Citrus Sinensis ID: 046638

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV
ccEEcccccccHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHccccHHHHHHHHcccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHcHHccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccc
ccHHHHHccccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccc
lqiltysrcdssldfqnvyssvrtrNQISWNAIIAGFCNLGSGEQALKCFSEMRQagididyfTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAnkvfssmderdlVSWNSLLLGCAHHGYSREAVQLFEQMQkteikpdgtTFLVVLSACCHAGFIDKGLQYFYLMRndasleppraeHYTAIVGLLGRAGFLNEAESFInsmsrnpgpsVYKALLSACQVHGNREIAVRSAKRVldlwpndpaIYVLLSNvskatdcwddagdIRTLMYnrgirkkpgyswv
lqiltysrcdssldfQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSnvskatdcwDDAGDIRTLMynrgirkkpgyswv
LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV
***LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS******PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR********
LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV
LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV
LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query306 2.2.26 [Sep-21-2011]
Q3E6Q1 809 Pentatricopeptide repeat- yes no 0.990 0.374 0.417 3e-67
Q9SY02 781 Pentatricopeptide repeat- no no 0.990 0.387 0.371 2e-65
Q9SVP7 1064 Pentatricopeptide repeat- no no 0.990 0.284 0.407 3e-65
Q9LIQ7 633 Pentatricopeptide repeat- no no 0.977 0.472 0.408 4e-65
Q9SMZ2 990 Pentatricopeptide repeat- no no 0.980 0.303 0.375 2e-61
Q9FRI5 790 Pentatricopeptide repeat- no no 0.941 0.364 0.380 7e-61
Q9SIT7697 Pentatricopeptide repeat- no no 0.941 0.413 0.379 4e-59
Q9SI53 630 Pentatricopeptide repeat- no no 0.983 0.477 0.381 2e-58
Q9LU94701 Putative pentatricopeptid no no 0.954 0.416 0.374 2e-58
Q9MA85658 Pentatricopeptide repeat- no no 0.980 0.455 0.358 2e-58
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 Back     alignment and function desciption
 Score =  255 bits (652), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C       +++  +++R  +SWNA+I GF   G    AL  FS+MR   +  D 
Sbjct: 379 ISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDT 438

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ AI  +S     K +H ++ +   D NVFV   LV MYA CGAI  A  +F  
Sbjct: 439 FTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDM 498

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER + +WN+++ G   HG+ + A++LFE+MQK  IKP+G TFL V+SAC H+G ++ G
Sbjct: 499 MSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG 558

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+ FY+M+ + S+E    +HY A+V LLGRAG LNEA  FI  M   P  +VY A+L AC
Sbjct: 559 LKCFYMMKENYSIELS-MDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC 617

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           Q+H N   A ++A+R+ +L P+D   +VLL+N+ +A   W+  G +R  M  +G+RK PG
Sbjct: 618 QIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPG 677

Query: 303 YSWV 306
            S V
Sbjct: 678 CSMV 681

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 Back     alignment and function description
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 Back     alignment and function description
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 Back     alignment and function description
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 Back     alignment and function description
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 Back     alignment and function description
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1 Back     alignment and function description
>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2 Back     alignment and function description
>sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
359478617 628 PREDICTED: pentatricopeptide repeat-cont 0.993 0.484 0.643 1e-113
297746034 458 unnamed protein product [Vitis vinifera] 0.993 0.663 0.643 1e-112
255559012 606 pentatricopeptide repeat-containing prot 0.993 0.501 0.616 1e-112
224106429 617 predicted protein [Populus trichocarpa] 0.993 0.492 0.626 1e-109
449450916 616 PREDICTED: pentatricopeptide repeat-cont 0.993 0.493 0.573 1e-102
449496714 616 PREDICTED: LOW QUALITY PROTEIN: pentatri 0.993 0.493 0.573 1e-102
57899214 566 pentatricopeptide (PPR) repeat-containin 0.954 0.515 0.506 3e-85
218189824 566 hypothetical protein OsI_05387 [Oryza sa 0.954 0.515 0.506 3e-85
218199277 749 hypothetical protein OsI_25308 [Oryza sa 0.908 0.371 0.510 8e-82
297725471 721 Os07g0203900 [Oryza sativa Japonica Grou 0.908 0.385 0.506 3e-81
>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/306 (64%), Positives = 236/306 (77%), Gaps = 2/306 (0%)

Query: 3   ILTYSRCDSSL--DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           +  YS C SS   DF  V S V   +QISWNA+I G  NLG+GE ALKCFS+MRQAGID+
Sbjct: 323 VTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDM 382

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D FT TS++ AIG+IS   EGKQ+HAL+ K GY SN+ VQN LV MYA CG+INDA +VF
Sbjct: 383 DLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVF 442

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           S MD  D++SWNSLL GCA+HGY REAV+LFEQM+++ +KPD TTFLVVLSAC H G +D
Sbjct: 443 SLMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLD 502

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           KGL+YF LMRND SLE P  EHY+++V L  RAG+L+EAE FIN+M   PGPSVYKALLS
Sbjct: 503 KGLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLS 562

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           ACQVHGN EIAVR AK++L + PNDP IYVLLSNV      WD+   IR +M +RG+RK+
Sbjct: 563 ACQVHGNVEIAVRCAKKLLQMCPNDPVIYVLLSNVQATVGYWDNVASIRKVMCDRGVRKE 622

