Citrus Sinensis ID: 046747

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCINT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHEEEEEcc
Coil and Loop (DISEMBL)
LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILShtpislavpvtnattFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCINT
Flexible Loop (DISEMBL)
LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCINT
Low Complexity Region (SEG)
LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNattfaataffglllgERTRVGFSLLGMASIVLGVWLCINT
Disordered region (IsUnstruct)
****LFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI**
Disordered Region (DISOPRED)
*****FASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCINT
Disordered Region (DISEMBL)
LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCINT
Disordered Region (DISPRO)
LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCINT
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCINT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
Q54ZG7	128	Transmembrane protein 234	yes	no	0.793	0.570	0.452	7e-11
A0NGI1	140	Transmembrane protein 234	yes	no	0.815	0.535	0.373	2e-06
Q8WY98	164	Transmembrane protein 234	no	no	0.945	0.530	0.333	1e-05
Q8R1E7	140	Transmembrane protein 234	yes	no	0.793	0.521	0.342	2e-05
Q5RBQ9	166	Transmembrane protein 234	yes	no	0.793	0.439	0.356	2e-05
A7YW81	140	Transmembrane protein 234	yes	no	1.0	0.657	0.308	6e-05

>sp|Q54ZG7|TM234_DICDI Transmembrane protein 234 homolog OS=Dictyostelium discoideum GN=DDB_G0277575 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 47/73 (64%)

Query: 20  QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGM 79
            YT+P L+NLS S  FF  LS   ISL VP++N+ TF  T+  G+LLGE+     S LGM
Sbjct: 54  SYTIPMLINLSGSVVFFYTLSKVDISLVVPISNSLTFLFTSLMGMLLGEKVLHFKSYLGM 113

Query: 80  ASIVLGVWLCINT 92
             ++ GV +C+++
Sbjct: 114 IFVLAGVTICVSS 126

Dictyostelium discoideum (taxid: 44689)

>sp|A0NGI1|TM234_ANOGA Transmembrane protein 234 homolog OS=Anopheles gambiae GN=AGAP012180 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%)

Query: 15  LLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGF 74
           L+  WQY +P ++N   S  +   L  T +SL VP+ N+ TF  TA    LLGER     
Sbjct: 60  LITRWQYLLPLVINQLGSIVYVLTLQRTELSLTVPMANSLTFVFTAITARLLGERQSGWK 119

Query: 75  SLLGMASIVLGVWLC 89
              GM  ++LG  +C
Sbjct: 120 IYCGMTLVILGTVIC 134

Anopheles gambiae (taxid: 7165)

>sp|Q8WY98|TM234_HUMAN Transmembrane protein 234 OS=Homo sapiens GN=TMEM234 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 3   QKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFF 62
           Q+L   +K    L +  +Y +PFLLN   S  ++  L+ T ++LAVP+ N+     T   
Sbjct: 42  QQLLQEMKT---LFLNTEYLMPFLLNQCGSLLYYLTLASTDLTLAVPICNSLAIIFTLIV 98

Query: 63  GLLLGERTRVGFSLLGMASIVLGVWLCINT 92
           G  LGE      ++ GM   V+G+ LCI +
Sbjct: 99  GKALGEDIGGKRAVAGMVLTVIGISLCITS 128

Homo sapiens (taxid: 9606)

>sp|Q8R1E7|TM234_MOUSE Transmembrane protein 234 OS=Mus musculus GN=Tmem234 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 20  QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGM 79
           +Y +PFLLN S S  ++  L+ T ++LAVP+ N+     T   G +LGE      ++ GM
Sbjct: 56  EYLMPFLLNQSGSLLYYLTLASTDLTLAVPICNSLAIVFTLIVGKVLGEDIGGKEAVAGM 115

Query: 80  ASIVLGVWLCINT 92
              + G+ +CI +
Sbjct: 116 VLTITGITVCITS 128

Mus musculus (taxid: 10090)

>sp|Q5RBQ9|TM234_PONAB Transmembrane protein 234 OS=Pongo abelii GN=TMEM234 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query: 20  QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGM 79
           +Y +PFLLN   S  ++  L+ T ++LAVP+ N+     T   G  LGE      ++ GM
Sbjct: 56  EYLMPFLLNQCGSLLYYLTLASTDLTLAVPICNSLAIIFTLIVGKALGEDIGGKRAVAGM 115

Query: 80  ASIVLGVWLCINT 92
              V+G+ LCI +
Sbjct: 116 VLTVIGISLCITS 128

Pongo abelii (taxid: 9601)

>sp|A7YW81|TM234_BOVIN Transmembrane protein 234 OS=Bos taurus GN=TMEM234 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 1   LHQKLFAS--LKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAA 58
           +H++ +A   L+    L +  +Y +PF LN   S  ++  L+ T ++LAVP++N+     
Sbjct: 35  VHERTWARQLLQEMKTLFLNPEYLMPFSLNQCGSLLYYLTLASTDLTLAVPISNSLAIIF 94

Query: 59  TAFFGLLLGERTRVGFSLLGMASIVLGVWLCINT 92
           T   G +LGE      +  GM   V G+ LCI +
Sbjct: 95  TLIVGKVLGEDIGGKRAFAGMVLTVAGITLCITS 128


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.330    0.138    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,787,328
Number of Sequences: 539616
Number of extensions: 832623
Number of successful extensions: 3306
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3297
Number of HSP's gapped (non-prelim): 14
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
225445158	136	PREDICTED: transmembrane protein 234 hom	0.978	0.661	0.744	2e-23
15239774	137	uncharacterized protein [Arabidopsis tha	0.978	0.656	0.655	3e-23
297808023	138	hypothetical protein ARALYDRAFT_488851 [	0.978	0.652	0.644	6e-23
449465679	129	PREDICTED: transmembrane protein 234 hom	0.956	0.682	0.738	2e-21
449528211	129	PREDICTED: LOW QUALITY PROTEIN: transmem	0.956	0.682	0.738	2e-21
357520925	133	hypothetical protein MTR_8g102920 [Medic	0.869	0.601	0.65	3e-21
356523943	132	PREDICTED: transmembrane protein 234 hom	1.0	0.696	0.673	3e-18
224143598	143	predicted protein [Populus trichocarpa]	0.989	0.636	0.780	4e-18
383157444	94	Pinus taeda anonymous locus 0_7153_01 ge	0.956	0.936	0.550	4e-16
383157446	94	Pinus taeda anonymous locus 0_7153_01 ge	0.956	0.936	0.550	7e-16

>gi|225445158|ref|XP_002284070.1| PREDICTED: transmembrane protein 234 homolog [Vitis vinifera] gi|297738785|emb|CBI28030.3| unnamed protein product [Vitis vinifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/90 (74%), Positives = 76/90 (84%)

Query: 1   LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATA 60
           LHQ+L A+ KNWL LL+ WQY++PFL+NLSASATFFAILS TPISLAVPVTNATTFAATA
Sbjct: 46  LHQRLLATYKNWLNLLLTWQYSIPFLINLSASATFFAILSDTPISLAVPVTNATTFAATA 105

Query: 61  FFGLLLGERTRVGFSLLGMASIVLGVWLCI 90
              +LLGE TRV  +LLG   IVLGVW+CI
Sbjct: 106 VSAMLLGEETRVWLALLGTFLIVLGVWICI 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239774|ref|NP_197458.1| uncharacterized protein [Arabidopsis thaliana] gi|15027867|gb|AAK76464.1| unknown protein [Arabidopsis thaliana] gi|19310721|gb|AAL85091.1| unknown protein [Arabidopsis thaliana] gi|332005343|gb|AED92726.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 78/90 (86%)

