Citrus Sinensis ID: 046748
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 188 | ||||||
| 147808028 | 214 | hypothetical protein VITISV_019443 [Viti | 1.0 | 0.878 | 0.888 | 7e-98 | |
| 359481756 | 214 | PREDICTED: uncharacterized protein C17or | 1.0 | 0.878 | 0.882 | 1e-97 | |
| 356504254 | 216 | PREDICTED: uncharacterized protein C17or | 1.0 | 0.870 | 0.868 | 5e-94 | |
| 356496068 | 216 | PREDICTED: uncharacterized protein C17or | 1.0 | 0.870 | 0.863 | 2e-93 | |
| 388505470 | 216 | unknown [Medicago truncatula] | 1.0 | 0.870 | 0.857 | 4e-93 | |
| 449448610 | 213 | PREDICTED: glucose-induced degradation p | 0.994 | 0.877 | 0.851 | 4e-92 | |
| 357469127 | 220 | FHY1 [Medicago truncatula] gi|355505903| | 1.0 | 0.854 | 0.840 | 2e-91 | |
| 224140287 | 225 | predicted protein [Populus trichocarpa] | 1.0 | 0.835 | 0.814 | 2e-91 | |
| 388515565 | 215 | unknown [Lotus japonicus] | 1.0 | 0.874 | 0.851 | 3e-91 | |
| 145360726 | 215 | uncharacterized protein [Arabidopsis tha | 1.0 | 0.874 | 0.830 | 1e-89 |
| >gi|147808028|emb|CAN77671.1| hypothetical protein VITISV_019443 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 361 bits (927), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 167/188 (88%), Positives = 181/188 (96%)
Query: 1 MPVRVAESSAPSQVSGAHSEESSPPICSLLTVGQAFSGTQNVSNLQKEEAWRVNVRIQGC 60
MPVRV E+SAPSQVSGA+ +SPP C+LL+VGQAFSGTQNVS+LQK+EAWRVNVRIQGC
Sbjct: 1 MPVRVVENSAPSQVSGANPGHTSPPACTLLSVGQAFSGTQNVSSLQKDEAWRVNVRIQGC 60
Query: 61 DLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEATPEDDIRHWTKFPS 120
DL+HGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTF+TGKWEA+PEDDIRHWTKFPS
Sbjct: 61 DLDHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFFTGKWEASPEDDIRHWTKFPS 120
Query: 121 FAPLLSRVEADGGKSLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSIN 180
F+PL+ +VEADGGKSLDLSNY YIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSC+DGSIN
Sbjct: 121 FSPLVGQVEADGGKSLDLSNYQYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCNDGSIN 180
Query: 181 GFYYDPNS 188
GFYYDPNS
Sbjct: 181 GFYYDPNS 188
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481756|ref|XP_002271005.2| PREDICTED: uncharacterized protein C17orf39 homolog [Vitis vinifera] gi|297740335|emb|CBI30517.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356504254|ref|XP_003520912.1| PREDICTED: uncharacterized protein C17orf39 homolog [Glycine max] | Back alignment and taxonomy information |
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| >gi|356496068|ref|XP_003516892.1| PREDICTED: uncharacterized protein C17orf39 homolog [Glycine max] | Back alignment and taxonomy information |
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| >gi|388505470|gb|AFK40801.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449448610|ref|XP_004142059.1| PREDICTED: glucose-induced degradation protein 4 homolog [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357469127|ref|XP_003604848.1| FHY1 [Medicago truncatula] gi|355505903|gb|AES87045.1| FHY1 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|224140287|ref|XP_002323514.1| predicted protein [Populus trichocarpa] gi|222868144|gb|EEF05275.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|388515565|gb|AFK45844.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|145360726|ref|NP_181304.2| uncharacterized protein [Arabidopsis thaliana] gi|297827323|ref|XP_002881544.1| far-red elongated hypocotyl 1 [Arabidopsis lyrata subsp. lyrata] gi|297327383|gb|EFH57803.1| far-red elongated hypocotyl 1 [Arabidopsis lyrata subsp. lyrata] gi|330254340|gb|AEC09434.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 188 | ||||||