Query: 301 PGYSWV 306
           PGYSW+
Sbjct: 623 PGYSWI 628

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297746034|emb|CBI16090.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa] gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450916|ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449496714|ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|57899214|dbj|BAD87363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Japonica Group] gi|222619954|gb|EEE56086.1| hypothetical protein OsJ_04925 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218189824|gb|EEC72251.1| hypothetical protein OsI_05387 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|218199277|gb|EEC81704.1| hypothetical protein OsI_25308 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|297725471|ref|NP_001175099.1| Os07g0203900 [Oryza sativa Japonica Group] gi|255677594|dbj|BAH93827.1| Os07g0203900 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
TAIR|locus:2202074 809 CRR22 "CHLORORESPIRATORY REDUC 0.990 0.374 0.417 3.8e-62
TAIR|locus:2140235 781 AT4G02750 [Arabidopsis thalian 0.990 0.387 0.371 4.3e-61
TAIR|locus:2119440 1064 AT4G13650 [Arabidopsis thalian 0.986 0.283 0.413 1.3e-60
TAIR|locus:2032955 790 AT1G25360 "AT1G25360" [Arabido 0.941 0.364 0.380 2.6e-59
TAIR|locus:2125899 990 AT4G33170 [Arabidopsis thalian 0.980 0.303 0.375 4.4e-56
TAIR|locus:2056794 630 REME1 "required for efficiency 0.947 0.460 0.392 2.3e-55
TAIR|locus:2054131697 SLO2 "AT2G13600" [Arabidopsis 0.980 0.430 0.371 2.9e-55
TAIR|locus:2032840 937 AT1G16480 "AT1G16480" [Arabido 0.990 0.323 0.365 4.1e-55
TAIR|locus:2164880 710 EMB2744 "EMBRYO DEFECTIVE 2744 0.980 0.422 0.372 4.8e-55
TAIR|locus:2038603 868 AT2G27610 "AT2G27610" [Arabido 0.941 0.331 0.368 1.8e-54
TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 127/304 (41%), Positives = 185/304 (60%)

Query:     3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
             I  Y +C       +++  +++R  +SWNA+I GF   G    AL  FS+MR   +  D 
Sbjct:   379 ISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDT 438

Query:    63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             FT  S++ AI  +S     K +H ++ +   D NVFV   LV MYA CGAI  A  +F  
Sbjct:   439 FTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDM 498

Query:   123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             M ER + +WN+++ G   HG+ + A++LFE+MQK  IKP+G TFL V+SAC H+G ++ G
Sbjct:   499 MSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG 558

Query:   183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             L+ FY+M+ + S+E    +HY A+V LLGRAG LNEA  FI  M   P  +VY A+L AC
Sbjct:   559 LKCFYMMKENYSIELSM-DHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC 617

Query:   243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
             Q+H N   A ++A+R+ +L P+D   +VLL+N+ +A   W+  G +R  M  +G+RK PG
Sbjct:   618 QIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPG 677

Query:   303 YSWV 306
              S V
Sbjct:   678 CSMV 681
GO:0005739 "mitochondrion" evidence=ISM
GO:0004519 "endonuclease activity" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0016556 "mRNA modification" evidence=RCA;IMP
TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164880 EMB2744 "EMBRYO DEFECTIVE 2744" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_IX001221
hypothetical protein (617 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
PLN03081 697 PLN03081, PLN03081, pentatricopeptide (PPR) repeat 1e-62
PLN03077 857 PLN03077, PLN03077, Protein ECB2; Provisional 1e-61
PLN03077 857 PLN03077, PLN03077, Protein ECB2; Provisional 7e-38
PLN03081 697 PLN03081, PLN03081, pentatricopeptide (PPR) repeat 9e-32
PLN03077 857 PLN03077, PLN03077, Protein ECB2; Provisional 1e-26
PLN03077 857 PLN03077, PLN03077, Protein ECB2; Provisional 7e-26
PLN03077 857 PLN03077, PLN03077, Protein ECB2; Provisional 8e-14
PLN03081 697 PLN03081, PLN03081, pentatricopeptide (PPR) repeat 2e-11
pfam1304150 pfam13041, PPR_2, PPR repeat family 6e-11
pfam1304150 pfam13041, PPR_2, PPR repeat family 2e-07
PLN03218 1060 PLN03218, PLN03218, maturation of RBCL 1; Provisio 7e-06
PLN03218 1060 PLN03218, PLN03218, maturation of RBCL 1; Provisio 7e-06
pfam0153531 pfam01535, PPR, PPR repeat 2e-05
TIGR0075635 TIGR00756, PPR, pentatricopeptide repeat domain (P 3e-05
TIGR0075635 TIGR00756, PPR, pentatricopeptide repeat domain (P 5e-05
pfam0153531 pfam01535, PPR, PPR repeat 1e-04
pfam1381234 pfam13812, PPR_3, Pentatricopeptide repeat domain 2e-04
PLN03218 1060 PLN03218, PLN03218, maturation of RBCL 1; Provisio 0.002
pfam1381234 pfam13812, PPR_3, Pentatricopeptide repeat domain 0.003
>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information 
 Score =  210 bits (535), Expect = 1e-62
 Identities = 94/301 (31%), Positives = 170/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D + V+  +  +  ++WN+++AG+   G  E+AL  + EMR +G+ ID FT 
Sbjct: 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++     ++  +  KQ HA + + G+  ++     LV +Y+  G + DA  VF  M  
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++L+SWN+L+ G  +HG   +AV++FE+M    + P+  TFL VLSAC ++G  ++G + 
Sbjct: 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  +  ++ PRA HY  ++ LLGR G L+EA + I      P  +++ ALL+AC++H
Sbjct: 449 FQSMSENHRIK-PRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+++  + P     YV+L N+  ++    +A  +   +  +G+   P  +W
Sbjct: 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567