Query: 1   LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATA 60
           + +K+  +L++W+ LL+ WQY++PFL+NLSASATFFA+LSH PISLAVPVTNATTFAATA
Sbjct: 47  IRRKIMIALRDWINLLLFWQYSIPFLINLSASATFFALLSHAPISLAVPVTNATTFAATA 106

Query: 61  FFGLLLGERTRVGFSLLGMASIVLGVWLCI 90
            FG+LLGE T++G +LLG + IV G+WLC+
Sbjct: 107 AFGILLGEETQIGLALLGTSFIVFGIWLCV 136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808023|ref|XP_002871895.1| hypothetical protein ARALYDRAFT_488851 [Arabidopsis lyrata subsp. lyrata] gi|297317732|gb|EFH48154.1| hypothetical protein ARALYDRAFT_488851 [Arabidopsis lyrata subsp. lyrata]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 78/90 (86%)

Query: 1   LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATA 60
           + +K+  +L++W+ LL+ WQY++PFL+NLSASATFFA+LSH PIS+AVPVTNATTFAATA
Sbjct: 48  IRRKIMIALRDWINLLLFWQYSIPFLINLSASATFFALLSHAPISIAVPVTNATTFAATA 107

Query: 61  FFGLLLGERTRVGFSLLGMASIVLGVWLCI 90
            FG+LLGE T++G +LLG + IV G+WLC+
Sbjct: 108 AFGILLGEETQIGLALLGTSFIVFGIWLCV 137

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465679|ref|XP_004150555.1| PREDICTED: transmembrane protein 234 homolog [Cucumis sativus]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 72/88 (81%)

Query: 4   KLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFG 63
           K F+SL+ WL L  IWQYT+PF LNL+ASATFF ILSH PISLAVPVTNATTFAATA FG
Sbjct: 42  KPFSSLRRWLKLFSIWQYTLPFFLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFG 101

Query: 64  LLLGERTRVGFSLLGMASIVLGVWLCIN 91
           +LLGE TRVG++L G   I  GVWLCIN
Sbjct: 102 MLLGEATRVGYALFGTTLIGFGVWLCIN 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528211|ref|XP_004171099.1| PREDICTED: LOW QUALITY PROTEIN: transmembrane protein 234 homolog [Cucumis sativus]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 72/88 (81%)

Query: 4   KLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFG 63
           K F+SL+ WL L  IWQYT+PF LNL+ASATFF ILSH PISLAVPVTNATTFAATA FG
Sbjct: 42  KPFSSLRRWLKLFSIWQYTLPFXLNLTASATFFTILSHAPISLAVPVTNATTFAATAVFG 101

Query: 64  LLLGERTRVGFSLLGMASIVLGVWLCIN 91
           +LLGE TRVG++L G   I  GVWLCIN
Sbjct: 102 MLLGEATRVGYALFGTTLIGFGVWLCIN 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520925|ref|XP_003630751.1| hypothetical protein MTR_8g102920 [Medicago truncatula] gi|355524773|gb|AET05227.1| hypothetical protein MTR_8g102920 [Medicago truncatula]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 64/80 (80%)

Query: 1   LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATA 60
           L QK+  SL+NWL LL IWQY++PFL+NLSASATFF+ILS  P+SLAVPVTNATTFA+TA
Sbjct: 42  LSQKISISLRNWLKLLSIWQYSIPFLINLSASATFFSILSDAPLSLAVPVTNATTFASTA 101

Query: 61  FFGLLLGERTRVGFSLLGMA 80
            F  LLGE++ +  +  G A
Sbjct: 102 LFATLLGEQSNLPRTFFGTA 121

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523943|ref|XP_003530593.1| PREDICTED: transmembrane protein 234 homolog [Glycine max]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 74/92 (80%)

Query: 1   LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATA 60
           L QK+  SL NW+ LL IWQY++PFL+NLSASATFFAILS  P+SLAVPVTNATTFAATA
Sbjct: 41  LCQKMRISLGNWVKLLSIWQYSIPFLINLSASATFFAILSDAPLSLAVPVTNATTFAATA 100

Query: 61  FFGLLLGERTRVGFSLLGMASIVLGVWLCINT 92
            FG+LLGERT +  +  G A IVLG+  CI++
Sbjct: 101 VFGILLGERTHLPRAFFGTALIVLGLCFCIHS 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143598|ref|XP_002325011.1| predicted protein [Populus trichocarpa] gi|222866445|gb|EEF03576.1| predicted protein [Populus trichocarpa]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 80/91 (87%)

Query: 2   HQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAF 61
           HQKL +SLK+WL+LL+ WQY++PFLLNLSASA FFAILS TPISLAVPVTNATTFAATA 
Sbjct: 53  HQKLLSSLKSWLSLLIFWQYSLPFLLNLSASAIFFAILSDTPISLAVPVTNATTFAATAV 112

Query: 62  FGLLLGERTRVGFSLLGMASIVLGVWLCINT 92
           FG+LLGE TRV F+LLG  SIV+GVWLC  T
Sbjct: 113 FGMLLGEDTRVDFALLGTGSIVIGVWLCCVT 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383157444|gb|AFG61064.1| Pinus taeda anonymous locus 0_7153_01 genomic sequence gi|383157450|gb|AFG61067.1| Pinus taeda anonymous locus 0_7153_01 genomic sequence

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 1/89 (1%)

Query: 5  LFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFG- 63
          L   +++W+ LL +WQY++PF++NLSAS  FF +L  TPISLAVPVTNA TFAATA  G 
Sbjct: 5  LIDYIEDWIGLLCVWQYSIPFIVNLSASVGFFLMLGDTPISLAVPVTNAVTFAATAVAGS 64

Query: 64 LLLGERTRVGFSLLGMASIVLGVWLCINT 92
          +LLGE   +  SL+G+  I+ G+WLCI +
Sbjct: 65 VLLGEDMHIKHSLVGLVLIITGIWLCITS 93

Source: Pinus taeda

Species: Pinus taeda

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383157446|gb|AFG61065.1| Pinus taeda anonymous locus 0_7153_01 genomic sequence gi|383157448|gb|AFG61066.1| Pinus taeda anonymous locus 0_7153_01 genomic sequence gi|383157452|gb|AFG61068.1| Pinus taeda anonymous locus 0_7153_01 genomic sequence gi|383157454|gb|AFG61069.1| Pinus taeda anonymous locus 0_7153_01 genomic sequence gi|383157456|gb|AFG61070.1| Pinus taeda anonymous locus 0_7153_01 genomic sequence

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 1/89 (1%)

Query: 5  LFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFG- 63
          L   +++W+ LL +WQY++PF++NLSAS  FF +L  TPISLAVPVTNA TFAATA  G 
Sbjct: 5  LIDYIEHWIGLLCVWQYSIPFIVNLSASVGFFLMLGDTPISLAVPVTNAVTFAATAVAGS 64

Query: 64 LLLGERTRVGFSLLGMASIVLGVWLCINT 92
          +LLGE   +  SL+G+  I+ G+WLCI +
Sbjct: 65 VLLGEDMHIKHSLVGLVLIITGIWLCITS 93

