLVDEGLQIFDLMQQ--EYK--IQPSTEHYCCVADMLGRVGKVVEAYE-FVKELG 677
I + +QQ YK I + Y + L V A F+ ++
Sbjct: 520 -------------ILNTLQQLKFYKPYICDNDPKY----ERL------VNAILDFLPKIE 556
Query: 678 E 678
E
Sbjct: 557 E 557
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-07
Identities = 78/508 (15%), Positives = 150/508 (29%), Gaps = 161/508 (31%)
Query: 23 QLPQIHSLSPPIPKLKTP------TIRSRLSKICQEGRPH---------------LARQL 61
Q ++++ + K +R L ++ RP +A +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL----RPAKNVLIDGVLGSGKTWVALDV 170
Query: 62 FDSITR----PTTVIW----------------NTIIIGFVCN---------NLPYEAILL 92
S + W ++ N N+ +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 93 YSQMK---KSSPYTSC----DNYTYSSVLKA----C---AETRNLRIGKAVHCHFIRCFS 138
++++ KS PY +C N + A C TR ++ +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL--------- 281
Query: 139 NPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDL----------VCKVFDTMRR 188
+ + L+ +S L+ + + + LKY++ DL + R
Sbjct: 282 -SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSIIAESIR 338
Query: 189 RNVVAWNTIVSW-YVKTERYVEAVRQFRMMLRMG-IRPSTISFVNVFPA--------LSS 238
+ W+ W +V ++ + +L R VFP LS
Sbjct: 339 DGLATWDN---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSL 394
Query: 239 L-GDYKSADV--------VYGLLVKLGSE---YVNDLFVASSA------------IFMYA 274
+ D +DV Y L+ K E + +++ + Y
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 275 ELGCF---DFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDV 331
F D D + + IG +++N E + LF +VF D
Sbjct: 455 IPKTFDSDDLIPPYLDQ-------YFYSHIGHHLKNIEHPERMTLF-------RMVFLDF 500
Query: 332 TFL--------SALSAVSQLQELDLGQQLHAY---IIKN---FVALPVIVLNAVIERDVV 377
FL +A +A + L+ QQL Y I N + L +L+ + + +
Sbjct: 501 RFLEQKIRHDSTAWNASGSI--LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 378 SWNTMISAFVQNGLDDEGLMLVYEMQKQ 405
+ + ++ L E + E KQ
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFEEAHKQ 586
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.7 bits (135), Expect = 3e-08
Identities = 20/214 (9%), Positives = 59/214 (27%), Gaps = 10/214 (4%)
Query: 553 SLIDMYSKSGVINYAANVF-------AKIPEKNSVTYTTMILGYGQHGMSERALSLFRSM 605
+ + + A ++ K Y ++LG+ + G + + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 606 KGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGK 665
K G+ PD +++ A L ++ + ++ + R
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 666 VVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725
+ ++ + + +++ V KL L
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNT--SKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH 309
Query: 726 SNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWI 759
+ + +V+K +E ++ +
Sbjct: 310 MELASRVCV-VSVEKPTLPSKEVKHARKTLKTLR 342
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 2e-07
Identities = 30/292 (10%), Positives = 76/292 (26%), Gaps = 52/292 (17%)
Query: 451 LIDMYAKSGLIKTARQIFEKNDSGDR-----DQATWNAMIAGYTQNGLLEEAFVAFRQML 505
+ + A + + + +NA++ G+ + G +E +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 506 EHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVIN 565
+ +TP++++ A+ L +I L+Q M +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDA-------GTIERCLEQ----------MSQEG---- 231
Query: 566 YAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACS 625
+ ++ ++ + + + + + P + +L
Sbjct: 232 ---------LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282
Query: 626 YAGLVDEGLQIFDLMQQ---EYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNV 682
++ ++ ++ Q E V V + E +E
Sbjct: 283 AKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVC---------VVSVEKPTLPSKEVKH 333
Query: 683 LEIWGSLLGSCRLHGHSELAEVVA--KKLLEMDTRNSMPGYHVLLSNIYAEE 732
L R L + K LE + + L + E
Sbjct: 334 ARKTLKTL---RDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDERE 382
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 6/88 (6%)
Query: 240 GDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE---RNTEV 296
G S +L ++ S+ + L+ + F + G ++ A +F ++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLA---FNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
Query: 297 WNTMIGGYVQNNHPVEAIELFVQVLELD 324
+ + AI + +D
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAVMD 85
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 813 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.46 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.43 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.43 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.39 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.36 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.3 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.25 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.17 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.17 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.15 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.07 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.04 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.04 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.02 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.97 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.96 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.95 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.92 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.89 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.89 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.89 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.87 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.81 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.78 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.74 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.7 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.7 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.7 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.69 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.63 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.62 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.62 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.62 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.58 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.58 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.52 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.52 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.5 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.46 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.45 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.45 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.45 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.44 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.44 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.44 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.43 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.41 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.4 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.4 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.4 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.39 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.39 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.37 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.33 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.33 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.32 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.29 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.29 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.25 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.25 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.24 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.23 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.23 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.19 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.19 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.19 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.18 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.16 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.15 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.13 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.13 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.12 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.1 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.09 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.06 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.06 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.04 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.03 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.0 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.99 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.95 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.91 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.83 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.82 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.76 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.75 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.74 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.62 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.59 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.52 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.45 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.4 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.39 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.37 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.31 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.25 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.08 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.04 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.03 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.86 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.82 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.73 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.73 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.5 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.33 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.22 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.06 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.96 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.83 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.81 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.75 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.67 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.36 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.2 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.02 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.51 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.42 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.36 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.35 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.25 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.09 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.0 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.69 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.63 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.53 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.38 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.29 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.22 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.02 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.74 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.51 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.48 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.8 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.49 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.48 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.36 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.18 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.63 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 82.44 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 82.34 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.48 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=372.78 Aligned_cols=500 Identities=10% Similarity=0.008 Sum_probs=343.8
Q ss_pred hhc-CCcchHHHhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHH
Q 046631 50 CQE-GRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKA 128 (813)
Q Consensus 50 ~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 128 (813)
+.. |.+..++..|+.++.+++..|+.++..+.+.|++++|+.+|++|... .|+..++..++.+|.+.|+++.|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI----TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh----CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 344 77888888999888889999999999999999999999999999864 4577899999999999999999999
Q ss_pred HHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccC-CC------------------
Q 046631 129 VHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMR-RR------------------ 189 (813)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~-~~------------------ 189 (813)
+|+.+... .++..+++.++.+|.++ |++++|.++|+++. ..
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKL------------------YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL 198 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHT------------------TCHHHHHHHHCSSCTTC----------CCCSSCCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHH------------------hhHHHHHHHHhccCCccccccccccccccccccch
Confidence 99987644 67889999999999999 99999999999544 33
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHhhCCCChhHH--HHH-HHHHHHhCCCCCCcHHH
Q 046631 190 NVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPST-ISFVNVFPALSSLGDYKSA--DVV-YGLLVKLGSEYVNDLFV 265 (813)
Q Consensus 190 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a--~~~-~~~~~~~~~~~~~~~~~ 265 (813)
+..+|+.++.+|.+.|++++|+++|++|.+. .|+. ..+..+...+...+..+.+ ..+ +..+...+.. ....+
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~ 274 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA--FLRSL 274 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH--HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH--HHHHH
Confidence 4779999999999999999999999999885 3543 3455454444333322211 111 3444444433 45566
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhccc
Q 046631 266 ASSAIFMYAELGCFDFARKIFDNCLE--RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQL 343 (813)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 343 (813)
++.++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|++++|+.+|++.+...
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------- 335 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID------------------- 335 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-------------------
Confidence 77778888888999999999988877 688888888888888888888888884433321
Q ss_pred CcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 046631 344 QELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASN 423 (813)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 423 (813)
+.+..+|+.++.+|.+.|++++|..+++++.+.. +.+..++..
T Consensus 336 -----------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~------- 378 (597)
T 2xpi_A 336 -----------------------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLA------- 378 (597)
T ss_dssp -----------------------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHH-------
T ss_pred -----------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHH-------
Confidence 2356667777777777788777777777776431 112222222
Q ss_pred CCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHH
Q 046631 424 LRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFR 502 (813)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~ 502 (813)
++.+|.+.|++++|.++|+++....| +..+|+.++.+|.+.|++++|+++|+
T Consensus 379 ---------------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 379 ---------------------------VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp ---------------------------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ---------------------------HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22333333333333333333221122 33344444444444444444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHH
Q 046631 503 QMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTY 582 (813)
Q Consensus 503 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 582 (813)
++.+.+ ..+..+|
T Consensus 432 ~~~~~~-------------------------------------------------------------------~~~~~~~ 444 (597)
T 2xpi_A 432 TAARLF-------------------------------------------------------------------QGTHLPY 444 (597)
T ss_dssp HHHHTT-------------------------------------------------------------------TTCSHHH
T ss_pred HHHHhC-------------------------------------------------------------------ccchHHH
Confidence 443321 1245566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCCC--hhHHHHHH
Q 046631 583 TTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEY---KIQPS--TEHYCCVA 657 (813)
Q Consensus 583 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~ 657 (813)
+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 666777777777777777777777642 3356677777777777777777777777776542 55676 67888888
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
.+|.+.|++++|.++++++ ...|+...+|..++.+|...|++++|...++++++++|++ +..+..++++|.
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~ 595 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE--IMASDLLKRALE 595 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHh
Confidence 8888888888888888886 3456556689999999999999999999999999999998 888888888774
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=364.67 Aligned_cols=496 Identities=9% Similarity=-0.033 Sum_probs=383.1
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLV 253 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 253 (813)
|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|..+|+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (597)
T 2xpi_A 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKED 144 (597)
T ss_dssp ---------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 7778888889999989999999999999999999999999999985 57888999999999999999999999999886
Q ss_pred HhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhH
Q 046631 254 KLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTF 333 (813)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~ 333 (813)
... ++..+++.++.+|.++|++++|.++|+++...+... .++.+.+.. ..+
T Consensus 145 ~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~------------~~~-------- 195 (597)
T 2xpi_A 145 LYN----RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLMQ------------DGG-------- 195 (597)
T ss_dssp GGG----TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC------------CSS--------
T ss_pred ccc----cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----ccccccccc------------ccc--------
Confidence 543 789999999999999999999999999654333100 000000000 000
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCC-Hh
Q 046631 334 LSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMID-SV 412 (813)
Q Consensus 334 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~ 412 (813)
.+.+..+|+.++.+|.+.|++++|+++|++|.+.+ |+ ..
T Consensus 196 --------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~ 235 (597)
T 2xpi_A 196 --------------------------------------IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYE 235 (597)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred --------------------------------------cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhH
Confidence 12234556666666666666666666666666542 32 22
Q ss_pred HHHHHHHHHhcCCChHHHH--HH-HHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHH
Q 046631 413 TVTALLSAASNLRNQDVGK--QT-HAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGY 488 (813)
Q Consensus 413 t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 488 (813)
.+..+...+...+..+... .+ +..+...+.... .+++.++.+|.+.|++++|.++|+++....++..+|+.++.+|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 3333322222221111110 00 222222233223 3445567888899999999999999886557999999999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046631 489 TQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAA 568 (813)
Q Consensus 489 ~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 568 (813)
.+.|++++|+.+|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999865 3467789999999999999999999999998653 457889999999999999999999
Q ss_pred HHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC
Q 046631 569 NVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK 645 (813)
Q Consensus 569 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 645 (813)
++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 470 (597)
T 2xpi_A 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-- 470 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 9999876 3478899999999999999999999999999863 457789999999999999999999999999865
Q ss_pred CCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhC-------cCCCh-HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 646 IQP-STEHYCCVADMLGRVGKVVEAYEFVKELG-------EEGNV-LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 646 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.| +..+|..++.+|.+.|++++|+++++++. ..|+. ..+|..++.+|.+.|++++|+..++++++.+|++
T Consensus 471 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 471 -FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred -CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 45 58999999999999999999999999982 25553 4599999999999999999999999999999998
Q ss_pred CCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 717 SMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 717 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+..+..++.+|.+.|++++|.+.++++.+.
T Consensus 550 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 550 --ANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999964
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-25 Score=232.47 Aligned_cols=375 Identities=14% Similarity=0.090 Sum_probs=245.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhCCCCCCh-hhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchH
Q 046631 301 IGGYVQNNHPVEAIELFVQVLELDEIVFDD-VTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSW 379 (813)
Q Consensus 301 i~~~~~~g~~~~A~~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (813)
...+.+.|++++|+..+.+..... |+. ..+..+...+...|+++.|...+....+. .+.+..+|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~------------~p~~~~~~ 70 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ------------NPLLAEAY 70 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CCCchHHH
Confidence 345566777777777774444432 322 23333344445555555555555555442 12234455
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhc
Q 046631 380 NTMISAFVQNGLDDEGLMLVYEMQKQGFMID-SVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKS 458 (813)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (813)
..+...|.+.|++++|+..|+++.+. .|+ ..+|..+..++...|+++.|...+..+++..+....+
T Consensus 71 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------- 137 (388)
T 1w3b_A 71 SNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV----------- 137 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHH-----------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-----------
Confidence 55555555556666666555555543 232 2344444444444444444444444444443333333
Q ss_pred CCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHH
Q 046631 459 GLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGF 538 (813)
Q Consensus 459 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 538 (813)
+..+...+...|++++|...|+++.+.. +-+..++..+...+...|++++|...++.
T Consensus 138 ----------------------~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 138 ----------------------RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp ----------------------HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444455555555555544431 11233444444445555555555555554
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CH
Q 046631 539 SIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--E-KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DA 614 (813)
Q Consensus 539 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 614 (813)
+.+.. +.+...+..+...+...|++++|...|++.. . .+..+|..+...|...|++++|++.|+++.+. .| +.
T Consensus 195 al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 271 (388)
T 1w3b_A 195 AVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFP 271 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCH
Confidence 44432 1234566777778888888888888887665 2 36788888999999999999999999999984 44 45
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
.++..+...+.+.|++++|...|+++.+. .| +..++..++.++.+.|++++|.+.++++ ...|+...+|..++.+
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 67888888999999999999999999865 45 5888999999999999999999999987 4456666689999999
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
+.+.|++++|...+++++++.|+. +..+..++.++.+.|+
T Consensus 349 ~~~~g~~~~A~~~~~~a~~~~p~~--~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 349 LQQQGKLQEALMHYKEAIRISPTF--ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCC--HHHHHhHHHHHHHccC
Confidence 999999999999999999999988 8888889888877663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-25 Score=233.60 Aligned_cols=354 Identities=17% Similarity=0.159 Sum_probs=311.5
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCC
Q 046631 382 MISAFVQNGLDDEGLMLVYEMQKQGFMIDS-VTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGL 460 (813)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (813)
+...+.+.|++++|++.++++.+. .|+. ..+..+...+...|+++.+...+...++..+.....+..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 345678899999999999998876 4544 4556666778899999999999999999887666889999999999999
Q ss_pred HHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCChHHHHHHHHH
Q 046631 461 IKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNV-VTIASVLPACNPMGNIELGKQLHGF 538 (813)
Q Consensus 461 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 538 (813)
+++|...|+++....| +..+|..+..++.+.|++++|+..|+++.+. .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999776667 5568999999999999999999999999985 4554 4566777888899999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H
Q 046631 539 SIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--E-KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-A 614 (813)
Q Consensus 539 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 614 (813)
+.+.. +.+..++..+...|.+.|++++|...|+++. . .+...|..+...+...|++++|+..|++..+ ..|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCH
Confidence 98864 3357789999999999999999999999886 3 3678899999999999999999999999998 4554 6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
.++..+...+...|++++|...|+++.+. .|+ ..+|..++.++.+.|++++|++.++++ ...|+...+|..++..
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 68889999999999999999999999854 675 888999999999999999999999987 4556666799999999
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+...|++++|...++++++..|++ +..+..++.+|.+.|++++|.+.++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTC--HHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999998 89999999999999999999999999984
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-27 Score=250.43 Aligned_cols=185 Identities=12% Similarity=0.128 Sum_probs=172.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC---------hHHHHHHHHHHHHcCCCCch
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN---------IELGKQLHGFSIRYLLDQNV 548 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 548 (813)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888899999999999999999999999999999999999999987654 68899999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIP----EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC 624 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 624 (813)
.+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999987 5799999999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRV 663 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 663 (813)
++.|++++|.+++++|.+. ++.|+..+|+.++..++..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999988 9999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=242.49 Aligned_cols=196 Identities=12% Similarity=0.112 Sum_probs=165.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCC
Q 046631 296 VWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERD 375 (813)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (813)
.++.+|.+|++.|++++|+++| +.|...|+.||..||+++|.+|++.+....+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf-~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------------------------- 80 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLY-DEARRNGVQLSQYHYNVLLYVCSLAEAATES-------------------------- 80 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHH-HHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHH-HHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------------------------
Confidence 4677777788888888888887 7777777777777777777777665543221
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMY 455 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (813)
.+.+.+++|.++|++|.+.|+.||..||+++|.+|++.|+++.|.++++.|.+.|+
T Consensus 81 -----------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~------------- 136 (501)
T 4g26_A 81 -----------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI------------- 136 (501)
T ss_dssp -----------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-------------
T ss_pred -----------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------
Confidence 12345688999999999999999999999988888888888888888887777776
Q ss_pred HhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHH
Q 046631 456 AKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQL 535 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 535 (813)
.||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++
T Consensus 137 -------------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~l 197 (501)
T 4g26_A 137 -------------------QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 197 (501)
T ss_dssp -------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhc
Q 046631 536 HGFSIRYLLDQNVFVGTSLIDMYSKS 561 (813)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~li~~~~~~ 561 (813)
+++|.+.|..|+..+|+.++..|+..
T Consensus 198 l~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 198 LQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999988764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-21 Score=209.67 Aligned_cols=340 Identities=12% Similarity=0.069 Sum_probs=255.0
Q ss_pred CCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHH
Q 046631 373 ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLI 452 (813)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 452 (813)
+.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.++....++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3456778889999999999999999999988752 345677777778888888888888888888777665556666777
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC
Q 046631 453 DMYAKSGLIKTARQIFEKNDSGDRDQ----ATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN 528 (813)
Q Consensus 453 ~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 528 (813)
..|.+.|++++|...|+++....|+. ..|..++..+...+ +..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 77777777777777777766555533 44444433311100 1111222334455
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 046631 529 IELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSM 605 (813)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (813)
+++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..++..|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555554432 2355667788888888888888888888776 347888999999999999999999999999
Q ss_pred HhCCCCCCHH-HHHHH------------HHHHhccCcHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCCHH
Q 046631 606 KGCGIEPDAI-TFVAV------------LSACSYAGLVDEGLQIFDLMQQEYKIQPS-----TEHYCCVADMLGRVGKVV 667 (813)
Q Consensus 606 ~~~g~~p~~~-~~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~ 667 (813)
.+ ..|+.. .+..+ ...|.+.|++++|..+|+++.+. .|+ ..++..++.++.+.|+++
T Consensus 238 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 87 455544 34333 77899999999999999999865 565 458899999999999999
Q ss_pred HHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHH------------HHHHhcC-
Q 046631 668 EAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLS------------NIYAEEG- 733 (813)
Q Consensus 668 ~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~------------~~~~~~g- 733 (813)
+|++.++++ ...|+...+|..++.+|...|++++|...++++++++|++ +..+..++ +.|...|
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND--QQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC--HHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch--HHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999996 5567666799999999999999999999999999999998 88998888 4455556
Q ss_pred ----CcHHHHHHHHH
Q 046631 734 ----NWENVDKVRKE 744 (813)
Q Consensus 734 ----~~~~A~~~~~~ 744 (813)
+.+++.+.+++
T Consensus 391 ~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRK 405 (450)
T ss_dssp STTCCTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 55566777765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=216.55 Aligned_cols=364 Identities=10% Similarity=-0.040 Sum_probs=307.0
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMY 455 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (813)
...|......+.+.|++++|+..|+++.+.. |+..++..+..++...|+++.|...++.+++.++....++..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3456677888999999999999999999874 78999999999999999999999999999998876668888899999
Q ss_pred HhcCCHHHHHHHHhhcCCCCC-C---------------------------------------------------------
Q 046631 456 AKSGLIKTARQIFEKNDSGDR-D--------------------------------------------------------- 477 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~-~--------------------------------------------------------- 477 (813)
.+.|++++|...|+++....| +
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999987643332 1
Q ss_pred ----------------------hhhHHHHHHHHHh---CCChHHHHHHHHHHHH-----CCCCC--------CHHHHHHH
Q 046631 478 ----------------------QATWNAMIAGYTQ---NGLLEEAFVAFRQMLE-----HNVTP--------NVVTIASV 519 (813)
Q Consensus 478 ----------------------~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~~~~p--------~~~t~~~l 519 (813)
...+......+.. .|++++|+..|+++.. ..-.| +...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 2223333333443 8999999999999988 32122 34567778
Q ss_pred HHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChH
Q 046631 520 LPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSE 596 (813)
Q Consensus 520 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 596 (813)
...+...|+++.|..+++.+.+.... ...+..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999987644 88899999999999999999999998763 36789999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHH
Q 046631 597 RALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 597 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
+|+..++++.+.. +.+...+..+...+...|++++|..+++++.+. .| +...+..++.+|.+.|++++|...+++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999853 335668888999999999999999999999865 45 478899999999999999999999988
Q ss_pred hC-cCCCh------HHHHHHHHHHHHH---hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 676 LG-EEGNV------LEIWGSLLGSCRL---HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 676 ~~-~~~~~------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
+. ..|.. ..+|..++..+.. .|++++|...++++++..|++ +..+..++.+|.+.|++++|.+.++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS--EQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 62 12222 2289999999999 999999999999999999998 899999999999999999999999999
Q ss_pred HHCC
Q 046631 746 RERG 749 (813)
Q Consensus 746 ~~~~ 749 (813)
.+..
T Consensus 476 ~~~~ 479 (514)
T 2gw1_A 476 ADLA 479 (514)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-21 Score=213.69 Aligned_cols=262 Identities=11% Similarity=-0.038 Sum_probs=212.2
Q ss_pred cCCHHHHHHHHhhcCC-----C--C-------C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046631 458 SGLIKTARQIFEKNDS-----G--D-------R-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPA 522 (813)
Q Consensus 458 ~g~~~~A~~~~~~~~~-----~--~-------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 522 (813)
.|++++|...|+++.. . . | +...|..+...+...|++++|+..|+++.+.. |+...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 6777777777776543 2 1 1 34567778888888899999999988888764 346777788888
Q ss_pred hccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHH
Q 046631 523 CNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERAL 599 (813)
Q Consensus 523 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 599 (813)
+...|+++.|...++.+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|+
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888887754 3356678889999999999999999998875 346788999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhc---cCCHHHHHHH
Q 046631 600 SLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGR---VGKVVEAYEF 672 (813)
Q Consensus 600 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~ 672 (813)
..++++.+.. +.+..++..+...+...|++++|...++++.+...-.++ ...+..++.++.+ .|++++|.+.
T Consensus 359 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 359 TLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 9999998852 335668888899999999999999999998865222222 3489999999999 9999999999
Q ss_pred HHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 673 VKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 673 ~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
++++ ...|+...+|..+...+...|++++|...++++++++|++ +..+..+
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~ 489 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM--EEKLQAI 489 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH--HHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc--HHHHHHH
Confidence 9987 4556666699999999999999999999999999999997 6665554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-19 Score=200.73 Aligned_cols=218 Identities=12% Similarity=-0.013 Sum_probs=107.4
Q ss_pred HhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHH
Q 046631 522 ACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERA 598 (813)
Q Consensus 522 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 598 (813)
.+...|+++.|...+..+.+.. |+...+..+...|...|++++|.+.|+++. ..+..+|..+...|...|++++|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3344444444444444444432 223344444444555555555555554443 12344555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC
Q 046631 599 LSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG 677 (813)
Q Consensus 599 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 677 (813)
+..|+++.+.. +.+...+..+...+...|++++|..+++++.+. .|+ ...+..++.++.+.|++++|.+.++++.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555532 112334555555555555555555555555533 232 4455555555555555555555555531
Q ss_pred ----cCCC---hHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHH
Q 046631 678 ----EEGN---VLEIWGSLLGSCRLH----------GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 678 ----~~~~---~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 740 (813)
..+. ....+..+...+... |++++|...++++++.+|++ +..+..++.+|.+.|++++|.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS--EQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHHHH
Confidence 1110 010233334444444 55555555555555555555 5555555555555566666555
Q ss_pred HHHHHHH
Q 046631 741 VRKEMRE 747 (813)
Q Consensus 741 ~~~~m~~ 747 (813)
.++++.+
T Consensus 484 ~~~~al~ 490 (537)
T 3fp2_A 484 LFEDSAI 490 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-20 Score=198.86 Aligned_cols=308 Identities=13% Similarity=0.003 Sum_probs=230.6
Q ss_pred CHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHH
Q 046631 410 DSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGY 488 (813)
Q Consensus 410 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~ 488 (813)
+...+..+...+...|+++.|..++..+++..+....++..+...|...|++++|...|+++....| +...|..+...|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3445666666666666666666666666665544445556666666666666666666666544344 455666666666
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 046631 489 TQNGLLEEAFVAFRQMLEHNVTPNV----VTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVI 564 (813)
Q Consensus 489 ~~~~~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 564 (813)
.+.|++++|...|+++.+. .|+. ..+..+...+. ...+..+...|.+.|++
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE-----------------------MQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcCCH
Confidence 6666666666666666653 2332 22222222210 01133445668899999
Q ss_pred HHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046631 565 NYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 565 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
++|...|+++. ..+...+..++..|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+++.
T Consensus 160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999876 3478899999999999999999999999998852 4457789999999999999999999999998
Q ss_pred HhcCCCCC-hhHHHHH------------HHHHhccCCHHHHHHHHHHh-CcCCCh----HHHHHHHHHHHHHhCCHHHHH
Q 046631 642 QEYKIQPS-TEHYCCV------------ADMLGRVGKVVEAYEFVKEL-GEEGNV----LEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 642 ~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~a~ 703 (813)
+. .|+ ...+..+ +..+.+.|++++|++.++++ ...|+. ...|..++..+.+.|++++|+
T Consensus 239 ~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 239 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred Hh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 54 665 5555544 89999999999999999987 334443 237888999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 704 VVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..++++++..|++ +..+..++.+|...|++++|...++++.+.
T Consensus 316 ~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 316 RVCSEVLQMEPDN--VNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999998 899999999999999999999999999864
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-19 Score=201.70 Aligned_cols=450 Identities=12% Similarity=0.018 Sum_probs=305.4
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 046631 191 VVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAI 270 (813)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 270 (813)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+.+..+. +..++..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHH
Confidence 3456777788888899999999998888743 235567777888888888888888888888887754 667777777
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHH
Q 046631 271 FMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQ 350 (813)
Q Consensus 271 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 350 (813)
..|...|++++|...|+.+ ..+....+..+..+...+...+|+..+++.+.... +.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~---~~-------------------- 156 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE---GR-------------------- 156 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC----------------------------
T ss_pred HHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCc---cc--------------------
Confidence 7888888888888777633 22222222233344444445566666633322110 00
Q ss_pred HHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHH
Q 046631 351 QLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVG 430 (813)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 430 (813)
.+........+..+....+.+.+...+..... ..+....+...+.......
T Consensus 157 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~----- 207 (537)
T 3fp2_A 157 ----------------------GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSAT----- 207 (537)
T ss_dssp ------------------------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCS-----
T ss_pred ----------------------cccccchHhHHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhh-----
Confidence 00011112223333344444444333322211 1111111111111100000
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCC--------hhhHHHHHHHHHhCCChHHHHHHHH
Q 046631 431 KQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRD--------QATWNAMIAGYTQNGLLEEAFVAFR 502 (813)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~A~~~~~ 502 (813)
........|++++|..+|+++....|+ ..+|..+...+...|++++|+..|+
T Consensus 208 --------------------~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 208 --------------------DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 011112235677888888877665664 2346677788889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCH
Q 046631 503 QMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNS 579 (813)
Q Consensus 503 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~ 579 (813)
++... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+.
T Consensus 268 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 268 ESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 99885 4667788888899999999999999999988765 3367789999999999999999999999876 3367
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCC 655 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 655 (813)
..|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+...-.++ ...+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 899999999999999999999999999853 334568888899999999999999999998765211111 233555
Q ss_pred HHHHHhcc----------CCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHH
Q 046631 656 VADMLGRV----------GKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHV 723 (813)
Q Consensus 656 l~~~~~~~----------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~ 723 (813)
++.++.+. |++++|...++++ ...|+...+|..++..+...|++++|...+++++++.|.. +....
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~ 500 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM--DEKLQ 500 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C--HHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--HHHHH
Confidence 66778888 9999999999987 4567767799999999999999999999999999999987 55433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-16 Score=175.64 Aligned_cols=317 Identities=12% Similarity=0.078 Sum_probs=227.7
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcC
Q 046631 380 NTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSG 459 (813)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 459 (813)
.-+...+...|.+++|..+|++.. -.......++. ..++++.|.++.+.+ ..+.++..+..++.+.|
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCC
Confidence 345666777788888888887742 11111222222 556677777776643 33477778888888888
Q ss_pred CHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHH
Q 046631 460 LIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFS 539 (813)
Q Consensus 460 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 539 (813)
++++|++.|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+.
T Consensus 1120 ~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred CHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 888888888664 356677778888888888888888888776643 33333334777788887777544442
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 046631 540 IRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVA 619 (813)
Q Consensus 540 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 619 (813)
+ .++...+..+.+.|...|++++|..+|..+ ..|..+...|.+.|++++|++.+++. .+..+|..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 1 334455667888888888888888888874 47888888888888888888888876 34578888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh--
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH-- 696 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~-- 696 (813)
+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.. ..++.....|.-|...+.+.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 88888888888888776542 3345677788999999999999999999876 44455555787777777665
Q ss_pred CCHHHHHHHHHHHhcCCC-----CCCCchhHHHHHHHHHhcCCcHHHHHH
Q 046631 697 GHSELAEVVAKKLLEMDT-----RNSMPGYHVLLSNIYAEEGNWENVDKV 741 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~p-----~~~~~~~~~~l~~~~~~~g~~~~A~~~ 741 (813)
++..++.+.|..-+.+.| .+ +..+.-+..+|.+.|+|+.|...
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~--~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQ--AHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHH--HHHHHHHHHHHHhcccHHHHHHH
Confidence 467778888887777655 44 56677788899999999998853
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-15 Score=170.79 Aligned_cols=644 Identities=14% Similarity=0.077 Sum_probs=386.3
Q ss_pred hHHHHHhhc-CCcchHHHhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCC
Q 046631 44 SRLSKICQE-GRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRN 122 (813)
Q Consensus 44 ~~l~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~ 122 (813)
...+.-+++ |..+.+...-.+..- .--|..++..+.+. +++.|.++...+.+.. + .......+...+...+.
T Consensus 486 ~Kvi~~l~~~gq~~ki~~Y~~~~~~--~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~~--~--p~~d~~~ivd~f~~~~~ 558 (1630)
T 1xi4_A 486 NKVIQCFAETGQVQKIVLYAKKVGY--TPDWIFLLRNVMRI-SPDQGQQFAQMLVQDE--E--PLADITQIVDVFMEYNL 558 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHhccCC--CccHHHHHHHHhhc-ChHHHHHHHHHHhcCC--C--CccCHHHHHHHHHhcCc
Confidence 455555666 999998888665321 23477888888765 6888999888887764 2 34567889999999999
Q ss_pred chHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhh-hhccc-----------ccCCCChhHHHHHHcccCC--
Q 046631 123 LRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMV-GLKYV-----------EVDYSKYDLVCKVFDTMRR-- 188 (813)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~-----------~~~~g~~~~a~~~~~~~~~-- 188 (813)
+.++..++-+..+.+-+.+....+.|+.+-... .+--|+.+ +.... .-+.|-+..|.+.++.+..
T Consensus 559 iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~-~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dik 637 (1630)
T 1xi4_A 559 IQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMH-APQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIK 637 (1630)
T ss_pred HHHHHHHHHHHHhCCChhhhhHhHHHHHHhhcc-chhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHH
Confidence 999999998888876444444545554443221 11111111 00000 0123778888888876542
Q ss_pred C-----CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhh-------------HHHHHHHhhCCCChhHHHHHHH
Q 046631 189 R-----NVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTIS-------------FVNVFPALSSLGDYKSADVVYG 250 (813)
Q Consensus 189 ~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------------~~~ll~~~~~~g~~~~a~~~~~ 250 (813)
+ ....=..++. |...=..+.+++.++.|...+++-|... -..+|..+-+.+.++.-.-++.
T Consensus 638 R~~~~~~~~~~~~l~~-~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~ 716 (1630)
T 1xi4_A 638 RAVVHTHLLNPEWLVN-YFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLG 716 (1630)
T ss_pred HHhhccCcCCHHHHHH-HHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHH
Confidence 1 1112222333 3333566888888888887554433222 2223333333333333333333
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCC---------------CCcc----------------h---
Q 046631 251 LLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE---------------RNTE----------------V--- 296 (813)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~----------------~--- 296 (813)
.++. .. .|+.+....|.+.++.|++.+.+++.++-.- +|.. .
T Consensus 717 siv~--~s--~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy 792 (1630)
T 1xi4_A 717 SIVN--FS--QDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 792 (1630)
T ss_pred hhcc--cc--CChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHH
Confidence 2222 22 6888999999999999999999988765311 1110 0
Q ss_pred ---HHHHHHHHHhCCCchHHHHHH---------------------------------HHH---------H--HhCCCCCC
Q 046631 297 ---WNTMIGGYVQNNHPVEAIELF---------------------------------VQV---------L--ELDEIVFD 329 (813)
Q Consensus 297 ---~~~li~~~~~~g~~~~A~~~~---------------------------------~~~---------m--~~~g~~p~ 329 (813)
....|..|++.-++..+-.+. ++. + +...-..+
T Consensus 793 ~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~~~ 872 (1630)
T 1xi4_A 793 RNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEE 872 (1630)
T ss_pred hcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 112344444332221111111 000 0 00112345
Q ss_pred hhhHHHHHHHhcccCcchHHH----------HHHHHHHH------------h-cccchhhh--hccC-------------
Q 046631 330 DVTFLSALSAVSQLQELDLGQ----------QLHAYIIK------------N-FVALPVIV--LNAV------------- 371 (813)
Q Consensus 330 ~~t~~~ll~~~~~~~~~~~a~----------~~~~~~~~------------~-~~~~~~~~--~~~~------------- 371 (813)
..+++++...+...++-.+.. -+-....+ | .+.+-+.+ .|++
T Consensus 873 ~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d 952 (1630)
T 1xi4_A 873 PATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKD 952 (1630)
T ss_pred HHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcC
Confidence 556666666555433221110 00000000 0 00000000 0000
Q ss_pred ----------------------------CCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCC--CCCHhHHHHHHHH-
Q 046631 372 ----------------------------IERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF--MIDSVTVTALLSA- 420 (813)
Q Consensus 372 ----------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~ll~~- 420 (813)
...|..--...+.+|...|.+.+|++++++..-.+- .-+...-+.++.+
T Consensus 953 ~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tA 1032 (1630)
T 1xi4_A 953 PELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTA 1032 (1630)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHH
Confidence 111222224456778889999999999999884321 0112222333332
Q ss_pred --------------------------HhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 046631 421 --------------------------ASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSG 474 (813)
Q Consensus 421 --------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 474 (813)
|...|.+++|..+|+... ..+. ++-..+-..+++++|.++.++..
T Consensus 1033 IkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~----~~~~---A~~VLie~i~nldrAiE~Aervn-- 1103 (1630)
T 1xi4_A 1033 IKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD----VNTS---AVQVLIEHIGNLDRAYEFAERCN-- 1103 (1630)
T ss_pred HHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC----CHHH---HHHHHHHHHhhHHHHHHHHHhcC--
Confidence 333444455555554431 0001 11111225556666666666553
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 046631 475 DRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSL 554 (813)
Q Consensus 475 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 554 (813)
+..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|+++++.+++...++.. ++..+.+.+
T Consensus 1104 --~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1104 --EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred --CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 3567888888889999999999888653 466677888888999999999999988877765 333344458
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGL 634 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 634 (813)
+.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.
T Consensus 1174 afaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 88888888888644443 3556677778888888899999999998884 37888888888999999998
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 635 QIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 635 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
+.+++. -+..+|..+..++...|++..|......+...++ .+..++..|.+.|.+++|+.+++..+.++|
T Consensus 1242 EaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~d---eLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1242 DGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD---ELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 888755 2567888888888888998888887765544333 455788889999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHhc--CCcHHHHHHHH
Q 046631 715 RNSMPGYHVLLSNIYAEE--GNWENVDKVRK 743 (813)
Q Consensus 715 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 743 (813)
.+ ...+.-|+.+|.+. ++..++.++|.
T Consensus 1312 aH--~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1312 AH--MGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hH--hHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 87 78887787777764 34444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-17 Score=174.36 Aligned_cols=327 Identities=13% Similarity=0.033 Sum_probs=226.5
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMY 455 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (813)
+..|..+...+...|++++|+..|+++.+. .+....++..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----------------------------------~p~~~~~~~~~a~~~ 47 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----------------------------------DPDNYIAYYRRATVF 47 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------------------------------CcccHHHHHHHHHHH
Confidence 344555556666666666666666665553 222223334455566
Q ss_pred HhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHH-HHHHHHHHhccCCChH
Q 046631 456 AKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTP---NVV-TIASVLPACNPMGNIE 530 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~-t~~~ll~~~~~~~~~~ 530 (813)
...|++++|...|++.....| +...|..+...|...|++++|+..|+++.+. .| +.. .+..+... .
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~ 118 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------D 118 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------H
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------H
Confidence 666666666666666544344 5567777777788888888888888877764 34 221 11111110 0
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 531 LGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 531 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
....+..+...+...|++++|.+.|+++. ..+...|..+...+...|++++|+..++++.+
T Consensus 119 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 182 (359)
T 3ieg_A 119 ----------------EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182 (359)
T ss_dssp ----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01123344567778888888888888765 34677888888888888999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHH------------HHHHHHhccCCHHHHHHHHH
Q 046631 608 CGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYC------------CVADMLGRVGKVVEAYEFVK 674 (813)
Q Consensus 608 ~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~ 674 (813)
.. +.+..++..+...+...|++++|...++++.+. .|+ ...+. .++..+.+.|++++|.+.++
T Consensus 183 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 258 (359)
T 3ieg_A 183 LK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258 (359)
T ss_dssp TC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 52 345667888888888889999999988888755 454 33332 33777889999999999998
Q ss_pred Hh-CcCCChH----HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 675 EL-GEEGNVL----EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 675 ~~-~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
++ ...|+.+ ..+..+...+...|++++|...++++++.+|++ +..+..++.+|...|++++|.+.++++.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~- 335 (359)
T 3ieg_A 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN--VNALKDRAEAYLIEEMYDEAIQDYEAAQEH- 335 (359)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 86 3344433 245567888999999999999999999999988 889999999999999999999999998843
Q ss_pred CccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 046631 750 LRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRN 794 (813)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 794 (813)
+|....+...+.++...+.+
T Consensus 336 -------------------------~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 336 -------------------------NENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHH
T ss_pred -------------------------CCCChHHHHHHHHHHHHHHH
Confidence 35555566666666655544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=175.11 Aligned_cols=280 Identities=13% Similarity=0.083 Sum_probs=197.5
Q ss_pred CCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHH
Q 046631 373 ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLI 452 (813)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 452 (813)
+.+..+|..+...+...|++++|+..|+++.+.. +-+...+ ..+.
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~----------------------------------~~l~ 78 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAAR----------------------------------LQRG 78 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH----------------------------------HHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHH----------------------------------HHHH
Confidence 3445566666677777777777777777666542 1122333 4456
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCC----ChhhHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 046631 453 DMYAKSGLIKTARQIFEKNDSGDR----DQATWNAM------------IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTI 516 (813)
Q Consensus 453 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~ 516 (813)
..|...|++++|...|++.....| +...+..+ ...+...|++++|+..|+++.+.. |
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~----- 151 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--V----- 151 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C-----
Confidence 666667777777777776654455 22233333 455666666666666666665532 2
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcC
Q 046631 517 ASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHG 593 (813)
Q Consensus 517 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 593 (813)
.+...+..+...|...|++++|...++++.+ .+..+|..+...|...|
T Consensus 152 -----------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 152 -----------------------------WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHT
T ss_pred -----------------------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 2334566667777777777777777776552 36778888888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHH-HHH------------HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-h----hHHHH
Q 046631 594 MSERALSLFRSMKGCGIEPDAI-TFV------------AVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-T----EHYCC 655 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~~p~~~-~~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~ 655 (813)
++++|+..+++..+. .|+.. .+. .+...+...|++++|...++++.+. .|+ . ..+..
T Consensus 203 ~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 203 DHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKER 277 (359)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHH
Confidence 888888888888874 34432 222 2356688999999999999999865 454 2 34667
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
++.++.+.|++++|++.+++. ...|+.+.+|..++..+...|++++|...++++++++|++ +.....+..++.
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~ 351 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND--QQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHH
Confidence 889999999999999999987 4467667799999999999999999999999999999998 777777766544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-17 Score=168.57 Aligned_cols=284 Identities=12% Similarity=0.002 Sum_probs=188.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCC
Q 046631 414 VTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNG 492 (813)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 492 (813)
+..+...+...|+++.|..+++.+.+..+........++..+...|++++|...|+++....| +...|..+...+...|
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG 104 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh
Confidence 333333333444444444444444443333333333344444444455555444444332233 3344444555555555
Q ss_pred -ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046631 493 -LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVF 571 (813)
Q Consensus 493 -~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (813)
++++|...|++..... | .+...+..+...|...|++++|.+.|
T Consensus 105 ~~~~~A~~~~~~a~~~~--~----------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 105 HKNEHARRYLSKATTLE--K----------------------------------TYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp SCHHHHHHHHHHHHTTC--T----------------------------------TCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC--C----------------------------------ccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4555555555544321 1 13445666777777777777777777
Q ss_pred hhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--
Q 046631 572 AKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKI-- 646 (813)
Q Consensus 572 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-- 646 (813)
+++. ..+...+..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+...-
T Consensus 149 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 7665 2345677778888888999999999999988853 334567888888899999999999999888765211
Q ss_pred -----CCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch
Q 046631 647 -----QPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG 720 (813)
Q Consensus 647 -----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 720 (813)
......+..++.+|.+.|++++|++.++++ ...|+...+|..+...+...|++++|...++++++++|++ +.