Query: 306 V 306
           +
Sbjct: 568 I 568

Length = 697
>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional Back     alignment and domain information
>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional Back     alignment and domain information
>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional Back     alignment and domain information
>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional Back     alignment and domain information
>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional Back     alignment and domain information
>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family Back     alignment and domain information
>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family Back     alignment and domain information
>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional Back     alignment and domain information
>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional Back     alignment and domain information
>gnl|CDD|144943 pfam01535, PPR, PPR repeat Back     alignment and domain information
>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>gnl|CDD|144943 pfam01535, PPR, PPR repeat Back     alignment and domain information
>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain Back     alignment and domain information
>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional Back     alignment and domain information
>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 306
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 100.0
PLN03077 857 Protein ECB2; Provisional 100.0
PLN03218 1060 maturation of RBCL 1; Provisional 100.0
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 100.0
PLN03218 1060 maturation of RBCL 1; Provisional 100.0
PLN03077 857 Protein ECB2; Provisional 100.0
PRK11788389 tetratricopeptide repeat protein; Provisional 99.96
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.94
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.94
PRK11788389 tetratricopeptide repeat protein; Provisional 99.92
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.92
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.91
TIGR00990 615 3a0801s09 mitochondrial precursor proteins import 99.89
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.89
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.89
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.88
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.86
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.86
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.86
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.83
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.81
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.8
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.8
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.79
KOG1126638 consensus DNA-binding cell division cycle control 99.79
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.78
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.75
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.75
KOG2076 895 consensus RNA polymerase III transcription factor 99.75
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.74
PRK14574 822 hmsH outer membrane protein; Provisional 99.73
PRK14574 822 hmsH outer membrane protein; Provisional 99.71
KOG1126638 consensus DNA-binding cell division cycle control 99.7
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.69
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.69
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.68
KOG2003 840 consensus TPR repeat-containing protein [General f 99.67
KOG4422 625 consensus Uncharacterized conserved protein [Funct 99.67
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.67
KOG0547606 consensus Translocase of outer mitochondrial membr 99.66
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.65
PRK12370553 invasion protein regulator; Provisional 99.64
KOG1129478 consensus TPR repeat-containing protein [General f 99.63
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.62
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.62
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.62
PRK12370553 invasion protein regulator; Provisional 99.62
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.61
KOG1129478 consensus TPR repeat-containing protein [General f 99.59
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.58
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.58
PRK11189296 lipoprotein NlpI; Provisional 99.57
KOG2003 840 consensus TPR repeat-containing protein [General f 99.56
KOG0495913 consensus HAT repeat protein [RNA processing and m 99.55
KOG0495 913 consensus HAT repeat protein [RNA processing and m 99.54
KOG4422625 consensus Uncharacterized conserved protein [Funct 99.53
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.52
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.52
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.51
KOG0547 606 consensus Translocase of outer mitochondrial membr 99.51
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.5
PRK11189296 lipoprotein NlpI; Provisional 99.5
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.5
PF1304150 PPR_2: PPR repeat family 99.5
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.5
PF1304150 PPR_2: PPR repeat family 99.5
KOG1915 677 consensus Cell cycle control protein (crooked neck 99.47
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.43
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 99.42
KOG2076 895 consensus RNA polymerase III transcription factor 99.42
KOG4318 1088 consensus Bicoid mRNA stability factor [RNA proces 99.42
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.4
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 99.37
KOG4340 459 consensus Uncharacterized conserved protein [Funct 99.36
KOG1125579 consensus TPR repeat-containing protein [General f 99.34
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.33
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.31
KOG1915 677 consensus Cell cycle control protein (crooked neck 99.31
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.27
KOG0624 504 consensus dsRNA-activated protein kinase inhibitor 99.26
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.24
PLN02789320 farnesyltranstransferase 99.23
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.18
KOG4318 1088 consensus Bicoid mRNA stability factor [RNA proces 99.18
KOG1125579 consensus TPR repeat-containing protein [General f 99.17
PRK10370198 formate-dependent nitrite reductase complex subuni 99.17
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.17
KOG2047 835 consensus mRNA splicing factor [RNA processing and 99.15
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.14
PLN02789320 farnesyltranstransferase 99.14
PRK15359144 type III secretion system chaperone protein SscB; 99.12
KOG0548 539 consensus Molecular co-chaperone STI1 [Posttransla 99.11
PRK04841 903 transcriptional regulator MalT; Provisional 99.1
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.1
PRK10370198 formate-dependent nitrite reductase complex subuni 99.09
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.08
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.04
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 99.02
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.01
KOG1128 777 consensus Uncharacterized conserved protein, conta 99.0
PRK14720 906 transcript cleavage factor/unknown domain fusion p 98.99
KOG1128 777 consensus Uncharacterized conserved protein, conta 98.98
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 98.98
PF1285434 PPR_1: PPR repeat 98.96
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 98.95
KOG2047 835 consensus mRNA splicing factor [RNA processing and 98.95
PRK04841 903 transcriptional regulator MalT; Provisional 98.95
KOG4162799 consensus Predicted calmodulin-binding protein [Si 98.94
PRK15359144 type III secretion system chaperone protein SscB; 98.94
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 98.93
KOG2376 652 consensus Signal recognition particle, subunit Srp 98.91
KOG3785557 consensus Uncharacterized conserved protein [Funct 98.9
KOG4340 459 consensus Uncharacterized conserved protein [Funct 98.9
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 98.89
KOG3060289 consensus Uncharacterized conserved protein [Funct 98.88
TIGR02552135 LcrH_SycD type III secretion low calcium response 98.87
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.87
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 98.85
PRK14720 906 transcript cleavage factor/unknown domain fusion p 98.85