Source: Pinus taeda

Species: Pinus taeda

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
TAIR|locus:2180796	137	AT5G19570 "AT5G19570" [Arabido	0.978	0.656	0.511	3.8e-23
DICTYBASE|DDB_G0277575	128	DDB_G0277575 "unknown" [Dictyo	0.782	0.562	0.361	1.1e-07
UNIPROTKB|Q8WY98	164	TMEM234 "Transmembrane protein	1.0	0.560	0.276	1.1e-05
MGI|MGI:1924049	140	Tmem234 "transmembrane protein	0.793	0.521	0.287	6.3e-05
UNIPROTKB|A7YW81	140	TMEM234 "Transmembrane protein	1.0	0.657	0.265	8.1e-05
ASPGD|ASPL0000072949	205	AN4565 [Emericella nidulans (t	0.782	0.351	0.263	0.00024

TAIR|locus:2180796 AT5G19570 "AT5G19570" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 46/90 (51%), Positives = 64/90 (71%)

Query:     1 LHQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNXXXXXXXX 60
             + +K+  +L++W+ LL+ WQY++PFL+NLSASATFFA+LSH PISLAVPVTN        
Sbjct:    47 IRRKIMIALRDWINLLLFWQYSIPFLINLSASATFFALLSHAPISLAVPVTNATTFAATA 106

Query:    61 XXXXXXXERTRVGFSLLGMASIVLGVWLCI 90
                    E T++G +LLG + IV G+WLC+
Sbjct:   107 AFGILLGEETQIGLALLGTSFIVFGIWLCV 136

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0277575 DDB_G0277575 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/72 (36%), Positives = 37/72 (51%)

Query:    21 YTVPFLLNLSASATFFAILSHTPISLAVPVTNXXXXXXXXXXXXXXXERTRVGFSLLGMA 80
             YT+P L+NLS S  FF  LS   ISL VP++N               E+     S LGM 
Sbjct:    55 YTIPMLINLSGSVVFFYTLSKVDISLVVPISNSLTFLFTSLMGMLLGEKVLHFKSYLGMI 114

Query:    81 SIVLGVWLCINT 92
              ++ GV +C+++
Sbjct:   115 FVLAGVTICVSS 126

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q8WY98 TMEM234 "Transmembrane protein 234" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 26/94 (27%), Positives = 44/94 (46%)

Query:     1 LHQKLFAS--LKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNXXXXXX 58
             +H+  +A   L+    L +  +Y +PFLLN   S  ++  L+ T ++LAVP+ N      
Sbjct:    35 VHEPTWAQQLLQEMKTLFLNTEYLMPFLLNQCGSLLYYLTLASTDLTLAVPICNSLAIIF 94

Query:    59 XXXXXXXXXERTRVGFSLLGMASIVLGVWLCINT 92
                      E      ++ GM   V+G+ LCI +
Sbjct:    95 TLIVGKALGEDIGGKRAVAGMVLTVIGISLCITS 128

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1924049 Tmem234 "transmembrane protein 234" [Mus musculus (taxid:10090)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query:    20 QYTVPFLLNLSASATFFAILSHTPISLAVPVTNXXXXXXXXXXXXXXXERTRVGFSLLGM 79
             +Y +PFLLN S S  ++  L+ T ++LAVP+ N               E      ++ GM
Sbjct:    56 EYLMPFLLNQSGSLLYYLTLASTDLTLAVPICNSLAIVFTLIVGKVLGEDIGGKEAVAGM 115

Query:    80 ASIVLGVWLCINT 92
                + G+ +CI +
Sbjct:   116 VLTITGITVCITS 128

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A7YW81 TMEM234 "Transmembrane protein 234" [Bos taurus (taxid:9913)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 25/94 (26%), Positives = 43/94 (45%)

Query:     1 LHQKLFAS--LKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNXXXXXX 58
             +H++ +A   L+    L +  +Y +PF LN   S  ++  L+ T ++LAVP++N      
Sbjct:    35 VHERTWARQLLQEMKTLFLNPEYLMPFSLNQCGSLLYYLTLASTDLTLAVPISNSLAIIF 94

Query:    59 XXXXXXXXXERTRVGFSLLGMASIVLGVWLCINT 92
                      E      +  GM   V G+ LCI +
Sbjct:    95 TLIVGKVLGEDIGGKRAFAGMVLTVAGITLCITS 128

GO:0016021 "integral to membrane" evidence=IEA

ASPGD|ASPL0000072949 AN4565 [Emericella nidulans (taxid:162425)]

 Score = 93 (37.8 bits), Expect = 0.00024, P = 0.00024
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query:    21 YTVPFLLNLSASATFFAILSHTPISLAVPVTNXXXXXXXXXXXXXXXERTRVGFSLLGMA 80
             Y+VP ++NL+ S  FF ++    +SL VP+ N                +     + LGMA
Sbjct:   132 YSVPLIINLTGSVWFFLLVGKHELSLTVPLANSSAFLFTVLGEWYVERKVIARETWLGMA 191

Query:    81 SIVLGVWLCINT 92
              ++ G+ +C+ +
Sbjct:   192 LVLGGIAICVQS 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.137   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       92        77   0.00091  102 3  11 22  0.43    28
                                                     29  0.50    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  544 (58 KB)
  Total size of DFA:  103 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.25u 0.09s 7.34t   Elapsed:  00:00:01
  Total cpu time:  7.25u 0.09s 7.34t   Elapsed:  00:00:01
  Start:  Thu May  9 22:15:15 2013   End:  Thu May  9 22:15:16 2013

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	92
pfam10639	112	pfam10639, UPF0546, Uncharacterized protein family	2e-16

>gnl|CDD|220831 pfam10639, UPF0546, Uncharacterized protein family UPF0546

 Score = 67.7 bits (166), Expect = 2e-16
 Identities = 32/72 (44%), Positives = 42/72 (58%)

Query: 19  WQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLG 78
            +Y +PFLLN S S  FF +L  T +SLAVP+ N+  F  T   G LLGE+     + LG
Sbjct: 41  PKYLIPFLLNQSGSVVFFLLLGKTDLSLAVPIANSLAFVFTVLTGWLLGEKVLGRKTWLG 100

Query: 79  MASIVLGVWLCI 90
           M  +V G  LC+
Sbjct: 101 MGLVVAGTALCV 112

This family of proteins has no known function. Many members are annotated as potential transmembrane proteins. Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	99.97
KOG4831	125	consensus Unnamed protein [Function unknown]	99.95
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.43
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.22
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.85
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.8
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.72
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	98.67
PRK10650	109	multidrug efflux system protein MdtI; Provisional	98.46
COG2076	106	EmrE Membrane transporters of cations and cationic	98.43
COG2510	140	Predicted membrane protein [Function unknown]	98.34
PRK11431	105	multidrug efflux system protein; Provisional	98.33
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.29
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.23
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.76
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.61
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.59
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.58
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.56
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.44
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.23
PRK15430	296	putative chloramphenical resistance permease RarD;	97.11
PRK15430	296	putative chloramphenical resistance permease RarD;	96.91
PRK11689	295	aromatic amino acid exporter; Provisional	96.88
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	96.82
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.77
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	96.69
PRK10532	293	threonine and homoserine efflux system; Provisiona	96.61
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.59
PRK11272	292	putative DMT superfamily transporter inner membran	96.57
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.42
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.3
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	96.18
PLN00411	358	nodulin MtN21 family protein; Provisional	96.15
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.12
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	95.47
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	95.46
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	95.44
PRK11689	295	aromatic amino acid exporter; Provisional	95.4
PRK11272	292	putative DMT superfamily transporter inner membran	95.23
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	95.02
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.71
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	94.18
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	92.32
PLN00411	358	nodulin MtN21 family protein; Provisional	92.25
PRK13499	345	rhamnose-proton symporter; Provisional	91.9
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	91.85
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	91.21
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	89.32
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	87.97
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	86.68
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	83.3
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	81.59
PRK13499	345	rhamnose-proton symporter; Provisional	81.26

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=99.97  E-value=9e-32  Score=184.04  Aligned_cols=84  Identities=44%  Similarity=0.644  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhh
Q 046747            7 ASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGV   86 (92)
Q Consensus         7 ~~~~~~~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv   86 (92)
                      +..+++..+++||+|++||++||+||++|+++|+++|+|+|||++||++|++|+++|+++|||..++++++|++||+.|+
T Consensus        30 ~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv  109 (113)
T PF10639_consen   30 QLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGV  109 (113)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCe
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeee
Q 046747           87 WLCI   90 (92)
Q Consensus        87 ~L~~   90 (92)
                      .+|+
T Consensus       110 ~Lcv  113 (113)
T PF10639_consen  110 ALCV  113 (113)
T ss_pred             eeeC
Confidence            9996

Many members are annotated as potential transmembrane proteins.

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=99.95  E-value=6.4e-28  Score=165.37  Aligned_cols=90  Identities=50%  Similarity=0.890  Sum_probs=86.4

Q ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHH
Q 046747            2 HQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMAS   81 (92)
Q Consensus         2 ~~~~~~~~~~~~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~L   81 (92)
                      ++|..+.++++..++.||+|++||++|||||.+||.+|+++|+|+|+|++||++|+||++.|+.+|||....+.++|+.+
T Consensus        36 ~~k~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~l  115 (125)
T KOG4831|consen   36 SRKIMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSL  115 (125)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhH
Confidence            36777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhheeeec
Q 046747           82 IVLGVWLCIN   91 (92)
Q Consensus        82 I~~Gv~L~~~   91 (92)
                      |+.|+.||+.
T Consensus       116 iv~Gi~Lci~  125 (125)
T KOG4831|consen  116 IVFGIWLCIL  125 (125)
T ss_pred             HhhhhhheeC
Confidence            9999999974

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.43  E-value=4.3e-13  Score=92.88  Aligned_cols=78  Identities=23%  Similarity=0.230  Sum_probs=69.0

Q ss_pred             HHHHHhhH--HHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH--hhhccccchhhHHHHHhhhhhe
Q 046747           12 WLALLVIW--QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLL--LGERTRVGFSLLGMASIVLGVW   87 (92)
Q Consensus        12 ~~~ll~n~--~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~--l~e~~~~~~~~~G~~LI~~Gv~   87 (92)
                      ....+.||  ++..++.++.++.++|.+.++|.|+|.|||+. |+.|+++.++++.  +.+|..++++++|+++|++|+.
T Consensus        40 ~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~-sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~  118 (129)
T PRK02971         40 ALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL-SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVW  118 (129)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            45567888  99999999999999999999999999999995 9999999998874  5666668888999999999998


Q ss_pred             eee
Q 046747           88 LCI   90 (92)
Q Consensus        88 L~~   90 (92)
                      +..
T Consensus       119 lv~  121 (129)
T PRK02971        119 LIN  121 (129)
T ss_pred             Hhc
Confidence            754

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=99.22  E-value=3e-11  Score=81.37  Aligned_cols=70  Identities=16%  Similarity=0.178  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeeec
Q 046747           21 YTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCIN   91 (92)
Q Consensus        21 ~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~~   91 (92)
                      +...+..+..+..+|.+.+++.|+|.|||+. +++++.+++.|+++++|..++++++|+++|+.|+.++..
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~-~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPML-SLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3444577899999999999999999999996 799999999999988888888999999999999987654

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.85  E-value=1.1e-08  Score=70.52  Aligned_cols=70  Identities=11%  Similarity=0.192  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           20 QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        20 ~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      +.+..+.++.++-.+|...+++.|+|.|||+--+++++.+++.|+++++|..++.+++|+.+|+.|+.+.
T Consensus        32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l  101 (120)
T PRK10452         32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI  101 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence            4678889999999999999999999999999778999999999999888888999999999999999653

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.80  E-value=2.4e-08  Score=66.08  Aligned_cols=87  Identities=21%  Similarity=0.163  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHh
Q 046747            3 QKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASI   82 (92)
Q Consensus         3 ~~~~~~~~~~~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI   82 (92)
                      +|..+..+...+--..|..+.+.+.+..+...|++.++..| +.++|+. +++.+++++.++.+.+|..+++++.|++++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~-~~~pi~~~ll~~~~~~er~~~~~~~a~~l~   97 (113)
T PF13536_consen   20 GRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIF-SLSPIFTALLSWLFFKERLSPRRWLAILLI   97 (113)
T ss_pred             ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHH-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44444444333311223344567777789999999999999 7888886 899999999999877778888999999999


Q ss_pred             hhhheeeec
Q 046747           83 VLGVWLCIN   91 (92)
Q Consensus        83 ~~Gv~L~~~   91 (92)
                      ++|+.++..
T Consensus        98 ~~Gv~li~~  106 (113)
T PF13536_consen   98 LIGVILIAW  106 (113)
T ss_pred             HHHHHHHhh
Confidence            999987653

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.72  E-value=5.3e-08  Score=66.01  Aligned_cols=69  Identities=12%  Similarity=0.065  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           21 YTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        21 ~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      .+..+..+.++-.++...+++.|+|.|||+--+++.+.+++.|+++++|..++.+++|+.+|++|+.+.
T Consensus        33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l  101 (110)
T PRK09541         33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI  101 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            356778888888888999999999999999778999999999999888888989999999999998753

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=98.67  E-value=8.4e-08  Score=62.59  Aligned_cols=63  Identities=14%  Similarity=0.082  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHh
Q 046747           20 QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASI   82 (92)
Q Consensus        20 ~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI   82 (92)
                      ..+.....|..+-.++...+++.|+|.|||+-.+++.+.+.+.|.++++|..++.+++|+.+|
T Consensus        31 ~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   31 PTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             ---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            344455678888889999999999999999988899999999999888888788889999986

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=98.46  E-value=6.1e-07  Score=60.96  Aligned_cols=74  Identities=16%  Similarity=0.133  Sum_probs=58.9

Q ss_pred             HhhHHHH-HHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           16 LVIWQYT-VPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        16 l~n~~~~-~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      +++|... .-...+..+-.+.-..+++-|++.|||+=-+++.+.+++.|+++++|..++.+++|+.+|+.|+.+.
T Consensus        32 f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         32 FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            3455433 3344444455555588999999999999988999999999999888888999999999999999753

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=98.43  E-value=7.7e-07  Score=60.58  Aligned_cols=72  Identities=22%  Similarity=0.221  Sum_probs=58.1

Q ss_pred             hhHHHHHHHHHHHHHHHHH-HHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747           17 VIWQYTVPFLLNLSASATF-FAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL   88 (92)
Q Consensus        17 ~n~~~~~p~~ln~~gS~~~-~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L   88 (92)
                      ++++..+-.++..+.|..+ -..+++.|++.||++=-..+-+.|++.|+++++|..+..+++|+.+|++|+..
T Consensus        28 ~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~  100 (106)
T COG2076          28 TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIG  100 (106)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHH
Confidence            3444444444444455444 48999999999999999999999999999988888788889999999999864

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.34  E-value=1.9e-06  Score=61.08  Aligned_cols=65  Identities=20%  Similarity=0.222  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           25 FLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        25 ~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      .+.-..+..+||+.|++-+-|..+|+ .+++-+++++.++++-+|..+.++|+|++||.+|+.+..
T Consensus        74 Gla~glswl~Yf~ALk~G~as~VvPl-dk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          74 GLAGGLSWLLYFRALKKGKASRVVPL-DKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHHHHHhcCCcceEEEc-ccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            35667788999999999999999999 599999999999885555557788999999999998864

>PRK11431 multidrug efflux system protein; Provisional

Probab=98.33  E-value=2.6e-06  Score=57.40  Aligned_cols=68  Identities=19%  Similarity=0.168  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           22 TVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        22 ~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      +.-...+.++-.+.-..+++.|++.||++=-.++-+.+++.|+++++|..++.+++|+.+|+.|+...
T Consensus        33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            34456666666677789999999999999988999999999999888888889999999999998753

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.29  E-value=8e-07  Score=56.73  Aligned_cols=67  Identities=19%  Similarity=0.187  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           23 VPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        23 ~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      .+.+.+..+..+|++.+++.|.+.+.++ +.+.=+++++.++.+.+|..++++++|+++++.|+.+..
T Consensus        59 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   59 LGLLGTALAYLLYFYALKYISASIVSIL-QYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hhccceehHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4444578899999999999999999999 489999999999998888889999999999999998754

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.23  E-value=2e-06  Score=66.48  Aligned_cols=78  Identities=22%  Similarity=0.245  Sum_probs=69.3

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           12 WLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        12 ~~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      -...++||..+.|++++..|.+.-+..++-+|.|+.-|+ .+++.+++++.+.++-+|+..++.+.|+.+++.|+.+++
T Consensus        44 ~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Pl-g~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   44 GRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPL-GALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             hhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHH-HhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            457899999999999999999999999999999999999 699999999999764445556677999999999999876

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.76  E-value=8.8e-05  Score=55.35  Aligned_cols=68  Identities=18%  Similarity=0.211  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           22 TVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        22 ~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      ......+......+++.+++.|.+.+.|+ +..+=+++++.++++.+|..++++|+|+++++.|+.+..
T Consensus        67 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l-~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~  134 (281)
T TIGR03340        67 AISAVANMVYFLGLAQAYHHADVGLVYPL-ARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG  134 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCChhhhhhH-HhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            34445566777778889999999999999 477888999999887777788899999999999998653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.61  E-value=0.00016  Score=54.99  Aligned_cols=64  Identities=17%  Similarity=0.320  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchh----hHHHHHhhhhheeeec
Q 046747           28 NLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFS----LLGMASIVLGVWLCIN   91 (92)
Q Consensus        28 n~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~----~~G~~LI~~Gv~L~~~   91 (92)
                      ...|-+.|+...++..+|.|+|+.+.++++++.+.+.++.+|...+++    ++|++++++|+.++..
T Consensus        69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~  136 (290)
T TIGR00776        69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSR  136 (290)
T ss_pred             HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEe
Confidence            566668889999999999999999889999999999876656556677    8999999999998753

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.59  E-value=0.00023  Score=53.07  Aligned_cols=65  Identities=18%  Similarity=0.230  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747           23 VPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL   88 (92)
Q Consensus        23 ~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L   88 (92)
                      .+...-..+-.+|++.+++.|.+.+.|.. .+.=+++.+.|+++.+|..+..+++|.++|+.|+.+
T Consensus       216 ~~~~~s~l~~~l~~~al~~~~a~~~~~~~-~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       216 LGGLMIGGAYALVLWAMTRLPVATVVALR-NTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCceEEEeec-ccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            33444556677899999999999999995 778899999998876666677889999999999975

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.58  E-value=0.00085  Score=50.46  Aligned_cols=73  Identities=27%  Similarity=0.238  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeeec
Q 046747           18 IWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCIN   91 (92)
Q Consensus        18 n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~~   91 (92)
                      .+++.+|-++|.....+.++.++..|-+ .|=+.+.+--++|++..+++.++..++++|+++.+.++|+.++..
T Consensus        17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~-t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~   89 (244)
T PF04142_consen   17 TLKLAVPALLYAIQNNLQFVALSYLDPS-TFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQL   89 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeec
Confidence            5789999999999999999999999966 677778999999999999888888788999999999999998653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.56  E-value=0.00029  Score=50.92  Aligned_cols=69  Identities=14%  Similarity=0.095  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           21 YTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        21 ~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      ...+.+........+++.+++.|.+.+.++ +++.=+++++.++++.+|+.++++++|+++.++|+.++.
T Consensus        50 ~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii-~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~  118 (260)
T TIGR00950        50 LLLGALQIGVFYVLYFVAVKRLPVGEAALL-LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL  118 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhHHH-HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence            445555556777888999999999999888 588888899989887777888899999999999998764

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.44  E-value=0.00063  Score=48.78  Aligned_cols=72  Identities=21%  Similarity=0.127  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHH-HhhhccccchhhHHHHHhhhhheeeec
Q 046747           19 WQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGL-LLGERTRVGFSLLGMASIVLGVWLCIN   91 (92)
Q Consensus        19 ~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~-~l~e~~~~~~~~~G~~LI~~Gv~L~~~   91 (92)
                      +....+......+...|++.+++.+.+.+.++ ++++-+++.+.++ ++.+|..+++++.|..+...|+.+...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~  143 (292)
T COG0697          71 LLLLLALLGLALPFLLLFLALKYTSASVASLI-IGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILL  143 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheec
Confidence            56778888888889999999999999999999 5999999999996 665666688889999999999988653

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.23  E-value=0.0017  Score=46.90  Aligned_cols=63  Identities=21%  Similarity=0.074  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhh
Q 046747           23 VPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGV   86 (92)
Q Consensus        23 ~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv   86 (92)
                      .+......+..+|++.+++.+.+.+-.+ +.+.=+++++.++++.+|+.+.++++|.++++.|+
T Consensus       197 ~~~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       197 LGLIGTALAYFLWNKGLTLVDPSAASIL-ALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            4444567788899999999999999999 58999999999988777777888899999999997

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.11  E-value=0.0016  Score=49.05  Aligned_cols=67  Identities=12%  Similarity=0.035  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           23 VPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        23 ~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      .+..........|++.+.+.+.+.|.-+ +.++=+++++.++++.+|..++++|+|+++.++|+.+..
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         78 VSAVLIGGNWLLFIWAVNNHHMLEASLG-YFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            4455566778899999999999999988 688889999999887777788999999999999998754

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.91  E-value=0.0023  Score=48.26  Aligned_cols=63  Identities=8%  Similarity=-0.060  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeeec
Q 046747           28 NLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCIN   91 (92)
Q Consensus        28 n~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~~   91 (92)
                      -..+-.+|++.+++.|-+.+-|+. -+.=+++.+.|+++.+|.++...++|+++|++|+.+...
T Consensus       223 t~i~~~~~~~a~~~~~a~~~s~~~-~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        223 TTVPLLCFTAAATRLRLSTLGFFQ-YIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            335667889999999999999994 899999999999877777788999999999988876543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.88  E-value=0.0031  Score=47.56  Aligned_cols=60  Identities=20%  Similarity=0.107  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           29 LSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        29 ~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      ..+-.+|++.+++.|-+.+-++. .+.=+++++.|+++.+|..+...++|+++|+.|+.++
T Consensus       226 ~~~~~l~~~al~~~~a~~~s~~~-~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        226 GFGYAAWNVGILHGNMTLLATAS-YFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHH-HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            33456789999999999999995 8888999999988666666778899999999999765

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=96.82  E-value=0.0037  Score=46.88  Aligned_cols=71  Identities=17%  Similarity=0.126  Sum_probs=56.7

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           19 WQYTVPFLL-NLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        19 ~~~~~p~~l-n~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      ++.+.|..+ +.....++++.+...+.|.+--+ .+++=+++++.++++.+|..++++++|++++++|+.+..
T Consensus        65 ~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li-~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        65 LKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTI-KAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            344444433 34555678899999999999877 599999999999988888888899999999999998653

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.77  E-value=0.005  Score=44.07  Aligned_cols=59  Identities=29%  Similarity=0.278  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           30 SASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        30 ~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      .+-.+|++.+++.+.+.+.|+. .+.-+++++.++++.+|.++.++++|..+|+.|+.+.
T Consensus       227 i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~  285 (292)
T COG0697         227 LAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLA  285 (292)
T ss_pred             HHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999994 7888888888988777777888899999999998764

>TIGR00688 rarD rarD protein

Probab=96.69  E-value=0.0049  Score=45.13  Aligned_cols=65  Identities=12%  Similarity=-0.071  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           24 PFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        24 p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      ...+.......|++.+++.+.+.|--+. .++=+++++.++++.+|+.++++|+|+++.++|+.+.
T Consensus        76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~-~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li  140 (256)
T TIGR00688        76 CGLLIGFNWWLFIWAVNNGSSLEVSLGY-LINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN  140 (256)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            3334556678999999999999888885 6677788888888777888889999999999999765

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=96.61  E-value=0.0062  Score=45.84  Aligned_cols=67  Identities=15%  Similarity=0.090  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           22 TVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        22 ~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      ..+......+-.+|++.++|.+-+.+-++. .+.=+++++.|+++.+|..+..+++|.++|+.|+.+.
T Consensus       213 ~lgv~~t~~~~~l~~~~~~~~~a~~as~~~-~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~  279 (293)
T PRK10532        213 AVAILSTALPYSLEMIALTRLPTRTFGTLM-SMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGS  279 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhHHHHHH-HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence            455555667777999999999999999994 9999999999988666667778899999999998653

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.0028  Score=50.57  Aligned_cols=76  Identities=18%  Similarity=0.181  Sum_probs=68.8

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeeec
Q 046747           15 LLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCIN   91 (92)
Q Consensus        15 ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~~   91 (92)
                      .+..|..++|.+....|=+.-|..-+=+|-|+..|+- +++.+++++.+..+-||+....-.+|+.+.++|-.+++.
T Consensus        61 yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLG-Alsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   61 YLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLG-ALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI  136 (335)
T ss_pred             hhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccch-hHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence            4577999999999999999999999999999999995 999999999998877777777889999999999998764

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.57  E-value=0.007  Score=45.46  Aligned_cols=64  Identities=20%  Similarity=0.249  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           25 FLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        25 ~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      ......+-.+|++.+++.+-+.+-++ ..+.=+++++.++++.+|..+..+++|.++|+.|+.+.
T Consensus       220 i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~  283 (292)
T PRK11272        220 VFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV  283 (292)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence            33445566789999999999999999 48888999999988777777888899999999999764

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.42  E-value=0.014  Score=44.15  Aligned_cols=71  Identities=17%  Similarity=0.153  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           19 WQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        19 ~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      ++|...-.+|..++.+-...|+..|.+.-.=+ .|..-+.+++.++++.++..+++++++++++++|+.+..
T Consensus        65 ~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~-ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~  135 (303)
T PF08449_consen   65 KKYAILSFLFFLASVLSNAALKYISYPTQIVF-KSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFT  135 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH-hhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheee
Confidence            45777778999999999999999888765555 799999999999988888888899999999999998865

; GO: 0055085 transmembrane transport

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.30  E-value=0.016  Score=45.24  Aligned_cols=71  Identities=20%  Similarity=0.111  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           19 WQYTVPFLLNLSA-SATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        19 ~~~~~p~~ln~~g-S~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      ++-++|..+-+.+ -..-+..++..+.|.+.=+ .+++=+++++.++++.+|..++++++|+++++.|+.+++
T Consensus       114 ~~~llp~gl~~~~~~~~~~~sl~~~svs~~~ii-ka~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        114 LKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVV-KAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH-HHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            4456676665543 2223478899999998888 599999999999988888889899999999999999876

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=96.18  E-value=0.015  Score=43.76  Aligned_cols=60  Identities=15%  Similarity=0.204  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           29 LSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        29 ~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      ..+-.+|+..++|.+-+.+-++. .+.=+++++.|+++.+|..+...++|.++|+.|+.+.
T Consensus       226 ~~~~~l~~~~l~~~~a~~~s~~~-~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~  285 (299)
T PRK11453        226 IVGYGIWGTLLGRYETWRVAPLS-LLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN  285 (299)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            44556888899999988888885 7888889999988666666778899999999999864

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=96.15  E-value=0.01  Score=46.93  Aligned_cols=60  Identities=12%  Similarity=0.032  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           29 LSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        29 ~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      ..+-.+|++.+++.+-+.+-+. .-+.=+++++.|+++.+|..++..++|.++|+.|+.+.
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~-~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~  326 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIF-KPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAV  326 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHH-HhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence            3466678899999999999999 48999999999988555566778899999999999874

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.12  E-value=0.018  Score=43.77  Aligned_cols=68  Identities=6%  Similarity=0.074  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhc-cCCceeehhhHHHHHHHHHHHHHHHhhhccccchhh----HHHHHhhhhheeee
Q 046747           21 YTVPFLLNLSASATFFAILS-HTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSL----LGMASIVLGVWLCI   90 (92)
Q Consensus        21 ~~~p~~ln~~gS~~~~~~L~-~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~----~G~~LI~~Gv~L~~   90 (92)
                      .+.+.. ...+-..|+..++ +.+.+.++++. .+.=+.+.+.+.++.+|..+++.+    +|+++|+.|+.+..
T Consensus       215 ~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls-~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       215 ILPGLM-WGIGNFFYLFSAQPKVGVATSFSLS-QLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHH-HHHHHHHHHHHcccccchhhHHHHH-HHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            334444 6777788888889 99999999997 777777777787644444455668    99999999998764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=95.47  E-value=0.056  Score=40.71  Aligned_cols=57  Identities=26%  Similarity=0.294  Sum_probs=43.2

Q ss_pred             HHHHHHhcc-CCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           33 ATFFAILSH-TPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        33 ~~~~~~L~~-~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      ..++..+.. .+.+.|.-+ +++.=+++.+.++++.+|+.++++++|+++.++|+.++.
T Consensus        74 ~~~~~~~~~~~~a~~a~~l-~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~  131 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLV-LQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI  131 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHH-HHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence            344555554 466777666 466667888889887778888899999999999998765

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=95.46  E-value=0.048  Score=43.21  Aligned_cols=71  Identities=20%  Similarity=0.349  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           19 WQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        19 ~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      |+|+..-++...|--+....++.+.+|-+-=+ ++.+-+++++.++.+.++.-.+.+++|+++.+.|+.+.+
T Consensus        80 w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL-~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~  150 (334)
T PF06027_consen   80 WKYFLLALLDVEANYLVVLAYQYTSVTSVQLL-DCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV  150 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccHhHHHhh-hhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence            56888888999999999999999999887766 899999999999987777778888999999999988754

Some of the sequences in this family are annotated as putative membrane proteins.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=95.44  E-value=0.043  Score=42.56  Aligned_cols=61  Identities=23%  Similarity=0.415  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH-hhhccccchhh---HHHHHhhhhheeee
Q 046747           30 SASATFFAILSHTPISLAVPVTNATTFAATAFFGLL-LGERTRVGFSL---LGMASIVLGVWLCI   90 (92)
Q Consensus        30 ~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~-l~e~~~~~~~~---~G~~LI~~Gv~L~~   90 (92)
                      .|-+.-+...++.-+|.+.|+.+.+..+.|.+.|.+ +||=.......   +++++|++|+.++.
T Consensus        57 iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts  121 (269)
T PF06800_consen   57 IGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS  121 (269)
T ss_pred             HHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            344444678899999999999999999999999976 77766444433   46789999998865

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK11689 aromatic amino acid exporter; Provisional

Probab=95.40  E-value=0.09  Score=39.60  Aligned_cols=49  Identities=14%  Similarity=0.099  Sum_probs=39.4

Q ss_pred             cCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           41 HTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        41 ~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      ..+-+.+- +.++++=+++++.++++.+|+.++++++|+++-.+|+.++.
T Consensus        88 ~~~a~~a~-~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~  136 (295)
T PRK11689         88 RRQAIEVG-MVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL  136 (295)
T ss_pred             cccchHHH-HHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence            44545554 34788888999999887788889999999999999998875

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=95.23  E-value=0.072  Score=39.99  Aligned_cols=66  Identities=23%  Similarity=0.179  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHh-ccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747           23 VPFLLNLSASATFFAIL-SHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        23 ~p~~ln~~gS~~~~~~L-~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      .+.+....+..++++.. .+.+.+.+.-+ ++++=+++++.++++ +|+.++++++|+++.++|+.+..
T Consensus        74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l-~~~~Pl~~~lla~~~-~e~~~~~~~~~~~la~~Gv~ll~  140 (292)
T PRK11272         74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVV-VATVPLFTLCFSRLF-GIRTRKLEWLGIAIGLAGIVLLN  140 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHH-HHHHHHHHHHHHHHh-cccCchhHHHHHHHHHHhHHHHh
Confidence            33333334556666777 88888888777 588888888888765 56778888999999999987753

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=95.02  E-value=0.065  Score=41.58  Aligned_cols=70  Identities=17%  Similarity=0.324  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH-hhhccccc---hhhHHHHHhhhhhee
Q 046747           18 IWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLL-LGERTRVG---FSLLGMASIVLGVWL   88 (92)
Q Consensus        18 n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~-l~e~~~~~---~~~~G~~LI~~Gv~L   88 (92)
                      .|+-+.+-++...|.+.+++.-++.-+..+||+. =++-+...+-|.+ ++|++..+   ..++|++||++|..+
T Consensus       195 ~~~nil~G~~w~ignl~~~is~~~~G~a~af~lS-Q~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  195 SWKNILTGLIWGIGNLFYLISAQKNGVATAFTLS-QLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHH-hHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            4666888899999999999999999999999997 5678888888876 77766433   357899999998764

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00803 nst UDP-galactose transporter

Probab=94.71  E-value=0.036  Score=39.94  Aligned_cols=70  Identities=13%  Similarity=0.071  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747           18 IWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL   88 (92)
Q Consensus        18 n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L   88 (92)
                      ++..+...+++..+.++-.+++++.|-. ..=++.++.=+++.+.+.+++++..+...++|..+++.|+++
T Consensus       152 ~~~~~~~~~~~a~~~~~v~~vlk~~~~~-~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       152 PTAVWIVGLLNVGGGLCIGGVVRYADNT-TKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             chHHHHHHHHHHhcCceeeehhHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            4556667777778888888888888876 555567888899999998888888888999999999999875

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=94.18  E-value=0.059  Score=40.39  Aligned_cols=56  Identities=14%  Similarity=0.131  Sum_probs=43.0

Q ss_pred             HHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           33 ATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        33 ~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      ..|++.+++.+-+.+--. +.+-=+++++.|+++.+|..+...++|.++++.|+.+.
T Consensus       236 ~~~~~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~  291 (302)
T TIGR00817       236 QVAFMLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY  291 (302)
T ss_pred             HHHHHHHccCCchHHHHH-hhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence            345578888887777666 46777888888887555566778899999999999763

specificities overlap.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=92.32  E-value=1.7  Score=33.64  Aligned_cols=78  Identities=18%  Similarity=0.110  Sum_probs=51.7

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHH----HHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccc------hhhHHHHHhh
Q 046747           14 ALLVIWQYTVPFLLNLSASATFF----AILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVG------FSLLGMASIV   83 (92)
Q Consensus        14 ~ll~n~~~~~p~~ln~~gS~~~~----~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~------~~~~G~~LI~   83 (92)
                      +.+.+|....=+++-....+...    -.|++.|-++.+|+.+..-=.++.+.|..+.+|....      .-..|+..++
T Consensus       205 ~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii  284 (300)
T PF05653_consen  205 NQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIII  284 (300)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence            34566665555544444555444    4678999999999975554455555666666666432      3367899999


Q ss_pred             hhheeeec
Q 046747           84 LGVWLCIN   91 (92)
Q Consensus        84 ~Gv~L~~~   91 (92)
                      .||++...
T Consensus       285 ~GV~lL~~  292 (300)
T PF05653_consen  285 IGVFLLSS  292 (300)
T ss_pred             Hhhheeec
Confidence            99998753

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=92.25  E-value=0.37  Score=38.16  Aligned_cols=56  Identities=16%  Similarity=0.176  Sum_probs=47.4

Q ss_pred             HHHHHhccCCceeehhhHHHHHHHHHHHHHHHh------hhccccchhhHHHHHhhhhheeee
Q 046747           34 TFFAILSHTPISLAVPVTNATTFAATAFFGLLL------GERTRVGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        34 ~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l------~e~~~~~~~~~G~~LI~~Gv~L~~   90 (92)
                      ++++.++..+-+.|-=+ +++.=+++++.++++      .+|..++++++|+++-++|+.++.
T Consensus        94 ~~~~gl~~tsa~~asll-~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~  155 (358)
T PLN00411         94 TGYIGIEYSNPTLASAI-SNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI  155 (358)
T ss_pred             HHHHHHhhccHHHHHHH-HHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence            57788999999999988 588888999988877      467778899999999999987653

>PRK13499 rhamnose-proton symporter; Provisional

Probab=91.90  E-value=0.37  Score=38.55  Aligned_cols=67  Identities=15%  Similarity=0.107  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccc-------cchhhHHHHHhhhhheeee
Q 046747           24 PFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTR-------VGFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        24 p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~-------~~~~~~G~~LI~~Gv~L~~   90 (92)
                      .-++-..|-+.++...+..-+|++.|+...++-+++.+.+.++..|-.       ..-..+|++++++|+.++.
T Consensus        79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s  152 (345)
T PRK13499         79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVG  152 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            344556778888899999999999999999999999999876433211       1346889999999998864

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=91.85  E-value=1.3  Score=29.43  Aligned_cols=54  Identities=15%  Similarity=0.275  Sum_probs=39.8

Q ss_pred             HHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747           34 TFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL   88 (92)
Q Consensus        34 ~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L   88 (92)
                      .-+..+++.. ++++=++|.+-=+++.+.++.+++|..+.++++|+++.+.|+.+
T Consensus        97 ~~f~~i~~tS-~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   97 SSFLLIKLTS-PLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHhhhcC-hhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            3345555543 23555667888888999998866666788899999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=91.21  E-value=0.74  Score=35.92  Aligned_cols=50  Identities=20%  Similarity=0.216  Sum_probs=37.0

Q ss_pred             HhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747           38 ILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL   88 (92)
Q Consensus        38 ~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L   88 (92)
                      .+++.+-..+ =++|.+-=+++.+.|+++.+|..+...++|.++++.|+.+
T Consensus       296 ~l~~~s~~t~-sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l  345 (350)
T PTZ00343        296 CLGKVNQVTH-AVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL  345 (350)
T ss_pred             HHhccchhHH-HHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence            5666643333 3446777788899998766666777889999999999975

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=89.32  E-value=1.9  Score=34.74  Aligned_cols=72  Identities=21%  Similarity=0.255  Sum_probs=59.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           17 VIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        17 ~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      -+.+..+|-++|.+==-+.|..+++-| ...|-++.=+--..|++...++-+++.++++|....+-++|+.+.
T Consensus        91 ~~lk~~vPa~iYalqNnl~yval~~ld-aatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~v  162 (345)
T KOG2234|consen   91 ETLKVSVPALIYALQNNLQYVALSNLD-AATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALV  162 (345)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhcCC-chhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            366899999999888889999999999 444555567888889998887666666878899999999999764

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=87.97  E-value=1.7  Score=30.10  Aligned_cols=71  Identities=18%  Similarity=0.202  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH--hhhcc--ccchhhHHHHHhhhhhee
Q 046747           18 IWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLL--LGERT--RVGFSLLGMASIVLGVWL   88 (92)
Q Consensus        18 n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~--l~e~~--~~~~~~~G~~LI~~Gv~L   88 (92)
                      +||+..|-++=..--..-.+..+|...+.+.=..-.=--+..++...+  ++.++  .+++|.+|.+++++|+.|
T Consensus        64 p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   64 PWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             ChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            566666665444444444455555444443333211122233333332  44344  567999999999999875

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=86.68  E-value=7.4  Score=29.37  Aligned_cols=78  Identities=9%  Similarity=0.120  Sum_probs=52.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHH----HHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhh
Q 046747           10 KNWLALLVIWQYTVPFLLNLS----ASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLG   85 (92)
Q Consensus        10 ~~~~~ll~n~~~~~p~~ln~~----gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~G   85 (92)
                      +.+-.....|..+...++|-+    |....++..++.+ ++..-++.++-=+++.+.+.+++.+..++..|.|.++++.|
T Consensus       213 ~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~-al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g  291 (303)
T PF08449_consen  213 SAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFS-ALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAG  291 (303)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHH
Confidence            344445566766666655544    3334445554443 44444556888889999887766666777889999999999


Q ss_pred             hee
Q 046747           86 VWL   88 (92)
Q Consensus        86 v~L   88 (92)
                      +.+
T Consensus       292 ~~~  294 (303)
T PF08449_consen  292 IFL  294 (303)
T ss_pred             HHH
Confidence            864

; GO: 0055085 transmembrane transport

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=83.30  E-value=2.7  Score=31.56  Aligned_cols=64  Identities=19%  Similarity=0.153  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHh
Q 046747           18 IWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASI   82 (92)
Q Consensus        18 n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI   82 (92)
                      |++.+++..++..|-++--+++++.| ++.==++++++-++|++.++.+++..++....+|..++
T Consensus       181 ~~~~~~~i~~~a~gGllva~v~Kyad-nI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  181 SWWVWIVIFLQAIGGLLVAFVLKYAD-NIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            67788888888889888888998888 45666778999999999999888888888878887653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=81.59  E-value=7.9  Score=30.75  Aligned_cols=72  Identities=11%  Similarity=0.017  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHH----HHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           17 VIWQYTVPFLLNLSASATFF----AILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        17 ~n~~~~~p~~ln~~gS~~~~----~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      -+++....++.|..+...++    +.+..++= ..+-+...++-..+++.+.+++++..++..++|.++|++|..+-
T Consensus       228 w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssA-t~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy  303 (334)
T PF06027_consen  228 WTSQVIGLLVGYALCLFLFYSLVPIVLRMSSA-TFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVY  303 (334)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHhCcc-ceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheE
Confidence            36666666666666655554    22322222 22333446677778888888777777888899999999999874

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=81.26  E-value=4.2  Score=32.60  Aligned_cols=54  Identities=17%  Similarity=0.209  Sum_probs=38.3

Q ss_pred             HHhccCCceeehh-----hHHHHHHHHHHHHHHHhhhcccc-----chhhHHHHHhhhhheeee
Q 046747           37 AILSHTPISLAVP-----VTNATTFAATAFFGLLLGERTRV-----GFSLLGMASIVLGVWLCI   90 (92)
Q Consensus        37 ~~L~~~dlSla~P-----~~nsl~fv~t~l~~~~l~e~~~~-----~~~~~G~~LI~~Gv~L~~   90 (92)
                      |.+++..+..+.|     +.|+++-++..+-|.+++|.+..     ...++|+++++.|..++.
T Consensus       277 y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~lkE~K~a~~k~~~~l~~G~vliI~g~~lig  340 (345)
T PRK13499        277 YAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLVLKEWKGASRRPVRVLSLGCVVIILAANIVG  340 (345)
T ss_pred             HHHHHHHcCCccchHHHHHhccHHHHHHHHhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHh
Confidence            5555555544444     66778878888888889998852     234889999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	92
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	99.22
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.12

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=99.22  E-value=2.7e-11  Score=80.10  Aligned_cols=73  Identities=12%  Similarity=0.134  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           17 VIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        17 ~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      ++|..+.....+..+..+|.+.+++.|+|.|||+-.+++++++++.|+++.+|..++++++|+.+|+.|+.+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l  101 (110)
T 3b5d_A           29 RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII  101 (110)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            3567788899999999999999999999999999559999999999998777777888899999999999764

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.12  E-value=7.1e-11  Score=81.52  Aligned_cols=73  Identities=12%  Similarity=0.134  Sum_probs=52.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747           17 VIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC   89 (92)
Q Consensus        17 ~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~   89 (92)
                      ++|.++.+.+.+..+..+|.+.+++.|+|.|||+-.+++.+++++.|+++.+|..++++++|+++|++|+.+.
T Consensus        29 ~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll  101 (137)
T 2i68_A           29 RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII  101 (137)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            3567789999999999999999999999999999449999999999988766776888899999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00