| TAIR|locus:2040761 | 215 | AT2G37680 [Arabidopsis thalian | 1.0 | 0.874 | 0.830 | 2e-86 | |
| MGI|MGI:1914021 | 217 | Gid4 "GID complex subunit 4, V | 0.968 | 0.838 | 0.356 | 3.3e-24 | |
| ASPGD|ASPL0000058945 | 287 | AN1179 [Emericella nidulans (t | 0.957 | 0.627 | 0.316 | 4.8e-23 | |
| UNIPROTKB|G4MMI8 | 383 | MGG_06858 "Uncharacterized pro | 0.829 | 0.407 | 0.343 | 9.3e-21 | |
| DICTYBASE|DDB_G0284149 | 232 | DDB_G0284149 "unknown" [Dictyo | 0.797 | 0.646 | 0.368 | 1.7e-20 | |
| ASPGD|ASPL0000009703 | 552 | AN4074 [Emericella nidulans (t | 0.909 | 0.309 | 0.335 | 4.2e-16 | |
| POMBASE|SPAP8A3.13c | 547 | SPAP8A3.13c "Vid24 family prot | 0.813 | 0.279 | 0.333 | 1.4e-15 | |
| POMBASE|SPAC3H1.14 | 195 | SPAC3H1.14 "cytoplasmic vesicl | 0.813 | 0.784 | 0.305 | 7.1e-13 | |
| SGD|S000000309 | 362 | VID24 "GID Complex regulatory | 0.313 | 0.162 | 0.353 | 3.5e-07 | |
| SGD|S000003298 | 292 | YGR066C "Putative protein of u | 0.430 | 0.277 | 0.329 | 7.2e-06 |
| TAIR|locus:2040761 AT2G37680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
Identities = 157/189 (83%), Positives = 169/189 (89%)
Query: 1 MPVRVAESSAPSQVSGAHSEESSP-PICSLLTVGQAFSGTQNVSNLQKEEAWRVNVRIQG 59
MPVRV ES+ P+QVSG SP P SLL GQAFSGTQNVSN QKEEAWRVNV+IQG
Sbjct: 1 MPVRVVESNTPAQVSGTDPGNRSPLPPSSLLGAGQAFSGTQNVSNQQKEEAWRVNVQIQG 60
Query: 60 CDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEATPEDDIRHWTKFP 119
DLEHGYLCGTMEALNVPMADTPV+TFWEGEIVD KNYTFYTGKWEAT EDD+RHW+KFP
Sbjct: 61 IDLEHGYLCGTMEALNVPMADTPVITFWEGEIVDGKNYTFYTGKWEATREDDMRHWSKFP 120
Query: 120 SFAPLLSRVEADGGKSLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSI 179
SF+PL +VE+DGG+ LDL+NYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSI
Sbjct: 121 SFSPLQGQVESDGGRQLDLNNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSI 180
Query: 180 NGFYYDPNS 188
+GFYYDPNS
Sbjct: 181 SGFYYDPNS 189
|
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| MGI|MGI:1914021 Gid4 "GID complex subunit 4, VID24 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000058945 AN1179 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G4MMI8 MGG_06858 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0284149 DDB_G0284149 "unknown" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000009703 AN4074 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| POMBASE|SPAP8A3.13c SPAP8A3.13c "Vid24 family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| POMBASE|SPAC3H1.14 SPAC3H1.14 "cytoplasmic vesicle protein, Vid24 family (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| SGD|S000000309 VID24 "GID Complex regulatory subunit" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
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| SGD|S000003298 YGR066C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 188 | |||
| pfam09783 | 176 | pfam09783, Vac_ImportDeg, Vacuolar import and degr | 6e-72 | |
| COG5073 | 272 | COG5073, VID24, Vacuolar import and degradation pr | 4e-29 |
| >gnl|CDD|220399 pfam09783, Vac_ImportDeg, Vacuolar import and degradation protein | Back alignment and domain information |
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Score = 214 bits (548), Expect = 6e-72
Identities = 71/168 (42%), Positives = 93/168 (55%), Gaps = 12/168 (7%)
Query: 28 SLLTVGQAFSGTQNVSNLQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFW 87
S L G F GTQ K E ++V V I+ DL +LCG +E + + TF+
Sbjct: 1 SYLRPGSRFRGTQLS----KYEKYQVEVTIKTVDLPDSHLCGYLEIKGLTDQHPELTTFF 56
Query: 88 EGEIVDAKNYTFYTGKWEATPEDDIRHWTKFPSFAPL----LSRVEADGGKSLDLSNYPY 143