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.83
PF1285434 PPR_1: PPR repeat 98.83
TIGR02552135 LcrH_SycD type III secretion low calcium response 98.82
KOG2376652 consensus Signal recognition particle, subunit Srp 98.79
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 98.79
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.77
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.77
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.75
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.73
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.73
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.73
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.72
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 98.69
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.69
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.65
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.63
KOG3060289 consensus Uncharacterized conserved protein [Funct 98.62
KOG3785 557 consensus Uncharacterized conserved protein [Funct 98.55
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.54
TIGR0075635 PPR pentatricopeptide repeat domain (PPR motif). T 98.54
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 98.53
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.52
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.52
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.5
TIGR0075635 PPR pentatricopeptide repeat domain (PPR motif). T 98.49
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 98.49
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 98.49
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 98.47
PF1381234 PPR_3: Pentatricopeptide repeat domain 98.47
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 98.46
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 98.44
PF1381234 PPR_3: Pentatricopeptide repeat domain 98.44
KOG0553304 consensus TPR repeat-containing protein [General f 98.44
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 98.43
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 98.43
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.43
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 98.41
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.38
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 98.37
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 98.37
KOG0550 486 consensus Molecular chaperone (DnaJ superfamily) [ 98.36
PRK02603172 photosystem I assembly protein Ycf3; Provisional 98.35
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.34
PRK02603172 photosystem I assembly protein Ycf3; Provisional 98.34
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.31
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 98.3
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.3
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.28
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 98.27
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.27
KOG0553304 consensus TPR repeat-containing protein [General f 98.26
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.24
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.24
PF05843 280 Suf: Suppressor of forked protein (Suf); InterPro: 98.23
CHL00033168 ycf3 photosystem I assembly protein Ycf3 98.22
PF08579120 RPM2: Mitochondrial ribonuclease P subunit (RPM2); 98.22
PF12688120 TPR_5: Tetratrico peptide repeat 98.21
CHL00033168 ycf3 photosystem I assembly protein Ycf3 98.2
PF0153531 PPR: PPR repeat; InterPro: IPR002885 This entry re 98.18
PF0153531 PPR: PPR repeat; InterPro: IPR002885 This entry re 98.18
COG4700251 Uncharacterized protein conserved in bacteria cont 98.17
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 98.15
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 98.14
PF1337173 TPR_9: Tetratricopeptide repeat 98.12
PF06239228 ECSIT: Evolutionarily conserved signalling interme 98.11
PRK10803263 tol-pal system protein YbgF; Provisional 98.1
PRK15331165 chaperone protein SicA; Provisional 98.06
PF12688120 TPR_5: Tetratrico peptide repeat 98.06
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.06
COG4700251 Uncharacterized protein conserved in bacteria cont 98.06
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.04
PRK10803263 tol-pal system protein YbgF; Provisional 98.04
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.02
PF10037 429 MRP-S27: Mitochondrial 28S ribosomal protein S27; 98.01
PF10037429 MRP-S27: Mitochondrial 28S ribosomal protein S27; 97.98
COG3898 531 Uncharacterized membrane-bound protein [Function u 97.96
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 97.96
KOG2796366 consensus Uncharacterized conserved protein [Funct 97.88
PF03704146 BTAD: Bacterial transcriptional activator domain; 97.88
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 97.86
COG3898 531 Uncharacterized membrane-bound protein [Function u 97.86
COG4235287 Cytochrome c biogenesis factor [Posttranslational 97.83
PF04840319 Vps16_C: Vps16, C-terminal region; InterPro: IPR00 97.83
PF04840319 Vps16_C: Vps16, C-terminal region; InterPro: IPR00 97.8
PF1337173 TPR_9: Tetratricopeptide repeat 97.8
PF1342844 TPR_14: Tetratricopeptide repeat 97.79
PF08579120 RPM2: Mitochondrial ribonuclease P subunit (RPM2); 97.77
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.76
KOG2796366 consensus Uncharacterized conserved protein [Funct 97.75
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 97.7
PF1343134 TPR_17: Tetratricopeptide repeat 97.7
PF13281374 DUF4071: Domain of unknown function (DUF4071) 97.68
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 97.67
PRK15331165 chaperone protein SicA; Provisional 97.59
COG1729262 Uncharacterized protein conserved in bacteria [Fun 97.58
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 97.53
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 97.48
COG1729262 Uncharacterized protein conserved in bacteria [Fun 97.47
PF13512142 TPR_18: Tetratricopeptide repeat 97.45
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 97.43
PF13512142 TPR_18: Tetratricopeptide repeat 97.42
PF06239228 ECSIT: Evolutionarily conserved signalling interme 97.41
KOG1585308 consensus Protein required for fusion of vesicles 97.39
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 97.35
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 97.35
PRK11906458 transcriptional regulator; Provisional 97.3
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.3
KOG3941406 consensus Intermediate in Toll signal transduction 97.27
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.24
KOG2041 1189 consensus WD40 repeat protein [General function pr 97.22
PF03704146 BTAD: Bacterial transcriptional activator domain; 97.16
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 97.06
smart00299140 CLH Clathrin heavy chain repeat homology. 97.06
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.05
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 97.02
PF12921126 ATP13: Mitochondrial ATPase expression; InterPro: 97.02
COG0457291 NrfG FOG: TPR repeat [General function prediction 97.01
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.0
PF13281374 DUF4071: Domain of unknown function (DUF4071) 96.96
KOG1941 518 consensus Acetylcholine receptor-associated protei 96.95
COG0457291 NrfG FOG: TPR repeat [General function prediction 96.95
PRK11906458 transcriptional regulator; Provisional 96.94
KOG4555175 consensus TPR repeat-containing protein [Function 96.92
PF07079 549 DUF1347: Protein of unknown function (DUF1347); In 96.84
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 96.79
PRK11619 644 lytic murein transglycosylase; Provisional 96.79
COG4105254 ComL DNA uptake lipoprotein [General function pred 96.78
KOG1941 518 consensus Acetylcholine receptor-associated protei 96.77
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 96.77
COG3118304 Thioredoxin domain-containing protein [Posttransla 96.76
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 96.76
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 96.61
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 96.61
KOG2610 491 consensus Uncharacterized conserved protein [Funct 96.59
KOG4555175 consensus TPR repeat-containing protein [Function 96.59
COG4649221 Uncharacterized protein conserved in bacteria [Fun 96.57
PF04184 539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 96.53
PF12921126 ATP13: Mitochondrial ATPase expression; InterPro: 96.51
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 96.43
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 96.34
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 96.33
KOG2610 491 consensus Uncharacterized conserved protein [Funct 96.22