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 305 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD--TF 305 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC--HH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc--hH
Confidence 223678999999999999999999999886 4456666689999999999999999999999999999998 88
Q ss_pred hHHHHHHHH-HhcCCcH
Q 046631 721 YHVLLSNIY-AEEGNWE 736 (813)
Q Consensus 721 ~~~~l~~~~-~~~g~~~ 736 (813)
.+..++.++ ...|+.+
T Consensus 306 ~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 306 SVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhCchh
Confidence 899999888 4555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=164.67 Aligned_cols=264 Identities=10% Similarity=0.006 Sum_probs=213.5
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046631 476 RDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 476 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 555 (813)
.+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+.++|..+++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 345556666666777777777777777766643 2233344455566666777777777777766643 23566788888
Q ss_pred HHHHhcC-CHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 046631 556 DMYSKSG-VINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVD 631 (813)
Q Consensus 556 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~ 631 (813)
..|...| ++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998763 367889999999999999999999999999853 233566777888999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcC----------CChHHHHHHHHHHHHHhCCHH
Q 046631 632 EGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEE----------GNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~ 700 (813)
+|...++++. ...|+ ...+..++.++.+.|++++|...++++... +....+|..++..+...|+++
T Consensus 177 ~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998 44674 889999999999999999999999887321 333458999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 701 LAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 701 ~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+|...++++++..|++ +..+..++.+|.+.|++++|.+.++++.+
T Consensus 254 ~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQN--ASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTC--SHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccc--hHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999998 99999999999999999999999998774
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=158.98 Aligned_cols=271 Identities=10% Similarity=0.009 Sum_probs=198.5
Q ss_pred HHhcCCHHHHHHHHhhcCCCCCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHH
Q 046631 455 YAKSGLIKTARQIFEKNDSGDRDQ--ATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELG 532 (813)
Q Consensus 455 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 532 (813)
....|++..|+..++......|+. .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666666555434432 2334455666666666666655433 1234455566666666666666666
Q ss_pred HHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 046631 533 KQLHGFSIRYLLDQ-NVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE 611 (813)
Q Consensus 533 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 611 (813)
...++.+...+..| +...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 66666666655333 455667777889999999999999998 568889999999999999999999999999985 5
Q ss_pred CCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHH
Q 046631 612 PDAITF---VAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIW 686 (813)
Q Consensus 612 p~~~~~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 686 (813)
|+.... ..++..+...|++++|..+|+++.+. .| +...++.++.++.+.|++++|++.++++ ...|+.+++|
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 665322 12334445669999999999999976 45 5889999999999999999999999995 6778888899
Q ss_pred HHHHHHHHHhCCHHH-HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 046631 687 GSLLGSCRLHGHSEL-AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVR 742 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 742 (813)
..++..+...|+.++ +..+++++++++|++ +... +...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~--~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSH--PFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--HHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC--hHHH----HHHHHHHHHHHHHHHc
Confidence 999999999998865 678999999999998 5543 4555556666555433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-15 Score=159.54 Aligned_cols=266 Identities=13% Similarity=0.014 Sum_probs=198.7
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046631 449 SYLIDMYAK----SGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQ----NGLLEEAFVAFRQMLEHNVTPNVVTIASVL 520 (813)
Q Consensus 449 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll 520 (813)
..|..+|.. .+++++|.+.|++... ..+...+..+...|.. .+++++|+..|++..+.| +...+..+.
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 226 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAE-QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 334455554 5667777777766442 1356667777777776 677788888887777654 344455555
Q ss_pred HHhcc----CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHh
Q 046631 521 PACNP----MGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK----SGVINYAANVFAKIPE-KNSVTYTTMILGYGQ 591 (813)
Q Consensus 521 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 591 (813)
..+.. .++.++|..+++...+.| +...+..+..+|.. .++.++|.+.|++..+ .+..++..|...|..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 55543 677788888877777654 34556667777777 8899999999988764 467788888888888
Q ss_pred c-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc-
Q 046631 592 H-----GMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG---LVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR- 662 (813)
Q Consensus 592 ~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 662 (813)
. +++++|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .+...+..|+.+|..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g 376 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQG 376 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcC
Confidence 7 89999999999999865 4456667777776656 889999999998865 367888899999988
Q ss_pred ---cCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCC---CCCchhHHHHHHHHHh
Q 046631 663 ---VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTR---NSMPGYHVLLSNIYAE 731 (813)
Q Consensus 663 ---~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~~~l~~~~~~ 731 (813)
.+++++|.+++++....++.. ++..|...+.. .++.++|...++++.+.+|+ + +.....++.++..
T Consensus 377 ~g~~~~~~~A~~~~~~A~~~~~~~-a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~--~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 377 KGVKKDEQQAAIWMRKAAEQGLSA-AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT--ENRNITEKKLTAK 452 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH--HHHHHHHTTSCHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC--HHHHHHHHhcCHh
Confidence 899999999999987666554 89999999988 89999999999999999854 4 5566666655443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=162.55 Aligned_cols=280 Identities=13% Similarity=0.130 Sum_probs=128.1
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLV 253 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 253 (813)
|++++|.+.++++..|+ +|+.+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++...
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88999999999997664 999999999999999999999965 3677899999999999999999999988888
Q ss_pred HhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhH
Q 046631 254 KLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTF 333 (813)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~ 333 (813)
+.. +++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...| ..+ ..|
T Consensus 89 k~~----~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y-~~a---------~n~ 151 (449)
T 1b89_A 89 KKA----RESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLY-NNV---------SNF 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHH-HHT---------TCH
T ss_pred HhC----ccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHH-HHh---------hhH
Confidence 753 6788899999999999999999988864 67789999999999999999999999 543 478
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhH
Q 046631 334 LSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVT 413 (813)
Q Consensus 334 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 413 (813)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|+..|+++.|...... +...+.-
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-----------------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~ 209 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-----------------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADE 209 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-----------------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-----------------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhh
Confidence 88889999999999988887765 2577889999999999999988655543 2233333
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhc--CCHHHHHHHHhhcCCCCC------ChhhHHHHH
Q 046631 414 VTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKS--GLIKTARQIFEKNDSGDR------DQATWNAMI 485 (813)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~------~~~~~~~li 485 (813)
...++..|.+.|.++++..+++..+........+++.|.-.|++- +++.+..+.|..-....| +...|..+.
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 556788888888999988888888766643347777777777764 456666777664332222 456788888
Q ss_pred HHHHhCCChHHHHHH
Q 046631 486 AGYTQNGLLEEAFVA 500 (813)
Q Consensus 486 ~~~~~~~~~~~A~~~ 500 (813)
..|.+.++++.|...
T Consensus 290 ~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHhhchHHHHHHH
Confidence 888888888888764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-17 Score=165.74 Aligned_cols=409 Identities=13% Similarity=0.111 Sum_probs=194.9
Q ss_pred CCcchHHHhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHH
Q 046631 53 GRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCH 132 (813)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 132 (813)
|++++|.++++++..| .+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 17 ~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8899999999999665 49999999999999999999999653 2667999999999999999999999988
Q ss_pred HHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHH
Q 046631 133 FIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVR 212 (813)
Q Consensus 133 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (813)
.++. .+++.+.+.++.+|.++ |+++++.++++. |+..+|+.+...|...|++++|..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Kl------------------g~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKT------------------NRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp ------------------------------------------CHHHHTTTTTC---C----------------CTTTHHH
T ss_pred HHHh--CccchhHHHHHHHHHHh------------------CCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 8775 45578899999999999 999999988864 777899999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCC
Q 046631 213 QFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLER 292 (813)
Q Consensus 213 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 292 (813)
.|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .
T Consensus 144 ~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~ 205 (449)
T 1b89_A 144 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V 205 (449)
T ss_dssp HHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T
T ss_pred HHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-h
Confidence 99976 47999999999999999999999988 378999999999999999999988877755 4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCC
Q 046631 293 NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVI 372 (813)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 372 (813)
++.....++..|.+.|++++|+.+++..+....-.-..+|...++.+--+.+++.+..+.|..-+. .+.. + . .
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in-i~k~---~-~--~ 278 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN-IPKV---L-R--A 278 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC-HHHH---H-H--H
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc-CcHH---H-H--H
Confidence 444455789999999999999999977776664444455555555555566666666665542211 1000 0 0 0
Q ss_pred CCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHH
Q 046631 373 ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLI 452 (813)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 452 (813)
-.+...|.-+.-.|.+.++++.|... |.+. .|+...-..+.....+..+.+.-.+....-+...+ ...+-|+
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll 350 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLL 350 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHH
Confidence 02567899999999999999998774 4443 33444444445555666666655555444443222 2345566
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHH
Q 046631 453 DMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELG 532 (813)
Q Consensus 453 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 532 (813)
..+...=+...+.++|+..... |=+..|- . -.+..+...+-+.+.++.-. .-|..+...-|.+|-.-..+..|
T Consensus 351 ~~l~~~ld~~r~v~~~~~~~~l-~l~~~yl--~--~v~~~n~~~vnealn~l~ie--eed~~~lr~si~~~~nfd~~~l~ 423 (449)
T 1b89_A 351 MVLSPRLDHTRAVNYFSKVKQL-PLVKPYL--R--SVQNHNNKSVNESLNNLFIT--EEDYQALRTSIDAYDNFDNISLA 423 (449)
T ss_dssp HHHGGGCCHHHHHHHHHHTTCT-TTTHHHH--H--HHHTTCCHHHHHHHHHHHHH--TTCHHHHHHHHHHCCCSCHHHHH
T ss_pred HHHHhccCcHHHHHHHHHcCCc-HHHHHHH--H--HHHHhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHhcCcCHHHHH
Confidence 6666666667777777665421 1111111 1 11222333333333333221 23555555555555555444444
Q ss_pred HH
Q 046631 533 KQ 534 (813)
Q Consensus 533 ~~ 534 (813)
.+
T Consensus 424 ~~ 425 (449)
T 1b89_A 424 QR 425 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-14 Score=156.25 Aligned_cols=353 Identities=13% Similarity=0.034 Sum_probs=295.6
Q ss_pred CCcchHHHHHHHHHH----CCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCc
Q 046631 374 RDVVSWNTMISAFVQ----NGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASN----LRNQDVGKQTHAYLLRHGIHFE 445 (813)
Q Consensus 374 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 445 (813)
.+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.+.|...+....+.+. .
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~ 111 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL--P 111 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--H
Confidence 356677778888888 899999999999998875 45667777777777 8999999999999988762 2
Q ss_pred chHHHHHHHHHh----cCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046631 446 GMESYLIDMYAK----SGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQ----NGLLEEAFVAFRQMLEHNVTPNVVTIA 517 (813)
Q Consensus 446 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~~ 517 (813)
.....|..+|.. .+++++|...|++... .-+...+..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 555668888888 8899999999998653 2367788888888887 889999999999998875 566666
Q ss_pred HHHHHhcc----CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCHhHHHHHHHH
Q 046631 518 SVLPACNP----MGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK----SGVINYAANVFAKIPE-KNSVTYTTMILG 588 (813)
Q Consensus 518 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 588 (813)
.+...+.. .++.++|...+....+.| +...+..+..+|.. .+++++|.+.|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777766 899999999999998876 56678888888886 8999999999998764 477888888888
Q ss_pred HHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 046631 589 YGQ----HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYA-----GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADM 659 (813)
Q Consensus 589 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 659 (813)
|.. .++.++|+..|++..+.| +...+..+...+... ++.++|..++++..+. + +...+..++.+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 888 899999999999999864 455666777777776 8999999999998865 3 56788889999
Q ss_pred HhccC---CHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh-
Q 046631 660 LGRVG---KVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE- 731 (813)
Q Consensus 660 ~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~- 731 (813)
|.+.| ++++|++++++....++.. .+..|...|.. .++.++|...++++.+.+ + +..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~-a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~--~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKA-AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L--SAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHT
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C--HHHHHHHHHHHHcC
Confidence 98867 8999999999987766655 99999999998 899999999999999865 4 7788999999998
Q ss_pred ---cCCcHHHHHHHHHHHHCCC
Q 046631 732 ---EGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 732 ---~g~~~~A~~~~~~m~~~~~ 750 (813)
.++.++|...+++..+.+.
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998774
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-16 Score=166.21 Aligned_cols=284 Identities=11% Similarity=0.012 Sum_probs=208.4
Q ss_pred HHhcCCHHHHHH-HHhhcCCCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC
Q 046631 455 YAKSGLIKTARQ-IFEKNDSGDR-----DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN 528 (813)
Q Consensus 455 ~~~~g~~~~A~~-~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 528 (813)
+.-.|++++|.. .|++.....| +...+..+...|.+.|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334466667776 6665433333 23456677777777777777777777777653 3345566677777777777
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHH---------------HHHHHH
Q 046631 529 IELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTT---------------MILGYG 590 (813)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 590 (813)
+++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 777777777776654 23566777777778888888888888776652 2 2222211 133334
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCH
Q 046631 591 QHGMSERALSLFRSMKGCGIEPD---AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKV 666 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 666 (813)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++++.+. .|+ ...+..++.++.+.|++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCH
Confidence 889999999999999984 444 678899999999999999999999999865 564 88999999999999999
Q ss_pred HHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC---------CchhHHHHHHHHHhcCCcH
Q 046631 667 VEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS---------MPGYHVLLSNIYAEEGNWE 736 (813)
Q Consensus 667 ~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---------~~~~~~~l~~~~~~~g~~~ 736 (813)
++|++.++++ ...|+...+|..++.++...|++++|...+++++++.|++. .+..+..++.+|...|+++
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999999986 45666667999999999999999999999999999877641 1467889999999999999
Q ss_pred HHHHHHHHH
Q 046631 737 NVDKVRKEM 745 (813)
Q Consensus 737 ~A~~~~~~m 745 (813)
+|..++++.
T Consensus 348 ~A~~~~~~~ 356 (368)
T 1fch_A 348 AYGAADARD 356 (368)
T ss_dssp GHHHHHTTC
T ss_pred hHHHhHHHH
Confidence 999987643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-14 Score=158.91 Aligned_cols=211 Identities=14% Similarity=0.091 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhhCCC---C-CHhHHHHHHHHHHhc
Q 046631 531 LGKQLHGFSIRYLLDQNVFVGTSLIDMYSK-------SGVIN-------YAANVFAKIPE---K-NSVTYTTMILGYGQH 592 (813)
Q Consensus 531 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 592 (813)
.+..+++...... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4444555554431 2345556666666654 57766 78888887653 3 577888888888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHH-HhccCCHHH
Q 046631 593 GMSERALSLFRSMKGCGIEPDA--ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADM-LGRVGKVVE 668 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~ 668 (813)
|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|++..+ ..|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhH
Confidence 888888888888887 45543 4677777777788888888888888874 3443 3334333333 335788888
Q ss_pred HHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch----hHHHHHHHHHhcCCcHHHHHHHH
Q 046631 669 AYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG----YHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 669 A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
|..+|++. ...|+.+.+|..++..+.+.|+.++|..++++++...|.+ +. .+...+......|+.+.+..+.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~--~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP--PEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC--GGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888865 4456666688888888888888888888888888877654 43 55555666777788888888888
Q ss_pred HHHHCC
Q 046631 744 EMRERG 749 (813)
Q Consensus 744 ~m~~~~ 749 (813)
++.+.-
T Consensus 488 r~~~~~ 493 (530)
T 2ooe_A 488 RRFTAF 493 (530)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 877654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-14 Score=156.10 Aligned_cols=336 Identities=11% Similarity=0.040 Sum_probs=222.3
Q ss_pred CCcchHHHHHHHH-HHCCCcHHHHH----HHHHHHH-CCCCCC-HhHHHHHHHHHhc---------CCChHHHHHHHHHH
Q 046631 374 RDVVSWNTMISAF-VQNGLDDEGLM----LVYEMQK-QGFMID-SVTVTALLSAASN---------LRNQDVGKQTHAYL 437 (813)
Q Consensus 374 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~pd-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~ 437 (813)
|+...|...+... ...|+.++|.+ +|+.... .|..|+ ...|...+..... .|+++.+..+|+..
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666777776533 45677777665 6666554 355543 4556665555443 57788888999888
Q ss_pred HHhCCCCc--chHHHHHHHH-------------HhcCCHHHHHHHHhh-------cCC----CCCC--------hhhHHH
Q 046631 438 LRHGIHFE--GMESYLIDMY-------------AKSGLIKTARQIFEK-------NDS----GDRD--------QATWNA 483 (813)
Q Consensus 438 ~~~~~~~~--~~~~~l~~~~-------------~~~g~~~~A~~~~~~-------~~~----~~~~--------~~~~~~ 483 (813)
++. +... .++....... .+.+++..|..+++. +.. ..|+ ...|..
T Consensus 157 l~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 157 CVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp TTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred Hhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 883 2221 2332222211 123456677766654 211 1222 245665
Q ss_pred HHHHHHhC----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-------CCChH-------HHHHHHHHHHH
Q 046631 484 MIAGYTQN----GLL----EEAFVAFRQMLEHNVTPNVVTIASVLPACNP-------MGNIE-------LGKQLHGFSIR 541 (813)
Q Consensus 484 li~~~~~~----~~~----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~ 541 (813)
.+...... ++. .+++.+|++..... +-+...|......+.. .|+++ .|..+++...+
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 55443332 222 37778888887752 3345566666666654 68876 78888888776
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CH-hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHH
Q 046631 542 YLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NS-VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AIT 616 (813)
Q Consensus 542 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~ 616 (813)
.-.+.+...+..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|++++|..+|++..+. .|+ ...
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~ 392 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHV 392 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHH
Confidence 3334467788888888888999999999998776 33 33 47888888888888899999999998874 332 233
Q ss_pred HHHHHHH-HhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcC-CC----hHHHHHHH
Q 046631 617 FVAVLSA-CSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEE-GN----VLEIWGSL 689 (813)
Q Consensus 617 ~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~~l 689 (813)
|...+.. +...|+.++|..+|++..+. .|+ ...+..+++.+.+.|+.++|..+|++.... |. ...+|...
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3322222 33578899999999888865 464 788888888888899999999998887332 22 22378888
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 690 LGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 690 ~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+.....+|+.+.+..+.+++.+..|++
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 888888899999999999888888764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=165.82 Aligned_cols=263 Identities=10% Similarity=-0.037 Sum_probs=203.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44457777777788888888888888777653 3355677777777777888888888887777653 234667888888
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-C----------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 046631 557 MYSKSGVINYAANVFAKIPE--K-N----------SVTYTTMILGYGQHGMSERALSLFRSMKGCGIE-PDAITFVAVLS 622 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~ 622 (813)
.|.+.|++++|...|+++.+ | + ...+..+...+...|++++|+.+|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888887763 2 1 223445688899999999999999999985322 15778999999
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
.+...|++++|...++++.+. .| +..++..++.+|.+.|++++|++.++++ ...|+...+|..++.++...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999865 56 4889999999999999999999999987 456776779999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCC----------chhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 701 LAEVVAKKLLEMDTRNSM----------PGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 701 ~a~~~~~~~~~~~p~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
+|...+++++++.|+... ...+..++.++...|+.+.+....++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998877311 56788899999999999988887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-15 Score=164.68 Aligned_cols=368 Identities=12% Similarity=-0.015 Sum_probs=241.4
Q ss_pred CCcchHHHHHHHHHHCCCcHHHHHHHHHHHHC-----C--CCC-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCC---
Q 046631 374 RDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQ-----G--FMI-DSVTVTALLSAASNLRNQDVGKQTHAYLLRHGI--- 442 (813)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 442 (813)
.....||.|...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++.+.+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987542 1 123 346888999999999999999999988876421
Q ss_pred ---CCc--chHHHHHHHHHhc--CCHHHHHHHHhhcCCCCC-ChhhHHHHHHH---HHhCCChHHHHHHHHHHHHCCCCC
Q 046631 443 ---HFE--GMESYLIDMYAKS--GLIKTARQIFEKNDSGDR-DQATWNAMIAG---YTQNGLLEEAFVAFRQMLEHNVTP 511 (813)
Q Consensus 443 ---~~~--~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~-~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~~~p 511 (813)
.+. .++..+..++.+. +++++|+..|++.....| +...+..+... +...++.++|++.|++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 111 3444455455544 579999999998766667 44555555444 445688889999999988753 22
Q ss_pred CHHHHHHHHHHh----ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHH
Q 046631 512 NVVTIASVLPAC----NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTT 584 (813)
Q Consensus 512 ~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ 584 (813)
+...+..+...+ ...++.++|...++...... +.+..++..+...|.+.|++++|...|++.. .| +..+|..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 444454444333 34567788999998887764 3456778889999999999999999999876 23 5667777
Q ss_pred HHHHHHhc-------------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC
Q 046631 585 MILGYGQH-------------------GMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK 645 (813)
Q Consensus 585 li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 645 (813)
+...|... +.+++|+..+++..+.. +.+..++..+...+...|++++|...|++..+.
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-- 363 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-- 363 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 76665432 33567888888877742 223346777888889999999999999988754
Q ss_pred CCCCh----hHHHHHHHH-HhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc
Q 046631 646 IQPST----EHYCCVADM-LGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP 719 (813)
Q Consensus 646 ~~p~~----~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 719 (813)
.|+. ..+..++.. +...|++++|++.+++. ...|... .+. +....+..++++.++.+|.+ +
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~-~~~---------~~~~~l~~~~~~~l~~~p~~--~ 430 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR-EKE---------KMKDKLQKIAKMRLSKNGAD--S 430 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH-HHH---------HHHHHHHHHHHHHHHHCC-C--T
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH-HHH---------HHHHHHHHHHHHHHHhCCCC--H
Confidence 4432 223344433 34678999999988875 4455544 221 12344566778888889998 9
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEE
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWI 759 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 759 (813)
.++..||.+|...|++++|.+.+++..+.+...+...+|+
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp THHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999999999998876544444453
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=8.7e-16 Score=161.33 Aligned_cols=301 Identities=12% Similarity=0.002 Sum_probs=184.3
Q ss_pred HHHHCCCcHHHHH-HHHHHHHCCC-CC--CHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCC
Q 046631 385 AFVQNGLDDEGLM-LVYEMQKQGF-MI--DSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGL 460 (813)
Q Consensus 385 ~~~~~g~~~~A~~-~~~~m~~~g~-~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (813)
.+...|++++|+. .|++...... .| +...+..+...+...|+++.|...+..+++..+....++..+...|.+.|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3444566666666 5554433210 01 233455555555566666666666666655544433455555555556666
Q ss_pred HHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHH
Q 046631 461 IKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFS 539 (813)
Q Consensus 461 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 539 (813)
+++|...|++.....| +..+|..+...|...|++++|+..|+++.... |+........ +....
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~------~~~~~-------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA------EEGAG-------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH------HHHhh--------
Confidence 6666665555433333 44455555555555666666666665555532 2211100000 00000
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046631 540 IRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--EK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA 614 (813)
Q Consensus 540 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 614 (813)
...+ ...+..+...+ ..|++++|...|+++. .| +..+|..+...|...|++++|+..|+++.+.. +.+.
T Consensus 178 ---~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 178 ---GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ---hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 0000 00111223333 8889999999998876 23 47889999999999999999999999998842 3346
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCCh----------
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNV---------- 682 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~---------- 682 (813)
.++..+...+...|++++|...++++.+. .|+ ...+..++.+|.+.|++++|...++++. ..|+.
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 68888999999999999999999999865 564 8889999999999999999999998862 22222
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 046631 683 -LEIWGSLLGSCRLHGHSELAEVVAKKLL 710 (813)
Q Consensus 683 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 710 (813)
..+|..+..++...|+.++|..++++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 5689999999999999999988877544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-15 Score=148.36 Aligned_cols=248 Identities=10% Similarity=0.034 Sum_probs=205.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPNV--VTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSG 562 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 562 (813)
|.-....|++..|+..+++... ..|+. .....+.+++...|+++.|...++. .-.|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678999999999887654 34543 3556678899999999999876543 24567778889999999999
Q ss_pred CHHHHHHHHhhCC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046631 563 VINYAANVFAKIP----EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 563 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 637 (813)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 577788888999999999999999988 456778888999999999999999999
Q ss_pred HHHHHhcCCCCChh---HHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 046631 638 DLMQQEYKIQPSTE---HYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 638 ~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 713 (813)
+++.+. .|+.. ....++..+...|++++|+.+|+++ ...|+.+.+|+.++.++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999866 47632 1223445666779999999999998 4467777799999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCcHH-HHHHHHHHHHCC
Q 046631 714 TRNSMPGYHVLLSNIYAEEGNWEN-VDKVRKEMRERG 749 (813)
Q Consensus 714 p~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 749 (813)
|++ +..+..++.++...|++++ +.++++++.+..
T Consensus 231 p~~--~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGH--PETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999 9999999999999999976 578999988543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=156.26 Aligned_cols=256 Identities=10% Similarity=-0.016 Sum_probs=179.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMG 527 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 527 (813)
..+...+...|++++|...|+++....| +...|..+...+...|++++|...|+++.+.. +.
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---------------- 87 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK---------------- 87 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC----------------
Confidence 3444555555555555555555433233 34455555555555555555555555555432 12
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHH--------------HH-HH
Q 046631 528 NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTM--------------IL-GY 589 (813)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~ 589 (813)
+...+..+...|...|++++|.+.|+++.+ | +...+..+ .. .+
T Consensus 88 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 88 -------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148 (327)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCT
T ss_pred -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHH
Confidence 333444455555555555555555554431 1 11122221 22 36
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 668 (813)
...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+. .|+ ...+..++.++.+.|++++
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHH
Confidence 77889999999999998853 335678888899999999999999999999865 464 8889999999999999999
Q ss_pred HHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC------------CCCchhHHHHHHHHHhcCCc
Q 046631 669 AYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR------------NSMPGYHVLLSNIYAEEGNW 735 (813)
Q Consensus 669 A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~~~l~~~~~~~g~~ 735 (813)
|.+.++++ ...|+...+|..+...+...|++++|...++++++..|. . +..+..++.+|.+.|++
T Consensus 225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT--RSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHH--HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcC--HHHHHHHHHHHHhcCCH
Confidence 99999986 455666669999999999999999999999999999988 5 77888999999999999
Q ss_pred HHHHHHHHHHH
Q 046631 736 ENVDKVRKEMR 746 (813)
Q Consensus 736 ~~A~~~~~~m~ 746 (813)
++|..++++..
T Consensus 303 ~~A~~~~~~~l 313 (327)
T 3cv0_A 303 DLVELTYAQNV 313 (327)
T ss_dssp HHHHHHTTCCS
T ss_pred HHHHHHHHHHH
Confidence 99999886543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-15 Score=156.11 Aligned_cols=233 Identities=8% Similarity=-0.050 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHH
Q 046631 512 NVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILG 588 (813)
Q Consensus 512 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 588 (813)
+...+..+...+...|++++|..+++.+.+.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788888999999999999999998875 3467889999999999999999999999876 3468899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 046631 589 YGQHGMSERALSLFRSMKGCGIEPDAI-----------TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVA 657 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 657 (813)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+++++.+...-.++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999883 44432 233457788999999999999999997622222588999999
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcH
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWE 736 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~ 736 (813)
.+|.+.|++++|++.++++ ...|+...+|..++.++...|++++|+..+++++++.|++ +..+..++.+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF--IRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHCCCHH
Confidence 9999999999999999987 4567667799999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHHCC
Q 046631 737 NVDKVRKEMRERG 749 (813)
Q Consensus 737 ~A~~~~~~m~~~~ 749 (813)
+|...++++.+..
T Consensus 299 ~A~~~~~~al~~~ 311 (365)
T 4eqf_A 299 EAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.9e-14 Score=151.11 Aligned_cols=378 Identities=12% Similarity=0.000 Sum_probs=241.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCC
Q 046631 294 TEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIE 373 (813)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 373 (813)
+..||.|...+...|++++|++.|++.+.. +.... + . ....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~-----------------------------~~~~~-~-~--------~~~~ 91 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL-----------------------------IQQEH-A-D--------QAEI 91 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HHHHS-G-G--------GCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------------------HHhcC-c-c--------ccch
Confidence 456777777777788888888777443321 11000 0 0 0012
Q ss_pred CCcchHHHHHHHHHHCCCcHHHHHHHHHHHHC-----C-CCC-CHhHHHHHHHHHh--cCCChHHHHHHHHHHHHhCCCC
Q 046631 374 RDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQ-----G-FMI-DSVTVTALLSAAS--NLRNQDVGKQTHAYLLRHGIHF 444 (813)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-d~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~ 444 (813)
....+|+.+...|...|++++|...+++..+. + ..+ ...++.....++. ..++++.|...|+.+++..+..
T Consensus 92 ~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~ 171 (472)
T 4g1t_A 92 RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171 (472)
T ss_dssp TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Confidence 34578999999999999999999999987652 1 112 2345555444443 4567999999999999998776
Q ss_pred cchHHHHHHH---HHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHH
Q 046631 445 EGMESYLIDM---YAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQ----NGLLEEAFVAFRQMLEHNVTPNVVTI 516 (813)
Q Consensus 445 ~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~ 516 (813)
......+... +...++.++|++.|++.....| +...+..+...+.. .+++++|...+++..... +.+...+
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 6555544444 4456778889888887654455 55666666555544 467889999999988753 4456678
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-------------------CCHHHHHHHHhhCC--
Q 046631 517 ASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKS-------------------GVINYAANVFAKIP-- 575 (813)
Q Consensus 517 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~~~-- 575 (813)
..+...+...|+++.|...+....+.. +.+..++..+...|... +..+.|...|++..
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 888999999999999999999988764 23455666666665432 23566777777654
Q ss_pred -CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHHhcCCCCChh
Q 046631 576 -EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI--TFVAVLS-ACSYAGLVDEGLQIFDLMQQEYKIQPSTE 651 (813)
Q Consensus 576 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 651 (813)
..+..+|..+...|...|++++|++.|++.++....+... .+..+.. ...+.|+.++|+..|++.. .+.|+..
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~ 406 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSR 406 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccH
Confidence 3456788999999999999999999999999854333222 2333332 3457899999999999988 4567643
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH-hCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKE-LGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLS 726 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~ 726 (813)
..... .+.+.+++++ +..+|+.+.+|..|+..+...|++++|++.++++++++|.+ |.....+|
T Consensus 407 ~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~--p~a~~~~G 471 (472)
T 4g1t_A 407 EKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI--PSASSWNG 471 (472)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CcHhhcCC
Confidence 32222 2333444443 35567777799999999999999999999999999999988 77665554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-14 Score=145.02 Aligned_cols=277 Identities=10% Similarity=-0.017 Sum_probs=174.7
Q ss_pred CcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 046631 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDM 454 (813)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 454 (813)
+...|..+...+...|++++|..+|+++.+.. +.+..++.. +...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~----------------------------------l~~~ 64 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRS----------------------------------LGLT 64 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH----------------------------------HHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHH----------------------------------HHHH
Confidence 45567777788888888888888888877653 223344444 4444
Q ss_pred HHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCChHHH
Q 046631 455 YAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV-TIASVLPACNPMGNIELG 532 (813)
Q Consensus 455 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a 532 (813)
|...|++++|...|++.....| +...|..+...|...|++++|+..|+++.... |+.. .+..+...+
T Consensus 65 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~--------- 133 (327)
T 3cv0_A 65 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD--------- 133 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC-----------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH---------
Confidence 5555555555555555433334 55677777778888888888888888877642 3221 111110000
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHH--HHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 533 KQLHGFSIRYLLDQNVFVGTSLID--MYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
++......+.. .+...|++++|.+.++++. ..+...+..+...|...|++++|+..++++.+
T Consensus 134 -------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 134 -------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE 200 (327)
T ss_dssp -------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00001111211 2555666666666666554 23566777777777777888888888887776
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCC----
Q 046631 608 CGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGN---- 681 (813)
Q Consensus 608 ~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---- 681 (813)
.. +.+..++..+...+...|++++|...++++.+. .| +...+..++.+|.+.|++++|.+.++++ ...|.
T Consensus 201 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 276 (327)
T 3cv0_A 201 LR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-
T ss_pred hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccc
Confidence 42 234557777777788888888888888877754 45 3677778888888888888888887775 23333
Q ss_pred --------hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 682 --------VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 682 --------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
...+|..+..++...|+.++|..+++++++..|
T Consensus 277 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 277 TGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp ----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 455788888888888888888888776655433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-16 Score=172.24 Aligned_cols=150 Identities=11% Similarity=0.014 Sum_probs=108.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLE---HNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSL 554 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 554 (813)
..+||+||++|++.|+.++|.++|.+|.+ .|+.||.+||++||.+|++.|++++|.++|++|.+.|+.||..+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35788888999998988888888877654 477888888888888888888888888888888877777766666555
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGM-SERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEG 633 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a 633 (813)
|++++ +.|+ .++|.++|++|.+.|+.||.+||++++.++.+.+ .
T Consensus 207 I~glc-------------------------------K~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----v 251 (1134)
T 3spa_A 207 LQCMG-------------------------------RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----V 251 (1134)
T ss_dssp HHHHH-------------------------------HHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----H
T ss_pred HHHHH-------------------------------hCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----H
Confidence 55544 4444 3677888899999999999999998887665543 3
Q ss_pred HHHHHHHHHhcCCCCC------hhHHHHHHHHHhccC
Q 046631 634 LQIFDLMQQEYKIQPS------TEHYCCVADMLGRVG 664 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g 664 (813)
++.++++.. ++.|+ ..+...|.+.|.+.+
T Consensus 252 L~~Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 252 LKAVHKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHGGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 344444432 34443 445556778888766
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-14 Score=136.84 Aligned_cols=194 Identities=14% Similarity=0.079 Sum_probs=158.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 046631 545 DQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAV 620 (813)
Q Consensus 545 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 620 (813)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45667788888999999999999999998763 36889999999999999999999999999984 554 5578888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHH
Q 046631 621 LSACSYA-----------GLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWG 687 (813)
Q Consensus 621 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 687 (813)
...+... |++++|+..+++..+. .|+ ...+..++.+|...|++++|+..+++. ... +.+.+|.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 8899999 9999999999999855 785 889999999999999999999999987 333 5556999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
.++.++...|++++|+..++++++++|++ +..+..++.++...|++++|.+.+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKD--LDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999 9999999999999999999999987654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.9e-14 Score=139.45 Aligned_cols=219 Identities=10% Similarity=0.023 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046631 479 ATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMY 558 (813)
Q Consensus 479 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (813)
..|..+...+...|++++|+..|++..+.. .+... +..+..+|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-----------------------------------~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITY-----------------------------------LNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHH-----------------------------------HHHHHHHH
Confidence 355666666667777777777776666654 34444 44555555
Q ss_pred HhcCCHHHHHHHHhhCCC--C----C----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 046631 559 SKSGVINYAANVFAKIPE--K----N----SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG 628 (813)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 628 (813)
...|++++|.+.|++..+ | + ..+|..+...|...|++++|+..|+++.+ +.|+. ..+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHh
Confidence 555555555555555442 1 1 56788888888999999999999999888 45653 3456678
Q ss_pred cHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHH
Q 046631 629 LVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVA 706 (813)
Q Consensus 629 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 706 (813)
++++|...++.+.. ..|+ ...+..++.++...|++++|++.++++ ...|..+.+|..++..+...|++++|...+
T Consensus 120 ~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 120 NAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999998874 3564 788899999999999999999999987 455666668999999999999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 707 KKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 707 ~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+++++..|++ +..+..++.+|.+.|++++|...+++..+.
T Consensus 197 ~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 197 NKAIEKDPNF--VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999998 899999999999999999999999998864
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-16 Score=169.52 Aligned_cols=125 Identities=12% Similarity=0.151 Sum_probs=111.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP-------EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVA 619 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 619 (813)
-..+||+||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45589999999999999999999997653 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCc-HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 046631 620 VLSACSYAGL-VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEF 672 (813)
Q Consensus 620 ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 672 (813)
+|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999997 57899999999999 9999999999998877776555554444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-13 Score=134.98 Aligned_cols=236 Identities=13% Similarity=0.030 Sum_probs=172.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHh
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNV--TPNVVTIASVLPAC 523 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~ 523 (813)
..+..+...+...|++++|...|++......+...|..+...|...|++++|+..|++..+... .++...
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------- 77 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV-------- 77 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH--------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH--------
Confidence 4567788999999999999999998543336778999999999999999999999999876421 112100
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhcCChHHHHHH
Q 046631 524 NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--KNSVTYTTMILGYGQHGMSERALSL 601 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 601 (813)
...++..+...|.+.|++++|...|+++.+ ++ ...+...|++++|+..
T Consensus 78 -----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 78 -----------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKK 127 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHH
Confidence 023345555566666666666666665542 23 2345566778888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-Cc
Q 046631 602 FRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GE 678 (813)
Q Consensus 602 ~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 678 (813)
++++... .|+ ...+..+...+...|++++|...++++.+. .| +...+..++.+|.+.|++++|+..++++ ..
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888773 443 346777777888888888888888888754 45 4778888888888888999888888876 44
Q ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC------CCCCCchhHHHHH
Q 046631 679 EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMD------TRNSMPGYHVLLS 726 (813)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~~~l~ 726 (813)
.|+.+.+|..+...+...|++++|...+++++++. |.+ ......+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~--~~~~~~l~ 254 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA--REIDQLYY 254 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH--HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCch--HHHHHHHH
Confidence 56666688888889999999999999999988888 665 55444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-13 Score=132.83 Aligned_cols=240 Identities=10% Similarity=-0.078 Sum_probs=166.7
Q ss_pred CChHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046631 492 GLLEEAFVAFRQMLEHNVT--P-NVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAA 568 (813)
Q Consensus 492 ~~~~~A~~~~~~m~~~~~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 568 (813)
|++++|+..|+++.+.... | +...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 3444444444444443110 1 12334444444444555555555554444432 224556777778888888888888
Q ss_pred HHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC
Q 046631 569 NVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK 645 (813)
Q Consensus 569 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 645 (813)
+.|+++. ..+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...+++....
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-- 173 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-- 173 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 8888766 23678899999999999999999999999998 4566665555666667789999999999888765
Q ss_pred CCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCC-----hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch
Q 046631 646 IQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGN-----VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG 720 (813)
Q Consensus 646 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 720 (813)
.|+......++..+...++.++|++.+++...... ...+|..++..+...|++++|...++++++.+|.+ ..
T Consensus 174 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 250 (275)
T 1xnf_A 174 -SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FV 250 (275)
T ss_dssp -SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CH
T ss_pred -CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HH
Confidence 34323333477888888899999999988743322 24589999999999999999999999999999976 43
Q ss_pred hHHHHHHHHHhcCCcHHHHHHH
Q 046631 721 YHVLLSNIYAEEGNWENVDKVR 742 (813)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~ 742 (813)
. .+.++...|++++|.+.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 356788888999888766
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=9e-13 Score=129.83 Aligned_cols=198 Identities=10% Similarity=-0.051 Sum_probs=166.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC 624 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 624 (813)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556777788888888888888888765 3467788889999999999999999999988853 33566788888889
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHH
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a 702 (813)
...|++++|..+++++.+. +..|+ ...+..++.+|.+.|++++|.+.++++ ...|....+|..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999988752 35664 778888999999999999999999886 44555566889999999999999999
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 703 EVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 703 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
...++++++..|.+ ...+..++.+|...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQN--ARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999988 8888899999999999999999999998653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-13 Score=132.93 Aligned_cols=244 Identities=13% Similarity=0.022 Sum_probs=154.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMG 527 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 527 (813)
......+...|++++|...|++.....| +...|..+...|...|++++|+..|++..+....|+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------- 72 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA-------------- 72 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC--------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH--------------
Confidence 3455666677777777777776554444 3446666667777777777777777776663211111
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 046631 528 NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRS 604 (813)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 604 (813)
....+..+...|...|++++|.+.|++.. ..+..+|..+...|...|++++|+..|++
T Consensus 73 -------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 73 -------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred -------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 11234555556666666666666666554 23456677777777777777777777777
Q ss_pred HHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCC---HHHHHHHHHHhC--
Q 046631 605 MKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGK---VVEAYEFVKELG-- 677 (813)
Q Consensus 605 m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-- 677 (813)
..+. .|+ ...+..+...+...+++++|...|+++.+. .|+ ...+..++.++...|+ +++|...++++.
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 7663 333 334555552444455788888888777754 454 6667777777777776 666666666541
Q ss_pred --cCCC-----hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhc
Q 046631 678 --EEGN-----VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE 732 (813)
Q Consensus 678 --~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 732 (813)
..|+ ...+|..+...+...|++++|...++++++++|++ +.....++.+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN--KKAIDGLKMKLEHH 268 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHC------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH--HHHHHHhhhhhccc
Confidence 1232 22478889999999999999999999999999998 77776665554433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-12 Score=135.66 Aligned_cols=244 Identities=14% Similarity=0.024 Sum_probs=187.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC-hHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN-IELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
...|+.+...+.+.|++++|+..|++.+... +-+...|..+..++...|+ +++|...++.+++... .+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 3456667777777777777777777777642 2234456666666666775 7777777777766542 25667888888
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhc-cCcHH
Q 046631 557 MYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSY-AGLVD 631 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~-~g~~~ 631 (813)
+|.+.|++++|+..|+++. ..+..+|..+..++...|++++|+..|+++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 8889999999999998876 347889999999999999999999999999984 45 45678888888887 56656
Q ss_pred HH-----HHHHHHHHHhcCCCCC-hhHHHHHHHHHhccC--CHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhC------
Q 046631 632 EG-----LQIFDLMQQEYKIQPS-TEHYCCVADMLGRVG--KVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHG------ 697 (813)
Q Consensus 632 ~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 697 (813)
+| +..+++.++. .|+ ...|..+..+|.+.| ++++|++.++++...|+...++..++..+.+.|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 5778888754 675 788889999999888 689999999888667777768888998888874
Q ss_pred ---CHHHHHHHHHHH-hcCCCCCCCchhHHHHHHHHH
Q 046631 698 ---HSELAEVVAKKL-LEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 698 ---~~~~a~~~~~~~-~~~~p~~~~~~~~~~l~~~~~ 730 (813)
..++|+.+++++ ++++|.. ..+|..++..+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r--~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIR--KEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHH
Confidence 258899999999 8999988 788877766554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-11 Score=123.84 Aligned_cols=224 Identities=11% Similarity=-0.029 Sum_probs=166.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
+..++..+...|...|++++|+..|++..+.+ +.. .+..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~-----------------------------------a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENS-----------------------------------GCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHH-----------------------------------HHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHH-----------------------------------HHHHHHH
Confidence 55667777777777788888888887776622 222 3344445
Q ss_pred HHHh----cCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-
Q 046631 557 MYSK----SGVINYAANVFAKIPE-KNSVTYTTMILGYGQ----HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY- 626 (813)
Q Consensus 557 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~- 626 (813)
.|.. .|++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 5555 6666666666665542 356677777777777 788888888888888764 56677777777777
Q ss_pred ---cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----
Q 046631 627 ---AGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR----VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL---- 695 (813)
Q Consensus 627 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~---- 695 (813)
.+++++|..+|++..+. + +...+..++.+|.. .+++++|++.+++....++.. .+..+...+..
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSP-GCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTCSS
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHcCCCC
Confidence 88888888888888764 3 56677778888877 888888888888876555544 78888888888
Q ss_pred hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHHHCCC
Q 046631 696 HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE----EGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 696 ~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 750 (813)
.+++++|...++++++.+| +..+..++.+|.. .|++++|.+.+++..+.|.
T Consensus 199 ~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8899999999998888755 4667788888888 8899999999988887664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-12 Score=124.05 Aligned_cols=198 Identities=14% Similarity=0.026 Sum_probs=164.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA 623 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 623 (813)
+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34567777888888899999988888765 3467788889999999999999999999988843 3356678888888
Q ss_pred Hhcc-CcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHH
Q 046631 624 CSYA-GLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 624 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
+... |++++|..+++++.+. +..|+ ...+..++.++...|++++|++.++++ ...|....+|..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 9999999999998862 34554 778888999999999999999999886 445655668899999999999999
Q ss_pred HHHHHHHHHhcCCC-CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 701 LAEVVAKKLLEMDT-RNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 701 ~a~~~~~~~~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+|...++++++..| .+ +..+..++.++...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQ--ADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999998 77 778888888899999999999999988754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-11 Score=123.23 Aligned_cols=224 Identities=16% Similarity=0.005 Sum_probs=170.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQ----NGLLEEAFVAFRQMLEHNVTPNVVTIASVLP 521 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 521 (813)
.....+...|...|++++|...|++... ..+...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~--- 79 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL--- 79 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH---
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH---
Confidence 4566788899999999999999998763 2366788889999999 999999999999988764 3444433
Q ss_pred HhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHh----c
Q 046631 522 ACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK----SGVINYAANVFAKIPE-KNSVTYTTMILGYGQ----H 592 (813)
Q Consensus 522 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~ 592 (813)
+...|.. .+++++|.+.|++..+ .+..++..+...|.. .
T Consensus 80 --------------------------------lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 80 --------------------------------LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp --------------------------------HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred --------------------------------HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcc
Confidence 3444444 5555555555554442 355667777777777 7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cC
Q 046631 593 GMSERALSLFRSMKGCGIEPDAITFVAVLSACSY----AGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR----VG 664 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 664 (813)
+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..++.+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCc
Confidence 88888888888888765 45566677777776 88899999998888764 2 46777888888888 89
Q ss_pred CHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCC
Q 046631 665 KVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 665 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~ 716 (813)
++++|++.+++....++.. ++..+...+.. .++.++|...++++++.+|.+
T Consensus 201 ~~~~A~~~~~~a~~~~~~~-a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELENGG-GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCCHH-HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 9999999998876555544 88888888888 889999999999999888764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-12 Score=132.05 Aligned_cols=224 Identities=13% Similarity=0.016 Sum_probs=192.7
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhCC---CCCHhHHHHHHHHH
Q 046631 514 VTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGV-INYAANVFAKIP---EKNSVTYTTMILGY 589 (813)
Q Consensus 514 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 589 (813)
..|..+...+...|++++|...++.+++.. +-+..+|+.+..+|.+.|+ +++|+..|+++. ..+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356667777888999999999999999865 3367788999999999997 999999999887 34788999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhc-cCCH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGR-VGKV 666 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~ 666 (813)
...|++++|+..|+++++ +.| +...|..+..++...|++++|+..++++++. .|+ ...|+.++.+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 455 4568889999999999999999999999965 675 8999999999999 6666
Q ss_pred HHH-----HHHHHHh-CcCCChHHHHHHHHHHHHHhC--CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC-----
Q 046631 667 VEA-----YEFVKEL-GEEGNVLEIWGSLLGSCRLHG--HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG----- 733 (813)
Q Consensus 667 ~~A-----~~~~~~~-~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g----- 733 (813)
++| ++.+++. ...|+...+|..+...+...| ++++|...++++ +.+|++ +..+..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~--~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS--PYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC--HHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC--HHHHHHHHHHHHHHhccccc
Confidence 777 4666664 677877779999999999988 689999999998 888888 899999999999975
Q ss_pred ----CcHHHHHHHHHH-H
Q 046631 734 ----NWENVDKVRKEM-R 746 (813)
Q Consensus 734 ----~~~~A~~~~~~m-~ 746 (813)
..++|.++++++ .
T Consensus 329 ~~~~~~~~A~~~~~~l~~ 346 (382)
T 2h6f_A 329 NKEDILNKALELCEILAK 346 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 258999999998 5
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-12 Score=128.64 Aligned_cols=196 Identities=14% Similarity=0.101 Sum_probs=151.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA 623 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 623 (813)
....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445667777788888999999888887753 367888889999999999999999999998853 3356678888889
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHH
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (813)
+...|++++|..+++++.+. .| +...+..++.++.+.|++++|.+.++++ ...|....+|..++..+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999998865 45 5788889999999999999999999886 4456556689999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
|+..++++++..|.+ +..+..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGH--ADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999988 888999999999999999999999999864
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-12 Score=118.34 Aligned_cols=165 Identities=12% Similarity=0.087 Sum_probs=140.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCC 655 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 655 (813)
++..|..+...|...|++++|++.|++.++. .|+ ...+..+...+...|++++|...+...... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 5667888888999999999999999998884 454 457888888889999999999999888754 554 777888
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
++..+...+++++|.+.+++. ...|....+|..++..+...|++++|+..++++++++|.+ +..+..++.+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF--IRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh--hhHHHHHHHHHHHCCC
Confidence 888999999999999988876 4566666689999999999999999999999999999998 8899999999999999
Q ss_pred cHHHHHHHHHHHHCC
Q 046631 735 WENVDKVRKEMRERG 749 (813)
Q Consensus 735 ~~~A~~~~~~m~~~~ 749 (813)
+++|.+.+++..+..
T Consensus 157 ~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 157 RDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999988654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=123.56 Aligned_cols=245 Identities=10% Similarity=-0.032 Sum_probs=191.2
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCCh----hhHHHHHHH
Q 046631 412 VTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQ----ATWNAMIAG 487 (813)
Q Consensus 412 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~ 487 (813)
..+......+...|+++.|...+..+++..+....++..+...|...|++++|...|++.....++. ..|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455666788899999999999999999887766788889999999999999999999866522232 348899999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 046631 488 YTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYA 567 (813)
Q Consensus 488 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 567 (813)
|...|++++|+..|++..+.. |+ +..++..+...|...|++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~--~~----------------------------------~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD--TT----------------------------------RLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TT----------------------------------CTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC--cc----------------------------------cHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999988742 22 234577888889999999999
Q ss_pred HHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCc---HHHHHHHHHHH
Q 046631 568 ANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGL---VDEGLQIFDLM 640 (813)
Q Consensus 568 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~---~~~a~~~~~~~ 640 (813)
.+.|++..+ .+...|..+...+...+++++|+..|+++.+. .|+ ...+..+...+...|+ +++|...++++
T Consensus 128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 999998874 36777888873444456999999999999984 455 5677777778887787 88899988888
Q ss_pred HHhcCCCCC------hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHH
Q 046631 641 QQEYKIQPS------TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 641 ~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 694 (813)
.+...-.|+ ...|..++..|.+.|++++|.+.++++ ...|+.+.++..+.....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 766433344 267888999999999999999999987 566776656666554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-12 Score=136.38 Aligned_cols=344 Identities=10% Similarity=-0.004 Sum_probs=226.9
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCcchHHHHHHHHHhc
Q 046631 382 MISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQ---DVGKQTHAYLLRHGIHFEGMESYLIDMYAKS 458 (813)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (813)
+...+.+.|++++|+++|++..+.|. ++ .+..+...+...|+. ++|...+....+. .......|..++...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CT--GGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 56667889999999999999988763 32 333344445556777 8999999888866 224455566645555
Q ss_pred C-----CHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChH
Q 046631 459 G-----LIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLE---EAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIE 530 (813)
Q Consensus 459 g-----~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~---~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 530 (813)
+ +.++|...|++.... -+...+..|...|...+..+ ++.+.+......|. ......+...+...+.++
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFAN-GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHT-TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 4 788999999986532 23447778888888776544 45555555555543 334444555555556554
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCCC---CCHhHHHHHHHHHHhc----CChHHHHH
Q 046631 531 LGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSG---VINYAANVFAKIPE---KNSVTYTTMILGYGQH----GMSERALS 600 (813)
Q Consensus 531 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~ 600 (813)
.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..|...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44444333333323334458888999999999 89999999987752 3455557777777655 78999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC-----CHHHHHHH
Q 046631 601 LFRSMKGCGIEPDAITFVAVLSA-C--SYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVG-----KVVEAYEF 672 (813)
Q Consensus 601 ~~~~m~~~g~~p~~~~~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~ 672 (813)
.|++.. .| +...+..|... + ...+++++|..+|++..+. | +...+..|+.+|. .| ++++|+++
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999987 33 34455555555 3 4689999999999998865 4 6778888888887 55 99999999
Q ss_pred HHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh----cCCcHHHHHHHHH
Q 046631 673 VKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE----EGNWENVDKVRKE 744 (813)
Q Consensus 673 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 744 (813)
|++.. .++. ..+..|...|.. ..|.++|...++++.+.+ + +.....|+.+|.. ..+.++|..++++
T Consensus 310 ~~~Aa-~g~~-~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 310 FEKAV-GREV-AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--Q--NSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHTTT-TTCH-HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--C--TTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHh-CCCH-HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--h--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99998 4444 488888877776 338999999999998754 3 5677888888875 4588999999999
Q ss_pred HHHCCC
Q 046631 745 MRERGL 750 (813)
Q Consensus 745 m~~~~~ 750 (813)
..+.|.
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 998775
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-11 Score=120.78 Aligned_cols=205 Identities=14% Similarity=0.090 Sum_probs=157.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDM 557 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 557 (813)
...|..+...|...|++++|+..|+++.+.. |+ +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~----------------------------------~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PS----------------------------------SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC----------------------------------hHHHHHHHHHH
Confidence 4567788888888888888888888877642 22 22344555556
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 046631 558 YSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEG 633 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a 633 (813)
|...|++++|.+.|+++. ..+...|..+...|...|++++|+++++++.+.+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666554 23567778888888888888888888888887434554 44677788888899999999
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 634 LQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
..+++++.+. .| +...+..++.+|.+.|++++|...++++ ...|.....+..+...+...|+.++|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999988865 45 4788889999999999999999999887 44556666888889999999999999999999999
Q ss_pred CCCCCCCchhHH
Q 046631 712 MDTRNSMPGYHV 723 (813)
Q Consensus 712 ~~p~~~~~~~~~ 723 (813)
..|++ +....
T Consensus 238 ~~p~~--~~~~~ 247 (252)
T 2ho1_A 238 LYPGS--LEYQE 247 (252)
T ss_dssp HCTTS--HHHHH
T ss_pred HCCCC--HHHHH
Confidence 99987 55443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-12 Score=119.04 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=45.2
Q ss_pred CCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046631 562 GVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFD 638 (813)
Q Consensus 562 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 638 (813)
|++++|...|++.. .| +...|..+...|...|++++|+..|++.++.. .+...+..+..++...|++++|...|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444433 12 34444444455555555555555555554433 344444444445555555555555555
Q ss_pred HHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHH
Q 046631 639 LMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 639 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
++.+. .|+ ...+..++.++.+.|++++|++.+++
T Consensus 176 ~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 176 KALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44432 342 44444445555555555555544443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-11 Score=128.01 Aligned_cols=311 Identities=12% Similarity=0.041 Sum_probs=217.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCH---HHHHHHHhhcCCCCCChhhHHHHHHHHHhCC-
Q 046631 417 LLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLI---KTARQIFEKNDSGDRDQATWNAMIAGYTQNG- 492 (813)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~- 492 (813)
+...+.+.|++++|...+..+.+.|.. .....|..+|...|+. ++|...|++.... +...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~--~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS--EAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC--TGGGTCC------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCC
Confidence 445566789999999999999888643 3333466666777888 9999999988743 6677777777566665
Q ss_pred ----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCCh---HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---
Q 046631 493 ----LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNI---ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSG--- 562 (813)
Q Consensus 493 ----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 562 (813)
++++|+..|++..+.|... .+..+...+...+.. ..+...+......| +......|...|...+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 7889999999999977443 333444444443332 34555555555555 3456777888888877
Q ss_pred -CHHHHHHHHhhCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----CcHHHHH
Q 046631 563 -VINYAANVFAKIPEKNSVTYTTMILGYGQHG---MSERALSLFRSMKGCGIEPDAITFVAVLSACSYA----GLVDEGL 634 (813)
Q Consensus 563 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~----g~~~~a~ 634 (813)
..+.+..+++.....+..++..|...|...| +.++|++.|++..+.| .++...+..|...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 4556666777777777779999999999999 9999999999999987 55555556666677554 7999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHH-H--hccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhC-----CHHHHHHHH
Q 046631 635 QIFDLMQQEYKIQPSTEHYCCVADM-L--GRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHG-----HSELAEVVA 706 (813)
Q Consensus 635 ~~~~~~~~~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~ 706 (813)
.+|++.. . -+...+..|+.+ | ...|++++|++++++....++.. .+..|...|. .| |.++|...+
T Consensus 238 ~~~~~aa-~----g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~-A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 238 ALLEKIA-P----GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPR-AELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHG-G----GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHc-C----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 9998875 2 257778888887 4 56899999999999987766665 8888888887 66 999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHHHCCC
Q 046631 707 KKLLEMDTRNSMPGYHVLLSNIYAE----EGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 707 ~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 750 (813)
+++. +.+ +..+..|+.+|.. ..+.++|.+++++..+.|.
T Consensus 311 ~~Aa---~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 311 EKAV---GRE--VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HTTT---TTC--HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHh---CCC--HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 9998 676 8899999998887 3499999999999988764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=125.28 Aligned_cols=211 Identities=13% Similarity=0.054 Sum_probs=148.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
....|..+...+...|++++|+..|+++.+.. |+ +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHH
Confidence 45567777777888888888888888877642 22 2234455556
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046631 557 MYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEG 633 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a 633 (813)
.|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 6666666666666666554 2366778888888889999999999999988853 34566788888889999999999
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 634 LQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
..+++++.+. .| +...+..++.++.+.|++++|++.++++ ...|+...+|..+...+...|++++|...++++++
T Consensus 145 ~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 145 LPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 9999998865 45 4788899999999999999999999886 44566666899999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHH
Q 046631 712 MDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 712 ~~p~~~~~~~~~~l~~~~ 729 (813)
.+|++ +..+..++.+.
T Consensus 222 ~~p~~--~~~~~~~~~l~ 237 (243)
T 2q7f_A 222 IQPDH--MLALHAKKLLG 237 (243)
T ss_dssp HCTTC--HHHHHHHTC--
T ss_pred cCcch--HHHHHHHHHHH
Confidence 99998 77666655443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-12 Score=137.45 Aligned_cols=262 Identities=12% Similarity=0.009 Sum_probs=166.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHhccCCChHHHHHHHHHHHHc----CC-CCchhHHHHH
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPN-V----VTIASVLPACNPMGNIELGKQLHGFSIRY----LL-DQNVFVGTSL 554 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~~~~p~-~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 554 (813)
...+...|++++|+..|+++.+.+ |+ . ..+..+...+...|+++.|...++...+. +. .....++..+
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334444444444444444444431 11 1 23333444444444444444444443322 10 1123455666
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---------CHhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHhC
Q 046631 555 IDMYSKSGVINYAANVFAKIPEK---------NSVTYTTMILGYGQHGM-----------------SERALSLFRSMKGC 608 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~ 608 (813)
...|...|++++|...|++..+- ...++..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66677777777777776655421 24467777778888888 88888887776542
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhC--
Q 046631 609 ----GIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELG-- 677 (813)
Q Consensus 609 ----g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 677 (813)
+-.+. ..++..+...+...|++++|..++++..+...-.++ ...+..++.+|...|++++|.+.+++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11111 236777777888899999999988887654211122 3478888899999999999999887752
Q ss_pred --cCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC----CchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 678 --EEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS----MPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 678 --~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..++ ...++..+...+...|++++|...+++++++.+... ....+..++.+|...|++++|...+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1121 234788888999999999999999999887654321 0336778899999999999999999988754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-12 Score=138.40 Aligned_cols=191 Identities=7% Similarity=-0.068 Sum_probs=166.8
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhhCC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVI-NYAANVFAKIP--E-KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLS 622 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 622 (813)
+...+..+...|...|++ ++|++.|++.. . .+...|..+...|...|++++|+..|++..+ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 556677777778888888 88888887765 2 3578999999999999999999999999998 5688788889999
Q ss_pred HHhcc---------CcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc--------CCHHHHHHHHHHhC-cCC---
Q 046631 623 ACSYA---------GLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV--------GKVVEAYEFVKELG-EEG--- 680 (813)
Q Consensus 623 a~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~-~~~--- 680 (813)
.+... |++++|...++++.+. .|+ ...|..++.+|... |++++|++.+++.. ..|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 99999 9999999999999865 675 88999999999998 99999999999974 366
Q ss_pred ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 681 NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
+.+.+|..+..++...|++++|...++++++++|++ +..+..++.++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW--PEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 677799999999999999999999999999999999 89999999999999999999875443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-11 Score=116.69 Aligned_cols=208 Identities=11% Similarity=0.028 Sum_probs=157.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
+...|..+...+...|++++|+..|+++.+.. |+ +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHH
Confidence 45577777888888888888888888877642 22 1224555556
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHH
Q 046631 557 MYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQH-GMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVD 631 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~ 631 (813)
.|...|++++|.+.|+++. ..+..+|..+...|... |++++|+..++++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666554 23567788888888888 999999999999887433444 457778888889999999
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCC-ChHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 046631 632 EGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEG-NVLEIWGSLLGSCRLHGHSELAEVVAKK 708 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 708 (813)
+|...++++.+. .|+ ...+..++.++.+.|++++|.+.++++ ...| .....+..+...+...|+.+.+..+++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999988865 454 788889999999999999999999886 3445 5555777778888889999999999999
Q ss_pred HhcCCCCCCCchhHHHH
Q 046631 709 LLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 709 ~~~~~p~~~~~~~~~~l 725 (813)
+.+..|++ +.....+
T Consensus 208 ~~~~~p~~--~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYS--EELQTVL 222 (225)
T ss_dssp HHHHCTTC--HHHHHHH
T ss_pred HHHhCCCC--HHHHHHh
Confidence 99899987 6655444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-12 Score=134.58 Aligned_cols=95 Identities=12% Similarity=0.020 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCCCC-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHH
Q 046631 447 MESYLIDMYAKSGLIKTARQIFEKNDSGDRD-----QATWNAMIAGYTQNGLLEEAFVAFRQMLEH----NVTPN-VVTI 516 (813)
Q Consensus 447 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~t~ 516 (813)
........+...|++++|...|++.....|+ ...|..+...|...|++++|+..|++.... +-.|. ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3345566677777777777777765433342 235666677777777777777777765432 11111 2234
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHH
Q 046631 517 ASVLPACNPMGNIELGKQLHGFSIR 541 (813)
Q Consensus 517 ~~ll~~~~~~~~~~~a~~~~~~~~~ 541 (813)
..+...+...|++++|...+....+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555566666555554443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-09 Score=119.93 Aligned_cols=231 Identities=9% Similarity=-0.002 Sum_probs=172.1
Q ss_pred hHHHHHHHHHhCC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHH-HHHHHHHHcCCCCchhHH
Q 046631 480 TWNAMIAGYTQNG-------LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGK-QLHGFSIRYLLDQNVFVG 551 (813)
Q Consensus 480 ~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~ 551 (813)
.|...+.---..+ ..+.+..+|++.+.. +.-+...|.....-+...|+.+.|. .+++..... .+.+...+
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 4555555433332 123456778887765 2345666766777677778888886 999988864 34566677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-------------C------------CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046631 552 TSLIDMYSKSGVINYAANVFAKIPE-------------K------------NSVTYTTMILGYGQHGMSERALSLFRSMK 606 (813)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~-------------~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (813)
-.++....+.|++++|.++|+++.+ | ....|...+....+.|+.+.|..+|.+.+
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7888888999999999999998763 2 12368888888888999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCcC-C--
Q 046631 607 GC-GIEPDAITFVAVLSACSYA-GLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGEE-G-- 680 (813)
Q Consensus 607 ~~-g~~p~~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-- 680 (813)
+. + .+....|...+..-.+. ++.+.|..+|+...+.+ | +...+...++.....|+.+.|..+|++.... +
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~---p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF---ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 85 2 12233443333322333 55899999999999873 4 4666778888888999999999999997433 2
Q ss_pred -ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 681 -NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 681 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
....+|...+..-.++|+.+.+..+.+++.+..|++
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 244589999999999999999999999999999997
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=123.49 Aligned_cols=242 Identities=11% Similarity=-0.035 Sum_probs=160.3
Q ss_pred HCCCcHHHHHHHHHHHHCCCC---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHH
Q 046631 388 QNGLDDEGLMLVYEMQKQGFM---IDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTA 464 (813)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~---pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 464 (813)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+++..+....++..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 457899999999999886421 23557777888888899999999999998888776557778888888889999999
Q ss_pred HHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcC
Q 046631 465 RQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYL 543 (813)
Q Consensus 465 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 543 (813)
.+.|++.....| +...|..+...|...|++++|+..|+++.+. .|+.......+..+...|+.++|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 998887665455 6778888888888899999999999888874 3554444444445555677777777776665543
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 046631 544 LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKN-------SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAIT 616 (813)
Q Consensus 544 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 616 (813)
. ++...+ .++..+...++.++|.+.+++..+.+ ...|..+...|...|++++|+..|+++.+. .|+..
T Consensus 175 ~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~- 249 (275)
T 1xnf_A 175 D-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF- 249 (275)
T ss_dssp C-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC-
T ss_pred C-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhH-
Confidence 2 222222 35555666666666777666655432 345555666666666666666666666652 33221
Q ss_pred HHHHHHHHhccCcHHHHHHHH
Q 046631 617 FVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~ 637 (813)
.....++...|++++|++.+
T Consensus 250 -~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 -VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHhhHHHH
Confidence 11123344455555554443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.7e-12 Score=129.46 Aligned_cols=200 Identities=15% Similarity=0.044 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHH
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPE-----KN----SVTYTTMILGYGQHGM--------------------SERAL 599 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 599 (813)
.++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3455666667777777777777666541 12 3367777777778888 88888
Q ss_pred HHHHHHHhC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHH
Q 046631 600 SLFRSMKGC----GIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAY 670 (813)
Q Consensus 600 ~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 670 (813)
+.+++..+. +..+. ..++..+...+...|++++|...+++..+...-.++ ...+..++.++...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888776542 11111 236777777888899999999998887654211122 447888899999999999999
Q ss_pred HHHHHhC----cCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC----chhHHHHHHHHHhcCCcHHHH
Q 046631 671 EFVKELG----EEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM----PGYHVLLSNIYAEEGNWENVD 739 (813)
Q Consensus 671 ~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~ 739 (813)
+.+++.. ..++ ...++..+...+...|++++|...++++++..+.... ...+..++.+|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9888752 2222 2347788899999999999999999999876544210 336778999999999999999
Q ss_pred HHHHHHHHC
Q 046631 740 KVRKEMRER 748 (813)
Q Consensus 740 ~~~~~m~~~ 748 (813)
..+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998864
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=138.25 Aligned_cols=298 Identities=11% Similarity=0.015 Sum_probs=208.9
Q ss_pred CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc----chHHHHHHHHHhcCCHHHHHHHHhhcCCC------CC-
Q 046631 408 MIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE----GMESYLIDMYAKSGLIKTARQIFEKNDSG------DR- 476 (813)
Q Consensus 408 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~- 476 (813)
......+......+...|+++.|...++.+++..+... .++..+...|...|++++|...|++.... .|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555667777889999999999999999999876543 35678889999999999999999864211 11
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVT-PNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 555 (813)
...++..+...|...|++++|+..+++....... ++... ...++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG-------------------------------EARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc-------------------------------hHHHHHHHH
Confidence 3457888899999999999999999988763100 11100 011233444
Q ss_pred HHHHhcCC--------------------HHHHHHHHhhCC-------CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046631 556 DMYSKSGV--------------------INYAANVFAKIP-------EK--NSVTYTTMILGYGQHGMSERALSLFRSMK 606 (813)
Q Consensus 556 ~~~~~~g~--------------------~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (813)
..|...|+ +++|.+.+++.. .+ ...++..+...|...|++++|+..+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444 555554444332 11 23467778888888888888888888876
Q ss_pred hCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhC
Q 046631 607 GCGI-EPD----AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELG 677 (813)
Q Consensus 607 ~~g~-~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 677 (813)
+... .++ ..++..+...+...|++++|..++++..+...-.++ ..++..++.+|...|++++|.+.+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5311 112 226777888888999999999999887654211122 5678889999999999999999988762
Q ss_pred ----cCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC----CchhHHHHHHHHHhcCCcH
Q 046631 678 ----EEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS----MPGYHVLLSNIYAEEGNWE 736 (813)
Q Consensus 678 ----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~~~ 736 (813)
..++ ...++..+...+...|++++|...+++++++.+... ....+..++.+|...|+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 2222 234788899999999999999999999887633221 1445667888888877664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.6e-12 Score=142.03 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=148.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCC 655 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 655 (813)
+..+|+.|...|.+.|++++|++.|++.++ +.|+ ...+..+..++.+.|++++|+..|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 467889999999999999999999999998 5665 458889999999999999999999999854 786 889999
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
++.+|.+.|++++|++.+++. ..+|+...+|..++.++...|++++|+..++++++++|++ +..+..++.+|...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~--~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF--PDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHhhhhhHHHhccc
Confidence 999999999999999999886 6678888899999999999999999999999999999999 9999999999999999
Q ss_pred cHHHHHHHHHHHHC
Q 046631 735 WENVDKVRKEMRER 748 (813)
Q Consensus 735 ~~~A~~~~~~m~~~ 748 (813)
|++|.+.++++.+.
T Consensus 161 ~~~A~~~~~kal~l 174 (723)
T 4gyw_A 161 WTDYDERMKKLVSI 174 (723)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-11 Score=114.03 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=146.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA 623 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 623 (813)
+..+|..+...|.+.|++++|.+.|++.. ..+..+|..+...|...|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 55678999999999999999999999876 3478899999999999999999999999998843 3345567777778
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHH
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (813)
+...++++.+...+.+..+. .|+ ...+..++.+|.+.|++++|++.+++. ...|..+.+|..++.++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999998854 564 888999999999999999999999886 5677777799999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 046631 702 AEVVAKKLLEMDTRN 716 (813)
Q Consensus 702 a~~~~~~~~~~~p~~ 716 (813)
|+..++++++++|++
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 999999999999875
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-12 Score=134.57 Aligned_cols=272 Identities=12% Similarity=0.009 Sum_probs=175.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc----chHHHHHHHHHhcCCHHHHHHHHhhcCCC------CC-ChhhH
Q 046631 413 TVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE----GMESYLIDMYAKSGLIKTARQIFEKNDSG------DR-DQATW 481 (813)
Q Consensus 413 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~ 481 (813)
.+..+...+...|+++.|...++.+++..+... .++..+...|...|++++|...|++.... .+ ....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 333444556666667777766666666644432 23455555666666666666665543211 11 23345
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHh
Q 046631 482 NAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYL-LDQNVFVGTSLIDMYSK 560 (813)
Q Consensus 482 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~ 560 (813)
..+...|...|++++|+..|++...... +.+ ......++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHH
Confidence 5555566666666666666655443200 000 01123345566666666
Q ss_pred cCC-----------------HHHHHHHHhhCCC-------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC
Q 046631 561 SGV-----------------INYAANVFAKIPE-------K--NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE-PD 613 (813)
Q Consensus 561 ~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 613 (813)
.|+ +++|.+.+++..+ + ...+|..+...|...|++++|+..+++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 676 6666666665431 1 2347778888899999999999999888763111 12
Q ss_pred ----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhCc-------
Q 046631 614 ----AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELGE------- 678 (813)
Q Consensus 614 ----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 678 (813)
..++..+...+...|++++|...+++..+...-..+ ..++..++.+|...|++++|.+.+++...
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 126778888899999999999999888754211112 57788999999999999999999887621
Q ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 679 EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
.+....++..+...+...|++++|...+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 1122347888999999999999999999999988765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-11 Score=128.97 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCc------CCChHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEY---KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGE------EGNVLEI 685 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~ 685 (813)
++..+...|...|++++|...+++..+.. +..|. ..++..++.+|.+.|++++|.+.+++... .+.....
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444555555555555554444310 11122 44455555555555555555555544311 1111112
Q ss_pred HHHHHHHHHHhCC---HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 686 WGSLLGSCRLHGH---SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 686 ~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+..+...+...|+ .++|...+++. ...|.. ...+..++.+|...|++++|.+.+++..+
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~--~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL--EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444555 44444444443 111222 34455556666666666666666655544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-11 Score=126.47 Aligned_cols=166 Identities=11% Similarity=0.024 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHhhCCC-----C----CHhHHHHHHHHHHhcCChHHHHH
Q 046631 550 VGTSLIDMYSKSGV--------------------INYAANVFAKIPE-----K----NSVTYTTMILGYGQHGMSERALS 600 (813)
Q Consensus 550 ~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~ 600 (813)
++..+...|...|+ +++|.+.+++..+ . ...++..+...+...|++++|+.
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55566666666676 6777666665431 1 23467788888889999999999
Q ss_pred HHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHH
Q 046631 601 LFRSMKGCGI-EPD----AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYE 671 (813)
Q Consensus 601 ~~~~m~~~g~-~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 671 (813)
.+++..+... .++ ..++..+...+...|++++|..++++..+...-.++ ..++..++.+|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9988765311 111 226777888889999999999999887654211122 6678889999999999999999
Q ss_pred HHHHhCc----CC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 672 FVKELGE----EG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 672 ~~~~~~~----~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
.+++... .+ ....++..+...+...|++++|...+++++++.+.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9887621 12 22337888999999999999999999999988765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-11 Score=116.90 Aligned_cols=188 Identities=11% Similarity=-0.038 Sum_probs=112.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP---E-KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA-ITFVAVL 621 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll 621 (813)
|+..+......|.+.|++++|.+.|++.. . ++...+..+..++...|++++|+..|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 44556666666666777777776666554 2 4555555566666666777777777766666 34433 3555666
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCC-h-------hHHHHHHHHHhccCCHHHHHHHHHHh-CcCCC--hHHHHHHHH
Q 046631 622 SACSYAGLVDEGLQIFDLMQQEYKIQPS-T-------EHYCCVADMLGRVGKVVEAYEFVKEL-GEEGN--VLEIWGSLL 690 (813)
Q Consensus 622 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~~l~ 690 (813)
..+...|++++|...+++..+. .|+ . ..|..++..+.+.|++++|++.++++ ...|+ ...+|..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 6666666777777666666643 343 3 34666666666666666666666665 33455 445666666
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 691 GSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.++... +...++++..+.+.+ ...+. .......|.+++|...+++..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~--~~~~~--~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSN--KEKYA--SEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTC--HHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccCC--HHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 665433 334445555555443 33222 22334445569999999998854
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-08 Score=113.19 Aligned_cols=147 Identities=12% Similarity=0.107 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCC---hHHHHH
Q 046631 208 VEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGC---FDFARK 284 (813)
Q Consensus 208 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 284 (813)
.+.+..|++-+..+ +-|..+|..++..+...+.++.++.+|+.++..-+. ....|...+..-.+.|. ++.+..
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~---~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL---MANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 33444444444433 346667777887777777888888888888877643 56677777777777777 888888
Q ss_pred HHhhcCC-----CCcchHHHHHHHHHhCCCc--------hHHHHHHHHHHHhCCC-CCCh-hhHHHHHHHhc--------
Q 046631 285 IFDNCLE-----RNTEVWNTMIGGYVQNNHP--------VEAIELFVQVLELDEI-VFDD-VTFLSALSAVS-------- 341 (813)
Q Consensus 285 ~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~m~~~g~-~p~~-~t~~~ll~~~~-------- 341 (813)
+|++... +++..|...+....+.++. +.+.++|+..+..-|. .|+. ..|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 8887643 5666777777655554443 3344778777777787 6654 45555554432
Q ss_pred -ccCcchHHHHHHHHHHH
Q 046631 342 -QLQELDLGQQLHAYIIK 358 (813)
Q Consensus 342 -~~~~~~~a~~~~~~~~~ 358 (813)
..++++.+..+|..++.
T Consensus 205 eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 23345667777777654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.5e-10 Score=112.74 Aligned_cols=217 Identities=12% Similarity=0.081 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-------cCCCh-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046631 495 EEAFVAFRQMLEHNVTPNVVTIASVLPACN-------PMGNI-------ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK 560 (813)
Q Consensus 495 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 560 (813)
++|+.+|++.+... +-+...|..+...+. ..|+. ++|..+++...+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665531 223334444443332 23443 5566666665553112344566677777777
Q ss_pred cCCHHHHHHHHhhCCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 046631 561 SGVINYAANVFAKIPE--K-NSV-TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC-SYAGLVDEGLQ 635 (813)
Q Consensus 561 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~-~~~g~~~~a~~ 635 (813)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++.++.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776653 3 233 67777777777777777777777777743 22333343333222 23577778887
Q ss_pred HHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCc----CC-ChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 636 IFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGE----EG-NVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 636 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
+|++..+. .| +...|..++..+.+.|++++|..+|++... .| ....+|..++......|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777754 35 367777777777777888888877777643 22 23447777777777777777777777777
Q ss_pred hcCCCCC
Q 046631 710 LEMDTRN 716 (813)
Q Consensus 710 ~~~~p~~ 716 (813)
++..|++
T Consensus 268 ~~~~p~~ 274 (308)
T 2ond_A 268 FTAFREE 274 (308)
T ss_dssp HHHTTTT
T ss_pred HHHcccc
Confidence 7777765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.6e-11 Score=128.94 Aligned_cols=179 Identities=11% Similarity=-0.007 Sum_probs=158.5
Q ss_pred HHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 046631 564 INYAANVFAKIP---EKNSVTYTTMILGYGQHGMS-ERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFD 638 (813)
Q Consensus 564 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~ 638 (813)
++++...+++.. ..+...|..+...|...|++ ++|++.|++.++. .|+ ...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455556665443 34788999999999999999 9999999999984 454 6689999999999999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhcc---------CCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh--------CCHH
Q 046631 639 LMQQEYKIQPSTEHYCCVADMLGRV---------GKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH--------GHSE 700 (813)
Q Consensus 639 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~--------g~~~ 700 (813)
+.. .+.|+...+..++.+|... |++++|++.++++ ...|+...+|..++.++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 5579889999999999999 9999999999986 56677777999999999999 9999
Q ss_pred HHHHHHHHHhcCCC---CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 701 LAEVVAKKLLEMDT---RNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 701 ~a~~~~~~~~~~~p---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
+|+..++++++++| .+ +..+..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSN--PDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 88 9999999999999999999999999998653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-11 Score=121.73 Aligned_cols=234 Identities=16% Similarity=0.116 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C-
Q 046631 513 VVTIASVLPACNPMGNIELGKQLHGFSIRY-------LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-------K- 577 (813)
Q Consensus 513 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 577 (813)
..++..+...+...|++++|..+++.+.+. .......++..+...|...|++++|...|++..+ +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777778888888888888888887763 2333456777788888888888888888877642 1
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---
Q 046631 578 ---NSVTYTTMILGYGQHGMSERALSLFRSMKGC------GIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEY--- 644 (813)
Q Consensus 578 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--- 644 (813)
...+|..+...|...|++++|+..++++.+. +-.|+ ...+..+...+...|++++|..+++++.+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3457777888888888888888888888764 22232 2356777778888888888888888876531
Q ss_pred --CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCc----------CCChH------HHHHHHHHHHHHhCCHHHHHHH
Q 046631 645 --KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGE----------EGNVL------EIWGSLLGSCRLHGHSELAEVV 705 (813)
Q Consensus 645 --~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~------~~~~~l~~~~~~~g~~~~a~~~ 705 (813)
+..|. ...+..++.+|.+.|++++|.+.++++.. .+... ..+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 11232 56777888888888888888888877632 11111 1222333334444555556666
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 706 AKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 706 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
++++....|.. +..+..++.+|.+.|++++|.+++++..+.
T Consensus 267 ~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVDSPTV--TTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -------CHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCCCCchH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777677777 788999999999999999999999998753
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.2e-11 Score=124.80 Aligned_cols=295 Identities=7% Similarity=-0.047 Sum_probs=216.0
Q ss_pred HhcCCChHHHHHHHHHHHHhCCC--Cc-c--hHHHHHHH--HHhcCCHHHHH-----------HHHhhcCCCCCChhhHH
Q 046631 421 ASNLRNQDVGKQTHAYLLRHGIH--FE-G--MESYLIDM--YAKSGLIKTAR-----------QIFEKNDSGDRDQATWN 482 (813)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~--~~-~--~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~ 482 (813)
+.+.++++.|..+.+.+.+.-.. .+ . ++-.++.. ..-.+.++.+. +.++.+.....+...+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 55789999999999998775322 23 2 22222222 22233444444 56665542122222222
Q ss_pred ------HHHHHHHhCCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHhccCCChHHHHHHHHHHHHc--CC----C
Q 046631 483 ------AMIAGYTQNGLLEEAFVAFRQMLEHN-VTPN----VVTIASVLPACNPMGNIELGKQLHGFSIRY--LL----D 545 (813)
Q Consensus 483 ------~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~----~ 545 (813)
.....+...|++++|+..|++....- -.++ ..++..+...+...|+.+.|...+....+. .. .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 24566788999999999999987641 1122 356778888899999999999999988764 11 1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIPE-----KN----SVTYTTMILGYGQHGMSERALSLFRSMKGC----GIEP 612 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 612 (813)
....+++.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+. +..|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1245788889999999999999999988762 22 247888999999999999999999998872 2323
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCC-hhHHHHHHHHHhccCC---HHHHHHHHHHhCcCCChHHH
Q 046631 613 D-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKI--QPS-TEHYCCVADMLGRVGK---VVEAYEFVKELGEEGNVLEI 685 (813)
Q Consensus 613 ~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~ 685 (813)
+ ..++..+...+...|++++|...+++..+...- .|. ...+..+..+|...|+ +++|+.++++....+....+
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3 457888899999999999999999988754211 122 3446778999999999 99999999998666666668
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+..+...+...|++++|...+++++++...
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999876443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-10 Score=106.55 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADM 659 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 659 (813)
.|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|..+++++.+. .| +...+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHH
Confidence 34444555555555555555555554421 223445555555666666666666666666543 33 35566666666
Q ss_pred HhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHH
Q 046631 660 LGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENV 738 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 738 (813)
+...|++++|.+.++++ ...|....+|..++..+...|++++|...++++++..|.+ +..+..++.+|...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE--GKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666664 2334444467777777777777777777777777777776 67777777777777777777
Q ss_pred HHHHHHHHHC
Q 046631 739 DKVRKEMRER 748 (813)
Q Consensus 739 ~~~~~~m~~~ 748 (813)
...++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777777654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=8e-12 Score=127.32 Aligned_cols=238 Identities=13% Similarity=0.080 Sum_probs=150.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc------C-
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLEH-------NVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY------L- 543 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 543 (813)
..++..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...++...+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666666666667777776666666552 11222344555666666667777776666665543 1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 046631 544 LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE----------K-NSVTYTTMILGYGQHGMSERALSLFRSMKGC---- 608 (813)
Q Consensus 544 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 608 (813)
......++..+...|...|++++|.+.|+++.+ + ...++..+...|...|++++|+++++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 122345667777778888888888887776542 1 3456788888889999999999999988774
Q ss_pred --CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhc------CCCCC-h------hHHHHHHHHHhccCCHHHHHHH
Q 046631 609 --GIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEY------KIQPS-T------EHYCCVADMLGRVGKVVEAYEF 672 (813)
Q Consensus 609 --g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~------~~~~~l~~~~~~~g~~~~A~~~ 672 (813)
+..|+. .++..+...+...|++++|..+++++.+.. ...+. . ..+..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 223333 367778888999999999999998887531 11222 1 2222333344455566666666
Q ss_pred HHHhC-cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 673 VKELG-EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 673 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
++... ..|....+|..++..|...|++++|...+++++++.|+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66664 34556668999999999999999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-10 Score=107.99 Aligned_cols=205 Identities=8% Similarity=0.026 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--C-CCHhHHHHHHH
Q 046631 511 PNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--E-KNSVTYTTMIL 587 (813)
Q Consensus 511 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~ 587 (813)
.|...+......+...|++++|...++...+....++...+..+..+|.+.|++++|.+.|++.. . .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45677888888899999999999999999988754677777779999999999999999999876 2 35778999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC---hhHHHHH
Q 046631 588 GYGQHGMSERALSLFRSMKGCGIEPD-A-------ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS---TEHYCCV 656 (813)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 656 (813)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|+..|+++. .+.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 999999999999999999984 454 3 347777778889999999999999988 55776 5778888
Q ss_pred HHHHhccCCHHHHHHHHHHhCcC-CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 657 ADMLGRVGKVVEAYEFVKELGEE-GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
+.+|...|+. .++++... +.....+..+ .....+.+++|...++++++++|++ +.....++.+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNR--TEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHH
Confidence 8888766643 23333111 1112233332 2344567899999999999999998 77777776654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-10 Score=113.63 Aligned_cols=213 Identities=13% Similarity=0.065 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhhCCC---C-CHhHHHHHHHHHHh
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYS-------KSGVI-------NYAANVFAKIPE---K-NSVTYTTMILGYGQ 591 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 591 (813)
++|..+|+.+.+.. +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888777753 346667777777765 45886 899999998653 3 56799999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH-H-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHh-ccCCHH
Q 046631 592 HGMSERALSLFRSMKGCGIEPDA-I-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLG-RVGKVV 667 (813)
Q Consensus 592 ~g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~ 667 (813)
.|++++|..+|+++++ +.|+. . .|..+...+.+.|++++|..+|++..+ ..|+ ...|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 56653 3 788999999999999999999999984 4554 555654444432 379999
Q ss_pred HHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC---CCC-CCCchhHHHHHHHHHhcCCcHHHHHHH
Q 046631 668 EAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM---DTR-NSMPGYHVLLSNIYAEEGNWENVDKVR 742 (813)
Q Consensus 668 ~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 742 (813)
+|.++|++. ...|+.+.+|..++..+...|+.++|..+++++++. .|+ . ...+..++..+.+.|+.++|..++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~--~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS--GEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC--HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999987 455666779999999999999999999999999996 443 3 567788889999999999999999
Q ss_pred HHHHHCCC
Q 046631 743 KEMRERGL 750 (813)
Q Consensus 743 ~~m~~~~~ 750 (813)
+++.+..+
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 99987654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-09 Score=114.30 Aligned_cols=30 Identities=7% Similarity=-0.024 Sum_probs=19.5
Q ss_pred CcchHHHHHHHH--HHCCCcHHHHHHHHHHHH
Q 046631 375 DVVSWNTMISAF--VQNGLDDEGLMLVYEMQK 404 (813)
Q Consensus 375 ~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~ 404 (813)
+..+-+.|-..| .+.+++++|..+++++..
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~ 40 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQ 40 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 333444455555 777888888888877655
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=7.6e-10 Score=102.59 Aligned_cols=164 Identities=15% Similarity=0.063 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACS 625 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~ 625 (813)
..+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4566778889999999999999999874 367889999999999999999999999999852 345668888888999
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHH
Q 046631 626 YAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 626 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 703 (813)
..|++++|..+++++.+. .| +...+..++.++.+.|++++|.+.++++ ...|....+|..++..+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999865 45 5888999999999999999999999986 445666669999999999999999999
Q ss_pred HHHHHHhcCCCCC
Q 046631 704 VVAKKLLEMDTRN 716 (813)
Q Consensus 704 ~~~~~~~~~~p~~ 716 (813)
..++++++..|++
T Consensus 165 ~~~~~~~~~~~~~ 177 (186)
T 3as5_A 165 PHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCc
Confidence 9999999998887
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-08 Score=107.18 Aligned_cols=198 Identities=13% Similarity=0.080 Sum_probs=118.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHH
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPE----------K-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE--P--DAI 615 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 615 (813)
+..+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 44455566666666666666655431 1 1234555666777777777777777776653211 1 123
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHhccCCHHHHHHHHHHhCcCC-C----hHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYC-----CVADMLGRVGKVVEAYEFVKELGEEG-N----VLEI 685 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~-~----~~~~ 685 (813)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++..... . ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566666677777888888887777764411111111111 23344667788888888877763211 1 1124
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC----CchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS----MPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+..+...+...|++++|...++++++..+... ....+..++.+|...|+.++|...+++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56667777777888888888877765533210 0235566777788888888888887777643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-09 Score=114.02 Aligned_cols=221 Identities=8% Similarity=0.019 Sum_probs=137.6
Q ss_pred ccCCChHHHHHHHHHHHHcCC-CC----chhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-----CHhHHHHHHHH
Q 046631 524 NPMGNIELGKQLHGFSIRYLL-DQ----NVFVGTSLIDMYSKSGVINYAANVFAKIPE-----K-----NSVTYTTMILG 588 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~ 588 (813)
...|+++.|...+....+... .+ ...++..+...|...|+++.|...+++..+ + ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 444555555555555443210 01 233556666667777777776666665431 1 13466777777
Q ss_pred HHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC--CCCC-hhHHHHHHHHH
Q 046631 589 YGQHGMSERALSLFRSMKGC----GIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK--IQPS-TEHYCCVADML 660 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~-~~~~~~l~~~~ 660 (813)
|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...+++..+... ..|. ..++..++.+|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 88888888888887776652 1111 123566777778888888888888887765210 2333 66777888888
Q ss_pred hccCCHHHHHHHHHHhC----c--CCChHHHHHHHHHHHHHhCC---HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh
Q 046631 661 GRVGKVVEAYEFVKELG----E--EGNVLEIWGSLLGSCRLHGH---SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE 731 (813)
Q Consensus 661 ~~~g~~~~A~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 731 (813)
.+.|++++|...+++.. . .+.....+..+...+...++ .++|...+++. ...|.. ...+..++.+|..
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~--~~~~~~la~~y~~ 348 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYI--EACARSAAAVFES 348 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHH--HHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHH--HHHHHHHHHHHHH
Confidence 88888888888887751 1 22333345556666666677 66677666652 122222 4566678888888
Q ss_pred cCCcHHHHHHHHHHHH
Q 046631 732 EGNWENVDKVRKEMRE 747 (813)
Q Consensus 732 ~g~~~~A~~~~~~m~~ 747 (813)
.|++++|.+.+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888887764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=129.31 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=145.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLS 622 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 622 (813)
+...++.|...|.+.|++++|++.|++.. .| +..+|+.+..+|.+.|++++|+..|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45678899999999999999999999876 33 688999999999999999999999999998 5665 558999999
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
++...|++++|++.|++..+. .|+ ...|..++.+|.+.|++++|++.+++. ..+|+...+|..|+.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999854 785 889999999999999999999999986 677888889999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 046631 701 LAEVVAKKLLEMDT 714 (813)
Q Consensus 701 ~a~~~~~~~~~~~p 714 (813)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999998877543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-09 Score=106.25 Aligned_cols=86 Identities=9% Similarity=0.000 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC-CchhHHHHHHHHHhc----------CCcHHHHHHHHHHHHCCCccCC
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS-MPGYHVLLSNIYAEE----------GNWENVDKVRKEMRERGLRKEV 754 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~ 754 (813)
+..++..+...|++++|+..++++++..|++. .+..+..++.+|... |++++|...++++.+..+
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---- 226 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---- 226 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----
Confidence 46778999999999999999999999999852 145788899999877 999999999999986432
Q ss_pred ceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 046631 755 GCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRN 794 (813)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 794 (813)
.+|........+..+...+.+
T Consensus 227 -------------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------------CChHHHHHHHHHHHHHHHHHH
Confidence 245455666677776666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=108.26 Aligned_cols=222 Identities=15% Similarity=0.099 Sum_probs=152.3
Q ss_pred ccCCChHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----------C-CHhHHHHH
Q 046631 524 NPMGNIELGKQLHGFSIRY-------LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE----------K-NSVTYTTM 585 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l 585 (813)
...|+++.|..++++..+. ..+....++..+...|...|++++|...|+++.+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777787777766652 2233466788888899999999999988887651 1 35578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc----C-CCCC-hhH
Q 046631 586 ILGYGQHGMSERALSLFRSMKGC------GIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEY----K-IQPS-TEH 652 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~ 652 (813)
...|...|++++|+..+++..+. .-.|+ ..++..+...+...|++++|..+++++.+.. + -.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988764 11232 3467778888889999999999998887541 1 1232 677
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhCc----------CCChHHHHHHHHHHHHHhCC------HHHHHHHHHHHhcCCCCC
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKELGE----------EGNVLEIWGSLLGSCRLHGH------SELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~ 716 (813)
+..++.+|.+.|++++|.++++++.. .+.....|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 88889999999999999998887621 22222255555444443333 233333333333333444
Q ss_pred CCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 717 SMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 717 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+..+..++.+|...|++++|..++++..+
T Consensus 252 --~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 --NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66788899999999999999999999875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=102.71 Aligned_cols=142 Identities=8% Similarity=-0.101 Sum_probs=111.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV 663 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 663 (813)
...+...|++++|+..+++... ..|+.. .+..+...|...|++++|++.|++..+. .|+ ..+|..++.+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 3445566777888888887765 334333 5566777888889999999999888854 674 88888999999999
Q ss_pred CCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHH-HHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 664 GKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEV-VAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 664 g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
|++++|+..+++. ...|+.+.+|..++..+.+.|++++|.. .++++++++|++ +..+.+.+.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~--~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS--PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC--HHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHhCc
Confidence 9999999988886 5677777789999999999998876555 568999999998 8888888888888775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-08 Score=97.43 Aligned_cols=179 Identities=9% Similarity=-0.029 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHH
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPE--KN----SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI----TFV 618 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~ 618 (813)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|...|++++|+..|+++++. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444555566667777777777776652 22 245666666777777777777777776663 23221 233
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcC
Q 046631 619 AVLSACSY------------------AGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEE 679 (813)
Q Consensus 619 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 679 (813)
.+..++.. .|+.++|...|+++.+. .|+ ...+.....+.. +...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----------~~~~---- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----------LKDR---- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----------HHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----------HHHH----
Confidence 33333332 34555555555555522 343 222211110000 0000
Q ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc---hhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 680 GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP---GYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 680 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
.......++..+...|++++|+..++++++..|++ + ..+..++.+|.+.|++++|.+.++.+...++
T Consensus 146 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 --LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT--QATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC--CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00122456778889999999999999999999986 5 4688899999999999999999999987654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=6.7e-08 Score=101.05 Aligned_cols=266 Identities=10% Similarity=0.003 Sum_probs=132.1
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc------chHH
Q 046631 380 NTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSV----TVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE------GMES 449 (813)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 449 (813)
......+...|++++|...+++.....-..+.. ++..+...+...|+++.|...+....+...... ....
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344456678899999999999988764222222 233334445556666666666655544321111 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC-----C---C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046631 450 YLIDMYAKSGLIKTARQIFEKNDSG-----D---R-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVL 520 (813)
Q Consensus 450 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll 520 (813)
.+...+...|++++|...+++.... . | ....+..+...|...|++++|...+++........
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------- 168 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--------- 168 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---------
Confidence 3444455555555555554432110 0 1 11233334444455555555555555444321110
Q ss_pred HHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC-HhHHH-----HHHHHHH
Q 046631 521 PACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP----EKN-SVTYT-----TMILGYG 590 (813)
Q Consensus 521 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~-----~li~~~~ 590 (813)
+.......+..+...+...|++++|...+++.. .++ ...|. ..+..+.
T Consensus 169 ----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 169 ----------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp ----------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred ----------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 000012234445555555666666665555432 111 11111 1223355
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhcc
Q 046631 591 QHGMSERALSLFRSMKGCGIEPD---AITFVAVLSACSYAGLVDEGLQIFDLMQQEY---KIQPS-TEHYCCVADMLGRV 663 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~ 663 (813)
..|++++|...+++.......+. ...+..+...+...|++++|...+++..... +..++ ...+..+..++...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 66666666666666554321111 2234555566666777777777766654331 21122 23566667777777
Q ss_pred CCHHHHHHHHHHh
Q 046631 664 GKVVEAYEFVKEL 676 (813)
Q Consensus 664 g~~~~A~~~~~~~ 676 (813)
|+.++|...+++.
T Consensus 307 g~~~~A~~~l~~a 319 (373)
T 1hz4_A 307 GRKSDAQRVLLDA 319 (373)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7777777777665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-08 Score=96.54 Aligned_cols=242 Identities=9% Similarity=-0.022 Sum_probs=158.6
Q ss_pred HHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHH
Q 046631 455 YAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQ 534 (813)
Q Consensus 455 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 534 (813)
..-.|.+..++.-...+....++ ..-.-+..+|...|++... ..-.|....+..+..-+ ..+ +..
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~ 87 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIE 87 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCH
T ss_pred HHHhhHHHHHHHHHHhcCccchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHH
Confidence 33456666666644444422222 2222334566666665431 11223332333332222 221 445
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046631 535 LHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-----KNSVTYTTMILGYGQHGMSERALSLFRSMKGCG 609 (813)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 609 (813)
.++.....+ .++...+..+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 555555444 34444556777888889999999999987642 3566788888999999999999999999988
Q ss_pred CCC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCc--
Q 046631 610 IEP-----DAITFVAVLSAC--SYAG--LVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGE-- 678 (813)
Q Consensus 610 ~~p-----~~~~~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 678 (813)
..| +..+...|+.++ ...| +..+|..+|+++... .|+......+..++.+.|++++|.+.++.+..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 577 356667777663 3334 899999999998754 46633344445588999999999999987633
Q ss_pred ---------CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh
Q 046631 679 ---------EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 679 ---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
.|+.+++...++......|+ +|.++++++.+..|++ +..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h--p~i 289 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH--AFI 289 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC--HHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC--hHH
Confidence 37777777666666666787 8899999999999997 544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.8e-09 Score=101.59 Aligned_cols=167 Identities=10% Similarity=-0.017 Sum_probs=131.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-N---SVTYTTMILGYGQHGMSERALSLFRSMKGCGI-EPD-AITFV 618 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~ 618 (813)
+...+-.+...+.+.|++++|...|+++.+ | + ...+..+..+|...|++++|+..|++.++... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445566677778888999999999988763 3 3 56788888899999999999999999988422 112 23566
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHHHHhcCCCCC-hhHH-----------------HHHHHHHhccCCHHHHHHH
Q 046631 619 AVLSACSY--------AGLVDEGLQIFDLMQQEYKIQPS-TEHY-----------------CCVADMLGRVGKVVEAYEF 672 (813)
Q Consensus 619 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 672 (813)
.+..++.. .|++++|...|+++.+. .|+ .... ..++.+|.+.|++++|+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66777777 89999999999999866 454 3333 5678999999999999999
Q ss_pred HHHh-CcCCC---hHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhcCCCCC
Q 046631 673 VKEL-GEEGN---VLEIWGSLLGSCRLH----------GHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 673 ~~~~-~~~~~---~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~ 716 (813)
++++ ...|+ ...++..++.++... |++++|+..++++++..|++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 9987 33343 566888888888866 88999999999999999987
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.9e-10 Score=98.20 Aligned_cols=123 Identities=7% Similarity=-0.031 Sum_probs=105.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 697 (813)
|...+...|++++|+..+.... ...|+ ...+..++.+|.+.|++++|++.+++. ...|+.+.+|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667889999999888776 44564 667778999999999999999999986 677888889999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHH-HHHHHH
Q 046631 698 HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKV-RKEMRE 747 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 747 (813)
++++|+..++++++++|++ +..+..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQ--KDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999887765 577774
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=6.7e-09 Score=104.24 Aligned_cols=202 Identities=13% Similarity=0.034 Sum_probs=145.2
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C--CHhHHHHHHHHHHhcCChHHH
Q 046631 528 NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-------K--NSVTYTTMILGYGQHGMSERA 598 (813)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A 598 (813)
++++|...+... ...|...|++++|.+.|++..+ + ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777766554 4567788999999988886652 1 156889999999999999999
Q ss_pred HHHHHHHHhCCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHH
Q 046631 599 LSLFRSMKGCGI---EPD--AITFVAVLSACSYA-GLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 599 ~~~~~~m~~~g~---~p~--~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 668 (813)
+..+++.++... .+. ..++..+...|... |++++|+..|++..+.+.-..+ ..++..++..|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998876311 111 24788888899986 9999999999998864211111 4578899999999999999
Q ss_pred HHHHHHHhCc-CCCh-------HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh-----HHHHHHHHH--hcC
Q 046631 669 AYEFVKELGE-EGNV-------LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY-----HVLLSNIYA--EEG 733 (813)
Q Consensus 669 A~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-----~~~l~~~~~--~~g 733 (813)
|+..+++... .|+. ...|..++.++...|++++|...++++++++|.. ... +..++..|. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF--ADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--CCcHHHHHHHHHHHHHHcCCHH
Confidence 9999998732 2221 1257788889999999999999999999999986 332 233445554 456
Q ss_pred CcHHHHHHHHHHH
Q 046631 734 NWENVDKVRKEMR 746 (813)
Q Consensus 734 ~~~~A~~~~~~m~ 746 (813)
++++|...++++.
T Consensus 255 ~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 255 QLSEHCKEFDNFM 267 (292)
T ss_dssp THHHHHHHHTTSS
T ss_pred HHHHHHHHhccCC
Confidence 7888888775544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.8e-09 Score=118.54 Aligned_cols=168 Identities=10% Similarity=-0.023 Sum_probs=85.4
Q ss_pred ccCCChHHHHHHHHHHHH-------cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcC
Q 046631 524 NPMGNIELGKQLHGFSIR-------YLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHG 593 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 593 (813)
...|++++|...++...+ ...+.+...+..+...|.+.|++++|.+.|+++. ..+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 455666666666665551 1112233445555555555555555555555544 124455555555555555
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHH
Q 046631 594 MSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYE 671 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 671 (813)
++++|+..|++..+ ..| +...+..+..++...|++++ ...|+++.+. .|+ ...|..++.+|.+.|++++|++
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555 233 23344555555555555555 5555555532 343 4555555555555555555555
Q ss_pred HHHHh-CcCCChHHHHHHHHHHHHHhC
Q 046631 672 FVKEL-GEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 672 ~~~~~-~~~~~~~~~~~~l~~~~~~~g 697 (813)
.++++ ...|+...+|..+..++...+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccC
Confidence 55554 234444445555555544433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-08 Score=101.47 Aligned_cols=163 Identities=9% Similarity=0.012 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-----
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPE-----KN----SVTYTTMILGYGQH-GMSERALSLFRSMKGCGIEPD----- 613 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~----- 613 (813)
.+|+.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence 3455566666666666666666655442 11 34678888888886 9999999999988763 221
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC---h-----hHHHHHHHHHhccCCHHHHHHHHHHhC-cCCCh
Q 046631 614 --AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS---T-----EHYCCVADMLGRVGKVVEAYEFVKELG-EEGNV 682 (813)
Q Consensus 614 --~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 682 (813)
..++..+...+...|++++|+..|++..+. .|+ . ..|..++.++...|++++|+..+++.. ..|..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKS---SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 246778888999999999999999998865 332 2 157788889999999999999999873 34433
Q ss_pred HH-----HHHHHHHHHH--HhCCHHHHHHHHHHHhcCCCCC
Q 046631 683 LE-----IWGSLLGSCR--LHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 683 ~~-----~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.. .+..++.++. ..+++++|+..++++..++|..
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 22 3445556664 3467888999888888877764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-09 Score=106.11 Aligned_cols=225 Identities=13% Similarity=0.034 Sum_probs=161.7
Q ss_pred HhCCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc------CC-CCchhHHHHH
Q 046631 489 TQNGLLEEAFVAFRQMLEH-------NVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY------LL-DQNVFVGTSL 554 (813)
Q Consensus 489 ~~~~~~~~A~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 554 (813)
...|++++|+..|++..+. .......++..+...+...|++++|...+..+.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776552 21223457788889999999999999999988765 22 2345678899
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPE----------K-NSVTYTTMILGYGQHGMSERALSLFRSMKGC------GIEPD-AIT 616 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~ 616 (813)
...|...|++++|.+.|++..+ | ...+|..+...|...|++++|+..++++.+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999988752 1 3567888999999999999999999999984 11333 347
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhc------CCCCC-hhHHHHHHHHHhccC------CHHHHHHHHHHhCc-CCCh
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLMQQEY------KIQPS-TEHYCCVADMLGRVG------KVVEAYEFVKELGE-EGNV 682 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~-~~~~ 682 (813)
+..+...+...|++++|..+++++.+.. ...+. ...+..+...+...+ .+.++...++.... .+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888899999999999999999987641 12332 444555554444333 35555555665543 3455
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 713 (813)
..++..+...+...|++++|...++++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5689999999999999999999999998753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.5e-09 Score=89.33 Aligned_cols=101 Identities=8% Similarity=0.034 Sum_probs=79.4
Q ss_pred CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhH
Q 046631 645 KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 645 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 722 (813)
-+.|+ ...+...+..|.+.|++++|++.|++. ...|..+.+|..++.++...|++++|+..++++++++|++ +..+
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~ 84 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--IKGY 84 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--hHHH
Confidence 45665 667777888888888888888888775 5566666688888888888888888888888888888887 7788
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
..++.+|...|++++|.+.+++..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888888774
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-08 Score=87.43 Aligned_cols=126 Identities=21% Similarity=0.254 Sum_probs=71.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHH
Q 046631 618 VAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRL 695 (813)
Q Consensus 618 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~ 695 (813)
..+...+...|++++|..+++++.+. .| +...+..++..+...|++++|..+++++ ...|....+|..++..+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 33444444555555555555554433 22 2444455555555555555555555554 2223333356666666666
Q ss_pred hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 696 HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 696 ~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.|++++|...++++++..|.+ +..+..++.+|...|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 666666666666666666665 566666667777777777777777666543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.6e-08 Score=90.76 Aligned_cols=173 Identities=9% Similarity=-0.014 Sum_probs=141.5
Q ss_pred HHHHHhhCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHHH
Q 046631 567 AANVFAKIP-EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG----LVDEGLQIFDLMQ 641 (813)
Q Consensus 567 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g----~~~~a~~~~~~~~ 641 (813)
|.+.|++.. ..+..++..|...|...+++++|+..|++..+.| +...+..|...|.. + +.++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444454443 3477888888888888999999999999998865 55677777777777 6 8999999999987
Q ss_pred HhcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHhCcCCCh---HHHHHHHHHHHHH----hCCHHHHHHHHHHHh
Q 046631 642 QEYKIQPSTEHYCCVADMLGR----VGKVVEAYEFVKELGEEGNV---LEIWGSLLGSCRL----HGHSELAEVVAKKLL 710 (813)
Q Consensus 642 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 710 (813)
+. -+...+..|+.+|.. .+++++|++++++....++. +.++..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 54 267888899999987 88999999999999777662 5589999999988 789999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHhc-C-----CcHHHHHHHHHHHHCCC
Q 046631 711 EMDTRNSMPGYHVLLSNIYAEE-G-----NWENVDKVRKEMRERGL 750 (813)
Q Consensus 711 ~~~p~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 750 (813)
+. |.+ +..+..|+.+|... | ++++|..++++..+.|.
T Consensus 157 ~~-~~~--~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRT--GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCT--THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCC--HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 555 67888999998764 3 89999999999987763
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=102.05 Aligned_cols=177 Identities=9% Similarity=-0.007 Sum_probs=138.3
Q ss_pred HHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046631 565 NYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 565 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 643 (813)
+...+.+......+...+..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3344444444445566777788888899999999999999988 4554 457788888899999999999999888643
Q ss_pred cCCCCChhHH-HHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh
Q 046631 644 YKIQPSTEHY-CCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 644 ~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
.|+.... ......+.+.|+.++|+..+++. ...|+...++..+...+...|++++|+..++++++.+|++.....
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 5663333 33334466778888888887775 567877779999999999999999999999999999988644667
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 722 HVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8889999999999999998887765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.6e-08 Score=84.73 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADM 659 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 659 (813)
+|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|..+++++.+. .| +...+..++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 56777888888888888888888888753 335567777888888889999999999888765 34 47778888889
Q ss_pred HhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 660 LGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+...|++++|.+.++++ ...|....+|..++..+...|++++|...++++++.+|.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999988876 334555558888889999999999999999999888775
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.5e-09 Score=94.92 Aligned_cols=158 Identities=11% Similarity=0.023 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYA 627 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 627 (813)
+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..+++.... .|+...+ .+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~------- 78 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SL------- 78 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HH-------
Confidence 34445556666666666666666552 24555556666666666666666666555442 2222211 11
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHH
Q 046631 628 GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADM-LGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVV 705 (813)
Q Consensus 628 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 705 (813)
+... +...+...+|+..+++. ...|+.+..|..+...+...|++++|...
T Consensus 79 ----------------------------~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 79 ----------------------------IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp ----------------------------HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------------HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 1111 01111112344445443 44566666888888888888888888888
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 706 AKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 706 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
++++++.+|+...+..+..++.+|...|+.++|...+++..
T Consensus 131 ~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 131 LWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 88888888875324577888888888999988888887765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-08 Score=94.71 Aligned_cols=122 Identities=14% Similarity=0.012 Sum_probs=67.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 697 (813)
+..++...|++++|+..|++..+. .|+ ...+..++.+|...|++++|+..++++ ...|+.+.+|..++..+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 555666666666666666666643 453 566666666666666666666666664 445555556666666655443
Q ss_pred C--HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 698 H--SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 698 ~--~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+ .+.+...++++....|. ...+..++.++...|++++|...+++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKM---QYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHC---CCCHH---HHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 23344444444332221 12233455556666666666666666663
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=7.9e-09 Score=91.12 Aligned_cols=102 Identities=9% Similarity=-0.052 Sum_probs=93.0
Q ss_pred CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhH
Q 046631 645 KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 645 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 722 (813)
.+.|+ ...+..++..+.+.|++++|+..|+++ ...|+.+..|..++.++...|++++|+..++++++++|++ +..+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~--~~~~ 107 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND--YTPV 107 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC--CHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC--cHHH
Confidence 56775 778889999999999999999999987 5678777799999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..++.+|...|++++|...+++..+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999864
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-07 Score=91.12 Aligned_cols=240 Identities=8% Similarity=0.021 Sum_probs=161.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 046631 486 AGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVIN 565 (813)
Q Consensus 486 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 565 (813)
.-..-.|.+..++.-..++.. .........+.+++...|+.... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 445567888888874333221 12223333445666666655421 11223333344443333 322
Q ss_pred HHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046631 566 YAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 566 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777665 2456667788899999999999999999998765323 34477788889999999999999999998
Q ss_pred HhcCCCC-----ChhHHHHHHHH--Hhc--cCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 046631 642 QEYKIQP-----STEHYCCVADM--LGR--VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM 712 (813)
Q Consensus 642 ~~~~~~p-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 712 (813)
+. .| +-.+...|+.+ ... .+++++|..+|+++...+.....-..|+.++.+.|++++|+..++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55 67 34444555544 333 34999999999999655432112233444888999999999999988776
Q ss_pred ----------CCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 713 ----------DTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 713 ----------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
+|++ +.++..++.+....|+ +|.++++++++..
T Consensus 241 ~p~~~~k~~~~p~~--~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYK--PTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSH--HHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCC--HHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 4777 8888677667777787 8999999999653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.8e-08 Score=92.23 Aligned_cols=157 Identities=11% Similarity=0.053 Sum_probs=118.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCCCC-CH
Q 046631 555 IDMYSKSGVINYAANVFAKIPE--K-NSVTYTT----------------MILGYGQHGMSERALSLFRSMKGCGIEP-DA 614 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 614 (813)
...+...|++++|...|++..+ | +...|.. +..+|...|++++|+..|++.++. .| +.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence 3345566666666666666542 2 3344444 889999999999999999999984 55 45
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCC--HHHHHHHHHHhCcCCChHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGK--VVEAYEFVKELGEEGNVLEIWGSLLG 691 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~l~~ 691 (813)
..+..+...+...|++++|...|++..+. .|+ ..++..++.+|...|. .+.+...++.....+.....|..++.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 68888999999999999999999999855 785 8899999999877664 45566666666433322225666777
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 692 SCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 692 ~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
++...|++++|+..+++++++.|+.
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCH
Confidence 8888899999999999999999974
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-08 Score=111.13 Aligned_cols=159 Identities=9% Similarity=-0.058 Sum_probs=126.5
Q ss_pred cCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 046631 561 SGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQI 636 (813)
Q Consensus 561 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 636 (813)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .| +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998873 36789999999999999999999999999984 45 456888899999999999999999
Q ss_pred HHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh---CCHHHHHHHHHHHhc
Q 046631 637 FDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH---GHSELAEVVAKKLLE 711 (813)
Q Consensus 637 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 711 (813)
+++..+. .|+ ...+..++.+|.+.|++++|.+.+++. ...|+...++..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999865 574 889999999999999999999999986 55676667999999999999 999999999999999
Q ss_pred CCCCCCCchhHHHHH
Q 046631 712 MDTRNSMPGYHVLLS 726 (813)
Q Consensus 712 ~~p~~~~~~~~~~l~ 726 (813)
.+|.+ ...+..++
T Consensus 157 ~~p~~--~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGA--VEPFAFLS 169 (568)
T ss_dssp HTCCC--SCHHHHTT
T ss_pred cCCcc--cChHHHhC
Confidence 99998 67776665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.7e-09 Score=91.40 Aligned_cols=102 Identities=15% Similarity=0.061 Sum_probs=89.5
Q ss_pred CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhH
Q 046631 645 KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 645 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 722 (813)
.+.|+ ...+..++..+.+.|++++|+..++++ ...|+.+..|..++.++...|++++|+..+++++.++|++ +..+
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~ 92 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE--PRFP 92 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--THHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--chHH
Confidence 55664 777888899999999999999999886 5567777789999999999999999999999999999998 8999
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..++.+|...|++++|.+.+++..+.
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998864
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.8e-07 Score=89.64 Aligned_cols=191 Identities=13% Similarity=0.102 Sum_probs=130.3
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHhhCC---CCCHhHHHHHHHHH----Hhc---CChHHHHHHHHHHHhCCCCCCHHHHH
Q 046631 551 GTSLIDMYSKSG--VINYAANVFAKIP---EKNSVTYTTMILGY----GQH---GMSERALSLFRSMKGCGIEPDAITFV 618 (813)
Q Consensus 551 ~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~ 618 (813)
++.--..+...| ++++++++++.+. ..+..+|+.-...+ ... +++++++.+++++.+.. +-+...|.
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~ 148 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWS 148 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 333334444444 5666666666554 22445555544444 344 67788888888888742 33455666
Q ss_pred HHHHHHhccCcHH--HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCC------HHHHHHHHHHh-CcCCChHHHHHH
Q 046631 619 AVLSACSYAGLVD--EGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGK------VVEAYEFVKEL-GEEGNVLEIWGS 688 (813)
Q Consensus 619 ~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~~~~~~~~~~ 688 (813)
.-.-.+.+.|.++ +++++++++.+. .| +...|+.-..++.+.|. ++++++.++++ ...|....+|+.
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y 225 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHH
Confidence 6666666667766 888888888755 45 46777777777777666 78888887765 566766668888
Q ss_pred HHHHHHHhCCH-HHHHHHHHHHhcCC---CCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 689 LLGSCRLHGHS-ELAEVVAKKLLEMD---TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 689 l~~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+...+.+.|+. +....+++++++++ |.+ +..+..++++|.+.|+.++|.++++.+.+
T Consensus 226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTS--SFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888888764 44666778777766 666 77888888999888999999999988875
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-07 Score=91.14 Aligned_cols=183 Identities=15% Similarity=0.022 Sum_probs=132.7
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-H---hHHHH
Q 046631 513 VVTIASVLPACNPMGNIELGKQLHGFSIRYLLD-Q-NVFVGTSLIDMYSKSGVINYAANVFAKIP--EKN-S---VTYTT 584 (813)
Q Consensus 513 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~---~~~~~ 584 (813)
...+..+...+...|++++|...++.+.+.... + ....+..+..+|.+.|++++|...|+++. .|+ . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344556667788899999999999999986422 2 24577888999999999999999999876 232 2 25555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcC
Q 046631 585 MILGYGQ------------------HGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYK 645 (813)
Q Consensus 585 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 645 (813)
+..++.. .|++++|+..|+++++. .|+.. ....... . ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHH-----
Confidence 5666554 57899999999999984 56543 2221111 0 0111111
Q ss_pred CCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCCh---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 646 IQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNV---LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 646 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
......++..|.+.|++++|+..++++ ...|+. ..++..++.++.+.|+.++|...++++....|++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 112345788899999999999999987 333443 3578999999999999999999999999998886
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=5e-08 Score=83.29 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=95.5
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHH
Q 046631 610 IEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIW 686 (813)
Q Consensus 610 ~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 686 (813)
+.|+.. .+......+.+.|++++|++.|++..+. .|+ ...|..++.+|.+.|++++|++.+++. ...|+...+|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 455543 5677778888999999999999988854 674 888899999999999999999998886 5567777799
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 687 GSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
..++.++...|++++|+..++++++++|++ +..+..|+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~--~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSN--EEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCC--HHHHHHHHHh
Confidence 999999999999999999999999999998 7777766654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=9.3e-08 Score=106.17 Aligned_cols=157 Identities=10% Similarity=-0.051 Sum_probs=99.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 046631 526 MGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLF 602 (813)
Q Consensus 526 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 602 (813)
.|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777777777766542 23456777778888888888888888877653 35677888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc---CCHHHHHHHHHHh-C
Q 046631 603 RSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV---GKVVEAYEFVKEL-G 677 (813)
Q Consensus 603 ~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~ 677 (813)
++..+.. +.+...+..+..++...|++++|.+.+++..+. .|+ ...+..++.++... |++++|.+.+++. .
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 8887742 223457777777888888888888888887754 454 67777788888888 8888888887775 3
Q ss_pred cCCChHHHHH
Q 046631 678 EEGNVLEIWG 687 (813)
Q Consensus 678 ~~~~~~~~~~ 687 (813)
..|.....|.
T Consensus 157 ~~p~~~~~~~ 166 (568)
T 2vsy_A 157 QGVGAVEPFA 166 (568)
T ss_dssp HTCCCSCHHH
T ss_pred cCCcccChHH
Confidence 3343332343
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-07 Score=95.48 Aligned_cols=221 Identities=10% Similarity=-0.000 Sum_probs=148.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046631 492 GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVF 571 (813)
Q Consensus 492 ~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (813)
|++++|.+++++..+.. +.. .+...++++.|...+..+ ...|...|++++|...|
T Consensus 5 ~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 55667777777665431 110 011145666666665443 44566777877777777
Q ss_pred hhCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHhccCcHHHHHHHH
Q 046631 572 AKIPE-----KN----SVTYTTMILGYGQHGMSERALSLFRSMKGCGI---EPD--AITFVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 572 ~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~a~~~~g~~~~a~~~~ 637 (813)
.+..+ .+ ..+|+.+...|...|++++|+..|++.++.-. .+. ..++..+...|.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 66542 11 45788888899999999999999998765311 122 2467778888888 9999999999
Q ss_pred HHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhC----cCCC---hHHHHHHHHHHHHHhCCHHHHHHHH
Q 046631 638 DLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELG----EEGN---VLEIWGSLLGSCRLHGHSELAEVVA 706 (813)
Q Consensus 638 ~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 706 (813)
++..+.+.-..+ ..++..++.+|.+.|++++|++.+++.. ..+. ....+..++.++...|++++|...+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988754211111 5678899999999999999999998862 2222 2236677777888889999999999
Q ss_pred HHHhcCCCCCCCch---hHHHHHHHHHhcCCcHHHHH
Q 046631 707 KKLLEMDTRNSMPG---YHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 707 ~~~~~~~p~~~~~~---~~~~l~~~~~~~g~~~~A~~ 740 (813)
++++ +.|...... ....++..+ ..|+.+.+.+
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999 988752121 122344444 5677665555
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-07 Score=106.54 Aligned_cols=168 Identities=9% Similarity=-0.052 Sum_probs=111.1
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Q 046631 559 SKSGVINYAANVFAKIP-----------EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSY 626 (813)
Q Consensus 559 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~ 626 (813)
...|++++|.+.|++.. ..+...|..+...|...|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 55677777777776654 234566777777777777777777777777763 33 34466666667777
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHH
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEV 704 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 704 (813)
.|++++|...|+++.+. .|+ ...+..++.+|.+.|++++ ++.++++ ...|+...+|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777643 563 6667777777777777777 7666665 4456555577777777777777777777
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 705 VAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 705 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
.++++++++|++ +..+..++.+|...|+
T Consensus 556 ~~~~al~l~P~~--~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHF--TTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTH--HHHHHHHHHHTC----
T ss_pred HHHhhcccCccc--HHHHHHHHHHHHccCC
Confidence 777777777776 6666667666655443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=8.8e-07 Score=88.76 Aligned_cols=166 Identities=6% Similarity=-0.054 Sum_probs=125.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhH
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGI-EPDAI----TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEH 652 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 652 (813)
+...+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.+...-.++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33446778889999999999999887422 22211 2334566677788999999999999874222223 347
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhC-------cC-CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC----CCch
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKELG-------EE-GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN----SMPG 720 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~ 720 (813)
++.++.+|...|++++|+..++++. .. +....++..++..|...|++++|...+++++++.+.. ..+.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8999999999999999999998863 11 1233478999999999999999999999998765332 1145
Q ss_pred hHHHHHHHHHhcCC-cHHHHHHHHHHHH
Q 046631 721 YHVLLSNIYAEEGN-WENVDKVRKEMRE 747 (813)
Q Consensus 721 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 747 (813)
.+..+|.+|.+.|+ +++|.+.+++..+
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 78889999999995 6999999988864
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.2e-07 Score=88.19 Aligned_cols=129 Identities=12% Similarity=-0.025 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVAD 658 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 658 (813)
..+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|...+++..+. .|+ ...+..++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 34455566666677777777776665 2455666666666666777777777777666643 343 566666666
Q ss_pred HHhccCCHHHHHHHHHHhC-cCCCh----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 659 MLGRVGKVVEAYEFVKELG-EEGNV----------------LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~~-~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+|.+.|++++|++.+++.. ..|.. ..+|..++.++...|++++|...+++++++.|+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 6666666666666666652 22221 135666666666666666666666666666654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.8e-08 Score=96.45 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=149.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 046631 526 MGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSM 605 (813)
Q Consensus 526 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (813)
.|++++|..++++..+..-. . .+...+++++|...|.. ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 46778888888877664211 1 11115788888887654 467888999999999999988
Q ss_pred HhCCC---CC-C-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC--CC--hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 606 KGCGI---EP-D-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQ--PS--TEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 606 ~~~g~---~p-~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
.+... .+ . ..+|..+...|...|++++|+..|++..+.+.-. |. ..++..++.+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 76311 11 1 2378888889999999999999999887553111 21 5678899999999 9999999999886
Q ss_pred C----cCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC----chhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 677 G----EEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM----PGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 677 ~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
. ..++ ...++..+...+...|++++|+..+++++++.|.... ...+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 2222 2347889999999999999999999999988765411 125666778888899999999999998
Q ss_pred H
Q 046631 746 R 746 (813)
Q Consensus 746 ~ 746 (813)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 8
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=8.7e-08 Score=84.06 Aligned_cols=102 Identities=14% Similarity=0.026 Sum_probs=88.3
Q ss_pred CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhH
Q 046631 645 KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 645 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 722 (813)
.+.|+ ...+..++..+.+.|++++|+..++++ ...|+.+.+|..+..++...|++++|+..++++++++|++ +..+
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~ 89 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE--PRFP 89 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--THHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--cHHH
Confidence 44564 667777888899999999999998886 5667777789999999999999999999999999999998 8999
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..++.+|...|++++|.+.+++..+.
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988854
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-07 Score=86.03 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=99.3
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHH-HHhc
Q 046631 516 IASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--KNSVTYTTMILG-YGQH 592 (813)
Q Consensus 516 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~ 592 (813)
+......+...|++++|...++...+.. +.+...+..+..+|.+.|++++|...|+++.. |+...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 4456667888999999999999876643 23567888999999999999999999999874 344333222211 1222
Q ss_pred CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhccCCHHH
Q 046631 593 GMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS---TEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~ 668 (813)
++..+|+..+++..+ ..|+ ...+..+...+...|++++|...|+++.+ ..|+ ...+..++.++...|+.++
T Consensus 88 ~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 88 AAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred cccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCCc
Confidence 233345666666665 3343 44556666666666666666666666653 3443 3455666666666666666
Q ss_pred HHHHHHH
Q 046631 669 AYEFVKE 675 (813)
Q Consensus 669 A~~~~~~ 675 (813)
|...+++
T Consensus 163 A~~~y~~ 169 (176)
T 2r5s_A 163 IASKYRR 169 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.8e-07 Score=90.68 Aligned_cols=168 Identities=6% Similarity=-0.091 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCC--h
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA-----ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKI--QPS--T 650 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 650 (813)
..+...+..+...|++++|++.+++..+....... ..+..+...+...|++++|...+++..+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34556677888899999999999888875322111 12334555677889999999999988753111 112 4
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhC----cCCC----hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC----CC
Q 046631 651 EHYCCVADMLGRVGKVVEAYEFVKELG----EEGN----VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN----SM 718 (813)
Q Consensus 651 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~ 718 (813)
.+++.++..|...|++++|+..++++. ..++ ...++..++..|...|++++|...+++++++.+.. ..
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 588899999999999999999998863 2232 22488999999999999999999999998764321 11
Q ss_pred chhHHHHHHHHHhcCCcHHH-HHHHHHHHH
Q 046631 719 PGYHVLLSNIYAEEGNWENV-DKVRKEMRE 747 (813)
Q Consensus 719 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 747 (813)
+..+..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45678899999999999999 777887764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-07 Score=93.24 Aligned_cols=159 Identities=12% Similarity=-0.016 Sum_probs=113.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-H
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVL-S 622 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~ 622 (813)
+...+..+...+.+.|++++|...|+++. .| +...+..+...+...|++++|+..++++.. ..|+........ .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHH
Confidence 44455666677777888888888887765 23 567777888888888888888888887766 345544332222 2
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCCh--HHHHHHHHHHHHHhCC
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNV--LEIWGSLLGSCRLHGH 698 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~--~~~~~~l~~~~~~~g~ 698 (813)
.+...+..++|...+++.... .|+ ...+..++.+|...|++++|++.+.++ ...|+. ..++..++..+...|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 355666677778878777754 564 778888888888888888888888776 444544 4578888888888888
Q ss_pred HHHHHHHHHHHh
Q 046631 699 SELAEVVAKKLL 710 (813)
Q Consensus 699 ~~~a~~~~~~~~ 710 (813)
.++|...+++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888888877765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.7e-07 Score=84.54 Aligned_cols=174 Identities=10% Similarity=-0.110 Sum_probs=131.9
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-KNSVTYTTMILGYGQHG----MSERALSLFRSMK 606 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 606 (813)
|...+....+.| ++..+..|...|...+++++|.+.|++..+ .+..++..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444455555443 556677777778888888888888887663 467778888888777 6 8899999999988
Q ss_pred hCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhc----cCCHHHHHHHHHH
Q 046631 607 GCGIEPDAITFVAVLSACSY----AGLVDEGLQIFDLMQQEYKIQPS---TEHYCCVADMLGR----VGKVVEAYEFVKE 675 (813)
Q Consensus 607 ~~g~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 675 (813)
+.| +...+..|...|.. .+++++|..+|++..+. .|. +..+..|+.+|.. .+++++|+.++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 755 55677777777776 78999999999888743 453 7888889999988 8899999999999
Q ss_pred hCcCCChHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHhcCCCC
Q 046631 676 LGEEGNVLEIWGSLLGSCRLH-G-----HSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 676 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 715 (813)
....+..+..+..|...|... | +.++|...++++.+.+..
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 866543444788888887653 3 899999999999887643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-05 Score=82.76 Aligned_cols=124 Identities=17% Similarity=0.097 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACS-YAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVA 657 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 657 (813)
..|...+..+.+.++.+.|..+|++. .. ...+...|...+..-. ..++.+.|..+|+...+.+ |+ ...+...+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~---~~~~~~~~~yi 361 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH---PDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---CCCHHHHHHHH
Confidence 56777777777888899999999998 32 1234444443222222 2336899999999998874 43 45566778
Q ss_pred HHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 658 DMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
+...+.|+.+.|..+++++.. ...+|...+..-..+|+.+.+..++++...
T Consensus 362 d~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888899999999999999842 334899988888889999999888888764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-07 Score=79.40 Aligned_cols=97 Identities=8% Similarity=-0.093 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
...+..++..+.+.|++++|+..+++. ...|+.+.+|..++.++...|++++|+..++++++++|++ +..+..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHH
Confidence 456777888888999999999888876 4566666689999999999999999999999999999998 8899999999
Q ss_pred HHhcCCcHHHHHHHHHHHHC
Q 046631 729 YAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 729 ~~~~g~~~~A~~~~~~m~~~ 748 (813)
|...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999988854
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.64 E-value=4.7e-07 Score=81.73 Aligned_cols=127 Identities=9% Similarity=-0.022 Sum_probs=101.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSC 693 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~ 693 (813)
.+..+...+...|++++|...|++..+. .| +...+..++.++...|++++|++.+++. ...|....+|..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4566666777888888888888887754 45 4777888888888888999988888776 44566666899999999
Q ss_pred HHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH--HHHHHhcCCcHHHHHHHHHHHH
Q 046631 694 RLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL--SNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 694 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
...|++++|...++++++..|.+ ...+..+ +..+...|++++|.+.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHD--KDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988 6666444 4448888999999999887754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-06 Score=83.37 Aligned_cols=125 Identities=10% Similarity=-0.066 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLV 630 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 630 (813)
+..+...+...|++++|.+.|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556667777777777777777777777777777777777777777777777777642 23445677777777777777
Q ss_pred HHHHHHHHHHHHhcC-------------CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 631 DEGLQIFDLMQQEYK-------------IQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 631 ~~a~~~~~~~~~~~~-------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
++|...|++..+... ..|+ ...+..++.+|.+.|++++|.+.+++.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777765311 1111 266777777777777777777777775
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-07 Score=85.13 Aligned_cols=120 Identities=11% Similarity=0.125 Sum_probs=90.0
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH-HHHhCCH--
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS-CRLHGHS-- 699 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~-~~~~g~~-- 699 (813)
...|++++|...+++..+. .| +...+..++.+|...|++++|+..++++ ...|+.+.+|..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567777788888777754 45 4777888888888888888888888776 3445555577778877 6777887
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 700 ELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 700 ~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
++|...++++++.+|.+ +..+..++.+|...|++++|...++++.+..
T Consensus 98 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNE--ITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888887 7888888888888888888888888887653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.6e-06 Score=81.45 Aligned_cols=226 Identities=9% Similarity=-0.010 Sum_probs=159.5
Q ss_pred CHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHH
Q 046631 460 LIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNG--LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLH 536 (813)
Q Consensus 460 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 536 (813)
..++|++.++.+....| +...|+.--..+...+ +++++++.++.+...+ |...+
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~--------------------- 104 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQ--------------------- 104 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCH---------------------
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHH---------------------
Confidence 33566666666554455 4556777766676666 7777777777777642 33222
Q ss_pred HHHHHcCCCCchhHHHHHHHHH----Hhc---CCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChH--HHHHHHHH
Q 046631 537 GFSIRYLLDQNVFVGTSLIDMY----SKS---GVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSE--RALSLFRS 604 (813)
Q Consensus 537 ~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~ 604 (813)
+|+.-...+ .+. +++++++++++++. .+|..+|+.-...+.+.|.++ ++++.+++
T Consensus 105 -------------aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~ 171 (306)
T 3dra_A 105 -------------IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDK 171 (306)
T ss_dssp -------------HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 122221122 223 67788888888776 347778888888888888888 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCc------HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHH-HHHHHHHh
Q 046631 605 MKGCGIEPDAITFVAVLSACSYAGL------VDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVE-AYEFVKEL 676 (813)
Q Consensus 605 m~~~g~~p~~~~~~~ll~a~~~~g~------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~ 676 (813)
+++.. .-|...|+.-.....+.|. ++++++.++.++.. .| |...|+.+..++.+.|+..+ +.++.+++
T Consensus 172 ~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 172 VIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 99854 3345566666556666665 89999999998855 67 58889999999998887444 55677775
Q ss_pred Cc----CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc-CCCCCCCchhHHHHHH
Q 046631 677 GE----EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE-MDTRNSMPGYHVLLSN 727 (813)
Q Consensus 677 ~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~~~l~~ 727 (813)
.. .+..+.++..++..+.+.|+.++|.++++.+.+ .+|.. ..++...+.
T Consensus 248 ~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir--~~yW~~~~~ 301 (306)
T 3dra_A 248 VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIR--SNFWDYQIS 301 (306)
T ss_dssp EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG--HHHHHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHH--HHHHHHHHh
Confidence 32 244555899999999999999999999999996 79987 777665543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.8e-06 Score=82.72 Aligned_cols=160 Identities=11% Similarity=-0.044 Sum_probs=121.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-----C----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHH
Q 046631 553 SLIDMYSKSGVINYAANVFAKIPEK-----N----SVTYTTMILGYGQHGMSERALSLFRSMKGCGIE-PD----AITFV 618 (813)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~ 618 (813)
..+..+...|++++|..++++..+. + ...+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788899999999999886531 1 113344666777788999999999999984322 22 22688
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcC----CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC-------cCCChHHHH
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYK----IQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG-------EEGNVLEIW 686 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ 686 (813)
.+...|...|++++|..+++++.+... ..+. ..++..++.+|.+.|++++|++.+++.. .......+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888899999999999999999885321 1122 5588899999999999999999988751 223345589
Q ss_pred HHHHHHHHHhC-CHHHHHHHHHHHhcC
Q 046631 687 GSLLGSCRLHG-HSELAEVVAKKLLEM 712 (813)
Q Consensus 687 ~~l~~~~~~~g-~~~~a~~~~~~~~~~ 712 (813)
..++.++...| ++++|...+++++.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999 569999999988754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=4e-07 Score=78.53 Aligned_cols=115 Identities=13% Similarity=0.046 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
..+..+...+...|++++|...+++.. ...| +...+..++.+|...|++++|++.++++ ...|....+|..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 355556666666666666666666665 3344 3666666777777777777777776665 3345555577777888
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
+...|++++|...++++++.+|.+ ...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSC--KEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGG--THHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhcC
Confidence 888888888888888888888877 7777777777766553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=83.46 Aligned_cols=118 Identities=10% Similarity=-0.022 Sum_probs=94.1
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-C
Q 046631 601 LFRSMKGCGIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-G 677 (813)
Q Consensus 601 ~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 677 (813)
.|+++.. +.|+. ..+..+...+...|++++|...|++.... .| +...|..++.+|...|++++|++.++++ .
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444 44543 35667777888899999999999988854 56 4888889999999999999999999886 4
Q ss_pred cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 678 EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
..|+.+.+|..++.++...|++++|+..+++++++.|++ +......
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~ 129 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX--PEFXELS 129 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC--GGGHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC--CcchHHH
Confidence 567666689999999999999999999999999999987 6664443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.4e-07 Score=85.58 Aligned_cols=184 Identities=9% Similarity=-0.037 Sum_probs=138.1
Q ss_pred hcCCHHHHHHHHhhCC--CC-CHhHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCCH---------------
Q 046631 560 KSGVINYAANVFAKIP--EK-NSVTYTTM-------ILGYGQHGMSERALSLFRSMKGCGIEPDA--------------- 614 (813)
Q Consensus 560 ~~g~~~~A~~~~~~~~--~~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 614 (813)
..++...|.+.|.++. .| ....|..+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 5788888999988877 33 56788887 5666666667777776666554 23321
Q ss_pred -------HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCCh---HH
Q 046631 615 -------ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNV---LE 684 (813)
Q Consensus 615 -------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 684 (813)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..++.....++. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1234466678889999999999987763 3575337777888899999999999999877655433 23
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCC--CCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMD--TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
++..++.++...|++++|+..++++.... |.. .+.....++.++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 78889999999999999999999998543 331 14567788999999999999999999998653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=6.8e-07 Score=76.69 Aligned_cols=116 Identities=13% Similarity=0.070 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
..+..+...+...|++++|...+++..+. .| +...+..++.++...|++++|++.+++. ...|+...+|..++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 35666666777777888888877777754 34 4677777888888888888888887775 3455555688888888
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCc
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW 735 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 735 (813)
+...|++++|...++++++..|++ +..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDN--ETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHHhcC
Confidence 888899999999999998888887 78888888888887765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-07 Score=94.57 Aligned_cols=144 Identities=15% Similarity=0.006 Sum_probs=104.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCV 656 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 656 (813)
+...|..+...|.+.|++++|+..|++.++. .|+...+ ..+++..+ .| ....|..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~----------~~~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA----------QALRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH----------HHHHHHHHHHH
Confidence 3456666666666666666666666666663 2322100 00111100 01 14678888
Q ss_pred HHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCc
Q 046631 657 ADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW 735 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 735 (813)
+.+|.+.|++++|+..++++ ...|+...+|..+..++...|++++|+..++++++++|++ +..+..++.++.+.|++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN--KAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHH
Confidence 88999999999999888886 5566666799999999999999999999999999999998 88999999999999999
Q ss_pred HHH-HHHHHHHH
Q 046631 736 ENV-DKVRKEMR 746 (813)
Q Consensus 736 ~~A-~~~~~~m~ 746 (813)
++| ..++++|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988 44666664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=6.2e-07 Score=78.88 Aligned_cols=104 Identities=9% Similarity=-0.059 Sum_probs=91.3
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHH
Q 046631 610 IEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIW 686 (813)
Q Consensus 610 ~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 686 (813)
+.|+.. .+..+...+.+.|++++|...|+++.+. .|+ ...|..++.+|.+.|++++|++.|++. ...|+.+.+|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 445443 6777788899999999999999999855 785 889999999999999999999999887 5677777799
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 687 GSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..++.++...|++++|+..+++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999985
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-07 Score=74.91 Aligned_cols=102 Identities=9% Similarity=-0.013 Sum_probs=88.2
Q ss_pred CCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC--CCCchhH
Q 046631 647 QPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR--NSMPGYH 722 (813)
Q Consensus 647 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~ 722 (813)
.|+ ...+..++..+.+.|++++|...+++. ...|....+|..++..+...|++++|...++++++..|. + +..+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN--KDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC--HHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch--HHHH
Confidence 353 677888899999999999999998886 445666668999999999999999999999999999998 7 8889
Q ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHHCCC
Q 046631 723 VLLSNIYAEE-GNWENVDKVRKEMRERGL 750 (813)
Q Consensus 723 ~~l~~~~~~~-g~~~~A~~~~~~m~~~~~ 750 (813)
..++.+|... |++++|.+.+++..+...
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999999 999999999999986643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-06 Score=74.38 Aligned_cols=114 Identities=21% Similarity=0.247 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
..+..+...+...|++++|..+++++.+. .| +...+..++.++.+.|++++|..+++++ ...|....+|..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 45666666777777777777777777654 34 3667777777788888888888777775 3344445578888888
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG 733 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 733 (813)
+...|++++|...++++++..|.+ +..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNN--AEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhcc
Confidence 888888888888888888888887 777777777765543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-07 Score=92.20 Aligned_cols=191 Identities=13% Similarity=-0.000 Sum_probs=131.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLS 622 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 622 (813)
+...+..+...+.+.|++++|...|++.. .| +...|..+..+|...|++++|+..+++.++. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34556777788888999999999988775 33 7788889999999999999999999998884 454 557788888
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (813)
++...|++++|...|++..+. .|+ ...+...+....+.++...... .... ..+....+...+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEER-RIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHT-CCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHH-HHhhhHHHHHHHHHH--HHHHHHH
Confidence 899999999999999888754 332 1111112222221111111111 1111 223233244444332 2688999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhc-CCcHHHHHHHHHHHHC
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE-GNWENVDKVRKEMRER 748 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 748 (813)
|.+.++++++.+|++ ......+..++.+. +++++|.++|+++.+.
T Consensus 154 A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDD--GHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCH--HHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccch--hhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999987 66666677777766 7789999999988764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-07 Score=77.64 Aligned_cols=96 Identities=16% Similarity=0.056 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 651 EHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 651 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
..+..++..+.+.|++++|+..+++. ...|+...+|..++.++...|++++|+..++++++++|++ +..+..++.+|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 34566778888899999999988886 5567777789999999999999999999999999999998 88889999999
Q ss_pred HhcCCcHHHHHHHHHHHHC
Q 046631 730 AEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 730 ~~~g~~~~A~~~~~~m~~~ 748 (813)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988854
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-05 Score=80.09 Aligned_cols=220 Identities=10% Similarity=0.022 Sum_probs=137.8
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHH
Q 046631 487 GYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSG-VIN 565 (813)
Q Consensus 487 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 565 (813)
...+.+..++|++++.+++.. .|+..| +++.--..+...| .++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~yt----------------------------------aWn~R~~iL~~l~~~l~ 106 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYT----------------------------------VWQYRFSLLTSLNKSLE 106 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHH----------------------------------HHHHHHHHHHHTTCCHH
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHH----------------------------------HHHHHHHHHHHhhhhHH
Confidence 334445556777777777764 454433 2333333333444 366
Q ss_pred HHHHHHhhCC---CCCHhHHHHHHHHHHhc-C-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH--------H
Q 046631 566 YAANVFAKIP---EKNSVTYTTMILGYGQH-G-MSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVD--------E 632 (813)
Q Consensus 566 ~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~--------~ 632 (813)
+++++++.+. .++..+|+.-...+... + ++++++++++++.+.. .-|...|+.-...+.+.|.++ +
T Consensus 107 eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 107 DELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 6666666554 23555666665555555 5 6777777777777642 223445544444444444444 7
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCC-------HHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCH----
Q 046631 633 GLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGK-------VVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHS---- 699 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~---- 699 (813)
++++++++.+. .| |...|+....++.+.+. ++++++.++++ ...|+...+|+.+.+.+.+.|+.
T Consensus 186 ELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 186 ELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 88888888865 55 57788888888887776 68888888765 56776666898888888877653
Q ss_pred ----------------HHHHHHHHHHhcCC------CCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 700 ----------------ELAEVVAKKLLEMD------TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 700 ----------------~~a~~~~~~~~~~~------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.........++... +.. +....+|+++|.+.|+.++|.++++.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV--PLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 23333444443332 233 667889999999999999999999998743
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.4e-06 Score=80.02 Aligned_cols=156 Identities=12% Similarity=-0.045 Sum_probs=97.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCC-ChhHHHHHHHHHhccCCH
Q 046631 591 QHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEY---KIQP-STEHYCCVADMLGRVGKV 666 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~ 666 (813)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+.. +..| ....+..++.+|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644443321 11233456666666667777777777776665421 1122 255677777788888888
Q ss_pred HHHHHHHHHhC----cCC----ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC----CchhHHHHHHHHHhcCC
Q 046631 667 VEAYEFVKELG----EEG----NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS----MPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 667 ~~A~~~~~~~~----~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~ 734 (813)
++|.+.+++.. ..+ ....++..+...+...|++++|...++++++..+... ....+..++.+|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 88887776641 122 1233677788888888888888888888875432210 02235678888999999
Q ss_pred cHHHHHHHHHHHH
Q 046631 735 WENVDKVRKEMRE 747 (813)
Q Consensus 735 ~~~A~~~~~~m~~ 747 (813)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-05 Score=84.07 Aligned_cols=374 Identities=10% Similarity=0.014 Sum_probs=190.3
Q ss_pred C-ChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCC-ChhHHHHHHHH
Q 046631 174 S-KYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLG-DYKSADVVYGL 251 (813)
Q Consensus 174 g-~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~ 251 (813)
| +++.|+.+|+.+.. .+-. |+++.+..+|++.... .|+...|..-+....+.+ ..+....+|+.
T Consensus 8 ~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 8 GVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ----CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred CcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6 47788888776532 1111 7889999999988773 578888877777665544 23556777877
Q ss_pred HHHh-CCCCCCcHHHHHHHHHHHH----hcCChHHHHHHHhhcCCCCcchHHHHHHHHH---hCCCchHHHHHHHHHHHh
Q 046631 252 LVKL-GSEYVNDLFVASSAIFMYA----ELGCFDFARKIFDNCLERNTEVWNTMIGGYV---QNNHPVEAIELFVQVLEL 323 (813)
Q Consensus 252 ~~~~-~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~m~~ 323 (813)
++.. |.. ..+...|...+..+. ..|+++.++++|++...-....+..+-..|. +..+...+..++.+.
T Consensus 74 al~~vg~d-~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~--- 149 (493)
T 2uy1_A 74 TLGQFENY-WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT--- 149 (493)
T ss_dssp HHHHSTTC-TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH---
T ss_pred HHHHcCCC-cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH---
Confidence 7765 433 135677777777654 3467888888888775421111222211111 111122222222110
Q ss_pred CCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCC--C-----cHHHH
Q 046631 324 DEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNG--L-----DDEGL 396 (813)
Q Consensus 324 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~ 396 (813)
...+..|+.++..+..... ..+...|...+.--...+ - .+.+.
T Consensus 150 -------------------~~~y~~ar~~y~~~~~~~~-----------~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~ 199 (493)
T 2uy1_A 150 -------------------LPIFQSSFQRYQQIQPLIR-----------GWSVKNAARLIDLEMENGMKLGGRPHESRMH 199 (493)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHH-----------TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHH
T ss_pred -------------------hHHHHHHHHHHHHHHHHHh-----------hccHHHHHHHHHHHhcCCccCcchhhHHHHH
Confidence 1223344444444433110 012334544444322211 1 23466
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHH-HHHHhhcCCCC
Q 046631 397 MLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTA-RQIFEKNDSGD 475 (813)
Q Consensus 397 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 475 (813)
.+|+++... .+.+...|...+.-+...|+.+.|..+++..++. +....++. .|+.....++. ..+.+......
T Consensus 200 ~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 200 FIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH----HHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhc
Confidence 788887775 3445667777777778888999999999998888 33223322 22222111111 11111110000
Q ss_pred -------C---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHhccCCChHHHHHHHHHHHHcC
Q 046631 476 -------R---DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIAS--VLPACNPMGNIELGKQLHGFSIRYL 543 (813)
Q Consensus 476 -------~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~ 543 (813)
+ ....|...+....+.+..+.|..+|.+. ... ..+...|.. .+... ..++.+.|..+++...+..
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC
Confidence 0 1234555566555666677777777776 211 122223321 11111 1224666666666666542
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046631 544 LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMK 606 (813)
Q Consensus 544 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (813)
..+...+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++.
T Consensus 351 -~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 351 -PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1123344445555566666666666666653 234455555555455555555555555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.8e-07 Score=77.28 Aligned_cols=98 Identities=4% Similarity=-0.086 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-----chhHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-----PGYHV 723 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~~ 723 (813)
...+..++..+.+.|++++|++.|++. ...|+.+.+|..++.++...|++++|+..++++++++|++.. ...|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 445667888888888888888888875 556766668888888888888888888888888888776511 12566
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 724 LLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 724 ~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
.+|.+|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 678888888999999998888774
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.4e-06 Score=71.60 Aligned_cols=93 Identities=10% Similarity=-0.020 Sum_probs=47.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
.+..++..+...|++++|...+++. ...|..+.+|..++..+...|++++|...++++++..|.+ +..+..++.+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHHHHHHH
Confidence 3444444555555555555555443 2233333345555555555555555555555555555554 455555555555
Q ss_pred hcCCcHHHHHHHHHHH
Q 046631 731 EEGNWENVDKVRKEMR 746 (813)
Q Consensus 731 ~~g~~~~A~~~~~~m~ 746 (813)
..|++++|.+.+++..
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555555554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-06 Score=78.47 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhCc-------------------CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELGE-------------------EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLL 710 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 710 (813)
...+...+..+.+.|++++|+..|++... .|....+|..+..++.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34455566666666666666666665421 34444589999999999999999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEEEEEecCCCCCCChH-HHHHHHHHHH
Q 046631 711 EMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSH-KIYEMLERLA 789 (813)
Q Consensus 711 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~ 789 (813)
+++|.+ +..+..++.+|...|++++|...+++..+. +|... .+...+..+.
T Consensus 91 ~~~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------------------~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 91 KREETN--EKALFRRAKARIAAWKLDEAEEDLKLLLRN--------------------------HPAAASVVAREMKIVT 142 (162)
T ss_dssp HHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CGGGHHHHHHHHHHHH
T ss_pred hcCCcc--hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHH
Confidence 999998 999999999999999999999999998853 34444 5666777766
Q ss_pred HHHHH
Q 046631 790 MEMRN 794 (813)
Q Consensus 790 ~~~~~ 794 (813)
.++.+
T Consensus 143 ~~~~~ 147 (162)
T 3rkv_A 143 ERRAE 147 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-06 Score=79.35 Aligned_cols=130 Identities=9% Similarity=0.106 Sum_probs=103.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH-HhccCCH-
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADM-LGRVGKV- 666 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 666 (813)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 35678888988998888742 345567888888999999999999999998865 45 47788888888 7789998
Q ss_pred -HHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 667 -VEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 667 -~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
++|...++++ ...|+...+|..+...+...|++++|...++++++..|.+ +....++
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR--INRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT--SCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--ccHHHHH
Confidence 9999999886 4566666689999999999999999999999999999997 5544433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-05 Score=79.20 Aligned_cols=163 Identities=11% Similarity=-0.058 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CC------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HH
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPE---KN------SVTYTTMILGYGQHGMSERALSLFRSMKGCGI---EPD--AI 615 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 615 (813)
.+...+..+...|++++|.+.+++..+ .. ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 345567778889999999988875431 11 12344466667788999999999999886421 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCCHHHHHHHHHHhCc-------CCChH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-----TEHYCCVADMLGRVGKVVEAYEFVKELGE-------EGNVL 683 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~ 683 (813)
+++.+...|...|++++|..+++++.+.....|+ ..++..++.+|.+.|++++|++.+++... .....
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999998743222333 26888999999999999999999887521 11234
Q ss_pred HHHHHHHHHHHHhCCHHHH-HHHHHHHhcC
Q 046631 684 EIWGSLLGSCRLHGHSELA-EVVAKKLLEM 712 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 712 (813)
.+|..++.++...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5889999999999999999 7778877653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=76.80 Aligned_cols=106 Identities=13% Similarity=-0.027 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSC 693 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~ 693 (813)
.+..+...+...|++++|...|+++... .| +...|..++.+|.+.|++++|+..+++. ...|+.+.+|..++.++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4556666778888888998888888754 56 4778888888999999999999988886 45666666888999999
Q ss_pred HHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 046631 694 RLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLS 726 (813)
Q Consensus 694 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~ 726 (813)
...|++++|...+++++++.|++ +.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQ--PAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTC--GGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC--cchHHHHH
Confidence 99999999999999999999987 76655543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-06 Score=78.96 Aligned_cols=107 Identities=10% Similarity=-0.040 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHH
Q 046631 614 AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLG 691 (813)
Q Consensus 614 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~ 691 (813)
...+..+...+...|++++|+..|++..+. .| +...|..++.+|.+.|++++|+..+++. ...|+...+|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 346667777778888888888888887754 46 4777788888888888888888887775 455665667888888
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 692 SCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 692 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
++...|++++|+..++++++++|++ +..+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNG--GSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSS--CCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCc--hHHHHHH
Confidence 8888888888888888888888877 5544433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-06 Score=74.88 Aligned_cols=99 Identities=14% Similarity=0.003 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSN 727 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~ 727 (813)
+...+..++..+...|++++|+..+++. ...|+.+.+|..++.++...|++++|...++++++++|++ +..+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHHHHH
Confidence 4778888888899999999999888875 4566666689999999999999999999999999999998 888999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHCC
Q 046631 728 IYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
+|...|++++|...+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999999999888653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.9e-06 Score=81.89 Aligned_cols=130 Identities=9% Similarity=-0.052 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHH
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADM 659 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 659 (813)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..++.+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566777788888888888777763 455444445555677888888888888754321 0 111 3367778888
Q ss_pred HhccCCHHHHHHHHHHhCcCCC----hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 660 LGRVGKVVEAYEFVKELGEEGN----VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+.+.|++++|+..+++....+. .++.+..+..++.+.|+.++|...+++++..+|+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 8888999999888888743332 4557888888889999999999999999888886
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-06 Score=72.59 Aligned_cols=108 Identities=10% Similarity=-0.025 Sum_probs=76.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSC 693 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~ 693 (813)
.+..+...+...|++++|+..|++..+. .| +...|..++.+|.+.|++++|+..+++. ...|+...+|..++.++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4555666667777777777777777644 45 3677777777777778888887777765 44566566788888888
Q ss_pred HHhCCHHHHHHHHHHHhcCC------CCCCCchhHHHHHHH
Q 046631 694 RLHGHSELAEVVAKKLLEMD------TRNSMPGYHVLLSNI 728 (813)
Q Consensus 694 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~~~l~~~ 728 (813)
...|++++|...++++++++ |.+ +.....+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~--~~~~~~l~~~ 121 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSA--REIDQLYYKA 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTH--HHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhH--HHHHHHHHHH
Confidence 88888888888888888887 665 5555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=5.5e-06 Score=69.30 Aligned_cols=109 Identities=16% Similarity=0.115 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
..+..+...+...|++++|...+++.... .| +...+..++.++.+.|++++|...+++. ...|..+.+|..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35556666777777888888877777654 45 4677777888888888888888887775 3455555588888888
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
+...|++++|...++++++.+|.+ +..+..++.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANN--PQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHh
Confidence 888899999999999999888887 6666666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.9e-06 Score=79.44 Aligned_cols=154 Identities=12% Similarity=0.001 Sum_probs=102.4
Q ss_pred hcCCHHHHHH---HHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCcHH
Q 046631 560 KSGVINYAAN---VFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGC----GIEPD-AITFVAVLSACSYAGLVD 631 (813)
Q Consensus 560 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~ 631 (813)
..|++++|.+ ++..-......++..+...+...|++++|+..+++..+. +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777777 444432334567777777778888888888888776651 22222 235667777788888888
Q ss_pred HHHHHHHHHHHhcCCCC-C----hhHHHHHHHHHhccCCHHHHHHHHHHhC----cCCCh---HHHHHHHHHHHHHhCCH
Q 046631 632 EGLQIFDLMQQEYKIQP-S----TEHYCCVADMLGRVGKVVEAYEFVKELG----EEGNV---LEIWGSLLGSCRLHGHS 699 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~ 699 (813)
+|...+++..+...-.+ + ...+..++.++...|++++|...+++.. ..++. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887765422122 1 4567788888888888888888887752 22222 22467788888888999
Q ss_pred HHHHHHHHHHhcCC
Q 046631 700 ELAEVVAKKLLEMD 713 (813)
Q Consensus 700 ~~a~~~~~~~~~~~ 713 (813)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888877653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.9e-06 Score=73.14 Aligned_cols=110 Identities=10% Similarity=0.008 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSL 689 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l 689 (813)
..+..+...+...|++++|...|++.. ...|+ ...+..++.+|...|++++|++.+++. ...|+...+|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 345555555556666666666666555 33454 455666666666777777777666654 3345445577777
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 690 LGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 690 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
..++...|++++|...++++++++|++ ...+..+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKN--KVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHH
Confidence 777777888888888888888887776 55555555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.7e-06 Score=80.82 Aligned_cols=170 Identities=8% Similarity=-0.054 Sum_probs=101.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 046631 556 DMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDE 632 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 632 (813)
......|++++|.+.++.-.+ .....|..+...+...|++++|+..|++.++. .|+...+... ....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH
Confidence 334445666666666653322 13445666667777777777777777777763 2322100000 0000
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 633 GLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
-. .. .....+..++.+|.+.|++++|+..+++. ...|+...+|..++.++...|++++|+..++++++
T Consensus 82 ~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 KK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 00 00 01356777888888888999888888876 44566666889999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHhcCCcHHHH-HHHHHHHHC
Q 046631 712 MDTRNSMPGYHVLLSNIYAEEGNWENVD-KVRKEMRER 748 (813)
Q Consensus 712 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 748 (813)
++|.+ +..+..++.++...|+.+++. ..+..|...
T Consensus 151 ~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 151 LNPNN--LDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HSTTC--HHHHHHHHHHHHHHHHHHC------------
T ss_pred HCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998 888889998888888777776 455555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-06 Score=73.14 Aligned_cols=98 Identities=6% Similarity=-0.066 Sum_probs=89.6
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSN 727 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~ 727 (813)
+...+..++..+.+.|++++|++.+++. ...|....+|..+...+...|++++|...++++++..|.+ +..+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHHHH
Confidence 3788899999999999999999999986 4556666699999999999999999999999999999998 899999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHC
Q 046631 728 IYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998854
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4.7e-06 Score=70.55 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
...+..++..+.+.|++++|.++++++ ...|+...+|..+...+...|++++|...++++++..|.+ +..+..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHH
Confidence 677888999999999999999999987 3456556689999999999999999999999999999988 8889999999
Q ss_pred HHhcCCcHHHHHHHHHHHHC
Q 046631 729 YAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 729 ~~~~g~~~~A~~~~~~m~~~ 748 (813)
|...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999854
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.7e-06 Score=75.67 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=63.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCC 655 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 655 (813)
+...|..+...+...|++++|+..|++.++. .| +...|..+..++...|++++|+..|++..+. .|+ ...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 4556666677777777777777777777763 33 4456666666777777777777777777644 454 666777
Q ss_pred HHHHHhccCCHHHHHHHHHHh
Q 046631 656 VADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~ 676 (813)
++.+|.+.|++++|++.+++.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777776665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.2e-06 Score=86.31 Aligned_cols=141 Identities=9% Similarity=-0.066 Sum_probs=74.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP--EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC 624 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 624 (813)
+...+..+...|.+.|++++|...|++.. .|+... -..+.+.++- .+ ....|..+..++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-----------~~~~~~~~~~-~~-------~~~~~~nla~~~ 206 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-----------FSNEEAQKAQ-AL-------RLASHLNLAMCH 206 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-----------CCSHHHHHHH-HH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-----------CChHHHHHHH-HH-------HHHHHHHHHHHH
Confidence 45678889999999999999999998776 222100 0001111000 00 012344444455
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHH
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a 702 (813)
.+.|++++|+..++++.+. .|+ ...|..++.+|...|++++|+..|+++ ...|+...++..+..++...|+.+++
T Consensus 207 ~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555432 342 555555555555555555555555554 33444444555555555555555555
Q ss_pred -HHHHHHH
Q 046631 703 -EVVAKKL 709 (813)
Q Consensus 703 -~~~~~~~ 709 (813)
...++++
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 2344444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.7e-06 Score=70.71 Aligned_cols=98 Identities=9% Similarity=-0.062 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSN 727 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~ 727 (813)
+...+..++..+...|++++|.+.+++. ...|+...+|..++..+...|++++|...++++++..|.+ +..+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHHHH
Confidence 3677888999999999999999999986 4556666699999999999999999999999999999998 899999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHC
Q 046631 728 IYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+|...|++++|...+++..+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999998854
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-05 Score=72.03 Aligned_cols=129 Identities=12% Similarity=-0.080 Sum_probs=94.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHH
Q 046631 579 SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVA 657 (813)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 657 (813)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+. .| +...+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 3456777777888888888888888887742 234567777777888888888888888888754 45 477788888
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHH--HHHHhCCHHHHHHHHHHHhc
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLG--SCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~ 711 (813)
.++.+.|++++|.+.++++ ...|....++..+.. .+...|++++|...+++...
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888888876 344544445544333 36677888888888776543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=5.3e-06 Score=71.87 Aligned_cols=101 Identities=10% Similarity=-0.043 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHH
Q 046631 612 PDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSL 689 (813)
Q Consensus 612 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l 689 (813)
.+...+..+...+...|++++|...|++..+. .|+ ...+..++.++...|++++|+..+++. ...|+.+.+|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34556777777777788888888888777754 453 677778888888888888888877775 4456666688888
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 690 LGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 690 ~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+.++...|++++|+..+++++++.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888887776
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-05 Score=70.69 Aligned_cols=98 Identities=14% Similarity=0.000 Sum_probs=89.0
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCCh---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHH
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNV---LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVL 724 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~ 724 (813)
+...+..++..+.+.|++++|++.+++. ...|+. ..+|..+..++...|++++|+..++++++..|.+ +..+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHH
Confidence 4778889999999999999999999987 455664 5689999999999999999999999999999998 899999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 725 LSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 725 l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
++.+|...|++++|...+++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999854
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=4.8e-06 Score=70.23 Aligned_cols=97 Identities=11% Similarity=-0.019 Sum_probs=77.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHH
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 694 (813)
+..+...+...|++++|...|++..+. .|+ ...+..++.++.+.|++++|+..+++. ...|+...+|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445566778889999999999888855 674 888888999999999999999988886 566777778999999999
Q ss_pred HhCCHHHHHHHHHHHhcCCCCC
Q 046631 695 LHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..|++++|+..++++++.+|++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 9999999999999999998875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.9e-06 Score=79.18 Aligned_cols=162 Identities=10% Similarity=-0.035 Sum_probs=75.1
Q ss_pred HHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhcCCh
Q 046631 519 VLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTMILGYGQHGMS 595 (813)
Q Consensus 519 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 595 (813)
........|.++.+...++...... ......+..+...+.+.|++++|...|++..+ | +.. |...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~---------- 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-WDDQ---------- 77 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-CCCH----------
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc-cchh----------
Confidence 3344455566666666655322211 11344577788889999999999999987652 1 220 0000
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHH
Q 046631 596 ERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVK 674 (813)
Q Consensus 596 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 674 (813)
........+ ....+..+..++...|++++|+..+++..+. .| +...+..++.+|...|++++|++.++
T Consensus 78 -~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 -ILLDKKKNI-------EISCNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp -HHHHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -hHHHHHHHH-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000000 0233444444555555555555555555533 33 25555555566666666666665555
Q ss_pred Hh-CcCCChHHHHHHHHHHHHHhCCHHHHH
Q 046631 675 EL-GEEGNVLEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 675 ~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 703 (813)
+. ...|+...++..+..++...++.+++.
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 54 333444445555555555544444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.3e-06 Score=87.42 Aligned_cols=167 Identities=5% Similarity=-0.063 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCCC-hh
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCG-IEPDAI----TFVAVLSACSYAGLVDEGLQIFDLMQQEY---KIQPS-TE 651 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~ 651 (813)
++..+...|...|++++|.+++.++...- ..++.. ..+.+-..+...|+.+++..++....... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 46778888888889988888888776521 111111 22233334456788999998888765431 22333 66
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhC-------cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC-----Cc
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKELG-------EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS-----MP 719 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-----~~ 719 (813)
++..++..|...|++++|..+++++. ..+....++..++..|...|++++|...+++++...+... ..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 78889999999999999999988751 2334455888999999999999999999998876532211 12
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
..+..++.++...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566778888899999999988877754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00015 Score=72.21 Aligned_cols=179 Identities=11% Similarity=-0.008 Sum_probs=123.4
Q ss_pred HHHHHHHHhhCC---CCCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 046631 564 INYAANVFAKIP---EKNSVTYTTMILGYGQHG--MSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGL-VDEGLQIF 637 (813)
Q Consensus 564 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~-~~~a~~~~ 637 (813)
+++++.+++.+. .++..+|+.-...+...+ .+++++.+++++.+.. +-|...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455666666554 346677777777777766 3788888888888743 3344566665555666676 58888888
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHhcc--------------CCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh-----
Q 046631 638 DLMQQEYKIQP-STEHYCCVADMLGRV--------------GKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH----- 696 (813)
Q Consensus 638 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~----- 696 (813)
+.+.+. .| |..+|+....++.+. +.++++++.+++. ...|+...+|+.+.+.+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 888865 45 466777666665544 4578888888775 56776666898877777665
Q ss_pred ------CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH---HhcCCcHHHHHHHHHHHHC
Q 046631 697 ------GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY---AEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 697 ------g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~ 748 (813)
+.++++++.++++++++|++ .-.+..++.+. ...|..+++...+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 35788999999999999987 55544443322 2457778888888888853
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-06 Score=73.48 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHhCcC----CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHH
Q 046631 663 VGKVVEAYEFVKELGEE----GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENV 738 (813)
Q Consensus 663 ~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 738 (813)
.|++++|+..+++.... |+...+|..++.++...|++++|+..++++++.+|++ +..+..++.+|...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCCHHHH
Confidence 45666666666665332 4444566666777777777777777777777777766 66666777777777777777
Q ss_pred HHHHHHHHH
Q 046631 739 DKVRKEMRE 747 (813)
Q Consensus 739 ~~~~~~m~~ 747 (813)
...+++..+
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666664
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.23 E-value=7.8e-06 Score=87.71 Aligned_cols=114 Identities=13% Similarity=-0.030 Sum_probs=57.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCH
Q 046631 589 YGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKV 666 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 666 (813)
+.+.|++++|++.|++.++. .|+ ...+..+..++.+.|++++|+..+++..+ +.|+ ...+..++.+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCH
Confidence 34455555555555555552 332 34555555555556666666665555553 2443 55555556666666666
Q ss_pred HHHHHHHHHh-CcCCChHHHHHHHHHH--HHHhCCHHHHHHHHH
Q 046631 667 VEAYEFVKEL-GEEGNVLEIWGSLLGS--CRLHGHSELAEVVAK 707 (813)
Q Consensus 667 ~~A~~~~~~~-~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 707 (813)
++|++.+++. ...|+...++..+..+ +...|++++|+..++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666555554 2333333344444444 555556666666655
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=3.3e-06 Score=90.66 Aligned_cols=119 Identities=8% Similarity=-0.038 Sum_probs=101.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 697 (813)
+...+...|++++|.+.+++..+. .|+ ...|..++.+|.+.|++++|++.+++. ...|+...+|..++.++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334567889999999999999865 675 889999999999999999999999887 556777779999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCchhHHHHHHH--HHhcCCcHHHHHHHH
Q 046631 698 HSELAEVVAKKLLEMDTRNSMPGYHVLLSNI--YAEEGNWENVDKVRK 743 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 743 (813)
++++|+..++++++++|++ +..+..++.+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHD--KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTC--TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999998 8888888888 888999999999987
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00031 Score=70.23 Aligned_cols=229 Identities=13% Similarity=0.009 Sum_probs=139.1
Q ss_pred hcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHH
Q 046631 457 KSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNG-LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQ 534 (813)
Q Consensus 457 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 534 (813)
+.+..++|.++++.+....| +..+|+.--..+...| .+++++..++.+... .|...+
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~------------------- 124 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQ------------------- 124 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHH-------------------
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHH-------------------
Confidence 33444567777776655456 5566777777777777 488888888888764 343322
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhc-C-CHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChH--------HHHHH
Q 046631 535 LHGFSIRYLLDQNVFVGTSLIDMYSKS-G-VINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSE--------RALSL 601 (813)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~ 601 (813)
+|+.-...+.+. + ++++++++++++.+ +|..+|+--...+.+.|.++ ++++.
T Consensus 125 ---------------aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 125 ---------------VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp ---------------HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 233222233332 3 55666666666663 35556665555555555555 78888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCc-------HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCH-------
Q 046631 602 FRSMKGCGIEPDAITFVAVLSACSYAGL-------VDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKV------- 666 (813)
Q Consensus 602 ~~~m~~~g~~p~~~~~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~------- 666 (813)
++++++.. .-|...|+.....+.+.+. +++++++++++... .| |...|+.+-.++.+.|+-
T Consensus 190 ~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~ 265 (349)
T 3q7a_A 190 CNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPA 265 (349)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCccccccc
Confidence 88888753 3345566666666666654 67888888777744 56 477777766667666543
Q ss_pred -------------HHHHHHHHHhCcC-------CChHHHHHHHHHHHHHhCCHHHHHHHHHHHh-cCCCCCCCchhHHHH
Q 046631 667 -------------VEAYEFVKELGEE-------GNVLEIWGSLLGSCRLHGHSELAEVVAKKLL-EMDTRNSMPGYHVLL 725 (813)
Q Consensus 667 -------------~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~~~l 725 (813)
.+..++..++... ...+.++..|+..|...|+.++|.++++.+. +.+|.. ..++...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir--~~yw~~~ 343 (349)
T 3q7a_A 266 ILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR--AGYWEFR 343 (349)
T ss_dssp HGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG--HHHHHHH
T ss_pred ccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH--HHHHHHH
Confidence 3444444444322 2344478888888888888889999988886 667765 5555544
Q ss_pred HH
Q 046631 726 SN 727 (813)
Q Consensus 726 ~~ 727 (813)
+.
T Consensus 344 ~~ 345 (349)
T 3q7a_A 344 RR 345 (349)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-05 Score=84.90 Aligned_cols=162 Identities=12% Similarity=0.016 Sum_probs=110.3
Q ss_pred CCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046631 562 GVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFD 638 (813)
Q Consensus 562 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 638 (813)
+++++|.+.|+...+ .....|..+...|.+.|++++|+..|++.++. .|+...+ . -+...
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~---- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK---- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----
Confidence 344445444443331 13556777777788888888888888877762 2221100 0 00100
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC
Q 046631 639 LMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS 717 (813)
Q Consensus 639 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 717 (813)
+... -....|..++.+|.+.|++++|+..++++ ...|+...+|..+..++...|++++|+..++++++++|++
T Consensus 311 ~~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~- 384 (457)
T 1kt0_A 311 ASES-----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN- 384 (457)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Confidence 0100 01467888899999999999999998886 5566666799999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCcHHHHH-HHHHHHH
Q 046631 718 MPGYHVLLSNIYAEEGNWENVDK-VRKEMRE 747 (813)
Q Consensus 718 ~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 747 (813)
...+..++.++.+.|++++|.+ .+++|..
T Consensus 385 -~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 385 -KAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999988775 5555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=7e-06 Score=71.16 Aligned_cols=62 Identities=13% Similarity=-0.085 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcC-------CCCCCCchhH----HHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEM-------DTRNSMPGYH----VLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.|..+..++...|++++|+..+++++++ +|++ +..| ...+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~--~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE--GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch--HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7888888888888888888888888888 9988 8888 88999999999999999999998864
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.6e-05 Score=66.52 Aligned_cols=101 Identities=13% Similarity=-0.013 Sum_probs=72.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-h---hHHHHHHHHHhccCCHHHHHHHHHHh-CcCCCh---HHHHHHHH
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-T---EHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNV---LEIWGSLL 690 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~---~~~~~~l~ 690 (813)
.+...+...|++++|...|+.+.+. .|+ . ..+..++.++.+.|++++|+..++++ ...|+. +.++..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3445666778888888888777754 343 2 46777788888888888888887775 333443 55788888
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHH
Q 046631 691 GSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVL 724 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~ 724 (813)
.++...|++++|...++++++..|++ +.....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~a 115 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGS--DAARVA 115 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTS--HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCC--hHHHHH
Confidence 88888888888888888888888876 444333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=67.98 Aligned_cols=97 Identities=13% Similarity=0.022 Sum_probs=58.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC----cCCC----hHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG----EEGN----VLEIW 686 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~ 686 (813)
.+..+...+.+.|++++|+..|++.++. .|+ ...|..++.+|.+.|++++|++.+++.. ..+. ...+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3444555555566666666666655532 453 5555666666666666666666655541 1111 12256
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 687 GSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
..++.++...|++++|+..+++++...|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 67777777788888888888888777665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.3e-06 Score=71.84 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=68.3
Q ss_pred cCcHHHHHHHHHHHHHhcCC-CCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHH
Q 046631 627 AGLVDEGLQIFDLMQQEYKI-QPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 703 (813)
.|++++|+..|++..+. +. .|+ ...+..++.+|.+.|++++|++.+++. ...|+.+.++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 56777788888777732 10 243 677788888888888888888888876 455666668888888888899999999
Q ss_pred HHHHHHhcCCCCCCCchhH
Q 046631 704 VVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~~ 722 (813)
..++++++..|++ +...
T Consensus 82 ~~~~~al~~~p~~--~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDD--ETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCC--HHHH
T ss_pred HHHHHHHHhCCCc--HHHH
Confidence 9999998888887 5543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.5e-06 Score=86.02 Aligned_cols=150 Identities=11% Similarity=-0.028 Sum_probs=88.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVA 657 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 657 (813)
....|..+...+.+.|++++|+..|++.+. ..|+... +...|+.+++...+. ...|..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHH
Confidence 355677788888889999999999999887 4555442 234455555443221 23688899
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH-HhcCCc
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY-AEEGNW 735 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~-~~~g~~ 735 (813)
.+|.+.|++++|+..+++. ...|+...+|..+..++...|++++|+..++++++++|++ +..+..++.+. ...+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~--~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD--KAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 5567666699999999999999999999999999999998 88888887773 445677
Q ss_pred HHHHHHHHHHHHCC
Q 046631 736 ENVDKVRKEMRERG 749 (813)
Q Consensus 736 ~~A~~~~~~m~~~~ 749 (813)
+++..++++|.+..
T Consensus 316 ~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 316 QKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHhhCCC
Confidence 78888888887543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.13 E-value=9.1e-06 Score=83.85 Aligned_cols=138 Identities=11% Similarity=-0.051 Sum_probs=105.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHH
Q 046631 579 SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVA 657 (813)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 657 (813)
...|..+...+.+.|++++|+..|++.++. .+... .... .+... ...| +...|..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHH
Confidence 456777788888888888888888887762 11100 0001 11111 1234 367888999
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcH
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWE 736 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~ 736 (813)
.+|.+.|++++|++.++++ ...|+...+|..+..++...|++++|+..++++++++|++ ...+..++.++...++.+
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~--~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED--KAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 5567777799999999999999999999999999999998 888889999988888777
Q ss_pred HHHH
Q 046631 737 NVDK 740 (813)
Q Consensus 737 ~A~~ 740 (813)
++.+
T Consensus 359 ~a~k 362 (370)
T 1ihg_A 359 DKEK 362 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=72.26 Aligned_cols=131 Identities=16% Similarity=0.032 Sum_probs=72.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhC----cCCC---hHHH
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELG----EEGN---VLEI 685 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~---~~~~ 685 (813)
+..+...+...|++++|...+++..+...-.++ ...+..++..+...|++++|.+.+++.. ..++ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 333444444444555554444444322100011 2345556666666666666666655531 1111 1225
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC----CCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRN----SMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+..+...+...|++++|...++++++..+.. .....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666777777777777777777776542211 0134566778888888888888888887764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-05 Score=78.42 Aligned_cols=101 Identities=9% Similarity=-0.062 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHH
Q 046631 613 DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLL 690 (813)
Q Consensus 613 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~ 690 (813)
+...+..+...+...|++++|...|++..+. .| +...|..++.+|.+.|++++|+..+++. ...|+...+|..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567778888899999999999999999865 67 5888999999999999999999999886 55677677899999
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 691 GSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.++...|++++|+..++++++++|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999998876
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-05 Score=65.38 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=73.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCC--hHHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGN--VLEIWGSLLG 691 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~~l~~ 691 (813)
.+..+...+...|++++|...+++..+. .| +...+..++.++...|++++|++.+++. ...|. ...+|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4555666677777888888877777754 34 3667777888888888888888887776 33455 5558888888
Q ss_pred HHHHh-CCHHHHHHHHHHHhcCCCCC
Q 046631 692 SCRLH-GHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 692 ~~~~~-g~~~~a~~~~~~~~~~~p~~ 716 (813)
++... |++++|...++++++..|.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88888 88888888888888888875
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.6e-05 Score=66.55 Aligned_cols=96 Identities=17% Similarity=0.008 Sum_probs=81.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhC-cCCChH---HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-chhHHHHHH
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKELG-EEGNVL---EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-PGYHVLLSN 727 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~~~l~~ 727 (813)
+..++..+.+.|++++|.+.++++. ..|+.. .+|..++.++...|++++|...++++++..|++.. +..+..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 4557788899999999999999873 244433 68899999999999999999999999999998621 244788999
Q ss_pred HHHhcCCcHHHHHHHHHHHHC
Q 046631 728 IYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+|...|++++|...++++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999854
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.7e-06 Score=73.72 Aligned_cols=77 Identities=16% Similarity=-0.006 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc-hhHHHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP-GYHVLLSN 727 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~~~l~~ 727 (813)
...|..++.+|.+.|++++|+..+++. ...|+.+.+|..++.++...|++++|...++++++++|++ + .....+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~~l~~ 140 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA--ASVVAREMKI 140 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Confidence 567888999999999999999988876 5567777799999999999999999999999999999987 5 44444443
Q ss_pred H
Q 046631 728 I 728 (813)
Q Consensus 728 ~ 728 (813)
+
T Consensus 141 ~ 141 (162)
T 3rkv_A 141 V 141 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.09 E-value=9.1e-06 Score=70.47 Aligned_cols=70 Identities=19% Similarity=0.076 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh-Cc-------CCChHHHH----HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL-GE-------EGNVLEIW----GSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP 719 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 719 (813)
.|..++.++.+.|++++|+..+++. .. +|+....| ...+.++...|++++|+..|+++++++|.+ .
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d--~ 136 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER--K 136 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc--H
Confidence 6777778888888888888777765 34 78888799 999999999999999999999999999998 5
Q ss_pred hhHH
Q 046631 720 GYHV 723 (813)
Q Consensus 720 ~~~~ 723 (813)
..+-
T Consensus 137 ~~~~ 140 (159)
T 2hr2_A 137 GETP 140 (159)
T ss_dssp SCCT
T ss_pred HHHH
Confidence 5443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.5e-05 Score=80.61 Aligned_cols=113 Identities=7% Similarity=-0.075 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 694 (813)
..+..+...+.+.|++++|+..|++..+. .|+.. .....+++ ....|....+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~------~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADG------AKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHH------GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHH------HHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666532 01000 00011111 1133445558999999999
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 695 LHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+.|++++|+..++++++++|++ +..+..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSN--TKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999998 999999999999999999999999999854
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.5e-05 Score=69.58 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hh
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIE-PDA----ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TE 651 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 651 (813)
++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|..++++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666666677766666665542110 111 25666667777788888888887776543211122 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhC----cCC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKELG----EEG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
.+..++.++...|++++|.+.+++.. ..+ ....++..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 67778888888888888888877652 122 2233677888888889999999999988876543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.1e-05 Score=66.02 Aligned_cols=99 Identities=8% Similarity=0.007 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-----chhHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-----PGYHV 723 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~~ 723 (813)
...+..++..+...|++++|...+++. ...|....+|..++..+...|++++|...++++++..|.+.. +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455677788888888888888888776 344555558888888888899999999999998888765311 34677
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 724 LLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 724 ~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.++.+|...|++++|.+.++++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8899999999999999999998853
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.1e-05 Score=67.05 Aligned_cols=108 Identities=12% Similarity=-0.011 Sum_probs=67.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCc-CCCh-------HHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGE-EGNV-------LEIW 686 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-------~~~~ 686 (813)
.+..+...+...|++++|..++++..+. .| +...+..++.+|...|++++|...++++.. .|.. ..+|
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3445555566666666666666666543 23 355666666666666666666666665411 1111 3467
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 687 GSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
..++..+...|++++|...++++++..|+ +.....++.++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT---PDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC---HHHHHHHHHHH
Confidence 77788888888888888888888887773 45555554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.6e-05 Score=81.81 Aligned_cols=125 Identities=12% Similarity=0.064 Sum_probs=95.1
Q ss_pred HHhccCcHHHHHHHHHHHHHhc--CCCC---C-hhHHHHHHHHHhccCCHHHHHHHHHHh---------CcCCChHHHHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEY--KIQP---S-TEHYCCVADMLGRVGKVVEAYEFVKEL---------GEEGNVLEIWG 687 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~ 687 (813)
.+...|++++|..++++..+.. -+.| + ..+++.|+.+|...|++++|+.++++. +.+|+...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456777888877777665442 1122 2 667888888888888888888887774 45566666889
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhc-----CCCCCCCchh---HHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLE-----MDTRNSMPGY---HVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.|+..|..+|++++|+.+++++++ ++|+. |.+ ...+..++.+.|++++|+.++.+++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H--p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH--PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998875 46665 544 4467788889999999999999998754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-05 Score=81.64 Aligned_cols=149 Identities=7% Similarity=-0.010 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIPE--KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACS 625 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~ 625 (813)
...+..+...|.+.|++++|...|++... |+... +...++..++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 44577888889999999999999998663 32221 222333444433221 136788888999
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHH-HhCCHHHH
Q 046631 626 YAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCR-LHGHSELA 702 (813)
Q Consensus 626 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~-~~g~~~~a 702 (813)
+.|++++|+..+++..+. .| +...|..++.+|...|++++|+..++++ ...|+...++..|..... ..+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999855 57 4889999999999999999999999987 456666667777776633 44677888
Q ss_pred HHHHHHHhcCCCCC
Q 046631 703 EVVAKKLLEMDTRN 716 (813)
Q Consensus 703 ~~~~~~~~~~~p~~ 716 (813)
...++++++..|.+
T Consensus 319 ~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 319 KEMYKGIFKGKDEG 332 (338)
T ss_dssp --------------
T ss_pred HHHHHHhhCCCCCC
Confidence 89999999998876
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00021 Score=78.05 Aligned_cols=171 Identities=6% Similarity=-0.065 Sum_probs=140.1
Q ss_pred cCCHHHHHHHHhhCC--C-CCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 046631 561 SGVINYAANVFAKIP--E-KNSVTYTTMILGYGQHGM----------SERALSLFRSMKGCGIEPDAITFVAVLSACSYA 627 (813)
Q Consensus 561 ~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 627 (813)
...-++|.+.++.+. . .+..+|+.--..+...|+ ++++++.++++.+.. +-+...|..-...+.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344567788888776 2 356788877777777777 899999999999853 33455788777788888
Q ss_pred C--cHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC-CHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh------
Q 046631 628 G--LVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVG-KVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH------ 696 (813)
Q Consensus 628 g--~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~------ 696 (813)
| +++++++.++++.+. .| +..+|+.-..++.+.| .++++++.++++ ..+|....+|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 779999999999965 66 5888988888999999 899999998887 56676666999988888774
Q ss_pred --------CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHH
Q 046631 697 --------GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWEN 737 (813)
Q Consensus 697 --------g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 737 (813)
+.++++.+.+++++..+|++ ...+..+.+++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~--~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPND--QSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSC--SHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCC--ccHHHHHHHHHhcCCCccc
Confidence 45789999999999999999 9999999999999988665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00012 Score=77.80 Aligned_cols=161 Identities=9% Similarity=-0.027 Sum_probs=120.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-
Q 046631 587 LGYGQHGMSERALSLFRSMKGCGIEPD----------------AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS- 649 (813)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 649 (813)
..+...|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+-.++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445677888888888888887432211 124778889999999999999999988765433333
Q ss_pred ---hhHHHHHHHHHhccCCHHHHHHHHHHh-------CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC----CCC
Q 046631 650 ---TEHYCCVADMLGRVGKVVEAYEFVKEL-------GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM----DTR 715 (813)
Q Consensus 650 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~ 715 (813)
..+.+.+...+...|++++|.++++.. ........++..|+..+...|++++|...+++++.. +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 234556667777889999999988775 233344558899999999999999999999988653 222
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 716 NSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 716 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
......+..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 21245788899999999999999999998875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.95 E-value=5e-05 Score=81.06 Aligned_cols=65 Identities=14% Similarity=-0.025 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
..+|..+..++.+.|++++|+..++++++++|++ +..+..++.+|...|++++|...++++.+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3489999999999999999999999999999999 9999999999999999999999999998653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.91 E-value=3.5e-05 Score=62.23 Aligned_cols=68 Identities=15% Similarity=0.047 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 679 EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.|+.+.+|..++..+...|++++|+..++++++++|++ +..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY--VGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46666689999999999999999999999999999998 899999999999999999999999998854
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0029 Score=62.94 Aligned_cols=175 Identities=13% Similarity=-0.002 Sum_probs=116.6
Q ss_pred chhHHHHHHHHHHhcC--CHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSG--VINYAANVFAKIP---EKNSVTYTTMILGYGQHGM-SERALSLFRSMKGCGIEPDAITFVAV 620 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 620 (813)
+..+|+.-.-++.+.| .+++++.+++++. ..|..+|+--...+...|. ++++++.++++++.. .-|...|+..
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R 185 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR 185 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 3444555555555555 3677777777776 3467777777777777777 588888888888853 3344455555
Q ss_pred HHHHhcc--------------CcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhcc-----------CCHHHHHHHHH
Q 046631 621 LSACSYA--------------GLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRV-----------GKVVEAYEFVK 674 (813)
Q Consensus 621 l~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~ 674 (813)
...+... +.++++++++...... .| |...|+-+-..+.+. +.++++++.++
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 4444333 4578888888888854 67 477777666666555 46788888888
Q ss_pred Hh-CcCCChHHHHHHHHHHH-----HHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 675 EL-GEEGNVLEIWGSLLGSC-----RLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 675 ~~-~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
++ ...|+. .|..+..++ ...|..++....+.++.+++|.. ...|.-+..-+
T Consensus 263 elle~~pd~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r--~~~y~d~~~~~ 319 (331)
T 3dss_A 263 ELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR--AAYLDDLRSKF 319 (331)
T ss_dssp HHHHHCTTC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG--HHHHHHHHHHH
T ss_pred HHHhhCccc--chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch--hhHHHHHHHHH
Confidence 87 455655 454433322 23567788999999999999998 77777665443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.85 E-value=7.2e-05 Score=58.89 Aligned_cols=82 Identities=23% Similarity=0.261 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
...+..++..+.+.|++++|+..+++. ...|+...+|..+..++...|++++|...++++++++|.+ +..+..++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Confidence 566777888888888888888888876 4456556688889999999999999999999999999988 8888888888
Q ss_pred HHhcC
Q 046631 729 YAEEG 733 (813)
Q Consensus 729 ~~~~g 733 (813)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00033 Score=60.33 Aligned_cols=112 Identities=8% Similarity=-0.085 Sum_probs=74.5
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHH
Q 046631 628 GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAE 703 (813)
Q Consensus 628 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 703 (813)
+++++|..+|++..+. | .|+. . |..+|...+.+++|++++++....++.. .+..|...|.. .+|.++|.
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~-a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGN-GCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHH-HHHHHHHHHHcCCCCCccHHHHH
Confidence 3566677777666654 3 2222 2 6666666667777777777766555554 66777777766 66777777
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHHHCCC
Q 046631 704 VVAKKLLEMDTRNSMPGYHVLLSNIYAE----EGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 750 (813)
..++++.+. .+ +..+..|+.+|.. .++.++|.+++++..+.|.
T Consensus 82 ~~~~~Aa~~--g~--~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--ND--QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CC--HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 777777765 23 5666777777777 6777777777777776653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.82 E-value=4.7e-05 Score=63.36 Aligned_cols=79 Identities=10% Similarity=0.041 Sum_probs=62.2
Q ss_pred HHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 668 EAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 668 ~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
+|++.+++. ...|+.+.+|..++..+...|++++|+..++++++.+|.+ +..+..++.+|...|++++|...+++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--SVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355555554 4556666688888888888888888888888888888887 7888888888888888888888888877
Q ss_pred HC
Q 046631 747 ER 748 (813)
Q Consensus 747 ~~ 748 (813)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=1.7e-05 Score=68.60 Aligned_cols=85 Identities=8% Similarity=-0.034 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCC----------HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh
Q 046631 663 VGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGH----------SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE 731 (813)
Q Consensus 663 ~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 731 (813)
.+.+++|++.+++. ..+|+.++.|..++.++...++ +++|+..++++++++|+. ...|..++++|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~--~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--DEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHH
Confidence 34455555555543 3455555555555555555544 468999999999999998 8889999999988
Q ss_pred cC-----------CcHHHHHHHHHHHHCC
Q 046631 732 EG-----------NWENVDKVRKEMRERG 749 (813)
Q Consensus 732 ~g-----------~~~~A~~~~~~m~~~~ 749 (813)
.| ++++|.+.|++..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999988653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=4.7e-05 Score=65.86 Aligned_cols=110 Identities=13% Similarity=0.017 Sum_probs=73.7
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCH----------HHHHHHHHHh-CcCCChHHHHHHHHHHH
Q 046631 626 YAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKV----------VEAYEFVKEL-GEEGNVLEIWGSLLGSC 693 (813)
Q Consensus 626 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~----------~~A~~~~~~~-~~~~~~~~~~~~l~~~~ 693 (813)
+.+.+++|.+.++...+. .|+ ...|..++.++...|++ ++|+..|++. ..+|+..++|..++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 344566677777666643 563 66777677777666553 4777777765 56677777788888888
Q ss_pred HHh-----------CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 694 RLH-----------GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 694 ~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
... |++++|+..|+++++++|++ ..+...+. -.++|.++.-.+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~--~~y~~al~-------~~~ka~el~~~~~~ 146 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN--THYLKSLE-------MTAKAPQLHAEAYK 146 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHH-------HHHTHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC--HHHHHHHH-------HHHhCHhccCcccc
Confidence 776 48999999999999999997 54433331 12455555555443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00019 Score=76.28 Aligned_cols=123 Identities=10% Similarity=-0.019 Sum_probs=76.6
Q ss_pred HHhcCChHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHh----cCC-CCC-hhHHHH
Q 046631 589 YGQHGMSERALSLFRSMKGC---GIEPDA----ITFVAVLSACSYAGLVDEGLQIFDLMQQE----YKI-QPS-TEHYCC 655 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~---g~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~-~p~-~~~~~~ 655 (813)
+..+|++++|+.++++.++. -+.|+. .+++.|..+|...|++++|..++++..+. +|- .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34455555555555554431 122221 25666666777777777777666665432 121 122 566778
Q ss_pred HHHHHhccCCHHHHHHHHHHh---------CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 656 VADMLGRVGKVVEAYEFVKEL---------GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
|+.+|...|++++|+.++++. +.+|...++.+.|..++...+.+++|+..+.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877764 34455555666777777777888888888877654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=8.4e-05 Score=61.18 Aligned_cols=95 Identities=12% Similarity=-0.064 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC----chhHH
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM----PGYHV 723 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~~ 723 (813)
+...+..++..+.+.|++++|++.+++. ...|+.+.+|..++.++...|++++|+..++++++++|++.. ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567788888999999999999998886 456666668999999999999999999999999999988511 22345
Q ss_pred HHHHHHHhcCCcHHHHHHHH
Q 046631 724 LLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 724 ~l~~~~~~~g~~~~A~~~~~ 743 (813)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 56666666666665554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00017 Score=56.70 Aligned_cols=69 Identities=6% Similarity=-0.006 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHHhCC---HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 679 EGNVLEIWGSLLGSCRLHGH---SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.|+.+++|..+..++...++ .++|...++++++++|++ +....+++..+.+.|++++|...|+++.+..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~--~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN--EAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45666688888888876655 699999999999999999 9999999999999999999999999999654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.001 Score=72.60 Aligned_cols=153 Identities=12% Similarity=0.074 Sum_probs=125.6
Q ss_pred hcC-ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 046631 591 QHG-MSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGL----------VDEGLQIFDLMQQEYKIQPS-TEHYCCVA 657 (813)
Q Consensus 591 ~~g-~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 657 (813)
+.| ..++|++.+++++. +.|+.. .|+.--.++...|+ +++++..++.+.+. .|. ..+|..-.
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 344 45788999999999 567655 45555555555666 89999999999965 674 88898888
Q ss_pred HHHhccC--CHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC-CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhc-
Q 046631 658 DMLGRVG--KVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG-HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE- 732 (813)
Q Consensus 658 ~~~~~~g--~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~- 732 (813)
.++.+.| ++++++++++++ ..+|....+|+.-.+.+...| .++++.+.++++++.+|.+ ..++...+.++.+.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n--~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQLH 192 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC--HHHHHHHHHHHHHHS
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC--ccHHHHHHHHHHhhc
Confidence 9999999 779999999998 566666669999999999999 8999999999999999999 89999998888874
Q ss_pred -------------CCcHHHHHHHHHHHHCCC
Q 046631 733 -------------GNWENVDKVRKEMRERGL 750 (813)
Q Consensus 733 -------------g~~~~A~~~~~~m~~~~~ 750 (813)
++++++.+.++++....+
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 567889998888876543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00013 Score=60.51 Aligned_cols=82 Identities=9% Similarity=-0.032 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 632 EGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
+|+..|++.. ...|+ ...+..++.+|.+.|++++|+..+++. ...|+...+|..++.++...|++++|...++++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556666665 44564 777778888888888888888888775 445665668888888888888888888888888
Q ss_pred hcCCCCC
Q 046631 710 LEMDTRN 716 (813)
Q Consensus 710 ~~~~p~~ 716 (813)
+++.|..
T Consensus 80 l~~~~~~ 86 (115)
T 2kat_A 80 LAAAQSR 86 (115)
T ss_dssp HHHHHHH
T ss_pred HHhcccc
Confidence 8877654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00045 Score=59.48 Aligned_cols=113 Identities=8% Similarity=-0.107 Sum_probs=94.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCCHH
Q 046631 592 HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR----VGKVV 667 (813)
Q Consensus 592 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 667 (813)
.+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356789999999999987 44443 666677778889999999998865 367888889999988 88999
Q ss_pred HHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCC
Q 046631 668 EAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 668 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 714 (813)
+|++++++....++.. .+..|...|.. .+|.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~-a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQD-GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHH-HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999997777766 88899999988 7899999999999998754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0002 Score=75.00 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=84.0
Q ss_pred HHHHhccCCHHHHHHHHHHh---------CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC-----CCCC-CCchh
Q 046631 657 ADMLGRVGKVVEAYEFVKEL---------GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM-----DTRN-SMPGY 721 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~-~~~~~ 721 (813)
+.-+.+.|++++|+.++++. +.+|....+++.|+.+|...|++++|+.++++++++ +|++ +....
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677778887777765 223344557888888888888998888888887753 3433 11445
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 046631 722 HVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMR 793 (813)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 793 (813)
+..|+.+|..+|++++|..++++..+--.. .-...||...+++..|.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 677899999999999999999998742110 111469999888888888777664
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00017 Score=58.14 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=51.8
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+...+..++.+|.+.|++++|++.++++ ...|+.+.+|..++.++...|++++|+..+++++++.|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 3677777888888888888888888775 4556656678888888888888888888888887766543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0009 Score=52.34 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 682 VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
....|..+...+...|++++|+..++++++..|.+ +..+..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44588899999999999999999999999999998 899999999999999999999999998854
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00016 Score=75.47 Aligned_cols=85 Identities=15% Similarity=0.111 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHh---------CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC-----CCCC-CCchhHHHHHH
Q 046631 663 VGKVVEAYEFVKEL---------GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM-----DTRN-SMPGYHVLLSN 727 (813)
Q Consensus 663 ~g~~~~A~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~-~~~~~~~~l~~ 727 (813)
.|++++|+.++++. +.+|+...+++.|+.+|...|++++|+.++++++++ +|++ +....+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34555555555543 233344456677777777777777777777766642 3333 11445667888
Q ss_pred HHHhcCCcHHHHHHHHHHHH
Q 046631 728 IYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~ 747 (813)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888888764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00016 Score=59.48 Aligned_cols=61 Identities=8% Similarity=0.036 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
..|..+...+...|++++|++.|++.++.. +.+...+..+..++...|++++|+..+++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345555555555566666666666555531 1233445555555555666666666655555
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0017 Score=64.73 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=53.7
Q ss_pred HhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 675 ELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 675 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.+...|..+.+|..+...+...|++++|...+++++.++|. ...|..++.++.-.|++++|.+.+++.....
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33445656657777776676778888888888888888764 5667788888888888888888888777654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0017 Score=67.69 Aligned_cols=95 Identities=16% Similarity=0.054 Sum_probs=65.9
Q ss_pred ccCcHHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHh---------CcCCChHHHHHHHH
Q 046631 626 YAGLVDEGLQIFDLMQQEY--KIQPS----TEHYCCVADMLGRVGKVVEAYEFVKEL---------GEEGNVLEIWGSLL 690 (813)
Q Consensus 626 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~~l~ 690 (813)
..|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++. +.+|+....++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3456677777766655431 12232 566777888888888888888777764 45566666888888
Q ss_pred HHHHHhCCHHHHHHHHHHHhc-----CCCCCCCchhH
Q 046631 691 GSCRLHGHSELAEVVAKKLLE-----MDTRNSMPGYH 722 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 722 (813)
..|..+|++++|+.+++++++ .+|++ |.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H--p~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDH--PYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC--HHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCC--hHHH
Confidence 999999999999888888875 35665 5443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0041 Score=64.96 Aligned_cols=100 Identities=10% Similarity=-0.058 Sum_probs=66.2
Q ss_pred HHhccCcHHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHh---------CcCCChHHHHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEY--KIQPS----TEHYCCVADMLGRVGKVVEAYEFVKEL---------GEEGNVLEIWG 687 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~ 687 (813)
.+...|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.+++++ +.+|+....++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566677777666665331 11222 556677777777777777777776664 44556666788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhc-----CCCCCCCchhHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLE-----MDTRNSMPGYHVL 724 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~~~ 724 (813)
.|+..|..+|++++|+.+++++++ .+|++ |.+-.+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H--p~~~~~ 415 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH--SLIEDL 415 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS--HHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC--hHHHHH
Confidence 888888888888888888888775 46665 555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0029 Score=50.41 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=58.8
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHH-HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLE-IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG 733 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 733 (813)
.+..+.+.|++++|++.++++ ...|+... +|..++.++...|++++|+..++++++++|++ +..+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS--PALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS--THHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHH--------H
Confidence 456677888888888888776 45666676 88888888888889999999999998888887 555421 3
Q ss_pred CcHHHHHHHHHHH
Q 046631 734 NWENVDKVRKEMR 746 (813)
Q Consensus 734 ~~~~A~~~~~~m~ 746 (813)
.+.++...+++..
T Consensus 76 ~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 76 MVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHh
Confidence 3445555554443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00033 Score=70.84 Aligned_cols=242 Identities=12% Similarity=0.119 Sum_probs=139.9
Q ss_pred CCcchHHHhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHH
Q 046631 53 GRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCH 132 (813)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 132 (813)
++++.|.+.-++... +..|..+..+..+.+...+|++.|-+. + |+..|..++.++.+.|.+++-...+..
T Consensus 39 ~~ldRa~eyA~~~n~--p~VWs~LgkAqL~~~~v~eAIdsyIkA---~-----Dps~y~eVi~~A~~~~~~edLv~yL~M 108 (624)
T 3lvg_A 39 GNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA---D-----DPSSYMEVVQAANTSGNWEELVKYLQM 108 (624)
T ss_dssp CCSTTTTTSSSSCCC--CCCSSSHHHHTTTSSSCTTTTTSSCCC---S-----CCCSSSHHHHHTTTSSCCTTHHHHHHT
T ss_pred cccHHHHHHHHHhCC--ccHHHHHHHHHHccCchHHHHHHHHhC---C-----ChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445555554444433 334666666666666666665544222 2 555666666666666666666666665
Q ss_pred HHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccc----------cCCCChhHHHHHHcccCC--------------
Q 046631 133 FIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVE----------VDYSKYDLVCKVFDTMRR-------------- 188 (813)
Q Consensus 133 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~~~g~~~~a~~~~~~~~~-------------- 188 (813)
.++.. -++.+-+.|+-+|+|.++..+-+.....+.. ...|.++.|.-+|..+..
T Consensus 109 aRk~~--ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 109 ARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp TSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred HHHHh--cccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 55442 2334455666666666555544333211111 112555666666555431
Q ss_pred ----------CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCC
Q 046631 189 ----------RNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSE 258 (813)
Q Consensus 189 ----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 258 (813)
.++.+|-.+-.+|...+.+.-|.-.--.+. +.|| -...++..|-..|.+++-..+++..+...-
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglEr- 260 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLER- 260 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTT-
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCc-
Confidence 367789999999988888776654443333 2222 233456667788888888888776653221
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHhhc----CCC-------CcchHHHHHHHHHhCCCchHHHH
Q 046631 259 YVNDLFVASSAIFMYAELGCFDFARKIFDNC----LER-------NTEVWNTMIGGYVQNNHPVEAIE 315 (813)
Q Consensus 259 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~-------~~~~~~~li~~~~~~g~~~~A~~ 315 (813)
.....++-|.-.|++-. .++..+.++.. .-| ....|.-++-.|++-..++.|..
T Consensus 261 --AHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 261 --AHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp --CCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred --hhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 35677888888888763 44444433322 111 45568888888888777777754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.86 E-value=1.8e-05 Score=79.75 Aligned_cols=459 Identities=13% Similarity=0.090 Sum_probs=253.0
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLV 253 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 253 (813)
+++++|.+.-++.. .+..|+.+..+....+++.+|++-|-+ .-|...|..+|.++.+.|.++.-..++..+.
T Consensus 39 ~~ldRa~eyA~~~n--~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 39 GNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CCSTTTTTSSSSCC--CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred cccHHHHHHHHHhC--CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444444444433 345688999999999999999887622 1366689999999999999999999988877
Q ss_pred HhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhH
Q 046631 254 KLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTF 333 (813)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~ 333 (813)
+.. .++.+-+.|+-+|++.+++.+..+.+ ..+|+.-...+..-|...|.++.|.-+| ..+.. |
T Consensus 111 k~~----ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKily-s~isN---------~ 173 (624)
T 3lvg_A 111 KKA----RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLY-NNVSN---------F 173 (624)
T ss_dssp TTC----CSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTG-GGSCC---------C
T ss_pred HHh----cccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHH-HhCcc---------H
Confidence 764 46677789999999999987755444 3467777788888899999999998888 33321 2
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhH
Q 046631 334 LSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVT 413 (813)
Q Consensus 334 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 413 (813)
.-+...+.+.|++..|... +....++.+|..+-.+|...+.+.-|...--.+. +.|| .
T Consensus 174 akLAstLV~L~~yq~AVda-----------------ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--e 231 (624)
T 3lvg_A 174 GRLASTLVHLGEYQAAVDG-----------------ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--E 231 (624)
T ss_dssp TTTSSSSSSCSGGGSSTTT-----------------TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--C
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--H
Confidence 2333344555555544321 1123567778888888888887766644433332 1121 2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--chHHHHHHHHHhcCCHHHHHHHHhhcCCC--CC-------ChhhHH
Q 046631 414 VTALLSAASNLRNQDVGKQTHAYLLRHGIHFE--GMESYLIDMYAKSGLIKTARQIFEKNDSG--DR-------DQATWN 482 (813)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-------~~~~~~ 482 (813)
...++..|-..|.+++...+++..+ |.+.. .+++-|.-.|+|- +.++..+.++..-+. -| ....|.
T Consensus 232 L~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ 308 (624)
T 3lvg_A 232 LEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 308 (624)
T ss_dssp CSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHH
Confidence 2334555667777777777776655 33333 6667777777765 344444444432110 12 344688
Q ss_pred HHHHHHHhCCChHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchh
Q 046631 483 AMIAGYTQNGLLEEAFVAF-------------RQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVF 549 (813)
Q Consensus 483 ~li~~~~~~~~~~~A~~~~-------------~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 549 (813)
-++-.|.+..+++.|.... .+.+. -..|...|-..|.-|....- ..-..++.-+ ...+++
T Consensus 309 ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KVaN~EiyYKAi~FYL~e~P-~lL~DLL~vL-~prlDh--- 381 (624)
T 3lvg_A 309 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKP-LLLNDLLMVL-SPRLDH--- 381 (624)
T ss_dssp HHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GCSCSHHHHHHHHHHTTSCC-TTSHHHHHHH-CTTCCS---
T ss_pred HHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--HcchHHHHHHHHHHHHHhCh-HHHHHHHHhc-cccCCh---
Confidence 8888888888888775431 11111 02233333333333322210 0000000000 001111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHH-HHHHHHHhcCChHHHH------------HHHHHHHhCCCCCCHHH
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYT-TMILGYGQHGMSERAL------------SLFRSMKGCGIEPDAIT 616 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~------------~~~~~m~~~g~~p~~~~ 616 (813)
+-.+..+.+.|++.-....+......|...-| ++-..|....+++.-. .+-+++.++. -...
T Consensus 382 --~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHe---L~eF 456 (624)
T 3lvg_A 382 --TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHE---LIEF 456 (624)
T ss_dssp --TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCS---SHHH
T ss_pred --HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCc---hHHH
Confidence 12233444455544444444444444444333 3344555555554322 2223333221 1111
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHh
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLH 696 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 696 (813)
-..-...|.+.+++++++.+.+ ++ ++ |.-.++....+|+.+-|.++++-....++.- .+.+.+..|...
T Consensus 457 RrIAA~LYkkn~rw~qsi~l~K---kD-kl------ykDAietAa~S~~~elaeeLL~yFv~~g~~E-cF~a~LytCYdL 525 (624)
T 3lvg_A 457 RRIAAYLFKGNNRWKQSVELCK---KD-SL------YKDAMQYASESKDTELAEELLQWFLQEEKRE-CFGACLFTCYDL 525 (624)
T ss_dssp HHHHHHHHHTTCHHHHHSSCSS---TT-CC------TTGGGTTTTTCCCTTHHHHHHHHHHHHCSTH-HHHHHHHHTSSS
T ss_pred HHHHHHHHHhcccHHHHHHHHH---hc-cc------HHHHHHHHHHcCCHHHHHHHHHHHHHcCchH-HHHHHHHHHhhc
Confidence 2222234566777777765432 11 22 2223344556666666666666554444433 556666666555
Q ss_pred CCHHHHHHH
Q 046631 697 GHSELAEVV 705 (813)
Q Consensus 697 g~~~~a~~~ 705 (813)
=+.+.+.++
T Consensus 526 lrpDvVlEl 534 (624)
T 3lvg_A 526 LRPDVVLET 534 (624)
T ss_dssp SSCHHHHHH
T ss_pred cChHHHHHH
Confidence 555555444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0073 Score=51.49 Aligned_cols=86 Identities=15% Similarity=-0.048 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC---CHHHHHHHHHHhCcC--C-ChHHHHHHHHHHHHHhCCHHHH
Q 046631 629 LVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVG---KVVEAYEFVKELGEE--G-NVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 629 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~a 702 (813)
.+..+.+.|.+.... +. ++..+...+..++++.+ ++++++.++++.-.. | ...+.+..|.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344455555554432 22 45666666666666665 445666666655222 2 2344556666666666666666
Q ss_pred HHHHHHHhcCCCCC
Q 046631 703 EVVAKKLLEMDTRN 716 (813)
Q Consensus 703 ~~~~~~~~~~~p~~ 716 (813)
.+.++++++.+|++
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 66666666666665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0031 Score=50.25 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=54.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch-hHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 689 LLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG-YHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 689 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.+..+...|++++|+..++++++.+|.+ +. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVG--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4567788999999999999999999998 88 99999999999999999999999998653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.049 Score=54.30 Aligned_cols=136 Identities=14% Similarity=-0.005 Sum_probs=90.2
Q ss_pred CCHhHHHHHHHHHHh--cC---ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhc----cC----cHHHHHHHHHHHHH
Q 046631 577 KNSVTYTTMILGYGQ--HG---MSERALSLFRSMKGCGIEPDAI-TFVAVLSACSY----AG----LVDEGLQIFDLMQQ 642 (813)
Q Consensus 577 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~----~g----~~~~a~~~~~~~~~ 642 (813)
.+..+|...+.+... .+ ...+|+.+|++.++ ..|+.. .+..+..++.. .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 366667766655432 22 34788999999988 677643 33333333321 10 11111112222111
Q ss_pred hcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 643 EYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 643 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
. ...| +..+|..+...+...|++++|+..++++ ..+|+.. .|..+...+...|+.++|.+.+++++.++|.+
T Consensus 270 ~-~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~-a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 L-PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp C-GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred c-ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1 2234 5888988888888889999999999997 3445544 78888899999999999999999999999986
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.016 Score=49.48 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCCHHH
Q 046631 594 MSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG---LVDEGLQIFDLMQQEYKIQP--STEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 668 (813)
....+.+-|.+..+.|. ++..+...+..++++++ ++++++.+++...+. . .| +...+-.|.-++.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 34556666666666553 66666667777777777 666888888887765 2 25 25556667777788888888
Q ss_pred HHHHHHHh-CcCCChH
Q 046631 669 AYEFVKEL-GEEGNVL 683 (813)
Q Consensus 669 A~~~~~~~-~~~~~~~ 683 (813)
|.++++.+ ..+|+..
T Consensus 90 A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCCCCH
Confidence 88888776 4555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.19 Score=57.92 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=111.2
Q ss_pred HHHHHHCCCcHHHHH-HHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCH
Q 046631 383 ISAFVQNGLDDEGLM-LVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLI 461 (813)
Q Consensus 383 i~~~~~~g~~~~A~~-~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (813)
.......+++++|.+ ++.. + ++......++..+.+.|..+.|.++.+.- ..-.......|++
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-----------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ-----------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-----------HHHHHHHHHHTCH
T ss_pred HhHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc-----------chheehhhhcCCH
Confidence 344456788888877 5521 1 11222366677777888888877655311 1224556789999
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 046631 462 KTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIR 541 (813)
Q Consensus 462 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 541 (813)
++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+-+....
T Consensus 669 ~~A~~~~~~~~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 669 TLARDLLTDES----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHHTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999987765 567999999999999999999999998753 33344444456666666665555555
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 046631 542 YLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRS 604 (813)
Q Consensus 542 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 604 (813)
.|. ++....+|.+.|++++|.+++. +.+++++|..+-+.
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 442 4445556667777777766653 45667777766554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.023 Score=45.60 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=57.0
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhCc--------CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKELGE--------EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG 720 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 720 (813)
+..-...|+..+.+.|+++.|..+++.... .....+++..|..++.+.|+++.|...+++++++.|++ +.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~--~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH--QR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HH
Confidence 445556778888888888888888777521 12455689999999999999999999999999999998 55
Q ss_pred hHH
Q 046631 721 YHV 723 (813)
Q Consensus 721 ~~~ 723 (813)
+..
T Consensus 82 ~~~ 84 (104)
T 2v5f_A 82 ANG 84 (104)
T ss_dssp HHH
T ss_pred HHh
Confidence 533
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.038 Score=43.08 Aligned_cols=68 Identities=13% Similarity=-0.036 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHhccCC---HHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 649 STEHYCCVADMLGRVGK---VVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
++..+..++.++...++ .++|..++++. ..+|+.+..+..++..+.+.|++++|+..++++++.+|.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46667777777654443 67777777765 5667666677777888888888888888888888887774
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.16 Score=44.39 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=80.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046631 556 DMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQ 635 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 635 (813)
+....+|+++.|.++.+++ .+...|..|......+|+++-|.+.|.+... |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888887765 4567888888888888888888888887654 4444445556677666555
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 636 IFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 636 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
+-+....+ | -++.....+.-.|+++++.+++.+...-|... -....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~-------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY-------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH-------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH-------HHHHHcCcHHHHHHHHHHh
Confidence 44433322 2 24455566667788888888777653311111 1123355566666665544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=2.4 Score=46.07 Aligned_cols=307 Identities=9% Similarity=-0.009 Sum_probs=143.6
Q ss_pred HHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--chHHHHHHHHHhcCCHHHH
Q 046631 387 VQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE--GMESYLIDMYAKSGLIKTA 464 (813)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 464 (813)
.+.|+++.+..+...+...-+. .-..|..+...+. ....+ ++...+.+..-.+- .+...-+..+.+.+++...
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~-~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLM-NQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGG-GCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCcc-cCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 4567777776666555332221 1123333322221 11222 44444444433332 4556667777888888887
Q ss_pred HHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHH--HHHHHHHHHHc
Q 046631 465 RQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIEL--GKQLHGFSIRY 542 (813)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~ 542 (813)
..++.. . ..+...--....+....|+..+|......+-..| .........++..+.+.|.+.. ...=+..+...
T Consensus 92 l~~~~~-~--p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~ 167 (618)
T 1qsa_A 92 LAFSPE-K--PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKA 167 (618)
T ss_dssp HHHCCS-C--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHhccC-C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Confidence 776554 2 2233333334566777888777777777665554 2223334455555554443321 11111111111
Q ss_pred C-----------CCCch-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 543 L-----------LDQNV-FVGTSLIDMYSKSGVINYAANVFAKIPEKNSV---TYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 543 ~-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
| +.++. .....++..+.+. ..+....... .++.. .+...+.-+.+ .+.+.|...|.....
T Consensus 168 ~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~ 242 (618)
T 1qsa_A 168 GNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQ 242 (618)
T ss_dssp TCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhh
Confidence 1 11111 1111222222111 1112221111 11111 11111222222 366778888877754
Q ss_pred CCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCC-Ch
Q 046631 608 CGIEPDAIT----FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEG-NV 682 (813)
Q Consensus 608 ~g~~p~~~~----~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 682 (813)
.+ ..+... ...+.......+...++...+...... .++.......+....+.|+++.|...|+.|...+ ..
T Consensus 243 ~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~ 318 (618)
T 1qsa_A 243 AQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEK 318 (618)
T ss_dssp HT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGS
T ss_pred cc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccccc
Confidence 32 223222 222332333444344555555554432 2333333444444556788888888888886543 22
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
......+..++...|+.++|..+++++.+
T Consensus 319 ~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 319 DEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 32344556666777888888888887764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.61 Score=38.12 Aligned_cols=140 Identities=10% Similarity=0.100 Sum_probs=90.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEA 669 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 669 (813)
.-.|..++..++..+.... .+..-++-+|--....-+-+-..+.++.+-+-|.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 4457777777777777653 233334444433333344455555555554333322 34444444
Q ss_pred HHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 670 YEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
..-+-.+... . ...+.-+..+..+|+-++-.+++..++.-++.+ |....-++.+|.+.|+..+|.+++.++=++|
T Consensus 81 i~C~~~~n~~--s-e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~--~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 81 VECGVINNTL--N-EHVNKALDILVIQGKRDKLEEIGREILKNNEVS--ASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHTTCC--C-HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcch--H-HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCC--hHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4444443221 1 145556777788899999999999976666555 8999999999999999999999999999998
Q ss_pred Cc
Q 046631 750 LR 751 (813)
Q Consensus 750 ~~ 751 (813)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 75
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.36 Score=55.59 Aligned_cols=130 Identities=8% Similarity=0.007 Sum_probs=78.0
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChH
Q 046631 517 ASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSE 596 (813)
Q Consensus 517 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 596 (813)
..++..+.+.|..+.|.++.+. . ..-.......|++++|.++.+.+. +...|..|...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 4444555555666655554321 1 111344567899999999887664 5678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 597 RALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 597 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
.|.+.|.++.. |..+...+...|+.+...++.+..... | .++....+|.+.|++++|++++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 99999888754 334444445566665554444333322 1 1233344455566666666655544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.047 Score=52.02 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=56.0
Q ss_pred HHHHHHHHHHh-CcCCC--hHHHHHHHHHHHHH-----hCCHHHHHHHHHHHhcCCCC-CCCchhHHHHHHHHHhc-CCc
Q 046631 666 VVEAYEFVKEL-GEEGN--VLEIWGSLLGSCRL-----HGHSELAEVVAKKLLEMDTR-NSMPGYHVLLSNIYAEE-GNW 735 (813)
Q Consensus 666 ~~~A~~~~~~~-~~~~~--~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~-~~~~~~~~~l~~~~~~~-g~~ 735 (813)
..+|...+++. ..+|. ....|..|+..|.+ -|+.++|++.|+++++++|+ + ...++.+++.|+.. |+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~--id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD--PDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC--SHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHhcCCH
Confidence 34455545443 44454 22266666666666 37888888888888888884 4 67777777777774 778
Q ss_pred HHHHHHHHHHHHCCCc
Q 046631 736 ENVDKVRKEMRERGLR 751 (813)
Q Consensus 736 ~~A~~~~~~m~~~~~~ 751 (813)
++|.+.+++.....+.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888765543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.21 Score=40.82 Aligned_cols=94 Identities=16% Similarity=-0.056 Sum_probs=68.5
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHH---HHHHHHHhCcCC---ChHHHHHHHHHHHHHhCCHHH
Q 046631 628 GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVE---AYEFVKELGEEG---NVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 628 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 701 (813)
..+..+.+.|.+.... |. |+..+-..+..++.+..+..+ ++.+++++-... ...+....|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344555555555443 33 677777788888888886655 888888875443 234467788899999999999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHH
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
|.+.++.+++.+|++ ..+..+.
T Consensus 93 A~~~~~~lL~~eP~n--~QA~~Lk 114 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQN--NQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHH
T ss_pred HHHHHHHHHHhCCCC--HHHHHHH
Confidence 999999999999998 6554443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.36 E-value=1 Score=39.42 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=67.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHH
Q 046631 452 IDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIEL 531 (813)
Q Consensus 452 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 531 (813)
.+...++|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344567888888888887764 567899999999999999999988887543 2233333444556555
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP 575 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (813)
...+-+.....|- ++.....+.-.|+++++.++|.+..
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5554444444431 4444555556666666666665443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.12 Score=42.35 Aligned_cols=81 Identities=9% Similarity=-0.051 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHH---HHHHHHHHhcCC-C-CCCCchhHHHHHHHHHhcCCcHHH
Q 046631 665 KVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSEL---AEVVAKKLLEMD-T-RNSMPGYHVLLSNIYAEEGNWENV 738 (813)
Q Consensus 665 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~~~l~~~~~~~g~~~~A 738 (813)
.+..+.+.+.+. ...+...++-..+.|++.+..+... ++.+++.++..+ | .. ..+...|+-.+.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~--Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ--RDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH--HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHhhhHHHH
Confidence 344444444443 2223444477788899988876555 999999999887 5 33 67788899999999999999
Q ss_pred HHHHHHHHH
Q 046631 739 DKVRKEMRE 747 (813)
Q Consensus 739 ~~~~~~m~~ 747 (813)
.+..+.+.+
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999995
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.033 Score=53.11 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhcc-----CCHHHHHHHHHHh-CcCCCh-HHHHHHHHHHHHHh-CC
Q 046631 630 VDEGLQIFDLMQQEYKIQPS---TEHYCCVADMLGRV-----GKVVEAYEFVKEL-GEEGNV-LEIWGSLLGSCRLH-GH 698 (813)
Q Consensus 630 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~~~~-~~~~~~l~~~~~~~-g~ 698 (813)
..+|...+++.. .+.|+ -..|..|+..|.+. |+.++|.+.|++. ...|+. .+++......++.. |+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 345555555555 34665 44677777777763 7777777777775 455543 44666677776664 77
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
.+++.+.+++++...|... |. ..+.+.. +-++|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~-P~--~~lan~~----~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESV-PH--NKLLVIL----SQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGC-SS--CHHHHHH----HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCC-CC--hhHHHHH----HHHHHHHHHHHhH
Confidence 8888888888888777621 11 1222332 2356666665554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.24 Score=39.50 Aligned_cols=64 Identities=13% Similarity=-0.049 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCC-----CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDT-----RNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
-...|+..+...|+++.|...++++++..+ ....+..+..|+.+|.+.|++++|..+++++.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345788899999999999999999987531 1122667889999999999999999999999853
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.66 Score=38.62 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
....|.-++.+.|++++|.+..+.+++.+|++
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 34444444444555555555555555555544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.33 Score=39.84 Aligned_cols=61 Identities=5% Similarity=-0.089 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCC---HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 685 IWGSLLGSCRLHGH---SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 685 ~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
+-..+.|++.+..+ ..+++.+++.++..+|.. ...++..|+-.+.+.|++++|.++.+.+.
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44445555555443 234666666666555521 03455556666666666666666666666
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.43 Score=52.87 Aligned_cols=59 Identities=15% Similarity=-0.005 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
...-...|...|+++.|+.++++++..-|.+ ...+..|+.+|.+.|+|+.|+-.+..+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse--F~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDS--FESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchh--hHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3334566777899999999999999999998 8899999999999999999999888774
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.25 E-value=12 Score=36.66 Aligned_cols=124 Identities=13% Similarity=0.080 Sum_probs=74.1
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHH----HHHHHCCCCCCHhhHHHHHHHhhCCCChh-----H
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQF----RMMLRMGIRPSTISFVNVFPALSSLGDYK-----S 244 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-----~ 244 (813)
+++++|.+++-. -...+.+.|+...|-++. +...+.++++|..+...++..+.....-+ -
T Consensus 49 k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~f 117 (336)
T 3lpz_A 49 GNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRF 117 (336)
T ss_dssp TCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred cCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHH
Confidence 888888887532 234566678777766655 55566788999888888888776655322 1
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCC
Q 046631 245 ADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNN 308 (813)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 308 (813)
..+...+-.+.|..-.-|+.....+...|.+.+++.+|+..|=....+.+..+..++..+...+
T Consensus 118 i~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 118 VKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 2223334444442211467777778888888888888887774222222345544444443333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.09 E-value=12 Score=36.39 Aligned_cols=167 Identities=7% Similarity=0.030 Sum_probs=95.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHhc
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVA----FRQMLEHNVTPNVVTIASVLPACN 524 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 524 (813)
.++..=|.+.+++++|++++..-. ..+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 346667788888888887765432 234555665555443 344445677777777766666655
Q ss_pred cCCChH-HHHHHHHHHHH----cC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhc---CC
Q 046631 525 PMGNIE-LGKQLHGFSIR----YL--LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQH---GM 594 (813)
Q Consensus 525 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 594 (813)
....-+ .=..+.+.+++ .| -.-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 432111 12333344433 22 2347778888899999999999999887633222455555555444443 33
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046631 595 SERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 595 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 643 (813)
..++--. .-..++ -|.-.|++..|..+++...+.
T Consensus 184 ~~e~dlf--------------~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAEF--------------FSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHH--------------HHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHHH--------------HHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 2222111 111122 345678888888888876644
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.00 E-value=2.9 Score=34.33 Aligned_cols=75 Identities=16% Similarity=0.066 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHhccCCH---HHHHHHHHHhC-cCC-ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh
Q 046631 647 QPSTEHYCCVADMLGRVGKV---VEAYEFVKELG-EEG-NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 647 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
.|+..+-..+..++.+..+. .+++.+++++- ..| ...+.+..|.-++.+.|++++|.+..+.+++.+|++ ..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N--~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN--KQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC--HHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC--HHH
Confidence 35666666667777766643 45666766652 333 344578889999999999999999999999999998 554
Q ss_pred HH
Q 046631 722 HV 723 (813)
Q Consensus 722 ~~ 723 (813)
..
T Consensus 115 ~~ 116 (134)
T 3o48_A 115 GA 116 (134)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.69 E-value=1.7 Score=37.32 Aligned_cols=55 Identities=16% Similarity=0.019 Sum_probs=25.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCC-------hhHHHHHHHHHhccCCHHHHHHHHHH
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKIQPS-------TEHYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
+..+...|.++.|+-+.+.+....+-.|+ ..++..+++++...|++..|...|++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 33444455555555544443322122222 22444555555555555555555554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.63 E-value=6.2 Score=32.39 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=87.2
Q ss_pred HHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHH
Q 046631 387 VQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQ 466 (813)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 466 (813)
.-.|..++..+++.+..... +..-|+.+|.-....-+-+-..++++.+-+ ..+ ...||++.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD---------is~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD---------LDKCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC---------GGGCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhh---hcC---------cHhhhcHHHHHH
Confidence 44678888888888876642 334455555444444444444444443322 222 122333333333
Q ss_pred HHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCC
Q 046631 467 IFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLD 545 (813)
Q Consensus 467 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 545 (813)
.+-.+. .+....+.-++.+...|+-++..+++.++.. +.+|+......+..||.+.|+..++.+++.+.-+.|++
T Consensus 83 C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 333332 3444566667888888999988888888644 34778888888888999999999988888888777753
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.53 E-value=0.98 Score=38.78 Aligned_cols=32 Identities=6% Similarity=-0.010 Sum_probs=16.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhCcCCChH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKELGEEGNVL 683 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 683 (813)
.--.+..+|.+.|++++|+.+++.++..-..+
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 33345555555666666666655554444333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.38 E-value=6.6 Score=40.86 Aligned_cols=316 Identities=9% Similarity=0.034 Sum_probs=156.4
Q ss_pred CCcHHHHHHHHHHHHC-----CCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHH----HHHHhcCC
Q 046631 390 GLDDEGLMLVYEMQKQ-----GFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLI----DMYAKSGL 460 (813)
Q Consensus 390 g~~~~A~~~~~~m~~~-----g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~ 460 (813)
|++++|++.+-.+.+. +..........++..|...++++...+.+..+.+...........++ ........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5678888877666542 23445666778888898999998887777766655433332233333 33333333
Q ss_pred HH--HHHHHHhhcCCCCC---C-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChH
Q 046631 461 IK--TARQIFEKNDSGDR---D-----QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIE 530 (813)
Q Consensus 461 ~~--~A~~~~~~~~~~~~---~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 530 (813)
.+ .-..+.+.+..... - ......|...|...|++.+|.+++.++...-...+....
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~-------------- 175 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE-------------- 175 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH--------------
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH--------------
Confidence 22 22333333321111 1 112355677788888888888888887542111111110
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----C---CC--HhHHHHHHHHHHhcCChHHHHH
Q 046631 531 LGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP-----E---KN--SVTYTTMILGYGQHGMSERALS 600 (813)
Q Consensus 531 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~---~~--~~~~~~li~~~~~~g~~~~A~~ 600 (813)
-+..+...+..|...+++.+|..++.++. . |+ ...+..++..+...+++.+|..
T Consensus 176 ----------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~ 239 (445)
T 4b4t_P 176 ----------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ 239 (445)
T ss_dssp ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 01123333444555555555555544432 0 11 2234555556666667766666
Q ss_pred HHHHHHhC-CCCCCHHHHH----HHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc--CCHHHHHHHH
Q 046631 601 LFRSMKGC-GIEPDAITFV----AVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRV--GKVVEAYEFV 673 (813)
Q Consensus 601 ~~~~m~~~-g~~p~~~~~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~ 673 (813)
.|.+.... ...-|...+. .++....-.+....-..++...... ..-++...|..++.+|... .+|+.+.+.+
T Consensus 240 ~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~ 318 (445)
T 4b4t_P 240 YLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIVQKTY 318 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHT
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHHHHHH
Confidence 66655431 0111221111 1111111111111112222233333 2234577788888888754 4677777777
Q ss_pred HHhCcC-CCh------HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 674 KELGEE-GNV------LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 674 ~~~~~~-~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
...-.. +.. ..-|..|......|+ ...+.+ |-. ......++..+.- ..++++..+.+|.
T Consensus 319 ~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehn-----l~~i~k-----~Ys--~I~l~~la~lL~l--~~~evE~~ls~mI 384 (445)
T 4b4t_P 319 EPVLNEDDLAFGGEANKHHWEDLQKRVIEHN-----LRVISE-----YYS--RITLLRLNELLDL--TESQTETYISDLV 384 (445)
T ss_dssp CSSTTTCCSSCCCSCSSHHHHHHHHHHHHHH-----HHHHHH-----HEE--EEEHHHHHHHHTS--CHHHHHHHHHHHH
T ss_pred HHHhcccchhhhcchhhHHHHHHHHHHHHHH-----HHHHHH-----Hhc--eeeHHHHHHHhCc--CHHHHHHHHHHHH
Confidence 654221 111 114555555554332 111111 111 3334555555532 4678899999998
Q ss_pred HCCC
Q 046631 747 ERGL 750 (813)
Q Consensus 747 ~~~~ 750 (813)
..|.
T Consensus 385 ~~g~ 388 (445)
T 4b4t_P 385 NQGI 388 (445)
T ss_dssp HHTS
T ss_pred HCCC
Confidence 7663
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.29 E-value=1.5 Score=36.81 Aligned_cols=53 Identities=9% Similarity=0.001 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHhC-cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 664 GKVVEAYEFVKELG-EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 664 g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
++.++|.++|+.+. ....-.-+|-.....-.++|+...|.+++.+++.+.|.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666651 122224488888888889999999999999999999987
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.22 E-value=14 Score=35.84 Aligned_cols=103 Identities=10% Similarity=0.059 Sum_probs=63.8
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHH----HHHHHHCCCCCCHhhHHHHHHHhhCCCC--h---hH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQ----FRMMLRMGIRPSTISFVNVFPALSSLGD--Y---KS 244 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~---~~ 244 (813)
+++++|.+++-. -...+.+.|++..|-++ .+...+.+++++......++..+..... . +-
T Consensus 47 ~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~f 115 (312)
T 2wpv_A 47 KSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDV 115 (312)
T ss_dssp TCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHH
T ss_pred cCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHH
Confidence 788888877532 23445667887776665 4555667888888888877777655331 1 22
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHh
Q 046631 245 ADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFD 287 (813)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 287 (813)
..+...+..+.|..-.-++.....+...|.+.|++.+|+..|-
T Consensus 116 i~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 116 ITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 2333333344432111366777777777887777777777664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.02 E-value=5.6 Score=33.09 Aligned_cols=62 Identities=15% Similarity=0.045 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 612 PDAITFVAVLSACSYAG---LVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 612 p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
|+..+-..+..++.++. +..+++.+++.+.+. .|+ ....-.|.-++.+.|++++|.++.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444444444444433 233445555544433 231 233334444455555555555555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.74 E-value=3.5 Score=49.15 Aligned_cols=143 Identities=13% Similarity=0.046 Sum_probs=68.7
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----C-----H---------
Q 046631 518 SVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK----N-----S--------- 579 (813)
Q Consensus 518 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-----~--------- 579 (813)
.++..+...+..+.+..+.... +.+....-.+..+|..+|++++|.+.|++.... + .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3445555556665555443221 223333345566677888888888888776421 0 0
Q ss_pred --------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC
Q 046631 580 --------VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA----ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQ 647 (813)
Q Consensus 580 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 647 (813)
.-|..++..+.+.+.++.++++-+..++..-.-+. ..|..+..++...|++++|...+-.+-.. .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 11334444455555555555555544432111111 12444455555555555555554444321 1
Q ss_pred CChhHHHHHHHHHhccCCHHH
Q 046631 648 PSTEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 648 p~~~~~~~l~~~~~~~g~~~~ 668 (813)
--...+..|+..++..|..++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhCCChhh
Confidence 123344445555555554433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.51 E-value=1.1 Score=37.63 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=45.3
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCc
Q 046631 695 LHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 751 (813)
..+|.++|..+|+.++..... ++..++..+..-.++|+...|.+++.+....+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKk--FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKK--FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 337999999999999887333 3777888888888999999999999999987653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.48 E-value=24 Score=36.62 Aligned_cols=185 Identities=9% Similarity=0.056 Sum_probs=122.7
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc-CCCCchh--HHHHHHHHHHhcCC
Q 046631 492 GLLEEAFVAFRQMLE-----HNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY-LLDQNVF--VGTSLIDMYSKSGV 563 (813)
Q Consensus 492 ~~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~li~~~~~~g~ 563 (813)
|++++|++.+-.+.+ .+..........++..|...++++...+.+..+.+. |..+... ..+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 778999988766654 234556677888999999999999988877766654 4333221 22223333333333
Q ss_pred H--HHHHHHHhhCCC---C-------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCH---HHHHHHHHHHhc
Q 046631 564 I--NYAANVFAKIPE---K-------NSVTYTTMILGYGQHGMSERALSLFRSMKGC--GIEPDA---ITFVAVLSACSY 626 (813)
Q Consensus 564 ~--~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~~~~~ll~a~~~ 626 (813)
. +.-..+.+.+.. . .......|...|...|++.+|..++.++... |..... ..+..-++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 233344444331 1 1224466788899999999999999998643 322221 256667778999
Q ss_pred cCcHHHHHHHHHHHHHh-cCCCC--C--hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 627 AGLVDEGLQIFDLMQQE-YKIQP--S--TEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~-~~~~p--~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
.+++.+|..++.++... +...+ + ...+.+.+..+...+++.+|...|.++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999987532 12222 2 456788888999999999998877665
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.80 E-value=35 Score=34.48 Aligned_cols=92 Identities=10% Similarity=-0.047 Sum_probs=42.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHhc-CCCCCh----hHH
Q 046631 584 TMILGYGQHGMSERALSLFRSMKGCGIEPDA-----ITFVAVLSACSYAGLVDEGLQIFDLMQQEY-KIQPST----EHY 653 (813)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~----~~~ 653 (813)
-++..|...|++.+|.+++.++.+.=-..|. ..+..-+..|...+++.++...+....... .+.+++ ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3455566666666666666655542111111 123333445555666666666655554321 111221 122
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHH
Q 046631 654 CCVADMLG-RVGKVVEAYEFVKE 675 (813)
Q Consensus 654 ~~l~~~~~-~~g~~~~A~~~~~~ 675 (813)
.+-+..+. ..++|.+|...|-+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHH
Confidence 22333344 55666666555444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.49 E-value=9.3 Score=38.64 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIP 575 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (813)
....|...|.+.|+.++..+++....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45567777778888777777776654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.48 E-value=35 Score=33.34 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=94.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhc
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAF----RQMLEHNVTPNVVTIASVLPACN 524 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 524 (813)
.++..=|.+.+++++|++++..-. ..+.+.|+..-|-++- +-..+.++++|..+...++..+.
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 346666777888888877765422 2344555555444433 33445667777777666666665
Q ss_pred cCCChH-HHHHHHHHHHH----cC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHH
Q 046631 525 PMGNIE-LGKQLHGFSIR----YL--LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSER 597 (813)
Q Consensus 525 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 597 (813)
....-+ .=..+.+.+++ .| -.-|+.....+...|.+.+++.+|+..|-.-.++.+..+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 544311 11223333332 23 344677888889999999999999998853223334566555544444332111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046631 598 ALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQ 642 (813)
Q Consensus 598 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 642 (813)
++...-..++ -|...+++..|..+++...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1111222222 35567788888887766654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.36 E-value=7.1 Score=39.78 Aligned_cols=73 Identities=8% Similarity=0.057 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hcCCCCChhHHHH
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQ----EYKIQPSTEHYCC 655 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 655 (813)
...++..+...|++++|+..++.+.... +-++..+..++.++...|+..+|++.|+...+ +.|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445666777888888888888877642 44666888888888888888888888877644 3588887665433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.18 E-value=5.7 Score=37.24 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=71.3
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHH---HHHHHHHHHHHhC
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLE---IWGSLLGSCRLHG 697 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~---~~~~l~~~~~~~g 697 (813)
...+.|+++++++....-++. .| |...-..|+..||-.|+|+.|.+-++.+ ...|.... .|..++.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~------ 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK------ 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH------
Confidence 456788999999888877765 57 5888888999999999999999888776 33443321 2333332
Q ss_pred CHHHHHHHHHHHhcCC--CCC--CCchhHHHHHHH--HHhcCCcHHHHHHHHHHHHC
Q 046631 698 HSELAEVVAKKLLEMD--TRN--SMPGYHVLLSNI--YAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~--p~~--~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~ 748 (813)
|+..-.+++.-+ |.- ..+.....+..+ ....|+.++|.++..++.+.
T Consensus 77 ----aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 ----AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 333333444322 110 003333444333 44569999999999988765
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.63 E-value=6.6 Score=30.24 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHH
Q 046631 393 DEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLI 452 (813)
Q Consensus 393 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 452 (813)
-+..+-++.+....+.|++......+++|.+.+++..|.++++.+...--....+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 356667777777889999999999999999999999999999888765433345555554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.44 E-value=5.4 Score=44.25 Aligned_cols=125 Identities=9% Similarity=0.034 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHhhCCC--CCHhH--HHHHHHHHHhcC-ChHHHHHHHHHHHhC------CCCCCHH---
Q 046631 551 GTSLIDMYSKSGV-INYAANVFAKIPE--KNSVT--YTTMILGYGQHG-MSERALSLFRSMKGC------GIEPDAI--- 615 (813)
Q Consensus 551 ~~~li~~~~~~g~-~~~A~~~~~~~~~--~~~~~--~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~~~--- 615 (813)
...++..+.-.|+ .+.|..+|+++.+ |.... ...++..+...+ +--+|++++.+..+. ...+...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555666 5778888888763 32222 223333333333 234567777666531 1122111
Q ss_pred --------HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCc
Q 046631 616 --------TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGE 678 (813)
Q Consensus 616 --------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 678 (813)
....=..-|...|+++-|+++-++.. .+.|+ ..+|..|+.+|...|+++.|+-.++.++.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 11111334567888888888888877 44775 88888888999999999998888888864
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=82.34 E-value=43 Score=36.45 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 046631 379 WNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASN 423 (813)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 423 (813)
-.++|-.+.++|++++|.++.++.... +.--...|...+..++.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 457888899999999999999776432 11112355556666654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.48 E-value=7.2 Score=30.03 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 493 LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++++-++...-. ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 34456677777778888999999999999999999999999999888765322 2345665554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 813 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 9/157 (5%)
Query: 172 DYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRP-STISFV 230
+ + ++ + V + Y + A+ +R + ++P ++
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYC 275
Query: 231 NVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCL 290
N+ AL G A+ Y ++ + E G + A +++ L
Sbjct: 276 NLANALKEKGSVAEAEDCYN---TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 291 E---RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELD 324
E + + Q EA+ + + + +
Sbjct: 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 0.001
Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 7/143 (4%)
Query: 185 TMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKS 244
T+ + A+ + + + + AV + L + + + N+ G
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG-NLACVYYEQGLIDL 255
Query: 245 ADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGG- 303
A Y ++L + + ++A E G A ++ L +++
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANA---LKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312
Query: 304 --YVQNNHPVEAIELFVQVLELD 324
+ + EA+ L+ + LE+
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVF 335
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 813 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.12 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.05 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.01 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.89 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.87 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.81 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.76 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.67 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.65 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.56 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.55 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.48 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.47 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.4 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.36 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.33 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.28 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.26 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.21 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.18 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.17 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.08 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.05 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.04 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.02 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.93 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.75 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.73 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.6 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.52 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.41 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.33 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.23 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.11 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.11 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.0 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.64 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.09 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.94 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.37 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.96 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.74 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.77 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.4 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3e-20 Score=194.45 Aligned_cols=315 Identities=12% Similarity=0.120 Sum_probs=212.7
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMY 455 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (813)
..+|..+...|.+.|++++|+..+....+... .+.............................................
T Consensus 67 ~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (388)
T d1w3ba_ 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44566666666666777777777666665432 12222222222222233333333333333333332222223333334
Q ss_pred HhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHH
Q 046631 456 AKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQ 534 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 534 (813)
...+....+...+.......| +...+..+...+...|++++|...+++..+. .|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p----------------------- 200 (388)
T d1w3ba_ 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DP----------------------- 200 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CT-----------------------
T ss_pred cccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--Cc-----------------------
Confidence 444444444444443322223 3334444445555555555555555544432 12
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 046631 535 LHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE 611 (813)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 611 (813)
.+...+..+...|...|++++|...|++.. ..+...+..+...+...|++++|+..|++..+. .
T Consensus 201 -----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~ 267 (388)
T d1w3ba_ 201 -----------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--Q 267 (388)
T ss_dssp -----------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--C
T ss_pred -----------ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 234456667777777888888888777655 346677888889999999999999999999884 4
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHH
Q 046631 612 PD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGS 688 (813)
Q Consensus 612 p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~ 688 (813)
|+ ..++..+...+...|++++|.+.++..... .| +...+..++.++.+.|++++|++.+++. ...|+.+.+|..
T Consensus 268 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T d1w3ba_ 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 54 557888889999999999999999988765 45 5888899999999999999999999986 567877779999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 689 LLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 689 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
++.++...|++++|+..++++++++|++ +.++..++.+|.+.|+
T Consensus 345 la~~~~~~g~~~~A~~~~~~al~l~P~~--~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 345 LASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999998 9999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.6e-20 Score=191.28 Aligned_cols=357 Identities=17% Similarity=0.128 Sum_probs=293.8
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCH
Q 046631 382 MISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLI 461 (813)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (813)
+...+.+.|++++|++.|+++.+.. +-+...+..+...+...|+++.|...+..+++..+....++..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 3456778999999999999998763 234667788888899999999999999999999877668888899999999999
Q ss_pred HHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 046631 462 KTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSI 540 (813)
Q Consensus 462 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 540 (813)
++|...+.......+ +...+..........+....+............ ................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhh
Confidence 999999998664444 445555556666666677777766666655443 333444445555666777777777777666
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 046631 541 RYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITF 617 (813)
Q Consensus 541 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 617 (813)
... +.+...+..+...+...|++++|...+++.. ..+..+|..+...+...|++++|+..+++....+ ..+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 553 3356678888899999999999999998765 3467889999999999999999999999998853 4455678
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHH
Q 046631 618 VAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRL 695 (813)
Q Consensus 618 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~ 695 (813)
..+...+...|++++|...|+++.+ +.|+ ..++..++.++...|++++|++.++.. ...|.....+..+...+..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 8888899999999999999999884 4675 888999999999999999999999886 4556666689999999999
Q ss_pred hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 696 HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 696 ~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
.|++++|+..++++++++|++ +..+..++.+|.+.|++++|.+.+++..+
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTC--HHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999998 99999999999999999999999999884
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.4e-13 Score=136.06 Aligned_cols=267 Identities=13% Similarity=0.032 Sum_probs=178.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCCh
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNI 529 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 529 (813)
....+.+.|++++|+..|++.....| +..+|..+..+|...|++++|+..|.+..+.. +-+...+..+...+...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 44556677777777777777655566 56677777777888888888888887777642 12344555555666666666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCG 609 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 609 (813)
++|...+........... .......... . ..+.......+..+...+.+.+|.+.+.+..+..
T Consensus 104 ~~A~~~~~~~~~~~~~~~-~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYA-HLVTPAEEGA-G---------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccchhhHHHhccchH-HHHHhhhhhh-h---------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 666666666554321100 0000000000 0 0011111112233445566788888888887743
Q ss_pred C-CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHH
Q 046631 610 I-EPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIW 686 (813)
Q Consensus 610 ~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 686 (813)
. .++...+..+...+...|++++|+..+++.... .|+ ...|..++.+|.+.|++++|++.++++ ...|+.+.+|
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 2 234567788888899999999999999998855 575 888999999999999999999999886 5577777799
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch-----------hHHHHHHHHHhcCCcHHHHH
Q 046631 687 GSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG-----------YHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-----------~~~~l~~~~~~~g~~~~A~~ 740 (813)
..++.+|...|++++|+..++++++++|++ .. .+..+..++...|+++.+..
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKS--RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcC--hhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999988876 33 23445666666777665543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.9e-13 Score=135.65 Aligned_cols=228 Identities=13% Similarity=0.078 Sum_probs=163.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 046631 483 AMIAGYTQNGLLEEAFVAFRQMLEHNVTPN-VVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKS 561 (813)
Q Consensus 483 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 561 (813)
.....+.+.|++++|+..|+++++. .|+ ..+|..+..++...|+++.|...+....+..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------ 83 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK------------------ 83 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc------------------
Confidence 4566788889999999999988875 343 3344444444444444444444444443322
Q ss_pred CCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----------------HHHHHHHHHh
Q 046631 562 GVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI----------------TFVAVLSACS 625 (813)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------~~~~ll~a~~ 625 (813)
..+...|..+...|...|++++|++.+++.... .|+.. .....+..+.
T Consensus 84 --------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (323)
T d1fcha_ 84 --------------PDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 147 (323)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHH
T ss_pred --------------cccccccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHH
Confidence 124455555555666666666666666665542 22210 1111222334
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHH
Q 046631 626 YAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEV 704 (813)
Q Consensus 626 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 704 (813)
..+...+|...+.+..+...-.++..++..++.++...|++++|+..+++. ...|+...+|..++..+...|++++|+.
T Consensus 148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 227 (323)
T d1fcha_ 148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 227 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHH
Confidence 556778889988888765222335778889999999999999999999986 5677777799999999999999999999
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 705 VAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 705 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.++++++++|++ +..+..+|.+|.+.|++++|.+.|++..+.
T Consensus 228 ~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 228 AYRRALELQPGY--IRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999998 999999999999999999999999998875
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=9.5e-10 Score=108.89 Aligned_cols=225 Identities=14% Similarity=0.093 Sum_probs=165.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046631 479 ATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMY 558 (813)
Q Consensus 479 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (813)
..|+.+...+.+.+.+++|+.+++++++. .|+..+ .|+....++
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~----------------------------------a~~~r~~~l 87 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYT----------------------------------VWHFRRVLL 87 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHH----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChH----------------------------------HHHHHHHHH
Confidence 35667777788888899999999998884 565443 355555556
Q ss_pred HhcC-CHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 046631 559 SKSG-VINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEG 633 (813)
Q Consensus 559 ~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a 633 (813)
...| ++++|+..+++.. ..+..+|+.+...+...|++++|++.++++++ +.|+ ...|..+...+.+.|++++|
T Consensus 88 ~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~A 165 (315)
T d2h6fa1 88 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNE 165 (315)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHH
Confidence 6655 4777777777665 34678888888888899999999999999988 4444 56888888888999999999
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCC------HHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHH
Q 046631 634 LQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGK------VVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVV 705 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 705 (813)
++.++.+++. .|+ ...|+.++.++.+.|. +++|++.+.++ ...|+...+|..+...+.. ...+++...
T Consensus 166 l~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~ 241 (315)
T d2h6fa1 166 LQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNL 241 (315)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHH
T ss_pred HHHHHHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHH
Confidence 9999998854 674 7788877777766654 67888877764 6677777689888777654 446788889
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHhc--CCcHHHHHHHHHH
Q 046631 706 AKKLLEMDTRNSMPGYHVLLSNIYAEE--GNWENVDKVRKEM 745 (813)
Q Consensus 706 ~~~~~~~~p~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m 745 (813)
+++++++.|....+..+..++.+|... +..+.+...+++.
T Consensus 242 ~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka 283 (315)
T d2h6fa1 242 LNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283 (315)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999988888864355566677777543 4444555544444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=8.1e-09 Score=104.74 Aligned_cols=264 Identities=11% Similarity=0.021 Sum_probs=141.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCCC------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHh
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDRD------QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNV-TPNVVTIASVLPAC 523 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~ 523 (813)
....+...|++++|..+|++.....|+ ...++.+...|...|++++|+..|++...... .++...
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-------- 89 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY-------- 89 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH--------
Confidence 344556677777777777654332332 23566667777778888888888777654211 111110
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CC----CHhHHHHHHHHHHhc
Q 046631 524 NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP-------EK----NSVTYTTMILGYGQH 592 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~~ 592 (813)
....+..+...+...|++..|...+.... .+ ....+..+...+...
T Consensus 90 -----------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 146 (366)
T d1hz4a_ 90 -----------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 146 (366)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh
Confidence 01112233333444444444444443321 01 112344455556666
Q ss_pred CChHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhcc
Q 046631 593 GMSERALSLFRSMKGCGI----EPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-----TEHYCCVADMLGRV 663 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~----~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~ 663 (813)
|+++.+...+.+...... .....++......+...++..++...+.+......-..+ ...+..++..+...
T Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 147 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence 666666666666554211 111234444445555666666666666555443221111 23445556666677
Q ss_pred CCHHHHHHHHHHhCcC-C----ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc------CCCCCCCchhHHHHHHHHHhc
Q 046631 664 GKVVEAYEFVKELGEE-G----NVLEIWGSLLGSCRLHGHSELAEVVAKKLLE------MDTRNSMPGYHVLLSNIYAEE 732 (813)
Q Consensus 664 g~~~~A~~~~~~~~~~-~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~~~l~~~~~~~ 732 (813)
|++++|...+++.... + .....+..+...+...|++++|...+++++. ..|.. ...+..++.+|...
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~la~~~~~~ 304 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL--NRNLLLLNQLYWQA 304 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH--HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHH--HHHHHHHHHHHHHC
Confidence 7777777777665211 1 1122455566677777777777777776653 22333 45566677777777
Q ss_pred CCcHHHHHHHHHHHH
Q 046631 733 GNWENVDKVRKEMRE 747 (813)
Q Consensus 733 g~~~~A~~~~~~m~~ 747 (813)
|++++|.+.+++..+
T Consensus 305 g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 305 GRKSDAQRVLLDALK 319 (366)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.4e-09 Score=107.71 Aligned_cols=193 Identities=7% Similarity=0.018 Sum_probs=162.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTTMILGYGQHG-MSERALSLFRSMKGCGIEPD-AITFVAVLSA 623 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a 623 (813)
..++.+...+.+.+..++|+++++++. .| +..+|+....++...| ++++|+..+++.++ +.|+ ..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHH
Confidence 356667777889999999999999887 34 6789999999988876 58999999999998 4555 5588888889
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCC---
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGH--- 698 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~--- 698 (813)
+...|++++|+..++++.+. .|+ ...|..++.++.+.|++++|++.++++ ..+|....+|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhhh---hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 99999999999999999954 785 999999999999999999999999987 5677777799988888777665
Q ss_pred ---HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 699 ---SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 699 ---~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
+++|+..+.++++++|++ ...+..++.++...| .+++.+.++...+..
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~--~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~ 249 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHN--ESAWNYLKGILQDRG-LSKYPNLLNQLLDLQ 249 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHTTTC-GGGCHHHHHHHHHHT
T ss_pred hhhhHHhHHHHHHHHHhCCCc--hHHHHHHHHHHHhcC-hHHHHHHHHHHHHhC
Confidence 578999999999999999 888888888776554 678888888877643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=3.1e-10 Score=114.27 Aligned_cols=227 Identities=9% Similarity=-0.085 Sum_probs=161.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc--CCChHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcCCHHHHH
Q 046631 492 GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNP--MGNIELGKQLHGFSIRYLLDQNVFVG-TSLIDMYSKSGVINYAA 568 (813)
Q Consensus 492 ~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~ 568 (813)
|++++|+..++...+.. +-+...+..+..++.. .++.+++...+..+.+.... +...+ ......+...|..++|.
T Consensus 87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHH
Confidence 34667777777766642 2233344444333333 34467777777776665322 23333 34456777889999999
Q ss_pred HHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC
Q 046631 569 NVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK 645 (813)
Q Consensus 569 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 645 (813)
..++.+.+ .+..+|+.+...+...|++++|...+++..+ +.|+.. .+...+...+..+++...+......
T Consensus 165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~-- 237 (334)
T d1dcea1 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG-- 237 (334)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--
Confidence 99998874 3678899999999999999888776665554 223222 2233345566667788877777643
Q ss_pred CCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHH
Q 046631 646 IQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHV 723 (813)
Q Consensus 646 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~ 723 (813)
.| +...+..++..+...|+.++|.+.+.+. ...|....+|..++..+...|+.++|...++++++++|.. +.+|.
T Consensus 238 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~--~~y~~ 314 (334)
T d1dcea1 238 -RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR--AAYLD 314 (334)
T ss_dssp -CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG--HHHHH
T ss_pred -CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc--HHHHH
Confidence 44 4667778888899999999999988876 5566777799999999999999999999999999999987 88888
Q ss_pred HHHHHHH
Q 046631 724 LLSNIYA 730 (813)
Q Consensus 724 ~l~~~~~ 730 (813)
.|+..+.
T Consensus 315 ~L~~~~~ 321 (334)
T d1dcea1 315 DLRSKFL 321 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.5e-07 Score=95.13 Aligned_cols=300 Identities=10% Similarity=-0.016 Sum_probs=165.2
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhc
Q 046631 379 WNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKS 458 (813)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (813)
.......+...|++++|++++++..+.. |+...... + .++..+...|...
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~-~---------------------------~a~~~lg~~~~~~ 64 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSR-I---------------------------VATSVLGEVLHCK 64 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHH-H---------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHH-H---------------------------HHHHHHHHHHHHC
Confidence 3334455677777788877777776642 22111100 0 0123355666777
Q ss_pred CCHHHHHHHHhhcCCC---CC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHhccCC
Q 046631 459 GLIKTARQIFEKNDSG---DR----DQATWNAMIAGYTQNGLLEEAFVAFRQMLEH----NVTPNVVTIASVLPACNPMG 527 (813)
Q Consensus 459 g~~~~A~~~~~~~~~~---~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~t~~~ll~~~~~~~ 527 (813)
|++++|...|++.... .+ ....+..+...+...|++..+...+.+.... +......
T Consensus 65 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~------------- 131 (366)
T d1hz4a_ 65 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM------------- 131 (366)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH-------------
T ss_pred CCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhH-------------
Confidence 7777777777653211 11 1234566677888889999998888876541 1111110
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCHhHHHHHHHHHHhcCChHHHH
Q 046631 528 NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--------KNSVTYTTMILGYGQHGMSERAL 599 (813)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~ 599 (813)
....+..+...+...|+++.|...+..... ....++..+...+...++...+.
T Consensus 132 -------------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 192 (366)
T d1hz4a_ 132 -------------------HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNAR 192 (366)
T ss_dssp -------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 011223334445555555555555443321 12334444555566667777766
Q ss_pred HHHHHHHhC--CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHH
Q 046631 600 SLFRSMKGC--GIEPDA----ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYE 671 (813)
Q Consensus 600 ~~~~~m~~~--g~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 671 (813)
..+.+.... ...... ..+..+...+...|+.++|...+........-.+. ...+..++.++...|++++|..
T Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 272 (366)
T d1hz4a_ 193 SQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI 272 (366)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 666655431 111111 23444555667778888888877766532111111 3445567778888888888888
Q ss_pred HHHHh-------CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch-------hHHHHHHHHHhcCCcHH
Q 046631 672 FVKEL-------GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG-------YHVLLSNIYAEEGNWEN 737 (813)
Q Consensus 672 ~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-------~~~~l~~~~~~~g~~~~ 737 (813)
.++++ ...+....+|..+...+...|++++|...+++++++.+...... .+.-+...+...++.++
T Consensus 273 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e 352 (366)
T d1hz4a_ 273 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 352 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 77765 22233344677788888888888888888888877644321111 12223334555566666
Q ss_pred HHH
Q 046631 738 VDK 740 (813)
Q Consensus 738 A~~ 740 (813)
+..
T Consensus 353 ~e~ 355 (366)
T d1hz4a_ 353 LEQ 355 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=2.4e-08 Score=95.94 Aligned_cols=164 Identities=9% Similarity=-0.078 Sum_probs=105.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLS 622 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 622 (813)
++.+|+.+..+|.+.|++++|.+.|+++. .| +..+|..+..+|...|++++|+..|++.++. .|+ ......+..
T Consensus 70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 147 (259)
T d1xnfa_ 70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYL 147 (259)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHH
Confidence 44567777888888888888888888776 23 5678888888899999999999999998884 343 333333444
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC----HHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGK----VVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 697 (813)
++.+.+..+....+...... ..++...+.. +..+..... .+.+...+... ...+....+|..++..+...|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 223 (259)
T d1xnfa_ 148 AEQKLDEKQAKEVLKQHFEK---SDKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG 223 (259)
T ss_dssp HHHHHCHHHHHHHHHHHHHH---SCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhHHHHHHHHHHhhc---cchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCC
Confidence 55555655555555554442 2333333332 233322222 22222222111 122344457888999999999
Q ss_pred CHHHHHHHHHHHhcCCCCC
Q 046631 698 HSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~ 716 (813)
++++|...+++++..+|++
T Consensus 224 ~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 224 DLDSATALFKLAVANNVHN 242 (259)
T ss_dssp CHHHHHHHHHHHHTTCCTT
T ss_pred CHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999987
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=1.2e-07 Score=93.52 Aligned_cols=184 Identities=11% Similarity=0.090 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C-HhHHHHHHHHHHhcCChHHHHHHHHH
Q 046631 529 IELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-N-SVTYTTMILGYGQHGMSERALSLFRS 604 (813)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~~ 604 (813)
.+.+..+++...+...+.+...+...+..+.+.|+++.|..+|+++.+ | + ...|..++..+.+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 355666666666544444555666666667777777777777776542 2 2 33567777777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhC-c---
Q 046631 605 MKGCGIEPDAITFVAVLS-ACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELG-E--- 678 (813)
Q Consensus 605 m~~~g~~p~~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~--- 678 (813)
+++.+.. +...|..... -+...|+.+.|..+|+.+.+. .| +...+...++.+.+.|+++.|..+|++.. .
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 7664322 2223333222 233456677777777777654 34 35666677777777777777777777641 1
Q ss_pred CCC-hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 679 EGN-VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 679 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.|. ...+|...+..-..+|+.+.+..+.+++.+..|..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 111 12266666666667777777777777776666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=1.2e-08 Score=98.03 Aligned_cols=193 Identities=12% Similarity=0.041 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSAC 624 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~ 624 (813)
.++..+..+|.+.|++++|.+.|++.. ..++.+|+.+..+|...|++++|+..|+++++. .|+ ..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHH
Confidence 456677889999999999999999876 347889999999999999999999999999994 554 45788888899
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCH
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHS 699 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 699 (813)
...|++++|...|+...+. .|+ ......+...+.+.+..+.+..+.......+.....++. ...+.. .+..
T Consensus 116 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 9999999999999999865 564 555555566666666666555554444222211112222 122211 1223
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 700 ELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 700 ~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
+.+...+.......|.. ...+..++.+|...|++++|.+.+++..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHL--SETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcCccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 33444444444445555 6678889999999999999999999998543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=9.7e-09 Score=103.00 Aligned_cols=233 Identities=7% Similarity=-0.085 Sum_probs=162.0
Q ss_pred HhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhccCCChHH
Q 046631 456 AKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGL--LEEAFVAFRQMLEHNVTPNVVTIA-SVLPACNPMGNIEL 531 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~~~~~~ 531 (813)
...|.+++|...|+......| +...|..+..++...++ +++|+..+.++.+.. +++...+. .....+...+..+.
T Consensus 84 ~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 334456667777776544455 66677777666666554 678888888877753 22333333 33355566777888
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE 611 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 611 (813)
|...++.+++... .+...|+.+..++.+.|++++|...+....+-..... .+...+...+..+++...+....... .
T Consensus 163 Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~ 239 (334)
T d1dcea1 163 ELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR-A 239 (334)
T ss_dssp HHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC-C
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC-c
Confidence 8887777766542 3567788888899999998888766665543222222 23344566677888888888888753 3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHH
Q 046631 612 PDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSL 689 (813)
Q Consensus 612 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l 689 (813)
++...+..+...+...|+.++|...+.+.. ...|+ ...+..++.+|.+.|++++|++.++++ ..+|.....|+.|
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELE---PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHH---hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 334456666667778899999999888776 44674 788899999999999999999999987 5677777788888
Q ss_pred HHHHHH
Q 046631 690 LGSCRL 695 (813)
Q Consensus 690 ~~~~~~ 695 (813)
...+..
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 777664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.76 E-value=5.9e-07 Score=88.26 Aligned_cols=184 Identities=13% Similarity=0.060 Sum_probs=99.0
Q ss_pred CHHHHHHHHhhcCCC-CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHH
Q 046631 460 LIKTARQIFEKNDSG-DR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHG 537 (813)
Q Consensus 460 ~~~~A~~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 537 (813)
..++|..+|++.... .| +...|...+..+...|++++|..+|+++++.........+...+..+.+.|+.+.|..+++
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 345666666654321 23 4556666677777777777777777777654322223345555666666666666666666
Q ss_pred HHHHcCCCCchhHHHHHHHH-HHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC
Q 046631 538 FSIRYLLDQNVFVGTSLIDM-YSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCG-IEP 612 (813)
Q Consensus 538 ~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 612 (813)
.+.+.+.. +...|...... +...|+.+.|..+|+.+.+ .+...|...+..+...|+.+.|..+|++.+... ..|
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 65554321 22222222222 2234556666666665542 245556666666666666666666666655532 222
Q ss_pred C--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 046631 613 D--AITFVAVLSACSYAGLVDEGLQIFDLMQQEY 644 (813)
Q Consensus 613 ~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 644 (813)
+ ...|...+.--...|+.+.+..+++++.+.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2 2345555554455566666666666655543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=6.4e-08 Score=79.16 Aligned_cols=90 Identities=10% Similarity=0.004 Sum_probs=61.9
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
-+..+.+.|++++|+..|++. ...|..+.+|..++.++...|++++|+..++++++++|++ +..|..++.+|...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch--hhHHHHHHHHHHHccC
Confidence 455666667777777766665 4556555567777777777777777777777777777776 6677777777777777
Q ss_pred cHHHHHHHHHHHH
Q 046631 735 WENVDKVRKEMRE 747 (813)
Q Consensus 735 ~~~A~~~~~~m~~ 747 (813)
+++|...+++..+
T Consensus 87 ~~~A~~~~~~a~~ 99 (117)
T d1elwa_ 87 FEEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776663
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=2.1e-07 Score=75.98 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=91.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 697 (813)
-...+...|++++|+..|++.++. .|+ ...|..++.+|.+.|++++|+..+++. ...|+.+..|..++.++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 345678899999999999999855 675 888999999999999999999999886 557777779999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 698 HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
++++|+..++++++++|++ +.++..++++-
T Consensus 86 ~~~~A~~~~~~a~~~~p~~--~~~~~~l~~l~ 115 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANN--PQLKEGLQNME 115 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTC--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHh
Confidence 9999999999999999998 88877776654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=9.1e-08 Score=87.59 Aligned_cols=101 Identities=10% Similarity=-0.043 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHH
Q 046631 612 PDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSL 689 (813)
Q Consensus 612 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l 689 (813)
|+...+......+.+.|++++|+..|+++++. .|+ ...|..++.+|.+.|++++|+..++++ ...|+...+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 34444444455555555555555555555432 342 455555555555555555555555554 3334444455555
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 690 LGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 690 ~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+.++...|++++|+..++++++++|+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 55555555555555555555555444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=3.8e-07 Score=79.44 Aligned_cols=106 Identities=8% Similarity=-0.053 Sum_probs=64.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHH
Q 046631 618 VAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRL 695 (813)
Q Consensus 618 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~ 695 (813)
......|.+.|++++|...|+++.+. .|+ ...|..++.+|...|++++|++.++++ ...|+...+|..++.++..
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 33444556666666666666666643 453 666666666666666666666666654 3455555566666666666
Q ss_pred hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 696 HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 696 ~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
.|++++|...+++++.++|++ +..+..+..+
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~--~~~~~~l~~~ 121 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHD--KDAKMKYQEC 121 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHH
Confidence 666666666666666666665 5555444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=5.4e-07 Score=78.40 Aligned_cols=108 Identities=13% Similarity=-0.032 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVA 657 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 657 (813)
..+......|.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|...|+++++. .|+ ..+|..++
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~~~~a~~~~g 85 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA 85 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH---cccchHHHHHHH
Confidence 34556677888999999999999999984 444 457778888889999999999999988854 675 78899999
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
.+|...|++++|++.+++. ...|+...++..+..+
T Consensus 86 ~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 86 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999988886 4456666555554433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.54 E-value=1.4e-07 Score=76.39 Aligned_cols=92 Identities=15% Similarity=0.051 Sum_probs=83.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE 731 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 731 (813)
...++..+.+.|++++|+..+++. ...|+.+.+|..++.++.+.|++++|+..++++++++|++ +..+..++.+|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc--ccchHHHHHHHHH
Confidence 345678889999999999999986 6677777799999999999999999999999999999999 9999999999999
Q ss_pred cCCcHHHHHHHHHHH
Q 046631 732 EGNWENVDKVRKEMR 746 (813)
Q Consensus 732 ~g~~~~A~~~~~~m~ 746 (813)
.|++++|.+.+++..
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=8.4e-07 Score=79.73 Aligned_cols=123 Identities=12% Similarity=-0.025 Sum_probs=70.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccC
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVG 664 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 664 (813)
...+...|++++|++.|+++ .+|+..+|..+..++...|++++|+..|++.++. .|+ ...|..++.+|.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHHHHHhhc
Confidence 44455666666666666543 2445555666666666666666666666666633 454 566666666666666
Q ss_pred CHHHHHHHHHHhC----cCCC-------------hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 665 KVVEAYEFVKELG----EEGN-------------VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 665 ~~~~A~~~~~~~~----~~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
++++|++.|++.. ..+. ...++..+..++.+.|++++|.+.+++++++.|.
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 6666666665541 1110 0124445555566666666666666666665555
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=9.8e-07 Score=85.73 Aligned_cols=196 Identities=13% Similarity=0.038 Sum_probs=131.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HHH
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPE-----KN----SVTYTTMILGYGQHGMSERALSLFRSMKGCGI---EPD--AIT 616 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~ 616 (813)
|......|..+|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+... .+. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 44456678888999999888887652 12 35788899999999999999999998765211 111 235
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhCc----CC----ChH
Q 046631 617 FVAVLSACS-YAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELGE----EG----NVL 683 (813)
Q Consensus 617 ~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~ 683 (813)
+..+...|. ..|++++|++.+++..+.+....+ ..++..++..|.+.|++++|++.++++.. .+ ...
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 666666664 469999999999987643221222 55688899999999999999999998621 11 112
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhH---HHHHHHHHh--cCCcHHHHHHHHHHH
Q 046631 684 EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH---VLLSNIYAE--EGNWENVDKVRKEMR 746 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~---~~l~~~~~~--~g~~~~A~~~~~~m~ 746 (813)
..+...+..+...|+.+.|...++++.+++|....+.-+ .-+..++.. .+++++|...|+++.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 245566667778899999999999999999864212112 233344443 245777777775433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1e-07 Score=77.95 Aligned_cols=106 Identities=16% Similarity=-0.037 Sum_probs=78.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCC---HHHHHHHHHHhCcC-CCh--HHHHHHHH
Q 046631 618 VAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGK---VVEAYEFVKELGEE-GNV--LEIWGSLL 690 (813)
Q Consensus 618 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~--~~~~~~l~ 690 (813)
..++..+...+++++|.+.|++.... .|+ +.++..++.++.+.++ +++|+.+++++... |.. .++|..|+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 45677778888888888888888854 564 7888888888876554 45688888887433 322 34778888
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 691 GSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
.+|.+.|++++|+..++++++++|++ ..+..++..+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~--~~A~~l~~~I 115 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQN--NQAKELERLI 115 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCC--HHHHHHHHHH
Confidence 88888888888888888888888887 6665555433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=2.3e-06 Score=76.78 Aligned_cols=147 Identities=12% Similarity=-0.027 Sum_probs=114.3
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEG 633 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a 633 (813)
...+...|+++.|.+.|.++.+++..+|..+..+|...|++++|++.|++.++. .|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 455788999999999999999999999999999999999999999999999994 454 55888888999999999999
Q ss_pred HHHHHHHHHhcC-----------CC--CC-hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHHHHHHHhCC
Q 046631 634 LQIFDLMQQEYK-----------IQ--PS-TEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLLGSCRLHGH 698 (813)
Q Consensus 634 ~~~~~~~~~~~~-----------~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 698 (813)
...|++...... .. ++ ..++..++.++.+.|++++|.+.++... ..+.. .++.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~------------~~~~ 157 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSK 157 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG------------GGGH
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------------chHH
Confidence 999999875311 11 11 3556778899999999999999998863 33432 2233
Q ss_pred HHHHHHHHHHHhcCCCC
Q 046631 699 SELAEVVAKKLLEMDTR 715 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~ 715 (813)
.+.|+..+.+....+|.
T Consensus 158 ~~~Al~~~~~~~~~~~~ 174 (192)
T d1hh8a_ 158 IDKAMECVWKQKLYEPV 174 (192)
T ss_dssp HHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHhhhhCCcc
Confidence 45666655555555554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=4.3e-07 Score=82.87 Aligned_cols=96 Identities=5% Similarity=-0.127 Sum_probs=79.7
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 046631 577 KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCC 655 (813)
Q Consensus 577 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 655 (813)
|+...+......|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+.++ .+.|+ ..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 556667777888999999999999999988842 3345578888888999999999999998887 66885 888889
Q ss_pred HHHHHhccCCHHHHHHHHHHh
Q 046631 656 VADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~ 676 (813)
++.+|.+.|++++|+..++++
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999988875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2.6e-06 Score=74.69 Aligned_cols=135 Identities=13% Similarity=-0.031 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADM 659 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 659 (813)
..+......+.+.|++++|+..|++.+.. .|... +..+.-......+ ...+|+.++.+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~------------~~~~~~~~~~~~~--------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYES------------SFSNEEAQKAQAL--------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCC------------CCCSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcc------------ccchHHHhhhchh--------HHHHHHHHHHH
Confidence 34555566777778888888877777652 11100 0000000111111 12357778999
Q ss_pred HhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHH
Q 046631 660 LGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENV 738 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 738 (813)
|.+.|++++|+..+++. ..+|+.+.+|..++.++...|++++|+..++++++++|++ +.....++.+..+.+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n--~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN--KAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886 5678777799999999999999999999999999999998 89998888887766655544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.9e-06 Score=70.15 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=38.5
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC---CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG---HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE 731 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 731 (813)
+++.+...+++++|.+.|++. ...|+.+.++..+++++.+.+ +.++|+.++++++..+|.+....++..+|.+|.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 334444444444444444443 333333334444444443322 2233444444444444332111233444444444
Q ss_pred cCCcHHHHHHHHHHHH
Q 046631 732 EGNWENVDKVRKEMRE 747 (813)
Q Consensus 732 ~g~~~~A~~~~~~m~~ 747 (813)
.|++++|.+.++++.+
T Consensus 85 ~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQ 100 (122)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHH
Confidence 4444444444444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=4e-06 Score=81.26 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=132.0
Q ss_pred CHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 046631 563 VINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGC----GIEPD-AITFVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~ 637 (813)
++++|.++| ......|...|++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|...+
T Consensus 32 ~~~~Aa~~y-----------~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLC-----------VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHH-----------HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHH-----------HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 456666654 44578899999999999999998763 21222 247888899999999999999999
Q ss_pred HHHHHhcCCCCC----hhHHHHHHHHHhc-cCCHHHHHHHHHHhC----cCCC---hHHHHHHHHHHHHHhCCHHHHHHH
Q 046631 638 DLMQQEYKIQPS----TEHYCCVADMLGR-VGKVVEAYEFVKELG----EEGN---VLEIWGSLLGSCRLHGHSELAEVV 705 (813)
Q Consensus 638 ~~~~~~~~~~p~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~ 705 (813)
++..+.+.-..+ ..++..++.+|.. .|++++|++.+++.. ..+. ...++..++..+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 987654221222 5667777777754 699999999998762 2232 233688899999999999999999
Q ss_pred HHHHhcCCCCCCCc-----hhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 706 AKKLLEMDTRNSMP-----GYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 706 ~~~~~~~~p~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
++++....+..... ..+...+.++...|+++.|...+++..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999988776211 23455667788899999999999988754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.28 E-value=4.4e-06 Score=73.25 Aligned_cols=67 Identities=12% Similarity=-0.079 Sum_probs=59.2
Q ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 680 GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 680 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
|....+|..+..++.+.|++++|+..++++++++|.+ +..+..+|.+|...|++++|...+++..+.
T Consensus 74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~--~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN--TKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh--hhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4444578888899999999999999999999999998 899999999999999999999999998853
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=7.2e-06 Score=71.75 Aligned_cols=62 Identities=13% Similarity=-0.078 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+|..+..+|.+.|++++|+..++++++++|.+ +..+..+|.+|...|++++|...+++..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNN--EKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccc--hhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 67788999999999999999999999999999 999999999999999999999999999864
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.21 E-value=0.0002 Score=67.76 Aligned_cols=228 Identities=10% Similarity=-0.053 Sum_probs=142.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|-..+... .|
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G---------------~~------------- 49 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQG---------------QG------------- 49 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT---------------SS-------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC---------------CC-------------
Confidence 34556667677777788888888888877665 222222222222110 00
Q ss_pred HHHhcCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hcc
Q 046631 557 MYSKSGVINYAANVFAKIPE-KNSVTYTTMILGYGQ----HGMSERALSLFRSMKGCGIEPDAITFVAVLSAC----SYA 627 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~----~~~ 627 (813)
...+...|...+....+ .+...+..+...+.. ..+.+.|...+++..+.|.... ...+...+ ...
T Consensus 50 ---~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 50 ---VEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVT 123 (265)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSC
T ss_pred ---cchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCccc
Confidence 12344444444444332 233444444444432 4566788888888877653222 22222222 234
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCH
Q 046631 628 GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR----VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHS 699 (813)
Q Consensus 628 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 699 (813)
.....+...+...... .+...+..|+..|.. ..+...+..+++.....++.. ++..|...+.. ..+.
T Consensus 124 ~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~-A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 124 RDFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSP-GCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTCSSCCCH
T ss_pred chhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccc-cccchhhhcccCcccccch
Confidence 4667777777665532 456677777777765 457778888888877666665 77777776665 4689
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHHHCCC
Q 046631 700 ELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE----EGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 700 ~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 750 (813)
++|+..++++.+.+ + +.....|+.+|.+ ..+.++|.++|++..+.|.
T Consensus 199 ~~A~~~~~~aa~~g--~--~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACELE--N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHTT--C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhHhhhhccc--C--HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 99999999998875 3 6677889998886 4488999999999987764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.18 E-value=1.5e-05 Score=68.23 Aligned_cols=82 Identities=16% Similarity=0.024 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCE
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGY 764 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 764 (813)
++..++.++.+.|++++|+..++++++++|.+ ...|..+|.+|...|++++|...|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~--~ka~~~~g~~~~~lg~~~~A~~~~~~al~l---------------- 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNN--VKALYKLGVANMYFGFLEEAKENLYKAASL---------------- 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchh--hhhhHHhHHHHHHcCCHHHHHHHHHHHHHh----------------
Confidence 67788999999999999999999999999998 899999999999999999999999998843
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 046631 765 VNRFASKDQEHPQSHKIYEMLERLAMEMRN 794 (813)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 794 (813)
+|...++...+..+..++.+
T Consensus 131 ----------~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 131 ----------NPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp ----------STTCHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHH
Confidence 46666677777777776654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.17 E-value=1.8e-05 Score=69.06 Aligned_cols=94 Identities=13% Similarity=0.013 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 651 EHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 651 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
..|..++.+|.+.|++++|+..+++. ...|....+|..++.++...|++++|+..++++++++|++ +.+...+..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n--~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN--KAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--HHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 45777889999999999999999886 5577777799999999999999999999999999999999 88888888887
Q ss_pred HhcCCcH-HHHHHHHHHH
Q 046631 730 AEEGNWE-NVDKVRKEMR 746 (813)
Q Consensus 730 ~~~g~~~-~A~~~~~~m~ 746 (813)
...+... ...+++.+|-
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 6665554 3444555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=1e-05 Score=70.75 Aligned_cols=128 Identities=11% Similarity=-0.014 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHH
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADML 660 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 660 (813)
+......+...|++++|++.|+++++. . ..........+. . .+.| ....|..++.+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~----------~~~~~~~~~~~~---------~-~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--V----------EGSRAAAEDADG---------A-KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--H----------HHHHHHSCHHHH---------G-GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--h----------hhhhhhhhhHHH---------H-HhChhhHHHHHHHHHHH
Confidence 344556677788888888888876641 0 000000000000 0 2234 366788899999
Q ss_pred hccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC
Q 046631 661 GRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG 733 (813)
Q Consensus 661 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 733 (813)
.+.|++++|+..++++ ...|+.+.+|..++.++...|++++|+..++++++++|++ +.....+..++.+..
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n--~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED--KAIQAELLKVKQKIK 159 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHH
Confidence 9999999999998886 6678888899999999999999999999999999999998 888877777665433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=5.2e-06 Score=68.64 Aligned_cols=94 Identities=9% Similarity=0.018 Sum_probs=79.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch-------hHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG-------YHV 723 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-------~~~ 723 (813)
.+..+++.+.+.|++++|++.|++. ...|+...+|..+..+|.+.|++++|+..++++++++|.+ +. .|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc--HHHHHHHHHHHH
Confidence 3556888999999999999999876 5667777799999999999999999999999999998886 44 455
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 724 LLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 724 ~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
.++.++...+++++|.+.+++...
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Confidence 677788899999999999988773
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.08 E-value=1.1e-05 Score=64.59 Aligned_cols=87 Identities=13% Similarity=0.006 Sum_probs=53.3
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCC
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGH 698 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 698 (813)
...+.+.|++++|...|++..+. .|+ +..|..++.++.+.|++++|+..+++. ...|+...+|..++.++...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc---ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 33455566666666666666543 453 666666666666666666666666654 4555555566666666666666
Q ss_pred HHHHHHHHHHHh
Q 046631 699 SELAEVVAKKLL 710 (813)
Q Consensus 699 ~~~a~~~~~~~~ 710 (813)
.++|.+.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666666553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.05 E-value=1.9e-05 Score=68.91 Aligned_cols=62 Identities=13% Similarity=-0.049 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
++..+..++.+.|++++|+..++++++++|.+ ...+..++.+|...|++++|.+.++++.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~--~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSAN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67778899999999999999999999999999 999999999999999999999999999854
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.04 E-value=2.2e-05 Score=67.11 Aligned_cols=128 Identities=9% Similarity=-0.085 Sum_probs=92.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 046631 579 SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVAD 658 (813)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 658 (813)
...+......+.+.|++.+|+..|++.+.. .+... ...-..... .... ....+|..++.
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~---~~~~-----~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLD---KKKN-----IEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHH---HHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHH---hhhh-----HHHHHHhhHHH
Confidence 345666777888888888888888887763 11100 000000000 0000 12346778999
Q ss_pred HHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 659 MLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
+|.+.|++++|++.++++ ..+|....+|..++.++...|++++|+..++++++++|++ +.....+..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n--~~~~~~l~~~~ 145 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN--LDIRNSYELCV 145 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 999999999999999885 6678777799999999999999999999999999999998 77766665544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.02 E-value=0.002 Score=60.56 Aligned_cols=229 Identities=14% Similarity=-0.020 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 046631 448 ESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQ----NGLLEEAFVAFRQMLEHNVTPNVVTIA-SVLPA 522 (813)
Q Consensus 448 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~~-~ll~~ 522 (813)
+..|...+.+.+++++|++.|++... .-+...+..|...|.. ..+...|...+......+...-...+. .....
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~-~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~ 83 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG 83 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccc
Confidence 44567778889999999999998753 2366677777777776 567888888888877765221111111 11122
Q ss_pred hccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 046631 523 CNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLF 602 (813)
Q Consensus 523 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 602 (813)
+....+.+.+...+......|.... ...+...+... .........+...+
T Consensus 84 ~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~---------------------------~~~~~~~~~a~~~~ 133 (265)
T d1ouva_ 84 QGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDG---------------------------KVVTRDFKKAVEYF 133 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHC---------------------------SSSCCCHHHHHHHH
T ss_pred cccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCC---------------------------CcccchhHHHHHHh
Confidence 2334556666666666655543211 11111111110 00122334455555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHH
Q 046631 603 RSMKGCGIEPDAITFVAVLSACSY----AGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR----VGKVVEAYEFVK 674 (813)
Q Consensus 603 ~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 674 (813)
.+.... .+...+..|...+.. ..+...+..+++...+. .+..+...++.+|.. ..++++|+.+|+
T Consensus 134 ~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~ 206 (265)
T d1ouva_ 134 TKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYS 206 (265)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred hhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHh
Confidence 554442 233444444444442 34555666666555543 245555556666654 457888888888
Q ss_pred HhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCC
Q 046631 675 ELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 675 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~ 715 (813)
+..+.++.. .+..|+..|.. ..|.++|...++++.+.+..
T Consensus 207 ~aa~~g~~~-a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 207 KACELENGG-GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHTTCHH-HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhcccCHH-HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 876666665 66677776654 23677788888877766654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=3.2e-06 Score=88.86 Aligned_cols=147 Identities=10% Similarity=-0.013 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--hccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHH
Q 046631 595 SERALSLFRSMKGCGIEPDAITFVAVLSAC--SYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYE 671 (813)
Q Consensus 595 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 671 (813)
+..+++.+++..+....++..-....+..+ ...+.++.++..+... +++.|+ ...+..++..+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~---~~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTV---FNVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 345666666666544334332222211111 2234444454444332 355564 6667778888888888888877
Q ss_pred HHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 672 FVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 672 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
.+++... ++...++..++..++..|++++|+..++++++++|++ +..|..||.+|...|+..+|...|.+...
T Consensus 142 ~~~~al~-~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~--~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 142 PQSSSCS-YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN--GQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp -CCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB--SHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHhC-CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6655421 1222367778888888888888888888888888888 88888888888888888888888887774
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.93 E-value=1.8e-05 Score=66.83 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=68.2
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc----------CCHHHHHHHHHHh-CcCCChHHHHHHHHHHHH
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV----------GKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 694 (813)
.+.+++|+..|+...+. .|+ +.++..++.+|... +.+++|+..++++ ..+|+...+|..++.+|.
T Consensus 10 ~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 34455555555555432 443 45555555554422 3345556555554 445555556666666665
Q ss_pred HhC-----------CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 695 LHG-----------HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 695 ~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
..| ++++|...|+++++++|++ ..++..|+.. .+|.+++.+..+.|+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~--~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN--THYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCH--HHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 443 3688999999999999998 7776666554 467777777776653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=0.011 Score=56.37 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=5.7
Q ss_pred HHHHHHHHCCCcHHHHHHHHH
Q 046631 381 TMISAFVQNGLDDEGLMLVYE 401 (813)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~ 401 (813)
.+..-|.+.|.++.|..+|..
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~ 39 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNN 39 (336)
T ss_dssp ----------CTTTHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHh
Confidence 344444455555555555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.022 Score=54.38 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=59.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcch
Q 046631 268 SAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELD 347 (813)
Q Consensus 268 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 347 (813)
.+.+.+-+.|.++.|..+|..+ .-|.-++..+.+.+++..|.+.+ +.. -+..+|..+...|.+.....
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~-----~d~~rl~~~~v~l~~~~~avd~~-~k~------~~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGA-RKA------NSTRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp ----------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHH-HHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhC-----CCHHHHHHHHHhhccHHHHHHHH-HHc------CCHHHHHHHHHHHHhCcHHH
Confidence 3444444555555555555432 23455555566666666666655 211 12334444444444443332
Q ss_pred HHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcC
Q 046631 348 LGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNL 424 (813)
Q Consensus 348 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 424 (813)
.+..+ . . ....+......++..|-..|.+++.+.+++..... -..+...++.++..+++.
T Consensus 87 la~i~-----~-~----------~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 87 LAQMC-----G-L----------HIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHT-----T-T----------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHH-----H-H----------HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 22110 0 0 01122333455677777777777777777765432 244555566666666654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=3e-05 Score=65.39 Aligned_cols=87 Identities=8% Similarity=-0.044 Sum_probs=73.1
Q ss_pred HhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 660 LGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH----------GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
|.+.+.+++|++.+++. ...|+.+++|..++.++... +.+++|+..++++++++|++ +..+..+|.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~--~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--DEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh--hHHHhhHHHH
Confidence 45677899999999986 67888888999999888754 44588999999999999999 9999999999
Q ss_pred HHhcCC-----------cHHHHHHHHHHHHC
Q 046631 729 YAEEGN-----------WENVDKVRKEMRER 748 (813)
Q Consensus 729 ~~~~g~-----------~~~A~~~~~~m~~~ 748 (813)
|...|+ +++|.+.|++..+.
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 988764 57888888888753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00033 Score=57.31 Aligned_cols=94 Identities=9% Similarity=0.006 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-----hhHHHHH
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-----TEHYCCV 656 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l 656 (813)
+..+...|...|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|+..++++++...-.+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4445566666677777777777666632 223445666666666777777777766666532100111 2345555
Q ss_pred HHHHhccCCHHHHHHHHHHh
Q 046631 657 ADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~ 676 (813)
+..+...+++++|++.+++.
T Consensus 86 g~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 55555566666666665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00018 Score=55.15 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhC--------cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELG--------EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
...+-.++..+.+.|++++|+..+++.. ..++...++..|+.++.+.|++++|+..++++++++|++ +.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~--~~a 82 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH--QRA 82 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC--HHH
Confidence 3444567788888888888888877651 122445689999999999999999999999999999998 776
Q ss_pred HHHHH
Q 046631 722 HVLLS 726 (813)
Q Consensus 722 ~~~l~ 726 (813)
+..++
T Consensus 83 ~~Nl~ 87 (95)
T d1tjca_ 83 NGNLK 87 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=3e-05 Score=81.14 Aligned_cols=172 Identities=9% Similarity=0.005 Sum_probs=94.3
Q ss_pred cCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046631 561 SGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 561 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 637 (813)
.+.++.|+..+....+ ++...+..+...+.+.|+.++|...+++.... .| ..++..+...+...|++++|...|
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 3445566665554432 35667788888888999999999888877652 22 346777888899999999999999
Q ss_pred HHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 638 DLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 638 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
++..+ +.|+ ...|+.|+.++...|+..+|+..|.+. ...++.+.++..|...+.+..+..++ ......
T Consensus 176 ~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~-------~~~~~~ 245 (497)
T d1ya0a1 176 RHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE-------VKTKWG 245 (497)
T ss_dssp HHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCC-------CCSSCC
T ss_pred HHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhh-------hccccc
Confidence 99984 4786 789999999999999999999888876 44455555888888777654322110 000011
Q ss_pred C-CCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 716 N-SMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 716 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
. .....++.+..++.....+++..++.+++
T Consensus 246 ~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 246 VSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 0 01223444555566677777666655444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.52 E-value=0.00034 Score=60.95 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=82.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCC
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGH 698 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 698 (813)
.........|++++|.+.|.+...- .+....- + + ..+.+- ......+ .+.....+..+...+...|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~----~-~-~~~~w~--~~~r~~l--~~~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE---WRGPVLD----D-L-RDFQFV--EPFATAL--VEDKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT---CCSSTTG----G-G-TTSTTH--HHHHHHH--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---Ccccccc----c-C-cchHHH--HHHHHHH--HHHHHHHHHHHHHHHHHCCC
Confidence 3344677889999999999988843 3321100 0 0 011111 1111111 12233488899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+++|+..++++++.+|.+ ...|..++.+|...|++++|.+.|+++.+
T Consensus 83 ~~~Al~~~~~al~~~P~~--e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYR--EPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999854
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.41 E-value=0.0003 Score=60.05 Aligned_cols=92 Identities=14% Similarity=-0.126 Sum_probs=62.2
Q ss_pred HHHHhccCCHHHHHHHHHHh----CcCCC---------hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC------
Q 046631 657 ADMLGRVGKVVEAYEFVKEL----GEEGN---------VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS------ 717 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~----~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------ 717 (813)
+..+.+.|++++|++.|++. +..|+ ....|+.+..++...|++++|...+++++.+.|...
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33444556666666665554 11111 123677888888888888888888888776533210
Q ss_pred ---CchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 718 ---MPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 718 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
....+..++.+|...|++++|.+.|++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0224677899999999999999999998864
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.33 E-value=0.00013 Score=68.24 Aligned_cols=120 Identities=12% Similarity=0.022 Sum_probs=66.7
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHH
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a 702 (813)
.+.|++++|+..+++.++. .|+ ...+..++.+|+..|++++|.+.++.. ...|+....+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3456777777777766643 563 666777777777777777777766665 34455544555555554433333332
Q ss_pred HHHHHHHhc-CCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 703 EVVAKKLLE-MDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 703 ~~~~~~~~~-~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
......... .+|.+ ...+...+.++...|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~--~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEE--LTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 222111111 12322 3344455666667777777777777766543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.23 E-value=0.00052 Score=63.99 Aligned_cols=123 Identities=11% Similarity=-0.018 Sum_probs=89.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 668 (813)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 45688999999999998842 334568888888999999999999999988854 676 6666666666665555555
Q ss_pred HHHHHHHh--CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 669 AYEFVKEL--GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 669 A~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+..-.... ...|+....+......+...|+.++|...++++.+..|..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 54433322 2223333344555677888899999999999999999886
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.00075 Score=51.48 Aligned_cols=64 Identities=13% Similarity=-0.043 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC-----CchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS-----MPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
-+..++..+.+.|++++|+..+++++++.|.+. ...++..|+.+|.+.|++++|...++++.+.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 455788999999999999999999998755431 1356888999999999999999999999854
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.11 E-value=0.00082 Score=57.16 Aligned_cols=66 Identities=17% Similarity=-0.036 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhC--------cCCC----hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 651 EHYCCVADMLGRVGKVVEAYEFVKELG--------EEGN----VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 651 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..|+.++.+|.+.|++++|.+.+++.. ..++ ...+++.++.+|...|++++|+..+++++++.|..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 345666666777777776666655531 1111 12256778888899999999999999988876543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.00 E-value=0.0068 Score=52.33 Aligned_cols=113 Identities=11% Similarity=-0.024 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLG 661 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 661 (813)
...........|++++|.+.|++.+.. .+.... ..+ ..+.+ +...-..+... ....+..++..+.
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l-----~~~-~~~~w--~~~~r~~l~~~-----~~~a~~~la~~~~ 78 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE--WRGPVL-----DDL-RDFQF--VEPFATALVED-----KVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT-----GGG-TTSTT--HHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--Cccccc-----ccC-cchHH--HHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 344456788899999999999999984 332210 000 11111 11111112111 2456778899999
Q ss_pred ccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 662 RVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 662 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
+.|++++|+..++++ ..+|.....|..++.++...|+.++|++.|+++
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999998887 667766669999999999999999999998887
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.41 Score=47.90 Aligned_cols=326 Identities=11% Similarity=0.024 Sum_probs=155.0
Q ss_pred HHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--chHHHHHHHHHhcCC
Q 046631 383 ISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE--GMESYLIDMYAKSGL 460 (813)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 460 (813)
+.-..+.|+.+.+.++...+.+. | -..|...-..-...++. ...++...+.+..-.|- .+....+..+.+.++
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~-~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccC
Confidence 33456778888887777776422 2 23343322222221211 11233333333332222 344556677788888
Q ss_pred HHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhccCCChHHHHHHHHH
Q 046631 461 IKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHN-VTPNVVTIASVLPACNPMGNIELGKQLHGF 538 (813)
Q Consensus 461 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 538 (813)
+......+.. .| +...--....+....|+.++|...+..+-..| ..|+. ...++..
T Consensus 88 w~~~~~~~~~----~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~------------------c~~l~~~ 145 (450)
T d1qsaa1 88 WRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA------------------CDKLFSV 145 (450)
T ss_dssp HHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH------------------HHHHHHH
T ss_pred HHHHHHhccC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH------------------HHHHHHH
Confidence 8776655432 33 44444456777888999999988887776554 23332 1223333
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046631 539 SIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFV 618 (813)
Q Consensus 539 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 618 (813)
+.+.|. .+...+-.-+......|+...|..+...+...........+....... .+..... . ..++.....
T Consensus 146 ~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~---~~~~~~~---~--~~~~~~~~~ 216 (450)
T d1qsaa1 146 WRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN---TVLTFAR---T--TGATDFTRQ 216 (450)
T ss_dssp HHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGG---GHHHHHH---H--SCCCHHHHH
T ss_pred HHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChH---hHHHHHh---c--CCCChhhhH
Confidence 333332 233333344555566677777777776665444333444443332211 1111111 1 122222222
Q ss_pred HHHHHHhc--cCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHH
Q 046631 619 AVLSACSY--AGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 619 ~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 694 (813)
.+..+..+ ..+.+.+..++......+...++ ......+...+...+..+.|..++...............++....
T Consensus 217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al 296 (450)
T d1qsaa1 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL 296 (450)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHH
Confidence 22222222 23455566666555544232222 111122223333445555665555554333322222222233333
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 695 LHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
..++...+...++.+-...... +....-++..+...|+.++|..++....
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~--~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 297 GTGDRRGLNTWLARLPMEAKEK--DEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGS--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHhcCcccccH--HHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 4456666666655543222222 4445556666666666666666666554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.09 E-value=0.057 Score=43.57 Aligned_cols=82 Identities=10% Similarity=-0.088 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh----cCCc
Q 046631 664 GKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE----EGNW 735 (813)
Q Consensus 664 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~ 735 (813)
.+.++|++++++....++.. ....|...|.. ..|.++|.+.++++.+.+. +.....|+.+|.. ..+.
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~-a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~----~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGN-GCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND----QDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCH
T ss_pred cCHHHHHHHHhhhhcccchh-hhhhHHHhhhhccccchhhHHHHHHHhhhhccCc----chHHHHHHHHHHcCCccCCCH
Confidence 45566666666655544444 44445544443 2356677777777766542 4455666666665 3466
Q ss_pred HHHHHHHHHHHHCCC
Q 046631 736 ENVDKVRKEMRERGL 750 (813)
Q Consensus 736 ~~A~~~~~~m~~~~~ 750 (813)
++|.+++++..+.|.
T Consensus 112 ~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 112 KQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCC
Confidence 777777777776654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.94 E-value=0.18 Score=38.46 Aligned_cols=141 Identities=9% Similarity=0.089 Sum_probs=90.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHH
Q 046631 589 YGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 668 (813)
+...|..++..+++.+.... .+..-|+-++--....-+-+-..+.++.+-+-|.+.|-. ....++.++.+.+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhcc---
Confidence 34567777778877777652 233334444433334445555566666654444333311 11223333333322
Q ss_pred HHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 669 AYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 669 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..- ..+.-+..+.++|+-+.-.++++.+++.+.-+ |....-++++|.+.|...++.+++.+.=++
T Consensus 85 ------------~se-~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~--~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 85 ------------LNE-HVNKALDILVIQGKRDKLEEIGREILKNNEVS--ASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp ------------CCH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ------------hHH-HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 111 44556777788899999999999988876666 889999999999999999999999999998
Q ss_pred CCc
Q 046631 749 GLR 751 (813)
Q Consensus 749 ~~~ 751 (813)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.37 E-value=0.14 Score=41.19 Aligned_cols=113 Identities=7% Similarity=-0.099 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCCHHH
Q 046631 593 GMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR----VGKVVE 668 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 668 (813)
.++++|+++|++..+.|. +. ....|. .....+.++|.+++++..+. | ++.....|..+|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g~-~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE-MF--GCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC-TT--HHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCC-hh--hhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHH
Confidence 367888888988888762 22 222232 34556788999999888765 3 45666677777754 457899
Q ss_pred HHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCC
Q 046631 669 AYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 669 A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~ 715 (813)
|.+++++....++.. ....|...|.. ..|.++|...++++.+.+..
T Consensus 78 A~~~~~~aa~~g~~~-a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 78 AAQYYSKACGLNDQD-GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHHTTCHH-HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhccCcch-HHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 999999987777666 66777776665 35789999999998887654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.1 Score=40.56 Aligned_cols=69 Identities=16% Similarity=0.069 Sum_probs=52.9
Q ss_pred CChhHHHHHHHHHhccC---CHHHHHHHHHHhC-cCCC-hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 648 PSTEHYCCVADMLGRVG---KVVEAYEFVKELG-EEGN-VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 648 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
|.+.+-...+.++.+.. ++++++.+++++- ..|. ..+.|..|.-+|.+.|++++|...++++++++|++
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 45566666677776654 4567888887763 3343 34688889999999999999999999999999998
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.74 E-value=0.1 Score=40.46 Aligned_cols=64 Identities=6% Similarity=-0.055 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhC---CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 684 EIWGSLLGSCRLHG---HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 684 ~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.+.....|++.++. +.++|+.+++.++..+|.+ ...++..|+-+|.+.|++++|.+.++++.+.
T Consensus 36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~-~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 36677788888764 4578999999999888765 1357788999999999999999999999953
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.77 E-value=1 Score=34.32 Aligned_cols=84 Identities=11% Similarity=-0.041 Sum_probs=51.2
Q ss_pred hcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 046631 560 KSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDL 639 (813)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 639 (813)
+++++......+-.+- .+..-++..+..+..+|+-++-.++++.+.+. -+|++.....+..||.+.|...++.+++.+
T Consensus 68 ~C~Nlk~vv~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ 145 (161)
T d1wy6a1 68 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 145 (161)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3444444444333322 23344455566667777777777777776663 466777777777777777777777777777
Q ss_pred HHHhcCC
Q 046631 640 MQQEYKI 646 (813)
Q Consensus 640 ~~~~~~~ 646 (813)
+-+. |+
T Consensus 146 ACe~-G~ 151 (161)
T d1wy6a1 146 ACKK-GE 151 (161)
T ss_dssp HHHT-TC
T ss_pred HHHH-hH
Confidence 7665 54
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| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.40 E-value=12 Score=36.44 Aligned_cols=343 Identities=10% Similarity=-0.006 Sum_probs=173.6
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLV 253 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 253 (813)
+++......+...+ .+...-.....+....|+..+|...+...-..|.. ....+ ..++....
T Consensus 86 ~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c----------------~~l~~~~~ 147 (450)
T d1qsaa1 86 EDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNAC----------------DKLFSVWR 147 (450)
T ss_dssp TCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHH----------------HHHHHHHH
T ss_pred cCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHH----------------HHHHHHHH
Confidence 77777666664432 23333345667777889998988888777655421 11122 23344444
Q ss_pred HhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhH
Q 046631 254 KLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTF 333 (813)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~ 333 (813)
+.|. .+...+-.-+......|+...|..+...++..........+.... ++..+.... .. ..++....
T Consensus 148 ~~~~---lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~-~~-----~~~~~~~~ 215 (450)
T d1qsaa1 148 ASGK---QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFA-RT-----TGATDFTR 215 (450)
T ss_dssp HTTC---SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHH-HH-----SCCCHHHH
T ss_pred hcCC---CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHH-hc-----CCCChhhh
Confidence 4333 344444455666667788888888888776544444444444332 222222222 11 01111111
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCC-CCCCHh
Q 046631 334 LSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQG-FMIDSV 412 (813)
Q Consensus 334 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~ 412 (813)
..+..++.+. ...+.+.|..++....... ..++..
T Consensus 216 ~~~~~~l~rl--------------------------------------------a~~d~~~a~~~l~~~~~~~~~~~~~~ 251 (450)
T d1qsaa1 216 QMAAVAFASV--------------------------------------------ARQDAENARLMIPSLAQAQQLNEDQI 251 (450)
T ss_dssp HHHHHHHHHH--------------------------------------------HHHCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHH--------------------------------------------hccChhHHHHHHHhhhhcccccHHHH
Confidence 1111111111 1134455555555544332 111111
Q ss_pred H-HHH-HHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChh-hHHHHHHHHH
Q 046631 413 T-VTA-LLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQA-TWNAMIAGYT 489 (813)
Q Consensus 413 t-~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~ 489 (813)
. ... +.......+..+.+..........+... ......+......+++..+...|+.+........ ..--+..++.
T Consensus 252 ~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~ 330 (450)
T d1qsaa1 252 QELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLL 330 (450)
T ss_dssp HHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHhhcccccch-HHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHH
Confidence 1 111 1111223344455555554443333222 2333344556667888888888888764322222 2234567778
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC-hHHHHHHHHHHHHcCCC--Cch----hHHHHHHHHHHhcC
Q 046631 490 QNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN-IELGKQLHGFSIRYLLD--QNV----FVGTSLIDMYSKSG 562 (813)
Q Consensus 490 ~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~--~~~----~~~~~li~~~~~~g 562 (813)
..|+.++|...|..... .++ |-..+.+- +.|. +.. ...... +.. ..-...+..+...|
T Consensus 331 ~~G~~~~A~~~~~~~a~---~~~---fYG~LAa~-~Lg~~~~~--------~~~~~~~~~~~~~~~~~~~~ra~~L~~~g 395 (450)
T d1qsaa1 331 ERGREAEAKEILHQLMQ---QRG---FYPMVAAQ-RIGEEYEL--------KIDKAPQNVDSALTQGPEMARVRELMYWN 395 (450)
T ss_dssp HTTCHHHHHHHHHHHHT---SCS---HHHHHHHH-HTTCCCCC--------CCCCCCSCCCCHHHHSHHHHHHHHHHHTT
T ss_pred HcCChhhHHHHHHHHhc---CCC---hHHHHHHH-HcCCCCCC--------CcCCCCccHHHhhhcChHHHHHHHHHHcC
Confidence 88888888888888764 233 32222221 0110 000 000000 000 00112345567889
Q ss_pred CHHHHHHHHhhCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046631 563 VINYAANVFAKIP-EKNSVTYTTMILGYGQHGMSERALSLFRSMK 606 (813)
Q Consensus 563 ~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (813)
....|...+..+. ..+......+.....+.|.++.|+....+..
T Consensus 396 ~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 396 LDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 9999988877554 4466677777888888999999988776653
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