EGEI+ YTF T KW A+ E D+ HW +FP+F PL + + + K DL N +
Sbjct: 57 EGEIIG-NKYTFLTEKWGASEEIDLEHWKRFPAFKPLTKQTMRNLISRDYKHYDLLNQDF 115
Query: 144 IFMRWKEQYFVN---VGTDCGLTIAGFYYVCFSCSDGSINGFYYDPNS 188
IFMRWKEQ+ V V + G + GFYY+CF S GSI G+YY PNS
Sbjct: 116 IFMRWKEQFLVPDHRVKSISGASFEGFYYICFDQSTGSIQGYYYHPNS 163
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Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole. Length = 176 |
| >gnl|CDD|227405 COG5073, VID24, Vacuolar import and degradation protein [Intracellular trafficking and secretion] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 188 | |||
| PF09783 | 176 | Vac_ImportDeg: Vacuolar import and degradation pro | 100.0 | |
| KOG4635 | 274 | consensus Vacuolar import and degradation protein | 100.0 | |
| COG5073 | 272 | VID24 Vacuolar import and degradation protein [Int | 100.0 | |
| KOG4635 | 274 | consensus Vacuolar import and degradation protein | 99.52 |
| >PF09783 Vac_ImportDeg: Vacuolar import and degradation protein; InterPro: IPR018618 Members of this family are involved in the negative regulation of gluconeogenesis | Back alignment and domain information |
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Probab=100.00 E-value=3.9e-78 Score=499.03 Aligned_cols=157 Identities=43% Similarity=0.778 Sum_probs=148.7
Q ss_pred CCCCCCCeeeeEeecCCCCCCCceEEEEEEeeecCCCceeEEEEEEecCCCCCCCeeeeEeEEEecCCCCceeeCCCCCC
Q 046748 28 SLLTVGQAFSGTQNVSNLQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEAT 107 (188)
Q Consensus 28 s~L~pGs~F~G~Q~ss~~~k~~~y~V~V~I~~VDl~~~~L~G~l~i~gLt~~~~~iTTfFEGEII~~k~~~F~T~~W~A~ 107 (188)
|||+||++|+|+|+| ++++|+|+|+|++|||++++|||+|+|+|||+++|+|||||||||||+++|+|+|++|+|+
T Consensus 1 ~~L~pg~~F~G~Q~S----~~~~y~V~V~i~~VDl~~~~l~G~l~i~glt~~~p~itTfFeGEII~~~~~~F~T~~W~a~ 76 (176)
T PF09783_consen 1 SYLRPGSRFVGTQQS----GREKYPVKVTIKTVDLPNSHLCGYLEIKGLTDDHPEITTFFEGEIIGFNKHSFLTEKWGAN 76 (176)
T ss_pred CcccCCCEEEeEecC----CCcceEEEEEEEEecCCcCEEEEEEEEecCCCCCCcEEEEEeeEEecCCCCceeccccCCC
Confidence 699999999999996 4899999999999999999999999999999999999999999999977899999999999
Q ss_pred ccchHhhhcCCCCChhchhhhhc----CCCcccccCCCCeeeeeeeeeeeeec---CCCCCceeeeeEEEEEeccCCeEE
Q 046748 108 PEDDIRHWTKFPSFAPLLSRVEA----DGGKSLDLSNYPYIFMRWKEQYFVNV---GTDCGLTIAGFYYVCFSCSDGSIN 180 (188)
Q Consensus 108 ~~~D~~HW~kf~~F~~l~~~~~~----d~~~~~~~~~~~~IfMRWKE~Flv~~---~~i~GASf~GFYYIc~~~~~G~I~ 180 (188)
+++|++||+|||||+++..+... +.....+++|++||||||||+||||+ ++|+||||||||||||||++|+|+
T Consensus 77 ~~~D~~hW~kf~~f~~~~~~~~~~~~~~~~~~~~~~~~~~IfMRWKE~Flvpd~~~~~i~GaSf~GFYYI~~~~~~G~I~ 156 (176)
T PF09783_consen 77 EEIDLEHWSKFPPFRPLSKDENLQKLSDDFDYEDLLNQRYIFMRWKERFLVPDHRVKSISGASFEGFYYICLDRSTGSIE 156 (176)
T ss_pred cchhhHHHhcCCcchhhhhhhccccccCCccchhhcCCCcEEEEEEeEEEcccccCCCcCceeEeeEEEEEEEccCCeEE
Confidence 99999999999999999887766 55566788899999999999999998 689999999999999999999999
Q ss_pred EEeeCCCC
Q 046748 181 GFYYDPNS 188 (188)
Q Consensus 181 G~Yyh~~S 188 (188)
||||||+|
T Consensus 157 G~Yyh~~s 164 (176)
T PF09783_consen 157 GYYYHPNS 164 (176)
T ss_pred EEEECCCC
Confidence 99999987
|
They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [, ]. |
| >KOG4635 consensus Vacuolar import and degradation protein [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
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| >COG5073 VID24 Vacuolar import and degradation protein [Intracellular trafficking and secretion] | Back alignment and domain information |
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| >KOG4635 consensus Vacuolar import and degradation protein [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00