PF04184 539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 96.2
COG4105254 ComL DNA uptake lipoprotein [General function pred 96.18
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 96.17
COG3629280 DnrI DNA-binding transcriptional activator of the 96.15
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 96.11
KOG4234271 consensus TPR repeat-containing protein [General f 96.05
COG2976207 Uncharacterized protein conserved in bacteria [Fun 96.04
COG4649221 Uncharacterized protein conserved in bacteria [Fun 96.04
COG2976207 Uncharacterized protein conserved in bacteria [Fun 96.0
PF1342844 TPR_14: Tetratricopeptide repeat 95.99
smart00299140 CLH Clathrin heavy chain repeat homology. 95.96
PF09205161 DUF1955: Domain of unknown function (DUF1955); Int 95.95
PF13170297 DUF4003: Protein of unknown function (DUF4003) 95.94
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 95.9
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 95.83
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 95.82
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 95.75
PF1343134 TPR_17: Tetratricopeptide repeat 95.7
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 95.69
KOG1585308 consensus Protein required for fusion of vesicles 95.6
PF09205161 DUF1955: Domain of unknown function (DUF1955); Int 95.58
KOG1586288 consensus Protein required for fusion of vesicles 95.51
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 95.51
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 95.49
KOG20411189 consensus WD40 repeat protein [General function pr 95.48
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 95.46
KOG3941 406 consensus Intermediate in Toll signal transduction 95.42
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 95.42
PF07035167 Mic1: Colon cancer-associated protein Mic1-like; I 95.23
PF02259 352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 95.21
KOG1258577 consensus mRNA processing protein [RNA processing 95.2
KOG1258 577 consensus mRNA processing protein [RNA processing 95.17
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 95.08
COG3629280 DnrI DNA-binding transcriptional activator of the 95.07
COG1747 711 Uncharacterized N-terminal domain of the transcrip 95.01
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 94.81
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 94.75
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 94.69
KOG1550552 consensus Extracellular protein SEL-1 and related 94.65
KOG4648 536 consensus Uncharacterized conserved protein, conta 94.64
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 94.57
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 94.46
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 94.42
PRK09687280 putative lyase; Provisional 94.34
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 94.28
PRK09687280 putative lyase; Provisional 94.26
KOG4648 536 consensus Uncharacterized conserved protein, conta 94.25
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 94.12
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 94.08
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 94.06
PF10345 608 Cohesin_load: Cohesin loading factor; InterPro: IP 94.04
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 93.97
PF06552186 TOM20_plant: Plant specific mitochondrial import r 93.81
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 93.79
cd00923103 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. 93.75
PF02284108 COX5A: Cytochrome c oxidase subunit Va; InterPro: 93.66
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 93.56
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 93.48
KOG1464 440 consensus COP9 signalosome, subunit CSN2 [Posttran 93.43
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 93.32
KOG4642 284 consensus Chaperone-dependent E3 ubiquitin protein 93.27
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 93.17
cd00923103 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. 93.15
COG1747 711 Uncharacterized N-terminal domain of the transcrip 93.06
KOG4234271 consensus TPR repeat-containing protein [General f 92.99
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 92.96
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 92.94
PF13170297 DUF4003: Protein of unknown function (DUF4003) 92.93
KOG4570 418 consensus Uncharacterized conserved protein [Funct 92.88
COG3947361 Response regulator containing CheY-like receiver a 92.85
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 92.53
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 92.52
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 92.49
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 92.47
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 92.43
PRK12798421 chemotaxis protein; Reviewed 92.35
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 92.16
PF04097 613 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 92.13
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 92.12
PF04097613 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 91.99
PRK10941269 hypothetical protein; Provisional 91.87
KOG1308 377 consensus Hsp70-interacting protein Hip/Transient 91.77
COG4455273 ImpE Protein of avirulence locus involved in tempe 91.75
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 91.74
TIGR02508115 type_III_yscG type III secretion protein, YscG fam 91.65
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 91.64
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 91.38
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 91.36
PF02284108 COX5A: Cytochrome c oxidase subunit Va; InterPro: 91.31
KOG4507 886 consensus Uncharacterized conserved protein, conta 91.2
PF07163309 Pex26: Pex26 protein; InterPro: IPR010797 This fam 91.0
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 90.68
PF07035167 Mic1: Colon cancer-associated protein Mic1-like; I 90.45
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 90.37
PF08424 321 NRDE-2: NRDE-2, necessary for RNA interference; In 90.22
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 90.21
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 90.04
KOG1586288 consensus Protein required for fusion of vesicles 89.99
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 89.91
PF06552186 TOM20_plant: Plant specific mitochondrial import r 89.86
COG4455 273 ImpE Protein of avirulence locus involved in tempe 89.52
KOG1550 552 consensus Extracellular protein SEL-1 and related 89.3
PF13929292 mRNA_stabil: mRNA stabilisation 89.01
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 88.7
KOG4570418 consensus Uncharacterized conserved protein [Funct 88.23
PRK10941269 hypothetical protein; Provisional 87.64
PF07163309 Pex26: Pex26 protein; InterPro: IPR010797 This fam 87.61
KOG4507886 consensus Uncharacterized conserved protein, conta 87.15
KOG2063877 consensus Vacuolar assembly/sorting proteins VPS39 86.97
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 86.95
PF10345 608 Cohesin_load: Cohesin loading factor; InterPro: IP 86.75
PF10366108 Vps39_1: Vacuolar sorting protein 39 domain 1; Int 86.29
TIGR02508115 type_III_yscG type III secretion protein, YscG fam 85.97
KOG0551 390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 85.94
KOG2300 629 consensus Uncharacterized conserved protein [Funct 85.89
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 85.52
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 85.51
KOG4077149 consensus Cytochrome c oxidase, subunit Va/COX6 [E 85.45
KOG3364149 consensus Membrane protein involved in organellar 84.89
PF04090199 RNA_pol_I_TF: RNA polymerase I specific initiation 84.46
COG5108 1117 RPO41 Mitochondrial DNA-directed RNA polymerase [T 84.43
PF1468962 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do 84.2
PF09670379 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 83.98
KOG2063877 consensus Vacuolar assembly/sorting proteins VPS39 83.37
PF10255 404 Paf67: RNA polymerase I-associated factor PAF67; I 83.18
KOG4077149 consensus Cytochrome c oxidase, subunit Va/COX6 [E 82.69
COG5159 421 RPN6 26S proteasome regulatory complex component [ 81.97
PF09986214 DUF2225: Uncharacterized protein conserved in bact 81.95
cd00280200 TRFH Telomeric Repeat binding Factor or TTAGGG Rep 81.45
COG3947361 Response regulator containing CheY-like receiver a 81.0
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 80.69
KOG3824 472 consensus Huntingtin interacting protein HYPE [Gen 80.35
PF04910 360 Tcf25: Transcriptional repressor TCF25; InterPro: 80.31
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-56  Score=394.83  Aligned_cols=305  Identities=31%  Similarity=0.618  Sum_probs=297.9

Q ss_pred             CchhhhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhh
Q 046638            1 LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE   80 (306)
Q Consensus         1 ali~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (306)
                      +||++|+++|++++|.++|+.|+++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++
T Consensus       264 ~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~  343 (697)
T PLN03081        264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH  343 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046638           81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK  160 (306)
Q Consensus        81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~  160 (306)
                      |.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|.+||..+||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus       344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~  423 (697)
T PLN03081        344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA  423 (697)
T ss_pred             HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHH
Q 046638          161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS  240 (306)
Q Consensus       161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~  240 (306)
                      ||..||+.++.+|++.|..++|.++|+.|.+..+..| +..+|+.++++|++.|++++|.+++++|...|+..+|+.++.
T Consensus       424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~  502 (697)
T PLN03081        424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLT  502 (697)
T ss_pred             CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999988666654 999999999999999999999999999998899999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCCCcCC
Q 046638          241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV  306 (306)
Q Consensus       241 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  306 (306)
                      +|...|+++.|..+++++.+..|++..+|..|+.+|.+.|++++|.+++++|.+.|+.+.|+.|||
T Consensus       503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i  568 (697)
T PLN03081        503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI  568 (697)
T ss_pred             HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence            999999999999999999999999889999999999999999999999999999999999999996

>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG4422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF13041 PPR_2: PPR repeat family Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF13041 PPR_2: PPR repeat family Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12854 PPR_1: PPR repeat Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF12854 PPR_1: PPR repeat Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>PF13812 PPR_3: Pentatricopeptide repeat domain Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>PF13812 PPR_3: Pentatricopeptide repeat domain Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat Back     alignment and domain information
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>PRK11619 lytic murein transglycosylase; Provisional Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus Back     alignment and domain information
>PF13170 DUF4003: Protein of unknown function (DUF4003) Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va Back     alignment and domain information
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>PF13170 DUF4003: Protein of unknown function (DUF4003) Back     alignment and domain information
>KOG4570 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PRK12798 chemotaxis protein; Reviewed Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex Back     alignment and domain information
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>TIGR02508 type_III_yscG type III secretion protein, YscG family Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13929 mRNA_stabil: mRNA stabilisation Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>KOG4570 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>TIGR02508 type_III_yscG type III secretion protein, YscG family Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I Back     alignment and domain information
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription] Back     alignment and domain information
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B Back     alignment and domain information
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) Back     alignment and domain information
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 2e-07
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 9e-06
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 4e-04
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 2e-05
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 5e-05
2xpi_A 597 Anaphase-promoting complex subunit CUT9; cell cycl 6e-04
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 Back     alignment and structure
 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 10/134 (7%)

Query: 107 YAICGAINDANKVFSSMDER-------DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
             +   +  A+ +      +        L  +N+++LG A  G  +E V +   ++   +
Sbjct: 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196

Query: 160 KPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
            PD  ++   L            ++     M  +             ++    RA  L  
Sbjct: 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF--TAVLLSEEDRATVLKA 254

Query: 219 AESFINSMSRNPGP 232
                 + S  P  
Sbjct: 255 VHKVKPTFSLPPQL 268
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 100.0
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.97
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.97
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.96
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.95
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 99.94
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.94
2gw1_A 514 Mitochondrial precursor proteins import receptor; 99.94
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.93
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.93
2gw1_A514 Mitochondrial precursor proteins import receptor; 99.93
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.92
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.91
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 99.91
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.91
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 99.91
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.91
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.9
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.89
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 99.89
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.89
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.87
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.87
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.85
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.85
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 99.85
3u4t_A272 TPR repeat-containing protein; structural genomics 99.84
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.84
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.83
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.83
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.83
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.83
2xm6_A 490 Protein corresponding to locus C5321 from CFT073 s 99.82
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.82
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.82
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.81
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.81
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.81
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.8
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.8
3u4t_A272 TPR repeat-containing protein; structural genomics 99.8
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.8
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.8
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.79
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 99.79
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.79
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.79
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 99.78
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.78
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.77
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.76
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.76
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.75
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.75
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.74
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.73
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.73
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.73
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.73
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.72
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.72
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.71
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.71
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.69
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.69
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.68
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.68
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.68
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.67
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.67
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.66
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.66
3e4b_A 452 ALGK; tetratricopeptide repeat, superhelix, algina 99.64
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.63
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.63
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.62
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.59
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.58
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.57
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.57
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.56
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.55
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.54
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.53
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.53
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.53
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.52
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.51
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.49
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.48
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.45
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.43
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.43
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.43
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.43
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.4
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.4
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.38
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.37
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.37
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.36
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.35
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.35
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.34
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.34
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.33
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.32
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.32
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.31
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.29
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.28
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.27
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.27
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.27
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.26
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.25
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.22
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.21
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.2
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.18
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.18
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.17
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.17
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.17
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.14
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.14
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.13
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.13
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.12
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.12
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.11
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.11
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.11
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.11
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.09
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.08
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.07
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 99.07
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.07
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.07
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.06
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.05
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.05
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.04
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.03
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.03
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.02
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.02
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.01
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.01
3q49_B137 STIP1 homology and U box-containing protein 1; E3 98.99
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 98.99
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 98.98
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 98.98
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 98.97
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 98.97
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 98.96
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 98.93
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 98.92
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 98.91
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 98.91
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 98.9
3q49_B137 STIP1 homology and U box-containing protein 1; E3 98.9
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 98.9
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 98.88
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 98.86
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 98.86
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 98.84
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 98.83
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 98.83
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 98.83
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 98.83
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 98.83
3k9i_A117 BH0479 protein; putative protein binding protein, 98.83
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 98.8
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 98.8
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 98.8
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 98.79
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 98.78
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 98.75
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 98.74
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 98.73
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 98.72
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 98.71
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 98.71
3k9i_A117 BH0479 protein; putative protein binding protein, 98.69
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.67
2l6j_A111 TPR repeat-containing protein associated with HSP; 98.66
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 98.65
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 98.56
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 98.54
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 98.54
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 98.49
2kat_A115 Uncharacterized protein; NESG, structure, structur 98.47
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 98.47
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.44
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 98.44
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.39
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.38
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 98.37
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 98.34
2l6j_A111 TPR repeat-containing protein associated with HSP; 98.34
2kat_A115 Uncharacterized protein; NESG, structure, structur 98.3
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.18
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 98.17
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 98.13
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 98.09
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.04
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.0
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 97.93
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 97.89
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 97.85
3qww_A433 SET and MYND domain-containing protein 2; methyltr 97.82
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 97.75
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 97.63
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 97.58
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 97.56
1pc2_A152 Mitochondria fission protein; unknown function; NM 97.53
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 97.52
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 97.44
1pc2_A152 Mitochondria fission protein; unknown function; NM 97.36
3lvg_A 624 Clathrin heavy chain 1; SELF assembly, coated PIT, 97.25
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 97.2
1qsa_A 618 Protein (soluble lytic transglycosylase SLT70); al 97.19
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 97.1
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 96.96
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 96.91
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 96.85
1wy6_A172 Hypothetical protein ST1625; helical repeat protei 96.78
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 96.53
3lvg_A 624 Clathrin heavy chain 1; SELF assembly, coated PIT, 96.44
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 96.43
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 96.26
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 96.08
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 96.04
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 95.86
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 95.83
2ff4_A 388 Probable regulatory protein EMBR; winged-helix, te 95.81
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 95.77
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 95.58
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 95.48
1wy6_A172 Hypothetical protein ST1625; helical repeat protei 94.94
4b4t_P 445 26S proteasome regulatory subunit RPN5; hydrolase, 94.85
3lpz_A336 GET4 (YOR164C homolog); protein targeting, tail-an 94.74
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 94.74
2wpv_A312 GET4, UPF0363 protein YOR164C; golgi-ER traffickin 94.38
1v54_E109 Cytochrome C oxidase polypeptide VA; oxidoreductas 94.37
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 94.33
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 94.2
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 93.72
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 93.64
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 93.56
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 93.55
3txn_A 394 26S proteasome regulatory complex subunit P42B; PC 93.51
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 93.5
2y69_E152 Cytochrome C oxidase subunit 5A; electron transpor 92.58
2uwj_G115 Type III export protein PSCG; virulence, chaperone 92.44
4b4t_R 429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 92.36
2wpv_A312 GET4, UPF0363 protein YOR164C; golgi-ER traffickin 92.27
2p58_C116 Putative type III secretion protein YSCG; type III 91.13
4b4t_P 445 26S proteasome regulatory subunit RPN5; hydrolase, 90.85
3lpz_A 336 GET4 (YOR164C homolog); protein targeting, tail-an 90.74
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 90.51
1zbp_A 273 Hypothetical protein VPA1032; alpha-beta protein, 90.24
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 90.09
2uwj_G115 Type III export protein PSCG; virulence, chaperone 90.02
2p58_C116 Putative type III secretion protein YSCG; type III 89.66
2y69_E152 Cytochrome C oxidase subunit 5A; electron transpor 89.41
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 87.43
1v54_E109 Cytochrome C oxidase polypeptide VA; oxidoreductas 83.59
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 80.63
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=9.5e-33  Score=240.59  Aligned_cols=289  Identities=10%  Similarity=-0.031  Sum_probs=264.5

Q ss_pred             chhhhhhcCChHHHHhhhhhccC--cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchh
Q 046638            2 QILTYSRCDSSLDFQNVYSSVRT--RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK   79 (306)
Q Consensus         2 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   79 (306)
                      ++..|.+.|++++|.++|+.+..  ++..+|+.++..|.+.|++++|+++|+++.+.+. .+..++..++.++.+.|+++
T Consensus       278 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~  356 (597)
T 2xpi_A          278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKN  356 (597)
T ss_dssp             TSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHH
Confidence            47789999999999999999876  7999999999999999999999999999998763 47889999999999999999


Q ss_pred             hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046638           80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQK  156 (306)
Q Consensus        80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  156 (306)
                      +|..+++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+   .+..+|+.++.+|.+.|++++|+++|+++.+
T Consensus       357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  435 (597)
T 2xpi_A          357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR  435 (597)
T ss_dssp             HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999775 44789999999999999999999999999864   4677999999999999999999999999988


Q ss_pred             cCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-------C
Q 046638          157 TEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-------N  229 (306)
Q Consensus       157 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~  229 (306)
                      .++ .+..++..++.+|.+.|++++|.++|+++.+..   |.++.+|+.++..|.+.|++++|.++|+++..       .
T Consensus       436 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  511 (597)
T 2xpi_A          436 LFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF---QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN  511 (597)
T ss_dssp             TTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             hCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence            754 377889999999999999999999999998754   45889999999999999999999999999854       3


Q ss_pred             CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638          230 PG--PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG  296 (306)
Q Consensus       230 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  296 (306)
                      |+  ..+|..++.+|.+.|++++|.+.++++++..|+++.++..++.+|.+.|++++|.++|+++.+.+
T Consensus       512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  580 (597)
T 2xpi_A          512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS  580 (597)
T ss_dssp             SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            55  67899999999999999999999999999999999999999999999999999999999998743
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A Back     alignment and structure
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Back     alignment and structure
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A Back     alignment and structure
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} Back     alignment and structure
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} Back     alignment and structure
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 306
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 1e-06
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 40/215 (18%), Positives = 71/215 (33%), Gaps = 13/215 (6%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFS---SMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
                + L  ++   G I  A   F    ++D   L ++ +L            AV  + 
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR 212
           +              +        G ID  +  +   R    L+P   + Y  +   L  
Sbjct: 228 RALSLSPNHAVVHGNLAC-VYYEQGLIDLAIDTY---RRAIELQPHFPDAYCNLANALKE 283

Query: 213 AGFLNEAESFIN--SMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYV 270
            G + EAE   N               L +  +  GN E AVR  ++ L+++P   A + 
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343

Query: 271 LLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            L++V +      +A       Y   IR  P ++ 
Sbjct: 344 NLASVLQQQGKLQEALM----HYKEAIRISPTFAD 374

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.94
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.93
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.83
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.83
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.61
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.59
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.56
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.56
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.53
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.52
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.5
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.49
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.49
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.47
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.27
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.25
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.2
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.18
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.13
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.12
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.06
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.06
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.05
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.05
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.0
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.97
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 98.96
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 98.94
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 98.89
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 98.79
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 98.77
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 98.74
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.74
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 98.7
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 98.68
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 98.67
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.65
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.64
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 98.6
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 98.57
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 98.55
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.53
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.53
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 98.53
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 98.48
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 98.23
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.22
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.18
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 98.13
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 98.11
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.09
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 98.03
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 97.9
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 97.82
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 97.43
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 97.33
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 97.3
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 96.39
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 96.24
d1wy6a1161 Hypothetical protein ST1625 {Archaeon Sulfolobus t 95.8
d1wy6a1161 Hypothetical protein ST1625 {Archaeon Sulfolobus t 94.53
d1v54e_105 Cytochrome c oxidase subunit E {Cow (Bos taurus) [ 94.36
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 93.53
d1v54e_105 Cytochrome c oxidase subunit E {Cow (Bos taurus) [ 92.2
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 81.86
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.1e-24  Score=172.74  Aligned_cols=289  Identities=13%  Similarity=0.027  Sum_probs=246.4

Q ss_pred             chhhhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 046638            2 QILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF   78 (306)
Q Consensus         2 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   78 (306)
                      +...+.+.|++++|++.|+++.   +.++..+..+...|.+.|++++|+..|++.++.. +-+..++..+..++.+.|++
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence            4566888999999999999874   2467889999999999999999999999998864 23567888899999999999


Q ss_pred             hhHHHHHHHHHHcCCCc---------------------------------------------------------------
Q 046638           79 KEGKQMHALIFKIGYDS---------------------------------------------------------------   95 (306)
Q Consensus        79 ~~a~~~~~~~~~~~~~~---------------------------------------------------------------   95 (306)
                      ++|...+....+.....                                                               
T Consensus        84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T d1w3ba_          84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence            99999887776543221                                                               


Q ss_pred             ----cHHHHHHHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHH
Q 046638           96 ----NVFVQNRLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV  168 (306)
Q Consensus        96 ----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  168 (306)
                          +...+..+...+...|++++|...+++..+  | +..+|..+...+...|++++|...+++....+.. +...+..
T Consensus       164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~  242 (388)
T d1w3ba_         164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGN  242 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHH
Confidence                234555667778888999999999988764  3 4568888999999999999999999999877544 5667788


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcC
Q 046638          169 VLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHG  246 (306)
Q Consensus       169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~  246 (306)
                      +..++.+.|++++|...|++..+..   |.++.++..++..+...|++++|.+.++....  +.+...+..+...+...|
T Consensus       243 l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  319 (388)
T d1w3ba_         243 LACVYYEQGLIDLAIDTYRRAIELQ---PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTC---SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence            8999999999999999999988754   55788999999999999999999999998865  355677888889999999


Q ss_pred             CHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638          247 NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR  295 (306)
Q Consensus       247 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  295 (306)
                      ++++|+..|+++++..|+++.++..++.++.+.|++++|+..|++..+.
T Consensus       320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999988763
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure