Citrus Sinensis ID: 046773
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FKH1 | 446 | Transcriptional regulator | yes | no | 0.947 | 0.961 | 0.605 | 1e-144 |
| >sp|Q9FKH1|SAP_ARATH Transcriptional regulator STERILE APETALA OS=Arabidopsis thaliana GN=SAP PE=1 SV=1 | Back alignment and function desciption |
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Score = 513 bits (1321), Expect = e-144, Method: Compositional matrix adjust.
Identities = 275/454 (60%), Positives = 335/454 (73%), Gaps = 25/454 (5%)
Query: 7 NGSGGVGGHYGARRGGDFEGPSSSRQRRRAVNEVWPEPFVEALAAQVAIEASRSVGRLAA 66
NG+GG GG FE PS SR RR A N+VWPEPF+E+LA QVA+ AS S G LAA
Sbjct: 10 NGAGG--------SGGVFEAPSPSRPRRGA-NDVWPEPFLESLAVQVAVNASTSAGLLAA 60
Query: 67 AAALANVFQVCSTWRAVSRSDLLWHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRR 126
A ALANVF+VC+TW AVSRSD LW L+R++W RT+L+H TWRDE+IYRHRTA+NFRTR
Sbjct: 61 APALANVFRVCTTWHAVSRSDHLWQLLSRQVWARTHLMHDTWRDEFIYRHRTARNFRTRT 120
Query: 127 YTHFNLYFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSD 186
+T+F L FDPSDVD PD L+CRCLTLSDLYLA GFADG VRLF L RLHVRT RP D
Sbjct: 121 HTYFTLQFDPSDVDEPDSLSCRCLTLSDLYLAAGFADGTVRLFLLNNRLHVRTLRPPLRD 180
Query: 187 RLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGC 246
R G+FSRAVSGI+I+DS+L FAT+DGDIHVA ID V + TRTA+ G +++DG L+DFTGC
Sbjct: 181 RFGRFSRAVSGIVISDSRLTFATMDGDIHVAEIDGVGH-TRTAYAGDIVNDGALVDFTGC 239
Query: 247 SRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH 305
R+WVGL+AG+ GRAFHIWD +EE FVGG LTD VMGW LTE T +GR+R++ +
Sbjct: 240 GRWWVGLFAGVPGRAFHIWDCNSEETTFVGGTLTDPEAVMGWHTLTELTTSLGRLRISGN 299
Query: 306 ESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRL 364
E+AVACT R++ DLRNQG+++GE RGL VT D N EAY+ +++R
Sbjct: 300 ETAVACTRWRIMVIDLRNQGVIIGEDEEQRRGLIVTGFDANDEAYVRLDSRG-------N 352
Query: 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERI 424
A VRRV+T + VC F + VMGC+N+ +ALMC G++RVWEVE GEY+YS RER+
Sbjct: 353 ASVRRVNTQQTVCEFRVSGAAQRRVMGCVNRLHALMCAGGIMRVWEVERGEYLYSIRERV 412
Query: 425 GEEVIAFVGDDRHVAASCGTN-----IHLWDFGA 453
G EV A V DDRHVA + ++ IHLWDFGA
Sbjct: 413 G-EVDAIVADDRHVAVASASSTAQSIIHLWDFGA 445
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Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | ||||||
| 224131854 | 459 | predicted protein [Populus trichocarpa] | 0.938 | 0.925 | 0.667 | 1e-158 | |
| 449444616 | 446 | PREDICTED: transcriptional regulator STE | 0.929 | 0.943 | 0.638 | 1e-148 | |
| 255578723 | 447 | Transcriptional regulator STERILE APETAL | 0.920 | 0.932 | 0.619 | 1e-145 | |
| 225447555 | 460 | PREDICTED: transcriptional regulator STE | 0.931 | 0.917 | 0.615 | 1e-144 | |
| 15238607 | 446 | transcriptional regulator STERILE APETAL | 0.947 | 0.961 | 0.605 | 1e-143 | |
| 4033856 | 446 | sterile apetala [Arabidopsis thaliana] | 0.947 | 0.961 | 0.605 | 1e-142 | |
| 297805128 | 449 | predicted protein [Arabidopsis lyrata su | 0.927 | 0.935 | 0.615 | 1e-142 | |
| 449528061 | 376 | PREDICTED: transcriptional regulator STE | 0.816 | 0.984 | 0.625 | 1e-124 | |
| 356499483 | 474 | PREDICTED: transcriptional regulator STE | 0.927 | 0.886 | 0.522 | 1e-108 | |
| 356553464 | 477 | PREDICTED: transcriptional regulator STE | 0.933 | 0.886 | 0.534 | 1e-108 |
| >gi|224131854|ref|XP_002321195.1| predicted protein [Populus trichocarpa] gi|222861968|gb|EEE99510.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 299/448 (66%), Positives = 342/448 (76%), Gaps = 23/448 (5%)
Query: 16 YGARRGGDFEGPSSSRQRRRAVNEVWPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQ 75
YGARR G++EGPS R R RA+NEVWPEPF+EALAAQVAI+ASR VGRL AA ALANVFQ
Sbjct: 24 YGARRAGEYEGPS--RSRPRAINEVWPEPFLEALAAQVAIDASRLVGRLVAAQALANVFQ 81
Query: 76 VCSTWRAVSRSDLLWHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFD 135
VCSTWRAVSRSD LWHRLTR IWGRTNL H TWR+EYIYRH+TAQNFR+ R HF L+FD
Sbjct: 82 VCSTWRAVSRSDPLWHRLTRGIWGRTNLFHDTWREEYIYRHQTAQNFRSGRAVHFALHFD 141
Query: 136 PSDVD---NPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFS 192
P+DVD +PD L CRCL SD YLACGFADGAVRLFDLTTRLH RTFRP+H DRLG+FS
Sbjct: 142 PADVDDPNDPDALICRCLAFSDRYLACGFADGAVRLFDLTTRLHARTFRPEHHDRLGRFS 201
Query: 193 RAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVG 252
RAVSGI+IT ++L+FATLDGDIHVA ++ AN R A G V++DG L+DFTG R+WVG
Sbjct: 202 RAVSGIVITATRLVFATLDGDIHVAAVNSNAN-PRRARLGEVLNDGALVDFTGRGRWWVG 260
Query: 253 LYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVAC 311
LYAGL GRA+ +WD EE +F GG LTD V+GW LTE TEFVGRVRVTS ES VAC
Sbjct: 261 LYAGLPGRAYRVWDGNTEEPLFEGGALTDPEAVLGWHTLTEVTEFVGRVRVTSQESVVAC 320
Query: 312 TSSRVITFDLRNQGMVLGERGYG--RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRR 369
TSSR++ FDL + G VL E Y RG+ V S DV EAY++V+ R A VRR
Sbjct: 321 TSSRLVIFDLGDLGAVLREEDYTNRRGILVGSFDVCNEAYVIVDGRG-------NASVRR 373
Query: 370 VDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGG---EYMYSFRERIGE 426
DT EE+C F++R R V+GCMN GY L C GV+RVW++E EY+YSFRERIG
Sbjct: 374 ADTSEEMCGFTVRPPR--GVLGCMNGGYVLTCAGGVVRVWQIEQPGRQEYLYSFRERIG- 430
Query: 427 EVIAFVGDDRHV-AASCGTNIHLWDFGA 453
EV A V D+RHV AAS TNIHLWDFGA
Sbjct: 431 EVNALVADERHVAAASSDTNIHLWDFGA 458
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444616|ref|XP_004140070.1| PREDICTED: transcriptional regulator STERILE APETALA-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 279/437 (63%), Positives = 330/437 (75%), Gaps = 16/437 (3%)
Query: 23 DFEGPSSSRQRRRAVNEVWPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRA 82
DF+GPSSSR RR NE+WPEPF+EALA QVAI+ASRS+GR+ AAAAL+NVFQVCSTWR
Sbjct: 20 DFDGPSSSR--RRGANEIWPEPFIEALATQVAIDASRSLGRIHAAAALSNVFQVCSTWRV 77
Query: 83 VSRSDLLWHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNP 142
VSRS+LLWHRLT RIWGRT L TWRDEY+Y H A+NFRT R H L +D SDVD P
Sbjct: 78 VSRSELLWHRLTTRIWGRTYRLLDTWRDEYVYWHTIARNFRTGRSLHTVLRYDQSDVDEP 137
Query: 143 DGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGI-IIT 201
DGL CRCL +S +LACGFADG VRLFDL TRLH+ TFRP H DRLGQFSRAVSGI II
Sbjct: 138 DGLMCRCLAISLRHLACGFADGTVRLFDLATRLHITTFRPHHRDRLGQFSRAVSGIVIIA 197
Query: 202 DSQLIFATLDGDIHVAVI--DDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLA 258
D++L+FA++DGDIHV +I + VA + TR H G+VM+DGVL+DF GC R+WVGLYAG+
Sbjct: 198 DARLVFASIDGDIHVGIIAPNPVAISPTRRVHEGNVMNDGVLVDFAGCDRWWVGLYAGVP 257
Query: 259 GRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVI 317
GRAFHIWD +EE VFVGG LTD +V GW ML E TE VGRVRV++ ESAVACTS +++
Sbjct: 258 GRAFHIWDGNSEELVFVGGSLTDPESVTGWHMLAELTEQVGRVRVSNQESAVACTSLQLM 317
Query: 318 TFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC 377
DLRNQ +VL E G VTS+DV+ E YIVV+ +AIVRRVDT EEVC
Sbjct: 318 VLDLRNQEVVLNEEENGVVRIVTSMDVSNETYIVVDGNG-------VAIVRRVDTMEEVC 370
Query: 378 RFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRH 437
F++R + V+GC+N GYA+M G IRVW++E G+YM FRERIG A V +DR+
Sbjct: 371 TFTVRGAADRGVVGCINMGYAVMSSGGTIRVWDIEHGQYMCRFRERIG-AANAIVANDRY 429
Query: 438 VAASC-GTNIHLWDFGA 453
VAAS T +HLWDFGA
Sbjct: 430 VAASAFDTTLHLWDFGA 446
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578723|ref|XP_002530220.1| Transcriptional regulator STERILE APETALA, putative [Ricinus communis] gi|223530267|gb|EEF32167.1| Transcriptional regulator STERILE APETALA, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 272/439 (61%), Positives = 330/439 (75%), Gaps = 22/439 (5%)
Query: 23 DFEGPSSSRQRRRAVNEVWPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRA 82
++EGP R R RA+NEVWPEPF+EALAAQVAI+ASR VGRLAAA ALANVFQVCSTWRA
Sbjct: 23 EYEGPP--RIRPRAINEVWPEPFLEALAAQVAIDASRFVGRLAAAQALANVFQVCSTWRA 80
Query: 83 VSRSDLLWHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVD-- 140
VSRSDLLWHRLTRRIW RT L+ TWR+EYIYRHRTA+NFRTR +HF L FDP+D D
Sbjct: 81 VSRSDLLWHRLTRRIWNRTTLIQDTWREEYIYRHRTARNFRTRTSSHFTLQFDPADFDDP 140
Query: 141 -NPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII 199
+PD L CRCL LSD YLACGF DGA+RL+DL TRLH RTFRPQH D +G+FSRAVSGII
Sbjct: 141 NDPDALICRCLALSDHYLACGFVDGAIRLYDLQTRLHTRTFRPQHRDHMGRFSRAVSGII 200
Query: 200 ITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG 259
I++ +L+FA+L+GDIH+A+++ A R H+G ++ DGVLIDF G ++WVGLY G+ G
Sbjct: 201 ISNRRLVFASLNGDIHLAMLNGNAFPRRV-HYGDMLTDGVLIDFAGRGQWWVGLYVGVPG 259
Query: 260 RAFHIWDRQAEEV-FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVIT 318
RAFHIW+ EE+ FVGG LTD ++V GW ML + TE +GRVRVTS +A+ACT V++
Sbjct: 260 RAFHIWNGTTEELTFVGGLLTDPDSVTGWHMLNDITELLGRVRVTSEATAIACTRLSVMS 319
Query: 319 FDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF--EEV 376
FDLRNQG++LGE G G V+ DV AY+ V++ +A V R D EE+
Sbjct: 320 FDLRNQGVILGEDDRG-GFMVSCFDVYNSAYVSVDSSG-------VARVHRADNIGGEEI 371
Query: 377 CRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEG-GEYMYSFRERIGEEVIAFVGDD 435
C F++R R +MGCMN GYALMC GV+R+WE+E GE +YSFRERIG EV A D+
Sbjct: 372 CSFNVRVQR--GMMGCMNGGYALMCAGGVVRIWEIEQRGELLYSFRERIG-EVNAMAADE 428
Query: 436 RHV-AASCGTNIHLWDFGA 453
RHV AAS IH+WDFGA
Sbjct: 429 RHVAAASSEGTIHVWDFGA 447
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447555|ref|XP_002269014.1| PREDICTED: transcriptional regulator STERILE APETALA [Vitis vinifera] gi|296085021|emb|CBI28436.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 271/440 (61%), Positives = 317/440 (72%), Gaps = 18/440 (4%)
Query: 23 DFEGPSSSRQRRRAVNEVWPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRA 82
DFEGPSSSR RR+ N VWPEPFVEALA+QVAI+ASRS+GRLAAA ALANVFQVCSTWRA
Sbjct: 29 DFEGPSSSR--RRSGNGVWPEPFVEALASQVAIDASRSIGRLAAAPALANVFQVCSTWRA 86
Query: 83 VSRSDLLWHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDN- 141
VSRSDLLW L RRIWGR LH TWR+E+IYRHRTA NFR RRY + L FDP+ V +
Sbjct: 87 VSRSDLLWRNLCRRIWGRARRLHDTWREEFIYRHRTAMNFRNRRYNYTTLDFDPAYVSSG 146
Query: 142 -PDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII 200
L+CRCL LSD +LA GF DG VRLFDL TRLHV T P H+ +G FSRAVSGII+
Sbjct: 147 TATALSCRCLALSDFHLAVGFEDGTVRLFDLATRLHVSTCLPHHNVLMGPFSRAVSGIIL 206
Query: 201 TDSQLIFATLDGDIHVAVIDDVAN-----ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYA 255
+ ++L+FA+L GD++VA +D VA TR H G DG L+DF GCSR+WVGLYA
Sbjct: 207 SRARLVFASLHGDVNVAALDIVAPLDPVIPTRHVHLGQGASDGALVDFAGCSRWWVGLYA 266
Query: 256 GLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSS 314
G G+AF IWD + EE VFVGG LTD VMGW M TE +FVGRVRVTS ESAVACTS
Sbjct: 267 GAPGQAFRIWDGETEELVFVGGTLTDPEAVMGWHMFTELADFVGRVRVTSQESAVACTSR 326
Query: 315 RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE 374
RVI F+LRN G V GE+ + G V S+D N EAY++V+ R +A VRR + E
Sbjct: 327 RVIVFNLRNGGNVHGEQEFAPGFIVGSLDANNEAYVIVDGRG-------VASVRRAENLE 379
Query: 375 EVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVIAFVGD 434
EVCRF + V+GCMN GYALMC+ VIR WEVE G Y+Y+ RER +++A V D
Sbjct: 380 EVCRFVVGGTSQRRVLGCMNGGYALMCIGSVIRAWEVERGVYLYNLRERTLGDLVAMVAD 439
Query: 435 DRHVAA-SCGTNIHLWDFGA 453
DR+VAA + T IHLWDFGA
Sbjct: 440 DRYVAACNSDTTIHLWDFGA 459
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238607|ref|NP_198426.1| transcriptional regulator STERILE APETALA [Arabidopsis thaliana] gi|30580503|sp|Q9FKH1.1|SAP_ARATH RecName: Full=Transcriptional regulator STERILE APETALA gi|9758652|dbj|BAB09276.1| sterile apetala [Arabidopsis thaliana] gi|332006634|gb|AED94017.1| transcriptional regulator STERILE APETALA [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 275/454 (60%), Positives = 335/454 (73%), Gaps = 25/454 (5%)
Query: 7 NGSGGVGGHYGARRGGDFEGPSSSRQRRRAVNEVWPEPFVEALAAQVAIEASRSVGRLAA 66
NG+GG GG FE PS SR RR A N+VWPEPF+E+LA QVA+ AS S G LAA
Sbjct: 10 NGAGG--------SGGVFEAPSPSRPRRGA-NDVWPEPFLESLAVQVAVNASTSAGLLAA 60
Query: 67 AAALANVFQVCSTWRAVSRSDLLWHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRR 126
A ALANVF+VC+TW AVSRSD LW L+R++W RT+L+H TWRDE+IYRHRTA+NFRTR
Sbjct: 61 APALANVFRVCTTWHAVSRSDHLWQLLSRQVWARTHLMHDTWRDEFIYRHRTARNFRTRT 120
Query: 127 YTHFNLYFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSD 186
+T+F L FDPSDVD PD L+CRCLTLSDLYLA GFADG VRLF L RLHVRT RP D
Sbjct: 121 HTYFTLQFDPSDVDEPDSLSCRCLTLSDLYLAAGFADGTVRLFLLNNRLHVRTLRPPLRD 180
Query: 187 RLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGC 246
R G+FSRAVSGI+I+DS+L FAT+DGDIHVA ID V + TRTA+ G +++DG L+DFTGC
Sbjct: 181 RFGRFSRAVSGIVISDSRLTFATMDGDIHVAEIDGVGH-TRTAYAGDIVNDGALVDFTGC 239
Query: 247 SRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH 305
R+WVGL+AG+ GRAFHIWD +EE FVGG LTD VMGW LTE T +GR+R++ +
Sbjct: 240 GRWWVGLFAGVPGRAFHIWDCNSEETTFVGGTLTDPEAVMGWHTLTELTTSLGRLRISGN 299
Query: 306 ESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRL 364
E+AVACT R++ DLRNQG+++GE RGL VT D N EAY+ +++R
Sbjct: 300 ETAVACTRWRIMVIDLRNQGVIIGEDEEQRRGLIVTGFDANDEAYVRLDSRG-------N 352
Query: 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERI 424
A VRRV+T + VC F + VMGC+N+ +ALMC G++RVWEVE GEY+YS RER+
Sbjct: 353 ASVRRVNTQQTVCEFRVSGAAQRRVMGCVNRLHALMCAGGIMRVWEVERGEYLYSIRERV 412
Query: 425 GEEVIAFVGDDRHVAASCGTN-----IHLWDFGA 453
G EV A V DDRHVA + ++ IHLWDFGA
Sbjct: 413 G-EVDAIVADDRHVAVASASSTAQSIIHLWDFGA 445
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4033856|emb|CAA11128.1| sterile apetala [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 275/454 (60%), Positives = 335/454 (73%), Gaps = 25/454 (5%)
Query: 7 NGSGGVGGHYGARRGGDFEGPSSSRQRRRAVNEVWPEPFVEALAAQVAIEASRSVGRLAA 66
NG+GG GG FE PS SR RR A N+VWPEPF+E+LA QVA+ AS S G LAA
Sbjct: 10 NGAGG--------SGGVFEAPSPSRPRRGA-NDVWPEPFLESLAVQVAVNASTSAGLLAA 60
Query: 67 AAALANVFQVCSTWRAVSRSDLLWHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRR 126
A ALANVF+VC+TW AVSRSD LW L+R++W RT+L+H TWRDE+IYRHRTA+NFRTR
Sbjct: 61 APALANVFRVCTTWLAVSRSDHLWQLLSRQVWARTHLMHDTWRDEFIYRHRTARNFRTRT 120
Query: 127 YTHFNLYFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSD 186
+T+F L FDPSDVD PD L+CRCLTLSDLYLA GFADG VRLF L RLHVRT RP D
Sbjct: 121 HTYFTLQFDPSDVDEPDSLSCRCLTLSDLYLAGGFADGTVRLFLLNNRLHVRTLRPPLRD 180
Query: 187 RLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGC 246
R G+FSRAVSGI+I+DS+L FAT+DGDIHVA ID V + TRTA+ G +++DG L+DFTGC
Sbjct: 181 RFGRFSRAVSGIVISDSRLTFATMDGDIHVAEIDGVGH-TRTAYAGDIVNDGALVDFTGC 239
Query: 247 SRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH 305
R+WVGL+AG+ GRAFHIWD +EE FVGG LTD VMGW LTE T +GR+R++ +
Sbjct: 240 GRWWVGLFAGVPGRAFHIWDCNSEETTFVGGTLTDPEAVMGWHTLTELTTSLGRLRISGN 299
Query: 306 ESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRL 364
E+AVACT R++ DLRNQG+++GE RGL VT D N EAY+ +++R
Sbjct: 300 ETAVACTRWRIMVIDLRNQGVIIGEDEEPRRGLIVTGFDANDEAYVRLDSRG-------N 352
Query: 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERI 424
A VRRV+T + VC F + VMGC+N+ +ALMC G++RVWEVE GEY+YS RER+
Sbjct: 353 ASVRRVNTQQTVCEFRVSGAAQRRVMGCVNRLHALMCAGGIMRVWEVERGEYLYSIRERV 412
Query: 425 GEEVIAFVGDDRHVAASCGTN-----IHLWDFGA 453
G EV A V DDRHVA + ++ IHLWDFGA
Sbjct: 413 G-EVDAIVADDRHVAVASASSTAQSIIHLWDFGA 445
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805128|ref|XP_002870448.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316284|gb|EFH46707.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 269/437 (61%), Positives = 330/437 (75%), Gaps = 17/437 (3%)
Query: 24 FEGPSSSRQRRRAVNEVWPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAV 83
FE PS SR RR A N+VWPEPF+E+LA QVA+ AS S G LA+A ALANVF+VC+TW+AV
Sbjct: 22 FEAPSPSRPRRGA-NDVWPEPFLESLAVQVAVNASSSSGLLASAPALANVFRVCTTWQAV 80
Query: 84 SRSDLLWHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPD 143
SRSD LW L+R++W RT+L+H TWRDE+IYRHRTA+NFRTR +T+F L FDPSDVD PD
Sbjct: 81 SRSDHLWQLLSRQVWARTHLMHDTWRDEFIYRHRTARNFRTRTHTYFTLQFDPSDVDEPD 140
Query: 144 GLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS 203
L+CRCLTLSDLYLA GFADG VRLF L +RLHVRT RP DR G+FSRAVSGI I+DS
Sbjct: 141 SLSCRCLTLSDLYLAAGFADGTVRLFLLNSRLHVRTLRPPLRDRFGRFSRAVSGIFISDS 200
Query: 204 QLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFH 263
+L FAT+DGDIHVA ID V + TRTA+ G +++DG L+DFTGC R+WVGL+AG+ GRAFH
Sbjct: 201 RLTFATMDGDIHVAEIDGVGH-TRTAYAGDIVNDGALVDFTGCGRWWVGLFAGVPGRAFH 259
Query: 264 IWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLR 322
IWD +EE FVGG LTD VMGW LTE T +GR+R++ +E+AVACT R++ DLR
Sbjct: 260 IWDCNSEETTFVGGSLTDPEAVMGWHTLTELTTSLGRLRISGNETAVACTRWRIMVIDLR 319
Query: 323 NQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSL 381
NQG+++GE RGL VT D N EAY+ +++R N R VRRV+T + VC F +
Sbjct: 320 NQGVIIGEDEEQRRGLIVTGFDANDEAYLRMDSR----GNAR---VRRVNTLQTVCEFRV 372
Query: 382 RADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS 441
VMGC+N+ +ALMC G++RVWEVE GEY+YS RER+G EV A V DDRHVA +
Sbjct: 373 SGAAQRRVMGCVNRLHALMCAGGIMRVWEVERGEYLYSIRERVG-EVDAIVADDRHVAVA 431
Query: 442 CGTN-----IHLWDFGA 453
++ IHLWDFGA
Sbjct: 432 SSSSTAQSIIHLWDFGA 448
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449528061|ref|XP_004171025.1| PREDICTED: transcriptional regulator STERILE APETALA-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/384 (62%), Positives = 284/384 (73%), Gaps = 14/384 (3%)
Query: 76 VCSTWRAVSRSDLLWHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFD 135
VCSTWRAVSRS+LLWHRLT RIWGRT L TWRDEY+Y H A+NFRT R H L +D
Sbjct: 1 VCSTWRAVSRSELLWHRLTTRIWGRTYRLLDTWRDEYVYWHTIARNFRTGRSLHTVLRYD 60
Query: 136 PSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAV 195
SDVD PDGL CRCL +S +LACGFADG VRLFDL TRLH+ TFRP H DRLGQFSRAV
Sbjct: 61 QSDVDEPDGLMCRCLAISLRHLACGFADGTVRLFDLATRLHITTFRPHHRDRLGQFSRAV 120
Query: 196 SGI-IITDSQLIFATLDGDIHVAVI--DDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWV 251
SGI II D++L+FA++DGDIHV +I + VA + TR H G+VM+DGVL+DF GC R+WV
Sbjct: 121 SGIVIIADARLVFASIDGDIHVGIIAPNPVAISPTRRVHEGNVMNDGVLVDFAGCDRWWV 180
Query: 252 GLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA 310
GLYAG+ GRAFHIWD +EE VFVGG LTD +V GW ML E TE VGRVRV++ ESAVA
Sbjct: 181 GLYAGVPGRAFHIWDGNSEELVFVGGSLTDPESVTGWHMLAELTEQVGRVRVSNQESAVA 240
Query: 311 CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV 370
CTS +++ DLRNQ +VL E G VTS+DV+ E YIVV+ +AIVRRV
Sbjct: 241 CTSLQLMVLDLRNQEVVLNEEENGVVRIVTSMDVSNETYIVVDGNG-------VAIVRRV 293
Query: 371 DTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVIA 430
DT EEVC F++R + V+GC+N GYA+M G IRVW++E G+YM FRERIG A
Sbjct: 294 DTMEEVCTFTVRGAADRGVVGCINMGYAVMSSGGTIRVWDIEHGQYMCRFRERIGAAN-A 352
Query: 431 FVGDDRHVAASC-GTNIHLWDFGA 453
V +DR+VAAS T +HLWDFGA
Sbjct: 353 IVANDRYVAASAFDTTLHLWDFGA 376
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499483|ref|XP_003518569.1| PREDICTED: transcriptional regulator STERILE APETALA-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 231/442 (52%), Positives = 287/442 (64%), Gaps = 22/442 (4%)
Query: 22 GDFEGPSSSRQRRRAVNEVWPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWR 81
G FE SSS QR+RA+NEV PEP +EALA Q+A++A+ GRL+AA+ALA +FQVCSTWR
Sbjct: 40 GQFEASSSS-QRQRAMNEVLPEPLLEALATQLALDAANYNGRLSAASALAILFQVCSTWR 98
Query: 82 AVSRSDLLWHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRRYTHFN-LYFDPSDVD 140
VSRSDLLW RLTRRIW RT L ATW+ EY+Y HRTA+NF T R+ F+ FDPS D
Sbjct: 99 EVSRSDLLWQRLTRRIWRRTYQLRATWQLEYMYWHRTARNFSTGRHRFFDQAVFDPS--D 156
Query: 141 NPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII 200
+ L CRCL LSD +LACGF DG+VRLFDL TR HV TF H G FSR+VSGI+I
Sbjct: 157 HHHHLLCRCLALSDTHLACGFVDGSVRLFDLETRAHVTTFLSLHGHLFGPFSRSVSGIVI 216
Query: 201 TDSQLIFATLDGDIHVAVIDDVAN-ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG 259
+S + FA LDGDI+V +D + R A G V+++GVL+ F G R+WVGLYAG+AG
Sbjct: 217 INSSITFARLDGDIYVDNVDGPGPIQARRAVEGDVVNNGVLVGFAGTGRWWVGLYAGIAG 276
Query: 260 RAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVIT 318
RAF IWD ++EE VFVGG LTD TVMGW MLTE E VGRVRVT E VACT+SR++
Sbjct: 277 RAFQIWDARSEERVFVGGSLTDPETVMGWHMLTELVEAVGRVRVTEREYVVACTASRMVC 336
Query: 319 FDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCR 378
F RN ++L + G G V+S+D + EAY+V+E + VRR T+E + R
Sbjct: 337 FSFRNPEVLLRDVGSTMGFVVSSLDASQEAYVVLERNG-------VGTVRRASTYERLSR 389
Query: 379 FSLRADRNVNVMGCMNQGYALM-----CVEGVIRVWEVEG--GEYMYSFRERIGEEVIAF 431
F L + CMN GY L +RVW++E G + R G V +
Sbjct: 390 FRLNRLWVRGLWACMNLGYVLTYSPAPSPSPSLRVWDIEQAIGRLCVTLGVRAG-YVNSL 448
Query: 432 VGDDRHVAASCG-TNIHLWDFG 452
V +DRHV+ S NI+L DFG
Sbjct: 449 VANDRHVSISSNDNNINLLDFG 470
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553464|ref|XP_003545076.1| PREDICTED: transcriptional regulator STERILE APETALA-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 239/447 (53%), Positives = 294/447 (65%), Gaps = 24/447 (5%)
Query: 20 RGGDFEGPSSSRQRRRAVNEVWPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCST 79
R G FE SSS QR+RA+NEV PEPF+EALA Q+A++A+ GRL+AA+ALA +FQVCST
Sbjct: 37 RSGQFEASSSSSQRQRAMNEVLPEPFLEALATQLALDAANYNGRLSAASALAILFQVCST 96
Query: 80 WRAVSRSDLLWHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRRYTHFN-LYFDPSD 138
WR VSRSDLLW RLTRRIW RT L ATW+ EY+Y HRTA+NF T R+ F+ FDPSD
Sbjct: 97 WREVSRSDLLWQRLTRRIWRRTYRLRATWQLEYMYWHRTARNFSTGRHRFFDPPVFDPSD 156
Query: 139 VDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGI 198
L CRCL LSD +LACGF DG VRLFDL TR HV TF H G FSR+VSGI
Sbjct: 157 HHLLQNLLCRCLALSDTHLACGFVDGTVRLFDLETRAHVTTFLSLHGHLFGPFSRSVSGI 216
Query: 199 IITDSQLIFATLDGDIHVAVIDDV---ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYA 255
+I +S + FA LDGDI+V ++ ++ R A G V+++GVL+ F G R+WVGL+A
Sbjct: 217 VIFNSNIAFARLDGDIYVDNVNGPGPGPSQARRAVEGDVVNNGVLVGFAGTGRWWVGLFA 276
Query: 256 GLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSS 314
G+AGRAF IWD ++EE VFVGG LTD TVMGW MLTE E VGRVRVT E VACT S
Sbjct: 277 GIAGRAFQIWDARSEERVFVGGSLTDPETVMGWHMLTELVEAVGRVRVTEREYVVACTGS 336
Query: 315 RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE 374
R++ F RN ++L + G G V+S+D + EAY+VVE + VRRV T E
Sbjct: 337 RLVCFSFRNPEVLLRDVGSTTGFVVSSLDASQEAYVVVERNG-------VGTVRRVSTLE 389
Query: 375 EVCRFSLRADRNVNVMG---CMNQGYALM---CVEGVIRVWEVEG--GEYMYSFRERIGE 426
+ RF R +R + V G CMN GYAL +RVW++E G + R G
Sbjct: 390 RLSRF--RLNRLLWVQGLWACMNLGYALTYSPSPSPSLRVWDIEQAIGRLCVTLGLRAG- 446
Query: 427 EVIAFVGDDRHVAASCG-TNIHLWDFG 452
E+ +FV +DRHVA S NI+L DFG
Sbjct: 447 ELNSFVANDRHVAISSNDNNINLLDFG 473
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | ||||||
| TAIR|locus:2177271 | 446 | SAP "STERILE APETALA" [Arabido | 0.927 | 0.941 | 0.601 | 1.3e-137 |
| TAIR|locus:2177271 SAP "STERILE APETALA" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1347 (479.2 bits), Expect = 1.3e-137, P = 1.3e-137
Identities = 263/437 (60%), Positives = 322/437 (73%)
Query: 24 FEGPSSSRQRRRAVNEVWPEPFVEALAAQVAIEASRSVGRXXXXXXXXNVFQVCSTWRAV 83
FE PS SR RR A N+VWPEPF+E+LA QVA+ AS S G NVF+VC+TW AV
Sbjct: 19 FEAPSPSRPRRGA-NDVWPEPFLESLAVQVAVNASTSAGLLAAAPALANVFRVCTTWHAV 77
Query: 84 SRSDLLWHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPD 143
SRSD LW L+R++W RT+L+H TWRDE+IYRHRTA+NFRTR +T+F L FDPSDVD PD
Sbjct: 78 SRSDHLWQLLSRQVWARTHLMHDTWRDEFIYRHRTARNFRTRTHTYFTLQFDPSDVDEPD 137
Query: 144 GLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS 203
L+CRCLTLSDLYLA GFADG VRLF L RLHVRT RP DR G+FSRAVSGI+I+DS
Sbjct: 138 SLSCRCLTLSDLYLAAGFADGTVRLFLLNNRLHVRTLRPPLRDRFGRFSRAVSGIVISDS 197
Query: 204 QLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFH 263
+L FAT+DGDIHVA ID V + TRTA+ G +++DG L+DFTGC R+WVGL+AG+ GRAFH
Sbjct: 198 RLTFATMDGDIHVAEIDGVGH-TRTAYAGDIVNDGALVDFTGCGRWWVGLFAGVPGRAFH 256
Query: 264 IWDRQAEEV-FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLR 322
IWD +EE FVGG LTD VMGW LTE T +GR+R++ +E+AVACT R++ DLR
Sbjct: 257 IWDCNSEETTFVGGTLTDPEAVMGWHTLTELTTSLGRLRISGNETAVACTRWRIMVIDLR 316
Query: 323 NQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSL 381
NQG+++GE RGL VT D N EAY+ +++R N A VRRV+T + VC F +
Sbjct: 317 NQGVIIGEDEEQRRGLIVTGFDANDEAYVRLDSRG--N-----ASVRRVNTQQTVCEFRV 369
Query: 382 RADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS 441
VMGC+N+ +ALMC G++RVWEVE GEY+YS RER+GE V A V DDRHVA +
Sbjct: 370 SGAAQRRVMGCVNRLHALMCAGGIMRVWEVERGEYLYSIRERVGE-VDAIVADDRHVAVA 428
Query: 442 CGTN-----IHLWDFGA 453
++ IHLWDFGA
Sbjct: 429 SASSTAQSIIHLWDFGA 445
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.138 0.436 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 453 424 0.00084 118 3 11 22 0.46 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 618 (66 KB)
Total size of DFA: 287 KB (2148 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.39u 0.10s 32.49t Elapsed: 00:00:02
Total cpu time: 32.39u 0.10s 32.49t Elapsed: 00:00:02
Start: Thu May 9 23:12:27 2013 End: Thu May 9 23:12:29 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FKH1 | SAP_ARATH | No assigned EC number | 0.6057 | 0.9470 | 0.9618 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 453 | |||
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 0.001 |
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 70 LANVFQVCSTWRAVSRSDLLWHRLTRR 96
L + VC WR ++ D LW RL R
Sbjct: 21 LLRLALVCRRWRELASDDSLWRRLCLR 47
|
This is an F-box-like family. Length = 47 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.98 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.95 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.93 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.93 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.92 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.92 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| PTZ00421 | 493 | coronin; Provisional | 99.91 | |
| PTZ00421 | 493 | coronin; Provisional | 99.91 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.91 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.9 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.89 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.89 | |
| PTZ00420 | 568 | coronin; Provisional | 99.89 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.88 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.87 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.87 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.87 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.87 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.85 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.85 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.84 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.84 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.83 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.83 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.83 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.83 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.81 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.81 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.8 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.79 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.78 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.78 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.78 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.77 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.77 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.76 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.76 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.76 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.76 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.75 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.74 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.74 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.74 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.74 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.74 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.73 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.73 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.71 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.69 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.68 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.68 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.68 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.68 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.66 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.66 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.65 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.64 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.62 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.62 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.61 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.6 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.59 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.59 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.59 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.58 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.58 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.58 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.57 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.57 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.56 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.52 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.52 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.51 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.49 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.49 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.49 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.48 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.46 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.45 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.43 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.41 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.4 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.4 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.35 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.34 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.32 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.28 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.27 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.24 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.24 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.23 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.21 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.19 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.16 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.16 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.13 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.13 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.11 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.11 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.11 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.1 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.09 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.09 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.06 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.05 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.05 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.03 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.03 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.02 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.99 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.96 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.96 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.94 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.94 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.93 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.9 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.88 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.87 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.85 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.85 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.81 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.79 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.79 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.77 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.76 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.76 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.74 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.73 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.73 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.72 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.71 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.67 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.64 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.63 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.6 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.59 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.58 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 98.57 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.54 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.54 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.53 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.53 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.52 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.52 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.48 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.48 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.47 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.47 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.37 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.36 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.36 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.33 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.32 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.32 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.32 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.31 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.3 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.28 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.23 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.23 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.19 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.18 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.07 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.06 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.05 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.01 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.01 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.99 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.97 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.93 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.91 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.91 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.88 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 97.88 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.82 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.82 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.76 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.76 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.76 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.75 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.71 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.7 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.66 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.66 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 97.63 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.58 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.54 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.51 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 97.51 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 97.44 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.38 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.32 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.31 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.26 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.17 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.12 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.1 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.08 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.06 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.06 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.04 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.76 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 96.6 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.54 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.3 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.22 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.15 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.12 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.04 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 96.01 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.91 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 95.83 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 95.58 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 95.55 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.51 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.22 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 95.21 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 95.04 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 94.86 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 94.6 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 94.49 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 94.08 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 94.07 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 93.89 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 93.74 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 93.73 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 93.59 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 93.55 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 93.45 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 93.29 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 92.84 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 92.77 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 92.6 | |
| KOG3926 | 332 | consensus F-box proteins [Amino acid transport and | 91.52 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 90.53 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 89.47 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 89.36 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.32 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 89.04 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 88.64 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.43 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 88.19 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 88.07 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 87.7 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 87.65 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 87.61 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 86.39 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 86.23 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 86.12 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 85.37 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 85.36 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 85.04 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 84.95 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 83.88 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 83.42 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 83.09 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 83.05 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 82.16 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 80.84 |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-59 Score=448.04 Aligned_cols=366 Identities=16% Similarity=0.272 Sum_probs=314.1
Q ss_pred ccccCCcchHHHHH----HHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhhc------cCC------
Q 046773 37 VNEVWPEPFVEALA----AQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRRI------WGR------ 100 (453)
Q Consensus 37 ~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~~------~~~------ 100 (453)
+..+++.|||++|| .+++..|++||+ +.+||.+..||+.|+.+..+..+|+++.++. |.+
T Consensus 66 ~rpmLqrDFi~~lP~~gl~hi~e~ilsyld----~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rq 141 (499)
T KOG0281|consen 66 LKPMLQRDFITALPEQGLDHIAENILSYLD----ALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQ 141 (499)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHhcc----hhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccC
Confidence 45678899999999 999999999988 5599999999999999999999999998652 211
Q ss_pred ---------C-------C-cCcchhHHHHHHHhhhhhcccccCceeeEEeeCCCCCCCCCCeEEEEEEecCCEEEEEeCC
Q 046773 101 ---------T-------N-LLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSDLYLACGFAD 163 (453)
Q Consensus 101 ---------~-------~-~~~~~Wk~~y~~~~~~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~~~LaSGS~D 163 (453)
+ + .+...|-..|++-..++.|||.|++....++..+ .|.++ |||||+++..|+||+.|
T Consensus 142 w~~~lf~~r~~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~S---e~skg--VYClQYDD~kiVSGlrD 216 (499)
T KOG0281|consen 142 WDQYLFKNRPNDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRS---ENSKG--VYCLQYDDEKIVSGLRD 216 (499)
T ss_pred cchhhccCCCCcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCc---ccCCc--eEEEEecchhhhccccc
Confidence 1 0 1234677889999999999999999999887653 23466 78999999999999999
Q ss_pred CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEE
Q 046773 164 GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLI 241 (453)
Q Consensus 164 ~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v 241 (453)
+||||||..+.+|++.|.||++ +|-+++|+.+.|+|||.|.||+|||+++ | +.++-.|+..|. .+
T Consensus 217 nTikiWD~n~~~c~~~L~GHtG--------SVLCLqyd~rviisGSSDsTvrvWDv~t-ge~l~tlihHceaVL----hl 283 (499)
T KOG0281|consen 217 NTIKIWDKNSLECLKILTGHTG--------SVLCLQYDERVIVSGSSDSTVRVWDVNT-GEPLNTLIHHCEAVL----HL 283 (499)
T ss_pred CceEEeccccHHHHHhhhcCCC--------cEEeeeccceEEEecCCCceEEEEeccC-CchhhHHhhhcceeE----EE
Confidence 9999999999999999999876 7889999999999999999999999999 6 677777876553 36
Q ss_pred EEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEEC
Q 046773 242 DFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDL 321 (453)
Q Consensus 242 ~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl 321 (453)
.|+.. +++++|.|.+|+|||+.+..- +..-+.|.||...||.|.|+..-+++||+|.|||+||+
T Consensus 284 rf~ng-----~mvtcSkDrsiaVWdm~sps~-----------it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 284 RFSNG-----YMVTCSKDRSIAVWDMASPTD-----------ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST 347 (499)
T ss_pred EEeCC-----EEEEecCCceeEEEeccCchH-----------HHHHHHHhhhhhheeeeccccceEEEecCCceEEEEec
Confidence 77654 588999999999999987651 11125688999999999999987888899999999999
Q ss_pred CCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE
Q 046773 322 RNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 322 ~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~ 401 (453)
.|+.++.++.||..+ +.|+...+..++++|+|. |||+||+..|.|++.+.+|++.|+.+.| |.+.++++
T Consensus 348 st~efvRtl~gHkRG--IAClQYr~rlvVSGSSDn-------tIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSG 416 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRG--IACLQYRDRLVVSGSSDN-------TIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 416 (499)
T ss_pred cceeeehhhhccccc--ceehhccCeEEEecCCCc-------eEEEEeccccHHHHHHhchHHhhhheee--cCceeeec
Confidence 999998888777655 568888899999999999 9999999999999999999998988876 56777777
Q ss_pred eC-CeEEEEECCCCe---------EEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 402 VE-GVIRVWEVEGGE---------YMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 402 s~-~tIrlWD~~tG~---------~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+- |+|||||+.++. |+.++..|++. |..+.+|..+|+++ .|.+|.||||-
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgR-VFrLQFD~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGR-VFRLQFDEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhccce-eEEEeecceEEEeccCCCeEEEEEcC
Confidence 65 999999998863 78888899999 99999999999988 99999999984
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=403.05 Aligned_cols=365 Identities=19% Similarity=0.321 Sum_probs=304.8
Q ss_pred cccccccCCcchHHHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhhccCC---------C---
Q 046773 34 RRAVNEVWPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRRIWGR---------T--- 101 (453)
Q Consensus 34 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~~~~~---------~--- 101 (453)
-.+.+...+.||+.-||.|+.++|+.||+ .+.|++++|||+.|+.+++++..|.++|+..-+. .
T Consensus 96 ~~~~~~~~~~dfi~~lp~el~~~il~~Ld----~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T KOG0274|consen 96 GNLLEPLGQRDFLSLLPSELSLHILSFLD----GRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKS 171 (537)
T ss_pred hhhcccccccchhhcccchhcccccccCC----HHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCccccccc
Confidence 34447788999999999999999999987 6799999999999999999999999999763211 0
Q ss_pred CcCcchhHHHHHHHhhhhhcccccCceeeEEeeCCCCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEE-e
Q 046773 102 NLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRT-F 180 (453)
Q Consensus 102 ~~~~~~Wk~~y~~~~~~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~t-l 180 (453)
....++||+.|.++.+..+||+..........+ +|++ .+ +.|.||.++++++|+.|.||++||..++.++.+ |
T Consensus 172 ~~~~~~~ks~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~-~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l 245 (537)
T KOG0274|consen 172 GFKGRPWKSFYRRRFRLSKNWRKLFRRGYKVLL---GTDD--HV-VLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRL 245 (537)
T ss_pred ccccchhhhhhhhhhhccccccccccccceeec---ccCc--ch-hhhheeecCeEEecCCCceeEEeecccceEEEeec
Confidence 112369999999999999999999888654432 4552 23 789999999999999999999999999999999 9
Q ss_pred cCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEe
Q 046773 181 RPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAG 256 (453)
Q Consensus 181 ~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSg 256 (453)
.||.+ .|++++|. +++|++||.|.|+||||..+ | .+++.+|...+. .+...+. .+++|
T Consensus 246 ~GH~g--------~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~C~~~l~gh~stv~----~~~~~~~-----~~~sg 307 (537)
T KOG0274|consen 246 VGHFG--------GVWGLAFPSGGDKLVSGSTDKTERVWDCST-GECTHSLQGHTSSVR----CLTIDPF-----LLVSG 307 (537)
T ss_pred cCCCC--------CceeEEEecCCCEEEEEecCCcEEeEecCC-CcEEEEecCCCceEE----EEEccCc-----eEeec
Confidence 99876 58889998 89999999999999999887 5 677777765442 2332221 37789
Q ss_pred eCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCC
Q 046773 257 LAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRG 336 (453)
Q Consensus 257 S~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~ 336 (453)
|+|.||||||++++.++ +++++|+++|++|+++.+.++++|.|++|++||+.+++|+..+.||.
T Consensus 308 s~D~tVkVW~v~n~~~l--------------~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~-- 371 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGACL--------------NLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT-- 371 (537)
T ss_pred cCCceEEEEeccCcceE--------------EEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc--
Confidence 99999999999998864 56778999999999998777888889999999999999999888865
Q ss_pred eEEEEEEecC-CEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC
Q 046773 337 LYVTSVDVNA-EAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 337 ~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t 413 (453)
..|.++.+++ +.++++|.|+ +|++||+++. +|++++..|..-+..+. ..+.++++++. ++||+||.++
T Consensus 372 ~~V~sl~~~~~~~~~Sgs~D~-------~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 372 GRVYSLIVDSENRLLSGSLDT-------TIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred ceEEEEEecCcceEEeeeecc-------ceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeeccc
Confidence 5678888888 9999999999 9999999999 99999988876554333 24567777766 9999999999
Q ss_pred CeEEEEecc-cCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 414 GEYMYSFRE-RIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 414 G~~l~tL~g-h~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++|++++++ |.+. |.++......++++ .|++++|||+.
T Consensus 443 ~~~~~~~~~~~~~~-v~~l~~~~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 443 GECLRTLEGRHVGG-VSALALGKEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred CceeeeeccCCccc-EEEeecCcceEEEEecCCeeEEEecc
Confidence 999999999 6677 88888764455555 99999999985
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=334.33 Aligned_cols=279 Identities=15% Similarity=0.179 Sum_probs=233.4
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE--EcCCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII--ITDSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~--f~g~~LasgS~D~ 212 (453)
.||..+ |.|++|+| ..|||||.|.|+||||+.|...+.|.+||.. .|.+|+ +||..||||+.|+
T Consensus 112 ~GH~e~----Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~--------WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 112 AGHGEA----VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN--------WVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred CCCCCc----EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCcc--------EEEEEEECCCcchhhccccCC
Confidence 399866 88999998 5999999999999999999999999999764 566665 5688999999999
Q ss_pred CEEEEEeecCC--cceEEeeecceecC-ceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 213 DIHVAVIDDVA--NETRTAHFGSVMDD-GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 213 tIkvWd~~~~g--~~~~~~~~~~v~~~-~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
+|++||-.+.+ ..++++|.-.|..= -..+...|..++ |||+|-|++|||||+..|+++ .+
T Consensus 180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~---las~skDg~vrIWd~~~~~~~--------------~~ 242 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRR---LASSSKDGSVRIWDTKLGTCV--------------RT 242 (480)
T ss_pred eEEEecCCCCCcccccccCcccceeEEeecccccCCCccc---eecccCCCCEEEEEccCceEE--------------EE
Confidence 99999987722 58888998776420 001334566675 899999999999999988854 35
Q ss_pred eeeeccceeEEEEcCCceE-EEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEE-----------ecC-----------
Q 046773 290 LTEFTEFVGRVRVTSHESA-VACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVD-----------VNA----------- 346 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~~-vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~-----------~~g----------- 346 (453)
|.+|+.+|.||+..+++++ ++|-|.|||+|+...|.|++.+.||.|.+.-.+++ +.+
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 7899999999999988865 45668999999999998888889998866544332 223
Q ss_pred --------------CEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEE
Q 046773 347 --------------EAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWE 410 (453)
Q Consensus 347 --------------~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD 410 (453)
++++++|.|. ++-+|+-. +-+++..+++|...|..+.|+||+++++++|- +.|||||
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~-------tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDF-------TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCc-------eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence 3599999999 99999765 44688889999988999999999999998886 9999999
Q ss_pred CCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 411 VEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 411 ~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
..||+.|.+|+||-+. |. +.+.|.|.|+|+ .|.|+|+||+.
T Consensus 396 g~tGk~lasfRGHv~~-VYqvawsaDsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAA-VYQVAWSADSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred CCCcchhhhhhhccce-eEEEEeccCccEEEEcCCCceEEEEEee
Confidence 9999999999999999 87 778999999999 99999999975
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=332.06 Aligned_cols=267 Identities=16% Similarity=0.226 Sum_probs=230.9
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC----CeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD----SQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g----~~LasgS~D~tIkvWd~~ 220 (453)
+..+.|| ++.|||||++|++|||++.+...+.+|+||.. .|.++.|.+ ..|||||.|+++|+|+++
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~--------~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS--------RVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecccc--------ceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 5666776 47999999999999999999999999999875 567777753 379999999999999998
Q ss_pred cCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 221 DVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 221 ~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
+.- +..+.+|...|. .|+|+|+|++ |+|+|.|.|-||||++|+..+ ....||...|.+
T Consensus 250 ~e~~l~~l~gH~~RVs----~VafHPsG~~---L~TasfD~tWRlWD~~tk~El--------------L~QEGHs~~v~~ 308 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVS----RVAFHPSGKF---LGTASFDSTWRLWDLETKSEL--------------LLQEGHSKGVFS 308 (459)
T ss_pred CCcchhhhhcchhhhe----eeeecCCCce---eeecccccchhhcccccchhh--------------Hhhcccccccce
Confidence 722 677778876654 4999999997 889999999999999999832 235789999999
Q ss_pred EEEcCCceEEEEc--CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEE
Q 046773 300 VRVTSHESAVACT--SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC 377 (453)
Q Consensus 300 v~~s~~~~~vas~--d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~ 377 (453)
++|.+++-+++++ |..-||||++||.|++.+.||...++-.+|+|+|-.++++|.|+ ++||||+.-..++.
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn-------t~kVWDLR~r~~ly 381 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN-------TCKVWDLRMRSELY 381 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC-------cEEEeeecccccce
Confidence 9999998766654 67889999999999999988988887777888888889999998 99999999888899
Q ss_pred EEEecCCCeeEEEEeeCCC-eEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 378 RFSLRADRNVNVMGCMNQG-YALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 378 ~l~~~~~~v~~~~~~~~~~-~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
++..|.+.|..+-+.|+.+ +|++++- +|+|||...+..|+++|.||.+. |. .+++|+..|+|+ .|++||||.
T Consensus 382 ~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k-V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 382 TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK-VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccc-eEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999998555 5555554 99999999999999999999999 76 678999999999 999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=318.49 Aligned_cols=285 Identities=15% Similarity=0.211 Sum_probs=234.0
Q ss_pred hhcccccCceee-EEeeCCCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEE-EEecCCCCCccccccce
Q 046773 119 AQNFRTRRYTHF-NLYFDPSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHV-RTFRPQHSDRLGQFSRA 194 (453)
Q Consensus 119 ~~nw~~g~~~~~-~~~~~~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~-~tl~gh~~~~~~~~s~~ 194 (453)
.+.|...--.|. +. +||. -||.|++++| +.||||+.|++|+|||.++|+++ ++|+||.. .
T Consensus 139 vR~WD~~TeTp~~t~----KgH~----~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K--------~ 202 (480)
T KOG0271|consen 139 VRLWDLDTETPLFTC----KGHK----NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK--------W 202 (480)
T ss_pred EEeeccCCCCcceee----cCCc----cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccc--------c
Confidence 444655544433 32 5897 4589999987 59999999999999999999875 78999875 5
Q ss_pred EEEEEEc-------CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEe
Q 046773 195 VSGIIIT-------DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIW 265 (453)
Q Consensus 195 V~~i~f~-------g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvW 265 (453)
|.++++. .++|||+|.|++|+|||+.. | +.++.+|+..|. .|....+| .|||||-|+|||+|
T Consensus 203 It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-~~~~~~lsgHT~~VT----CvrwGG~g----liySgS~DrtIkvw 273 (480)
T KOG0271|consen 203 ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-GTCVRTLSGHTASVT----CVRWGGEG----LIYSGSQDRTIKVW 273 (480)
T ss_pred eeEEeecccccCCCccceecccCCCCEEEEEccC-ceEEEEeccCccceE----EEEEcCCc----eEEecCCCceEEEE
Confidence 7788874 46899999999999999986 4 566778887764 35665554 48999999999999
Q ss_pred eCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc-------------CC-------------------------ce
Q 046773 266 DRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT-------------SH-------------------------ES 307 (453)
Q Consensus 266 D~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s-------------~~-------------------------~~ 307 (453)
+...|.+. +.|+||..+||.++++ ++ .+
T Consensus 274 ~a~dG~~~--------------r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 274 RALDGKLC--------------RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred EccchhHH--------------HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 99998843 4577888888888776 22 25
Q ss_pred EEEEcCCcEEEEECCCC-ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCe
Q 046773 308 AVACTSSRVITFDLRNQ-GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRN 386 (453)
Q Consensus 308 ~vas~d~tIrlWDl~t~-~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v 386 (453)
+++|+|.++-||+.... +++.+.+||..-+.-.+|+|++..+++||.|. .||+|+..+|+-+.+|.+|-..|
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk-------SVkLW~g~tGk~lasfRGHv~~V 412 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK-------SVKLWDGRTGKFLASFRGHVAAV 412 (480)
T ss_pred EEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc-------ceeeeeCCCcchhhhhhhcccee
Confidence 66778899999998654 34444577765555556788888999999999 99999999999999999998889
Q ss_pred eEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEE--EecCCCEEEEE-eCCcEEEEe
Q 046773 387 VNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIA--FVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 387 ~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a--~s~d~~~lasg-~D~~IklWD 450 (453)
+.++.+.|.+.+++||. .|+|+||+.+.+..+.|+||.++ |.+ .+|||.+++|| .|+.+|||.
T Consensus 413 YqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE-Vf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 413 YQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE-VFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce-EEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999887 99999999999999999999999 885 57999999999 999999995
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=301.54 Aligned_cols=273 Identities=13% Similarity=0.147 Sum_probs=231.7
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||.-+ |+.+-|-| ..+|++|.|.|||+||..||++.++|+||.. +|..|+|+ |..||++|.|=.
T Consensus 106 g~r~~----vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~--------sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 106 GHRSS----VTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTD--------SVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred ccccc----eeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcccc--------ceeEEEEecCccEEEecCCccc
Confidence 67644 66777766 4789999999999999999999999999875 57788887 678999999999
Q ss_pred EEEEEeecC--CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 214 IHVAVIDDV--ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 214 IkvWd~~~~--g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
+++||.++. .+..+.+|...|. .|.|-|.|.+ ++|+|.|+||+.||+.||.+. .+++
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS----~V~f~P~gd~---ilS~srD~tik~We~~tg~cv--------------~t~~ 232 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVS----SVFFLPLGDH---ILSCSRDNTIKAWECDTGYCV--------------KTFP 232 (406)
T ss_pred hhheeHHHHHHHHHHhcCccccee----eEEEEecCCe---eeecccccceeEEecccceeE--------------Eecc
Confidence 999998762 1455666655443 4899999975 889999999999999999864 5688
Q ss_pred eeccceeEEEEcCCceEEEEc--CCcEEEEECCCCceEEEEeeccCCeEEEEEEec----------C-----CEEEEEeC
Q 046773 292 EFTEFVGRVRVTSHESAVACT--SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN----------A-----EAYIVVEN 354 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~vas~--d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~----------g-----~~l~s~s~ 354 (453)
+|..||.-|+++.++.++||. |.++++|=+.+++|...+++|.|.+.+.++.|. | ..+.++|.
T Consensus 233 ~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999999999999999888764 578999999999886656778877766665332 2 26778888
Q ss_pred CCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEe-
Q 046773 355 RELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV- 432 (453)
Q Consensus 355 dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s- 432 (453)
|+ +||+||+.||.|+.++.+|.+||+.++|+|.|+|+++|++ +|+|+||+.+++|+.+++.|..- |+++.
T Consensus 313 Dk-------tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf-vt~lDf 384 (406)
T KOG0295|consen 313 DK-------TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF-VTSLDF 384 (406)
T ss_pred cc-------eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce-eEEEec
Confidence 88 9999999999999999999999999999999999999999 99999999999999999999888 88554
Q ss_pred -cCCCEEEEE-eCCcEEEEec
Q 046773 433 -GDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 433 -~d~~~lasg-~D~~IklWDl 451 (453)
-+-.+++|| -|.++|+|..
T Consensus 385 h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCCceEEeccccceeeeeec
Confidence 455689999 9999999974
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=278.26 Aligned_cols=274 Identities=16% Similarity=0.223 Sum_probs=215.8
Q ss_pred CCCCCCCCeEEEEEEec---CCEEEEEeCCCcEEEEEC-----CCCeEEEEecCCCCCccccccceEEE--EEEcCCeEE
Q 046773 137 SDVDNPDGLTCRCLTLS---DLYLACGFADGAVRLFDL-----TTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLI 206 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs---~~~LaSGS~D~TIrlWD~-----~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~La 206 (453)
+||+ |. |..++.. ++.|.++|.|++|-+|++ +.|..++.|+||.. .|.. +.++|....
T Consensus 12 ~gh~--d~--Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH--------~v~dv~~s~dg~~al 79 (315)
T KOG0279|consen 12 EGHT--DW--VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH--------FVSDVVLSSDGNFAL 79 (315)
T ss_pred cCCC--ce--EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccce--------EecceEEccCCceEE
Confidence 3897 45 6677664 479999999999999986 46777899999754 3444 456799999
Q ss_pred EEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 207 FATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 207 sgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
|+|.|+++++||+++ | .+.+.+|+..|. .|+|+||.+. ++|||.|+||++||+.+++.++-+.
T Consensus 80 S~swD~~lrlWDl~~-g~~t~~f~GH~~dVl----sva~s~dn~q---ivSGSrDkTiklwnt~g~ck~t~~~------- 144 (315)
T KOG0279|consen 80 SASWDGTLRLWDLAT-GESTRRFVGHTKDVL----SVAFSTDNRQ---IVSGSRDKTIKLWNTLGVCKYTIHE------- 144 (315)
T ss_pred eccccceEEEEEecC-CcEEEEEEecCCceE----EEEecCCCce---eecCCCcceeeeeeecccEEEEEec-------
Confidence 999999999999998 6 455667887765 5999999986 7899999999999998888553110
Q ss_pred eeeeeeeeeccceeEEEEcCCc----eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCcccc
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHE----SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQ 360 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~----~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~ 360 (453)
.+++++|+||+|+|+. ++++|.|++||+||+++.+....+.||.+.+....++|||...+++..|+
T Consensus 145 ------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg---- 214 (315)
T KOG0279|consen 145 ------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG---- 214 (315)
T ss_pred ------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCc----
Confidence 1237899999999984 35557799999999998665444577777666667889999999998899
Q ss_pred CcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEec----cc---CCceEE----
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFR----ER---IGEEVI---- 429 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~----gh---~~~~V~---- 429 (453)
.+.+||++.++++.++.. .+.|.+++|+|+.-.+.++.+..|||||+++++++.+|+ |. .+. +.
T Consensus 215 ---~~~LwdL~~~k~lysl~a-~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~-~~clsl 289 (315)
T KOG0279|consen 215 ---EAMLWDLNEGKNLYSLEA-FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGD-PICLSL 289 (315)
T ss_pred ---eEEEEEccCCceeEeccC-CCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCC-cEEEEE
Confidence 999999999999888753 355889999987433333444779999999999988774 22 112 22
Q ss_pred EEecCCCEEEEE-eCCcEEEEecC
Q 046773 430 AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 430 a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++++||..|-+| .|+.|++|.+.
T Consensus 290 aws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEEEee
Confidence 677999999999 99999999875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=274.72 Aligned_cols=260 Identities=17% Similarity=0.235 Sum_probs=205.0
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCCCEEEEEeecCC---cceEEe
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDGDIHVAVIDDVA---NETRTA 229 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~tIkvWd~~~~g---~~~~~~ 229 (453)
-+|||+|||.|||+|.+.||+|.+|++ |.. ..|.++.+.+ +.||.| .-..||++|+++.. +.++.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~d-------sqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-HPD-------SQVNRLEITPDKKDLAAA-GNQHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-cCc-------cceeeEEEcCCcchhhhc-cCCeeEEEEccCCCCCceeEEec
Confidence 489999999999999999999999997 433 2688887654 456655 45679999999832 344555
Q ss_pred eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--e
Q 046773 230 HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--S 307 (453)
Q Consensus 230 ~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~ 307 (453)
|+..|. .|.|..|||| +++||.|+|+||||++.-.+-+ +-.|.++|++|-++|+. +
T Consensus 82 h~kNVt----aVgF~~dgrW---MyTgseDgt~kIWdlR~~~~qR---------------~~~~~spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 82 HTKNVT----AVGFQCDGRW---MYTGSEDGTVKIWDLRSLSCQR---------------NYQHNSPVNTVVLHPNQTEL 139 (311)
T ss_pred cCCceE----EEEEeecCeE---EEecCCCceEEEEeccCcccch---------------hccCCCCcceEEecCCcceE
Confidence 655443 5999999998 8999999999999999854211 22566899999999865 3
Q ss_pred EEEEcCCcEEEEECCCCceEEEEeec-cCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC------eeEEEEE
Q 046773 308 AVACTSSRVITFDLRNQGMVLGERGY-GRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF------EEVCRFS 380 (453)
Q Consensus 308 ~vas~d~tIrlWDl~t~~~~~~~~g~-~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg------~~v~~l~ 380 (453)
+++.-++.||+|||.+..|.+.+... ...+....+.++|.+++.+..-| +..+|++-+. +++..++
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG-------~cyvW~l~~~~~~s~l~P~~k~~ 212 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG-------NCYVWRLLNHQTASELEPVHKFQ 212 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCc-------cEEEEEccCCCccccceEhhhee
Confidence 44444589999999998776554211 11222345679999999998888 9999998754 4566778
Q ss_pred ecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC-eEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecCC
Q 046773 381 LRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG-EYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFGA 453 (453)
Q Consensus 381 ~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG-~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~~ 453 (453)
.|...+....++|+.++|++|++ .|+|||++++- +.-..|+||..+ || +||.|+++|++| +|+++||||+.+
T Consensus 213 ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rW-vWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 213 AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRW-VWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCce-EEeeeeccCccEEEecCCCCceeeccccc
Confidence 88777888899999999999988 99999999987 666788999999 99 799999999999 999999999863
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=297.92 Aligned_cols=225 Identities=18% Similarity=0.275 Sum_probs=187.9
Q ss_pred cceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC
Q 046773 192 SRAVSGIIITDSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE 270 (453)
Q Consensus 192 s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg 270 (453)
+..|-++++|+.+++||+.|+||||||.++.- ...+.+|+|.|. .+.|+. + .|+|||.|.||+|||++||
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL----CLqyd~--r---viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL----CLQYDE--R---VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEE----eeeccc--e---EEEecCCCceEEEEeccCC
Confidence 34688999999999999999999999998732 577889999874 255543 4 4889999999999999999
Q ss_pred cEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceE---EEEeeccCCeEEEEEEecCC
Q 046773 271 EVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMV---LGERGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 271 ~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~---~~~~g~~~~~~v~~~~~~g~ 347 (453)
+.+ ++|.+|++.|-.++|+.+-.++.|-|.+|++||+.+..-+ +.++|| ...|+.++|+..
T Consensus 268 e~l--------------~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH--rAaVNvVdfd~k 331 (499)
T KOG0281|consen 268 EPL--------------NTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH--RAAVNVVDFDDK 331 (499)
T ss_pred chh--------------hHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhh--hhheeeeccccc
Confidence 954 4678999999999999854445455789999999876421 223555 567889999999
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee--CCCeEEEEeC-CeEEEEECCCCeEEEEecccC
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM--NQGYALMCVE-GVIRVWEVEGGEYMYSFRERI 424 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~--~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~ 424 (453)
.+++||+|. |||+|+..|+++++++.+|.-++ .|. .++.++++|+ +||||||++.|+||+.|+||.
T Consensus 332 yIVsASgDR-------TikvW~~st~efvRtl~gHkRGI----AClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 332 YIVSASGDR-------TIKVWSTSTCEFVRTLNGHKRGI----ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred eEEEecCCc-------eEEEEeccceeeehhhhcccccc----eehhccCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 999999999 99999999999999998876443 343 3566677776 999999999999999999999
Q ss_pred CceEEEEecCCCEEEEE-eCCcEEEEecCC
Q 046773 425 GEEVIAFVGDDRHVAAS-CGTNIHLWDFGA 453 (453)
Q Consensus 425 ~~~V~a~s~d~~~lasg-~D~~IklWDl~~ 453 (453)
+- |.++.+|.++|+|| +||+||||||.|
T Consensus 401 eL-vRciRFd~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 401 EL-VRCIRFDNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred Hh-hhheeecCceeeeccccceEEEEeccc
Confidence 88 99999999999999 999999999974
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=275.46 Aligned_cols=271 Identities=15% Similarity=0.167 Sum_probs=214.6
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC--eEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS--QLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~--~LasgS~D~ 212 (453)
+||. .||.|++++| .+++|||.|+||||||+.||+...||.||-. .|++++++.+ +|.+++.|+
T Consensus 148 ~gHl----gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~--------~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 148 SGHL----GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE--------TVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred hhcc----ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhh--------eeeeeeecccCceEEEecCCC
Confidence 3886 5799999997 6999999999999999999999999999754 6899999875 799999999
Q ss_pred CEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 213 DIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 213 tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
.||-||++..- |+-+.+|...|. .++..|.-+. |++|+.|.|+||||++|.... ++|.
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~----~L~lhPTldv---l~t~grDst~RvWDiRtr~~V--------------~~l~ 274 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVY----CLDLHPTLDV---LVTGGRDSTIRVWDIRTRASV--------------HVLS 274 (460)
T ss_pred eeEEEechhhhhHHHhccccceeE----EEecccccee---EEecCCcceEEEeeecccceE--------------EEec
Confidence 99999998733 677778876664 4777777553 899999999999999998732 5688
Q ss_pred eeccceeEEEEcCC--ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEE
Q 046773 292 EFTEFVGRVRVTSH--ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 292 ~h~~~v~~v~~s~~--~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
||+.+|.+|.+.|- .++++|.|.||||||++.|+...++..|...+...++.|.-..++|+|.| +|+-|+
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d--------nik~w~ 346 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD--------NIKQWK 346 (460)
T ss_pred CCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc--------cceecc
Confidence 99999999998742 35666789999999999998766665555444445556666666766655 588999
Q ss_pred cCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe---c--cc---CCceEE--EEecCCCEE
Q 046773 370 VDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF---R--ER---IGEEVI--AFVGDDRHV 438 (453)
Q Consensus 370 ~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL---~--gh---~~~~V~--a~s~d~~~l 438 (453)
++.|+.++.+.+|...+.++.... +++++++++ ++|-.||.++|-+.+.+ . |- ..+ |. +|...+.+|
T Consensus 347 ~p~g~f~~nlsgh~~iintl~~ns-D~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEag-I~as~fDktg~rl 424 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHNAIINTLSVNS-DGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAG-IFASCFDKTGSRL 424 (460)
T ss_pred CCccchhhccccccceeeeeeecc-CceEEEcCCceEEEEEecCcCcccccccccccCCccccccc-eeEEeecccCceE
Confidence 999998888888877677776654 467788888 99999999999664443 2 21 122 44 455677899
Q ss_pred EEE-eCCcEEEEe
Q 046773 439 AAS-CGTNIHLWD 450 (453)
Q Consensus 439 asg-~D~~IklWD 450 (453)
+++ .|++||+|.
T Consensus 425 it~eadKtIk~~k 437 (460)
T KOG0285|consen 425 ITGEADKTIKMYK 437 (460)
T ss_pred EeccCCcceEEEe
Confidence 999 999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=278.20 Aligned_cols=246 Identities=11% Similarity=0.133 Sum_probs=203.5
Q ss_pred ccccCceeeEEeeCCCCCCCCCCeEEEEEEecCC----EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEE
Q 046773 122 FRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSDL----YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG 197 (453)
Q Consensus 122 w~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~~----~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~ 197 (453)
|..-.+... -.| .||+. . |.++.|.|. .|||+|.|+|||||++.+-..+..|.||.. .|..
T Consensus 202 W~~~~~~~~-~~l--~gH~~--~--v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~--------RVs~ 266 (459)
T KOG0272|consen 202 WSVPQCNLL-QTL--RGHTS--R--VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLA--------RVSR 266 (459)
T ss_pred eecCCccee-EEE--ecccc--c--eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchh--------hhee
Confidence 555555322 222 38983 3 789999863 799999999999999999999999998754 5666
Q ss_pred EEE--cCCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe
Q 046773 198 III--TDSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV 274 (453)
Q Consensus 198 i~f--~g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~ 274 (453)
++| +|+.|+|+|.|.|-++||+++.- +....+|...|. .++|.|||.. ++||+.|..-||||++||++..
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~----~iaf~~DGSL---~~tGGlD~~~RvWDlRtgr~im 339 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVF----SIAFQPDGSL---AATGGLDSLGRVWDLRTGRCIM 339 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccc----eeEecCCCce---eeccCccchhheeecccCcEEE
Confidence 776 58899999999999999999821 455667877765 4899999985 7899999999999999999532
Q ss_pred cccccCCcceeeeeeeeeeccceeEEEEcCCceEE--EEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEe-cCCEEEE
Q 046773 275 GGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV--ACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDV-NAEAYIV 351 (453)
Q Consensus 275 g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v--as~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~-~g~~l~s 351 (453)
.|.+|..+|..|.|+|++..+ +|+|+++|||||+...++.+..+|..-+.-..|+| .|..|++
T Consensus 340 --------------~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 340 --------------FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred --------------EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEE
Confidence 377899999999999998644 46789999999998887776666654433355676 5678999
Q ss_pred EeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEE
Q 046773 352 VENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWE 410 (453)
Q Consensus 352 ~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD 410 (453)
+|.|. +++||...+.+++.++.+|++.|.++..++++.++++++- +|||+|.
T Consensus 406 asyD~-------t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 406 ASYDN-------TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCc-------ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999 9999999999999999999999999999999999888876 9999995
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=287.40 Aligned_cols=254 Identities=15% Similarity=0.174 Sum_probs=207.1
Q ss_pred CCCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCE
Q 046773 137 SDVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDI 214 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tI 214 (453)
.||.. + |++++|. +++|+|||.|+|+||||+.+|+|.++|.||.. .|.++.+.+-.+++||.|.||
T Consensus 246 ~GH~g--~--V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s--------tv~~~~~~~~~~~sgs~D~tV 313 (537)
T KOG0274|consen 246 VGHFG--G--VWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS--------SVRCLTIDPFLLVSGSRDNTV 313 (537)
T ss_pred cCCCC--C--ceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCc--------eEEEEEccCceEeeccCCceE
Confidence 49984 4 7899998 79999999999999999999999999999765 688888889999999999999
Q ss_pred EEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee
Q 046773 215 HVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 215 kvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
|||+++++- ++++++|.+.|. .|..+ +. .|+|||.|++|+|||+.+++++ ++|++|
T Consensus 314 kVW~v~n~~~l~l~~~h~~~V~----~v~~~--~~---~lvsgs~d~~v~VW~~~~~~cl--------------~sl~gH 370 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRGHTGPVN----CVQLD--EP---LLVSGSYDGTVKVWDPRTGKCL--------------KSLSGH 370 (537)
T ss_pred EEEeccCcceEEEeccccccEE----EEEec--CC---EEEEEecCceEEEEEhhhceee--------------eeecCC
Confidence 999999732 777888887764 24444 22 4889999999999999998865 578899
Q ss_pred ccceeEEEEcC-CceEEEEcCCcEEEEECCCC-ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 294 TEFVGRVRVTS-HESAVACTSSRVITFDLRNQ-GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 294 ~~~v~~v~~s~-~~~~vas~d~tIrlWDl~t~-~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
+.+|.++.+++ ...+++|.|++||+||+++. +|++++.+| ...|..+.+.++.|++++.|+ +||+||.+
T Consensus 371 ~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h--~~~v~~l~~~~~~Lvs~~aD~-------~Ik~WD~~ 441 (537)
T KOG0274|consen 371 TGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGH--TSLVSSLLLRDNFLVSSSADG-------TIKLWDAE 441 (537)
T ss_pred cceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCC--cccccccccccceeEeccccc-------cEEEeecc
Confidence 99999999998 77888899999999999999 898887655 456788889999999999999 99999999
Q ss_pred CCeeEEEEEec-CCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEecCCC
Q 046773 372 TFEEVCRFSLR-ADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDR 436 (453)
Q Consensus 372 tg~~v~~l~~~-~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~ 436 (453)
++++++++..+ -..+..+.+. ...++.++. ++++|||+.+|++.+++-.+.....+...+.++
T Consensus 442 ~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~~~ 506 (537)
T KOG0274|consen 442 EGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPSSP 506 (537)
T ss_pred cCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhcccccccccccCCC
Confidence 99999999874 2333333322 133444444 999999999999999886555442344445444
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=246.00 Aligned_cols=272 Identities=13% Similarity=0.129 Sum_probs=226.3
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~ 212 (453)
+||.+- |+|+.+++ ++|+|+|.|+.+-|||.-|....+-+.-.. ..|-+.+| +|..+|.|++|+
T Consensus 52 kGH~~K----i~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s--------~WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 52 KGHLNK----IYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS--------SWVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred cccccc----eeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc--------eeEEEEEECCCCCeEEecCcCc
Confidence 499854 78888876 699999999999999999988776664322 35655554 678999999999
Q ss_pred CEEEEEeecC---C----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCccee
Q 046773 213 DIHVAVIDDV---A----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVM 285 (453)
Q Consensus 213 tIkvWd~~~~---g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~ 285 (453)
.+-|+++.+. | .+.+.+|++.+. ...|-+|++ |.+||.|.|.-+||+++|+...
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylS----cC~f~dD~~----ilT~SGD~TCalWDie~g~~~~----------- 180 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLS----CCRFLDDNH----ILTGSGDMTCALWDIETGQQTQ----------- 180 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeE----EEEEcCCCc----eEecCCCceEEEEEcccceEEE-----------
Confidence 9999998752 2 244667888764 367888876 6799999999999999999432
Q ss_pred eeeeeeeeccceeEEEEcC---CceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 286 GWRMLTEFTEFVGRVRVTS---HESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 286 ~w~~l~~h~~~v~~v~~s~---~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
.+.||++-|-++.++| +..++++.|.+.||||++.+.|..++.||...+...+|-|+|..++++|.|+
T Consensus 181 ---~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~------ 251 (343)
T KOG0286|consen 181 ---VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA------ 251 (343)
T ss_pred ---EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc------
Confidence 3558888899999987 3356667789999999999999888888888887788999999999999999
Q ss_pred ceEEEEEcCCCeeEEEEEecC--CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCE
Q 046773 363 RLAIVRRVDTFEEVCRFSLRA--DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRH 437 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~--~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~ 437 (453)
++|++|+...+.+..+.... ..+.+++|+..|++|.++.. .++.+||.-.++....|.||.+. |. .++|||.-
T Consensus 252 -tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR-vScl~~s~DG~a 329 (343)
T KOG0286|consen 252 -TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR-VSCLGVSPDGMA 329 (343)
T ss_pred -eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCe-eEEEEECCCCcE
Confidence 99999999988887775322 33788999999999988877 99999999999999999999998 88 56799999
Q ss_pred EEEE-eCCcEEEEe
Q 046773 438 VAAS-CGTNIHLWD 450 (453)
Q Consensus 438 lasg-~D~~IklWD 450 (453)
|+|| .|.++|||.
T Consensus 330 v~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 330 VATGSWDSTLRIWA 343 (343)
T ss_pred EEecchhHheeecC
Confidence 9999 999999994
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-31 Score=275.62 Aligned_cols=269 Identities=16% Similarity=0.225 Sum_probs=220.7
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe--EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL--HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~ 220 (453)
|.|+.|++ +.|++++.|++|++|++.+++ +++++.+|.. .|..++|+ ++.|++||.|++|||||+.
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~--------~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR--------GVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccc--------ceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 77888875 699999999999999999999 8888887764 57777774 6789999999999999995
Q ss_pred cCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 221 DVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 221 ~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
..+ ..++.+|...+. .++|+|+|+. |+|||.|+||||||++++++. .+|.+|.+.|.
T Consensus 234 ~~~~~~~~l~gH~~~v~----~~~f~p~g~~---i~Sgs~D~tvriWd~~~~~~~--------------~~l~~hs~~is 292 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVT----SVAFSPDGNL---LVSGSDDGTVRIWDVRTGECV--------------RKLKGHSDGIS 292 (456)
T ss_pred CCCeEEEEecCCCCceE----EEEecCCCCE---EEEecCCCcEEEEeccCCeEE--------------EeeeccCCceE
Confidence 434 677888988774 5999999975 889999999999999998864 35789999999
Q ss_pred EEEEcCCce--EEEEcCCcEEEEECCCCc--eEEEEeeccCC--eEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC
Q 046773 299 RVRVTSHES--AVACTSSRVITFDLRNQG--MVLGERGYGRG--LYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 299 ~v~~s~~~~--~vas~d~tIrlWDl~t~~--~~~~~~g~~~~--~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
++.|++++. +++|.|++|++||+.++. |+....++... +...+|++++..+++++.|+ ++++|++..
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~-------~~~~w~l~~ 365 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR-------TLKLWDLRS 365 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC-------eEEEEEccC
Confidence 999998764 444567999999999998 44554444333 45566888899999999999 999999999
Q ss_pred CeeEEEEEecCCCee---EEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEeccc-CCceEE--EEecCCCEEEEE---e
Q 046773 373 FEEVCRFSLRADRNV---NVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRER-IGEEVI--AFVGDDRHVAAS---C 442 (453)
Q Consensus 373 g~~v~~l~~~~~~v~---~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh-~~~~V~--a~s~d~~~lasg---~ 442 (453)
+.++.....|...++ ....++.+.++++++. +.|++||+.++..+..+.+| ... |. ++.|....++++ .
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~-~~~~~~~~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 366 GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAA-VSDLSSHPTENLIASSSFEG 444 (456)
T ss_pred CcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCc-eeccccCCCcCeeeecCcCC
Confidence 999999888876532 2333456777777777 99999999999999999999 655 54 677899999887 4
Q ss_pred CCcEEEEecC
Q 046773 443 GTNIHLWDFG 452 (453)
Q Consensus 443 D~~IklWDl~ 452 (453)
|+.|++|...
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 9999999753
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=253.33 Aligned_cols=280 Identities=12% Similarity=0.153 Sum_probs=212.7
Q ss_pred EEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE---EcC--CeEEEEeCCCCEEEEEee
Q 046773 146 TCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII---ITD--SQLIFATLDGDIHVAVID 220 (453)
Q Consensus 146 ~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~---f~g--~~LasgS~D~tIkvWd~~ 220 (453)
||.+++-.++.|.||+||+++||||. .|++.+++.||.. .+.+++ .+. ..+++||.|+|+++|-++
T Consensus 107 WVSsv~~~~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~--------~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 107 WVSSVKGASKWILTGSYDGTSRIWDL-KGKSIKTIVGHTG--------PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred hhhhhcccCceEEEeecCCeeEEEec-CCceEEEEecCCc--------ceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 37899989999999999999999998 5899999999865 344333 222 259999999999999987
Q ss_pred cCC-----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc--EEecccc-------cCC--cce
Q 046773 221 DVA-----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VFVGGDL-------TDH--NTV 284 (453)
Q Consensus 221 ~~g-----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~~l-------~~~--~~v 284 (453)
... ++..++|...|. .|+..++|.. ++|||.|++|+||+.++.. .+..-+- ... .+-
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~----sVsv~~sgtr---~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVD----SVSVDSSGTR---FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred CchhhhhHHhHhccccccee----EEEecCCCCe---EEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 621 344557877664 4788888876 7899999999999955433 2211100 000 000
Q ss_pred eeeeeeeeeccceeEEEEcCCce-EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcc
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHES-AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRR 363 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~~-~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~ 363 (453)
...-+|.||+++|.+|.+++.+. .++|.|.|||.|||+++++..+..+. ......++.+..+.++++|.|.
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr------- 322 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDR------- 322 (423)
T ss_pred CceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCC-------
Confidence 11247899999999999987554 55677999999999999987665332 1233344556667889999988
Q ss_pred eEEEEEcCCCe---eEEEEEecCCCeeEEEEeeCCCeEEEE-eC-CeEEEEECCCCe-EEEEecccCCceEEEEe-cCCC
Q 046773 364 LAIVRRVDTFE---EVCRFSLRADRNVNVMGCMNQGYALMC-VE-GVIRVWEVEGGE-YMYSFRERIGEEVIAFV-GDDR 436 (453)
Q Consensus 364 ~i~Iw~~~tg~---~v~~l~~~~~~v~~~~~~~~~~~lls~-s~-~tIrlWD~~tG~-~l~tL~gh~~~~V~a~s-~d~~ 436 (453)
.+|+||..++. ..++|.+|.++|.++-.+|...+++.+ +- +++||||+.+-+ .|+++.+|.+. |.++. .++.
T Consensus 323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK-vl~vdW~~~~ 401 (423)
T KOG0313|consen 323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK-VLSVDWNEGG 401 (423)
T ss_pred ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce-EEEEeccCCc
Confidence 99999988763 456788899999999999977766644 43 999999999987 89999999888 87766 5777
Q ss_pred EEEEE-eCCcEEEEe
Q 046773 437 HVAAS-CGTNIHLWD 450 (453)
Q Consensus 437 ~lasg-~D~~IklWD 450 (453)
.|+|| .|++|+|..
T Consensus 402 ~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFK 416 (423)
T ss_pred eEEeccCcceEEEec
Confidence 89999 999999975
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=276.93 Aligned_cols=260 Identities=19% Similarity=0.287 Sum_probs=216.3
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA- 223 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g- 223 (453)
+.|..|++ ..||.|-.|..|++|.+..- .++.+++-. .+ ..+-+.|.|-...+-|-+..+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~---------~l-------~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDAS---------DL-------SNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchh-hhccccchh---------hh-------ccccccccchhhhhccccCCce
Confidence 78999987 58999999999999999654 466665311 11 123344455444444444433
Q ss_pred cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc
Q 046773 224 NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 224 ~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
..++.+|++.|. ...|+|+.++ |.|+|.|.|||||.+.|..++. ...||..||..|+|+
T Consensus 444 ~~~L~GH~GPVy----g~sFsPd~rf---LlScSED~svRLWsl~t~s~~V--------------~y~GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 444 SRTLYGHSGPVY----GCSFSPDRRF---LLSCSEDSSVRLWSLDTWSCLV--------------IYKGHLAPVWDVQFA 502 (707)
T ss_pred eEEeecCCCcee----eeeecccccc---eeeccCCcceeeeecccceeEE--------------EecCCCcceeeEEec
Confidence 466889999887 3799999997 8899999999999999988543 245889999999999
Q ss_pred CCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEe
Q 046773 304 SHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSL 381 (453)
Q Consensus 304 ~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~ 381 (453)
|.+. +++|.|+|.|||......-++.+.||-..+.+..|.|+.+.++++|+|. ++|+||+.+|..++.|.+
T Consensus 503 P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~-------tVRlWDv~~G~~VRiF~G 575 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDR-------TVRLWDVSTGNSVRIFTG 575 (707)
T ss_pred CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCc-------eEEEEEcCCCcEEEEecC
Confidence 9985 5567789999999987655454688887888888999999999999999 999999999999999999
Q ss_pred cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 382 RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 382 ~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|...|.+++++|+|++|++++. +.|+|||+.+|+.+.+|.+|++. |. +|+.||.+||+| .|++|+|||+.
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t-i~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT-IYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc-eeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 9999999999999999999888 99999999999999999999888 87 678999999999 99999999984
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=268.57 Aligned_cols=287 Identities=19% Similarity=0.307 Sum_probs=218.8
Q ss_pred CCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC----eEEEEeCCC
Q 046773 139 VDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS----QLIFATLDG 212 (453)
Q Consensus 139 h~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~----~LasgS~D~ 212 (453)
|+-| |.-++|+| ..||||+.|++|||||+..+.|.+.|+||.+ -|+++.|.++ .|++|..|+
T Consensus 104 He~P----vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG--------vVssl~F~~~~~~~lL~sg~~D~ 171 (775)
T KOG0319|consen 104 HEAP----VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG--------VVSSLLFHPHWNRWLLASGATDG 171 (775)
T ss_pred cCCC----eEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCc--------eEEEEEeCCccchhheeecCCCc
Confidence 7777 66788876 6999999999999999999999999999765 5788999864 589999999
Q ss_pred CEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---EEe-------------
Q 046773 213 DIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---VFV------------- 274 (453)
Q Consensus 213 tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---~~~------------- 274 (453)
++++||+++.. .++.+.|...+. .++|++|+.. +++++.|+.|-|||+.+-+ ++.
T Consensus 172 ~v~vwnl~~~~tcl~~~~~H~S~vt----sL~~~~d~~~---~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~ 244 (775)
T KOG0319|consen 172 TVRVWNLNDKRTCLHTMILHKSAVT----SLAFSEDSLE---LLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLRE 244 (775)
T ss_pred eEEEEEcccCchHHHHHHhhhhhee----eeeeccCCce---EEEeccCcEEEEeehhhhhhhheechhhheeeEEEech
Confidence 99999998522 355566655543 3677777653 5566666666666664322 000
Q ss_pred ------------cc-----------------------------------------------------c------------
Q 046773 275 ------------GG-----------------------------------------------------D------------ 277 (453)
Q Consensus 275 ------------g~-----------------------------------------------------~------------ 277 (453)
|+ +
T Consensus 245 ~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd 324 (775)
T KOG0319|consen 245 ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND 324 (775)
T ss_pred hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch
Confidence 00 0
Q ss_pred ----------------------------------------------c------------cCCcceeeee-----------
Q 046773 278 ----------------------------------------------L------------TDHNTVMGWR----------- 288 (453)
Q Consensus 278 ----------------------------------------------l------------~~~~~v~~w~----------- 288 (453)
| ..++++..|+
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~ 404 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV 404 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhh
Confidence 0 0123444453
Q ss_pred -eeeeeccceeEEEEcC---CceEEEEcCCcEEEEECCCCc-----eEE----EEeeccCCeEEEEEEecCCEEEEEeCC
Q 046773 289 -MLTEFTEFVGRVRVTS---HESAVACTSSRVITFDLRNQG-----MVL----GERGYGRGLYVTSVDVNAEAYIVVENR 355 (453)
Q Consensus 289 -~l~~h~~~v~~v~~s~---~~~~vas~d~tIrlWDl~t~~-----~~~----~~~g~~~~~~v~~~~~~g~~l~s~s~d 355 (453)
+..+|++.|++|+++- ..++++|.|.|||+|++...+ -.+ +...|...+...+++|+...++++|.|
T Consensus 405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD 484 (775)
T KOG0319|consen 405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD 484 (775)
T ss_pred hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence 2457777777777752 234566788899999987510 111 123465566666677888889999999
Q ss_pred CccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEe
Q 046773 356 ELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFV 432 (453)
Q Consensus 356 g~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s 432 (453)
. ++|||+++..+.+.+|.+|.-++-.+.|++++..+++||+ +|||||.+.+..|+.||+||+.. |. +|.
T Consensus 485 k-------taKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a-Vlra~F~ 556 (775)
T KOG0319|consen 485 K-------TAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA-VLRASFI 556 (775)
T ss_pred c-------ceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce-eEeeeee
Confidence 9 9999999988889999999988999999999999999888 99999999999999999999999 76 677
Q ss_pred cCCCEEEEE-eCCcEEEEecC
Q 046773 433 GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 433 ~d~~~lasg-~D~~IklWDl~ 452 (453)
-+|+.|+|+ .||-||||++.
T Consensus 557 ~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 557 RNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred eCCcEEEeccCCCcEEEEecc
Confidence 899999999 99999999975
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=229.52 Aligned_cols=272 Identities=19% Similarity=0.288 Sum_probs=214.8
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
+|.++ |+|++|++ ++|++++.|++|++||+.+++.+..+.+|.. .+..+.+. ++.|++++.|++
T Consensus 7 ~h~~~----i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 7 GHTGG----VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG--------PVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred ccCCC----EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc--------ceeEEEECCCCCEEEEEcCCCe
Confidence 78755 88999987 7999999999999999999998888887653 35556665 458999999999
Q ss_pred EEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 214 IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
|++|++.... ...+..|...+. .+.|+|++++ |++++.|+.|++||+++++.. ..+..
T Consensus 75 i~i~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~--------------~~~~~ 133 (289)
T cd00200 75 IRLWDLETGECVRTLTGHTSYVS----SVAFSPDGRI---LSSSSRDKTIKVWDVETGKCL--------------TTLRG 133 (289)
T ss_pred EEEEEcCcccceEEEeccCCcEE----EEEEcCCCCE---EEEecCCCeEEEEECCCcEEE--------------EEecc
Confidence 9999998721 344444543332 4889999774 677778999999999977632 23446
Q ss_pred eccceeEEEEcCCc-eEEEEc-CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc
Q 046773 293 FTEFVGRVRVTSHE-SAVACT-SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 293 h~~~v~~v~~s~~~-~~vas~-d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
|...+.++.++|++ .++++. ++.|++||+++++++.....|.......+++++++.+++++.++ .+++|+.
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-------~i~i~d~ 206 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG-------TIKLWDL 206 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC-------cEEEEEC
Confidence 77889999999855 444444 78999999998776655555543344445566666888888888 9999999
Q ss_pred CCCeeEEEEEecCCCeeEEEEeeCCCeEEEEe-CCeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcE
Q 046773 371 DTFEEVCRFSLRADRNVNVMGCMNQGYALMCV-EGVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNI 446 (453)
Q Consensus 371 ~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s-~~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~I 446 (453)
.+++.+..+..+...+..+.+++++..+++++ ++.|++||+.+++.+..+.+|... |. +++|+++.|+++ .|+.|
T Consensus 207 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 207 STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS-VTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred CCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCc-EEEEEECCCCCEEEEecCCCeE
Confidence 99888888877777788999998877777776 499999999999999999998877 77 567888999998 99999
Q ss_pred EEEe
Q 046773 447 HLWD 450 (453)
Q Consensus 447 klWD 450 (453)
+|||
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 9997
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=262.12 Aligned_cols=275 Identities=13% Similarity=0.135 Sum_probs=222.4
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE--EcCCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII--ITDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~--f~g~~LasgS~D~tIkvWd~~~ 221 (453)
|..+.|=+ ++||.++.-..+|++++.|-.|- .+.||.. .|-++. .+|..|+|||.|+++++|-++.
T Consensus 326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e--------~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTE--------AVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred heeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchh--------heeeeeecccCcEEEEecCCceEEEEEecC
Confidence 67777754 79999999999999999999997 7788764 566665 4577999999999999998843
Q ss_pred C-C----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeecc
Q 046773 222 V-A----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 222 ~-g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
. + .....+|+..+- .|+++..+-- .|+|+|.|.|+|+|++...+ .-. +.....-.+...|..
T Consensus 397 ~~~~~~~~a~~~gH~~svg----ava~~~~~as--ffvsvS~D~tlK~W~l~~s~~~~~------~~~~~~~~t~~aHdK 464 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVG----AVAGSKLGAS--FFVSVSQDCTLKLWDLPKSKETAF------PIVLTCRYTERAHDK 464 (775)
T ss_pred Ccchhhhhhhhcccccccc----eeeecccCcc--EEEEecCCceEEEecCCCcccccc------cceehhhHHHHhhcc
Confidence 1 1 233456766543 3677554433 48999999999999987622 100 010000023467888
Q ss_pred ceeEEEEcCCceEEE--EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 296 FVGRVRVTSHESAVA--CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 296 ~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
-||+|+++|+..++| |-|.|.|||+++..+.+.++.||..++...+|++....++++|+|. |+|||.++++
T Consensus 465 dIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~-------TvKIW~is~f 537 (775)
T KOG0319|consen 465 DINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK-------TVKIWSISTF 537 (775)
T ss_pred cccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCc-------eEEEEEeccc
Confidence 899999998775444 5689999999997777777899999887777777777999999999 9999999999
Q ss_pred eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEe--cCCCEEEEE-eCCcEEEE
Q 046773 374 EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV--GDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 374 ~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s--~d~~~lasg-~D~~IklW 449 (453)
.|+.+|.+|...|..+.|-.++.++++|++ |-||||+++|++|+.+|.+|.+. ||+|+ |++..+++| .|+.|-+|
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr-vWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR-VWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce-eEEEeecCccceeEecCCCeEEEEe
Confidence 999999999999999999999999999877 99999999999999999999999 99775 777889999 99999999
Q ss_pred e
Q 046773 450 D 450 (453)
Q Consensus 450 D 450 (453)
.
T Consensus 617 k 617 (775)
T KOG0319|consen 617 K 617 (775)
T ss_pred e
Confidence 4
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=235.51 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=188.1
Q ss_pred eEEEEecCCCCCccccccceEEEEEE--c-CCeEEEEeCCCCEEEEEeec----CC--cceEEeeecceecCceEEEEeC
Q 046773 175 LHVRTFRPQHSDRLGQFSRAVSGIII--T-DSQLIFATLDGDIHVAVIDD----VA--NETRTAHFGSVMDDGVLIDFTG 245 (453)
Q Consensus 175 ~~~~tl~gh~~~~~~~~s~~V~~i~f--~-g~~LasgS~D~tIkvWd~~~----~g--~~~~~~~~~~v~~~~~~v~Fs~ 245 (453)
...-||+||.. .|.+++. . .+.|+++|.|+++.+|++.. .| ...+++|...|. -++.++
T Consensus 6 ~l~~tl~gh~d--------~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~----dv~~s~ 73 (315)
T KOG0279|consen 6 VLRGTLEGHTD--------WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS----DVVLSS 73 (315)
T ss_pred eeeeeecCCCc--------eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEec----ceEEcc
Confidence 34568888765 5666654 3 56899999999999999865 34 455677766543 278899
Q ss_pred CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCC
Q 046773 246 CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRN 323 (453)
Q Consensus 246 dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t 323 (453)
||++ ..|+|.|+++|+||+++|+.. +.+.+|+.-|.+|+|+++. ++++|-|.||+|||.-.
T Consensus 74 dg~~---alS~swD~~lrlWDl~~g~~t--------------~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g 136 (315)
T KOG0279|consen 74 DGNF---ALSASWDGTLRLWDLATGEST--------------RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG 136 (315)
T ss_pred CCce---EEeccccceEEEEEecCCcEE--------------EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc
Confidence 9997 679999999999999999842 3477889999999999876 34556689999999985
Q ss_pred CceEEEEeeccCCeEEEEEEecCC----EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEE
Q 046773 324 QGMVLGERGYGRGLYVTSVDVNAE----AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYAL 399 (453)
Q Consensus 324 ~~~~~~~~g~~~~~~v~~~~~~g~----~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~ll 399 (453)
+|..+...+.+...|.|+.|+++ .++++|.|+ ++||||+++-+....+.+|..-+..+.++|||...+
T Consensus 137 -~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk-------tvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 137 -VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK-------TVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred -cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc-------eEEEEccCCcchhhccccccccEEEEEECCCCCEEe
Confidence 56666533332456666655554 688889998 999999999888888888888899999999988777
Q ss_pred EEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 400 MCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 400 s~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
+++- +.+.|||+..++++++|. |... |+ +|+|..-+|+.+.+..|||||+.
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~-a~~~-v~sl~fspnrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLE-AFDI-VNSLCFSPNRYWLCAATATSIKIWDLE 262 (315)
T ss_pred cCCCCceEEEEEccCCceeEecc-CCCe-EeeEEecCCceeEeeccCCceEEEecc
Confidence 6655 999999999999999995 5566 77 67788777877778889999985
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=232.48 Aligned_cols=272 Identities=14% Similarity=0.116 Sum_probs=208.7
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCC-eEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTR-LHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDG 212 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg-~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~ 212 (453)
||+ ..|++.+|+| ..+|||++|..|-||++..- +-..+++||.+ +|..+.+ |++.|+|+|.|+
T Consensus 45 gh~----geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg--------AVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 45 GHK----GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG--------AVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred CCc----ceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccc--------eeEeeeeccCCCEEEEecCCc
Confidence 786 2388999986 69999999999999997433 23567888754 7888877 578999999999
Q ss_pred CEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeee
Q 046773 213 DIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 213 tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l 290 (453)
|+++||+++ | +.-+++|+.-+. ++. |.-+-..++.|||.|+|+||||+++++... ++
T Consensus 113 ~v~~wD~~t-G~~~rk~k~h~~~vN----s~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~--------------t~ 171 (338)
T KOG0265|consen 113 TVRGWDAET-GKRIRKHKGHTSFVN----SLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIK--------------TF 171 (338)
T ss_pred eEEEEeccc-ceeeehhccccceee----ecC--ccccCCeEEEecCCCceEEEEeecccchhh--------------cc
Confidence 999999999 7 344455655432 233 332222368899999999999999877321 11
Q ss_pred eeeccceeEEEEc--CCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 291 TEFTEFVGRVRVT--SHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 291 ~~h~~~v~~v~~s--~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
...-.+.+|.|. .+..+++.-|+.||+||++.+.+++++.||...+.-.+++++|..+.+-+.|. ++++|
T Consensus 172 -~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~-------tvrvw 243 (338)
T KOG0265|consen 172 -ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN-------TVRVW 243 (338)
T ss_pred -ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccc-------eEEEE
Confidence 112345677775 45567777899999999999999998899887666566778888998888888 99999
Q ss_pred EcCC----CeeEEEEEecCCC----eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCE
Q 046773 369 RVDT----FEEVCRFSLRADR----NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRH 437 (453)
Q Consensus 369 ~~~t----g~~v~~l~~~~~~----v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~ 437 (453)
|..- ..|+..+.++... ......+|+++++-+++. +.+.+||..+-+++|.|+||.+. |+ .|.|...+
T Consensus 244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs-vn~~~Fhp~e~i 322 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS-VNEVDFHPTEPI 322 (338)
T ss_pred EecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCccee-EEEeeecCCCcE
Confidence 9763 2457777665422 334566788888777766 99999999999999999999999 88 78899999
Q ss_pred EEEE-eCCcEEEEec
Q 046773 438 VAAS-CGTNIHLWDF 451 (453)
Q Consensus 438 lasg-~D~~IklWDl 451 (453)
|.|+ .|++|.|=++
T Consensus 323 ils~~sdk~i~lgei 337 (338)
T KOG0265|consen 323 ILSCSSDKTIYLGEI 337 (338)
T ss_pred EEEeccCceeEeecc
Confidence 9998 9999987544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=264.44 Aligned_cols=265 Identities=14% Similarity=0.188 Sum_probs=196.9
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe--------EEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL--------HVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGD 213 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--------~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~t 213 (453)
|.+++|++ ++||||+.|++|||||+.+.. ....+.++ ..|.+++++ +..|++++.|++
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR---------SKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEeccc---------CceeeEEeccCCCCEEEEEeCCCe
Confidence 88999985 699999999999999986421 12233321 146667764 578999999999
Q ss_pred EEEEEeecCC-cceEEeeecceecCceEEEEeC-CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 214 IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTG-CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~-dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
|+|||+.+.. +..+..|.+.|. .|+|+| ++.+ |+|||.|++|+|||+++++.+ .++.
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~----~l~~~p~~~~~---L~Sgs~Dg~v~iWd~~~~~~~--------------~~~~ 615 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVW----SIDYSSADPTL---LASGSDDGSVKLWSINQGVSI--------------GTIK 615 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEE----EEEEcCCCCCE---EEEEcCCCEEEEEECCCCcEE--------------EEEe
Confidence 9999998722 445556766654 489997 6664 889999999999999988743 1233
Q ss_pred eeccceeEEEEcC-C--ceEEEEcCCcEEEEECCCCce-EEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEE
Q 046773 292 EFTEFVGRVRVTS-H--ESAVACTSSRVITFDLRNQGM-VLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIV 367 (453)
Q Consensus 292 ~h~~~v~~v~~s~-~--~~~vas~d~tIrlWDl~t~~~-~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~I 367 (453)
.+ ..+.++.|.+ + .+++++.|++|++||+++++. +....+|...+....|. +++.+++++.|+ +++|
T Consensus 616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~-------~iki 686 (793)
T PLN00181 616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN-------TLKL 686 (793)
T ss_pred cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC-------EEEE
Confidence 33 5688888853 3 356667789999999998653 33445665544434443 577899999999 9999
Q ss_pred EEcCCC------eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe-------------cccCCce
Q 046773 368 RRVDTF------EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF-------------RERIGEE 427 (453)
Q Consensus 368 w~~~tg------~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL-------------~gh~~~~ 427 (453)
||+..+ .++.++..|...+..+.+++++.++++++. ++|+|||..+...+.++ ..|...
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~- 765 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF- 765 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE-
Confidence 998743 567888888887888889999999888887 99999998776443222 122333
Q ss_pred EE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 428 VI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 428 V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
|. +++|++..|++| .||+|+|||+
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 66 567999999999 9999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=251.63 Aligned_cols=230 Identities=16% Similarity=0.240 Sum_probs=191.9
Q ss_pred eEEEEEE--cCCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC
Q 046773 194 AVSGIII--TDSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268 (453)
Q Consensus 194 ~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~ 268 (453)
.|.++.| +|+.|++++.|+++++|+....- .+.+.+|...|. .++|+|||++ |++|+.|++|||||++
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~----~~~fs~d~~~---l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS----DVAFSPDGSY---LLSGSDDKTLRIWDLK 233 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee----eeEECCCCcE---EEEecCCceEEEeecc
Confidence 5666655 57889999999999999984411 233445655543 4899999996 8899999999999994
Q ss_pred CC-cEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEec
Q 046773 269 AE-EVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN 345 (453)
Q Consensus 269 tg-~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~ 345 (453)
.. .++ +++++|+.+|+++.|+|++ ++++|.|++|||||+++++|...+.+|...+...+|.++
T Consensus 234 ~~~~~~--------------~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d 299 (456)
T KOG0266|consen 234 DDGRNL--------------KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD 299 (456)
T ss_pred CCCeEE--------------EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC
Confidence 43 443 5688999999999999877 345567899999999999998888899888888889999
Q ss_pred CCEEEEEeCCCccccCcceEEEEEcCCCe--eEEEEEecCCC--eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 346 AEAYIVVENRELENQNRRLAIVRRVDTFE--EVCRFSLRADR--NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 346 g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~--~v~~l~~~~~~--v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
+..++++|.|+ .++|||..+++ ++..+..+... +..+.|++++.+++++.. +++++||+..++++.++
T Consensus 300 ~~~l~s~s~d~-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 300 GNLLVSASYDG-------TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred CCEEEEcCCCc-------cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 99999999999 99999999998 66777666554 788999999999999888 89999999999999999
Q ss_pred cccCCceEE-----EEecCCCEEEEE-eCCcEEEEecC
Q 046773 421 RERIGEEVI-----AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 421 ~gh~~~~V~-----a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+|... +. .+.+++++|++| .|++|++||+.
T Consensus 373 ~~~~~~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 373 TGHSNL-VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred cccCCc-ceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 999886 33 225799999999 99999999975
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=239.79 Aligned_cols=230 Identities=16% Similarity=0.180 Sum_probs=178.1
Q ss_pred eEEEEEEcCC--eEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 194 AVSGIIITDS--QLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f~g~--~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
+|..+-|.+. .++++|.|.|||+||..+ | ...+++|+..+. .|+|+..|++ |+++|.|-++++||.++
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~t-g~~e~~LrGHt~sv~----di~~~a~Gk~---l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTET-GELERSLRGHTDSVF----DISFDASGKY---LATCSSDLSAKLWDFDT 181 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccc-hhhhhhhhcccccee----EEEEecCccE---EEecCCccchhheeHHH
Confidence 5666666654 577888999999999988 5 678899988765 4899999986 89999999999999987
Q ss_pred Cc-EEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC
Q 046773 270 EE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA 346 (453)
Q Consensus 270 g~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g 346 (453)
-. +. +.+.+|.--|.+|.|-|.+ +++++-|.+||.||+.|+-|+.++.+|...+.+..+.-||
T Consensus 182 ~~~c~--------------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 182 FFRCI--------------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred HHHHH--------------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence 32 22 2345666778999987654 4555668999999999999999998887644444444444
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee--------------CCC-eEEEEeC-CeEEEEE
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM--------------NQG-YALMCVE-GVIRVWE 410 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~--------------~~~-~lls~s~-~tIrlWD 410 (453)
..++++|.|. ++++|...+.+|...++.|..-+..+.+.| +++ ++.+++- +|||+||
T Consensus 248 ti~As~s~dq-------tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 248 TIIASCSNDQ-------TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred eEEEecCCCc-------eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 4455555555 999999999988777777765555444332 223 3444443 9999999
Q ss_pred CCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecCC
Q 046773 411 VEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFGA 453 (453)
Q Consensus 411 ~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~~ 453 (453)
+.||.||.||.||.++ |. +|+|-|++|+|. .|+++++||+.+
T Consensus 321 v~tg~cL~tL~ghdnw-Vr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 321 VSTGMCLFTLVGHDNW-VRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred ccCCeEEEEEecccce-eeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 9999999999999999 98 788999999998 999999999864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=219.51 Aligned_cols=269 Identities=14% Similarity=0.190 Sum_probs=211.1
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA- 223 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g- 223 (453)
|.++.|+ ++|..|++.|+|||||++..|.|++|+.||..+... .++.+|+.++++|+.|+-|.+||+++ |
T Consensus 20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD------~~~s~Dnskf~s~GgDk~v~vwDV~T-Gk 92 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLD------AALSSDNSKFASCGGDKAVQVWDVNT-GK 92 (307)
T ss_pred eEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeee------ccccccccccccCCCCceEEEEEccc-Ce
Confidence 7889997 589999999999999999999999999997654222 23457889999999999999999999 7
Q ss_pred -cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 224 -NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 224 -~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
++.+++|.+.|. .|.|+.++.. ++|||.|.++|+||.++...- | .+.|....+-|.+|.+
T Consensus 93 v~Rr~rgH~aqVN----tV~fNeesSV---v~SgsfD~s~r~wDCRS~s~e-------P-----iQildea~D~V~Si~v 153 (307)
T KOG0316|consen 93 VDRRFRGHLAQVN----TVRFNEESSV---VASGSFDSSVRLWDCRSRSFE-------P-----IQILDEAKDGVSSIDV 153 (307)
T ss_pred eeeecccccceee----EEEecCcceE---EEeccccceeEEEEcccCCCC-------c-----cchhhhhcCceeEEEe
Confidence 677788988875 5899988764 899999999999999886510 1 1345566788999999
Q ss_pred cCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec
Q 046773 303 TSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR 382 (453)
Q Consensus 303 s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~ 382 (453)
+...++.+|.|+++|.+|++.|+..--..| +.+...+|+++++..+.++.++ ++++-|-+||+.+....+|
T Consensus 154 ~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~s-------tlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 154 AEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDS-------TLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred cccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccc-------eeeecccchhHHHHHhccc
Confidence 998888889999999999998754222233 4566677888999999999999 9999999999988887777
Q ss_pred CCCeeEEEEe--eCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEE--ecCCCEEEEEeCCcEEEEe
Q 046773 383 ADRNVNVMGC--MNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAF--VGDDRHVAASCGTNIHLWD 450 (453)
Q Consensus 383 ~~~v~~~~~~--~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~--s~d~~~lasg~D~~IklWD 450 (453)
.+.-..+--| .....+++++. |.|.+||+..++.+..|+-|....|..+ .|.-..+.++.++.+..|-
T Consensus 225 kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 225 KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred ccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence 6543333322 23456667777 9999999999999999987765535544 4655556666667777774
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=251.29 Aligned_cols=270 Identities=16% Similarity=0.207 Sum_probs=218.8
Q ss_pred EEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCCCEEEEEeec
Q 046773 146 TCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 146 ~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~tIkvWd~~~ 221 (453)
.|..++|-| ..|.++-..+.|++||-.-|.|+..|..|.+ .|++|+|.+ ...+||+.|.+||||+..+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdG--------pVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG--------PVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCC--------ccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 367788887 4899999999999999999999999998765 689999975 4689999999999999987
Q ss_pred C-CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE
Q 046773 222 V-ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 222 ~-g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
. .+.++.+|...|. .+.|++.-.| +.|+|.|.||||||..++.++ -.|+||.-.|.|.
T Consensus 83 rrclftL~GHlDYVR----t~~FHheyPW---IlSASDDQTIrIWNwqsr~~i--------------avltGHnHYVMcA 141 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVR----TVFFHHEYPW---ILSASDDQTIRIWNWQSRKCI--------------AVLTGHNHYVMCA 141 (1202)
T ss_pred ceehhhhccccceeE----EeeccCCCce---EEEccCCCeEEEEeccCCceE--------------EEEecCceEEEee
Confidence 3 2678888987764 4899999887 679999999999999999864 3578899999999
Q ss_pred EEcCCc--eEEEEcCCcEEEEECCC--------C-------------------ceEEE--EeeccCCeEEEEEEecCCEE
Q 046773 301 RVTSHE--SAVACTSSRVITFDLRN--------Q-------------------GMVLG--ERGYGRGLYVTSVDVNAEAY 349 (453)
Q Consensus 301 ~~s~~~--~~vas~d~tIrlWDl~t--------~-------------------~~~~~--~~g~~~~~~v~~~~~~g~~l 349 (453)
+|+|.+ +++||-|.|||+||+.- + .++.. +.||..++.-.+|.|.--.+
T Consensus 142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 999844 45567789999999852 1 11111 25666666556676666788
Q ss_pred EEEeCCCccccCcceEEEEEcCCCe--eEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCc
Q 046773 350 IVVENRELENQNRRLAIVRRVDTFE--EVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~tg~--~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
+||+.|. .+|+|.++..+ ++.++.+|-+.|.++.|+|....+++.+. ++|||||++..+++++++--.+.
T Consensus 222 VSG~DDR-------qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR 294 (1202)
T KOG0292|consen 222 VSGADDR-------QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR 294 (1202)
T ss_pred EecCCcc-------eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCe
Confidence 9998888 99999987543 56677889888999999998888888887 99999999999999999644444
Q ss_pred eEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 427 EVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 427 ~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
.| +..|..+..|.|.|+.+.++.+.
T Consensus 295 -FW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 295 -FWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred -EEEEEecCCcceeeeecCCceEEEEEc
Confidence 55 66788999998877777777653
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=220.17 Aligned_cols=245 Identities=12% Similarity=0.094 Sum_probs=199.9
Q ss_pred EEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEE
Q 046773 177 VRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGL 253 (453)
Q Consensus 177 ~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~L 253 (453)
.|+|+||.. .|.++.+ |.+.|+|+|.|+.+.|||.-+.. .+.+......|+ ..+|+|.|++ +
T Consensus 48 rr~LkGH~~--------Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM----tCA~sPSg~~---V 112 (343)
T KOG0286|consen 48 RRTLKGHLN--------KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM----TCAYSPSGNF---V 112 (343)
T ss_pred EEEeccccc--------ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE----EEEECCCCCe---E
Confidence 489999865 5666765 56789999999999999976622 344444555555 4799999997 7
Q ss_pred EEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEEEcCCcEEEEECCCCceEEEEee
Q 046773 254 YAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVACTSSRVITFDLRNQGMVLGERG 332 (453)
Q Consensus 254 aSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~~~~g 332 (453)
|.|+-|+..-|+++.+..-- +.+.-=+.|.+|++++.+.+|-++. ++.+|+|.|+-|||+++++.+..+.|
T Consensus 113 AcGGLdN~Csiy~ls~~d~~--------g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAE--------GNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred EecCcCceeEEEeccccccc--------ccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC
Confidence 89999999999999876300 0011114688999999999998766 45667889999999999987776788
Q ss_pred ccCCeEEEEEEe-cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEE
Q 046773 333 YGRGLYVTSVDV-NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWE 410 (453)
Q Consensus 333 ~~~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD 410 (453)
|...+...+++| +++.+++++.|. +.+|||+..+.|+++|.+|+..|.++.|+|+|..++++++ +|.|++|
T Consensus 185 H~gDV~slsl~p~~~ntFvSg~cD~-------~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 185 HTGDVMSLSLSPSDGNTFVSGGCDK-------SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred CcccEEEEecCCCCCCeEEeccccc-------ceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 887777677778 789999999999 9999999999999999999999999999999999999999 9999999
Q ss_pred CCCCeEEEEecccC-CceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 411 VEGGEYMYSFRERI-GEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 411 ~~tG~~l~tL~gh~-~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
+...+.+..+.... ...|+ +||..||.|-+| .|.++.+||.
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 99999988886321 11255 788999999999 9999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=230.13 Aligned_cols=281 Identities=14% Similarity=0.154 Sum_probs=209.2
Q ss_pred CCCCCCCeEEEEEEecC--C-EEEEEeCCCcEEEEECCC--CeEEE--EecCCCC---CccccccceEEEEEEc--CCeE
Q 046773 138 DVDNPDGLTCRCLTLSD--L-YLACGFADGAVRLFDLTT--RLHVR--TFRPQHS---DRLGQFSRAVSGIIIT--DSQL 205 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~-~LaSGS~D~TIrlWD~~t--g~~~~--tl~gh~~---~~~~~~s~~V~~i~f~--g~~L 205 (453)
+|+.+ |.|.+++| + .||+|+.|-+.|+|++.. ..|.. .|+ |.. ..-.+-...|.+++.+ |..|
T Consensus 176 ~~~~~----V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-h~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 176 RHESE----VFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-HCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred cCCCc----eEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-hhhhhhcccCCccCCcceEEecCCCCeE
Confidence 47644 77888887 3 899999999999999864 33322 222 111 0001223578899987 8899
Q ss_pred EEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCccee
Q 046773 206 IFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVM 285 (453)
Q Consensus 206 asgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~ 285 (453)
|+|+.|+-+++|+.+..-+.++.-|.+.|. .|-.+.+|.+ |+||+.|+|+-|||..+|+...
T Consensus 251 atG~~~G~~riw~~~G~l~~tl~~HkgPI~----slKWnk~G~y---ilS~~vD~ttilwd~~~g~~~q----------- 312 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGNLISTLGQHKGPIF----SLKWNKKGTY---ILSGGVDGTTILWDAHTGTVKQ----------- 312 (524)
T ss_pred EEeecCcEEEEEecCchhhhhhhccCCceE----EEEEcCCCCE---EEeccCCccEEEEeccCceEEE-----------
Confidence 999999999999988622677777888876 5888999987 7899999999999999998321
Q ss_pred eeeeeeeeccceeEEE-EcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcce
Q 046773 286 GWRMLTEFTEFVGRVR-VTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRL 364 (453)
Q Consensus 286 ~w~~l~~h~~~v~~v~-~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~ 364 (453)
...-|..+--.|- .+.+..++.+.|+.|+|.-+.-.+-..++.||...+.+..++|.+..|+++|.|+ |
T Consensus 313 ---~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~-------T 382 (524)
T KOG0273|consen 313 ---QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG-------T 382 (524)
T ss_pred ---eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC-------e
Confidence 1112222211122 2344556666789999998876555566677665555555666688999999999 9
Q ss_pred EEEEEcCCCeeEEEEEecCCCeeEEEEeeCC---------CeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEe
Q 046773 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCMNQ---------GYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFV 432 (453)
Q Consensus 365 i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~---------~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s 432 (453)
+|||......++..|..|...+.++..+|.+ ..+++++. +|||+||++.|.|+++|..|+.. |. +|+
T Consensus 383 lkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p-VysvafS 461 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP-VYSVAFS 461 (524)
T ss_pred eEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc-eEEEEec
Confidence 9999988777777777777666666666532 34555555 99999999999999999999999 88 788
Q ss_pred cCCCEEEEE-eCCcEEEEecC
Q 046773 433 GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 433 ~d~~~lasg-~D~~IklWDl~ 452 (453)
|++++||+| -|+.|.||++.
T Consensus 462 ~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 462 PNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred CCCcEEEecCCCCeeEecccc
Confidence 999999999 99999999875
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-28 Score=241.21 Aligned_cols=275 Identities=13% Similarity=0.136 Sum_probs=208.6
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCC-CeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeC
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTT-RLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATL 210 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~t-g~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~ 210 (453)
.||+ ++ |.+++|-+ .+|+|++.|++|+|||+.. ++|+|||.||.. .|++++|+ |..+.|+|.
T Consensus 211 ~gH~--kg--vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k--------~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 211 SGHT--KG--VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK--------PVRDASFNNCGTSFLSASF 278 (503)
T ss_pred cCCc--cc--cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchh--------hhhhhhccccCCeeeeeec
Confidence 5999 55 89999977 5899999999999999987 999999999765 67888886 788999999
Q ss_pred CCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeee
Q 046773 211 DGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 211 D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l 290 (453)
|++||+||+++ |....+.|++.+.. .|-|.||++ +.+.+|..|+.|+.||+++++.+ +..
T Consensus 279 D~~lKlwDtET-G~~~~~f~~~~~~~---cvkf~pd~~--n~fl~G~sd~ki~~wDiRs~kvv--------------qeY 338 (503)
T KOG0282|consen 279 DRFLKLWDTET-GQVLSRFHLDKVPT---CVKFHPDNQ--NIFLVGGSDKKIRQWDIRSGKVV--------------QEY 338 (503)
T ss_pred ceeeeeecccc-ceEEEEEecCCCce---eeecCCCCC--cEEEEecCCCcEEEEeccchHHH--------------HHH
Confidence 99999999999 86677777776643 489999994 35778999999999999999842 122
Q ss_pred eeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEE
Q 046773 291 TEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIV 367 (453)
Q Consensus 291 ~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~I 367 (453)
..|-+.|+.+.|-+++ .+++|+|.++|+|+.+.+-.+... .-+.|......+.|.+..++.-|.|. -|-|
T Consensus 339 d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN-------~i~i 411 (503)
T KOG0282|consen 339 DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN-------YIAI 411 (503)
T ss_pred HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc-------eEEE
Confidence 3456788999986544 456667789999999986433222 22234445566778888887777777 6666
Q ss_pred EEcCCCe---eEEEEEecC--CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE-EEecCC-CEEE
Q 046773 368 RRVDTFE---EVCRFSLRA--DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI-AFVGDD-RHVA 439 (453)
Q Consensus 368 w~~~tg~---~v~~l~~~~--~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~-a~s~d~-~~la 439 (453)
..+...- .-..|.+|- .--..+.|+||+++|+++.+ |.+-+||..|-+.+.+|..|.+..|. .+.|-. ..||
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeE
Confidence 6543211 011233332 11345788999999999887 99999999999999999999877333 556744 4677
Q ss_pred EE-eCCcEEEEe
Q 046773 440 AS-CGTNIHLWD 450 (453)
Q Consensus 440 sg-~D~~IklWD 450 (453)
++ .||.||+||
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 77 999999997
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=211.36 Aligned_cols=273 Identities=15% Similarity=0.151 Sum_probs=200.0
Q ss_pred CCCCCCCCeEEEEEEecCC---EEEEEeCCCcEEEEECCC---CeEEEEecCCCCCccccccceEEEEEE--cCCeEEEE
Q 046773 137 SDVDNPDGLTCRCLTLSDL---YLACGFADGAVRLFDLTT---RLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFA 208 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~~---~LaSGS~D~TIrlWD~~t---g~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~Lasg 208 (453)
.||+ +- +..+++++- .|||+|.|++||||+... -.|..+|...| .++|+.+++ .|+.||+|
T Consensus 11 ~gh~--~r--~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~h-------krsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 11 SGHK--DR--VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGH-------KRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred cCCC--Cc--EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccc-------hheeeeeeecCCCcEEEEe
Confidence 4898 43 678888874 899999999999999985 56777775433 258999998 58899999
Q ss_pred eCCCCEEEEEeecC---CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCccee
Q 046773 209 TLDGDIHVAVIDDV---ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVM 285 (453)
Q Consensus 209 S~D~tIkvWd~~~~---g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~ 285 (453)
|.|.|+-||.-... ...++.+|...|- .|+|+++|.+ ||++|+|++|-||.+..+..|..
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK----~Vaws~sG~~---LATCSRDKSVWiWe~deddEfec---------- 142 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLEGHENEVK----CVAWSASGNY---LATCSRDKSVWIWEIDEDDEFEC---------- 142 (312)
T ss_pred eccceEEEeecCCCceeEEeeeecccccee----EEEEcCCCCE---EEEeeCCCeEEEEEecCCCcEEE----------
Confidence 99999999975541 1567777876653 5999999997 99999999999999986553321
Q ss_pred eeeeeeeeccceeEEEEcCC--ceEEEEcCCcEEEEECCCC---ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCcccc
Q 046773 286 GWRMLTEFTEFVGRVRVTSH--ESAVACTSSRVITFDLRNQ---GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQ 360 (453)
Q Consensus 286 ~w~~l~~h~~~v~~v~~s~~--~~~vas~d~tIrlWDl~t~---~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~ 360 (453)
.-.|+.|+.-|..|.++|. -++++|.|+|||+|+-..+ .|..++.+|...+...+|++.|+++++++.|+
T Consensus 143 -~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~---- 217 (312)
T KOG0645|consen 143 -IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG---- 217 (312)
T ss_pred -EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc----
Confidence 1357899999999999994 4566677899999987632 46677777766666667788889999999999
Q ss_pred CcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC------eEEEEec-ccCCceEEEE-
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG------EYMYSFR-ERIGEEVIAF- 431 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG------~~l~tL~-gh~~~~V~a~- 431 (453)
+++||-.-+.-. ..|.-.+..+..+ .+.++++++ +.|+|.--..+ +.+.... .|... |+++
T Consensus 218 ---tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d-VNsV~ 287 (312)
T KOG0645|consen 218 ---TVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD-VNSVQ 287 (312)
T ss_pred ---ceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccc-cceEE
Confidence 999997432210 0122224445555 344555555 99999976543 1222222 35555 8855
Q ss_pred -ecC-CCEEEEE-eCCcEEEEecC
Q 046773 432 -VGD-DRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 432 -s~d-~~~lasg-~D~~IklWDl~ 452 (453)
.|. ..+|+|+ .||+|++|.+.
T Consensus 288 w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 288 WNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EcCCCCCceeecCCCceEEEEEec
Confidence 474 4688888 99999999874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=226.93 Aligned_cols=265 Identities=11% Similarity=0.163 Sum_probs=209.3
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
|+||+++ |+.||+|++||.+|||+. +|..+.+|.-|.+ .|.++... |..|++++.|+|+.+||+.+
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~Hkg--------PI~slKWnk~G~yilS~~vD~ttilwd~~~- 307 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKG--------PIFSLKWNKKGTYILSGGVDGTTILWDAHT- 307 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCC--------ceEEEEEcCCCCEEEeccCCccEEEEeccC-
Confidence 8999998 689999999999999998 5667888876554 46668776 66799999999999999977
Q ss_pred C--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE
Q 046773 223 A--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 223 g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
| .+.+..|...- .-|..-.+.. +++.+.|+.|+|.-+.-.+- -.++.+|.++|+++
T Consensus 308 g~~~q~f~~~s~~~----lDVdW~~~~~----F~ts~td~~i~V~kv~~~~P--------------~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 308 GTVKQQFEFHSAPA----LDVDWQSNDE----FATSSTDGCIHVCKVGEDRP--------------VKTFIGHHGEVNAL 365 (524)
T ss_pred ceEEEeeeeccCCc----cceEEecCce----EeecCCCceEEEEEecCCCc--------------ceeeecccCceEEE
Confidence 5 23344454320 0133322222 57889999999998744331 14577899999999
Q ss_pred EEcCCceE--EEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEec---------CCEEEEEeCCCccccCcceEEEEE
Q 046773 301 RVTSHESA--VACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN---------AEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 301 ~~s~~~~~--vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~---------g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
+++|.+.+ ++|+|+|+|||.+....|.+.+..|.+.++....+|. +..+++++.|+ ++++||
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds-------tV~lwd 438 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS-------TVKLWD 438 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC-------eEEEEE
Confidence 99987754 4456789999999988887777677766655455554 34788999999 999999
Q ss_pred cCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCc
Q 046773 370 VDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTN 445 (453)
Q Consensus 370 ~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~ 445 (453)
+..|.++++|..|...|.++.|+|+++|+++++- +.|.||++.+|+..+.+.+- +. |. +++.+|..|... +|+.
T Consensus 439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~-Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GG-IFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred ccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-Ce-EEEEEEcCCCCEEEEEecCCC
Confidence 9999999999999888999999999999998887 99999999999999998654 34 55 677888888766 9999
Q ss_pred EEEEecC
Q 046773 446 IHLWDFG 452 (453)
Q Consensus 446 IklWDl~ 452 (453)
|.+-||.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9999874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=248.14 Aligned_cols=196 Identities=17% Similarity=0.215 Sum_probs=163.9
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||.-| |+...|+| ++|+|+|-|.|||||.+.|-.|+-.++||.. .|..++|. |-+.||||.|+|
T Consensus 449 GH~GP----Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~--------PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 449 GHSGP----VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA--------PVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred cCCCc----eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCc--------ceeeEEecCCceEEEecCCCce
Confidence 89977 88999987 5999999999999999999999999999865 35666676 557899999999
Q ss_pred EEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 214 IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
.++|..+..- .+.+.+|..+|. .|.|+|++.+ +|+||.|+|||+||+.+|... +.+.|
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~----cv~FHPNs~Y---~aTGSsD~tVRlWDv~~G~~V--------------RiF~G 575 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVD----CVSFHPNSNY---VATGSSDRTVRLWDVSTGNSV--------------RIFTG 575 (707)
T ss_pred eeeeecccCCchhhhcccccccc----eEEECCcccc---cccCCCCceEEEEEcCCCcEE--------------EEecC
Confidence 9999987621 344455655543 4899999986 899999999999999999843 23568
Q ss_pred eccceeEEEEcCCceEEEE--cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc
Q 046773 293 FTEFVGRVRVTSHESAVAC--TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 293 h~~~v~~v~~s~~~~~vas--~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
|+++|.+|+|+|.+..++| .|+.|+|||+.++..+.++.+|+..+...+|+.+|+.||+++.|. ++++||+
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn-------sV~lWD~ 648 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN-------SVRLWDL 648 (707)
T ss_pred CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC-------eEEEEEc
Confidence 9999999999998876665 468999999999887777788877777777888999999999999 9999998
Q ss_pred CCC
Q 046773 371 DTF 373 (453)
Q Consensus 371 ~tg 373 (453)
...
T Consensus 649 ~~~ 651 (707)
T KOG0263|consen 649 TKV 651 (707)
T ss_pred hhh
Confidence 753
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=232.40 Aligned_cols=273 Identities=14% Similarity=0.158 Sum_probs=218.2
Q ss_pred eEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCC-CCEEEEEe
Q 046773 145 LTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLD-GDIHVAVI 219 (453)
Q Consensus 145 v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D-~tIkvWd~ 219 (453)
+-|+|.+|.. +.||+|-..+...|+++....+++.|.--. ..|..++|+ |+-||.|+.- +.+-||+|
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~--------~~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD--------QKILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc--------ceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 4489999986 689999999999999999999999986311 256778887 9999998764 67889999
Q ss_pred ecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 220 DDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 220 ~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
.+.- +--.++|...+. .++++|||++ +|+|+.|+.|||||..+|-|+ +|+..|++.|.
T Consensus 338 qsEsYVlKQQgH~~~i~----~l~YSpDgq~---iaTG~eDgKVKvWn~~SgfC~--------------vTFteHts~Vt 396 (893)
T KOG0291|consen 338 QSESYVLKQQGHSDRIT----SLAYSPDGQL---IATGAEDGKVKVWNTQSGFCF--------------VTFTEHTSGVT 396 (893)
T ss_pred eccceeeecccccccee----eEEECCCCcE---EEeccCCCcEEEEeccCceEE--------------EEeccCCCceE
Confidence 8722 222345655443 5899999997 889999999999999999876 57889999999
Q ss_pred EEEEcCC--ceEEEEcCCcEEEEECCCCceEEEEeecc-CCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee
Q 046773 299 RVRVTSH--ESAVACTSSRVITFDLRNQGMVLGERGYG-RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE 375 (453)
Q Consensus 299 ~v~~s~~--~~~vas~d~tIrlWDl~t~~~~~~~~g~~-~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~ 375 (453)
.|+|+-+ .++++|-|+|||.||+....+-++++... -+..+.+++|+|+.+..|+.|. -.|.||+..||+.
T Consensus 397 ~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~------F~IfvWS~qTGql 470 (893)
T KOG0291|consen 397 AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS------FEIFVWSVQTGQL 470 (893)
T ss_pred EEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce------EEEEEEEeecCee
Confidence 9999744 45667789999999999988877764332 2445667788898877776554 2899999999999
Q ss_pred EEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC-eEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 376 VCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG-EYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG-~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+..+.+|+..|.++.|++.+..++++|- +|||+||+-.- ....+|+-.++..-.+|+|||+.||.+ -||.|.+||..
T Consensus 471 lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 471 LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 9999999999999999999988887776 99999999753 344566533343122788999999999 99999999974
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=217.89 Aligned_cols=274 Identities=11% Similarity=0.130 Sum_probs=199.5
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~ 212 (453)
..|+ ++ |.|++.+| +++|||+.|...-||++.+|+.+..+.||.. +|.++.| +|.+||||.+++
T Consensus 61 ~~H~--~s--vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKD--------SVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 61 DKHT--DS--VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKD--------SVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred hhcC--Cc--eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCC--------ceEEEEEccCceEEEecCCCc
Confidence 3798 55 56666665 6999999999999999999999999999764 6777776 588999999999
Q ss_pred CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
.|+||.+.+ | ......... ..+-.=+..+|.++. |+.|+.|+.|-+|.+.++... +++.|
T Consensus 129 ~v~v~~~st-g-~~~~~~~~e-~~dieWl~WHp~a~i---llAG~~DGsvWmw~ip~~~~~--------------kv~~G 188 (399)
T KOG0296|consen 129 KVLVFKVST-G-GEQWKLDQE-VEDIEWLKWHPRAHI---LLAGSTDGSVWMWQIPSQALC--------------KVMSG 188 (399)
T ss_pred cEEEEEccc-C-ceEEEeecc-cCceEEEEecccccE---EEeecCCCcEEEEECCCccee--------------eEecC
Confidence 999999988 4 111111011 111223678888875 889999999999999885421 34667
Q ss_pred eccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccC-CeEE------------------------------
Q 046773 293 FTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGR-GLYV------------------------------ 339 (453)
Q Consensus 293 h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~-~~~v------------------------------ 339 (453)
|..++++=.|.|++ ++.+..|++|++||+.|++.+++..+-.+ ....
T Consensus 189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV 268 (399)
T ss_pred CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEE
Confidence 88888888888776 45666789999999999987765431000 0000
Q ss_pred EEEEe--------------------cCC---EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCC
Q 046773 340 TSVDV--------------------NAE---AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQG 396 (453)
Q Consensus 340 ~~~~~--------------------~g~---~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~ 396 (453)
.++.+ ... ..+.++.|| +|-|||..+-..... =.|++.|..+.+-+ ..
T Consensus 269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG-------~i~iyD~a~~~~R~~-c~he~~V~~l~w~~-t~ 339 (399)
T KOG0296|consen 269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG-------TIAIYDLAASTLRHI-CEHEDGVTKLKWLN-TD 339 (399)
T ss_pred EecCCCCccccccchhhhhhhhhcccccccchhhcccccc-------eEEEEecccchhhee-ccCCCceEEEEEcC-cc
Confidence 01110 000 113445555 899999876432222 23667788888776 56
Q ss_pred eEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 397 YALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 397 ~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+++++.. |+||+||..||+++.++.||... |. +++||.++|+|+ .|++.+|++..
T Consensus 340 ~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDARTGQLKFTYTGHQMG-ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeeccCceEEeeeccccceEEEEecCchh-eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 7776665 99999999999999999999999 87 567999999999 99999999875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=233.33 Aligned_cols=264 Identities=14% Similarity=0.154 Sum_probs=213.3
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC--eEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS--QLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~--~LasgS~D~tIkvWd~~~~ 222 (453)
|.|++|-| ..+.++-|.|+|.|||-+|...++.|.--. ..|++..|-++ -+++||.|..|||+|.++.
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~--------~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE--------VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc--------cchhhheeeeccceEEEecCCceEEEEecccc
Confidence 78999987 589999999999999999999999996322 25666667665 4999999999999999983
Q ss_pred C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 223 A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 223 g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
. .+++..|...+. .|+.+|.-.+ +.|+|.|-+||+||-+.+=.. =+++.||+-.|.+|+
T Consensus 88 ekV~~FeAH~DyIR----~iavHPt~P~---vLtsSDDm~iKlW~we~~wa~-------------~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIR----SIAVHPTLPY---VLTSSDDMTIKLWDWENEWAC-------------EQTFEGHEHYVMQVA 147 (794)
T ss_pred eeeEEeecccccee----eeeecCCCCe---EEecCCccEEEEeeccCceee-------------eeEEcCcceEEEEEE
Confidence 2 677777876654 4788888765 679999999999998765311 145678889999999
Q ss_pred EcCC---ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC--EEEEEeCCCccccCcceEEEEEcCCCeeE
Q 046773 302 VTSH---ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE--AYIVVENRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 302 ~s~~---~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~--~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
|.|. ..+++|-|.|||+|.+.+..+..++.||..++.+.++-+-|+ .+++++.|- ++||||..|.+|+
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~-------tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL-------TIKVWDYQTKSCV 220 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc-------eEEEeecchHHHH
Confidence 9874 467778899999999999888888888887654433333333 689999888 9999999999999
Q ss_pred EEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEe--cCCCEEEEE-eCCcE
Q 046773 377 CRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV--GDDRHVAAS-CGTNI 446 (453)
Q Consensus 377 ~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s--~d~~~lasg-~D~~I 446 (453)
+++.+|.+.|..+.|+|.--.+++++. ||||||+..|-+...+|.=.-+. ||+++ +.++.|+.| ..+.|
T Consensus 221 ~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR-vW~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 221 QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER-VWCIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCce-EEEEeecCCCCeEEEeccCCcE
Confidence 999999999999999998778888888 99999999998877777544455 99887 677788889 44444
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=227.02 Aligned_cols=287 Identities=15% Similarity=0.209 Sum_probs=209.9
Q ss_pred CceeeEEeeCCCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeE--EEEecCCCCCccccccceEEEEEEc
Q 046773 126 RYTHFNLYFDPSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLH--VRTFRPQHSDRLGQFSRAVSGIIIT 201 (453)
Q Consensus 126 ~~~~~~~~~~~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~--~~tl~gh~~~~~~~~s~~V~~i~f~ 201 (453)
.+.||++.-...||- |. +.|+.|+. ++|++||.|-++|||+++.-+- .+.|.||.. .|.+..|.
T Consensus 131 ~~~pFvl~r~~~g~f--dd--i~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd--------~VvacfF~ 198 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHF--DD--ITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKD--------YVVACFFG 198 (893)
T ss_pred ccCcceEeeeecCCc--cc--eeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCc--------ceEEEEec
Confidence 466777766667998 55 78999986 6999999999999999988776 666778764 45555554
Q ss_pred --CCeEEEEeCCCCEEEEEeec----------------------CC-c--c---eEEe-----------------eec--
Q 046773 202 --DSQLIFATLDGDIHVAVIDD----------------------VA-N--E---TRTA-----------------HFG-- 232 (453)
Q Consensus 202 --g~~LasgS~D~tIkvWd~~~----------------------~g-~--~---~~~~-----------------~~~-- 232 (453)
...|++-|.||-+-+|-.+. .+ . + .+.. |.+
T Consensus 199 ~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~ 278 (893)
T KOG0291|consen 199 ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN 278 (893)
T ss_pred cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce
Confidence 44699999999999997761 00 0 0 0000 100
Q ss_pred -------------------------ceecCce-EEEEeCCCceeeEEEEeeCC-CeEEEeeCCCCc-EEecccccCCcce
Q 046773 233 -------------------------SVMDDGV-LIDFTGCSRYWVGLYAGLAG-RAFHIWDRQAEE-VFVGGDLTDHNTV 284 (453)
Q Consensus 233 -------------------------~v~~~~~-~v~Fs~dg~~~~~LaSgS~D-~tIrvWD~~tg~-~~~g~~l~~~~~v 284 (453)
.|....+ .++|+..|.| ||-|+.- +-+-||+..+.. .+
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDW---iA~g~~klgQLlVweWqsEsYVl----------- 344 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDW---IAFGCSKLGQLLVWEWQSESYVL----------- 344 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCE---EEEcCCccceEEEEEeeccceee-----------
Confidence 0000001 1444544554 3333332 345566655544 22
Q ss_pred eeeeeeeeeccceeEEEEcCCceEE--EEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHESAV--ACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~~~v--as~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
..++|...+++++++||+.++ ++.|+.|||||..++-|..++..|+.++...+|+..++.++++|.||
T Consensus 345 ----KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG------ 414 (893)
T KOG0291|consen 345 ----KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG------ 414 (893)
T ss_pred ----eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC------
Confidence 246899999999999997544 46789999999999999999888888888888899999999999999
Q ss_pred ceEEEEEcCCCeeEEEEEecCCCee--EEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEecccCCceEE--EEecCCC
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADRNV--NVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDR 436 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~v~--~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~ 436 (453)
++|.||+..+.+-++|+. |..++ .++..|.|..+.+++- -.|.||+++||+.|-.|.||.++ |. +|+|++.
T Consensus 415 -tVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP-Vs~l~f~~~~~ 491 (893)
T KOG0291|consen 415 -TVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP-VSGLSFSPDGS 491 (893)
T ss_pred -eEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc-ceeeEEccccC
Confidence 999999999988888864 33333 3444444554444442 68999999999999999999999 87 6889999
Q ss_pred EEEEE-eCCcEEEEec
Q 046773 437 HVAAS-CGTNIHLWDF 451 (453)
Q Consensus 437 ~lasg-~D~~IklWDl 451 (453)
.|||+ .|+|||+||+
T Consensus 492 ~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWDI 507 (893)
T ss_pred eEEeccccceEEEEEe
Confidence 99999 9999999996
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-26 Score=220.59 Aligned_cols=229 Identities=12% Similarity=0.144 Sum_probs=181.3
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
.|++++++ +.-++|||.|+||||||+.+ | .-++++|...+. -|+||+.-.+ |+|++.|+.||.||++.
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr----~vavS~rHpY---lFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVR----GVAVSKRHPY---LFSAGEDKQVKCWDLEY 224 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheee----eeeecccCce---EEEecCCCeeEEEechh
Confidence 78999987 46799999999999999999 6 455666654432 3788887765 89999999999999999
Q ss_pred CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~ 347 (453)
.+..+ -.-||-+.|.++.+.|.- ++.++.|.+|||||++|...++++.||...+.-..+.+..-
T Consensus 225 nkvIR--------------~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp 290 (460)
T KOG0285|consen 225 NKVIR--------------HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP 290 (460)
T ss_pred hhhHH--------------HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC
Confidence 88321 123677889999999754 45556688999999999888888888765443333444466
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCce
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEE 427 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~ 427 (453)
.++++|.|+ +|++||+..|+...+++-|.-.++.+..+|.-..+++++...||-|++..|+.++.|.||.+-
T Consensus 291 qvit~S~D~-------tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~i- 362 (460)
T KOG0285|consen 291 QVITGSHDS-------TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAI- 362 (460)
T ss_pred ceEEecCCc-------eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccce-
Confidence 789999999 999999999999999988877788888877544434444489999999999999999999998
Q ss_pred EEEEec-CCCEEEEE-eCCcEEEEecC
Q 046773 428 VIAFVG-DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 428 V~a~s~-d~~~lasg-~D~~IklWDl~ 452 (453)
|++++- ++..+++| ..+.+..||..
T Consensus 363 intl~~nsD~v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 363 INTLSVNSDGVLVSGGDNGSIMFWDWK 389 (460)
T ss_pred eeeeeeccCceEEEcCCceEEEEEecC
Confidence 998774 44477788 77899999863
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=222.68 Aligned_cols=302 Identities=18% Similarity=0.222 Sum_probs=212.3
Q ss_pred CCCCcCcchhHHHHHHHhhhhhcccccCceeeEEeeCCCCCCCCCCeEEEEEEecCC---EEEEEeCCCcEEEEECCCCe
Q 046773 99 GRTNLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSDL---YLACGFADGAVRLFDLTTRL 175 (453)
Q Consensus 99 ~~~~~~~~~Wk~~y~~~~~~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~~---~LaSGS~D~TIrlWD~~tg~ 175 (453)
|..|||++ .+||.+++++.|. .+++++||+.+++ ||. || |+||+=.++ .+||||.||.|||||+.+.+
T Consensus 30 p~lhPfe~--~rEy~RALNAtKl-eR~fakPFv~~L~--gHr--dG--V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~ 100 (433)
T KOG0268|consen 30 PALHPFER--AREYTRALNATKL-ERVFAKPFVGSLD--GHR--DG--VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE 100 (433)
T ss_pred CcCChhhh--HHHHHHHhhhHHH-HHHhhccchhhcc--ccc--cc--cchhhcCcchhhhhhccccCceEEEEehhhhh
Confidence 45688888 8999999999999 9999999999985 999 56 789998874 58999999999999999999
Q ss_pred EEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEE
Q 046773 176 HVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYA 255 (453)
Q Consensus 176 ~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaS 255 (453)
|+++|+.|.+ .|.+|+++....+|++.|+|||.|-++.+-.+++-+ ..+..+ |+.+-.+ ...||
T Consensus 101 ~~~~f~AH~G--------~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg--~s~~~g---Idh~~~~---~~FaT 164 (433)
T KOG0268|consen 101 CIRTFKAHEG--------LVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILG--KSVYLG---IDHHRKN---SVFAT 164 (433)
T ss_pred hhheeecccC--------ceeeEEecccceEEecCCcceeeeeccCCcceeeec--cccccc---ccccccc---ccccc
Confidence 9999998765 689999998889999999999999987632233221 111100 1111111 11344
Q ss_pred eeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEE-E-cCCcEEEEECCCCceEEEEee
Q 046773 256 GLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVA-C-TSSRVITFDLRNQGMVLGERG 332 (453)
Q Consensus 256 gS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~va-s-~d~tIrlWDl~t~~~~~~~~g 332 (453)
++ ..|.|||.+--.-+ .-+.| -.+.+.+++|+|-++ +++ | +|.+|-|+|++++.-++....
T Consensus 165 cG--e~i~IWD~~R~~Pv---------~smsw-----G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~ 228 (433)
T KOG0268|consen 165 CG--EQIDIWDEQRDNPV---------SSMSW-----GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL 228 (433)
T ss_pred cC--ceeeecccccCCcc---------ceeec-----CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee
Confidence 33 45899998654311 00112 136678899998653 333 3 678999999999865443211
Q ss_pred ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC-CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEE
Q 046773 333 YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-FEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWE 410 (453)
Q Consensus 333 ~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD 410 (453)
.. .-.-.|++|.+-.+++|+.|- .+...|... -+++.....|.+.|..+.|+|-|.-++++|- ++|||+.
T Consensus 229 ~m-RTN~IswnPeafnF~~a~ED~-------nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 229 TM-RTNTICWNPEAFNFVAANEDH-------NLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred ec-cccceecCccccceeeccccc-------cceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEee
Confidence 11 111245666444566666666 555555442 2456666777788899999999999888876 9999999
Q ss_pred CCCCeEEEEecccC---CceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 411 VEGGEYMYSFRERI---GEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 411 ~~tG~~l~tL~gh~---~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+..|..--+. |+ .. |. .++.|.++|+|| .|+.|+||.-.
T Consensus 301 ~~~~~SRdiY--htkRMq~-V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 301 VNHGHSRDIY--HTKRMQH-VFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cCCCcchhhh--hHhhhhe-eeEEEEeccccEEEecCCCcceeeeecc
Confidence 9877543222 22 22 44 568999999999 99999999743
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=228.54 Aligned_cols=283 Identities=20% Similarity=0.245 Sum_probs=217.4
Q ss_pred CCCCCCCCCCeEEEEEEecCC--EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCC
Q 046773 135 DPSDVDNPDGLTCRCLTLSDL--YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDG 212 (453)
Q Consensus 135 ~~~gh~~~d~v~v~~lafs~~--~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~ 212 (453)
+..||.+- |.++.||.+ .|+||+ .+.||||+..|.+|+||+.-. .. --+.+.+.++.+++|...|
T Consensus 368 ~~~GHR~d----VRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~------l~~~Fvpgd~~Iv~G~k~G 434 (888)
T KOG0306|consen 368 EIGGHRSD----VRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YI------LASKFVPGDRYIVLGTKNG 434 (888)
T ss_pred eeccchhh----eeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cE------EEEEecCCCceEEEeccCC
Confidence 34589854 889999875 444444 568999999999999999632 10 0122445678899999999
Q ss_pred CEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee-e-e
Q 046773 213 DIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW-R-M 289 (453)
Q Consensus 213 tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w-~-~ 289 (453)
.+.|.|+.+.- ..+.+.|.+.+. .++.+||++. +++||.|+|||+||+.--.- .+++- +-+..+ | .
T Consensus 435 el~vfdlaS~~l~Eti~AHdgaIW----si~~~pD~~g---~vT~saDktVkfWdf~l~~~-~~gt~---~k~lsl~~~r 503 (888)
T KOG0306|consen 435 ELQVFDLASASLVETIRAHDGAIW----SISLSPDNKG---FVTGSADKTVKFWDFKLVVS-VPGTQ---KKVLSLKHTR 503 (888)
T ss_pred ceEEEEeehhhhhhhhhcccccee----eeeecCCCCc---eEEecCCcEEEEEeEEEEec-cCccc---ceeeeeccce
Confidence 99999998722 566778888776 4899999986 77999999999999752110 00000 000000 1 1
Q ss_pred eeeeccceeEEEEcCCceEEEE--cCCcEEEEECCCCceEEEEeeccCCeEEEEE--EecCCEEEEEeCCCccccCcceE
Q 046773 290 LTEFTEFVGRVRVTSHESAVAC--TSSRVITFDLRNQGMVLGERGYGRGLYVTSV--DVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~~vas--~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~--~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
.-..++-|.||++||++.+++- -|+||+++=+.|-+--+.+ .+|..+|.|+ +||...++++|.|. ++
T Consensus 504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL--YGHkLPV~smDIS~DSklivTgSADK-------nV 574 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL--YGHKLPVLSMDISPDSKLIVTGSADK-------NV 574 (888)
T ss_pred EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee--cccccceeEEeccCCcCeEEeccCCC-------ce
Confidence 1245688999999999876664 4899999999986544444 4456677775 57788999999999 99
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS- 441 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg- 441 (453)
|||=++=|.|-..+-.|.+.|.++.|.|....+.+|+- +.||-||-+.-+++++|.||+.. || +++|+|.+++|+
T Consensus 575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e-v~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE-VWCLAVSPNGSFVVSSS 653 (888)
T ss_pred EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe-eeeeEEcCCCCeEEecc
Confidence 99999999998888889999999999997766677776 99999999999999999999999 99 567999999999
Q ss_pred eCCcEEEEec
Q 046773 442 CGTNIHLWDF 451 (453)
Q Consensus 442 ~D~~IklWDl 451 (453)
.|.+|++|.-
T Consensus 654 hD~sIRlwE~ 663 (888)
T KOG0306|consen 654 HDKSIRLWER 663 (888)
T ss_pred CCceeEeeec
Confidence 9999999963
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=221.79 Aligned_cols=267 Identities=14% Similarity=0.120 Sum_probs=200.5
Q ss_pred EEEEEe--cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTL--SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~laf--s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~ 222 (453)
|..+.+ +|+.|+|||+-|..-||+..+..--..+..|.. .|+++.. ++..++||+.|+.||+|+-+-.
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs--------~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDS--------PVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcc--------cceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 444555 557999999999999999865543333455543 6788765 5889999999999999986542
Q ss_pred CcceEEeee-cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 223 ANETRTAHF-GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 223 g~~~~~~~~-~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
-+.....|. ..|. .++|||+... .+|+|.|++|+|||+.-.+. + ..|+||---|.+|.
T Consensus 171 nVk~~~ahh~eaIR----dlafSpnDsk---F~t~SdDg~ikiWdf~~~ke---------e-----~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIR----DLAFSPNDSK---FLTCSDDGTIKIWDFRMPKE---------E-----RVLRGHGWDVKSVD 229 (464)
T ss_pred hhHHhhHhhhhhhh----eeccCCCCce---eEEecCCCeEEEEeccCCch---------h-----heeccCCCCcceec
Confidence 233344443 3332 3899987543 67999999999999876541 0 12456666688888
Q ss_pred EcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 302 VTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 302 ~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
.+|.. ++++|.|..||+||.+++.|+.++.+|.+.+.-..|.++++.|+++|.|. .+++.|+.+-++++++
T Consensus 230 WHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~-------~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 230 WHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-------SCKVFDIRTMKELFTY 302 (464)
T ss_pred cCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc-------eEEEEehhHhHHHHHh
Confidence 88754 34455678999999999999887755544444444677788999999999 9999999988888889
Q ss_pred EecCCCeeEEEEeeCCCeEE-EEeC-CeEEEEECCCCeEEEEe-cccCCceEEEE--ecCCCEEEEE-eCCcEEEEe
Q 046773 380 SLRADRNVNVMGCMNQGYAL-MCVE-GVIRVWEVEGGEYMYSF-RERIGEEVIAF--VGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~ll-s~s~-~tIrlWD~~tG~~l~tL-~gh~~~~V~a~--s~d~~~lasg-~D~~IklWD 450 (453)
+.|...+.++..+|--..++ +++. +.|..|.+-.-+.+-.+ .+|... ||++ .|=|.+|++| .|+++|.|.
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~-iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGE-IWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccc-eeeeeccccceeEeecCCCcceeeec
Confidence 99988899999988444444 4444 99999999866766666 467777 9965 5999999999 999999995
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=202.38 Aligned_cols=235 Identities=16% Similarity=0.153 Sum_probs=185.1
Q ss_pred EEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeE
Q 046773 177 VRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVG 252 (453)
Q Consensus 177 ~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~ 252 (453)
+++|..+.+ +|+++-| +|...++++.|+|||+||... | ++++.+|...|.+ ++.+.|...
T Consensus 10 ~~~l~~~qg--------aV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktYsghG~EVlD----~~~s~Dnsk--- 73 (307)
T KOG0316|consen 10 LSILDCAQG--------AVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTYSGHGHEVLD----AALSSDNSK--- 73 (307)
T ss_pred ceeeccccc--------ceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeeecCCCceeee----ccccccccc---
Confidence 456666543 6888877 588999999999999999876 5 7888888666542 444455432
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEE--cCCcEEEEECCCCce--EE
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVAC--TSSRVITFDLRNQGM--VL 328 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas--~d~tIrlWDl~t~~~--~~ 328 (453)
++||+.|+.|.+||++||+.. +-+++|.+.||.|+|+....+++| -|.+||+||-++... +.
T Consensus 74 f~s~GgDk~v~vwDV~TGkv~--------------Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGKVD--------------RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred cccCCCCceEEEEEcccCeee--------------eecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence 789999999999999999954 236788899999999987765554 478999999987632 12
Q ss_pred EEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEE
Q 046773 329 GERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIR 407 (453)
Q Consensus 329 ~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIr 407 (453)
.+. .....|.+++..+..++.+|.|| ++|.+|+..|+.....-++| |.++.+++++...++++- ++||
T Consensus 140 ild--ea~D~V~Si~v~~heIvaGS~DG-------tvRtydiR~G~l~sDy~g~p--it~vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 140 ILD--EAKDGVSSIDVAEHEIVAGSVDG-------TVRTYDIRKGTLSSDYFGHP--ITSVSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred hhh--hhcCceeEEEecccEEEeeccCC-------cEEEEEeecceeehhhcCCc--ceeEEecCCCCEEEEeeccceee
Confidence 221 11234688899999999999999 99999999887655555555 889999999988887776 9999
Q ss_pred EEECCCCeEEEEecccCCceEE---EEecCCCEEEEE-eCCcEEEEecC
Q 046773 408 VWEVEGGEYMYSFRERIGEEVI---AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 408 lWD~~tG~~l~tL~gh~~~~V~---a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|-|-+||+.|..+.||..-... +|.....++++| +||.|.+||+-
T Consensus 209 LlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred ecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEec
Confidence 9999999999999999765222 566677889999 99999999973
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=213.23 Aligned_cols=273 Identities=19% Similarity=0.245 Sum_probs=208.5
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
+.|-.||| .+|+|||.|+-|.+||..||+..+-|+-...+.|-....+|.+|.|+ ..+|||||.|+.||||.+.+
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t- 294 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET- 294 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-
Confidence 67899987 59999999999999999999988887654433333344689999996 56899999999999999998
Q ss_pred CcceE---EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 223 ANETR---TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 223 g~~~~---~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
|...+ +.|+..|. .+.||.|+.. +.|+|.|.||||--+++|+++ +.++||++.|+.
T Consensus 295 G~ClRrFdrAHtkGvt----~l~FSrD~Sq---iLS~sfD~tvRiHGlKSGK~L--------------KEfrGHsSyvn~ 353 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVT----CLSFSRDNSQ---ILSASFDQTVRIHGLKSGKCL--------------KEFRGHSSYVNE 353 (508)
T ss_pred chHHHHhhhhhccCee----EEEEccCcch---hhcccccceEEEeccccchhH--------------HHhcCccccccc
Confidence 62222 24665543 5899999875 679999999999999999965 346789999999
Q ss_pred EEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEE---ecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 300 VRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVD---VNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 300 v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~---~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
+.|++++ ++++|+|++||+|+..|.+|+.+++.-+....|+++- .+++.++...... ++-|-++ .|+
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn-------tv~imn~-qGQ 425 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN-------TVYIMNM-QGQ 425 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC-------eEEEEec-cce
Confidence 9998765 6788899999999999999988764333344555543 3456777776666 6666555 367
Q ss_pred eEEEEEecC---CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEE--ecCCCEEEEE-eCCcEE
Q 046773 375 EVCRFSLRA---DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAF--VGDDRHVAAS-CGTNIH 447 (453)
Q Consensus 375 ~v~~l~~~~---~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~--s~d~~~lasg-~D~~Ik 447 (453)
-+.+|.... ........+|-|.++...+. +.+....+.+|+.-++|.-|... |..+ .|-.+.|||- +|+.+|
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd-vIGl~HHPHqNllAsYsEDgllK 504 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD-VIGLTHHPHQNLLASYSEDGLLK 504 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc-ccccccCcccchhhhhcccchhh
Confidence 777764321 11334455666776654454 99999999999999999999777 6544 4777888987 999999
Q ss_pred EEe
Q 046773 448 LWD 450 (453)
Q Consensus 448 lWD 450 (453)
||.
T Consensus 505 LWk 507 (508)
T KOG0275|consen 505 LWK 507 (508)
T ss_pred hcC
Confidence 995
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-25 Score=226.07 Aligned_cols=198 Identities=14% Similarity=0.153 Sum_probs=164.2
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC--eEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS--QLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~--~LasgS~D~tIkvWd~~~~ 222 (453)
|++..|=+ +.+++||+|..|||++..|++.+++|..|.. .+++|+..+. .+.|+|.|-+||+|||+..
T Consensus 58 vRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D--------yIR~iavHPt~P~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 58 VRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD--------YIRSIAVHPTLPYVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred hhhheeeeccceEEEecCCceEEEEecccceeeEEeecccc--------ceeeeeecCCCCeEEecCCccEEEEeeccCc
Confidence 56666654 5899999999999999999999999998753 6888887654 6999999999999999872
Q ss_pred --CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE
Q 046773 223 --ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 223 --g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
..+++.+|+..|+ .|+|.|+.. +..||+|-|+|||||.+.+... + -||.+|..-||+|
T Consensus 130 wa~~qtfeGH~HyVM----qv~fnPkD~--ntFaS~sLDrTVKVWslgs~~~---------n-----fTl~gHekGVN~V 189 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVM----QVAFNPKDP--NTFASASLDRTVKVWSLGSPHP---------N-----FTLEGHEKGVNCV 189 (794)
T ss_pred eeeeeEEcCcceEEE----EEEecCCCc--cceeeeeccccEEEEEcCCCCC---------c-----eeeeccccCcceE
Confidence 1578889988877 489999865 3589999999999999976541 1 3577898999999
Q ss_pred EEcCCc----eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeE
Q 046773 301 RVTSHE----SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 301 ~~s~~~----~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
.+-+.+ ++++++|.+|||||-+|..|+.++.||++.+...+|.|.=-.++++|.|| |+|||...|.+..
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDG-------TvriWhs~Ty~lE 262 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDG-------TVRIWNSKTYKLE 262 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCc-------cEEEecCcceehh
Confidence 986554 46667778999999999999999999999888888888777899999999 9999998886543
Q ss_pred EEE
Q 046773 377 CRF 379 (453)
Q Consensus 377 ~~l 379 (453)
.++
T Consensus 263 ~tL 265 (794)
T KOG0276|consen 263 KTL 265 (794)
T ss_pred hhh
Confidence 333
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=234.63 Aligned_cols=228 Identities=14% Similarity=0.121 Sum_probs=175.4
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~~ 220 (453)
+.+++|++ .+|||+++|++|+|||+.+++++.++.+|.. .|.+++|+ +..|+|||.|++|++||+.
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~--------~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK--------RVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC--------CEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 45677753 6899999999999999999999999998764 58888885 4689999999999999998
Q ss_pred cCC--cceEEeeecceecCceEEEEe-CCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccce
Q 046773 221 DVA--NETRTAHFGSVMDDGVLIDFT-GCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 221 ~~g--~~~~~~~~~~v~~~~~~v~Fs-~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
+ + +.++..+ ..+ ..+.|+ ++|+. |++|+.|++|++||+++++.. ..++.+|...|
T Consensus 607 ~-~~~~~~~~~~-~~v----~~v~~~~~~g~~---latgs~dg~I~iwD~~~~~~~-------------~~~~~~h~~~V 664 (793)
T PLN00181 607 Q-GVSIGTIKTK-ANI----CCVQFPSESGRS---LAFGSADHKVYYYDLRNPKLP-------------LCTMIGHSKTV 664 (793)
T ss_pred C-CcEEEEEecC-CCe----EEEEEeCCCCCE---EEEEeCCCeEEEEECCCCCcc-------------ceEecCCCCCE
Confidence 7 4 2233222 111 247885 56775 889999999999999876521 13456888899
Q ss_pred eEEEEcCCc-eEEEEcCCcEEEEECCCC------ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc
Q 046773 298 GRVRVTSHE-SAVACTSSRVITFDLRNQ------GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 298 ~~v~~s~~~-~~vas~d~tIrlWDl~t~------~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
.+|+|.+.. ++++|.|++|+|||+.++ .++..+.+|.....+.++++++..+++++.|+ +++||+.
T Consensus 665 ~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~-------~v~iw~~ 737 (793)
T PLN00181 665 SYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN-------EVFVYHK 737 (793)
T ss_pred EEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC-------EEEEEEC
Confidence 999997444 566678899999999853 34555677776666778889999999999999 9999998
Q ss_pred CCCeeEEEEEe-------------cCCCeeEEEEeeCCCeEEEEeC-CeEEEEEC
Q 046773 371 DTFEEVCRFSL-------------RADRNVNVMGCMNQGYALMCVE-GVIRVWEV 411 (453)
Q Consensus 371 ~tg~~v~~l~~-------------~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~ 411 (453)
..+..+..+.+ +...|..+.+++++..+++++. |+|+|||+
T Consensus 738 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 738 AFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 76654433221 2234788889999999888887 99999997
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=205.95 Aligned_cols=229 Identities=14% Similarity=0.137 Sum_probs=180.9
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
.|..+.|+ |..+|||+.|+.|.+|++.... .-.+++|.+.|.. |.|.+|+.. |+|+|.|++|+.||++|
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~----l~~~~d~s~---i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVME----LHGMRDGSH---ILSCGTDKTVRGWDAET 121 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEe----eeeccCCCE---EEEecCCceEEEEeccc
Confidence 56667765 6789999999999999986532 4567789888763 899999985 88999999999999999
Q ss_pred CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA 346 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g 346 (453)
|++.. .+++|++.||++..+-.+ +.++++|+|+||||+++..++++..... +....+|.-.+
T Consensus 122 G~~~r--------------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s 186 (338)
T KOG0265|consen 122 GKRIR--------------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-QLTAVGFKDTS 186 (338)
T ss_pred ceeee--------------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-eEEEEEecccc
Confidence 99532 256888999998754333 3344667999999999988877652221 12223344456
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC----CeEEEEec
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG----GEYMYSFR 421 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t----G~~l~tL~ 421 (453)
+.+++|.-|+ .|+|||....+++.++.+|.+.|..+..++++.++++=+= +++|+||++- -+|+..+.
T Consensus 187 ~qv~sggIdn-------~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~ 259 (338)
T KOG0265|consen 187 DQVISGGIDN-------DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ 259 (338)
T ss_pred cceeeccccC-------ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee
Confidence 7788888888 9999999988899999999999999999999998886554 9999999973 47899999
Q ss_pred ccCCc-eEE----EEecCCCEEEEE-eCCcEEEEec
Q 046773 422 ERIGE-EVI----AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 422 gh~~~-~V~----a~s~d~~~lasg-~D~~IklWDl 451 (453)
||... ..+ +.+|+++.+..| .|+.|.+||.
T Consensus 260 g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 260 GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred cchhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence 88533 122 668999999988 9999999995
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=201.95 Aligned_cols=271 Identities=15% Similarity=0.141 Sum_probs=204.5
Q ss_pred CCCCCCCCeEEEEEEecC-----CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEe
Q 046773 137 SDVDNPDGLTCRCLTLSD-----LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFAT 209 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~-----~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS 209 (453)
.||+-| |..|+||+ -+|+|++.|+.-.|=+=+||.-+.||.||.+ +|.+...+ ..+.||++
T Consensus 11 ~ghtrp----vvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkg--------avw~~~l~~na~~aasaa 78 (334)
T KOG0278|consen 11 HGHTRP----VVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKG--------AVWSATLNKNATRAASAA 78 (334)
T ss_pred cCCCcc----eeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCc--------ceeeeecCchhhhhhhhc
Confidence 499988 88999997 2799999999999999999999999999876 56655555 34678999
Q ss_pred CCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee
Q 046773 210 LDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW 287 (453)
Q Consensus 210 ~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w 287 (453)
.|-|.||||.-+ | ++.+. | -+++ ..++|+.|.++ |.+|+.++-+||+|++..+-. |
T Consensus 79 adftakvw~a~t-gdelhsf~-h-khiv---k~~af~~ds~~---lltgg~ekllrvfdln~p~Ap-------p------ 136 (334)
T KOG0278|consen 79 ADFTAKVWDAVT-GDELHSFE-H-KHIV---KAVAFSQDSNY---LLTGGQEKLLRVFDLNRPKAP-------P------ 136 (334)
T ss_pred ccchhhhhhhhh-hhhhhhhh-h-hhee---eeEEecccchh---hhccchHHHhhhhhccCCCCC-------c------
Confidence 999999999877 5 34332 2 1222 14899999986 789999999999999886610 0
Q ss_pred eeeeeeccceeEEEEc-CCceEEE-EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 288 RMLTEFTEFVGRVRVT-SHESAVA-CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s-~~~~~va-s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
..+.+|+..|..|-|- .+..+++ +.|++|||||.+|+...+++.... .+....++.+|+.+. .+..+ .|
T Consensus 137 ~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~ilT-ia~gs-------sV 207 (334)
T KOG0278|consen 137 KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRILT-IAYGS-------SV 207 (334)
T ss_pred hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCEEE-EecCc-------ee
Confidence 1245777778777763 5555555 456899999999998777653322 222344667776554 45555 89
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe-cccCCceEE--EEecCCCEEEEE
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF-RERIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL-~gh~~~~V~--a~s~d~~~lasg 441 (453)
+.||..+...+..... |-.|.+...+|+-..++.++. .-++.+|..||+.+..+ .||.+. |. .|+|||..-|||
T Consensus 208 ~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp-VhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP-VHCVRFSPDGELYASG 285 (334)
T ss_pred EEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc-eEEEEECCCCceeecc
Confidence 9999998877666543 334566666676655555555 88999999999999886 899999 87 678999999999
Q ss_pred -eCCcEEEEecC
Q 046773 442 -CGTNIHLWDFG 452 (453)
Q Consensus 442 -~D~~IklWDl~ 452 (453)
+||+|+||...
T Consensus 286 SEDGTirlWQt~ 297 (334)
T KOG0278|consen 286 SEDGTIRLWQTT 297 (334)
T ss_pred CCCceEEEEEec
Confidence 99999999864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=211.15 Aligned_cols=273 Identities=14% Similarity=0.153 Sum_probs=193.9
Q ss_pred CCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeE---EEEecCCCCCccccccceEEEEEE--cCCeEEEEeC
Q 046773 138 DVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLH---VRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATL 210 (453)
Q Consensus 138 gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~---~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~ 210 (453)
.|+ |.| +=++|| |+||||+|.|.|.-||++.--.. .+||.||+. .|..|.+ |+++|++++.
T Consensus 222 ~ht--dEV--Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~--------~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 222 DHT--DEV--WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ--------PVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred hCC--CcE--EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccC--------ceEEEEECCCCCeEEecCc
Confidence 788 565 457776 58999999999999999865544 899999875 5777765 5678999999
Q ss_pred CCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 211 DGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 211 D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
|..+++||+.+ | ....-.+...+ ...+.+..|||.. +++||.|++|-.||......- .|.-
T Consensus 290 ~e~~~lwDv~t-gd~~~~y~~~~~~--S~~sc~W~pDg~~---~V~Gs~dr~i~~wdlDgn~~~------------~W~g 351 (519)
T KOG0293|consen 290 DEVLSLWDVDT-GDLRHLYPSGLGF--SVSSCAWCPDGFR---FVTGSPDRTIIMWDLDGNILG------------NWEG 351 (519)
T ss_pred hHheeeccCCc-chhhhhcccCcCC--CcceeEEccCCce---eEecCCCCcEEEecCCcchhh------------cccc
Confidence 99999999998 5 21111122111 1124789999986 789999999999999654421 1322
Q ss_pred eeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC-EEEEEeCCCccccCcceEE
Q 046773 290 LTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE-AYIVVENRELENQNRRLAI 366 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~ 366 (453)
.+ ...|..+++++++ +++.+.|..|++.+.++..+...... ...+.+|+.+.+ +++..+-.. ..++
T Consensus 352 vr--~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise---~~~its~~iS~d~k~~LvnL~~------qei~ 420 (519)
T KOG0293|consen 352 VR--DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE---EQPITSFSISKDGKLALVNLQD------QEIH 420 (519)
T ss_pred cc--cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc---cCceeEEEEcCCCcEEEEEccc------CeeE
Confidence 11 1347778888766 45557788999999998654321111 123566665543 455554332 2899
Q ss_pred EEEcCCCeeEEEEEecCCCe---eEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEe--c-CCCEEE
Q 046773 367 VRRVDTFEEVCRFSLRADRN---VNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV--G-DDRHVA 439 (453)
Q Consensus 367 Iw~~~tg~~v~~l~~~~~~v---~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s--~-d~~~la 439 (453)
+||+.....++.+.+|.... ++..+--+..+++++|. +.|+||+..+|+.+.+|.||... |++++ | |...+|
T Consensus 421 LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~-vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 421 LWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT-VNCVSWNPADPEMFA 499 (519)
T ss_pred EeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce-eeEEecCCCCHHHhh
Confidence 99999766666666665443 33333335567777777 99999999999999999999998 99766 5 556789
Q ss_pred EE-eCCcEEEEecC
Q 046773 440 AS-CGTNIHLWDFG 452 (453)
Q Consensus 440 sg-~D~~IklWDl~ 452 (453)
|| .|||||||-.+
T Consensus 500 SasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 500 SASDDGTIRIWGPS 513 (519)
T ss_pred ccCCCCeEEEecCC
Confidence 99 99999999754
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=192.80 Aligned_cols=259 Identities=13% Similarity=0.145 Sum_probs=185.6
Q ss_pred cccCceeeEEeeCCCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeE--EEEecCCCCCccccccceEEEE
Q 046773 123 RTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLH--VRTFRPQHSDRLGQFSRAVSGI 198 (453)
Q Consensus 123 ~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~--~~tl~gh~~~~~~~~s~~V~~i 198 (453)
..|.|..++- |. |+- |..|...+ +.||.|++- .|||+|+.++.. +.+|.+|.+ -|.++
T Consensus 28 ~tG~C~rTiq------h~--dsq-VNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~k--------NVtaV 89 (311)
T KOG0315|consen 28 LTGICSRTIQ------HP--DSQ-VNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTK--------NVTAV 89 (311)
T ss_pred hcCeEEEEEe------cC--ccc-eeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCC--------ceEEE
Confidence 4566665552 43 332 66666665 578888755 799999999974 899999866 35556
Q ss_pred EE--cCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecc
Q 046773 199 II--TDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGG 276 (453)
Q Consensus 199 ~f--~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~ 276 (453)
.| +|+-++|||.|+|+||||+..+..+..--|...|. .|..+|+-- -|++|..++.|||||+....+-. .
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn----~vvlhpnQt---eLis~dqsg~irvWDl~~~~c~~-~ 161 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVN----TVVLHPNQT---ELISGDQSGNIRVWDLGENSCTH-E 161 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcc----eEEecCCcc---eEEeecCCCcEEEEEccCCcccc-c
Confidence 65 69999999999999999998743222111222222 355666633 38899999999999998764210 0
Q ss_pred cccCCcceeeeeeeeeeccceeEEEEcCCceEEEE--cCCcEEEEECCCCce---EEE-EeeccCCeEEE--EEEecCCE
Q 046773 277 DLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVAC--TSSRVITFDLRNQGM---VLG-ERGYGRGLYVT--SVDVNAEA 348 (453)
Q Consensus 277 ~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas--~d~tIrlWDl~t~~~---~~~-~~g~~~~~~v~--~~~~~g~~ 348 (453)
..+ .-..+|.++.+.|++.+++. ..++..+|++-+.+. +.. .+.+.|..++. -++|+++.
T Consensus 162 liP------------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 162 LIP------------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred cCC------------CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence 011 11246788888888865553 348999999976532 111 12233333333 37999999
Q ss_pred EEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCc
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
|+++|+|. +++||+.++. +.-..+++|..|+-..+|+.++.|+++++. +++||||++.|+.++...||...
T Consensus 230 lat~ssdk-------tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 230 LATCSSDK-------TVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred EEeecCCc-------eEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 99999999 9999999987 444456777778999999999999999887 99999999999999999999776
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-22 Score=214.28 Aligned_cols=238 Identities=14% Similarity=0.139 Sum_probs=167.6
Q ss_pred EEecCCEEE------EEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEee
Q 046773 150 LTLSDLYLA------CGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 150 lafs~~~La------SGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~~ 220 (453)
++.+++++| +|+.++.|+||++.+..++.+|.+|.. .|.+++|+ +..|||||.|++|+|||+.
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~--------~V~~lafsP~~~~lLASgS~DgtIrIWDi~ 105 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTS--------SILDLQFNPCFSEILASGSEDLTIRVWEIP 105 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCC--------CEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Confidence 445555433 477899999999999889999998764 68889886 4689999999999999997
Q ss_pred cCCc---------ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 221 DVAN---------ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 221 ~~g~---------~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
+.+. ..+.+|...|. .|+|+|++.. .|+|+|.|++|+|||+++++... .+
T Consensus 106 t~~~~~~~i~~p~~~L~gH~~~V~----sVaf~P~g~~--iLaSgS~DgtIrIWDl~tg~~~~--------------~i- 164 (568)
T PTZ00420 106 HNDESVKEIKDPQCILKGHKKKIS----IIDWNPMNYY--IMCSSGFDSFVNIWDIENEKRAF--------------QI- 164 (568)
T ss_pred CCCccccccccceEEeecCCCcEE----EEEECCCCCe--EEEEEeCCCeEEEEECCCCcEEE--------------EE-
Confidence 5221 13455655543 4899999875 46899999999999999987321 12
Q ss_pred eeccceeEEEEcCCceEE--EEcCCcEEEEECCCCceEEEEeeccCCeEEEE-----EEecCCEEEEEeCCCccccCcce
Q 046773 292 EFTEFVGRVRVTSHESAV--ACTSSRVITFDLRNQGMVLGERGYGRGLYVTS-----VDVNAEAYIVVENRELENQNRRL 364 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~v--as~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~-----~~~~g~~l~s~s~dg~~~~~~~~ 364 (453)
.|...|.++.|++++.++ +|.|++|+|||++++.++.++.+|.......+ |+++++.+++++.++ .++++
T Consensus 165 ~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~---~~~R~ 241 (568)
T PTZ00420 165 NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK---NNMRE 241 (568)
T ss_pred ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC---CCccE
Confidence 244678999999877433 35678999999999987776667764432222 346677888877665 12347
Q ss_pred EEEEEcCC-CeeEEEEEecCC--CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 365 AIVRRVDT-FEEVCRFSLRAD--RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 365 i~Iw~~~t-g~~v~~l~~~~~--~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
++|||+.+ .+++..+..+.. .+......+++.+++++++ ++||+||+.++. ++.|
T Consensus 242 VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l 300 (568)
T PTZ00420 242 MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKV 300 (568)
T ss_pred EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEee
Confidence 99999985 566666544321 1122222233556666666 999999998874 3444
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-22 Score=189.02 Aligned_cols=238 Identities=18% Similarity=0.257 Sum_probs=183.8
Q ss_pred EEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEE
Q 046773 178 RTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLY 254 (453)
Q Consensus 178 ~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~La 254 (453)
++|++|.. .|.+++++ ++.|++++.|+.|++|++.+.. ...+..|...+ ..+.|+|+++. |+
T Consensus 3 ~~~~~h~~--------~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~---l~ 67 (289)
T cd00200 3 RTLKGHTG--------GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV----RDVAASADGTY---LA 67 (289)
T ss_pred hHhcccCC--------CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcce----eEEEECCCCCE---EE
Confidence 46666653 57888876 4789999999999999998722 33444454433 14899999865 78
Q ss_pred EeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEEEc-CCcEEEEECCCCceEEEEee
Q 046773 255 AGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVACT-SSRVITFDLRNQGMVLGERG 332 (453)
Q Consensus 255 SgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~vas~-d~tIrlWDl~t~~~~~~~~g 332 (453)
+++.|++|+|||+.+++.. ..+..|...+.++.++++. +++++. ++.|++||+++++.......
T Consensus 68 ~~~~~~~i~i~~~~~~~~~--------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 133 (289)
T cd00200 68 SGSSDKTIRLWDLETGECV--------------RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133 (289)
T ss_pred EEcCCCeEEEEEcCcccce--------------EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence 9999999999999987532 2345666788999999864 455555 78999999998776655554
Q ss_pred ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEEC
Q 046773 333 YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEV 411 (453)
Q Consensus 333 ~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~ 411 (453)
|...+...++++++..+++++.++ .+++|+..+++.+..+..+...+..+.+++++..+++++. +.|++||+
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~-------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDG-------TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCC-------cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEEC
Confidence 544444445556556666666688 9999999998888888877777889999999888888876 99999999
Q ss_pred CCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 412 EGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 412 ~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+++.+..+.+|.+. +. +++|++..++++ .|+.|++||+.
T Consensus 207 ~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 207 STGKCLGTLRGHENG-VNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CCCceecchhhcCCc-eEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 999999999888877 77 566888888888 69999999975
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=213.09 Aligned_cols=268 Identities=18% Similarity=0.263 Sum_probs=204.2
Q ss_pred EEEEEecCC--EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeec-
Q 046773 147 CRCLTLSDL--YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDD- 221 (453)
Q Consensus 147 v~~lafs~~--~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~- 221 (453)
|+|+.-+++ .||.|-.||.|||||..+++.+-+|.||.. +|+.+.|+ |.+|+|||.|+.|.|||+-.
T Consensus 68 vt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~--------AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E 139 (888)
T KOG0306|consen 68 VTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKA--------AVTTLKFDKIGTRLASGSKDTDIIVWDLVGE 139 (888)
T ss_pred EEEeeccCCcceEEEEecCceEEeeccCCCceeeeeccccc--------ceEEEEEcccCceEeecCCCccEEEEEeccc
Confidence 788877664 579999999999999999999999999765 78988887 78999999999999999743
Q ss_pred CCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 222 VANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 222 ~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
.|.-.+++|...+.. .-|..+.++ |+|.|-|..||+||++|..|+. |...|...+..+.
T Consensus 140 ~Gl~rL~GHkd~iT~----~~F~~~~~~---lvS~sKDs~iK~WdL~tqhCf~--------------Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 140 EGLFRLRGHKDSITQ----ALFLNGDSF---LVSVSKDSMIKFWDLETQHCFE--------------THVDHRGEIWALV 198 (888)
T ss_pred eeeEEeecchHHHhH----HhccCCCeE---EEEeccCceEEEEecccceeee--------------EEecccceEEEEE
Confidence 366778888665431 235554444 7899999999999999998874 3456777888888
Q ss_pred EcCCceEEEEcCCcEEEEECCCC----------ce-------------EEEE-e--------------------------
Q 046773 302 VTSHESAVACTSSRVITFDLRNQ----------GM-------------VLGE-R-------------------------- 331 (453)
Q Consensus 302 ~s~~~~~vas~d~tIrlWDl~t~----------~~-------------~~~~-~-------------------------- 331 (453)
++++..+.+..|..+++|+|... .+ ...+ .
T Consensus 199 ~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E 278 (888)
T KOG0306|consen 199 LDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEE 278 (888)
T ss_pred EecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHH
Confidence 88866666677778888888100 00 0000 0
Q ss_pred --------------------------------------------------------------------------------
Q 046773 332 -------------------------------------------------------------------------------- 331 (453)
Q Consensus 332 -------------------------------------------------------------------------------- 331 (453)
T Consensus 279 ~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~ 358 (888)
T KOG0306|consen 279 IAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTS 358 (888)
T ss_pred HHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCC
Confidence
Q ss_pred ----------eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE
Q 046773 332 ----------GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 332 ----------g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~ 401 (453)
-.+|..-|.++.++.+.++++|..+ ..++||+.+|.+|+++++.. -+....|+|.+++++++
T Consensus 359 p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~------~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G 430 (888)
T KOG0306|consen 359 PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG------ESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLG 430 (888)
T ss_pred ccccccceeeeccchhheeEEEeecCceeeeecCC------CcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEe
Confidence 0011112234444455555555544 18999999999999998643 46667788888999888
Q ss_pred eC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 402 VE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 402 s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.. |.+.|.|+.++..+-+.+.|.+. +| +++||++..++| .|++||+|||.
T Consensus 431 ~k~Gel~vfdlaS~~l~Eti~AHdga-IWsi~~~pD~~g~vT~saDktVkfWdf~ 484 (888)
T KOG0306|consen 431 TKNGELQVFDLASASLVETIRAHDGA-IWSISLSPDNKGFVTGSADKTVKFWDFK 484 (888)
T ss_pred ccCCceEEEEeehhhhhhhhhccccc-eeeeeecCCCCceEEecCCcEEEEEeEE
Confidence 87 99999999999999999999999 99 556999999999 99999999984
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=213.58 Aligned_cols=264 Identities=13% Similarity=0.190 Sum_probs=197.7
Q ss_pred CCCCCCCCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEE--EecCCCCCccccccceEEE-EEEc---CCeEEEEe
Q 046773 137 SDVDNPDGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVR--TFRPQHSDRLGQFSRAVSG-IIIT---DSQLIFAT 209 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~--tl~gh~~~~~~~~s~~V~~-i~f~---g~~LasgS 209 (453)
+||.. - |..+++.. ..++++|.|+|+|+|+-...+.+. ++.+|++ .+.. +++. .-+|++|+
T Consensus 11 ~gH~~--D--Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g--------~i~~~i~y~e~~~~~l~~g~ 78 (745)
T KOG0301|consen 11 EGHKS--D--VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKG--------FIANSICYAESDKGRLVVGG 78 (745)
T ss_pred ccCcc--c--hheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcc--------eeeccceeccccCcceEeec
Confidence 48973 3 56666654 579999999999999987777653 4555543 2332 4443 34699999
Q ss_pred CCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 210 LDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 210 ~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
+|.+|.||...+.- +.++.+|...|- .++-..++. |.|||.|+|+|||-. +++- .
T Consensus 79 ~D~~i~v~~~~~~~P~~~LkgH~snVC----~ls~~~~~~----~iSgSWD~TakvW~~--~~l~--------------~ 134 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTLKGHKSNVC----SLSIGEDGT----LISGSWDSTAKVWRI--GELV--------------Y 134 (745)
T ss_pred ccceEEEEecCCCCchhhhhcccccee----eeecCCcCc----eEecccccceEEecc--hhhh--------------c
Confidence 99999999987622 577888876553 344333433 789999999999975 3321 2
Q ss_pred eeeeeccceeEEEEcCC-ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEe-cCCEEEEEeCCCccccCcceEE
Q 046773 289 MLTEFTEFVGRVRVTSH-ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDV-NAEAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~-~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~ 366 (453)
.+.+|+..|.+|.+-|. ..+++|.|.+||+|.-. +++.++.||+. .|..+.. +...++|++.|| .|+
T Consensus 135 ~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~--~~l~tf~gHtD--~VRgL~vl~~~~flScsNDg-------~Ir 203 (745)
T KOG0301|consen 135 SLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG--TLLKTFSGHTD--CVRGLAVLDDSHFLSCSNDG-------SIR 203 (745)
T ss_pred ccCCcchheeeeeecCCCcEEeccCcceeeeccCC--chhhhhccchh--heeeeEEecCCCeEeecCCc-------eEE
Confidence 36789999999986554 45677889999999863 56777777764 4566553 344899999999 999
Q ss_pred EEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEE--EecCCCEEEEEeC
Q 046773 367 VRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIA--FVGDDRHVAASCG 443 (453)
Q Consensus 367 Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a--~s~d~~~lasg~D 443 (453)
.|+. +|+++.++-+|.+-+.++....+++.+++|+. +|+|||+.. +|.+.+.-++-. ||+ +-++|.+++.++|
T Consensus 204 ~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtts-iWsa~~L~NgDIvvg~SD 279 (745)
T KOG0301|consen 204 LWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTS-IWSAKVLLNGDIVVGGSD 279 (745)
T ss_pred EEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccc-eEEEEEeeCCCEEEeccC
Confidence 9999 78999999999888888876667788888887 999999987 888888755556 884 3468877665599
Q ss_pred CcEEEEec
Q 046773 444 TNIHLWDF 451 (453)
Q Consensus 444 ~~IklWDl 451 (453)
|.||||-.
T Consensus 280 G~VrVfT~ 287 (745)
T KOG0301|consen 280 GRVRVFTV 287 (745)
T ss_pred ceEEEEEe
Confidence 99999964
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=212.52 Aligned_cols=232 Identities=11% Similarity=0.012 Sum_probs=166.7
Q ss_pred EcCCeEEEEeCCCCEEEEEeec---------CC-----cceEEeeecceecCceEEEEeC-CCceeeEEEEeeCCCeEEE
Q 046773 200 ITDSQLIFATLDGDIHVAVIDD---------VA-----NETRTAHFGSVMDDGVLIDFTG-CSRYWVGLYAGLAGRAFHI 264 (453)
Q Consensus 200 f~g~~LasgS~D~tIkvWd~~~---------~g-----~~~~~~~~~~v~~~~~~v~Fs~-dg~~~~~LaSgS~D~tIrv 264 (453)
+++..+++++.+..+..|+... .| ...+.+|.+.|. .|+|+| ++++ |+|||.|++|+|
T Consensus 30 ~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~----~v~fsP~d~~~---LaSgS~DgtIkI 102 (493)
T PTZ00421 30 WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPII----DVAFNPFDPQK---LFTASEDGTIMG 102 (493)
T ss_pred CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEE----EEEEcCCCCCE---EEEEeCCCEEEE
Confidence 4445555555555555665432 12 123566776654 489999 7775 899999999999
Q ss_pred eeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEE
Q 046773 265 WDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTS 341 (453)
Q Consensus 265 WD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~ 341 (453)
||+.++.... +......+|.+|...|.+|+|+|.. +++++.|++|+|||+++++++..+.+|...+...+
T Consensus 103 Wdi~~~~~~~-------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 103 WGIPEEGLTQ-------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred EecCCCcccc-------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 9998753110 0000124678999999999999853 45567789999999999887666667766666667
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC-eeEEEEeeCCCeEEEEe-----CCeEEEEECCCCe
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR-NVNVMGCMNQGYALMCV-----EGVIRVWEVEGGE 415 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~-v~~~~~~~~~~~lls~s-----~~tIrlWD~~tG~ 415 (453)
+++++..+++++.|+ +|+|||..+++.+.++..|... ...+.+++++..+++++ +++|+|||+.+..
T Consensus 176 ~spdG~lLatgs~Dg-------~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 176 WNLDGSLLCTTSKDK-------KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EECCCCEEEEecCCC-------EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 788899999999999 9999999999998888877644 34566777777777653 2899999998754
Q ss_pred -EEEEecccCCceEE--EEecCCCEEEEE--eCCcEEEEecC
Q 046773 416 -YMYSFRERIGEEVI--AFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 416 -~l~tL~gh~~~~V~--a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
++.++..+....+. .+++|++.|+++ .|++|++||+.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 45544444333133 567999988766 59999999974
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-22 Score=209.64 Aligned_cols=243 Identities=11% Similarity=0.056 Sum_probs=168.7
Q ss_pred EEEecCCEEEEEeCCCcEEEEECCCCeEEE-------------EecCCCCCccccccceEEEEEEc---CCeEEEEeCCC
Q 046773 149 CLTLSDLYLACGFADGAVRLFDLTTRLHVR-------------TFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDG 212 (453)
Q Consensus 149 ~lafs~~~LaSGS~D~TIrlWD~~tg~~~~-------------tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~ 212 (453)
..++++..+++++.+..+..|+...|..+- .|.||. ..|.+++|+ +..|++||.|+
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~--------~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE--------GPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC--------CCEEEEEEcCCCCCEEEEEeCCC
Confidence 333445567777777777788766554432 244543 368889886 46899999999
Q ss_pred CEEEEEeecCC--------cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 213 DIHVAVIDDVA--------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 213 tIkvWd~~~~g--------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
+|+|||+...+ +..+.+|...|. .|+|+|++.. .|+|||.|++|+|||+++++..
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~----~l~f~P~~~~--iLaSgs~DgtVrIWDl~tg~~~----------- 161 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVG----IVSFHPSAMN--VLASAGADMVVNVWDVERGKAV----------- 161 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEE----EEEeCcCCCC--EEEEEeCCCEEEEEECCCCeEE-----------
Confidence 99999997532 234556665543 4899998642 3899999999999999998743
Q ss_pred eeeeeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeE-EEEEEecCCEEEEEeCCCccccC
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLY-VTSVDVNAEAYIVVENRELENQN 361 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~-v~~~~~~g~~l~s~s~dg~~~~~ 361 (453)
..+.+|.+.|.+++|+|++. +++|.|++|||||+++++++....+|..... ...+.++++.+++++.++ ..
T Consensus 162 ---~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~---s~ 235 (493)
T PTZ00421 162 ---EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSK---SQ 235 (493)
T ss_pred ---EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCC---CC
Confidence 34667889999999998763 4456689999999999887766666654322 234556667777654321 01
Q ss_pred cceEEEEEcCCCe-eEEEEEecC-CCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCCeEEEEecc
Q 046773 362 RRLAIVRRVDTFE-EVCRFSLRA-DRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGGEYMYSFRE 422 (453)
Q Consensus 362 ~~~i~Iw~~~tg~-~v~~l~~~~-~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG~~l~tL~g 422 (453)
|++++|||+.+.. ++.....+. ..+....+++++..+++++ + ++||+||+.+++.+..+..
T Consensus 236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence 3399999998653 444333332 2233345667788777665 3 9999999999998877644
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=216.87 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=163.2
Q ss_pred CCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC--eEEEEeCC
Q 046773 136 PSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS--QLIFATLD 211 (453)
Q Consensus 136 ~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~--~LasgS~D 211 (453)
+.+|+-| |..+.|-+ .+.+||++|-+||||+..+.+|+.||.||-. .|+.+.|.-. -|+|+|.|
T Consensus 47 FdeHdGp----VRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD--------YVRt~~FHheyPWIlSASDD 114 (1202)
T KOG0292|consen 47 FDEHDGP----VRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD--------YVRTVFFHHEYPWILSASDD 114 (1202)
T ss_pred hhccCCc----cceeeecCCCCeEEecCCccEEEEEecccceehhhhccccc--------eeEEeeccCCCceEEEccCC
Confidence 3489866 88999976 6999999999999999999999999999764 7888999876 49999999
Q ss_pred CCEEEEEeecC-CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---EEe--------ccc--
Q 046773 212 GDIHVAVIDDV-ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---VFV--------GGD-- 277 (453)
Q Consensus 212 ~tIkvWd~~~~-g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---~~~--------g~~-- 277 (453)
.||+||||.+. .+.++++|...|+ .-.|+|.... ++|+|-|.||||||+..=+ .-. |+.
T Consensus 115 QTIrIWNwqsr~~iavltGHnHYVM----cAqFhptEDl---IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 115 QTIRIWNWQSRKCIAVLTGHNHYVM----CAQFHPTEDL---IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred CeEEEEeccCCceEEEEecCceEEE----eeccCCccce---EEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence 99999999882 2888999988776 3579997664 7899999999999986422 111 111
Q ss_pred --ccC-CcceeeeeeeeeeccceeEEEEcCCc-eEEE-EcCCcEEEEECCCCceEEE--EeeccCCeEEEEEEecCCEEE
Q 046773 278 --LTD-HNTVMGWRMLTEFTEFVGRVRVTSHE-SAVA-CTSSRVITFDLRNQGMVLG--ERGYGRGLYVTSVDVNAEAYI 350 (453)
Q Consensus 278 --l~~-~~~v~~w~~l~~h~~~v~~v~~s~~~-~~va-s~d~tIrlWDl~t~~~~~~--~~g~~~~~~v~~~~~~g~~l~ 350 (453)
|.+ +..+. =+.|.||.--||-++|+|.- ++++ ++|..||+|-+..-+.--. ..||...+...-|+|..+.++
T Consensus 188 ~dLfg~~DaVV-K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 188 SDLFGQTDAVV-KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred hhhcCCcCeee-eeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence 111 11111 15789999889999999954 3444 4557899999864322111 256654433333555558899
Q ss_pred EEeCCCccccCcceEEEEEcCCCeeEEEEE
Q 046773 351 VVENRELENQNRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 351 s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~ 380 (453)
|.|.|+ +|||||.+..+++++|.
T Consensus 267 SnsEDk-------sirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 267 SNSEDK-------SIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ecCCCc-------cEEEEecccccceeeee
Confidence 988888 99999999888888774
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=194.62 Aligned_cols=286 Identities=13% Similarity=0.146 Sum_probs=201.4
Q ss_pred eeEEeeCCCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEec---CCCCCccccccceEEEEEE--c
Q 046773 129 HFNLYFDPSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFR---PQHSDRLGQFSRAVSGIII--T 201 (453)
Q Consensus 129 ~~~~~~~~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~---gh~~~~~~~~s~~V~~i~f--~ 201 (453)
||.+......|. -.|+|+-|+| .+.||.+.|++|-|+|=.||+.+..|. +|.+ .|-+|++ |
T Consensus 179 PFKFk~s~r~Hs----kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG--------sIfalsWsPD 246 (603)
T KOG0318|consen 179 PFKFKSSFREHS----KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG--------SIFALSWSPD 246 (603)
T ss_pred Ceeeeecccccc----cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccc--------cEEEEEECCC
Confidence 344443333455 3599999987 599999999999999999999999998 5443 6777876 5
Q ss_pred CCeEEEEeCCCCEEEEEeecCC-cceEE---------------------eeeccee-----------------c-CceEE
Q 046773 202 DSQLIFATLDGDIHVAVIDDVA-NETRT---------------------AHFGSVM-----------------D-DGVLI 241 (453)
Q Consensus 202 g~~LasgS~D~tIkvWd~~~~g-~~~~~---------------------~~~~~v~-----------------~-~~~~v 241 (453)
+.+++|+|.|+|+||||+.+.- ++++. +-.+... + .-..+
T Consensus 247 s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 247 STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence 6789999999999999997611 11110 0000000 0 00147
Q ss_pred EEeCCCceeeEEEEeeCCCeEEEeeCCCCcE--EecccccCCcceeeeeeeeeeccceeEEEEcC-CceEEEEcCCcEEE
Q 046773 242 DFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV--FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS-HESAVACTSSRVIT 318 (453)
Q Consensus 242 ~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~--~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~-~~~~vas~d~tIrl 318 (453)
+.+||+++ |+|||.|+.|.=||..+|.. +.| ++|+..|.+++.+. +.+++.+.|+++|+
T Consensus 327 tv~~d~~~---i~SgsyDG~I~~W~~~~g~~~~~~g---------------~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~ 388 (603)
T KOG0318|consen 327 TVSPDGKT---IYSGSYDGHINSWDSGSGTSDRLAG---------------KGHTNQIKGMAASESGELFTIGWDDTLRV 388 (603)
T ss_pred EEcCCCCE---EEeeccCceEEEEecCCcccccccc---------------ccccceEEEEeecCCCcEEEEecCCeEEE
Confidence 88999976 89999999999999999883 211 35667777777765 55666677888888
Q ss_pred EECCCCceEEEE-------------------------------eecc--------CCeEEEEEEecCCEEEEEeCCCccc
Q 046773 319 FDLRNQGMVLGE-------------------------------RGYG--------RGLYVTSVDVNAEAYIVVENRELEN 359 (453)
Q Consensus 319 WDl~t~~~~~~~-------------------------------~g~~--------~~~~v~~~~~~g~~l~s~s~dg~~~ 359 (453)
-++..+++-... ..+. -...+.+++|+++..+.+..|+
T Consensus 389 ~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg--- 465 (603)
T KOG0318|consen 389 ISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG--- 465 (603)
T ss_pred EecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc---
Confidence 766433211100 0000 0112245677788888888888
Q ss_pred cCcceEEEEEcCCCeeEE--EEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc-cCCceEE--EEec
Q 046773 360 QNRRLAIVRRVDTFEEVC--RFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE-RIGEEVI--AFVG 433 (453)
Q Consensus 360 ~~~~~i~Iw~~~tg~~v~--~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g-h~~~~V~--a~s~ 433 (453)
.++|+.+.-++... .+..|...+..+.++||+.|++++.. +.|-+||+++.+.....-+ |+.. |+ +.+|
T Consensus 466 ----kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak-I~~~aWsP 540 (603)
T KOG0318|consen 466 ----KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK-INCVAWSP 540 (603)
T ss_pred ----eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee-EEEEEeCC
Confidence 88999887654222 23456667889999999999887766 9999999999877332223 7777 87 5679
Q ss_pred CCCEEEEE-eCCcEEEEecC
Q 046773 434 DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 434 d~~~lasg-~D~~IklWDl~ 452 (453)
+.++||+| -|.+|.||++.
T Consensus 541 ~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 541 NNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CceEEEeccccceEEEEEcc
Confidence 99999999 99999999874
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=205.45 Aligned_cols=266 Identities=15% Similarity=0.190 Sum_probs=195.1
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe--EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL--HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~ 220 (453)
|..+-|-+ +.|+||+.|..|++|++...+ .+.+|.|-.+ .+.++.|+ +..++++|.|+.+++||++
T Consensus 178 v~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g--------~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG--------NITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred cceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCC--------CcceeeecCCCceEEeecCCCceeeeecc
Confidence 55666643 689999999999999998877 4666665222 46778886 5678889999999999998
Q ss_pred cCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 221 DVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 221 ~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
..- .+++++|++.|. .+.|.-.... ++|||.|.|||+||+..+.|... + |. .+.++.
T Consensus 250 ~~r~~~TLsGHtdkVt----~ak~~~~~~~---vVsgs~DRtiK~WDl~k~~C~kt--------~-----l~--~S~cnD 307 (459)
T KOG0288|consen 250 SLRLRHTLSGHTDKVT----AAKFKLSHSR---VVSGSADRTIKLWDLQKAYCSKT--------V-----LP--GSQCND 307 (459)
T ss_pred chhhhhhhccccccee----eehhhccccc---eeeccccchhhhhhhhhhheecc--------c-----cc--cccccc
Confidence 832 789999988764 2455433221 67999999999999998775420 0 11 134555
Q ss_pred EEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 300 VRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 300 v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
|..++...+++-.|.+||+||+++..+......++ .+....+++++..+.+.+.|. ++++.|..+.+-.+++
T Consensus 308 I~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDd-------tl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 308 IVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDD-------TLKVIDLRTKEIRQTF 379 (459)
T ss_pred eEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCC-------ceeeeecccccEEEEe
Confidence 55554334444458899999999987766544433 233334557777788778777 9999999988766666
Q ss_pred EecC----CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccC-CceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 380 SLRA----DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERI-GEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 380 ~~~~----~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~-~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
+... +....++|+|++.|+++++. +.|+||++.+|+|-..|...+ ...|+ ++.|.|..|+++ .++.+.||.
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 4432 22567899999999999887 999999999999998886543 32377 556899999988 999999993
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=194.63 Aligned_cols=293 Identities=15% Similarity=0.180 Sum_probs=187.3
Q ss_pred hhhcccccCceeeEEeeCCCCCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceE
Q 046773 118 TAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAV 195 (453)
Q Consensus 118 ~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V 195 (453)
+..-|+.+..+.. +..+..||. |+|| -++-+ ...+.|+|.|.|.+||.+++|+|+.++.||.+ +|
T Consensus 127 ivssFk~~t~~~~-lvre~~GHk--DGiW--~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--------SV 193 (481)
T KOG0300|consen 127 IVSSFKDGTVKFR-LVRELEGHK--DGIW--HVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--------SV 193 (481)
T ss_pred heeeecCCceeEe-ehhhhcccc--ccee--eehhhcCCcceeecccccceeEEeeccccceeeeccccc--------ce
Confidence 3446777775443 333456999 6755 55554 46999999999999999999999999999875 78
Q ss_pred EEEEEc--CCeEEEEeCCCCEEEEEe----ecCCcceEEeeec----------------ceecCce-------------E
Q 046773 196 SGIIIT--DSQLIFATLDGDIHVAVI----DDVANETRTAHFG----------------SVMDDGV-------------L 240 (453)
Q Consensus 196 ~~i~f~--g~~LasgS~D~tIkvWd~----~~~g~~~~~~~~~----------------~v~~~~~-------------~ 240 (453)
.+|.|. +..++++|-|+|.+||.. +.|-...-..|.+ ....|+. .
T Consensus 194 Nsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~ 273 (481)
T KOG0300|consen 194 NSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRA 273 (481)
T ss_pred eeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecccc
Confidence 999986 567899999999999962 2210000000100 0000100 0
Q ss_pred E----EEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEE-EcCC
Q 046773 241 I----DFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVA-CTSS 314 (453)
Q Consensus 241 v----~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~va-s~d~ 314 (453)
+ .+-.-|+. ++++|.|.|..|||+++|+.+ +.|+||....+.+.-+|.. +++. |-|.
T Consensus 274 vV~a~dWL~gg~Q---~vTaSWDRTAnlwDVEtge~v--------------~~LtGHd~ELtHcstHptQrLVvTsSrDt 336 (481)
T KOG0300|consen 274 VVSACDWLAGGQQ---MVTASWDRTANLWDVETGEVV--------------NILTGHDSELTHCSTHPTQRLVVTSSRDT 336 (481)
T ss_pred ceEehhhhcCcce---eeeeeccccceeeeeccCcee--------------ccccCcchhccccccCCcceEEEEeccCc
Confidence 0 01111333 678999999999999999954 4466777667767667654 3333 4568
Q ss_pred cEEEEECCCCceEEEE-eeccCCeEEEEEEec-CCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEE
Q 046773 315 RVITFDLRNQGMVLGE-RGYGRGLYVTSVDVN-AEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMG 391 (453)
Q Consensus 315 tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~-g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~ 391 (453)
|.||||.+. .+... +.++|...|++..|. ++.++++|.|. ++||||+.+- .++.++... +.+..++.
T Consensus 337 TFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDr-------TvKvWdLrNMRsplATIRtd-S~~NRvav 406 (481)
T KOG0300|consen 337 TFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDR-------TVKVWDLRNMRSPLATIRTD-SPANRVAV 406 (481)
T ss_pred eeEeccchh--hcceeeeecccccceeEEEEecCCceeecCCCc-------eEEEeeeccccCcceeeecC-CccceeEe
Confidence 899999983 33332 344555566666554 56788988888 9999998763 345554432 22445555
Q ss_pred eeCCCeEEEEeC-CeEEEEECCCCeEEEEec-----ccCCceEEEEe-----cCCCEEEEEeCCcEEEEecC
Q 046773 392 CMNQGYALMCVE-GVIRVWEVEGGEYMYSFR-----ERIGEEVIAFV-----GDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 392 ~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~-----gh~~~~V~a~s-----~d~~~lasg~D~~IklWDl~ 452 (453)
|.....++.--+ ..|||+|+. |..+..|+ ||..- |.+.+ |--..+.+|-|.++.=|.+.
T Consensus 407 s~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRM-V~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 407 SKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRM-VTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ecCCceEEeccCCceEEEEecC-CCccccCCccccccccee-eeeeeccccCcccccccccccceeeeeEec
Confidence 543333333345 899999997 44444443 56554 76443 22223344589999999764
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=188.34 Aligned_cols=280 Identities=12% Similarity=0.074 Sum_probs=199.0
Q ss_pred CCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||+-| ++-+.|+ +++|.|++.|.++.||-...|+.+-|+.||.+ +|.++..| .+.|+|||.|.+
T Consensus 8 GHERp----lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtG--------avW~~Did~~s~~liTGSAD~t 75 (327)
T KOG0643|consen 8 GHERP----LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG--------AVWCCDIDWDSKHLITGSADQT 75 (327)
T ss_pred cCccc----cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCc--------eEEEEEecCCcceeeeccccce
Confidence 89977 7888887 68999999999999999999999999999876 78888776 678999999999
Q ss_pred EEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEe----eCCCeEEEeeCCCCc-EEecccccCCcceeeee
Q 046773 214 IHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAG----LAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 214 IkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSg----S~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~ 288 (453)
+|+||+.+ |.+..+.-.+..+ ..+.|+++|.++ |++- +.-+.|.+.|++.-. .... +. ...
T Consensus 76 ~kLWDv~t-Gk~la~~k~~~~V---k~~~F~~~gn~~--l~~tD~~mg~~~~v~~fdi~~~~~~~~s------~e--p~~ 141 (327)
T KOG0643|consen 76 AKLWDVET-GKQLATWKTNSPV---KRVDFSFGGNLI--LASTDKQMGYTCFVSVFDIRDDSSDIDS------EE--PYL 141 (327)
T ss_pred eEEEEcCC-CcEEEEeecCCee---EEEeeccCCcEE--EEEehhhcCcceEEEEEEccCChhhhcc------cC--ceE
Confidence 99999999 7333332222211 248999999863 3431 223678999988422 1000 00 001
Q ss_pred eeeeeccceeEEEEcCC-ceEEEE-cCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 289 MLTEFTEFVGRVRVTSH-ESAVAC-TSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~-~~~vas-~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
.+..+.+.+..+-.+|- ..++++ .|+.|..||+++|..+..- ..|.+.+.-.+++++....+++|-|. +.
T Consensus 142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt-------ta 214 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT-------TA 214 (327)
T ss_pred EecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc-------cc
Confidence 12233344555555543 345555 4689999999998655442 56776666667888888999999999 99
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC---CeE------------EEEECCCCeEEEEecccCCceEE-
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE---GVI------------RVWEVEGGEYMYSFRERIGEEVI- 429 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~---~tI------------rlWD~~tG~~l~tL~gh~~~~V~- 429 (453)
++||..+-+++.++.-.. -|.+.+.+|--.+++.+++ ..| |.+++..-+.+..+.||-+. |+
T Consensus 215 kl~D~~tl~v~Kty~te~-PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP-INs 292 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTTER-PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP-INS 292 (327)
T ss_pred eeeeccceeeEEEeeecc-cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC-cce
Confidence 999999988877764321 2667777876666665544 222 33333334556778899999 98
Q ss_pred -EEecCCCEEEEE-eCCcEEEEecC
Q 046773 430 -AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 430 -a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+|+|||+--+|| +||.|||--|.
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eEECCCCcccccCCCCceEEEEEec
Confidence 788999999999 99999997553
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=193.47 Aligned_cols=276 Identities=15% Similarity=0.200 Sum_probs=200.7
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECC------------CC------eEEEEecCCCCCccccccceEEE
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLT------------TR------LHVRTFRPQHSDRLGQFSRAVSG 197 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~------------tg------~~~~tl~gh~~~~~~~~s~~V~~ 197 (453)
-|..| |.|-+||+ .++||||.|..|||.|++ .| -.+|||.-|.. .|..
T Consensus 110 ~HK~~----cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d--------evn~ 177 (430)
T KOG0640|consen 110 SHKSP----CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD--------EVND 177 (430)
T ss_pred ecccc----eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC--------cccc
Confidence 47655 89999986 599999999999999987 11 13677766543 5888
Q ss_pred EEEcC--CeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe
Q 046773 198 IIITD--SQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV 274 (453)
Q Consensus 198 i~f~g--~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~ 274 (453)
+.|.+ .+|+|||.|+|||+.|...+. ...++....- ..-..+.|+|.|.+ |+.|..-.++||+|++|-++|.
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~--~~vrsiSfHPsGef---llvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDT--EPVRSISFHPSGEF---LLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhcc--ceeeeEeecCCCce---EEEecCCCceeEEeccceeEee
Confidence 98885 589999999999999987522 1111111100 00125899999998 6678888899999999999885
Q ss_pred cccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEE--EEecCCEE
Q 046773 275 GGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTS--VDVNAEAY 349 (453)
Q Consensus 275 g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~--~~~~g~~l 349 (453)
-.. .-.+|++.|++|++++.+ .+.+|-|+.|||||=-+++|+.+. ..|+... |.+ |.-++..+
T Consensus 253 san-----------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse-vcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 253 SAN-----------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE-VCSAVFTKNGKYI 320 (430)
T ss_pred ecC-----------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce-eeeEEEccCCeEE
Confidence 321 124789999999999766 466788999999999999998775 5565433 433 66677777
Q ss_pred EEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC----eeE-EEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEec-
Q 046773 350 IVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR----NVN-VMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFR- 421 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~----v~~-~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~- 421 (453)
++.+.|. ++++|.+.|+.++.+.++-+-. .++ .+|.-...|++.-.. +.+--||..++..+..+.
T Consensus 321 LsSG~DS-------~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl 393 (430)
T KOG0640|consen 321 LSSGKDS-------TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL 393 (430)
T ss_pred eecCCcc-------eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc
Confidence 7777777 9999999999999888765311 121 233333456554433 677889999987766553
Q ss_pred ccCCceEEEE--ecCCCEEEEE-eCCcEEEEe
Q 046773 422 ERIGEEVIAF--VGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 422 gh~~~~V~a~--s~d~~~lasg-~D~~IklWD 450 (453)
||.+. |..| +|.+.-..++ .|..+|.|-
T Consensus 394 gHn~a-~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 394 GHNGA-VRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCCC-ceEEEeCCCCCceeeecccceeeeee
Confidence 78888 7755 5888777777 999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-21 Score=192.86 Aligned_cols=276 Identities=16% Similarity=0.256 Sum_probs=201.7
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeC--C
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATL--D 211 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~--D 211 (453)
+|..+ ++-..||| -|||||-.-++|||||...-+.+ |+. .+.+++..|..|+++ +.+|+.-+. +
T Consensus 57 EH~~~----vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hi--LKn----ef~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 57 EHAHQ----VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHI--LKN----EFQVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred cccce----eEEEEeCCCceEEeecCCcCcEEEEeccCccee--eee----eeeecccccccceeCCCCcEEEEEecCcc
Confidence 56533 45555665 69999999999999998664433 221 123344567788865 556554333 3
Q ss_pred CCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 212 GDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 212 ~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
+-.++.-+++ | .--+.+|.-.+. +++|-|.-.+ -+++||.|++|-+++-.-- .|. .+
T Consensus 127 rfg~~F~~DS-G~SvGei~GhSr~in----s~~~KpsRPf--Ri~T~sdDn~v~ffeGPPF-KFk-------------~s 185 (603)
T KOG0318|consen 127 RFGHVFLWDS-GNSVGEITGHSRRIN----SVDFKPSRPF--RIATGSDDNTVAFFEGPPF-KFK-------------SS 185 (603)
T ss_pred ceeEEEEecC-CCccceeeccceeEe----eeeccCCCce--EEEeccCCCeEEEeeCCCe-eee-------------ec
Confidence 3334433333 3 234555655443 4788777554 3889999999999874222 221 35
Q ss_pred eeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEE---eeccCCeEEEEEEecCCEEEEEeCCCccccCcce
Q 046773 290 LTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGE---RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRL 364 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~---~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~ 364 (453)
++.|+.+|++|+|+|++. +++++|++|.|+|=.+|+.+..+ .+|...++..+.+||+.+++++|.|. +
T Consensus 186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk-------t 258 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK-------T 258 (603)
T ss_pred ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc-------e
Confidence 678999999999999884 55678999999999999876655 36666666666778899999999999 9
Q ss_pred EEEEEcCCCeeEEEEEecCCCeeEEEEee-CCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEE--EecCCCEEEE
Q 046773 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCM-NQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIA--FVGDDRHVAA 440 (453)
Q Consensus 365 i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~-~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a--~s~d~~~las 440 (453)
+||||+.+.++++++.....--...++|. +...|++.+. |+|.+.+...+..++++.||... |++ ++||+++|.|
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~-ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS-ITALTVSPDGKTIYS 337 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc-eeEEEEcCCCCEEEe
Confidence 99999999999999876553222344443 4567777777 99999999999999999999999 885 5699999999
Q ss_pred E-eCCcEEEEecC
Q 046773 441 S-CGTNIHLWDFG 452 (453)
Q Consensus 441 g-~D~~IklWDl~ 452 (453)
| +||.|.=||++
T Consensus 338 gsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 338 GSYDGHINSWDSG 350 (603)
T ss_pred eccCceEEEEecC
Confidence 9 99999999986
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-22 Score=186.69 Aligned_cols=268 Identities=13% Similarity=0.153 Sum_probs=192.6
Q ss_pred EEEEecC---CEEEEE--e-----CCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCE
Q 046773 148 RCLTLSD---LYLACG--F-----ADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDI 214 (453)
Q Consensus 148 ~~lafs~---~~LaSG--S-----~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tI 214 (453)
++++||| ++||.+ . ..|++-|=|+..++-++.+..-. ....+-.++.+ .+.+++++-||++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d------~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD------TEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee------cccceeEeeecCCCcceEEEEecCceE
Confidence 7899998 454443 2 34788888886555454443111 11244556665 4689999999999
Q ss_pred EEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 215 HVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 215 kvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
|+||..-+. ++.++.|...|. +|+.++.-+. .+.++|.|+||||||..-++.+ .|.+|
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~----Svdwn~~~r~--~~ltsSWD~TiKLW~~~r~~Sv--------------~Tf~g 145 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVY----SVDWNTVRRR--IFLTSSWDGTIKLWDPNRPNSV--------------QTFNG 145 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheE----Eeccccccce--eEEeeccCCceEeecCCCCcce--------------EeecC
Confidence 999965432 667777876664 4666666554 3556699999999999777632 35678
Q ss_pred eccceeEEEEcCC---ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEE---ecCCEEEEEeCCCccccCcceEE
Q 046773 293 FTEFVGRVRVTSH---ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVD---VNAEAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 293 h~~~v~~v~~s~~---~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~---~~g~~l~s~s~dg~~~~~~~~i~ 366 (453)
|.+.|..++|+|. -.+++|+|++.||||++..+..+....|. ..+.+.+ ++.+.+++++.|+ .||
T Consensus 146 h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~--~Eil~cdw~ky~~~vl~Tg~vd~-------~vr 216 (311)
T KOG0277|consen 146 HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN--SEILCCDWSKYNHNVLATGGVDN-------LVR 216 (311)
T ss_pred CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc--ceeEeecccccCCcEEEecCCCc-------eEE
Confidence 8899999999864 35667889999999999765544444443 3455654 4467888888888 999
Q ss_pred EEEcCC-CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCC-eEEEEecccCCceEE--EEe-cCCCEEE
Q 046773 367 VRRVDT-FEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGG-EYMYSFRERIGEEVI--AFV-GDDRHVA 439 (453)
Q Consensus 367 Iw~~~t-g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG-~~l~tL~gh~~~~V~--a~s-~d~~~la 439 (453)
+||+.. ..++.++.+|.-.||.+.++|....++++++ -|+||||.+.+ .++.+..-|++- |. .++ .++.+||
T Consensus 217 ~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF-v~g~Dws~~~~~~vA 295 (311)
T KOG0277|consen 217 GWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEF-VCGLDWSLFDPGQVA 295 (311)
T ss_pred EEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceE-EeccccccccCceee
Confidence 999875 3567788888888999999997766665554 89999999965 455666667666 65 344 3778999
Q ss_pred EE-eCCcEEEEec
Q 046773 440 AS-CGTNIHLWDF 451 (453)
Q Consensus 440 sg-~D~~IklWDl 451 (453)
+. .|..++||+-
T Consensus 296 s~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 296 STGWDELLYVWNP 308 (311)
T ss_pred ecccccceeeecc
Confidence 87 9999999983
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-23 Score=207.39 Aligned_cols=239 Identities=13% Similarity=0.147 Sum_probs=173.8
Q ss_pred EEEEecCCCCCccccccceEEEEEE---cCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCcee
Q 046773 176 HVRTFRPQHSDRLGQFSRAVSGIII---TDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYW 250 (453)
Q Consensus 176 ~~~tl~gh~~~~~~~~s~~V~~i~f---~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~ 250 (453)
.++++.||.. .|++|.| .+.+|+|+++|+.|+||++...+ ++++.+|...|. .+.|+++|+.
T Consensus 206 ~~~~~~gH~k--------gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vr----d~~~s~~g~~- 272 (503)
T KOG0282|consen 206 LSHNLSGHTK--------GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVR----DASFNNCGTS- 272 (503)
T ss_pred heeeccCCcc--------ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhh----hhhccccCCe-
Confidence 4678888775 4677764 46789999999999999987633 788888876654 3799999986
Q ss_pred eEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeec-cceeEEEEcCCc--e-EEEEcCCcEEEEECCCCce
Q 046773 251 VGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT-EFVGRVRVTSHE--S-AVACTSSRVITFDLRNQGM 326 (453)
Q Consensus 251 ~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~-~~v~~v~~s~~~--~-~vas~d~tIrlWDl~t~~~ 326 (453)
+.|+|.|++||+||++||++..- -|+ ..+++|.|.|+. + +++..|+.|+.||+++++.
T Consensus 273 --fLS~sfD~~lKlwDtETG~~~~~----------------f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 273 --FLSASFDRFLKLWDTETGQVLSR----------------FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred --eeeeecceeeeeeccccceEEEE----------------EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence 67999999999999999995421 122 346789998765 4 4555689999999999875
Q ss_pred EEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC-CCeeEEEEeeCCCeEEEEeC-C
Q 046773 327 VLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-DRNVNVMGCMNQGYALMCVE-G 404 (453)
Q Consensus 327 ~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-~~v~~~~~~~~~~~lls~s~-~ 404 (453)
++...-|-..+.-..|-+.|.+.++.|.|+ +++||++.++..+....... .....+..+|++.+++.=+- +
T Consensus 335 vqeYd~hLg~i~~i~F~~~g~rFissSDdk-------s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN 407 (503)
T KOG0282|consen 335 VQEYDRHLGAILDITFVDEGRRFISSSDDK-------SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN 407 (503)
T ss_pred HHHHHhhhhheeeeEEccCCceEeeeccCc-------cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc
Confidence 433233444445556777788999999999 99999999886554332211 12445666778777664443 7
Q ss_pred eEEEEECCCC---eEEEEecccC--CceEE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 405 VIRVWEVEGG---EYMYSFRERI--GEEVI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 405 tIrlWD~~tG---~~l~tL~gh~--~~~V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
-|-|..+.-- ..-..++||. |..+. .|||||++|+|| .||.+.+||..
T Consensus 408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeech
Confidence 7877775432 1123567884 44354 799999999999 99999999964
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-21 Score=203.41 Aligned_cols=222 Identities=12% Similarity=0.126 Sum_probs=156.8
Q ss_pred eCCCCEEEEEeecC-CcceEEeeecceecCceEEEEeCC-CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceee
Q 046773 209 TLDGDIHVAVIDDV-ANETRTAHFGSVMDDGVLIDFTGC-SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMG 286 (453)
Q Consensus 209 S~D~tIkvWd~~~~-g~~~~~~~~~~v~~~~~~v~Fs~d-g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~ 286 (453)
+.++.|++|+.... -+..+.+|.+.|. .++|+|+ +.+ |||||.|++|+|||+.++.... ..+.. .
T Consensus 51 G~~gvI~L~~~~r~~~v~~L~gH~~~V~----~lafsP~~~~l---LASgS~DgtIrIWDi~t~~~~~-~~i~~-----p 117 (568)
T PTZ00420 51 GLIGAIRLENQMRKPPVIKLKGHTSSIL----DLQFNPCFSEI---LASGSEDLTIRVWEIPHNDESV-KEIKD-----P 117 (568)
T ss_pred CceeEEEeeecCCCceEEEEcCCCCCEE----EEEEcCCCCCE---EEEEeCCCeEEEEECCCCCccc-ccccc-----c
Confidence 34456678876441 1345666776654 4899997 564 8999999999999998753100 00000 1
Q ss_pred eeeeeeeccceeEEEEcCCc--e-EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcc
Q 046773 287 WRMLTEFTEFVGRVRVTSHE--S-AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRR 363 (453)
Q Consensus 287 w~~l~~h~~~v~~v~~s~~~--~-~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~ 363 (453)
..++.+|...|.+|+|+|+. + ++++.|++|+|||+++++.+.... +...+...+|+++|..+++++.|+
T Consensus 118 ~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~------- 189 (568)
T PTZ00420 118 QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGK------- 189 (568)
T ss_pred eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCC-------
Confidence 13577899999999999865 2 345678999999999987655443 333444556678889998888899
Q ss_pred eEEEEEcCCCeeEEEEEecCCCeeEEE-----EeeCCCeEEEEeC-----CeEEEEECCC-CeEEEEeccc--CCceEE-
Q 046773 364 LAIVRRVDTFEEVCRFSLRADRNVNVM-----GCMNQGYALMCVE-----GVIRVWEVEG-GEYMYSFRER--IGEEVI- 429 (453)
Q Consensus 364 ~i~Iw~~~tg~~v~~l~~~~~~v~~~~-----~~~~~~~lls~s~-----~tIrlWD~~t-G~~l~tL~gh--~~~~V~- 429 (453)
+++|||..+++.+.++..|...+.... ++++++++++++. ++|+|||+.+ ++++.++..+ .+. +.
T Consensus 190 ~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~-L~p 268 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP-LIP 268 (568)
T ss_pred EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc-eEE
Confidence 999999999999988888876543322 2367788887664 3899999995 6777766433 333 33
Q ss_pred EE-ecCCCEEEEE-eCCcEEEEecC
Q 046773 430 AF-VGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 430 a~-s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+ .+++.++++| .|++|++|++.
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEcc
Confidence 33 3457888899 99999999974
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=188.48 Aligned_cols=237 Identities=13% Similarity=0.181 Sum_probs=173.5
Q ss_pred eeCCCCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCC
Q 046773 133 YFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDG 212 (453)
Q Consensus 133 ~~~~~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~ 212 (453)
.|.+.-|.-+ ++|||.++.++||||.|.||+|+|+.+...+.+|-.|.+ .|.++.|++.
T Consensus 36 lF~~~aH~~s----itavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag--------sitaL~F~~~--------- 94 (362)
T KOG0294|consen 36 LFAFSAHAGS----ITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAG--------SITALKFYPP--------- 94 (362)
T ss_pred cccccccccc----eeEEEecceeEeccCCCCcEEEEeccchhhhcceecccc--------ceEEEEecCC---------
Confidence 4444567733 899999999999999999999999999999888875532 4565555432
Q ss_pred CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
-.. ..|.||+.|+.|.+|++.+-+++ +++++
T Consensus 95 ----------------------------------~S~-shLlS~sdDG~i~iw~~~~W~~~--------------~slK~ 125 (362)
T KOG0294|consen 95 ----------------------------------LSK-SHLLSGSDDGHIIIWRVGSWELL--------------KSLKA 125 (362)
T ss_pred ----------------------------------cch-hheeeecCCCcEEEEEcCCeEEe--------------eeecc
Confidence 100 02678999999999998665543 67889
Q ss_pred eccceeEEEEcCCce-EEE-EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc
Q 046773 293 FTEFVGRVRVTSHES-AVA-CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 293 h~~~v~~v~~s~~~~-~va-s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
|...|+.++++|.+. +++ ++|..+|+|||-+|+.-..... .+......+++.|++++.+..++ |-||..
T Consensus 126 H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~--------i~i~q~ 196 (362)
T KOG0294|consen 126 HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNK--------IDIYQL 196 (362)
T ss_pred cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccE--------EEEEec
Confidence 999999999998764 444 6788999999998854332211 11223467889999887766554 668877
Q ss_pred CCCeeEEEEEecCCCeeE-EEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEe----cCCCEEEEE-eC
Q 046773 371 DTFEEVCRFSLRADRNVN-VMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV----GDDRHVAAS-CG 443 (453)
Q Consensus 371 ~tg~~v~~l~~~~~~v~~-~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s----~d~~~lasg-~D 443 (453)
++......+.. + .+. .+-+.++.+++++.+ .+|++||..++.++..|.+|... |.++. |++.+|+|+ +|
T Consensus 197 d~A~v~~~i~~-~--~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~R-VK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 197 DNASVFREIEN-P--KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENR-VKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred ccHhHhhhhhc-c--ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhh-eeeeEEEecCCceEEEEeccC
Confidence 76432222221 1 122 233456788888888 99999999999999999999998 88665 677899999 99
Q ss_pred CcEEEEecC
Q 046773 444 TNIHLWDFG 452 (453)
Q Consensus 444 ~~IklWDl~ 452 (453)
|.|+|||+.
T Consensus 273 G~I~vWd~~ 281 (362)
T KOG0294|consen 273 GFIKVWDID 281 (362)
T ss_pred ceEEEEEcc
Confidence 999999985
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-22 Score=206.64 Aligned_cols=274 Identities=15% Similarity=0.174 Sum_probs=200.1
Q ss_pred EEEecC---CEEEEEeCCCcEEEEECCCCe------EEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEE
Q 046773 149 CLTLSD---LYLACGFADGAVRLFDLTTRL------HVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVA 217 (453)
Q Consensus 149 ~lafs~---~~LaSGS~D~TIrlWD~~tg~------~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvW 217 (453)
.||.|. ++|.||+.|++||+|++..-. ++.+++.|. ..|..++. .++.|+|+|.|-|||||
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs--------DWVNDiiL~~~~~tlIS~SsDtTVK~W 100 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS--------DWVNDIILCGNGKTLISASSDTTVKVW 100 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH--------hHHhhHHhhcCCCceEEecCCceEEEe
Confidence 577763 689999999999999985432 466666432 35665554 56789999999999999
Q ss_pred EeecCC---cceEEeeecceecCceEEEE-eCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeee-
Q 046773 218 VIDDVA---NETRTAHFGSVMDDGVLIDF-TGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLT- 291 (453)
Q Consensus 218 d~~~~g---~~~~~~~~~~v~~~~~~v~F-s~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~- 291 (453)
+....+ ..+++.|...|- .|+. .++.. ..|||+-|+.|.|||++++. ++.+ + -+.+.. ..|.
T Consensus 101 ~~~~~~~~c~stir~H~DYVk----cla~~ak~~~---lvaSgGLD~~IflWDin~~~~~l~~-s---~n~~t~-~sl~s 168 (735)
T KOG0308|consen 101 NAHKDNTFCMSTIRTHKDYVK----CLAYIAKNNE---LVASGGLDRKIFLWDINTGTATLVA-S---FNNVTV-NSLGS 168 (735)
T ss_pred ecccCcchhHhhhhcccchhe----eeeecccCce---eEEecCCCccEEEEEccCcchhhhh-h---cccccc-ccCCC
Confidence 987632 677888887764 3555 55544 37899999999999999984 1211 0 011100 1233
Q ss_pred eeccceeEEEEcCCceEEEEcC--CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEE
Q 046773 292 EFTEFVGRVRVTSHESAVACTS--SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~vas~d--~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
|+.+.|.+++..+.+.++++++ +.+|+||.++++.+..++||+..+.+.-++.+|.+++++|+|+ +||+||
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg-------tIrlWd 241 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG-------TIRLWD 241 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc-------eEEeee
Confidence 7889999999998877666655 6799999999988888899999998888999999999999999 999999
Q ss_pred cCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC-eEEEEecccCCceEEEEec---CCCEEEEEeCC
Q 046773 370 VDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG-EYMYSFRERIGEEVIAFVG---DDRHVAASCGT 444 (453)
Q Consensus 370 ~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG-~~l~tL~gh~~~~V~a~s~---d~~~lasg~D~ 444 (453)
+..-.|+.++..|.+.|-++..+++-.++.+++. +.|..=|+.+- ++...++ .... |..+.. |...=++..|+
T Consensus 242 LgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-~daP-v~~l~~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 242 LGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK-EDAP-VLKLHLHEHDNSVWVTTTDS 319 (735)
T ss_pred ccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec-CCCc-hhhhhhccccCCceeeeccc
Confidence 9999999999999998888888877777777765 88888888873 3333222 1122 332221 22222333677
Q ss_pred cEEEEec
Q 046773 445 NIHLWDF 451 (453)
Q Consensus 445 ~IklWDl 451 (453)
.|+=|-+
T Consensus 320 ~I~rW~~ 326 (735)
T KOG0308|consen 320 SIKRWKL 326 (735)
T ss_pred cceecCC
Confidence 8887754
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-20 Score=178.74 Aligned_cols=258 Identities=14% Similarity=0.105 Sum_probs=175.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeE-EEEeCCCCEEEEEeecCCcceEEeee
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQL-IFATLDGDIHVAVIDDVANETRTAHF 231 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~L-asgS~D~tIkvWd~~~~g~~~~~~~~ 231 (453)
+.++|++.|++|++||+.++++++++.++.. +.+++| +++.+ ++++.|++|++||..+ +........
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---------~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~ 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---------PRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---------CCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC
Confidence 5788999999999999999999999986432 234555 46665 6678899999999887 411111111
Q ss_pred cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE-
Q 046773 232 GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA- 310 (453)
Q Consensus 232 ~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va- 310 (453)
+ .+...++|+|+|+.+ +++++.|++|++||+++++.+. .+.. ...+..++++|++..++
T Consensus 72 ~---~~~~~~~~~~~g~~l--~~~~~~~~~l~~~d~~~~~~~~--------------~~~~-~~~~~~~~~~~dg~~l~~ 131 (300)
T TIGR03866 72 G---PDPELFALHPNGKIL--YIANEDDNLVTVIDIETRKVLA--------------EIPV-GVEPEGMAVSPDGKIVVN 131 (300)
T ss_pred C---CCccEEEECCCCCEE--EEEcCCCCeEEEEECCCCeEEe--------------EeeC-CCCcceEEECCCCCEEEE
Confidence 1 112247899999862 3456678999999999876431 1111 12346688998774333
Q ss_pred -EcC-CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEe-CCCccccCcceEEEEEcCCCeeEEEEEecCC---
Q 046773 311 -CTS-SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVDTFEEVCRFSLRAD--- 384 (453)
Q Consensus 311 -s~d-~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~--- 384 (453)
+.+ ..+.+||++++.+..... ........+|++++..++.++ .++ .+++||..+++++..+.++..
T Consensus 132 ~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~-------~v~i~d~~~~~~~~~~~~~~~~~~ 203 (300)
T TIGR03866 132 TSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGG-------TVSVIDVATRKVIKKITFEIPGVH 203 (300)
T ss_pred EecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCC-------EEEEEEcCcceeeeeeeecccccc
Confidence 333 357889999876544321 112223356788888775443 467 999999999988777654321
Q ss_pred --C--eeEEEEeeCCCeEEEE-eC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE--eCCcEEEEecC
Q 046773 385 --R--NVNVMGCMNQGYALMC-VE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 385 --~--v~~~~~~~~~~~lls~-s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
. ...+.+++++++++.+ ++ ++|.+||+++++.+..+.. ... ++ +|+||+++|+++ .+++|+|||+.
T Consensus 204 ~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~-~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 204 PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQR-VWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CCC-cceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 1 2346778888886544 34 8899999999988776532 223 44 788999998875 68999999975
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=176.35 Aligned_cols=235 Identities=13% Similarity=0.126 Sum_probs=180.3
Q ss_pred EEEEecCCCCCccccccceEEEEEEcC---CeEEEEeCCCCEEEEEeecCC-cceEE----eeecceecCceEEEEeCCC
Q 046773 176 HVRTFRPQHSDRLGQFSRAVSGIIITD---SQLIFATLDGDIHVAVIDDVA-NETRT----AHFGSVMDDGVLIDFTGCS 247 (453)
Q Consensus 176 ~~~tl~gh~~~~~~~~s~~V~~i~f~g---~~LasgS~D~tIkvWd~~~~g-~~~~~----~~~~~v~~~~~~v~Fs~dg 247 (453)
.++++.||.. .+..+++.+ ..|||+|.|++||+|+...+. ..+.+ +|.-.| ..|+++|+|
T Consensus 6 ~~~~~~gh~~--------r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsV----RsvAwsp~g 73 (312)
T KOG0645|consen 6 LEQKLSGHKD--------RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSV----RSVAWSPHG 73 (312)
T ss_pred eEEeecCCCC--------cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchhee----eeeeecCCC
Confidence 4677888764 577788764 379999999999999987511 12221 133222 259999999
Q ss_pred ceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCC-
Q 046773 248 RYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQ- 324 (453)
Q Consensus 248 ~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~- 324 (453)
++ ||+||+|.|+-||.-..++ | .+..+|.||...|.+|+++.++..+| |-|..|-+|.+..+
T Consensus 74 ~~---La~aSFD~t~~Iw~k~~~e-f-----------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd 138 (312)
T KOG0645|consen 74 RY---LASASFDATVVIWKKEDGE-F-----------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD 138 (312)
T ss_pred cE---EEEeeccceEEEeecCCCc-e-----------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence 96 9999999999999877666 1 01256889999999999998775444 55789999998854
Q ss_pred --ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC-C--CeeEEEEEecCCCeeEEEEeeCCCeEE
Q 046773 325 --GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD-T--FEEVCRFSLRADRNVNVMGCMNQGYAL 399 (453)
Q Consensus 325 --~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~-t--g~~v~~l~~~~~~v~~~~~~~~~~~ll 399 (453)
.|+-.+.+|+|.+....+.|.-+.|+++|+|. |||+|.-. . -+|++++.+|.+.|-++.|.+.|.+++
T Consensus 139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn-------TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN-------TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred cEEEEeeeccccccccEEEEcCCcceeEEeccCC-------eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 45555678998888788888889999999999 99999655 2 378999999988899999999999999
Q ss_pred EEeC-CeEEEEECCCCeEEEEecc-cCCceEEEEecCCCEEEEE-eCCcEEEEe
Q 046773 400 MCVE-GVIRVWEVEGGEYMYSFRE-RIGEEVIAFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 400 s~s~-~tIrlWD~~tG~~l~tL~g-h~~~~V~a~s~d~~~lasg-~D~~IklWD 450 (453)
+|++ +||+||-.-+ .+++ |... +..+.=+.-.|||+ .|+.|+|+.
T Consensus 212 s~sdD~tv~Iw~~~~-----~~~~~~sr~-~Y~v~W~~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 212 SCSDDGTVSIWRLYT-----DLSGMHSRA-LYDVPWDNGVIASGGGDDAIRLFK 259 (312)
T ss_pred EecCCcceEeeeecc-----Ccchhcccc-eEeeeecccceEeccCCCEEEEEE
Confidence 9998 9999998652 3333 4444 55444345578998 999999975
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=193.09 Aligned_cols=262 Identities=16% Similarity=0.132 Sum_probs=198.3
Q ss_pred EEEEEecC----CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD----LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~----~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~ 220 (453)
|.+|.||| ++.+|+| .++.|++..+...+++|.- |-..|.++.| ||+.|+.|...|.|+|.|..
T Consensus 29 vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~sr--------Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSR--------FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHh--------hccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 89999998 5666665 5788999998888777642 3345677777 59999999999999999965
Q ss_pred cCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 221 DVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 221 ~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
+.- +..+..|+..+. .+.|+|++.. .|++||.|+.+++||+.+.... ..+.+|++.|.+
T Consensus 99 ~r~iLR~~~ah~apv~----~~~f~~~d~t--~l~s~sDd~v~k~~d~s~a~v~--------------~~l~~htDYVR~ 158 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVH----VTKFSPQDNT--MLVSGSDDKVVKYWDLSTAYVQ--------------AELSGHTDYVRC 158 (487)
T ss_pred cHHHHHHHhhccCcee----EEEecccCCe--EEEecCCCceEEEEEcCCcEEE--------------EEecCCcceeEe
Confidence 511 455666766553 4789999876 5899999999999999988731 247799999999
Q ss_pred EEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC-ee
Q 046773 300 VRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF-EE 375 (453)
Q Consensus 300 v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~ 375 (453)
..++|.. ++++|.|++||+||+++......+-.|++.+....+-|+|..+++|++. .+||||+.+| +.
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn--------~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN--------SVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC--------eEEEEEecCCcee
Confidence 9998753 3455678999999999863222233466666556667778888776542 7999999976 44
Q ss_pred EEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEE
Q 046773 376 VCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHL 448 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~Ikl 448 (453)
+..+.-|--.|.++....++..|++++- +.||++|+.+-+.++.+. -.++ |- +++||++.++.| .||.+-+
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~p-vLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGP-VLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccc-eeeEEecCCCceEEEecccceeee
Confidence 4444436566888888888899998887 999999988888887764 2344 54 788999999999 9998765
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=200.33 Aligned_cols=224 Identities=18% Similarity=0.245 Sum_probs=169.8
Q ss_pred CeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-CCeEEEEeCCCCEEEEEe
Q 046773 144 GLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 144 ~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIkvWd~ 219 (453)
+.+.+.+.|-+ -.|++|+.|++|-||.+.+.+.+.+|+||.. .|.+++.. ...|+|||.|.|+|||-.
T Consensus 58 g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s--------nVC~ls~~~~~~~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 58 GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS--------NVCSLSIGEDGTLISGSWDSTAKVWRI 129 (745)
T ss_pred ceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccc--------ceeeeecCCcCceEecccccceEEecc
Confidence 34444355543 3699999999999999999999999999875 57777743 345899999999999987
Q ss_pred ecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 220 DDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 220 ~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
.. ....+.+|+..|. .|.+=|++. ++|||.|++||+|.- ++++ +++.+|++.|..
T Consensus 130 ~~-l~~~l~gH~asVW----Av~~l~e~~----~vTgsaDKtIklWk~--~~~l--------------~tf~gHtD~VRg 184 (745)
T KOG0301|consen 130 GE-LVYSLQGHTASVW----AVASLPENT----YVTGSADKTIKLWKG--GTLL--------------KTFSGHTDCVRG 184 (745)
T ss_pred hh-hhcccCCcchhee----eeeecCCCc----EEeccCcceeeeccC--Cchh--------------hhhccchhheee
Confidence 65 2355778888776 356666654 679999999999986 3322 456789999999
Q ss_pred EEEcCC-ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEE--ecCCEEEEEeCCCccccCcceEEEEEcCCCeeE
Q 046773 300 VRVTSH-ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVD--VNAEAYIVVENRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 300 v~~s~~-~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~--~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
+++-++ +.++++.|+.||+||+ +|+|+++..|| .+++++++ .++..+++.+-|+ ++|||..+ +|+
T Consensus 185 L~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDr-------tlriW~~~--e~~ 252 (745)
T KOG0301|consen 185 LAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDR-------TLRIWKKD--ECV 252 (745)
T ss_pred eEEecCCCeEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCc-------eEEEeecC--ceE
Confidence 998776 5566667899999999 67888776555 56666665 5667788888888 99999887 788
Q ss_pred EEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECC
Q 046773 377 CRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVE 412 (453)
Q Consensus 377 ~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~ 412 (453)
+.++.-.-.+-++..-++|+.++.||+|.||||-..
T Consensus 253 q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 253 QVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 887754433445544557777666777999999765
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-21 Score=196.16 Aligned_cols=226 Identities=19% Similarity=0.251 Sum_probs=174.4
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA- 223 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g- 223 (453)
|+++.++ +.+||.|-.+++|.|||+++.+.++++.++|. ..|.+++..+..+.+|+.|+.|..+|+....
T Consensus 220 vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~-------~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA-------SRVGSLAWNSSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred eEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC-------ceeEEEeccCceEEEecCCCcEEEEEEecchh
Confidence 8899998 57999999999999999999999999998544 2688899999999999999999999998732
Q ss_pred -cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 224 -NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 224 -~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
..++++|...|- -+.+++|+++ ||||+.|+.+.|||..+.+.. +++.+|++.|.++++
T Consensus 293 ~~~~~~~H~qeVC----gLkws~d~~~---lASGgnDN~~~Iwd~~~~~p~--------------~~~~~H~aAVKA~aw 351 (484)
T KOG0305|consen 293 VVSTLQGHRQEVC----GLKWSPDGNQ---LASGGNDNVVFIWDGLSPEPK--------------FTFTEHTAAVKALAW 351 (484)
T ss_pred hhhhhhcccceee----eeEECCCCCe---eccCCCccceEeccCCCcccc--------------EEEeccceeeeEeee
Confidence 234667766553 4899999996 899999999999999554411 346789999999999
Q ss_pred cCCc---eEEEE--cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEE
Q 046773 303 TSHE---SAVAC--TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC 377 (453)
Q Consensus 303 s~~~---~~vas--~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~ 377 (453)
+|-. +++++ .|.+||+||..++.++... +|+..|+
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----------------------------------------dtgsQVc 391 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----------------------------------------DTGSQVC 391 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcCCCcEeccc----------------------------------------ccCCcee
Confidence 9743 34442 3678999999887654321 1222222
Q ss_pred EEEecCCCeeEEEEeeCCCeEEEEeC---CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 378 RFSLRADRNVNVMGCMNQGYALMCVE---GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 378 ~l~~~~~~v~~~~~~~~~~~lls~s~---~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
++++++..+.++++-+ +.|.||+..+-+.+..|.||... |- +++|||..|++| .|.|+|+|++
T Consensus 392 ----------sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R-Vl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 392 ----------SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR-VLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred ----------eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcce-eEEEEECCCCCEEEEecccCcEEeccc
Confidence 3333334444555433 78899999988888889999888 66 678999999998 8999999986
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-21 Score=186.37 Aligned_cols=235 Identities=14% Similarity=0.108 Sum_probs=166.8
Q ss_pred ceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE
Q 046773 193 RAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV 272 (453)
Q Consensus 193 ~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~ 272 (453)
..|++|...++.|.||+.|++++|||.....+.++.+|++.+.. .+-..++.... .++|+|.|.|+++|-++-++.
T Consensus 106 DWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~---v~~v~~n~~~~-~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 106 DWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKS---VAWVIKNSSSC-LFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred hhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceee---eEEEecCCccc-eEEEecCCceEEEEEecCchh
Confidence 46777777788999999999999999876337788889887642 11122222211 378999999999999988872
Q ss_pred EecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCC-------------------------c
Q 046773 273 FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQ-------------------------G 325 (453)
Q Consensus 273 ~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~-------------------------~ 325 (453)
. +...+.-+||...|-+|...+++. +++|.|.+|+||+.++- .
T Consensus 182 ~----------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 182 K----------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred h----------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 1 001122348999999999877664 55677899999992210 0
Q ss_pred eEEEEeeccCCeEEEEEEec-CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-
Q 046773 326 MVLGERGYGRGLYVTSVDVN-AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE- 403 (453)
Q Consensus 326 ~~~~~~g~~~~~~v~~~~~~-g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~- 403 (453)
-+.++.||.. .|.++-++ ...+.++|-|- |||+||+.++.++.++.... ....+..++....+++++.
T Consensus 252 P~vtl~GHt~--~Vs~V~w~d~~v~yS~SwDH-------TIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 252 PLVTLEGHTE--PVSSVVWSDATVIYSVSWDH-------TIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred ceEEeccccc--ceeeEEEcCCCceEeecccc-------eEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCC
Confidence 1122356654 45665443 56678899999 99999999999888776443 2445555565566666555
Q ss_pred CeEEEEECCCC---eEEEEecccCCceEEEE--ec-CCCEEEEE-eCCcEEEEecC
Q 046773 404 GVIRVWEVEGG---EYMYSFRERIGEEVIAF--VG-DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 404 ~tIrlWD~~tG---~~l~tL~gh~~~~V~a~--s~-d~~~lasg-~D~~IklWDl~ 452 (453)
..|||||.+++ -..++|.||.++ |.++ +| +..+++|+ +|+++||||+.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nw-Vssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNW-VSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhh-hhheecCCCCceEEEEEecCCeEEEEEec
Confidence 99999999986 335789999998 8865 46 55678999 99999999985
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=173.23 Aligned_cols=265 Identities=16% Similarity=0.191 Sum_probs=193.4
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeC--CCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATL--DGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~--D~tIkvWd~~~~ 222 (453)
+.++.|++ ..|++.|.|.+|+|+|..+|++++++..++ +|+ .+..+.-....++.+|. |.|||.-++.+.
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk---yG~---~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK---YGV---DLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc---ccc---cEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 78999974 799999999999999999999999996432 332 12223334566777777 999999998773
Q ss_pred C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 223 A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 223 g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
- ++.+.+|...|. .+..+|-+.. ..|+|.|+|||+||+++.++.- .| +...-...+
T Consensus 91 kylRYF~GH~~~V~----sL~~sP~~d~---FlS~S~D~tvrLWDlR~~~cqg--------------~l--~~~~~pi~A 147 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVN----SLSVSPKDDT---FLSSSLDKTVRLWDLRVKKCQG--------------LL--NLSGRPIAA 147 (311)
T ss_pred ceEEEcCCCCceEE----EEEecCCCCe---EEecccCCeEEeeEecCCCCce--------------EE--ecCCCccee
Confidence 2 666778877765 4788888864 6799999999999999776320 00 011223468
Q ss_pred EcCCceEEEEc--CCcEEEEECCCCc-eEEE-Ee---eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 302 VTSHESAVACT--SSRVITFDLRNQG-MVLG-ER---GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 302 ~s~~~~~vas~--d~tIrlWDl~t~~-~~~~-~~---g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
|+|.+++.|.. ...|+|+|+++-+ -..+ .. +-..+-....|+++|..++..+..+ .+.|-|.-+|+
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-------~~~~lDAf~G~ 220 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-------FIYLLDAFDGT 220 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-------cEEEEEccCCc
Confidence 99999866643 3489999999742 1211 11 1111223467889999888888888 88999999999
Q ss_pred eEEEEEecCCCe---eEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc-cCCceEEEEecCCCE--EEEEeCCcEE
Q 046773 375 EVCRFSLRADRN---VNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE-RIGEEVIAFVGDDRH--VAASCGTNIH 447 (453)
Q Consensus 375 ~v~~l~~~~~~v---~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g-h~~~~V~a~s~d~~~--lasg~D~~Ik 447 (453)
.++++++.++.. ....|.||+.+++++++ ++|.+|++++|+....+.| +.+. +.++..+.++ .||+ |..+-
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~-~~~~~fnP~~~mf~sa-~s~l~ 298 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGP-VSCVRFNPRYAMFVSA-SSNLV 298 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCC-ccccccCCceeeeeec-CceEE
Confidence 999999887553 45678899999999988 9999999999999999998 4555 6655555554 4444 66777
Q ss_pred EE
Q 046773 448 LW 449 (453)
Q Consensus 448 lW 449 (453)
+|
T Consensus 299 fw 300 (311)
T KOG1446|consen 299 FW 300 (311)
T ss_pred EE
Confidence 77
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-21 Score=201.87 Aligned_cols=280 Identities=11% Similarity=0.168 Sum_probs=181.1
Q ss_pred CCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCc-cccc-cceEEEEEEc-----CC--eEE
Q 046773 138 DVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDR-LGQF-SRAVSGIIIT-----DS--QLI 206 (453)
Q Consensus 138 gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~-~~~~-s~~V~~i~f~-----g~--~La 206 (453)
.|.+ + |+|+.|| |+|||||+-|+-||||.+..-+..+.-.+-.... +... ...+..+..+ ++ ..-
T Consensus 265 ah~g--a--Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 265 AHKG--A--IWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccCC--c--EEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 7873 4 6788887 5799999999999999997643311111000000 0000 0000000000 01 111
Q ss_pred EEeCCCCEEEEEe----ecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCc
Q 046773 207 FATLDGDIHVAVI----DDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHN 282 (453)
Q Consensus 207 sgS~D~tIkvWd~----~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~ 282 (453)
.++....+.+-+. ...-++.+.+|++.|.+ |..|.++- |.|+|+|+|||||++.+.+||.
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILD----lSWSKn~f----LLSSSMDKTVRLWh~~~~~CL~-------- 404 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILD----LSWSKNNF----LLSSSMDKTVRLWHPGRKECLK-------- 404 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhhee----cccccCCe----eEeccccccEEeecCCCcceee--------
Confidence 1222222211111 10003556788887753 77777743 7899999999999999888653
Q ss_pred ceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccc
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELEN 359 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~ 359 (453)
.-.|.++|.||+|+|.. .+++|-|+.||||++...+...-...+ .-+...||.|+|+..+.|+..|
T Consensus 405 -------~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G--- 473 (712)
T KOG0283|consen 405 -------VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNG--- 473 (712)
T ss_pred -------EEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEecc---
Confidence 22688999999999832 466678999999999876543221111 1233467899999999999999
Q ss_pred cCcceEEEEEcCCCeeEEEEEec--------CCCeeEEEEeeC-C-CeEEEEeCCeEEEEECCCCeEEEEecccCCc--e
Q 046773 360 QNRRLAIVRRVDTFEEVCRFSLR--------ADRNVNVMGCMN-Q-GYALMCVEGVIRVWEVEGGEYMYSFRERIGE--E 427 (453)
Q Consensus 360 ~~~~~i~Iw~~~tg~~v~~l~~~--------~~~v~~~~~~~~-~-~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~--~ 427 (453)
.+++++...-+.++.+..+ ...|.++.++|. . +.|+++.|..|||.|..+-..+..|.|+... .
T Consensus 474 ----~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ 549 (712)
T KOG0283|consen 474 ----YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ 549 (712)
T ss_pred ----EEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcc
Confidence 9999988765544443222 123667777752 3 3455566699999999998999999987532 3
Q ss_pred EE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 428 VI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 428 V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+. +|+.||++|+++ .|.-|.||++.
T Consensus 550 ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 550 ISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred eeeeEccCCCEEEEeecCceEEEEeCC
Confidence 44 788999999999 99999999973
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=201.90 Aligned_cols=223 Identities=16% Similarity=0.190 Sum_probs=172.6
Q ss_pred CCeEEEEeCCCCEEEEEeecC-C------cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe
Q 046773 202 DSQLIFATLDGDIHVAVIDDV-A------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV 274 (453)
Q Consensus 202 g~~LasgS~D~tIkvWd~~~~-g------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~ 274 (453)
++.|.||+.|++|++|++... + +..+..|..++.+ ++...+|+. |+|+|.|.||++|++..+..+
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVND----iiL~~~~~t---lIS~SsDtTVK~W~~~~~~~~- 108 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVND----IILCGNGKT---LISASSDTTVKVWNAHKDNTF- 108 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhh----HHhhcCCCc---eEEecCCceEEEeecccCcch-
Confidence 566999999999999998641 1 2344557776642 455566764 889999999999999876422
Q ss_pred cccccCCcceeeeeeeeeeccceeEEEE-cCCceEEEE--cCCcEEEEECCCCce--EEEE-------eeccCCeEEEEE
Q 046773 275 GGDLTDHNTVMGWRMLTEFTEFVGRVRV-TSHESAVAC--TSSRVITFDLRNQGM--VLGE-------RGYGRGLYVTSV 342 (453)
Q Consensus 275 g~~l~~~~~v~~w~~l~~h~~~v~~v~~-s~~~~~vas--~d~tIrlWDl~t~~~--~~~~-------~g~~~~~~v~~~ 342 (453)
+..+++.|.++|.|+++ -++..+++| -|..|.|||+.++.. +... .+.++...+++|
T Consensus 109 -----------c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 109 -----------CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred -----------hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 12568899999999998 555544444 478999999998722 2111 122344556777
Q ss_pred EecCC--EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEE
Q 046773 343 DVNAE--AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYS 419 (453)
Q Consensus 343 ~~~g~--~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~t 419 (453)
+.+.+ .+++|+-.+ .+++||-.+.+.+..+.+|.+.|+.+....+|++++++|+ +||||||+..-+|+.|
T Consensus 178 A~N~t~t~ivsGgtek-------~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEK-------DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT 250 (735)
T ss_pred ecCCcceEEEecCccc-------ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee
Confidence 65555 666666666 9999999999999999999999999999999999998887 9999999999999999
Q ss_pred ecccCCceEEEEe--cCCCEEEEE-eCCcEEEEec
Q 046773 420 FRERIGEEVIAFV--GDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 420 L~gh~~~~V~a~s--~d~~~lasg-~D~~IklWDl 451 (453)
+..|.+. ||++. |+=.++.+| .|+.|..=|+
T Consensus 251 ~~vH~e~-VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 251 YIVHKEG-VWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred EEeccCc-eEEEeeCCCcceEEecCCCCcEEeccc
Confidence 9999999 99775 555688899 9999876554
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-22 Score=185.53 Aligned_cols=243 Identities=15% Similarity=0.170 Sum_probs=183.8
Q ss_pred EEeeCCCCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEE
Q 046773 131 NLYFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFA 208 (453)
Q Consensus 131 ~~~~~~~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~Lasg 208 (453)
+..|+ ||. ..||-.||.=+..+.||++.|=|.||||.-||..+++|. | .+ -|++++|+ ...|++|
T Consensus 52 igtfe--ghk--gavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-h-kh-------ivk~~af~~ds~~lltg 118 (334)
T KOG0278|consen 52 IGTFE--GHK--GAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-H-KH-------IVKAVAFSQDSNYLLTG 118 (334)
T ss_pred EEeee--ccC--cceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-h-hh-------eeeeEEecccchhhhcc
Confidence 44543 898 456555554445689999999999999999999999997 3 32 57889996 4579999
Q ss_pred eCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceee
Q 046773 209 TLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMG 286 (453)
Q Consensus 209 S~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~ 286 (453)
+.++-+||+|++.+- ..-+.+|++.|. .+-|....+. +.|.+.|+|||+||.+||....
T Consensus 119 g~ekllrvfdln~p~App~E~~ghtg~Ir----~v~wc~eD~~---iLSSadd~tVRLWD~rTgt~v~------------ 179 (334)
T KOG0278|consen 119 GQEKLLRVFDLNRPKAPPKEISGHTGGIR----TVLWCHEDKC---ILSSADDKTVRLWDHRTGTEVQ------------ 179 (334)
T ss_pred chHHHhhhhhccCCCCCchhhcCCCCcce----eEEEeccCce---EEeeccCCceEEEEeccCcEEE------------
Confidence 999999999998754 334566777654 2445444343 5577999999999999998431
Q ss_pred eeeeeeeccceeEEEEcCCceEEEEcC-CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 287 WRMLTEFTEFVGRVRVTSHESAVACTS-SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 287 w~~l~~h~~~v~~v~~s~~~~~vas~d-~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
+| ....+|+++-+++++.++.-.+ ++|+.||..+-+.++...-. -.+...++.|..+.++.+..|. -+
T Consensus 180 --sL-~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~-------~~ 248 (334)
T KOG0278|consen 180 --SL-EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDF-------KV 248 (334)
T ss_pred --EE-ecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcce-------EE
Confidence 11 2346799999998887776555 68999999997766543211 1223345778888888888888 88
Q ss_pred EEEEcCCCeeEEEE-EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeE
Q 046773 366 IVRRVDTFEEVCRF-SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEY 416 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l-~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~ 416 (453)
..+|.+||+++..+ .+|...|..+.|+|+|..-+++|. ||||||.+.-++.
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 88999999998886 788888999999999988777777 9999999987654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=177.90 Aligned_cols=260 Identities=14% Similarity=0.171 Sum_probs=179.1
Q ss_pred CCeEEEEEEecC---CEEEEEeCCCcEEEEECCC-CeEE-EEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEE
Q 046773 143 DGLTCRCLTLSD---LYLACGFADGAVRLFDLTT-RLHV-RTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIH 215 (453)
Q Consensus 143 d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~t-g~~~-~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIk 215 (453)
|+ |.+|+||| .+|+.||+|+|||+|+++. |... +....|.+ .|-+++++ |.++++|++|+.+|
T Consensus 28 Ds--IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~--------PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 28 DS--ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDG--------PVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred cc--hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCC--------CeEEEEEccCCceEEeeccCCceE
Confidence 56 78999998 3788999999999999987 4432 22222222 46667774 78999999999999
Q ss_pred EEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeec
Q 046773 216 VAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT 294 (453)
Q Consensus 216 vWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~ 294 (453)
+||+.+ + ......|.+.|. .++|=+...+ -.|++||.|+|||.||.+....... ....
T Consensus 98 ~wDL~S-~Q~~~v~~Hd~pvk----t~~wv~~~~~-~cl~TGSWDKTlKfWD~R~~~pv~t---------------~~LP 156 (347)
T KOG0647|consen 98 LWDLAS-GQVSQVAAHDAPVK----TCHWVPGMNY-QCLVTGSWDKTLKFWDTRSSNPVAT---------------LQLP 156 (347)
T ss_pred EEEccC-CCeeeeeeccccee----EEEEecCCCc-ceeEecccccceeecccCCCCeeee---------------eecc
Confidence 999998 5 444555766543 2454443322 2489999999999999997662210 1223
Q ss_pred cceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEE-e-eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC
Q 046773 295 EFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGE-R-GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 295 ~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~-~-g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
+.|.+.-+-..-.+++..+..|.+++|+++...... . .-..+..+.+...+.+..++||-.| -+-|..++.
T Consensus 157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG-------rv~iq~id~ 229 (347)
T KOG0647|consen 157 ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG-------RVAIQYIDD 229 (347)
T ss_pred ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc-------eEEEEecCC
Confidence 445554333334677788899999999876433221 1 0011234455557778889999999 888888887
Q ss_pred CeeEE--EEEecCC---------CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEE
Q 046773 373 FEEVC--RFSLRAD---------RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHV 438 (453)
Q Consensus 373 g~~v~--~l~~~~~---------~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~l 438 (453)
+.... +|..|.+ .|.++.|+|.-+.++++++ |++-.||-.....|.+.+-|... |. +|..+|.+.
T Consensus 230 ~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qp-Itcc~fn~~G~if 308 (347)
T KOG0647|consen 230 PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQP-ITCCSFNRNGSIF 308 (347)
T ss_pred CCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCc-cceeEecCCCCEE
Confidence 63333 3444431 1556789998888887666 99999999988888888878777 77 677899887
Q ss_pred EEE
Q 046773 439 AAS 441 (453)
Q Consensus 439 asg 441 (453)
|=+
T Consensus 309 aYA 311 (347)
T KOG0647|consen 309 AYA 311 (347)
T ss_pred EEE
Confidence 643
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=177.61 Aligned_cols=246 Identities=13% Similarity=0.111 Sum_probs=174.3
Q ss_pred CCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||. |+ |+|+.|| +.+||||..++.|+||++.||....+|-..-. .+.=+... ++.|+.|+.|+.
T Consensus 104 gHK--DS--Vt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~--------dieWl~WHp~a~illAG~~DGs 171 (399)
T KOG0296|consen 104 GHK--DS--VTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE--------DIEWLKWHPRAHILLAGSTDGS 171 (399)
T ss_pred CCC--Cc--eEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccC--------ceEEEEecccccEEEeecCCCc
Confidence 899 67 5666665 68999999999999999999999888852111 11113333 678999999999
Q ss_pred EEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE-Ee-c----ccccC-Cccee
Q 046773 214 IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV-FV-G----GDLTD-HNTVM 285 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~-~~-g----~~l~~-~~~v~ 285 (453)
+-+|.+...+ .+.+.+|...... =.|.|||+. +++|..|+||++||.+||+. +. + ..++- .....
T Consensus 172 vWmw~ip~~~~~kv~~Gh~~~ct~----G~f~pdGKr---~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~ 244 (399)
T KOG0296|consen 172 VWMWQIPSQALCKVMSGHNSPCTC----GEFIPDGKR---ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLA 244 (399)
T ss_pred EEEEECCCcceeeEecCCCCCccc----ccccCCCce---EEEEecCceEEEEecCCCceeEEecccccCcCCccccccc
Confidence 9999987733 5677777654432 258899997 78999999999999999982 21 1 00100 00000
Q ss_pred ee------------------------------eeeeeeccceeEEEEcCCc-----eEEEEcCCcEEEEECCCCceEEEE
Q 046773 286 GW------------------------------RMLTEFTEFVGRVRVTSHE-----SAVACTSSRVITFDLRNQGMVLGE 330 (453)
Q Consensus 286 ~w------------------------------~~l~~h~~~v~~v~~s~~~-----~~vas~d~tIrlWDl~t~~~~~~~ 330 (453)
+| +...++...+.+|.+.|-. .++++-|++|-|||+.+-...+..
T Consensus 245 ~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c 324 (399)
T KOG0296|consen 245 GSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC 324 (399)
T ss_pred cceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec
Confidence 00 0111333334445443321 134456899999999975432222
Q ss_pred eeccCCeEEEEEEecC-CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEE
Q 046773 331 RGYGRGLYVTSVDVNA-EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRV 408 (453)
Q Consensus 331 ~g~~~~~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrl 408 (453)
.| ...|..+-+.+ ..+++++.+| ++++||..||+++.+.++|...|...+.+++.+.++++|+ ++.+|
T Consensus 325 -~h--e~~V~~l~w~~t~~l~t~c~~g-------~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 325 -EH--EDGVTKLKWLNTDYLLTACANG-------KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred -cC--CCceEEEEEcCcchheeeccCc-------eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence 23 33467776666 6788899999 9999999999999999999999999999999999999998 99999
Q ss_pred EECC
Q 046773 409 WEVE 412 (453)
Q Consensus 409 WD~~ 412 (453)
.++.
T Consensus 395 F~v~ 398 (399)
T KOG0296|consen 395 FEVP 398 (399)
T ss_pred EecC
Confidence 9864
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-21 Score=189.30 Aligned_cols=228 Identities=11% Similarity=0.170 Sum_probs=178.1
Q ss_pred EEEEE--EcCCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 195 VSGII--ITDSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 195 V~~i~--f~g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
|..|. ++|++|++||..|..-+|+..+.- ...++.|...|. .+..+++|.| ++||+.|+.||+|+.+-..
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr----~m~ws~~g~w---miSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVR----TMKWSHNGTW---MISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccce----eEEEccCCCE---EEEcCCCceEEecccchhh
Confidence 34454 468899999999999999965411 234556655443 4789999998 8899999999999986544
Q ss_pred EEecccccCCcceeeeeeeee-eccceeEEEEcCC-ceEEE-EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCE
Q 046773 272 VFVGGDLTDHNTVMGWRMLTE-FTEFVGRVRVTSH-ESAVA-CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEA 348 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~-h~~~v~~v~~s~~-~~~va-s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~ 348 (453)
. +.... |...|.+|+|+|+ ..+++ |+|++|||||....+....+.||+-.+......|.-..
T Consensus 172 V---------------k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgL 236 (464)
T KOG0284|consen 172 V---------------KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGL 236 (464)
T ss_pred h---------------HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccce
Confidence 1 12223 4488999999974 34555 56789999999876554555777654433333455566
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCce
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEE 427 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~ 427 (453)
++++|.|. .||+||..+|+|++++..|.+.|..+.|.+++.+|+++|- ..+|+.|+.+=+.+.+++||...
T Consensus 237 iasgskDn-------lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd- 308 (464)
T KOG0284|consen 237 IASGSKDN-------LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD- 308 (464)
T ss_pred eEEccCCc-------eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-
Confidence 78888887 9999999999999999999999999999999999998887 99999999999999999999999
Q ss_pred EEEE--ec-CCCEEEEE-eCCcEEEEecC
Q 046773 428 VIAF--VG-DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 428 V~a~--s~-d~~~lasg-~D~~IklWDl~ 452 (453)
|+++ +| ....+++| .|+.|..|.++
T Consensus 309 v~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 309 VTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred heeeccccccccceeeccCCCceEEEecc
Confidence 8865 67 55578888 99999999875
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=181.60 Aligned_cols=232 Identities=20% Similarity=0.267 Sum_probs=164.6
Q ss_pred CCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEE
Q 046773 138 DVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIH 215 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIk 215 (453)
+|. +.++..++..+++|||||..|..|.|||.+|++.+++|.+|.. .|.+++|- .+.|+++|.|++||
T Consensus 200 ~h~--keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~--------~V~~L~fr~gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 200 GHV--KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG--------AVSSLAFRKGTSELYSASADRSVK 269 (479)
T ss_pred ccc--ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccc--------ceeeeeeecCccceeeeecCCceE
Confidence 787 5655555555568999999999999999999999999998765 68889985 46799999999999
Q ss_pred EEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeec
Q 046773 216 VAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT 294 (453)
Q Consensus 216 vWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~ 294 (453)
||+++.-. +.++-+|...|.. |+-...++ .+-.|..|+|+|||++.....+ +.++|.
T Consensus 270 vw~~~~~s~vetlyGHqd~v~~----IdaL~reR---~vtVGgrDrT~rlwKi~eesql---------------ifrg~~ 327 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGHQDGVLG----IDALSRER---CVTVGGRDRTVRLWKIPEESQL---------------IFRGGE 327 (479)
T ss_pred EEehhHhHHHHHHhCCccceee----echhcccc---eEEeccccceeEEEecccccee---------------eeeCCC
Confidence 99998733 5677778765532 33223333 2446779999999999544321 123555
Q ss_pred cceeEEEEc-CCceEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC
Q 046773 295 EFVGRVRVT-SHESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 295 ~~v~~v~~s-~~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
+.+-||+|- .+..+++|+++.|-||++.+.+-+.+. ..|+ + .+.. +.
T Consensus 328 ~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg--v-----~~~~--------~~---------------- 376 (479)
T KOG0299|consen 328 GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG--V-----IPEL--------DP---------------- 376 (479)
T ss_pred CCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccc--c-----cCCc--------cc----------------
Confidence 677888874 555677788899999999987655443 2222 1 0100 00
Q ss_pred CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC----eEEEEecccCCceEE--EEecCCCEEEEE
Q 046773 373 FEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG----EYMYSFRERIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 373 g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG----~~l~tL~gh~~~~V~--a~s~d~~~lasg 441 (453)
..++.|+.+++.++....++++|. |.||||-+++| +.++.|+ -.+. |+ +|+++|++|+.|
T Consensus 377 -------~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~Gf-VNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 377 -------VNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGF-VNSLAFSNSGKRIVAG 443 (479)
T ss_pred -------cccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccE-EEEEEEccCCCEEEEe
Confidence 012357888888888777777776 99999999998 4455554 2345 88 567899977665
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=186.54 Aligned_cols=224 Identities=14% Similarity=0.145 Sum_probs=169.9
Q ss_pred EEEEEE--cCCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 195 VSGIII--TDSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 195 V~~i~f--~g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
|..+.| +.+.|++|+.|.-|++|++.... +.++.+..+.+. .++|+++++. +.+.|.|++++|||+..
T Consensus 178 v~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it----~~d~d~~~~~---~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNIT----SIDFDSDNKH---VIAASNDKNLRLWNVDS 250 (459)
T ss_pred cceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcc----eeeecCCCce---EEeecCCCceeeeeccc
Confidence 334554 23689999999999999997622 345555444443 4899999986 55678999999999988
Q ss_pred CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecC
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNA 346 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g 346 (453)
.+.. +||.||++.|.++.|.-.. .++++.|.|||+|||....|.++. .+. .+..+...+
T Consensus 251 ~r~~--------------~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S----~cnDI~~~~ 312 (459)
T KOG0288|consen 251 LRLR--------------HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS----QCNDIVCSI 312 (459)
T ss_pred hhhh--------------hhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc----cccceEecc
Confidence 8743 6788999999999886332 455677899999999998887764 221 122222223
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEeccc--
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRER-- 423 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh-- 423 (453)
..++|+-.|+ ++|.||..++.++.++.++. .|.++..++++..+++++- .++++-|+.+-+..+++...
T Consensus 313 ~~~~SgH~Dk-------kvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~ 384 (459)
T KOG0288|consen 313 SDVISGHFDK-------KVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF 384 (459)
T ss_pred eeeeeccccc-------ceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence 3455555566 99999999999998888776 7889999999999998875 99999999998888877532
Q ss_pred ---CCceEE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 424 ---IGEEVI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 424 ---~~~~V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.++ -. .||||+.++++| .|+.|+||++.
T Consensus 385 k~asDw-trvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 385 KCASDW-TRVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred cccccc-ceeEECCCCceeeeccCCCcEEEEEcc
Confidence 122 22 689999999999 99999999863
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=174.16 Aligned_cols=267 Identities=16% Similarity=0.173 Sum_probs=190.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEe
Q 046773 154 DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTA 229 (453)
Q Consensus 154 ~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~ 229 (453)
...|+|.-.|+|++. +.++.|.||..+ |.-++.+ -..+.++|.|.|.+||.+++ | +.++++
T Consensus 124 tsrivssFk~~t~~~------~lvre~~GHkDG--------iW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~G 188 (481)
T KOG0300|consen 124 TSRIVSSFKDGTVKF------RLVRELEGHKDG--------IWHVAADSTQPICGTASADHTARIWSLES-GACLATYTG 188 (481)
T ss_pred cchheeeecCCceeE------eehhhhcccccc--------eeeehhhcCCcceeecccccceeEEeecc-ccceeeecc
Confidence 356888888888763 557778887653 3334433 23688999999999999998 5 778899
Q ss_pred eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEee------CCCCcEEecccc-------------c------CCcce
Q 046773 230 HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWD------RQAEEVFVGGDL-------------T------DHNTV 284 (453)
Q Consensus 230 ~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD------~~tg~~~~g~~l-------------~------~~~~v 284 (453)
|+|.|. .|.|++.+.. ++++|.|.|..||- +.....-.+|+- . +..++
T Consensus 189 H~GSVN----sikfh~s~~L---~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 189 HTGSVN----SIKFHNSGLL---LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred ccccee----eEEeccccce---EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 999876 5999999885 78999999999997 222111111100 0 00011
Q ss_pred ee-eeeeeeeccceeEEEE--cCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccC
Q 046773 285 MG-WRMLTEFTEFVGRVRV--TSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQN 361 (453)
Q Consensus 285 ~~-w~~l~~h~~~v~~v~~--s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~ 361 (453)
+. +-.|++|.+.|.+... .++..+.+|.|.|.-|||++++..+..+.||.+...=.+-.|....+++.|.|.
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt----- 336 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT----- 336 (481)
T ss_pred eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCc-----
Confidence 10 1236788777765432 345567789999999999999988777888877665455567667778888888
Q ss_pred cceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC-eEEEEecccCCceEE--EEecCCC
Q 046773 362 RRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG-EYMYSFRERIGEEVI--AFVGDDR 436 (453)
Q Consensus 362 ~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG-~~l~tL~gh~~~~V~--a~s~d~~ 436 (453)
+.|+||.... +.+..|++|.+.|.+++|..++ .++++++ .||||||+..= ..|.|++ ++..++ +++-..+
T Consensus 337 --TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~ 411 (481)
T KOG0300|consen 337 --TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHP 411 (481)
T ss_pred --eeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCc
Confidence 9999998732 4577789999999999988764 4677787 99999999863 4566664 344366 5556666
Q ss_pred EEEEE-eCCcEEEEecC
Q 046773 437 HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 437 ~lasg-~D~~IklWDl~ 452 (453)
+||.- ....|+|+|+.
T Consensus 412 iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 412 IIAIPHDNRQVRLFDLN 428 (481)
T ss_pred eEEeccCCceEEEEecC
Confidence 77776 56789999974
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-18 Score=164.91 Aligned_cols=230 Identities=14% Similarity=0.161 Sum_probs=169.9
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeC--CCeEEEeeCCC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLA--GRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~--D~tIrvWD~~t 269 (453)
.|.+|.|+ |..|+++|.|.+++|+|... |.+..+.+.-.- ....+.|...... +..+|. |.|||.-++.+
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~skky--G~~~~~Fth~~~~---~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKY--GVDLACFTHHSNT---VIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEeecccc--cccEEEEecCCce---EEEccCCCCCceEEEEeec
Confidence 57788885 77899999999999999887 533333222110 0012455444332 333454 99999999999
Q ss_pred CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~ 347 (453)
.+.+ +.+.||...|+++.++|.+ .+++|-|.+|||||+++.+|...+. .....+.+|+|+|-
T Consensus 90 Nkyl--------------RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~GL 153 (311)
T KOG1446|consen 90 NKYL--------------RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPEGL 153 (311)
T ss_pred CceE--------------EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCCCc
Confidence 8843 3467899999999999744 4555678999999999888765442 22345688999888
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCC--eeEEEEEec---CCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEec
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTF--EEVCRFSLR---ADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg--~~v~~l~~~---~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~ 421 (453)
.+|++.... .|+|+|+... .+-.++... ......+-|+++|++++.+.. +.+.|-|.-+|..+.++.
T Consensus 154 ifA~~~~~~-------~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 154 IFALANGSE-------LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred EEEEecCCC-------eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence 888887777 8999998753 344555443 122457889999999998888 999999999999999999
Q ss_pred ccCCce---EE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 422 ERIGEE---VI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 422 gh~~~~---V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++.... +. +|+||++.|.+| .||+|.+|++.
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 886552 23 688999999999 99999999974
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-20 Score=177.30 Aligned_cols=228 Identities=15% Similarity=0.134 Sum_probs=173.5
Q ss_pred EEEcCCeEEEEeCCCCEEEEEeecCC-c-ceE--Eeeecc-eecCce-EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 198 IIITDSQLIFATLDGDIHVAVIDDVA-N-ETR--TAHFGS-VMDDGV-LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 198 i~f~g~~LasgS~D~tIkvWd~~~~g-~-~~~--~~~~~~-v~~~~~-~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
+++||..|+|||.|+-|.|||..+ | + .-+ +....- +..+.+ .+.||-|+.+ |||||-|+.||||-++||+
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM---lAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM---LASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred eCCCCceEeeccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeecccHHH---hhccCcCCcEEEEEEecch
Confidence 556788999999999999999887 5 1 111 111110 112333 3899999986 8999999999999999999
Q ss_pred EEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEE
Q 046773 272 VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAY 349 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l 349 (453)
|++. .=+.|+.-|.+++|+-++ ++++|-|.+||+--+.+|+|++.++||..-+.-.-|..+|..+
T Consensus 297 ClRr-------------FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 297 CLRR-------------FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHI 363 (508)
T ss_pred HHHH-------------hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeE
Confidence 6531 124788889999998654 5667788999999999999988778876433334478889999
Q ss_pred EEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC--eeEEEEee-CCCeEEEEeC-CeEEEEECCCCeEEEEeccc--
Q 046773 350 IVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR--NVNVMGCM-NQGYALMCVE-GVIRVWEVEGGEYMYSFRER-- 423 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~--v~~~~~~~-~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh-- 423 (453)
+++|+|+ ++|||+..|++|+.+|..-+.. |.++...| ++..++.|.- +||.|=++. |+.++++..-
T Consensus 364 isaSsDg-------tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR 435 (508)
T KOG0275|consen 364 ISASSDG-------TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR 435 (508)
T ss_pred EEecCCc-------cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc
Confidence 9999999 9999999999999988654422 66666555 6778888887 999999985 8888888532
Q ss_pred -CCceEE-EEecCCCEEEEE-eCCcEEEEe
Q 046773 424 -IGEEVI-AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 424 -~~~~V~-a~s~d~~~lasg-~D~~IklWD 450 (453)
.+..|. +++|.|.+|-+. +|+.+..+.
T Consensus 436 EgGdFi~~~lSpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred cCCceEEEEecCCCcEEEEEccCcEEEEEE
Confidence 122366 678999999776 998877654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=166.22 Aligned_cols=255 Identities=16% Similarity=0.227 Sum_probs=181.3
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-CCeEEEEeCCCCEEEEEeecCC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIkvWd~~~~g 223 (453)
|..+.|++ ..|+.+|+|+++|++|+.+.+....|+ |.. .+-..+|- ...+++|+.|+.||+.|+++ +
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~--------plL~c~F~d~~~~~~G~~dg~vr~~Dln~-~ 85 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGA--------PLLDCAFADESTIVTGGLDGQVRRYDLNT-G 85 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCC--------ceeeeeccCCceEEEeccCceEEEEEecC-C
Confidence 78999995 466677799999999999998777776 332 46667775 46799999999999999998 4
Q ss_pred -cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 224 -NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 224 -~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
...+..|...+. .|.+++--. .++|||+|++||+||.+..... +. ..-...|.++.+
T Consensus 86 ~~~~igth~~~i~----ci~~~~~~~---~vIsgsWD~~ik~wD~R~~~~~-~~--------------~d~~kkVy~~~v 143 (323)
T KOG1036|consen 86 NEDQIGTHDEGIR----CIEYSYEVG---CVISGSWDKTIKFWDPRNKVVV-GT--------------FDQGKKVYCMDV 143 (323)
T ss_pred cceeeccCCCceE----EEEeeccCC---eEEEcccCccEEEEeccccccc-cc--------------cccCceEEEEec
Confidence 233334544332 356654321 3789999999999999874421 10 011246888888
Q ss_pred cCCceEEEEcCCcEEEEECCCCceEEEE--eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeE----
Q 046773 303 TSHESAVACTSSRVITFDLRNQGMVLGE--RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEV---- 376 (453)
Q Consensus 303 s~~~~~vas~d~tIrlWDl~t~~~~~~~--~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v---- 376 (453)
.++.+++++.+..|.+|||++.....+. ..-.-+....++-|++++++++|-+| -+-|=..+.-++.
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG-------RVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG-------RVAVEYFDDSEEAQSKK 216 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc-------eEEEEccCCchHHhhhc
Confidence 9999999999999999999987543321 11111223444557889999999999 6666566654322
Q ss_pred EEEEecCCC---------eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE
Q 046773 377 CRFSLRADR---------NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 377 ~~l~~~~~~---------v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg 441 (453)
..|..|+.. |.++.|+|-.+.++++++ |.|-+||+.+.+.|..|..-... |- +|+-||..||.+
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~S-I~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETS-ISSLSFSMDGSLLAIA 292 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCc-eEEEEeccCCCeEEEE
Confidence 234444311 667888887777888776 99999999999999998766555 54 777899999876
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=170.52 Aligned_cols=228 Identities=15% Similarity=0.162 Sum_probs=156.5
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCC-eEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTR-LHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg-~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~ 219 (453)
...++.++ +.+++++.||++||||+.-. ..++.|+.|..+ |-++... .+.++++|.|+|||+|+-
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E--------V~Svdwn~~~r~~~ltsSWD~TiKLW~~ 134 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE--------VYSVDWNTVRRRIFLTSSWDGTIKLWDP 134 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh--------eEEeccccccceeEEeeccCCceEeecC
Confidence 44566665 58999999999999996433 357778877654 4445433 456778899999999997
Q ss_pred ecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC-CcEEecccccCCcceeeeeeeeeeccce
Q 046773 220 DDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA-EEVFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 220 ~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t-g~~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
+-+. ++|+.+|..-|. ...|+|.-. +.++|+|.|++.||||++. |+.. .+..|...+
T Consensus 135 ~r~~Sv~Tf~gh~~~Iy----~a~~sp~~~--nlfas~Sgd~~l~lwdvr~~gk~~---------------~i~ah~~Ei 193 (311)
T KOG0277|consen 135 NRPNSVQTFNGHNSCIY----QAAFSPHIP--NLFASASGDGTLRLWDVRSPGKFM---------------SIEAHNSEI 193 (311)
T ss_pred CCCcceEeecCCccEEE----EEecCCCCC--CeEEEccCCceEEEEEecCCCcee---------------EEEecccee
Confidence 7633 677777765554 368998755 3588999999999999986 4421 133455555
Q ss_pred eEEEEc---CCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC---CEEEEEeCCCccccCcceEEEEEcC
Q 046773 298 GRVRVT---SHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA---EAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 298 ~~v~~s---~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g---~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
.+.-++ +.-++.++.|+.||.||+++-+..+-+ ..+|+..|..+.+++ +.|+++|.|- |+|||+..
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e-L~gh~~AVRkvk~Sph~~~lLaSasYDm-------T~riw~~~ 265 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE-LNGHGLAVRKVKFSPHHASLLASASYDM-------TVRIWDPE 265 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhcccccee-ecCCceEEEEEecCcchhhHhhhccccc-------eEEecccc
Confidence 555443 333455567899999999986544332 244566777776665 4689999999 99999987
Q ss_pred CC-eeEEEEEecCCCeeEEEEee-CCCeEEEEeC-CeEEEEEC
Q 046773 372 TF-EEVCRFSLRADRNVNVMGCM-NQGYALMCVE-GVIRVWEV 411 (453)
Q Consensus 372 tg-~~v~~l~~~~~~v~~~~~~~-~~~~lls~s~-~tIrlWD~ 411 (453)
.+ .++.+...|..=+..+-+++ +++++++++- ..++||+.
T Consensus 266 ~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 266 RQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 44 23333344443344444444 4677777775 99999984
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-19 Score=178.57 Aligned_cols=227 Identities=15% Similarity=0.168 Sum_probs=170.8
Q ss_pred EEEEEe--cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE---cCCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTL--SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII---TDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~laf--s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f---~g~~LasgS~D~tIkvWd~~~ 221 (453)
|+++.| +|++||.|..-|-|||+|+.+..-+|+|.+|.. .|.-+.| ++..+++||.|+.+|+||+++
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a--------pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQA--------PVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccC--------ceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 667777 488999999999999999988888999999865 3444555 356799999999999999987
Q ss_pred CC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc--EEecccccCCcceeeeeeeeeeccce
Q 046773 222 VA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 222 ~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
+ +..+.+|++.|. ..+++|-..- +++|||.|++||+||+++.. .+ --.|-.||
T Consensus 143 -a~v~~~l~~htDYVR----~g~~~~~~~h--ivvtGsYDg~vrl~DtR~~~~~v~----------------elnhg~pV 199 (487)
T KOG0310|consen 143 -AYVQAELSGHTDYVR----CGDISPANDH--IVVTGSYDGKVRLWDTRSLTSRVV----------------ELNHGCPV 199 (487)
T ss_pred -cEEEEEecCCcceeE----eeccccCCCe--EEEecCCCceEEEEEeccCCceeE----------------EecCCCce
Confidence 4 335667877764 3567776443 48899999999999998863 21 12566789
Q ss_pred eEEEEcCCc-eEEEEcCCcEEEEECCCCceEEEEee-ccCCeEEEEE--EecCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 298 GRVRVTSHE-SAVACTSSRVITFDLRNQGMVLGERG-YGRGLYVTSV--DVNAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 298 ~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~~~~g-~~~~~~v~~~--~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
-.|.+-|.+ ++++++...||+||+.+|+.+.+... |.. .|+|+ .-++.+|++++-|+ .+||++..+.
T Consensus 200 e~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~K--tVTcL~l~s~~~rLlS~sLD~-------~VKVfd~t~~ 270 (487)
T KOG0310|consen 200 ESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNK--TVTCLRLASDSTRLLSGSLDR-------HVKVFDTTNY 270 (487)
T ss_pred eeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccc--eEEEEEeecCCceEeeccccc-------ceEEEEccce
Confidence 998887764 44445557899999999877666544 443 45565 45568999999999 9999998888
Q ss_pred eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 374 EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 374 ~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
+.+..+... ..|.++..++++..++.+-+ |.+-+=+....
T Consensus 271 Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 271 KVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred EEEEeeecc-cceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 888888764 45888888888888887765 66654454443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-18 Score=160.98 Aligned_cols=266 Identities=14% Similarity=0.115 Sum_probs=193.2
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEe--cCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTF--RPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl--~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~ 219 (453)
|.+++++ +.+||+||.|+|+++|+++-.+.+..+ +||+. .|.-++.+ ++.++++|.|++|++||+
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~--------svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD--------SVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCc--------chhhheeCCCCCcceEEecCCceEEEEEe
Confidence 6678875 689999999999999999988655443 45543 34445554 678999999999999999
Q ss_pred ecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 220 DDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 220 ~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
.. +..+.+... ..+...+..+|+|.+ ++.|+.|..|-.-|+++-+...- ......++-
T Consensus 95 r~-~k~~~~i~~---~~eni~i~wsp~g~~---~~~~~kdD~it~id~r~~~~~~~---------------~~~~~e~ne 152 (313)
T KOG1407|consen 95 RS-GKCTARIET---KGENINITWSPDGEY---IAVGNKDDRITFIDARTYKIVNE---------------EQFKFEVNE 152 (313)
T ss_pred cc-CcEEEEeec---cCcceEEEEcCCCCE---EEEecCcccEEEEEecccceeeh---------------hcccceeee
Confidence 87 423332221 112235899999997 67889999999999988763210 011234555
Q ss_pred EEEc-CCce-EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEE
Q 046773 300 VRVT-SHES-AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC 377 (453)
Q Consensus 300 v~~s-~~~~-~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~ 377 (453)
+.++ ++.+ ++..+-++|.|-.-..-+-+..+..|.....+..|+|+|+++++||+|. .+.+||++.--|++
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA-------lvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA-------LVSLWDVDELICER 225 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc-------eeeccChhHhhhhe
Confidence 5554 2334 4445558888765554333334466776777777899999999999999 99999999877888
Q ss_pred EEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-e---C------C
Q 046773 378 RFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-C---G------T 444 (453)
Q Consensus 378 ~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~---D------~ 444 (453)
.++-.+-.||.+.|+-++++|+++|. ..|-|=+++||..+..++ +.+. .. +..|....||=+ . + +
T Consensus 226 ~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~-t~tVAWHPk~~LLAyA~ddk~~d~~reag 303 (313)
T KOG1407|consen 226 CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGP-TFTVAWHPKRPLLAYACDDKDGDSNREAG 303 (313)
T ss_pred eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCC-ceeEEecCCCceeeEEecCCCCccccccc
Confidence 88776666999999999999998887 999999999999888775 3344 33 667888888744 2 2 5
Q ss_pred cEEEEec
Q 046773 445 NIHLWDF 451 (453)
Q Consensus 445 ~IklWDl 451 (453)
+|||+-+
T Consensus 304 ~vKiFG~ 310 (313)
T KOG1407|consen 304 TVKIFGL 310 (313)
T ss_pred eeEEecC
Confidence 8888754
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-19 Score=176.11 Aligned_cols=236 Identities=13% Similarity=0.098 Sum_probs=171.9
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEE--EEcCCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGI--IITDSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i--~f~g~~LasgS~D~ 212 (453)
.||.+| |..+.||| ++|++++.|..+++||+.||++++.+...++ + ++.+. .+||..+++||.|+
T Consensus 266 vgh~~~----V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~--~-----S~~sc~W~pDg~~~V~Gs~dr 334 (519)
T KOG0293|consen 266 VGHSQP----VSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLG--F-----SVSSCAWCPDGFRFVTGSPDR 334 (519)
T ss_pred ecccCc----eEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcC--C-----CcceeEEccCCceeEecCCCC
Confidence 389976 77889987 5999999999999999999999988753221 1 33444 46888999999999
Q ss_pred CEEEEEeecCCcceEEeee-cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 213 DIHVAVIDDVANETRTAHF-GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~-~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
+|..||.+..-...-++.. ..| .-++.++||++ +++-..|+.|++.+.++..... +.
T Consensus 335 ~i~~wdlDgn~~~~W~gvr~~~v----~dlait~Dgk~---vl~v~~d~~i~l~~~e~~~dr~---------------li 392 (519)
T KOG0293|consen 335 TIIMWDLDGNILGNWEGVRDPKV----HDLAITYDGKY---VLLVTVDKKIRLYNREARVDRG---------------LI 392 (519)
T ss_pred cEEEecCCcchhhccccccccee----EEEEEcCCCcE---EEEEecccceeeechhhhhhhc---------------cc
Confidence 9999998861111111100 011 13788999998 3444589999999998865210 11
Q ss_pred eeccceeEEEEcCCce-EEEE-cCCcEEEEECCCCceEEEEeeccCCeEE--EEEEecC-CEEEEEeCCCccccCcceEE
Q 046773 292 EFTEFVGRVRVTSHES-AVAC-TSSRVITFDLRNQGMVLGERGYGRGLYV--TSVDVNA-EAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~-~vas-~d~tIrlWDl~t~~~~~~~~g~~~~~~v--~~~~~~g-~~l~s~s~dg~~~~~~~~i~ 366 (453)
.-..++.+.++|.++. ++.. .+..|+|||++....+....||.++.++ .||.--. ..++|||.|+ .|.
T Consensus 393 se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~-------kvy 465 (519)
T KOG0293|consen 393 SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS-------KVY 465 (519)
T ss_pred cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCc-------eEE
Confidence 1225788889987764 4444 4679999999976555555788776665 3454322 5678888888 999
Q ss_pred EEEcCCCeeEEEEEecCCCeeEEEEeeC-CCeEEEEeC-CeEEEEECC
Q 046773 367 VRRVDTFEEVCRFSLRADRNVNVMGCMN-QGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 367 Iw~~~tg~~v~~l~~~~~~v~~~~~~~~-~~~lls~s~-~tIrlWD~~ 412 (453)
||+-.+|..+.++++|...|..++..|. ...++++++ ||||||-..
T Consensus 466 IWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 466 IWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred EEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9999999999999999988989998885 455566677 999999765
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-18 Score=164.02 Aligned_cols=269 Identities=12% Similarity=0.158 Sum_probs=173.5
Q ss_pred CCCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCe-----EEEE-ecCCCCCccccccceEEEEEEcCC---eE
Q 046773 137 SDVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRL-----HVRT-FRPQHSDRLGQFSRAVSGIIITDS---QL 205 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~-----~~~t-l~gh~~~~~~~~s~~V~~i~f~g~---~L 205 (453)
+||. +. |+|++|+ |++|||.+.|++|||||+...+ |+|. +...| -..+.|.++ .+
T Consensus 83 KgH~--~~--vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh----------pT~V~FapDc~s~v 148 (420)
T KOG2096|consen 83 KGHK--KE--VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH----------PTRVVFAPDCKSVV 148 (420)
T ss_pred hccC--Cc--eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC----------ceEEEECCCcceEE
Confidence 5998 45 7888886 6899999999999999998753 3322 21111 123455433 45
Q ss_pred EEEeCCCCEEEEEeec--CC--cceE---------EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE
Q 046773 206 IFATLDGDIHVAVIDD--VA--NETR---------TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV 272 (453)
Q Consensus 206 asgS~D~tIkvWd~~~--~g--~~~~---------~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~ 272 (453)
++.-...+++|+-... .| .++. +.|...+. .+.....+++ |+|+|.|.+|.|||++ |+.
T Consensus 149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i----~iGiA~~~k~---imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDII----NIGIAGNAKY---IMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceE----EEeecCCceE---EEEecCCCcEEEEecC-Cce
Confidence 6666667788876532 12 1111 11221221 1344455665 8899999999999998 775
Q ss_pred EecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCC--cEEEEECC---CCc-----eEEEEeeccCCeEEEEE
Q 046773 273 FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSS--RVITFDLR---NQG-----MVLGERGYGRGLYVTSV 342 (453)
Q Consensus 273 ~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~--tIrlWDl~---t~~-----~~~~~~g~~~~~~v~~~ 342 (453)
+.- -+. +++.. ...++||++.++++... .|++|.+- .|. ....+.||...+...+|
T Consensus 221 L~~---idt------nq~~n-----~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF 286 (420)
T KOG2096|consen 221 LQS---IDT------NQSSN-----YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF 286 (420)
T ss_pred eee---ecc------ccccc-----cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee
Confidence 420 000 11111 22467999988887654 59999973 221 12234677666555667
Q ss_pred EecCCEEEEEeCCCccccCcceEEEEEcCCC----e---eEEEE--Eec--CCCeeEEEEeeCCCeEEEEeCCeEEEEEC
Q 046773 343 DVNAEAYIVVENRELENQNRRLAIVRRVDTF----E---EVCRF--SLR--ADRNVNVMGCMNQGYALMCVEGVIRVWEV 411 (453)
Q Consensus 343 ~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg----~---~v~~l--~~~--~~~v~~~~~~~~~~~lls~s~~tIrlWD~ 411 (453)
+++.++.+++|.|| ++||||.+-. + .+.+. .++ ......+..||++..++.+.+.++++...
T Consensus 287 sn~S~r~vtvSkDG-------~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~s 359 (420)
T KOG2096|consen 287 SNSSTRAVTVSKDG-------KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFAS 359 (420)
T ss_pred CCCcceeEEEecCC-------cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEc
Confidence 77788999999999 9999998732 1 11111 111 12233677788888777666699999999
Q ss_pred CCCeEEEEecc-cCCceEE--EEecCCCEEEEEeCCcEEEE
Q 046773 412 EGGEYMYSFRE-RIGEEVI--AFVGDDRHVAASCGTNIHLW 449 (453)
Q Consensus 412 ~tG~~l~tL~g-h~~~~V~--a~s~d~~~lasg~D~~IklW 449 (453)
++|+-+-+|+. |.+. |. ++++||++|++.-|.-++|.
T Consensus 360 e~g~~~~~~e~~h~~~-Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 360 EDGKDYPELEDIHSTT-ISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred ccCccchhHHHhhcCc-eeeEEecCCCcEEeeecceeeeee
Confidence 99988777754 6555 76 66799999998777777764
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-20 Score=194.67 Aligned_cols=245 Identities=16% Similarity=0.148 Sum_probs=192.0
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE--EcCCeEEEEeCCCCEEEEEeecCC-cceEEeeec
Q 046773 156 YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII--ITDSQLIFATLDGDIHVAVIDDVA-NETRTAHFG 232 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~--f~g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~ 232 (453)
++++...+-.+|+||....-|... .|.++. -+++.+++|+.|..+-+|.+..+- +..+.+|..
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~~~hsa--------------av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes 71 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREFVAHSA--------------AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES 71 (825)
T ss_pred ccceeeeeeccccccchhhhhhhh--------------hhceeeeeccceeeccCCCceeeccccccCCchhheeeccCC
Confidence 455666677788998754433222 233332 246678999999988899886643 555788877
Q ss_pred ceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEE--E
Q 046773 233 SVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV--A 310 (453)
Q Consensus 233 ~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v--a 310 (453)
.|. .|.|+++-.. |+.|+.|+|||+||++.+..+ ++|+||...+.+|.|+|=+-+. +
T Consensus 72 pIe----Sl~f~~~E~L---laagsasgtiK~wDleeAk~v--------------rtLtgh~~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 72 PIE----SLTFDTSERL---LAAGSASGTIKVWDLEEAKIV--------------RTLTGHLLNITSVDFHPYGEFFASG 130 (825)
T ss_pred cce----eeecCcchhh---hcccccCCceeeeehhhhhhh--------------hhhhccccCcceeeeccceEEeccc
Confidence 664 5899998765 889999999999999988754 5788999999999999876555 4
Q ss_pred EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEE
Q 046773 311 CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVM 390 (453)
Q Consensus 311 s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~ 390 (453)
|.|..+++||++-.+|.++..+|...+.+..|+|+|..++++..|. +++|||...|+.+.+|..|...++++-
T Consensus 131 Stdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~-------tvki~d~~agk~~~ef~~~e~~v~sle 203 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN-------TVKIWDLTAGKLSKEFKSHEGKVQSLE 203 (825)
T ss_pred cccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc-------eeeeecccccccccccccccccccccc
Confidence 5678899999998899999888888888888999999998888777 999999999998888888887788888
Q ss_pred EeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eC
Q 046773 391 GCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CG 443 (453)
Q Consensus 391 ~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D 443 (453)
|+|..-.+..++. +|||+||++|-+.+.....-... |. +|.||++.+.+| ++
T Consensus 204 ~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~-v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 204 FHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDG-VRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cCchhhhhccCCCCceeeeeccceeEEeeccCCccCC-ceeeeecCCceeeecCchh
Confidence 7776444444555 99999999998888777655666 66 688999999988 44
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-19 Score=169.83 Aligned_cols=203 Identities=12% Similarity=0.151 Sum_probs=149.3
Q ss_pred EEEEE--EcCCeEEEEeCCCCEEEEEeec-----------CC--------cceEEeeecceecCceEEEEeCCCceeeEE
Q 046773 195 VSGII--ITDSQLIFATLDGDIHVAVIDD-----------VA--------NETRTAHFGSVMDDGVLIDFTGCSRYWVGL 253 (453)
Q Consensus 195 V~~i~--f~g~~LasgS~D~tIkvWd~~~-----------~g--------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~L 253 (453)
+++-+ .||..+|+||.|..|||-|++. .| |+++--|...|. .+.|+|.... |
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn----~l~FHPre~I---L 187 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVN----DLDFHPRETI---L 187 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccc----ceeecchhhe---E
Confidence 44444 4688999999999999999972 11 233334555543 4899999885 9
Q ss_pred EEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceE-EEEcC-CcEEEEECCCCceEEEE-
Q 046773 254 YAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESA-VACTS-SRVITFDLRNQGMVLGE- 330 (453)
Q Consensus 254 aSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~-vas~d-~tIrlWDl~t~~~~~~~- 330 (453)
+|||.|+|||++|+..-..-+. .+.+ .-+.+|.++.|+|.+.+ +++.| .++||+|+.|-+|-...
T Consensus 188 iS~srD~tvKlFDfsK~saKrA-----------~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRA-----------FKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred EeccCCCeEEEEecccHHHHHH-----------HHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence 9999999999999965321000 0111 22468999999987743 34555 78999999999886553
Q ss_pred eeccCCeEEEE--EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-ecC-CCeeEEEEeeCCCeEEEEeC-Ce
Q 046773 331 RGYGRGLYVTS--VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-LRA-DRNVNVMGCMNQGYALMCVE-GV 405 (453)
Q Consensus 331 ~g~~~~~~v~~--~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-~~~-~~v~~~~~~~~~~~lls~s~-~t 405 (453)
...+|...|++ ++..++.++++|.|| .|||||--.+.|+.++. .|+ ..|.++.|..+++|+++++- .+
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG-------~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDG-------AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCC-------cEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence 22233344555 567788999999999 99999988888988773 232 34888899999999997765 99
Q ss_pred EEEEECCCCeEEEEeccc
Q 046773 406 IRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 406 IrlWD~~tG~~l~tL~gh 423 (453)
||||.+.||+++.++.|-
T Consensus 329 vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGA 346 (430)
T ss_pred eeeeeecCCceEEEEecC
Confidence 999999999999988653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=165.76 Aligned_cols=269 Identities=12% Similarity=0.082 Sum_probs=196.9
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~tIkvWd~~~~ 222 (453)
+.++...+ +.+.||+.|+++-++|..+++.+.+|.||.. .|..+.|.+ +.++++|.|..|+||.+...
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k--------ki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTK--------KITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcce--------EEEEEEeccchhheeecCCcceEEeeccccc
Confidence 56666666 6899999999999999999999999999875 577777764 56889999999999997542
Q ss_pred C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 223 A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 223 g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
- ....+.|...|. -+..+|.|.+ |.++|.|++.-.-|+++|..+.-++ -....-.+.+.+
T Consensus 294 s~~~~~~~h~~~V~----~ls~h~tgeY---llsAs~d~~w~Fsd~~~g~~lt~vs------------~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVT----GLSLHPTGEY---LLSASNDGTWAFSDISSGSQLTVVS------------DETSDVEYTSAA 354 (506)
T ss_pred cCccccccccccce----eeeeccCCcE---EEEecCCceEEEEEccCCcEEEEEe------------eccccceeEEee
Confidence 1 344556766554 3678899997 7799999999999999998553111 000001256789
Q ss_pred EcCCceEEEE--cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 302 VTSHESAVAC--TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 302 ~s~~~~~vas--~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
|+||+++.+. .|+.||+||+.++...-.+.||+..+...+|+-+|-.+++++.|+ .|++||+..-+...++
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-------~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-------SVKLWDLRKLKNFKTI 427 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-------eEEEEEehhhccccee
Confidence 9999987763 578999999998765444566655444444444555678888888 8999999866656666
Q ss_pred EecCC-CeeEEEEeeCCCeEEEEeCCeEEEEECC----CCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 380 SLRAD-RNVNVMGCMNQGYALMCVEGVIRVWEVE----GGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 380 ~~~~~-~v~~~~~~~~~~~lls~s~~tIrlWD~~----tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
+.... .+.++.|.+.|.+++++ +.+|+|+-.. .-+|+..+..|.+. .+ .|.-..++++++ .|...+|.-+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~-st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGL-STGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehhhhcccc-cceeeecccceEEeeccchhheEEeec
Confidence 54432 37788888888888766 4455555444 45788888888866 55 455567788988 8998888754
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-16 Score=148.10 Aligned_cols=279 Identities=14% Similarity=0.128 Sum_probs=191.0
Q ss_pred CCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCcccc---------ccceEEEEEEc--CCeEEEEe
Q 046773 143 DGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQ---------FSRAVSGIIIT--DSQLIFAT 209 (453)
Q Consensus 143 d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~---------~s~~V~~i~f~--g~~LasgS 209 (453)
|+.-|.+++|-| .+.|.||..+|.||---..-..+| .+|......| +..++-+.+++ |..|++||
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r--~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLR--HAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcc--cccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 334489999976 688999999999986432111110 1111111111 11256667664 88999999
Q ss_pred CCCCEEEEEe--ecC---C-cceEEeeecceecCceEEEEeCC----CceeeEEEEee-CCCeEEEeeCCCCcEEecccc
Q 046773 210 LDGDIHVAVI--DDV---A-NETRTAHFGSVMDDGVLIDFTGC----SRYWVGLYAGL-AGRAFHIWDRQAEEVFVGGDL 278 (453)
Q Consensus 210 ~D~tIkvWd~--~~~---g-~~~~~~~~~~v~~~~~~v~Fs~d----g~~~~~LaSgS-~D~tIrvWD~~tg~~~~g~~l 278 (453)
.|++||+--. ++. | .-.+..|.+.+. -++|-.+ |. .|+|++ .|..|-+=|..+|+-|
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtir----dl~fld~~~s~~~---il~s~gagdc~iy~tdc~~g~~~----- 176 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIR----DLAFLDDPESGGA---ILASAGAGDCKIYITDCGRGQGF----- 176 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCcee----eeEEecCCCcCce---EEEecCCCcceEEEeecCCCCcc-----
Confidence 9999999644 331 1 111223433332 2566433 33 377765 5888889898888743
Q ss_pred cCCcceeeeeeeeeeccceeEEE-EcCCceEEEEcCCcEEEEECCCCceEEEE--eeccC-----CeEEEEEEecCCEEE
Q 046773 279 TDHNTVMGWRMLTEFTEFVGRVR-VTSHESAVACTSSRVITFDLRNQGMVLGE--RGYGR-----GLYVTSVDVNAEAYI 350 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~~v~~v~-~s~~~~~vas~d~tIrlWDl~t~~~~~~~--~g~~~-----~~~v~~~~~~g~~l~ 350 (453)
|.+.+|++.+.++. .++--.+++|-|.|||.|||+-..|+.++ ..|.. .+...+++|+|..++
T Consensus 177 ---------~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 177 ---------HALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred ---------eeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 45678888887764 33433445566789999999998888774 22322 334456788899999
Q ss_pred EEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeE-----EEEecccC
Q 046773 351 VVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEY-----MYSFRERI 424 (453)
Q Consensus 351 s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~-----l~tL~gh~ 424 (453)
++-.|. ...++|+.-+..++.+-.|...++.+.|+|...|+++|+- ..|||=|+.. .. +.....|.
T Consensus 248 sg~~ds-------sc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~vv~ehk 319 (350)
T KOG0641|consen 248 SGHADS-------SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMVVAEHK 319 (350)
T ss_pred eccCCC-------ceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEEEEecc
Confidence 888888 9999999999999998888888999999999999999987 9999999973 22 23344687
Q ss_pred CceEE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 425 GEEVI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 425 ~~~V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+..|. .+.|.+.-.+|+ .|+++.||-+.
T Consensus 320 dk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CceEEEEecCccceeeeccCcceEEEeccC
Confidence 77454 567877766666 99999999763
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=179.79 Aligned_cols=280 Identities=11% Similarity=0.105 Sum_probs=192.7
Q ss_pred CCCCCCCeEEEEEEec--CCEEEEEe--CCCcEEEEECCCC------------eEEEEecCCCCCccccccceEEEEEE-
Q 046773 138 DVDNPDGLTCRCLTLS--DLYLACGF--ADGAVRLFDLTTR------------LHVRTFRPQHSDRLGQFSRAVSGIII- 200 (453)
Q Consensus 138 gh~~~d~v~v~~lafs--~~~LaSGS--~D~TIrlWD~~tg------------~~~~tl~gh~~~~~~~~s~~V~~i~f- 200 (453)
+|.+ +. |.++..+ +..+|||+ .|++++||+.+.- +.+-++.-|. .+|.++-|
T Consensus 10 ~H~~-~~--IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~--------~sv~CVR~S 78 (942)
T KOG0973|consen 10 NHNE-KS--IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD--------GSVNCVRFS 78 (942)
T ss_pred ccCC-ee--EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc--------CceeEEEEC
Confidence 5752 33 4555554 56999999 9999999996432 2233333332 36777765
Q ss_pred -cCCeEEEEeCCCCEEEEEeec------CC-------------cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCC
Q 046773 201 -TDSQLIFATLDGDIHVAVIDD------VA-------------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGR 260 (453)
Q Consensus 201 -~g~~LasgS~D~tIkvWd~~~------~g-------------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~ 260 (453)
||+.||+||.|+-|-||.... .| ..++++|.+.|. -|..+|++.+ |||+|.|+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~----Dv~Wsp~~~~---lvS~s~Dn 151 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL----DVNWSPDDSL---LVSVSLDN 151 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc----eeccCCCccE---EEEecccc
Confidence 588999999999999999772 11 134666776664 3899999997 89999999
Q ss_pred eEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCceEEEEeeccCC--
Q 046773 261 AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQGMVLGERGYGRG-- 336 (453)
Q Consensus 261 tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~~~~~~g~~~~-- 336 (453)
+|-|||..|.+++ ..+++|.+.|..|.|+|-+.+.| ++|.+||+|++.+-++.+...++-..
T Consensus 152 sViiwn~~tF~~~--------------~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 152 SVIIWNAKTFELL--------------KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred eEEEEccccceee--------------eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999998643 45789999999999999886665 57789999997765565554222111
Q ss_pred ----eEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeC--------C-------Ce
Q 046773 337 ----LYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMN--------Q-------GY 397 (453)
Q Consensus 337 ----~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~--------~-------~~ 397 (453)
.+=.+.+|+|..|+++-+=. ..-.++.|-+-++-..-..|.+|...+.-+.|.|- | -|
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n---~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y 294 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVN---GGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY 294 (942)
T ss_pred CcceeeecccCCCcCeecchhhcc---CCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence 12245678899888763321 11237777665555555667777766777777651 1 12
Q ss_pred -EEEEeC--CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEE-EEEeCCcEEEEecC
Q 046773 398 -ALMCVE--GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHV-AASCGTNIHLWDFG 452 (453)
Q Consensus 398 -lls~s~--~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~l-asg~D~~IklWDl~ 452 (453)
++++++ ++|-||....-+.+.....=.+..|. +.+|||..| |++.||+|.+..|+
T Consensus 295 ~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 295 CIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred EEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 445444 99999999887776543221222255 667999866 55599999998774
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=167.06 Aligned_cols=246 Identities=16% Similarity=0.195 Sum_probs=174.0
Q ss_pred CCCCCCCeEEEEEEecCC--EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEE
Q 046773 138 DVDNPDGLTCRCLTLSDL--YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIH 215 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~~--~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIk 215 (453)
.|.-+ |.|++++++ ++.|+|-|++|-=|++.||+..+-+..-. + | +
T Consensus 140 ~H~~s----~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-e--------v---------~---------- 187 (479)
T KOG0299|consen 140 KHQLS----VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-E--------V---------L---------- 187 (479)
T ss_pred cccCc----ceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-h--------h---------h----------
Confidence 56644 789999874 99999999999999999998653222100 0 0 0
Q ss_pred EEEeecCC--cceE-EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 216 VAVIDDVA--NETR-TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 216 vWd~~~~g--~~~~-~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
...+ ..+. +.|...+. .++.||||++ ||+|..|+-|.|||++|.+-. +++.+
T Consensus 188 ----k~~~~~~k~~r~~h~keil----~~avS~Dgky---latgg~d~~v~Iw~~~t~ehv--------------~~~~g 242 (479)
T KOG0299|consen 188 ----KSHGNPLKESRKGHVKEIL----TLAVSSDGKY---LATGGRDRHVQIWDCDTLEHV--------------KVFKG 242 (479)
T ss_pred ----hhccCCCCcccccccceeE----EEEEcCCCcE---EEecCCCceEEEecCcccchh--------------hcccc
Confidence 0001 1112 24544433 4899999998 889999999999999998832 34678
Q ss_pred eccceeEEEEc--CCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEec-CCEEEEEe-CCCccccCcceEEEE
Q 046773 293 FTEFVGRVRVT--SHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN-AEAYIVVE-NRELENQNRRLAIVR 368 (453)
Q Consensus 293 h~~~v~~v~~s--~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~-g~~l~s~s-~dg~~~~~~~~i~Iw 368 (453)
|.+.|.+++|. ++.++++|.|.+|++|+++....+.++ ++|+..|.+++.- -++.+++. .|. |+++|
T Consensus 243 hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl--yGHqd~v~~IdaL~reR~vtVGgrDr-------T~rlw 313 (479)
T KOG0299|consen 243 HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL--YGHQDGVLGIDALSRERCVTVGGRDR-------TVRLW 313 (479)
T ss_pred cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH--hCCccceeeechhcccceEEeccccc-------eeEEE
Confidence 99999999986 566899999999999999875443333 4556667777644 35566665 677 99999
Q ss_pred EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc-cC---C--------ceEEEE--ec
Q 046773 369 RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE-RI---G--------EEVIAF--VG 433 (453)
Q Consensus 369 ~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g-h~---~--------~~V~a~--s~ 433 (453)
.++.- ....+.++...+..+++- +...++++|+ |.|-||++..-+.|.+.+- |. . + |+++ .|
T Consensus 314 Ki~ee-sqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~W-itsla~i~ 390 (479)
T KOG0299|consen 314 KIPEE-SQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFW-ITSLAVIP 390 (479)
T ss_pred ecccc-ceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccc-eeeeEecc
Confidence 99432 122334444445555544 5677788998 9999999999888877642 21 1 3 6644 58
Q ss_pred CCCEEEEE-eCCcEEEEecC
Q 046773 434 DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 434 d~~~lasg-~D~~IklWDl~ 452 (453)
....+||| .+|.||||.+.
T Consensus 391 ~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 391 GSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred cCceEEecCCCCceEEEEec
Confidence 88899999 99999999764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-16 Score=151.62 Aligned_cols=238 Identities=13% Similarity=0.068 Sum_probs=157.9
Q ss_pred EEEEEecC--CEE-EEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEE-EEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYL-ACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLI-FATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~L-aSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~La-sgS~D~tIkvWd~~ 220 (453)
+.+++|++ ++| ++++.|++|++||+.+++.++++..+.. +..+++ +++.++ +++.|++|++||+.
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~g~~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---------PELFALHPNGKILYIANEDDNLVTVIDIE 103 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC---------ccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 35678875 454 7888999999999999999888764332 223444 466664 45678999999997
Q ss_pred cCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCC-CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 221 DVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG-RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 221 ~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D-~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
+ + ..+....... ....++|+|||++ |++++.+ ..+.+||.++++... .+. ......+
T Consensus 104 ~-~-~~~~~~~~~~--~~~~~~~~~dg~~---l~~~~~~~~~~~~~d~~~~~~~~--------------~~~-~~~~~~~ 161 (300)
T TIGR03866 104 T-R-KVLAEIPVGV--EPEGMAVSPDGKI---VVNTSETTNMAHFIDTKTYEIVD--------------NVL-VDQRPRF 161 (300)
T ss_pred C-C-eEEeEeeCCC--CcceEEECCCCCE---EEEEecCCCeEEEEeCCCCeEEE--------------EEE-cCCCccE
Confidence 6 3 2221111110 1124799999997 5566655 467888998877431 010 1123456
Q ss_pred EEEcCCce-E-EEE-cCCcEEEEECCCCceEEEEeeccC-----C--eEEEEEEecCCEEEEE-eCCCccccCcceEEEE
Q 046773 300 VRVTSHES-A-VAC-TSSRVITFDLRNQGMVLGERGYGR-----G--LYVTSVDVNAEAYIVV-ENRELENQNRRLAIVR 368 (453)
Q Consensus 300 v~~s~~~~-~-vas-~d~tIrlWDl~t~~~~~~~~g~~~-----~--~~v~~~~~~g~~l~s~-s~dg~~~~~~~~i~Iw 368 (453)
+.|++++. + +++ .++.|++||+++++++.....+.. . ..-.+++++++.++++ ..+. .+.||
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~-------~i~v~ 234 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN-------RVAVV 234 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC-------eEEEE
Confidence 78887764 3 344 368899999999876654322211 0 1124567788875544 3344 79999
Q ss_pred EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEeccc
Q 046773 369 RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 369 ~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~gh 423 (453)
|..+++.+..+. ....+..+.++|++.++++++. ++|+|||+++++++.+++..
T Consensus 235 d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 235 DAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred ECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 999887765543 3445778899999999887643 99999999999999988643
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=158.51 Aligned_cols=223 Identities=15% Similarity=0.144 Sum_probs=159.8
Q ss_pred EEEcCCeEEEEeCCCCEEEEEeecCC----cceEEeeecceecCceEEEEeC--CCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 198 IIITDSQLIFATLDGDIHVAVIDDVA----NETRTAHFGSVMDDGVLIDFTG--CSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 198 i~f~g~~LasgS~D~tIkvWd~~~~g----~~~~~~~~~~v~~~~~~v~Fs~--dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
+.|.|.+|||+|.|++|||..+...+ +.++++|.|.+. .|+|.. -|. .|||+|.|+.|-||.-+.|+
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVw----qv~wahPk~G~---iLAScsYDgkVIiWke~~g~ 91 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVW----KVAWAHPKFGT---ILASCSYDGKVIIWKEENGR 91 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCee----EEeecccccCc---EeeEeecCceEEEEecCCCc
Confidence 34669999999999999999997644 467888988876 366643 355 49999999999999998886
Q ss_pred EEecccccCCcceeeeeeeeeeccceeEEEEcCCc----eEEEEcCCcEEEEECCCC-ceE-EEE-eeccCCeEEEEEEe
Q 046773 272 VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE----SAVACTSSRVITFDLRNQ-GMV-LGE-RGYGRGLYVTSVDV 344 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~----~~vas~d~tIrlWDl~t~-~~~-~~~-~g~~~~~~v~~~~~ 344 (453)
--. .+....|...||+|++.|.+ ++.+|+|++|.|-+.++. +-. ... ..|..++...+..|
T Consensus 92 w~k------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 92 WTK------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred hhh------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence 100 01234678899999999875 466788999999888764 211 111 23433332233333
Q ss_pred c---C-----------CEEEEEeCCCccccCcceEEEEEcCCCe--eEEEEEecCCCeeEEEEeeCC----CeEEEEeC-
Q 046773 345 N---A-----------EAYIVVENRELENQNRRLAIVRRVDTFE--EVCRFSLRADRNVNVMGCMNQ----GYALMCVE- 403 (453)
Q Consensus 345 ~---g-----------~~l~s~s~dg~~~~~~~~i~Iw~~~tg~--~v~~l~~~~~~v~~~~~~~~~----~~lls~s~- 403 (453)
. | .+++++..|. .++||..+.++ .-++|..|.++||.++.+|.- .++++|+-
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn-------~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDN-------LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred cCCCccccccCcccccceeeccCCcc-------ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 3 2 4588888888 99999988763 335588899999999999853 35667776
Q ss_pred CeEEEEECC--CC----eEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 404 GVIRVWEVE--GG----EYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 404 ~tIrlWD~~--tG----~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
++|-||-.. .+ +.|.+| .+. +| ++++.|.+|+.+ .|++|+||.
T Consensus 233 g~viIwt~~~e~e~wk~tll~~f---~~~-~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWKKTLLEEF---PDV-VWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred CcEEEEEecCccCcccccccccC---Ccc-eEEEEEeccccEEEEecCCcEEEEEE
Confidence 999999654 22 233333 344 77 678999999877 999999996
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-17 Score=155.54 Aligned_cols=229 Identities=12% Similarity=0.133 Sum_probs=162.4
Q ss_pred cceEEEEEEcC---CeEEEEeCCCCEEEEEeecCC-c--ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEe
Q 046773 192 SRAVSGIIITD---SQLIFATLDGDIHVAVIDDVA-N--ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIW 265 (453)
Q Consensus 192 s~~V~~i~f~g---~~LasgS~D~tIkvWd~~~~g-~--~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvW 265 (453)
..+|++|+|++ ..|+.+|.|+|||+|+++..| . .....|.+.+. .+.++.||.. +++|+.|+.+|+|
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL----~v~Wsddgsk---Vf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVL----DVCWSDDGSK---VFSGGCDKQAKLW 99 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeE----EEEEccCCce---EEeeccCCceEEE
Confidence 35788899986 356688999999999998744 1 22233445443 3899999975 7899999999999
Q ss_pred eCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce----EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEE
Q 046773 266 DRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES----AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTS 341 (453)
Q Consensus 266 D~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~----~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~ 341 (453)
|+.+++.. ++..|.++|..+++-+... +.+|.|.|||.||++....+.+.... ..|++
T Consensus 100 DL~S~Q~~---------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---eRvYa 161 (347)
T KOG0647|consen 100 DLASGQVS---------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP---ERVYA 161 (347)
T ss_pred EccCCCee---------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc---ceeee
Confidence 99999842 2346788999888765443 77788999999999987655554322 24677
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC--CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC--eE
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA--DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG--EY 416 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~--~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG--~~ 416 (453)
.+.-...++.+.++. .|.|+++..+........+| -.+|+++.+.+....+.++- |.+-|=.+..+ +-
T Consensus 162 ~Dv~~pm~vVata~r-------~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 162 ADVLYPMAVVATAER-------HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD 234 (347)
T ss_pred hhccCceeEEEecCC-------cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC
Confidence 777777888888888 99999997653222211222 12677776665444444554 88888888776 33
Q ss_pred EEEecccCC--------ceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 417 MYSFRERIG--------EEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 417 l~tL~gh~~--------~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
-.+|+-|.. +.|+ +|.|.-.+||++ +||++-.||-+
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 445555642 1355 677877889998 99999999954
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-17 Score=152.66 Aligned_cols=216 Identities=18% Similarity=0.118 Sum_probs=164.4
Q ss_pred eEEEEEE--cCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 194 AVSGIII--TDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
.+.-|.+ +|++|.|++.|.++-||-... | +-++.+|++.|. .++.+-+++. |.+||.|.|+||||+++
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW----~~Did~~s~~---liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVW----CCDIDWDSKH---LITGSADQTAKLWDVET 83 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEE----EEEecCCcce---eeeccccceeEEEEcCC
Confidence 3444666 599999999999999998754 4 778999999887 3677777775 88999999999999999
Q ss_pred CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEEEcC------CcEEEEECCC-------CceEEEEeeccC
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVACTS------SRVITFDLRN-------QGMVLGERGYGR 335 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~vas~d------~tIrlWDl~t-------~~~~~~~~g~~~ 335 (453)
|+++. .| ....+|..|-|+.++ +++++.| +.|-+.|++. ..+.+...-+..
T Consensus 84 Gk~la-----------~~----k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s 148 (327)
T KOG0643|consen 84 GKQLA-----------TW----KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS 148 (327)
T ss_pred CcEEE-----------Ee----ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc
Confidence 99542 02 123678889998654 6666665 4588999983 333444322233
Q ss_pred CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC
Q 046773 336 GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 336 ~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t 413 (453)
...+.-..+.++.++++-.+| .|.+||+.+| +.+..-..|...+..+.++++..+.++++- .|-||||+.+
T Consensus 149 kit~a~Wg~l~~~ii~Ghe~G-------~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 149 KITSALWGPLGETIIAGHEDG-------SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ceeeeeecccCCEEEEecCCC-------cEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 333444688899999999999 9999999998 445555777778889999999999998887 9999999999
Q ss_pred CeEEEEecccCCceEE--EEecCCCEEEEE
Q 046773 414 GEYMYSFRERIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 414 G~~l~tL~gh~~~~V~--a~s~d~~~lasg 441 (453)
-+++.|+. ++.+|+ +++|--..++.|
T Consensus 222 l~v~Kty~--te~PvN~aaisP~~d~Vilg 249 (327)
T KOG0643|consen 222 LEVLKTYT--TERPVNTAAISPLLDHVILG 249 (327)
T ss_pred eeeEEEee--ecccccceecccccceEEec
Confidence 99999985 455587 677866666544
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-17 Score=165.11 Aligned_cols=276 Identities=10% Similarity=0.087 Sum_probs=181.7
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCC----eEEEEecCCCCCccccccceEEEEEEc--CCeEEEEe
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTR----LHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFAT 209 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg----~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS 209 (453)
+|+ -+|.+|++++ .+++|||+|-+||+||...- +.-|.|.+-..+ .|++++++ +++|+..|
T Consensus 165 hgt----k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h-------~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 165 HGT----KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH-------QINSLQYSVTGDQILVVS 233 (641)
T ss_pred CCc----eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc-------ccceeeecCCCCeEEEEe
Confidence 666 3488999985 69999999999999997533 223334332211 46778776 66666566
Q ss_pred CCCCEEEEEeec-------CC---c---ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc----E
Q 046773 210 LDGDIHVAVIDD-------VA---N---ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE----V 272 (453)
Q Consensus 210 ~D~tIkvWd~~~-------~g---~---~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~----~ 272 (453)
-...+||.|-+. .| | ..-++|...+. ...|+|+.+- .+.++|.|+|+||||++.-+ .
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt----~g~whP~~k~--~FlT~s~DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELT----CGCWHPDNKE--EFLTCSYDGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeee----ccccccCccc--ceEEecCCCcEEEEecCCchhheeE
Confidence 666778887553 01 0 11224444332 2468888765 36689999999999998643 2
Q ss_pred EecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceE---EEEeeccC--CeEEEEEEec
Q 046773 273 FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMV---LGERGYGR--GLYVTSVDVN 345 (453)
Q Consensus 273 ~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~---~~~~g~~~--~~~v~~~~~~ 345 (453)
+.. ....+-.-++...+|++++. +.+|.|+.|.+||....... +.-..|.. .+.+.+|+++
T Consensus 308 ik~------------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d 375 (641)
T KOG0772|consen 308 IKT------------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD 375 (641)
T ss_pred Eee------------ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence 220 01112234566778888774 45588999999998654221 11134544 4555667888
Q ss_pred CCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCC--CeeEEEEeeCCCeEEEEeC-------CeEEEEECCCCe
Q 046773 346 AEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRAD--RNVNVMGCMNQGYALMCVE-------GVIRVWEVEGGE 415 (453)
Q Consensus 346 g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~--~v~~~~~~~~~~~lls~s~-------~tIrlWD~~tG~ 415 (453)
|+.|++=+.|. +.||||+... +++.+.+.-+. ......|+|+.+.++++.+ +++..+|..|-+
T Consensus 376 g~~LlSRg~D~-------tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 376 GNYLLSRGFDD-------TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cchhhhccCCC-------ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 88898888888 9999999875 45544433221 1345688999888887753 789999999999
Q ss_pred EEEEecccCCceEE-EEecCCCEEEEE-eCCcEEEE
Q 046773 416 YMYSFRERIGEEVI-AFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 416 ~l~tL~gh~~~~V~-a~s~d~~~lasg-~D~~IklW 449 (453)
.++++.-.+...|. .+.|-=+.|..| .||+++|+
T Consensus 449 ~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 449 TVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 99988655666233 445655556556 89999986
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-16 Score=143.80 Aligned_cols=240 Identities=11% Similarity=0.129 Sum_probs=158.0
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc------CCeEEEEeC-CCCEEEE
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT------DSQLIFATL-DGDIHVA 217 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~------g~~LasgS~-D~tIkvW 217 (453)
|+|.++| +.+|||||.|+|||+--.+.-.|- +.||.- .+..+...|+.++|- +.+|+|++. |-.|.+=
T Consensus 92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~--~~g~dl-e~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCN--ATGHDL-EFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred EEEEEecCccCeEEecCCCceEEEEeccccccc--ccCcce-eeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 5666666 589999999999998665544442 334432 222333478889882 457888765 4334443
Q ss_pred Eeec-CCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee-ecc
Q 046773 218 VIDD-VANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE-FTE 295 (453)
Q Consensus 218 d~~~-~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~-h~~ 295 (453)
|-.. .|.+.+.+|++++.. -++=+|- +++|||-|+|||.||++-..+... +. +.. |- .+ -++
T Consensus 169 dc~~g~~~~a~sghtghila-----lyswn~~---m~~sgsqdktirfwdlrv~~~v~~--l~--~~~---~~-~gless 232 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILA-----LYSWNGA---MFASGSQDKTIRFWDLRVNSCVNT--LD--NDF---HD-GGLESS 232 (350)
T ss_pred ecCCCCcceeecCCcccEEE-----EEEecCc---EEEccCCCceEEEEeeeccceeee--cc--Ccc---cC-CCcccc
Confidence 4333 137888899998741 1222222 588999999999999986553210 00 000 00 01 136
Q ss_pred ceeEEEEcCCceEEEEc--CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 296 FVGRVRVTSHESAVACT--SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 296 ~v~~v~~s~~~~~vas~--d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
.|.+|+++|.+.+++++ |....|+|++-++.+.+...|...+.+.-|+|....++++|.|. .||+-|+.-.
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~-------~ikltdlqgd 305 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM-------KIKLTDLQGD 305 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccc-------eEEEeecccc
Confidence 78899999988777764 67899999998887776655555555555666667889999999 8888887532
Q ss_pred ----eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 374 ----EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 374 ----~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
-++..+..|.+.+....++|+.-.+++++. +|+.||-+.
T Consensus 306 la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 306 LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 234455667777777778887666666655 999999653
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-19 Score=183.15 Aligned_cols=219 Identities=16% Similarity=0.193 Sum_probs=170.6
Q ss_pred eEEEEEEe--cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEee
Q 046773 145 LTCRCLTL--SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 145 v~v~~laf--s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~ 220 (453)
.+|.|+.. +.+.+++|+.|..+-||.+...-++..|.+|.. .|.+|-|+ ...|+.|+.|+||||||++
T Consensus 29 aav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes--------pIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 29 AAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES--------PIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCC--------cceeeecCcchhhhcccccCCceeeeehh
Confidence 34667764 457899999999999999999999999999765 47777776 4578999999999999998
Q ss_pred cCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC-CCcEEecccccCCcceeeeeeeeeeccce
Q 046773 221 DVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ-AEEVFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 221 ~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~-tg~~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
. + .+++.+|...+ ..|+|+|-|.+ .|+||.|..+++||++ .|.. ++..+|+.-|
T Consensus 101 e-Ak~vrtLtgh~~~~----~sv~f~P~~~~---~a~gStdtd~~iwD~Rk~Gc~---------------~~~~s~~~vv 157 (825)
T KOG0267|consen 101 E-AKIVRTLTGHLLNI----TSVDFHPYGEF---FASGSTDTDLKIWDIRKKGCS---------------HTYKSHTRVV 157 (825)
T ss_pred h-hhhhhhhhccccCc----ceeeeccceEE---eccccccccceehhhhccCce---------------eeecCCccee
Confidence 7 5 57788886543 36899999987 5899999999999998 4553 2344677788
Q ss_pred eEEEEcCCceEEEE--cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee
Q 046773 298 GRVRVTSHESAVAC--TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE 375 (453)
Q Consensus 298 ~~v~~s~~~~~vas--~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~ 375 (453)
+.++|+|++..+++ .|.+|+|||+..|+.+..+.+|...+....|+|..-.++++|.|. ++++||++|.+.
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~-------tv~f~dletfe~ 230 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR-------TVRFWDLETFEV 230 (825)
T ss_pred EEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc-------eeeeeccceeEE
Confidence 99999999966654 458999999999887666655544443334445445667788888 999999999887
Q ss_pred EEEEEecCCCeeEEEEeeCCCeEEEE
Q 046773 376 VCRFSLRADRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~~lls~ 401 (453)
+........+|+++.|.+++..++++
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecC
Confidence 77666556779999999887765433
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=159.43 Aligned_cols=234 Identities=15% Similarity=0.126 Sum_probs=162.4
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE--EcCCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII--ITDSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~--f~g~~LasgS~D~ 212 (453)
+||. .-|+.+.|++ +.++++|.|..||||.+....|....+.|.. .|.++. ++|++|+++|.|+
T Consensus 258 ~Gh~----kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~--------~V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 258 KGHT----KKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEE--------PVTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred cCcc----eEEEEEEeccchhheeecCCcceEEeeccccccCccccccccc--------cceeeeeccCCcEEEEecCCc
Confidence 4776 3388999987 5799999999999999999999888887765 466665 5689999999999
Q ss_pred CEEEEEeecCCcceEEeeeccee-cCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVM-DDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~-~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
+.-.-|+.+ | ..++.+...-. .+-...+|+|||-. +.+|+.|+.|||||+.++... -.+.
T Consensus 326 ~w~Fsd~~~-g-~~lt~vs~~~s~v~~ts~~fHpDgLi---fgtgt~d~~vkiwdlks~~~~--------------a~Fp 386 (506)
T KOG0289|consen 326 TWAFSDISS-G-SQLTVVSDETSDVEYTSAAFHPDGLI---FGTGTPDGVVKIWDLKSQTNV--------------AKFP 386 (506)
T ss_pred eEEEEEccC-C-cEEEEEeeccccceeEEeeEcCCceE---EeccCCCceEEEEEcCCcccc--------------ccCC
Confidence 998888887 5 55555544200 01124799999974 789999999999999988721 1245
Q ss_pred eeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEEeec-cCCeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 292 EFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGERGY-GRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~-~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
+|+++|..++|+.++. +++++|+.|++|||+.-+...+.... ...+...+|+.+|..+++++. +++|+
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~---------~l~Vy 457 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGS---------DLQVY 457 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecc---------eeEEE
Confidence 7899999999999885 55677888999999965433343111 112445667777888877744 44555
Q ss_pred EcC--C--CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEE
Q 046773 369 RVD--T--FEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWE 410 (453)
Q Consensus 369 ~~~--t--g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD 410 (453)
... + =.++..+..|......+.|.-...++++++- ..+||.-
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 433 2 2345555444433444555545555555553 5666543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-17 Score=152.48 Aligned_cols=225 Identities=13% Similarity=0.120 Sum_probs=162.8
Q ss_pred eEEEEEE--cCCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC
Q 046773 194 AVSGIII--TDSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268 (453)
Q Consensus 194 ~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~ 268 (453)
.|.+|++ +|.+|++||.|++++||+++... -...++|.+.|.+ +..+|... ..++++|.|++||+||++
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdq----l~w~~~~~--d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQ----LCWDPKHP--DLFATASGDKTIRIWDIR 95 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhh----heeCCCCC--cceEEecCCceEEEEEec
Confidence 5667877 58999999999999999998611 1335567665532 45554432 148899999999999999
Q ss_pred CCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-e-EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC
Q 046773 269 AEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-S-AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA 346 (453)
Q Consensus 269 tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~-~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g 346 (453)
++++..- ...-.+.+ -+..+|++ . +++.-|+.|-.-|.++.+....+..... ..=.++..++
T Consensus 96 ~~k~~~~--------------i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e-~ne~~w~~~n 159 (313)
T KOG1407|consen 96 SGKCTAR--------------IETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE-VNEISWNNSN 159 (313)
T ss_pred cCcEEEE--------------eeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-eeeeeecCCC
Confidence 9883210 00000112 24556655 3 4444568899999998765444321110 1113455778
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCC
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIG 425 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~ 425 (453)
+..+.-++-| ++.|-..+.-+++++++.|+..-..+.|+|+|+|+++++. ..+.|||+..=-|++.+.-+.-
T Consensus 160 d~Fflt~GlG-------~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw 232 (313)
T KOG1407|consen 160 DLFFLTNGLG-------CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW 232 (313)
T ss_pred CEEEEecCCc-------eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC
Confidence 8888888888 9999999888999999999987778889999999999887 9999999999999999887755
Q ss_pred ceEE--EEecCCCEEEEE-eCCcEEE
Q 046773 426 EEVI--AFVGDDRHVAAS-CGTNIHL 448 (453)
Q Consensus 426 ~~V~--a~s~d~~~lasg-~D~~Ikl 448 (453)
+ |. +|+-||++|||| +|.-|-|
T Consensus 233 p-VRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 233 P-VRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred c-eEEEEeccCcceeeccCccceEEe
Confidence 5 87 677899999999 9887754
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-17 Score=162.63 Aligned_cols=185 Identities=12% Similarity=0.202 Sum_probs=132.5
Q ss_pred EEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--e-EEEEcCCcEEEEECCCC--ce
Q 046773 252 GLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--S-AVACTSSRVITFDLRNQ--GM 326 (453)
Q Consensus 252 ~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~-~vas~d~tIrlWDl~t~--~~ 326 (453)
.|+|||.|++|++||+.....- + ....+ -..+.+|.+.|+-|+|++.. + .++++|+.+.|||++++ ++
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~-~-~~~~p-----~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKE-D-KVVDP-----KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred eEeeccCCCcEEEEeccccccC-C-ccccc-----eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence 3789999999999998764310 0 00011 12367899999999998633 3 44456789999999953 33
Q ss_pred EEEEeeccCCeEEEEEEecC-CEEEEEeCCCccccCcceEEEEEcCC-CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-
Q 046773 327 VLGERGYGRGLYVTSVDVNA-EAYIVVENRELENQNRRLAIVRRVDT-FEEVCRFSLRADRNVNVMGCMNQGYALMCVE- 403 (453)
Q Consensus 327 ~~~~~g~~~~~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~- 403 (453)
.+...+|...+.+.+|.|.+ ..||++|+|+ ++.+||+.. .+++.+|..|.+.|..+.++|.-..++++|+
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~-------tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~ 337 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFNEFILATGSADK-------TVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT 337 (422)
T ss_pred cccccccCCceeEEEeCCCCCceEEeccCCC-------cEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence 33345666555555555443 5688999999 999999875 4688999999999999999998777776555
Q ss_pred -CeEEEEECCC-C-------------eEEEEecccCCceEEEEe--cCCCE-EEEE-eCCcEEEEec
Q 046773 404 -GVIRVWEVEG-G-------------EYMYSFRERIGEEVIAFV--GDDRH-VAAS-CGTNIHLWDF 451 (453)
Q Consensus 404 -~tIrlWD~~t-G-------------~~l~tL~gh~~~~V~a~s--~d~~~-lasg-~D~~IklWDl 451 (453)
+.+.|||+.. | +.|.+=.||+.. |..|+ |...+ |+|. +|+.+.||+.
T Consensus 338 D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k-V~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 338 DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK-VSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCcEEEEeccccccccChhhhccCCcceeEEecCcccc-cccccCCCCCCeEEEEecCCceEEEeec
Confidence 9999999974 2 123444688888 88555 76665 5666 9999999985
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-17 Score=174.83 Aligned_cols=203 Identities=15% Similarity=0.198 Sum_probs=144.7
Q ss_pred CCCCCCCCCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCC
Q 046773 136 PSDVDNPDGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLD 211 (453)
Q Consensus 136 ~~gh~~~d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D 211 (453)
+.||+. . |..|.+|- .+|.|+|.|+|||||++.+-+||++|. |. ..|++|+|. ++..+|||.|
T Consensus 365 f~GHt~--D--ILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn--------dfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 365 FKGHTA--D--ILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HN--------DFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred hhccch--h--heecccccCCeeEeccccccEEeecCCCcceeeEEe-cC--------CeeEEEEecccCCCcEeecccc
Confidence 459994 4 78999996 699999999999999999999999996 43 379999995 6789999999
Q ss_pred CCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 212 GDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 212 ~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
+.||||++...- -....-...++ ..|.|.|||+. .+.|+.++..+++++..-+...-..+...+. +..+
T Consensus 432 ~KvRiWsI~d~~-Vv~W~Dl~~lI---TAvcy~PdGk~---avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~----Kk~~ 500 (712)
T KOG0283|consen 432 GKVRLWSISDKK-VVDWNDLRDLI---TAVCYSPDGKG---AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK----KKKQ 500 (712)
T ss_pred cceEEeecCcCe-eEeehhhhhhh---eeEEeccCCce---EEEEEeccEEEEEEccCCeEEEeeeEeeccC----cccc
Confidence 999999986511 00000011111 14899999997 5689999999999987655211000000000 0111
Q ss_pred eeccceeEEEEc---CCceEEEEcCCcEEEEECCCCceEEEEeeccC--CeEEEEEEecCCEEEEEeCCCccccCcceEE
Q 046773 292 EFTEFVGRVRVT---SHESAVACTSSRVITFDLRNQGMVLGERGYGR--GLYVTSVDVNAEAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 292 ~h~~~v~~v~~s---~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~--~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~ 366 (453)
++ .|..++|. ++.++|.|.|..|||.|+++...++.+.|... ...-.+|+.+|+.++++|.|. .+.
T Consensus 501 ~~--rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs-------~VY 571 (712)
T KOG0283|consen 501 GK--RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS-------WVY 571 (712)
T ss_pred Cc--eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc-------eEE
Confidence 22 67888886 34578889999999999987666655554321 112345888999999999888 999
Q ss_pred EEEcC
Q 046773 367 VRRVD 371 (453)
Q Consensus 367 Iw~~~ 371 (453)
||+.+
T Consensus 572 iW~~~ 576 (712)
T KOG0283|consen 572 IWKND 576 (712)
T ss_pred EEeCC
Confidence 99864
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=169.32 Aligned_cols=236 Identities=14% Similarity=0.160 Sum_probs=165.1
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECCCC-eEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcc
Q 046773 147 CRCLTLSDLYLACGFADGAVRLFDLTTR-LHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANE 225 (453)
Q Consensus 147 v~~lafs~~~LaSGS~D~TIrlWD~~tg-~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~ 225 (453)
-.|+..++++|.|++.|+-||+|+...- +...++.-+. ..|.+++-....+++||.++||+++.....-..
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--------~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--------ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC--------ceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 3455556789999999999999998777 6666665322 267888888889999999999999988661112
Q ss_pred eE-EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 226 TR-TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 226 ~~-~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
++ .-.+-. ...++|+.+|.+ +|.||.|-.|||-++.+...- ..+++|.++|.+|.|+|
T Consensus 90 ~iL~Rftlp----~r~~~v~g~g~~---iaagsdD~~vK~~~~~D~s~~--------------~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 90 TILARFTLP----IRDLAVSGSGKM---IAAGSDDTAVKLLNLDDSSQE--------------KVLRGHDAPVLQLSYDP 148 (933)
T ss_pred ceeeeeecc----ceEEEEecCCcE---EEeecCceeEEEEeccccchh--------------eeecccCCceeeeeEcC
Confidence 11 111111 124799999997 789999999999998875511 24778999999999999
Q ss_pred CceEEE--EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec
Q 046773 305 HESAVA--CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR 382 (453)
Q Consensus 305 ~~~~va--s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~ 382 (453)
.+.++| +.||.|++||++++.+.+++.+- .++.+ ....+.
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v---------~k~n~----------------------~~~s~i------- 190 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGV---------DKDNE----------------------FILSRI------- 190 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccC---------Ccccc----------------------ccccce-------
Confidence 886555 45799999999998776655321 11110 000001
Q ss_pred CCCeeEEEEeeCCCeEEEEe-CCeEEEEECCCCeEEEEeccc--CC-ceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 383 ADRNVNVMGCMNQGYALMCV-EGVIRVWEVEGGEYMYSFRER--IG-EEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 383 ~~~v~~~~~~~~~~~lls~s-~~tIrlWD~~tG~~l~tL~gh--~~-~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
...++++|+++.++... +++|++++..+.+.+.+|+.- .. ..+.+|+|.|++||++ -||.|.|||.+
T Consensus 191 ---~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 191 ---CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ---eeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 12345556666666544 489999999888888888652 22 2233788999999888 88999999875
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.5e-17 Score=167.99 Aligned_cols=270 Identities=16% Similarity=0.259 Sum_probs=187.7
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEecCC--CC-----------------Cccccc----------cceEEEEEE--cCCe
Q 046773 156 YLACGFADGAVRLFDLTTRLHVRTFRPQ--HS-----------------DRLGQF----------SRAVSGIII--TDSQ 204 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~~tl~gh--~~-----------------~~~~~~----------s~~V~~i~f--~g~~ 204 (453)
-++|.|.|+||||||++.+..-.+++-. .. ...+.+ ...+++|+. +|+.
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 3789999999999999874322222100 00 000001 013566654 5788
Q ss_pred EEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 205 LIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
||+|-.-+++||+++..-. ......|...|. .+.||.---....|||+|.|+-|+|+|+...-.+.
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil----cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~--------- 540 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEIL----CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV--------- 540 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeE----EEeecCchhhhHhhhhccCCceEEEEecccccchh---------
Confidence 9999999999999987522 233445655543 25554331111248999999999999996554321
Q ss_pred eeeeeeeeeeccceeEEEEcCCc---eEEEEc-CCcEEEEECCCC---ceEEEE----eeccCCeEEEEEEecCCEEEEE
Q 046773 284 VMGWRMLTEFTEFVGRVRVTSHE---SAVACT-SSRVITFDLRNQ---GMVLGE----RGYGRGLYVTSVDVNAEAYIVV 352 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s~~~---~~vas~-d~tIrlWDl~t~---~~~~~~----~g~~~~~~v~~~~~~g~~l~s~ 352 (453)
++|-+|++.|.+|+|...+ .+++|+ |..| +++.... +.+... .+++ ..+-.+++|+-..++++
T Consensus 541 ----qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~kt-TlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 541 ----QTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKT-TLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred ----hhhcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccc-eEEEeeeCCCcceEEEE
Confidence 5688999999999997443 466665 4443 3444321 122111 1222 34556677888888999
Q ss_pred eCCCccccCcceEEEEEcCCCeeEEEEEecCC---CeeEEEEeeCCCeEEE-EeCCeEEEEECCCCeEEEEecccCCceE
Q 046773 353 ENRELENQNRRLAIVRRVDTFEEVCRFSLRAD---RNVNVMGCMNQGYALM-CVEGVIRVWEVEGGEYMYSFRERIGEEV 428 (453)
Q Consensus 353 s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~---~v~~~~~~~~~~~lls-~s~~tIrlWD~~tG~~l~tL~gh~~~~V 428 (453)
..|. .|+|+++..|+.+..|++..+ ....+...|.+-|+++ |+++|+-+.|.-+|+|+.+..||.+. |
T Consensus 615 cQDr-------nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~-V 686 (1080)
T KOG1408|consen 615 CQDR-------NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA-V 686 (1080)
T ss_pred eccc-------ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh-e
Confidence 9888 999999999999999877542 2456677888899885 45599999999999999999999988 8
Q ss_pred E--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 429 I--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 429 ~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+ -|.+|=++|+|. .|+-|.||.+.
T Consensus 687 TG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeeeecccchhheeecCCceEEEEECc
Confidence 8 678999999998 99999999874
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-16 Score=158.26 Aligned_cols=262 Identities=12% Similarity=0.085 Sum_probs=183.0
Q ss_pred EEEEEeCCCc-EEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCC-EEEEEeecCC-cceEEeeec
Q 046773 156 YLACGFADGA-VRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGD-IHVAVIDDVA-NETRTAHFG 232 (453)
Q Consensus 156 ~LaSGS~D~T-IrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~t-IkvWd~~~~g-~~~~~~~~~ 232 (453)
.+.++|.|.. +.+||+.||..+.+++|-.. +.+++ .-+..+..++++...+- +.+|.+...- .+.+....|
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~--a~~~s----l~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg 82 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYL--AQAAS----LTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG 82 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCccc--ccchh----hhhhchhheeeecccCccccccccCchhhhhhhccccc
Confidence 4567788865 99999999999999986311 00000 01234567777766554 7899886521 121222222
Q ss_pred ceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEE
Q 046773 233 SVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVA 310 (453)
Q Consensus 233 ~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~va 310 (453)
.+ ..++-+|+|.+ |+.|..-+.|.||.+.||+++ ..+..|-..|.+++|+.++ ++++
T Consensus 83 ~v----~al~s~n~G~~---l~ag~i~g~lYlWelssG~LL--------------~v~~aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 83 PV----HALASSNLGYF---LLAGTISGNLYLWELSSGILL--------------NVLSAHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred ce----eeeecCCCceE---EEeecccCcEEEEEeccccHH--------------HHHHhhccceeEEEEeCCCcEEEec
Confidence 22 14788899987 666668889999999999954 2356888999999999776 4666
Q ss_pred EcCCcEEEEECCCC-----c-eEEEE-eeccCCeEEEEEEec----CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 311 CTSSRVITFDLRNQ-----G-MVLGE-RGYGRGLYVTSVDVN----AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 311 s~d~tIrlWDl~t~-----~-~~~~~-~g~~~~~~v~~~~~~----g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
|-|+.|.+|++.+- . -...+ ..+.|...|+.+... ..+++++|.|. ++|+||+..|..+.++
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~-------t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR-------TIKLWDLSLGVLLLTI 214 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc-------eEEEEEeccceeeEEE
Confidence 77899999987531 0 11111 334556667776433 34789999999 9999999999888777
Q ss_pred EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC----------------CeEEEEecccCC-ceEE--EEecCCCEEE
Q 046773 380 SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG----------------GEYMYSFRERIG-EEVI--AFVGDDRHVA 439 (453)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t----------------G~~l~tL~gh~~-~~V~--a~s~d~~~la 439 (453)
.+ |..+.+++..|-.+.+..++. |.|-+=++.. +..+..|.||.+ ..|. +++.||..|+
T Consensus 215 ~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 215 TF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 65 444677777777777666666 7776666532 345677889988 2377 6679999999
Q ss_pred EE-eCCcEEEEecC
Q 046773 440 AS-CGTNIHLWDFG 452 (453)
Q Consensus 440 sg-~D~~IklWDl~ 452 (453)
|| .||+|.|||+.
T Consensus 294 SGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIY 307 (476)
T ss_pred eeCCCCCEEEEecc
Confidence 99 99999999974
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.9e-17 Score=150.44 Aligned_cols=230 Identities=11% Similarity=0.063 Sum_probs=160.3
Q ss_pred EEEecCCEEEEEeCCCcEEEEECCCC---eEEEEecCCCCCccccccceEEEEEE----cCCeEEEEeCCCCEEEEEeec
Q 046773 149 CLTLSDLYLACGFADGAVRLFDLTTR---LHVRTFRPQHSDRLGQFSRAVSGIII----TDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 149 ~lafs~~~LaSGS~D~TIrlWD~~tg---~~~~tl~gh~~~~~~~~s~~V~~i~f----~g~~LasgS~D~tIkvWd~~~ 221 (453)
-+.|.+++|||+|.|+||||+.++.. +.+.+|+||.+ .|.-+++ -|.+|||+|.|+.|.||.-+.
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G--------PVwqv~wahPk~G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG--------PVWKVAWAHPKFGTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCC--------CeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence 35677999999999999999998765 46889999876 3454554 278999999999999999776
Q ss_pred CC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC-c-EEecccccCCcceeeeeeeeeecc
Q 046773 222 VA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE-E-VFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 222 ~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg-~-~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
| ...++.|...|. .|+|.|.+-- ..||.||.|++|+|.++++. . +-. .....|.-
T Consensus 90 -g~w~k~~e~~~h~~SVN----sV~wapheyg-l~LacasSDG~vsvl~~~~~g~w~t~-------------ki~~aH~~ 150 (299)
T KOG1332|consen 90 -GRWTKAYEHAAHSASVN----SVAWAPHEYG-LLLACASSDGKVSVLTYDSSGGWTTS-------------KIVFAHEI 150 (299)
T ss_pred -Cchhhhhhhhhhcccce----eecccccccc-eEEEEeeCCCcEEEEEEcCCCCccch-------------hhhhcccc
Confidence 4 344556666654 5899998544 35999999999999998764 2 100 12345666
Q ss_pred ceeEEEEcCC----------------ceEEEEcCCcEEEEECCCCceE--EEEeeccCCeEEEEEEec----CCEEEEEe
Q 046773 296 FVGRVRVTSH----------------ESAVACTSSRVITFDLRNQGMV--LGERGYGRGLYVTSVDVN----AEAYIVVE 353 (453)
Q Consensus 296 ~v~~v~~s~~----------------~~~vas~d~tIrlWDl~t~~~~--~~~~g~~~~~~v~~~~~~----g~~l~s~s 353 (453)
-|++|...|. .+++++.|..||||+..++.-. .++.+|..-+.-.+..|+ -..++++|
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 6777766543 2566677899999999886322 234566554333333343 24689999
Q ss_pred CCCccccCcceEEEEEcCCC-e--eEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 354 NRELENQNRRLAIVRRVDTF-E--EVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 354 ~dg~~~~~~~~i~Iw~~~tg-~--~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
.|+ ++-||..+.. + ....+.--++.+..+.+++.+..|+.+.+ +.|+||--.
T Consensus 231 qDg-------~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 231 QDG-------TVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CCC-------cEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 999 9999976521 1 11112223566778888888777765555 999999543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.5e-16 Score=147.15 Aligned_cols=272 Identities=15% Similarity=0.186 Sum_probs=166.0
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCe------------EEEEecCCCCCccccccceEEEEE---EcCCeEEEE
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRL------------HVRTFRPQHSDRLGQFSRAVSGII---ITDSQLIFA 208 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~------------~~~tl~gh~~~~~~~~s~~V~~i~---f~g~~Lasg 208 (453)
|.+|+.++ ++++||+.|+.|-|||++.-. |+ .-+.|.. .|.-+|..+. +|.-+..|+
T Consensus 46 vNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~-v~~~h~~----~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI-VAKQHEN----GHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee-ccccCCc----cceeeeeeeEEeeecCceeecc
Confidence 78999985 799999999999999997654 22 1112211 1222455554 355577889
Q ss_pred eCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee
Q 046773 209 TLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW 287 (453)
Q Consensus 209 S~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w 287 (453)
|.|.|+||||.++.- .-.+.. .+.|.. =+.||=....-.+|+|..|-.|||-|+++|..-
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~m-e~~VYs----hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-------------- 181 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKM-EGKVYS----HAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-------------- 181 (397)
T ss_pred cccceEEEeecccceeeEEeec-Cceeeh----hhcChhhhcceEEEEecCCCcEEEEeccCCcce--------------
Confidence 999999999998711 000110 011110 112221111114788999999999999999842
Q ss_pred eeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCC-ceEEEEeecc------------CCeEE--EEEEecCCEE
Q 046773 288 RMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQ-GMVLGERGYG------------RGLYV--TSVDVNAEAY 349 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~-~~~~~~~g~~------------~~~~v--~~~~~~g~~l 349 (453)
|+|.||++.|.+|..+|.. ++.+|.|++||+||++.. +|...+..|. |...| .+++-++..+
T Consensus 182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence 7789999999999999876 344567899999999875 6766542221 11122 3445556677
Q ss_pred EEEeCCCccccCcceEEEEEcCCCeeE-EEEE--ecCCC-eeEE-EEeeCCCeEEEE-eCCeEEEEECCCCeEEEEeccc
Q 046773 350 IVVENRELENQNRRLAIVRRVDTFEEV-CRFS--LRADR-NVNV-MGCMNQGYALMC-VEGVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~tg~~v-~~l~--~~~~~-v~~~-~~~~~~~~lls~-s~~tIrlWD~~tG~~l~tL~gh 423 (453)
++.+.|. -+++|+...|+.. ..+- .|... ...+ .-+.+.+-++.. .++++.|.++-+|..++.|.+|
T Consensus 262 ~~~gtd~-------r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 262 ASCGTDD-------RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred hhccCcc-------ceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence 7777777 8999998877421 1100 00000 0000 112232222222 2267777777778877777777
Q ss_pred CCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 424 IGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 424 ~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
-.. |. ++.||=+..-++ -|+.|..|-
T Consensus 335 ~k~-i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 335 LKR-INCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred cce-eeEEeecCchhhhhccccCCcccccc
Confidence 333 55 445665666677 788887774
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.5e-16 Score=163.19 Aligned_cols=288 Identities=16% Similarity=0.193 Sum_probs=190.4
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CC-eEEEEeCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DS-QLIFATLD 211 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~-~LasgS~D 211 (453)
.++. +. |+|+.-+| +.+|-|-.||+|.|.++..++.+.+|+ |. +| .|++++|. |. .||+|..-
T Consensus 199 ~~~~--s~--IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-~d---~g----~VtslSFrtDG~p~las~~~~ 266 (910)
T KOG1539|consen 199 QEFF--SR--ITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-QD---WG----RVTSLSFRTDGNPLLASGRSN 266 (910)
T ss_pred cccc--cc--eeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-cc---cc----ceeEEEeccCCCeeEEeccCC
Confidence 3565 33 89999998 789999999999999999999999998 32 12 68899995 54 68888888
Q ss_pred CCEEEEEeecCC-c-ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc----EE---ecccc----
Q 046773 212 GDIHVAVIDDVA-N-ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE----VF---VGGDL---- 278 (453)
Q Consensus 212 ~tIkvWd~~~~g-~-~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~----~~---~g~~l---- 278 (453)
|++-+||++..- + .++..|.+.+.. ..|-|.-. .|++.+.|+..|+|=..++. .+ .||+.
T Consensus 267 G~m~~wDLe~kkl~~v~~nah~~sv~~----~~fl~~ep---Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ 339 (910)
T KOG1539|consen 267 GDMAFWDLEKKKLINVTRNAHYGSVTG----ATFLPGEP---VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC 339 (910)
T ss_pred ceEEEEEcCCCeeeeeeeccccCCccc----ceecCCCc---eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchh
Confidence 999999998622 2 223345443321 23333322 25566666666666444321 00 01100
Q ss_pred --------------------------------------------------------c-----------------------
Q 046773 279 --------------------------------------------------------T----------------------- 279 (453)
Q Consensus 279 --------------------------------------------------------~----------------------- 279 (453)
+
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK 419 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEec
Confidence 0
Q ss_pred CCcceeeee----eeeee----c------cceeEEEEcC--CceEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEE
Q 046773 280 DHNTVMGWR----MLTEF----T------EFVGRVRVTS--HESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSV 342 (453)
Q Consensus 280 ~~~~v~~w~----~l~~h----~------~~v~~v~~s~--~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~ 342 (453)
+......|. ++-.| + ..+.+|++++ +-.+++++.++|-++|+++|-..... ....|...|..+
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl 499 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL 499 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEE
Confidence 000111121 11111 1 3445666664 44566677899999999998332223 123345566776
Q ss_pred EecC--CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEE
Q 046773 343 DVNA--EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYS 419 (453)
Q Consensus 343 ~~~g--~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~t 419 (453)
+.|+ ..+++++.+| .++.|+......+..+..... +..+..+-....++.+.+ -.|++.|+.|-+-.+.
T Consensus 500 a~D~~n~~~vsa~~~G-------ilkfw~f~~k~l~~~l~l~~~-~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 500 AVDGTNRLLVSAGADG-------ILKFWDFKKKVLKKSLRLGSS-ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred EecCCCceEEEccCcc-------eEEEEecCCcceeeeeccCCC-cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 6665 5589999999 999999998876666654332 223333333344444444 7899999999999999
Q ss_pred ecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 420 FRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 420 L~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|.||.+. |+ +|||||++|+++ .|++||+||+.
T Consensus 572 f~gh~nr-itd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 572 FWGHGNR-ITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred hhccccc-eeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 9999999 98 789999999999 99999999984
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-14 Score=142.87 Aligned_cols=274 Identities=17% Similarity=0.287 Sum_probs=197.6
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCe-EEEEecCCCCCccccccceEEEEEE---cCC-eEEEEeC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRL-HVRTFRPQHSDRLGQFSRAVSGIII---TDS-QLIFATL 210 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~-~~~tl~gh~~~~~~~~s~~V~~i~f---~g~-~LasgS~ 210 (453)
+|.+ . +.++.|+. ..+++++.|+.+++|+...+. .+..+.+++. ..+..+.+ ++. .++..+.
T Consensus 63 ~~~~--~--i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 131 (466)
T COG2319 63 GHED--S--ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-------SSVSKLALSSPDGNSILLASSS 131 (466)
T ss_pred eccc--e--EEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-------CceeeEEEECCCcceEEeccCC
Confidence 5663 3 67777764 688899999999999999998 7888876432 12333333 344 4454444
Q ss_pred -CCCEEEEEeec-CC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeC-CCeEEEeeCCCCcEEecccccCCcceee
Q 046773 211 -DGDIHVAVIDD-VA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLA-GRAFHIWDRQAEEVFVGGDLTDHNTVMG 286 (453)
Q Consensus 211 -D~tIkvWd~~~-~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~-D~tIrvWD~~tg~~~~g~~l~~~~~v~~ 286 (453)
|+++++|+... .. ...+..|...+. .++|+|+++. +++++. |+++++|++.++..+
T Consensus 132 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------------- 191 (466)
T COG2319 132 LDGTVKLWDLSTPGKLIRTLEGHSESVT----SLAFSPDGKL---LASGSSLDGTIKLWDLRTGKPL------------- 191 (466)
T ss_pred CCccEEEEEecCCCeEEEEEecCcccEE----EEEECCCCCE---EEecCCCCCceEEEEcCCCceE-------------
Confidence 99999999875 12 455555655543 4899999984 667775 999999999886532
Q ss_pred eeeeeeeccceeEEEEcCCce--EEE-EcCCcEEEEECCCCceEE-EEeeccCCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 287 WRMLTEFTEFVGRVRVTSHES--AVA-CTSSRVITFDLRNQGMVL-GERGYGRGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 287 w~~l~~h~~~v~~v~~s~~~~--~va-s~d~tIrlWDl~t~~~~~-~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
.++.+|...|.+++++|++. +++ +.|++|++||..++.++. ...+|.... +..|++++..+++++.++
T Consensus 192 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~------ 263 (466)
T COG2319 192 -STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDG------ 263 (466)
T ss_pred -EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCC------
Confidence 23556888999999998763 444 457899999999877766 456676655 568888887888888888
Q ss_pred ceEEEEEcCCCee-EEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEec--ccCCceEE--EEecCCC
Q 046773 363 RLAIVRRVDTFEE-VCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFR--ERIGEEVI--AFVGDDR 436 (453)
Q Consensus 363 ~~i~Iw~~~tg~~-v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~--gh~~~~V~--a~s~d~~ 436 (453)
.+++|+...... +..+..|...+..+.+.+++..+++++. +++++||+.+........ .|... |. ++.+++.
T Consensus 264 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 341 (466)
T COG2319 264 -TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP-VSSLSFSPDGS 341 (466)
T ss_pred -cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc-eEEEEECCCCC
Confidence 999999987654 4444455666888888887788777554 789999999998877776 78775 55 4423324
Q ss_pred EE-EEE-eCCcEEEEecC
Q 046773 437 HV-AAS-CGTNIHLWDFG 452 (453)
Q Consensus 437 ~l-asg-~D~~IklWDl~ 452 (453)
.+ +++ .|+.+++|++.
T Consensus 342 ~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 342 LLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred EEEEeecCCCcEEeeecC
Confidence 44 454 78999999874
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=165.85 Aligned_cols=249 Identities=14% Similarity=0.165 Sum_probs=162.2
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEE--ecCCCCCccccccceEEEEEEc---CCeEEEEeC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRT--FRPQHSDRLGQFSRAVSGIIIT---DSQLIFATL 210 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~t--l~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~ 210 (453)
-|.|. |..+..-+ ..|+|+|.|.|||+||+++++++.. +.||.. +|.+++|. ...+++|+.
T Consensus 98 aH~nA----ifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~--------SvkS~cf~~~n~~vF~tGgR 165 (720)
T KOG0321|consen 98 AHKNA----IFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG--------SVKSECFMPTNPAVFCTGGR 165 (720)
T ss_pred cccce----eEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc--------ccchhhhccCCCcceeeccC
Confidence 47654 56666654 5899999999999999999999888 888765 67777774 567899999
Q ss_pred CCCEEEEEeecCC--------cceEEee--------------------ecceecCceEEEEeCCCceeeEEEEeeC-CCe
Q 046773 211 DGDIHVAVIDDVA--------NETRTAH--------------------FGSVMDDGVLIDFTGCSRYWVGLYAGLA-GRA 261 (453)
Q Consensus 211 D~tIkvWd~~~~g--------~~~~~~~--------------------~~~v~~~~~~v~Fs~dg~~~~~LaSgS~-D~t 261 (453)
|+.|.|||....+ .+.+-.| ...+. ..+.|-|..|.. .|||+|. |++
T Consensus 166 Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~-ssvTvv~fkDe~---tlaSaga~D~~ 241 (720)
T KOG0321|consen 166 DGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF-SSVTVVLFKDES---TLASAGAADST 241 (720)
T ss_pred CCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee-eeeEEEEEeccc---eeeeccCCCcc
Confidence 9999999986411 0111111 11121 113344445544 3888887 999
Q ss_pred EEEeeCCCCc-EEecccccCCcceeeeeeeeee-ccceeE--EEEc--CCceEEEEcCCcEEEEECCCCceE-EEE-eec
Q 046773 262 FHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEF-TEFVGR--VRVT--SHESAVACTSSRVITFDLRNQGMV-LGE-RGY 333 (453)
Q Consensus 262 IrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h-~~~v~~--v~~s--~~~~~vas~d~tIrlWDl~t~~~~-~~~-~g~ 333 (453)
|||||+++.. .+.+.....+. +.-| .-.++. +.++ +..+++.|.|++|.+||+.+-..- ..+ .|+
T Consensus 242 iKVWDLRk~~~~~r~ep~~~~~-------~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQEPRGSDK-------YPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred eEEEeecccccccccCCCcccC-------ccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc
Confidence 9999999876 33332221111 1011 112222 3333 344677799999999999875321 111 222
Q ss_pred c-CCeEE-EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe-eEEEEEecCCCeeEEEEee-CCCeEEEEeC-CeEEE
Q 046773 334 G-RGLYV-TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE-EVCRFSLRADRNVNVMGCM-NQGYALMCVE-GVIRV 408 (453)
Q Consensus 334 ~-~~~~v-~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~-~v~~l~~~~~~v~~~~~~~-~~~~lls~s~-~tIrl 408 (453)
. ...++ .++++++..+++++.|. .+.||.+++.+ ....+.+|.-.|..+..++ +-.-+++|++ .+++|
T Consensus 315 ~~~sf~vks~lSpd~~~l~SgSsd~-------~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 315 LNSSFYVKSELSPDDCSLLSGSSDE-------QAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKI 387 (720)
T ss_pred ccceeeeeeecCCCCceEeccCCCc-------ceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEE
Confidence 1 11223 34689999999999999 88999998764 3334556665577777665 3456778887 99999
Q ss_pred EECCCCeE
Q 046773 409 WEVEGGEY 416 (453)
Q Consensus 409 WD~~tG~~ 416 (453)
|++..|-+
T Consensus 388 W~l~~~l~ 395 (720)
T KOG0321|consen 388 WRLSNGLE 395 (720)
T ss_pred EeccCchh
Confidence 99976543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=172.27 Aligned_cols=241 Identities=18% Similarity=0.162 Sum_probs=176.2
Q ss_pred EEEEE--EcCCeEEEEe--CCCCEEEEEeecCC-------------cceEEeeecceecCceEEEEeCCCceeeEEEEee
Q 046773 195 VSGII--ITDSQLIFAT--LDGDIHVAVIDDVA-------------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL 257 (453)
Q Consensus 195 V~~i~--f~g~~LasgS--~D~tIkvWd~~~~g-------------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS 257 (453)
+.+|. +++.++|||+ .|+.++||+.+... ..+..-|.+.+. .|.|+|||++ |||||
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~----CVR~S~dG~~---lAsGS 88 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVN----CVRFSPDGSY---LASGS 88 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCcee----EEEECCCCCe---Eeecc
Confidence 44444 5678899999 99999999976521 122223444443 5899999997 99999
Q ss_pred CCCeEEEeeCCC---CcEEecccccCCcceeeee---eeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCceEEE
Q 046773 258 AGRAFHIWDRQA---EEVFVGGDLTDHNTVMGWR---MLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQGMVLG 329 (453)
Q Consensus 258 ~D~tIrvWD~~t---g~~~~g~~l~~~~~v~~w~---~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~~~~ 329 (453)
.|+-|-||+-.. +..+ ++-.+...+.-|+ .|++|..-|..|..+|+..+++ |-|++|-|||.++.+++.+
T Consensus 89 DD~~v~iW~~~~~~~~~~f--gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVF--GSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred CcceEEEeeecccCCcccc--cccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 999999999874 1122 0101122233354 7899999999999999886554 4589999999999988777
Q ss_pred EeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC------CCeeEEEEeeCCCeEEEEeC
Q 046773 330 ERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA------DRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 330 ~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~------~~v~~~~~~~~~~~lls~s~ 403 (453)
+.+|...+.=.+++|.|..+++-|.|. +++||...+-.....++..- .-.+.+.++|||.++++..+
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsdDr-------tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSDDR-------TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eecccccccceEECCccCeeeeecCCc-------eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 777765544467888899999999998 99999977654444443321 22567788999999987643
Q ss_pred -----CeEEEEECCCCeEEEEecccCCceEE--EEec------C-------CC----EEEEE-eCCcEEEEecC
Q 046773 404 -----GVIRVWEVEGGEYMYSFRERIGEEVI--AFVG------D-------DR----HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 404 -----~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~------d-------~~----~lasg-~D~~IklWDl~ 452 (453)
.++.|-+-.+-++-..|-||... +. .|.| . +. ++|+| .|++|-||...
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~p-~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSAP-VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCCc-eEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 69999998888888999999987 65 5543 1 11 56788 99999999863
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=160.36 Aligned_cols=194 Identities=16% Similarity=0.207 Sum_probs=143.3
Q ss_pred CCCCCCCeEEEEEEecCC---EEEEEeCCCcEEEEECCCCeE-------EEEecCCCCCccccccceEEEEEEc---CCe
Q 046773 138 DVDNPDGLTCRCLTLSDL---YLACGFADGAVRLFDLTTRLH-------VRTFRPQHSDRLGQFSRAVSGIIIT---DSQ 204 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~~---~LaSGS~D~TIrlWD~~tg~~-------~~tl~gh~~~~~~~~s~~V~~i~f~---g~~ 204 (453)
||. +. .+.|.++.. .|+|||.|++|.+||+..... ...+.+|. ..|..++|. .+.
T Consensus 175 gH~--~e--g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--------~~VeDV~~h~~h~~l 242 (422)
T KOG0264|consen 175 GHE--KE--GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE--------DVVEDVAWHPLHEDL 242 (422)
T ss_pred eec--cc--ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC--------cceehhhccccchhh
Confidence 888 32 477888863 799999999999999976543 23345544 367777764 567
Q ss_pred EEEEeCCCCEEEEEeecC-C--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCC
Q 046773 205 LIFATLDGDIHVAVIDDV-A--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDH 281 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~-g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~ 281 (453)
++|++.|+.+.|||+.+. - .++...|.+.+. .|+|+|-+.+ .||+||.|+||+|||++.=+.
T Consensus 243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn----~~~fnp~~~~--ilAT~S~D~tV~LwDlRnL~~--------- 307 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN----CVAFNPFNEF--ILATGSADKTVALWDLRNLNK--------- 307 (422)
T ss_pred heeecCCCeEEEEEcCCCCCCCcccccccCCcee----EEEeCCCCCc--eEEeccCCCcEEEeechhccc---------
Confidence 899999999999999851 1 345556777665 5999999987 599999999999999976331
Q ss_pred cceeeeeeeeeeccceeEEEEcCCc-eEEE--EcCCcEEEEECCCCceE--------------EEEeeccCCeEEEEEEe
Q 046773 282 NTVMGWRMLTEFTEFVGRVRVTSHE-SAVA--CTSSRVITFDLRNQGMV--------------LGERGYGRGLYVTSVDV 344 (453)
Q Consensus 282 ~~v~~w~~l~~h~~~v~~v~~s~~~-~~va--s~d~tIrlWDl~t~~~~--------------~~~~g~~~~~~v~~~~~ 344 (453)
..|++.+|.+.|.+|.++|+. .++| +.|+++.|||+..-+.. ....||. ..|..|+.
T Consensus 308 ----~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~--~kV~DfsW 381 (422)
T KOG0264|consen 308 ----PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT--AKVSDFSW 381 (422)
T ss_pred ----CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc--cccccccC
Confidence 136788999999999999865 3444 45789999999753211 2224454 45677776
Q ss_pred cCC---EEEEEeCCCccccCcceEEEEEcC
Q 046773 345 NAE---AYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 345 ~g~---~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
++. .++|++.|+ ...||.+.
T Consensus 382 np~ePW~I~SvaeDN-------~LqIW~~s 404 (422)
T KOG0264|consen 382 NPNEPWTIASVAEDN-------ILQIWQMA 404 (422)
T ss_pred CCCCCeEEEEecCCc-------eEEEeecc
Confidence 654 578888887 99999875
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=159.46 Aligned_cols=268 Identities=11% Similarity=0.170 Sum_probs=186.2
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEE---EEecCCCCCccccccceEEE--EEEcCCeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHV---RTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~---~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~tIkvWd~ 219 (453)
|.+++.|. +.+-||+ -+.|||||+....-. -.|.-... +. .+++ +..||+.|+.|+.-.|+-|||+
T Consensus 422 VcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~r---dn---yiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNR---DN---YIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred EEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCc---cc---ceeeeEecCCCceEEeccccceeeeeec
Confidence 77888885 5777886 678999999654211 11110000 11 2333 4468999999999999999999
Q ss_pred ecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 220 DDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 220 ~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
..+-.+. ......-......++.+||.+. .+++-.|+.|+|||+...... .+++||++-+.|
T Consensus 495 AapTpri-kaeltssapaCyALa~spDakv---cFsccsdGnI~vwDLhnq~~V--------------rqfqGhtDGasc 556 (705)
T KOG0639|consen 495 AAPTPRI-KAELTSSAPACYALAISPDAKV---CFSCCSDGNIAVWDLHNQTLV--------------RQFQGHTDGASC 556 (705)
T ss_pred cCCCcch-hhhcCCcchhhhhhhcCCccce---eeeeccCCcEEEEEcccceee--------------ecccCCCCCcee
Confidence 8732111 1100000011224788999885 567788999999999877643 468899999999
Q ss_pred EEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC-CeeE
Q 046773 300 VRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-FEEV 376 (453)
Q Consensus 300 v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~v 376 (453)
+-+++++ +-.++-|.+||.||++++..+.... ...++......|.++.++++-..+ .+|...+ +..-
T Consensus 557 Idis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens---------~vevlh~skp~k 626 (705)
T KOG0639|consen 557 IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENS---------NVEVLHTSKPEK 626 (705)
T ss_pred EEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccC---------cEEEEecCCccc
Confidence 9999665 5667779999999999986554321 122344444568889999887666 4555443 3334
Q ss_pred EEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 377 CRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 377 ~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
..+..|++.|.++-|.+-|+++++.+- +-+..|-+--|..+...+.- .. |. .++.|+++||+| -|++..|+.+
T Consensus 627 yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~-Ss-VlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 627 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SS-VLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc-Cc-ceeeeeccCceEEEecCCCcceEEEEE
Confidence 556678888999999999999887765 89999999989887665433 23 55 678999999999 8988888765
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-17 Score=174.76 Aligned_cols=266 Identities=15% Similarity=0.182 Sum_probs=180.1
Q ss_pred CCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||-|. |||..|+ +.+|+|||.|..+|||.++|++|+.+.+||.+ .++.++.+ ..+++++|.|..
T Consensus 188 gH~na----Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--------ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 188 GHRNA----VYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--------DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred hhhhh----eeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--------ccchhccchhhhhhhhcccCce
Confidence 89866 8999998 57999999999999999999999999999876 35555544 446899999999
Q ss_pred EEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC-CCcEEecccccCCcceeeeeee
Q 046773 214 IHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ-AEEVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 214 IkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~-tg~~~~g~~l~~~~~v~~w~~l 290 (453)
|+||-+.+ | +..+++|+|.|. .++|+|- +|.|.|+|+++||.+ .-..+.- .|-. .
T Consensus 256 IrvWrl~~-~~pvsvLrghtgavt----aiafsP~-------~sss~dgt~~~wd~r~~~~~y~p----rp~~------~ 313 (1113)
T KOG0644|consen 256 IRVWRLPD-GAPVSVLRGHTGAVT----AIAFSPR-------ASSSDDGTCRIWDARLEPRIYVP----RPLK------F 313 (1113)
T ss_pred EEEEecCC-CchHHHHhcccccee----eeccCcc-------ccCCCCCceEeccccccccccCC----CCCC------c
Confidence 99999988 5 788999999875 5899994 467899999999987 2222211 0000 0
Q ss_pred eeeccceeEEEEcC--CceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 291 TEFTEFVGRVRVTS--HESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 291 ~~h~~~v~~v~~s~--~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
.+ .+-+.++.|-. +...+++.|++-+.|....-.+. .. .-+.++.-+-.....+++-.+- -+++|
T Consensus 314 ~~-~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~--~~---~lif~t~ssd~~~~~~~ar~~~-------~~~vw 380 (1113)
T KOG0644|consen 314 TE-KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR--SN---LLIFVTRSSDLSSIVVTARNDH-------RLCVW 380 (1113)
T ss_pred cc-ccceeeeeccccccccccccCCcccccchhhHhhhh--cc---ceEEEeccccccccceeeeeee-------Eeeee
Confidence 00 12334444432 22345556677777765532110 00 0011111110011223333333 67899
Q ss_pred EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEe-cccCCceEE-EEecCCCEEEEE-eC
Q 046773 369 RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSF-RERIGEEVI-AFVGDDRHVAAS-CG 443 (453)
Q Consensus 369 ~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL-~gh~~~~V~-a~s~d~~~lasg-~D 443 (453)
++-+|+.++.+.+|.+.+.-+-++|-...++.+++ |..-|||+..|..++.. .||... |. .|++||+.++.. .-
T Consensus 381 nl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl-~d~kFSqdgts~~lsd~h 459 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKL-VDGKFSQDGTSIALSDDH 459 (1113)
T ss_pred ecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccccee-eccccCCCCceEecCCCC
Confidence 99999888888888888888888885444444444 88999999999776655 455444 66 899999998877 55
Q ss_pred CcEEEEec
Q 046773 444 TNIHLWDF 451 (453)
Q Consensus 444 ~~IklWDl 451 (453)
|.+.|..+
T Consensus 460 gql~i~g~ 467 (1113)
T KOG0644|consen 460 GQLYILGT 467 (1113)
T ss_pred CceEEecc
Confidence 67776544
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=159.00 Aligned_cols=231 Identities=8% Similarity=0.031 Sum_probs=153.0
Q ss_pred ceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--c---ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEe
Q 046773 193 RAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--N---ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIW 265 (453)
Q Consensus 193 ~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~---~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvW 265 (453)
..|++++++ |.+++|||.|.+|+.||...-. . ..+.-...+.+ .++.|++.|..++ .+||+ ..+||.
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i---~sl~ys~Tg~~iL-vvsg~--aqakl~ 241 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQI---NSLQYSVTGDQIL-VVSGS--AQAKLL 241 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccccc---ceeeecCCCCeEE-EEecC--cceeEE
Confidence 478888886 7799999999999999987411 1 11111112221 2589999998743 34444 568999
Q ss_pred eCCCCc---EEecccccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCce----EEEEeeccC
Q 046773 266 DRQAEE---VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGM----VLGERGYGR 335 (453)
Q Consensus 266 D~~tg~---~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~----~~~~~g~~~ 335 (453)
|-..-+ +..|. -.+.....-.||+..+++..++|.. .+.+|.|+|+||||+..-+. +++....+.
T Consensus 242 DRdG~~~~e~~KGD-----QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGD-----QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ccCCceeeeeeccc-----hhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 976655 22331 1122222346899999999998854 34556689999999986432 222111122
Q ss_pred CeE--EEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC--e-eEEEEEecCC--CeeEEEEeeCCCeEEEEeC-CeEE
Q 046773 336 GLY--VTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF--E-EVCRFSLRAD--RNVNVMGCMNQGYALMCVE-GVIR 407 (453)
Q Consensus 336 ~~~--v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg--~-~v~~l~~~~~--~v~~~~~~~~~~~lls~s~-~tIr 407 (453)
.+. +.++++++..+|.|..|| .|.+|+...- . ..+.-..|.. .+.++.|+.+|.+|++-+. .++|
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DG-------SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDG-------SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred ccCceeeecCCCcchhhhcccCC-------ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 233 344788888999999999 9999996421 1 1122234443 5889999999999998776 9999
Q ss_pred EEECCC-CeEEEEecccCCc-e-EE-EEecCCCEEEEE
Q 046773 408 VWEVEG-GEYMYSFRERIGE-E-VI-AFVGDDRHVAAS 441 (453)
Q Consensus 408 lWD~~t-G~~l~tL~gh~~~-~-V~-a~s~d~~~lasg 441 (453)
|||+.. .+||.+..|-... . -. +||||.+.|++|
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TG 427 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTG 427 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEec
Confidence 999987 5777766553221 0 12 899999999987
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=145.77 Aligned_cols=249 Identities=12% Similarity=0.129 Sum_probs=160.4
Q ss_pred EEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeee---ccee-cCceEEEEeCCCceee
Q 046773 178 RTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHF---GSVM-DDGVLIDFTGCSRYWV 251 (453)
Q Consensus 178 ~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~---~~v~-~~~~~v~Fs~dg~~~~ 251 (453)
.+|+||.. .|++++|+ |..|||++.|++|+||++.. .+.+.|. ..+. +-...|.|+||-+-+
T Consensus 80 ~~LKgH~~--------~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D---F~~~eHr~~R~nve~dhpT~V~FapDc~s~- 147 (420)
T KOG2096|consen 80 SVLKGHKK--------EVTDVAFSSDGKKLATISGDRSIRLWDVRD---FENKEHRCIRQNVEYDHPTRVVFAPDCKSV- 147 (420)
T ss_pred hhhhccCC--------ceeeeEEcCCCceeEEEeCCceEEEEecch---hhhhhhhHhhccccCCCceEEEECCCcceE-
Confidence 35778765 68888885 78999999999999999976 2222221 0000 111258999997753
Q ss_pred EEEEeeCCCeEEEeeCCCCcEEecccccCCcceee-eeeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEE
Q 046773 252 GLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMG-WRMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVL 328 (453)
Q Consensus 252 ~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~-w~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~ 328 (453)
+++.-...+++++-+...+- | .++-+-...+ .+.-+.|.-.+-.+-+.++.. +++|.|.+|.|||++ |+.+.
T Consensus 148 -vv~~~~g~~l~vyk~~K~~d--G-~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~ 222 (420)
T KOG2096|consen 148 -VVSVKRGNKLCVYKLVKKTD--G-SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ 222 (420)
T ss_pred -EEEEccCCEEEEEEeeeccc--C-CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee
Confidence 44555678899997654331 1 0000000000 012234544454555555553 455667889999999 66554
Q ss_pred EEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC---CC-----eeEEEEEecCCCeeEEEEeeCCCeEEE
Q 046773 329 GERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD---TF-----EEVCRFSLRADRNVNVMGCMNQGYALM 400 (453)
Q Consensus 329 ~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~---tg-----~~v~~l~~~~~~v~~~~~~~~~~~lls 400 (453)
........++-.+++|+|+.++++..-. +++||..- .| ..+..|.+|...|..++|+++++++++
T Consensus 223 ~idtnq~~n~~aavSP~GRFia~~gFTp-------DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSPDGRFIAVSGFTP-------DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT 295 (420)
T ss_pred eeccccccccceeeCCCCcEEEEecCCC-------CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence 4322233455578999999998887777 89999753 22 245567888888999999999999998
Q ss_pred EeC-CeEEEEECCC----C---eEEEEec--ccC--CceEE-EEecCCCEEEEEeCCcEEEEe
Q 046773 401 CVE-GVIRVWEVEG----G---EYMYSFR--ERI--GEEVI-AFVGDDRHVAASCGTNIHLWD 450 (453)
Q Consensus 401 ~s~-~tIrlWD~~t----G---~~l~tL~--gh~--~~~V~-a~s~d~~~lasg~D~~IklWD 450 (453)
.|- |++||||+.- + +.|.+.+ -|. +..+. +++|.++.||.+...+++++.
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 886 9999999863 2 2233331 121 22366 889999999877556677664
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-15 Score=142.57 Aligned_cols=168 Identities=19% Similarity=0.249 Sum_probs=122.8
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g 223 (453)
|.++++=| -...|+|+|+|+||||..|-+..-+|+-. +.+ ++-+.+.++.+--.+|.|..|-.|++-|+.+ |
T Consensus 104 iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-~~V---YshamSp~a~sHcLiA~gtr~~~VrLCDi~S-G 178 (397)
T KOG4283|consen 104 ISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-GKV---YSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-G 178 (397)
T ss_pred eeeeEEeeecCceeecccccceEEEeecccceeeEEeecC-cee---ehhhcChhhhcceEEEEecCCCcEEEEeccC-C
Confidence 67777644 47899999999999999999998887632 111 1223333444455788888899999999998 6
Q ss_pred --cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceee--eeeeeeecccee
Q 046773 224 --NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMG--WRMLTEFTEFVG 298 (453)
Q Consensus 224 --~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~--w~~l~~h~~~v~ 298 (453)
-+++.+|.+.|. .|..+|...| .||+||.|++||+||++.-. +|.. |..+++... .++=+.|.+.|+
T Consensus 179 s~sH~LsGHr~~vl----aV~Wsp~~e~--vLatgsaDg~irlWDiRrasgcf~~--lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 179 SFSHTLSGHRDGVL----AVEWSPSSEW--VLATGSADGAIRLWDIRRASGCFRV--LDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred cceeeeccccCceE----EEEeccCcee--EEEecCCCceEEEEEeecccceeEE--eecccCccCccccccccccceee
Confidence 689999988775 5899999998 59999999999999998642 3321 111221111 123457889999
Q ss_pred EEEEcCCce--EEEEcCCcEEEEECCCCceE
Q 046773 299 RVRVTSHES--AVACTSSRVITFDLRNQGMV 327 (453)
Q Consensus 299 ~v~~s~~~~--~vas~d~tIrlWDl~t~~~~ 327 (453)
.++++.++. ++.+.|..+|+|+.++|.-.
T Consensus 251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 251 GLAWTSDARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred eeeecccchhhhhccCccceEEeecccCccc
Confidence 999987764 44456889999999998543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-15 Score=154.07 Aligned_cols=277 Identities=14% Similarity=0.126 Sum_probs=176.2
Q ss_pred CCCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--C-eEEEEeCCC
Q 046773 136 PSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--S-QLIFATLDG 212 (453)
Q Consensus 136 ~~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~-~LasgS~D~ 212 (453)
..||+ +-|.+.++.+++.+|||||.|||||||.+.||+|+++..-. ..|.+|+|.+ + -++..+.+.
T Consensus 396 yrGHt--g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---------~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 396 YRGHT--GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---------SEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred EeccC--CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---------ceeEEEEecCCCCceeEEEEecC
Confidence 45998 44444445556789999999999999999999999998621 2577777753 2 233333333
Q ss_pred CEEE---------------------------------EEeec-----CCcceEEeeecceecCceEEEEeCCCceeeEEE
Q 046773 213 DIHV---------------------------------AVIDD-----VANETRTAHFGSVMDDGVLIDFTGCSRYWVGLY 254 (453)
Q Consensus 213 tIkv---------------------------------Wd~~~-----~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~La 254 (453)
++-| |.-.. .|+++...|...| ..|..+.+|++++.+.
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i----~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI----RQVTWHRKGDYLATVM 540 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc----ceeeeecCCceEEEec
Confidence 3222 21100 0000000111111 1367888888754333
Q ss_pred EeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEEEcCCcEEEEECCCCceEEEE-ee
Q 046773 255 AGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVACTSSRVITFDLRNQGMVLGE-RG 332 (453)
Q Consensus 255 SgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~~~-~g 332 (453)
--+..+.|-|.++..+.... .++--.+.|.+|.|+|.. .+..+....|||+||..+...+.+ .|
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~--------------PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg 606 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQS--------------PFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTG 606 (733)
T ss_pred cCCCcceEEEEecccccccC--------------chhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcC
Confidence 23344667777776554211 011223457889999754 445566678999999875433332 22
Q ss_pred ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEE-
Q 046773 333 YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVW- 409 (453)
Q Consensus 333 ~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlW- 409 (453)
...+.-.++++.|+.++.+|.|+ -+...|++-. ++.+++..|+..++++++++---.++++++ +++.|.
T Consensus 607 -~kwiS~msihp~GDnli~gs~d~-------k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 607 -SKWISSMSIHPNGDNLILGSYDK-------KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred -CeeeeeeeecCCCCeEEEecCCC-------eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 22233456678889999999999 7777788754 566778889999999999876666677777 888777
Q ss_pred -----ECCCC---eEEEEecccCCc---eEE--EEecCCCEEEEE-eCCcEEEE
Q 046773 410 -----EVEGG---EYMYSFRERIGE---EVI--AFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 410 -----D~~tG---~~l~tL~gh~~~---~V~--a~s~d~~~lasg-~D~~IklW 449 (453)
|+-.. -.+..|+||.-. .|- .|.|...+|.|+ .|++|+||
T Consensus 679 g~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 679 GMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 33222 336678888421 133 578999999998 99999998
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-14 Score=138.38 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=68.3
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCC----eeEEEEEecCCCeeEEEEeeCCC---eEEEEeC--CeEEEEECCCC----
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTF----EEVCRFSLRADRNVNVMGCMNQG---YALMCVE--GVIRVWEVEGG---- 414 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg----~~v~~l~~~~~~v~~~~~~~~~~---~lls~s~--~tIrlWD~~tG---- 414 (453)
.++.++.+..+ +-+.++||.-+.+ ..+.++..+++-|+.+.|.|+-+ ++++.+. | |+||.++.-
T Consensus 186 ~iAvgs~e~a~--~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i 262 (361)
T KOG2445|consen 186 LIAVGSDEDAP--HLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI 262 (361)
T ss_pred eEEEEcccCCc--cccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh
Confidence 56666665322 2236788865543 24556677888899999998743 4444443 6 999999831
Q ss_pred ----------------eEEEEecccCCceEEEE--ecCCCEEEEE-eCCcEEEEe
Q 046773 415 ----------------EYMYSFRERIGEEVIAF--VGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 415 ----------------~~l~tL~gh~~~~V~a~--s~d~~~lasg-~D~~IklWD 450 (453)
+.+..|.+|.+. ||.+ .--|.+|+|. .||+||||.
T Consensus 263 ~~ee~~~~~~~~~l~v~~vs~~~~H~~~-VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 263 EEEEVLAPDLMTDLPVEKVSELDDHNGE-VWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred hhhcccCCCCccccceEEeeeccCCCCc-eEEEEEeeeeeEEeecCCCceeeehh
Confidence 224446788888 9954 4688899988 999999996
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-15 Score=155.73 Aligned_cols=219 Identities=13% Similarity=0.179 Sum_probs=165.6
Q ss_pred EEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 205 LIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
++.-+.+..+.+|+..+ | .+...+... .....+|.++++|+. ||.|-.+++|.|||+++.+..
T Consensus 190 ~laValg~~vylW~~~s-~-~v~~l~~~~-~~~vtSv~ws~~G~~---LavG~~~g~v~iwD~~~~k~~----------- 252 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASS-G-SVTELCSFG-EELVTSVKWSPDGSH---LAVGTSDGTVQIWDVKEQKKT----------- 252 (484)
T ss_pred eEEEEecceEEEEecCC-C-ceEEeEecC-CCceEEEEECCCCCE---EEEeecCCeEEEEehhhcccc-----------
Confidence 34445667789999877 5 222222211 112235999999996 899999999999999886632
Q ss_pred eeeeeeee-eccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEE-EeeccCCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 285 MGWRMLTE-FTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 285 ~~w~~l~~-h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
.++.+ |...|.+++.....+.+++.++.|..+|++..+.... ..+|.+.+-...+++++..++++..|.
T Consensus 253 ---~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN------ 323 (484)
T KOG0305|consen 253 ---RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDN------ 323 (484)
T ss_pred ---ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCcc------
Confidence 23445 8889999998876666667789999999998765444 466777666667788899999988888
Q ss_pred ceEEEEEcCCCeeEEEEEecCCCeeEEEEeeC-CCeEEEEeC---CeEEEEECCCCeEEEEecccCCceEE--EEecCCC
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADRNVNVMGCMN-QGYALMCVE---GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDR 436 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~-~~~lls~s~---~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~ 436 (453)
.+.|||....+.+..+..|...|..+++||- .+.|+++++ ++||+||+.+|+++..+. ++..|. .+++..+
T Consensus 324 -~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 324 -VVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYK 400 (484)
T ss_pred -ceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCC
Confidence 9999999888888889999999999999995 445555544 899999999999998874 444465 5578887
Q ss_pred EEEEE---eCCcEEEEecC
Q 046773 437 HVAAS---CGTNIHLWDFG 452 (453)
Q Consensus 437 ~lasg---~D~~IklWDl~ 452 (453)
-|+++ .++.|.||+..
T Consensus 401 Ei~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 401 ELLSTHGYSENQITLWKYP 419 (484)
T ss_pred EEEEecCCCCCcEEEEecc
Confidence 77664 78899999873
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-14 Score=153.59 Aligned_cols=186 Identities=12% Similarity=0.120 Sum_probs=134.5
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEE
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVIT 318 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrl 318 (453)
|+.+++|.+ .+-|+..++|-++|+++|.... +.. .-..|..+|..|++++.+ +++++.++-++.
T Consensus 454 v~vs~CGNF---~~IG~S~G~Id~fNmQSGi~r~--sf~---------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 454 VCVSFCGNF---VFIGYSKGTIDRFNMQSGIHRK--SFG---------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKF 519 (910)
T ss_pred EEEeccCce---EEEeccCCeEEEEEcccCeeec--ccc---------cCccccCceeEEEecCCCceEEEccCcceEEE
Confidence 455556655 3456667777777777776210 000 013677899999998655 566677899999
Q ss_pred EECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCe
Q 046773 319 FDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGY 397 (453)
Q Consensus 319 WDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~ 397 (453)
||......+... .++.... ....-..+.++.+-.|- .|+|.|..|-+-++.|.+|.+.+..+.|+|+|++
T Consensus 520 w~f~~k~l~~~l~l~~~~~~--iv~hr~s~l~a~~~ddf-------~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 520 WDFKKKVLKKSLRLGSSITG--IVYHRVSDLLAIALDDF-------SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred EecCCcceeeeeccCCCcce--eeeeehhhhhhhhcCce-------eEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 999986544333 3333222 22333345566677777 8999999998888999999999999999999999
Q ss_pred EEEEeC-CeEEEEECCCCeEEEEecccCCceEE-EEecCCCEEEEE-eC-CcEEEEe
Q 046773 398 ALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI-AFVGDDRHVAAS-CG-TNIHLWD 450 (453)
Q Consensus 398 lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~-a~s~d~~~lasg-~D-~~IklWD 450 (453)
+++++- ++||+||+.||.++--|.--... +. +|+|+|.+||+. .| .-|.||-
T Consensus 591 lisasmD~tIr~wDlpt~~lID~~~vd~~~-~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 591 LISASMDSTIRTWDLPTGTLIDGLLVDSPC-TSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EEEeecCCcEEEEeccCcceeeeEecCCcc-eeeEECCCCCEEEEEEecCceEEEEE
Confidence 998876 99999999999998777322222 33 789999999999 77 7899994
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-15 Score=150.00 Aligned_cols=213 Identities=13% Similarity=0.198 Sum_probs=155.6
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
|.||+-++ .+|+.|.--+.|.||.+.||+.+.++.+|-. .|++|.|+ |..++|||.|+.|.+|.+..
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ--------~ITcL~fs~dgs~iiTgskDg~V~vW~l~~- 154 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQ--------SITCLKFSDDGSHIITGSKDGAVLVWLLTD- 154 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcc--------ceeEEEEeCCCcEEEecCCCccEEEEEEEe-
Confidence 78998875 5788777899999999999999999987643 78999985 56899999999999998754
Q ss_pred CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 223 ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 223 g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
|+++..|+++ +- .+.+.+|+-+|..+.+
T Consensus 155 ------------------------------lv~a~~~~~~-----~p-----------------~~~f~~HtlsITDl~i 182 (476)
T KOG0646|consen 155 ------------------------------LVSADNDHSV-----KP-----------------LHIFSDHTLSITDLQI 182 (476)
T ss_pred ------------------------------ecccccCCCc-----cc-----------------eeeeccCcceeEEEEe
Confidence 3344444311 00 1223355666666666
Q ss_pred cCC----ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC------
Q 046773 303 TSH----ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT------ 372 (453)
Q Consensus 303 s~~----~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t------ 372 (453)
.+. .++++|-|.|||+||+..+..+++.... .......++|.......|+.+| .|-+-+...
T Consensus 183 g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G-------~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 183 GSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEG-------KIFQNLLFKLSGQSA 254 (476)
T ss_pred cCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcc-------eEEeeehhcCCcccc
Confidence 543 2577788999999999999877665332 1233456788888889999999 443333221
Q ss_pred ----------CeeEEEEEecCC--CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE
Q 046773 373 ----------FEEVCRFSLRAD--RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI 429 (453)
Q Consensus 373 ----------g~~v~~l~~~~~--~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~ 429 (453)
+..+..+.+|.+ .|..++.+.|+..|++++. |+|.|||+.+-+|++++.--.+. |+
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgp-Vt 323 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGP-VT 323 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccc-cc
Confidence 234556777777 6889999999998888877 99999999999999998644445 65
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-15 Score=154.21 Aligned_cols=291 Identities=17% Similarity=0.176 Sum_probs=180.1
Q ss_pred CCeEEEE--EEecC-----CEEEEEeCCCcEEEEECCCCeEE---EEecCCCCCccccccceEEEEEE--cCCeEEEEeC
Q 046773 143 DGLTCRC--LTLSD-----LYLACGFADGAVRLFDLTTRLHV---RTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATL 210 (453)
Q Consensus 143 d~v~v~~--lafs~-----~~LaSGS~D~TIrlWD~~tg~~~---~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~ 210 (453)
|++++.- ..|+. .+||-+-.|+-|.|+|.+...-. +.|+.... ++ .+|-.+.. ...+|+++|-
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~a-H~----nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLA-HK----NAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccccc-cc----ceeEeeccCCCceeEEEccC
Confidence 4555665 45653 47999999999999998765432 22222111 11 13433432 2457999999
Q ss_pred CCCEEEEEeecC---CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---------EEec-cc
Q 046773 211 DGDIHVAVIDDV---ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---------VFVG-GD 277 (453)
Q Consensus 211 D~tIkvWd~~~~---g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---------~~~g-~~ 277 (453)
|.|||+||+.+. |...+.+|++.+- +++|.|+..- .+++|+.|+.|.|||++-.. ++.+ |.
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~Svk----S~cf~~~n~~--vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n 194 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVK----SECFMPTNPA--VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHN 194 (720)
T ss_pred Cceeeeeeeccceeecceeecccccccc----hhhhccCCCc--ceeeccCCCcEEEEEEeccchhhHHHHhhhhhcccc
Confidence 999999999873 2345667887764 4789888774 58999999999999987321 1111 11
Q ss_pred c-cCCcc-----eeeeeee-eeeccceeEEEEc-CCceEEEEc-CCcEEEEECCCCceEEEE------eeccC-----Ce
Q 046773 278 L-TDHNT-----VMGWRML-TEFTEFVGRVRVT-SHESAVACT-SSRVITFDLRNQGMVLGE------RGYGR-----GL 337 (453)
Q Consensus 278 l-~~~~~-----v~~w~~l-~~h~~~v~~v~~s-~~~~~vas~-d~tIrlWDl~t~~~~~~~------~g~~~-----~~ 337 (453)
. +.|.. ...|..- ....+.|..|.|- .+.+++++. |++||+|||+...+.... ..+.+ +.
T Consensus 195 ~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 195 TAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred CCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence 1 01111 1111100 0112335555553 445666665 899999999987665331 11222 22
Q ss_pred EEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC--eeEEEEEecCCCeeEE--EEeeCCCeEEEEeC-CeEEEEECC
Q 046773 338 YVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF--EEVCRFSLRADRNVNV--MGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 338 ~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg--~~v~~l~~~~~~v~~~--~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
...+++-+|.+|.....|+ +|-.|++.+- .++..+.++...-..+ ..++++.++++++. ..+.+|.+.
T Consensus 275 ~nL~lDssGt~L~AsCtD~-------sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCTDN-------SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred EEEEecCCCCeEEEEecCC-------cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence 2344566678877666788 9999988752 2233333332221111 23578899998887 999999999
Q ss_pred CCeE-EEEecccCCceEEEE----ecCCCEEEEEeCCcEEEEecC
Q 046773 413 GGEY-MYSFRERIGEEVIAF----VGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 413 tG~~-l~tL~gh~~~~V~a~----s~d~~~lasg~D~~IklWDl~ 452 (453)
+-+. ...|.||+-. |.++ +++...+.++.|.+++||++.
T Consensus 348 ~~e~~~~~l~Ght~e-Vt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 348 SPEAPPALLLGHTRE-VTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred CccCChhhhhCcceE-EEEEeeccccCCCceeeccCcceEEEecc
Confidence 8644 5567789877 7743 345555555599999999973
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-15 Score=147.49 Aligned_cols=233 Identities=18% Similarity=0.216 Sum_probs=144.9
Q ss_pred CEEEEEeCCCcEEEEECCCCeEE---EEec----------CCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEE
Q 046773 155 LYLACGFADGAVRLFDLTTRLHV---RTFR----------PQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAV 218 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~---~tl~----------gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd 218 (453)
+++|-|..|..|-|||+.--..+ .+|. +-.......|+.+|-++++. -..|||||.|+||++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 69999999999999998533221 1222 00000001123345445554 24799999999999999
Q ss_pred eecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccc
Q 046773 219 IDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 219 ~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
+++ | ..++..|.+.|. .+.|+|.--. .|.+||+|++|+|-|.+.-.. ...-|. ..+.
T Consensus 273 ~~~-g~p~~s~~~~~k~Vq----~l~wh~~~p~--~LLsGs~D~~V~l~D~R~~~~----------s~~~wk----~~g~ 331 (463)
T KOG0270|consen 273 VDT-GKPKSSITHHGKKVQ----TLEWHPYEPS--VLLSGSYDGTVALKDCRDPSN----------SGKEWK----FDGE 331 (463)
T ss_pred cCC-CCcceehhhcCCcee----EEEecCCCce--EEEeccccceEEeeeccCccc----------cCceEE----eccc
Confidence 998 5 334444555543 4788887443 488999999999999985221 111132 2345
Q ss_pred eeEEEEcCC---ceEEEEcCCcEEEEECCCC-ceEEEEeeccCCeEEEEEEec---CCEEEEEeCCCccccCcceEEEEE
Q 046773 297 VGRVRVTSH---ESAVACTSSRVITFDLRNQ-GMVLGERGYGRGLYVTSVDVN---AEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 297 v~~v~~s~~---~~~vas~d~tIrlWDl~t~-~~~~~~~g~~~~~~v~~~~~~---g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
|-.|+.++. ..+++..|++++=.|+++. +++.+...|... |.+++++ ++.++++|.++ ++++|+
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~--ISgl~~n~~~p~~l~t~s~d~-------~Vklw~ 402 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE--ISGLSVNIQTPGLLSTASTDK-------VVKLWK 402 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC--cceEEecCCCCcceeeccccc-------eEEEEe
Confidence 666776543 3455567799999999986 566666666554 4555433 56788999999 999998
Q ss_pred cCCCee--EEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEE
Q 046773 370 VDTFEE--VCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYM 417 (453)
Q Consensus 370 ~~tg~~--v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l 417 (453)
++.-.+ +..-.+.-....+.+.+|+--+.++.++ +.+||||+.++...
T Consensus 403 ~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 874321 2111111111233444555445555444 77999999886543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=150.47 Aligned_cols=200 Identities=16% Similarity=0.154 Sum_probs=135.9
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeC
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATL 210 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~ 210 (453)
.||++ . |.+|+++. +.|||||.|+||+|||+.+|+|.+++. ||+ ..|.+++|. +..|++||.
T Consensus 240 ~gHTd--a--vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~-------k~Vq~l~wh~~~p~~LLsGs~ 307 (463)
T KOG0270|consen 240 SGHTD--A--VLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHG-------KKVQTLEWHPYEPSVLLSGSY 307 (463)
T ss_pred ccchH--H--HHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hcC-------CceeEEEecCCCceEEEeccc
Confidence 48994 4 67888886 589999999999999999999999998 444 268888875 678999999
Q ss_pred CCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC-cEEecccccCCcceeeee
Q 046773 211 DGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE-EVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 211 D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg-~~~~g~~l~~~~~v~~w~ 288 (453)
|+++++-|.+.+. .....-..+.| ..|+..|.... ..++++.|++|+=.|++.- +.+ .
T Consensus 308 D~~V~l~D~R~~~~s~~~wk~~g~V----Ekv~w~~~se~--~f~~~tddG~v~~~D~R~~~~~v--------------w 367 (463)
T KOG0270|consen 308 DGTVALKDCRDPSNSGKEWKFDGEV----EKVAWDPHSEN--SFFVSTDDGTVYYFDIRNPGKPV--------------W 367 (463)
T ss_pred cceEEeeeccCccccCceEEeccce----EEEEecCCCce--eEEEecCCceEEeeecCCCCCce--------------e
Confidence 9999999977432 11111111222 23555555442 3567799999999999874 422 3
Q ss_pred eeeeeccceeEEEEc---CCceEEEEcCCcEEEEECCCCceEEEEeeccCCe-EEEEEEecCC---EEEEEeCCCccccC
Q 046773 289 MLTEFTEFVGRVRVT---SHESAVACTSSRVITFDLRNQGMVLGERGYGRGL-YVTSVDVNAE---AYIVVENRELENQN 361 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s---~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~-~v~~~~~~g~---~l~s~s~dg~~~~~ 361 (453)
++..|.++|.++.++ |..+.++|.|.+|+||++..-.--.. ..|.-.. ...||+++++ .++.+...+
T Consensus 368 t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v-~~~~~~~~rl~c~~~~~~~a~~la~GG~k~----- 441 (463)
T KOG0270|consen 368 TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV-KEHSFKLGRLHCFALDPDVAFTLAFGGEKA----- 441 (463)
T ss_pred EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc-ccccccccceeecccCCCcceEEEecCccc-----
Confidence 578899999999987 44466778889999999864321011 1111000 1345555543 345444444
Q ss_pred cceEEEEEcCCCeeE
Q 046773 362 RRLAIVRRVDTFEEV 376 (453)
Q Consensus 362 ~~~i~Iw~~~tg~~v 376 (453)
.++|||.-+...+
T Consensus 442 --~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 442 --VLRVWDIFTNSPV 454 (463)
T ss_pred --eEEEeecccChhH
Confidence 7899998876443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-13 Score=143.24 Aligned_cols=265 Identities=11% Similarity=0.064 Sum_probs=191.3
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeE-EEEecCCCCCccccccceEEEEEEc-CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLH-VRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~-~~tl~gh~~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIkvWd~~~~ 222 (453)
|.||||+. +.||.+=.|++|-||++..+=+ .+++.|+. .++|.+|++. +.+|.|.+.+++|--||+.+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~-------drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~- 99 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPE-------DRSIESLAWAEGGRLFSSGLSGSITEWDLHT- 99 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCC-------CCceeeEEEccCCeEEeecCCceEEEEeccc-
Confidence 78999986 5899999999999999988754 45565543 3578999997 78899999999999999987
Q ss_pred CcceEEeee---cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeecccee
Q 046773 223 ANETRTAHF---GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 223 g~~~~~~~~---~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
+ .++..+. +.+. .++.+|.+.. |+.|+.|+.+...++..+. ++. ..|.--++.|-
T Consensus 100 l-k~~~~~d~~gg~IW----siai~p~~~~---l~IgcddGvl~~~s~~p~~I~~~-------------r~l~rq~sRvL 158 (691)
T KOG2048|consen 100 L-KQKYNIDSNGGAIW----SIAINPENTI---LAIGCDDGVLYDFSIGPDKITYK-------------RSLMRQKSRVL 158 (691)
T ss_pred C-ceeEEecCCCccee----EEEeCCccce---EEeecCCceEEEEecCCceEEEE-------------eecccccceEE
Confidence 4 3333331 2222 3677777764 7888999988888887777 432 12333467899
Q ss_pred EEEEcCCce--EEEEcCCcEEEEECCCCceEEEE-----e-eccCCeEEEEE-EecCCEEEEEeCCCccccCcceEEEEE
Q 046773 299 RVRVTSHES--AVACTSSRVITFDLRNQGMVLGE-----R-GYGRGLYVTSV-DVNAEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 299 ~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~-----~-g~~~~~~v~~~-~~~g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
+|.++|+.. +.+|.|+.||+||+.++..++.. . .......|.++ ....+.+++|.+.| ++++||
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G-------~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAG-------TVTFWD 231 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCc-------eEEEEc
Confidence 999999876 66678999999999998776621 1 12234556665 35677899999999 999999
Q ss_pred cCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEe-CCeEEEEECCCCeE--EEE--ecccCCceEEEEecCCCEEEEE-eC
Q 046773 370 VDTFEEVCRFSLRADRNVNVMGCMNQGYALMCV-EGVIRVWEVEGGEY--MYS--FRERIGEEVIAFVGDDRHVAAS-CG 443 (453)
Q Consensus 370 ~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s-~~tIrlWD~~tG~~--l~t--L~gh~~~~V~a~s~d~~~lasg-~D 443 (453)
...|..++.+..|...|..++...+..++.+++ ++.|-..-..+++. +.. ...|... |.++.--+..|++| .|
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hd-vrs~av~~~~l~sgG~d 310 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHD-VRSMAVIENALISGGRD 310 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccc-ceeeeeecceEEeccee
Confidence 999999999888888899999888877776554 45555555555422 111 1245555 77655444477777 88
Q ss_pred CcEEE
Q 046773 444 TNIHL 448 (453)
Q Consensus 444 ~~Ikl 448 (453)
.++.+
T Consensus 311 ~~l~i 315 (691)
T KOG2048|consen 311 FTLAI 315 (691)
T ss_pred eEEEE
Confidence 77654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-14 Score=135.53 Aligned_cols=227 Identities=16% Similarity=0.172 Sum_probs=153.8
Q ss_pred ceEEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC
Q 046773 193 RAVSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE 270 (453)
Q Consensus 193 ~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg 270 (453)
..|+.+.|+ ...|+.+|.|++++++++...-....-.|.+.+. ..+|.++.+ .++|+.|+.||+.|+.++
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL----~c~F~d~~~----~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLL----DCAFADEST----IVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCcee----eeeccCCce----EEEeccCceEEEEEecCC
Confidence 367888887 3346666899999999987621111111333322 257888654 679999999999999999
Q ss_pred cEEecccccCCcceeeeeeeeeeccceeEEEEcC--CceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCE
Q 046773 271 EVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS--HESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEA 348 (453)
Q Consensus 271 ~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~--~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~ 348 (453)
+... +-.|..++.+|.+.+ +.++++|.|.+||+||.++..+..+. .....|.+++..++.
T Consensus 86 ~~~~---------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~---d~~kkVy~~~v~g~~ 147 (323)
T KOG1036|consen 86 NEDQ---------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF---DQGKKVYCMDVSGNR 147 (323)
T ss_pred ccee---------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc---ccCceEEEEeccCCE
Confidence 8432 335778888888873 34667788999999999974433332 122378999999999
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC--CCeeEEEEeeCC-CeEEEEeCCeEEEEECCCC----eEEEEec
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA--DRNVNVMGCMNQ-GYALMCVEGVIRVWEVEGG----EYMYSFR 421 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~--~~v~~~~~~~~~-~~lls~s~~tIrlWD~~tG----~~l~tL~ 421 (453)
|++|..+. .+.+||+.+-....+...++ -.+|.+...|++ +|.+++-+|.|-+=.+..- +.-+.|+
T Consensus 148 LvVg~~~r-------~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 148 LVVGTSDR-------KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred EEEeecCc-------eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence 99999988 89999987632211111111 115666666643 5555444577766666554 3356677
Q ss_pred ccCC--------ceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 422 ERIG--------EEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 422 gh~~--------~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
-|.. ++|+ +|+|--.++||| +||.|.+||+.
T Consensus 221 CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 221 CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 6631 2477 566777789999 99999999985
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-15 Score=153.25 Aligned_cols=234 Identities=17% Similarity=0.145 Sum_probs=179.1
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-----CCeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-----DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-----g~~LasgS~D~tIkvWd~ 219 (453)
+.|++.|| .+||+|-.-|++||+|+..-+.+.++..|.. .|-++.|+ ...|||||.|+-|+|+|+
T Consensus 462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHes--------EilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHES--------EILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred eEEEEECCCcceecccCccCceEEEEehhhhhhhheecccc--------eeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 66777765 6999999999999999999998888888765 46777776 347999999999999998
Q ss_pred ecC-C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC----CcEEecccccCCcceeeeeeeeee
Q 046773 220 DDV-A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA----EEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 220 ~~~-g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t----g~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
... - .+++-+|...|. .|-|...|-- .-+.|++.|+.|.. ++.. |.+|..|+ +++ ++
T Consensus 534 ~rny~l~qtld~HSssIT----svKFa~~gln-~~MiscGADksimF-r~~qk~~~g~~f~r~t----------~t~-~k 596 (1080)
T KOG1408|consen 534 KRNYDLVQTLDGHSSSIT----SVKFACNGLN-RKMISCGADKSIMF-RVNQKASSGRLFPRHT----------QTL-SK 596 (1080)
T ss_pred ccccchhhhhccccccee----EEEEeecCCc-eEEEeccCchhhhe-ehhccccCceeccccc----------ccc-cc
Confidence 651 2 577778877664 4788877611 12678899998743 3332 44554322 122 12
Q ss_pred ccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEee-ccC--CeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 294 TEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERG-YGR--GLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 294 ~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g-~~~--~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
.....+.++|.. ++.+|-|..|||+|+++++..+.++| |.+ ...-..++|+|.++++...|. ++.+.
T Consensus 597 -tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk-------tl~~~ 668 (1080)
T KOG1408|consen 597 -TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK-------TLCFV 668 (1080)
T ss_pred -ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC-------ceEEE
Confidence 234566777654 56778899999999999988777633 333 333356789999999888888 99999
Q ss_pred EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC
Q 046773 369 RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 369 ~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t 413 (453)
|.-+|+|+.++.+|...|..+-|.+|-+++++.++ +-|-||.+..
T Consensus 669 Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 669 DFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999999999999887 9999998864
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-12 Score=126.17 Aligned_cols=268 Identities=19% Similarity=0.306 Sum_probs=181.3
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeC-CCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CC-eEEEEeCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFA-DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DS-QLIFATLD 211 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~-D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~-~LasgS~D 211 (453)
+|. +. |.+++|++ ..+++++. |+++++|++.+++.+.++.+|.. .|.++++. +. .+++++.|
T Consensus 153 ~~~--~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~d 220 (466)
T COG2319 153 GHS--ES--VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD--------PVSSLAFSPDGGLLIASGSSD 220 (466)
T ss_pred cCc--cc--EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC--------ceEEEEEcCCcceEEEEecCC
Confidence 665 33 67888876 47888885 99999999999999999988654 46667665 44 45555999
Q ss_pred CCEEEEEeecCC--cc-eEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE-EecccccCCcceeee
Q 046773 212 GDIHVAVIDDVA--NE-TRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV-FVGGDLTDHNTVMGW 287 (453)
Q Consensus 212 ~tIkvWd~~~~g--~~-~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~-~~g~~l~~~~~v~~w 287 (453)
++|++||... + +. .+..|... ....|+|++.. +++++.|+++++||+..... +
T Consensus 221 ~~i~~wd~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~-------------- 277 (466)
T COG2319 221 GTIRLWDLST-GKLLRSTLSGHSDS-----VVSSFSPDGSL---LASGSSDGTIRLWDLRSSSSLL-------------- 277 (466)
T ss_pred CcEEEEECCC-CcEEeeecCCCCcc-----eeEeECCCCCE---EEEecCCCcEEEeeecCCCcEE--------------
Confidence 9999998764 4 22 23334322 11279999854 66899999999999987652 2
Q ss_pred eeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEe--eccCCeEEEEEEecC--CEEEEE-eCCCcccc
Q 046773 288 RMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGER--GYGRGLYVTSVDVNA--EAYIVV-ENRELENQ 360 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~--g~~~~~~v~~~~~~g--~~l~s~-s~dg~~~~ 360 (453)
..+.+|...+.++.++|+. .++++.|+++++||+.+........ .|.. .+..+.+.. ..++.+ ..++
T Consensus 278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~---- 351 (466)
T COG2319 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVSGGSDDG---- 351 (466)
T ss_pred EEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEEeecCCC----
Confidence 1124677899999999843 3444556779999999876554443 4443 334444322 345444 4555
Q ss_pred CcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEE-EeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCC
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALM-CVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDR 436 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls-~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~ 436 (453)
.+.+|+.............. .+..+.+.+ ...... +.. +.+++||.....+...+..+... +. .+.+++.
T Consensus 352 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 425 (466)
T COG2319 352 ---TIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR-VTSLDFSPDGK 425 (466)
T ss_pred ---cEEeeecCCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCc-EEEEEECCCCc
Confidence 88889988776222222111 145566666 433333 344 99999999999888877655333 44 5678898
Q ss_pred EEEEE-eCCcEEEEecC
Q 046773 437 HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 437 ~lasg-~D~~IklWDl~ 452 (453)
.++++ .++++++|++.
T Consensus 426 ~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 426 SLASGSSDNTIRLWDLK 442 (466)
T ss_pred EEEEecCCCcEEEEecc
Confidence 99887 99999999864
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-15 Score=155.40 Aligned_cols=221 Identities=14% Similarity=0.135 Sum_probs=146.0
Q ss_pred EEcCCeEEEEeCCCCEEEEEeecCC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe
Q 046773 199 IITDSQLIFATLDGDIHVAVIDDVA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV 274 (453)
Q Consensus 199 ~f~g~~LasgS~D~tIkvWd~~~~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~ 274 (453)
+++...||+++.-+.|-+||++..+ +..+..|.-.+. .|+|++---. .|.|||-|++||+||++...-.
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~----~ldfh~tep~--iliSGSQDg~vK~~DlR~~~S~- 169 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSAN----KLDFHSTEPN--ILISGSQDGTVKCWDLRSKKSK- 169 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccchhhhHhhhhcccee----eeeeccCCcc--EEEecCCCceEEEEeeeccccc-
Confidence 4567889999999999999998633 223444543332 4777776543 5899999999999999987611
Q ss_pred cccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEE-cCCcEEEEECCCC-ceEEEEeeccCCeEEEEEEecCCEEE
Q 046773 275 GGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVAC-TSSRVITFDLRNQ-GMVLGERGYGRGLYVTSVDVNAEAYI 350 (453)
Q Consensus 275 g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas-~d~tIrlWDl~t~-~~~~~~~g~~~~~~v~~~~~~g~~l~ 350 (453)
.+.++-++.|..|+|+|.. .+++. +.|.+++|||+.. +|.+.+..|..-+++...+|+++.||
T Consensus 170 -------------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lA 236 (839)
T KOG0269|consen 170 -------------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLA 236 (839)
T ss_pred -------------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceee
Confidence 1223456778889998643 45554 4589999999875 34444566655555555668788899
Q ss_pred EEeCCCccccCcceEEEEEcCCCeeEEEEEecC-CCeeEEEEeeCCCeEE-EEeC---CeEEEEECCCC-eEEEEecccC
Q 046773 351 VVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-DRNVNVMGCMNQGYAL-MCVE---GVIRVWEVEGG-EYMYSFRERI 424 (453)
Q Consensus 351 s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-~~v~~~~~~~~~~~ll-s~s~---~tIrlWD~~tG-~~l~tL~gh~ 424 (453)
+++.|+ +||||++.+++.-...+.+. .-+..+.+=|.-.+.+ +|+. ..|+|||++-- -.-.+|..|+
T Consensus 237 TGGRDK-------~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 237 TGGRDK-------MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred ecCCCc-------cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 999999 99999998754222111111 1133444555444444 4543 79999999864 3346788898
Q ss_pred CceEEEEe---cCCCEEEEE-eCCcEE
Q 046773 425 GEEVIAFV---GDDRHVAAS-CGTNIH 447 (453)
Q Consensus 425 ~~~V~a~s---~d~~~lasg-~D~~Ik 447 (453)
+. |..+. .|...+-+. .|++|.
T Consensus 310 ~~-vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 310 DS-VTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred cc-ccceeccCCCceeeEeecCccHHH
Confidence 87 76332 233445566 787763
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-13 Score=142.91 Aligned_cols=110 Identities=7% Similarity=0.120 Sum_probs=82.1
Q ss_pred EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeE--
Q 046773 340 TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEY-- 416 (453)
Q Consensus 340 ~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~-- 416 (453)
.+.+++++.++++..+. ...-..|+||+..+=..++.+.+|.-.|..+.|+||+++|++++- +|+.||....+..
T Consensus 531 l~~s~~gnliASaCKS~--~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e 608 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSS--LKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE 608 (764)
T ss_pred EEecCCCCEEeehhhhC--CccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh
Confidence 33455577777664443 222236788877765667778889888999999999999998886 9999998865322
Q ss_pred --EEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 417 --MYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 417 --l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
...++.|+.- || +++||++++|++ -|++|++|...
T Consensus 609 ~~fa~~k~HtRI-IWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 609 FRFACLKAHTRI-IWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred hhhccccccceE-EEEcccCcccceeEEecCCceEEEEecc
Confidence 2235678777 89 567999999999 99999999764
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=138.75 Aligned_cols=268 Identities=18% Similarity=0.200 Sum_probs=178.2
Q ss_pred EEEEEecC----CEEEEEeCCCcEEEEECCCCeE----EEEecCCCCCccccccceEEEEEEcC---CeEEEEeCCCCEE
Q 046773 147 CRCLTLSD----LYLACGFADGAVRLFDLTTRLH----VRTFRPQHSDRLGQFSRAVSGIIITD---SQLIFATLDGDIH 215 (453)
Q Consensus 147 v~~lafs~----~~LaSGS~D~TIrlWD~~tg~~----~~tl~gh~~~~~~~~s~~V~~i~f~g---~~LasgS~D~tIk 215 (453)
|.|++|-| +++|+|.--|+|-+||+.+.+. +.-+.+| +..|++|.|++ .++++.|.||||+
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h--------s~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH--------SGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC--------CccccceEecCCChhheeeeccCceee
Confidence 78999976 4799999999999999964432 3334443 34788898874 5899999999999
Q ss_pred EEEeecCCc--ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeee
Q 046773 216 VAVIDDVAN--ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 216 vWd~~~~g~--~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~ 292 (453)
+=|++. ++ ..+..-...... ...+|+.+.+. .|+..-.+ ...+||.+++. .+. .++-
T Consensus 261 ~~D~~~-~i~e~v~s~~~d~~~f--s~~d~~~e~~~--vl~~~~~G-~f~~iD~R~~~s~~~--------------~~~l 320 (498)
T KOG4328|consen 261 LQDFEG-NISEEVLSLDTDNIWF--SSLDFSAESRS--VLFGDNVG-NFNVIDLRTDGSEYE--------------NLRL 320 (498)
T ss_pred eeeecc-hhhHHHhhcCccceee--eeccccCCCcc--EEEeeccc-ceEEEEeecCCccch--------------hhhh
Confidence 999886 31 111111111100 12566666654 34444455 88999999866 221 2345
Q ss_pred eccceeEEEEcCC---ceEEEEcCCcEEEEECCCCc--e--EEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 293 FTEFVGRVRVTSH---ESAVACTSSRVITFDLRNQG--M--VLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 293 h~~~v~~v~~s~~---~~~vas~d~tIrlWDl~t~~--~--~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
|.-.|++|+++|- .++.+|.|+|.||||++.-+ . ++....|.+.+...+|+|++..+++-+.|. .|
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~-------~I 393 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN-------EI 393 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC-------ce
Confidence 6668999999863 46777889999999998632 1 122245666666667999988899988888 99
Q ss_pred EEEEcC----CCeeEEEEEecCC----C--eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCC---ceEEEE
Q 046773 366 IVRRVD----TFEEVCRFSLRAD----R--NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIG---EEVIAF 431 (453)
Q Consensus 366 ~Iw~~~----tg~~v~~l~~~~~----~--v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~---~~V~a~ 431 (453)
||||.. .-++.+++. |.+ | ....++.|+..+++++.- .-|-|.|-+.|+.+..|-+... ..|+++
T Consensus 394 Rv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~ 472 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEF 472 (498)
T ss_pred EEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceee
Confidence 999983 233344442 221 1 122456666555555554 8899999999997777644432 125688
Q ss_pred ecCCCEEEEE--eCCcEEEEe
Q 046773 432 VGDDRHVAAS--CGTNIHLWD 450 (453)
Q Consensus 432 s~d~~~lasg--~D~~IklWD 450 (453)
.|-+..+++| +-|.|.||-
T Consensus 473 HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 473 HPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccceeccCCccceEEEEe
Confidence 8977755555 788888884
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=140.45 Aligned_cols=235 Identities=12% Similarity=0.153 Sum_probs=158.3
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEeecCC--cceEE-
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVIDDVA--NETRT- 228 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~~~~g--~~~~~- 228 (453)
.+||.|++=|-|||-|+.+++|...++||.. +|..|.|. ++.|++||.|.+||+||+++ . +..+-
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~--------sINeik~~p~~~qlvls~SkD~svRlwnI~~-~~Cv~VfGG 176 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG--------SINEIKFHPDRPQLVLSASKDHSVRLWNIQT-DVCVAVFGG 176 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCc--------cchhhhcCCCCCcEEEEecCCceEEEEeccC-CeEEEEecc
Confidence 4899999999999999999999999999753 67778775 45799999999999999988 3 33333
Q ss_pred --eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---EEec--------cc--ccCCcc-eeeeeeeee
Q 046773 229 --AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---VFVG--------GD--LTDHNT-VMGWRMLTE 292 (453)
Q Consensus 229 --~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---~~~g--------~~--l~~~~~-v~~w~~l~~ 292 (453)
+|.+.|. +|+|+++|++ ++|+++|+++++|++.+.+ .+.- -+ .+.+.. +-..-+-.-
T Consensus 177 ~egHrdeVL----SvD~~~~gd~---i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di 249 (385)
T KOG1034|consen 177 VEGHRDEVL----SVDFSLDGDR---IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI 249 (385)
T ss_pred cccccCcEE----EEEEcCCCCe---eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence 3555443 5999999997 8899999999999999765 1100 00 000000 000012346
Q ss_pred eccceeEEEEcCCceEEEEcCCcEEEEEC-CCCceE------------EE-EeeccCCeEE--EEEEecCCEEEEEeCCC
Q 046773 293 FTEFVGRVRVTSHESAVACTSSRVITFDL-RNQGMV------------LG-ERGYGRGLYV--TSVDVNAEAYIVVENRE 356 (453)
Q Consensus 293 h~~~v~~v~~s~~~~~vas~d~tIrlWDl-~t~~~~------------~~-~~g~~~~~~v--~~~~~~g~~l~s~s~dg 356 (453)
|+++|-||+|-++-+++=|.++.|..|-. +-.+.+ +. ..-..-.+.- .+|++-.+.||.+...|
T Consensus 250 HrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 250 HRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred ccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC
Confidence 78899999988865555577789999987 211111 11 1111111111 23455567888888888
Q ss_pred ccccCcceEEEEEcCCCee--EEEEEec--CCCeeEEEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 357 LENQNRRLAIVRRVDTFEE--VCRFSLR--ADRNVNVMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 357 ~~~~~~~~i~Iw~~~tg~~--v~~l~~~--~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
.+-+||++.-++ ..++.-+ ...||...|+-++..++.+.+ ++|--||..
T Consensus 330 -------~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 330 -------KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred -------cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999987544 2222222 233777788888888877666 888888854
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-12 Score=128.93 Aligned_cols=260 Identities=12% Similarity=0.142 Sum_probs=156.6
Q ss_pred EEEEeCCCcEEEEECCC-Ce--EEEEecCCCCCccccccceEEEEEE--cCCeEEEEe-CCCCEEEEEeecCC-cceEEe
Q 046773 157 LACGFADGAVRLFDLTT-RL--HVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFAT-LDGDIHVAVIDDVA-NETRTA 229 (453)
Q Consensus 157 LaSGS~D~TIrlWD~~t-g~--~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS-~D~tIkvWd~~~~g-~~~~~~ 229 (453)
.++.++|++|++||+.+ |+ +++++... . ....+++ +++.|+.++ .++.|.+|+++..| +.....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~-~--------~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~ 75 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVP-G--------QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE 75 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecC-C--------CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee
Confidence 45567899999999974 43 55666421 1 1122444 577776554 57889999987424 222221
Q ss_pred eecceecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCCC-CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-
Q 046773 230 HFGSVMDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQA-EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE- 306 (453)
Q Consensus 230 ~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~t-g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~- 306 (453)
.. .......|+|+|+|++ |++++ .++.|.+||+++ |.... .+ ..+.+. .....++|+|++
T Consensus 76 ~~--~~~~p~~i~~~~~g~~---l~v~~~~~~~v~v~~~~~~g~~~~--------~~---~~~~~~-~~~~~~~~~p~g~ 138 (330)
T PRK11028 76 SP--LPGSPTHISTDHQGRF---LFSASYNANCVSVSPLDKDGIPVA--------PI---QIIEGL-EGCHSANIDPDNR 138 (330)
T ss_pred ec--CCCCceEEEECCCCCE---EEEEEcCCCeEEEEEECCCCCCCC--------ce---eeccCC-CcccEeEeCCCCC
Confidence 11 1112235899999997 45544 588999999974 32110 00 111111 224557788875
Q ss_pred -eEEEEc-CCcEEEEECCCCceEEE-------E-eeccCCeEEEEEEecCCEEEEEeC-CCccccCcceEEEEEcCC--C
Q 046773 307 -SAVACT-SSRVITFDLRNQGMVLG-------E-RGYGRGLYVTSVDVNAEAYIVVEN-RELENQNRRLAIVRRVDT--F 373 (453)
Q Consensus 307 -~~vas~-d~tIrlWDl~t~~~~~~-------~-~g~~~~~~v~~~~~~g~~l~s~s~-dg~~~~~~~~i~Iw~~~t--g 373 (453)
+++++. +++|++||+++.+.+.. . .+. ...-..|+++++.+++++. ++ ++.+|+++. +
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~--~p~~~~~~pdg~~lyv~~~~~~-------~v~v~~~~~~~~ 209 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA--GPRHMVFHPNQQYAYCVNELNS-------SVDVWQLKDPHG 209 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC--CCceEEECCCCCEEEEEecCCC-------EEEEEEEeCCCC
Confidence 334444 47899999987443321 1 121 1122467888888877654 55 999999973 3
Q ss_pred --eeEEEEEecCC------CeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEecccCC----ceEEEEecCCCEEE
Q 046773 374 --EEVCRFSLRAD------RNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFRERIG----EEVIAFVGDDRHVA 439 (453)
Q Consensus 374 --~~v~~l~~~~~------~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~gh~~----~~V~a~s~d~~~la 439 (453)
+.++++...|. +...+.++|+++++.++.. ++|.+||+.+.....++.++.. ..-.+|+|||++|+
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 210 EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLI 289 (330)
T ss_pred CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEE
Confidence 33444433322 2234778899998887643 8999999965432223333311 11127889999987
Q ss_pred EE--eCCcEEEEec
Q 046773 440 AS--CGTNIHLWDF 451 (453)
Q Consensus 440 sg--~D~~IklWDl 451 (453)
++ .+++|.||++
T Consensus 290 va~~~~~~v~v~~~ 303 (330)
T PRK11028 290 AAGQKSHHISVYEI 303 (330)
T ss_pred EEEccCCcEEEEEE
Confidence 66 5899999976
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-13 Score=142.05 Aligned_cols=273 Identities=12% Similarity=0.139 Sum_probs=178.5
Q ss_pred CCCCCCCCeEEEEEEecC-----CEEEEEeCCCcEEEEECCCC--eEEEEecCCCCCccccccceEEEEEEcCC-eEEEE
Q 046773 137 SDVDNPDGLTCRCLTLSD-----LYLACGFADGAVRLFDLTTR--LHVRTFRPQHSDRLGQFSRAVSGIIITDS-QLIFA 208 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~-----~~LaSGS~D~TIrlWD~~tg--~~~~tl~gh~~~~~~~~s~~V~~i~f~g~-~Lasg 208 (453)
.||.++ |+|+++=+ .+|+||+.|++|++|.++.- .|+.++.+|.. .++++... .+.++
T Consensus 51 ~GH~a~----VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~----------~~~cv~a~~~~~~~ 116 (764)
T KOG1063|consen 51 DGHVAR----VNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK----------ECVCVVARSSVMTC 116 (764)
T ss_pred cCCccc----eEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce----------eEEEEEeeeeEEEe
Confidence 499976 89998853 27999999999999999832 47888887543 23444432 33333
Q ss_pred -eCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCC-CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 209 -TLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGC-SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 209 -S~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~d-g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
+.|+++.+||.+... .+.++.-.+.+.. ..+++.|+ +.+ .||-|+.+..|.|.--.+.+ |
T Consensus 117 ~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ip--LcL~~~~~~~~~--lla~Ggs~~~v~~~s~~~d~-f---------- 181 (764)
T KOG1063|consen 117 KAADGTVSVWDKQQDEVFLLAVLRFEIKEAIP--LCLAALKNNKTF--LLACGGSKFVVDLYSSSADS-F---------- 181 (764)
T ss_pred eccCceEEEeecCCCceeeehheehhhhhHhh--HHHhhhccCCcE--EEEecCcceEEEEeccCCcc-e----------
Confidence 689999999995411 1222222221111 12456663 343 58889999888887655443 1
Q ss_pred eeeeeeeeeeccceeEEEEc---CCceEEEEc--CCcEEEEECCCCc--------------------eEE----------
Q 046773 284 VMGWRMLTEFTEFVGRVRVT---SHESAVACT--SSRVITFDLRNQG--------------------MVL---------- 328 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s---~~~~~vas~--d~tIrlWDl~t~~--------------------~~~---------- 328 (453)
..|..|.||+++|.+++|. .+.++++|+ |..||||.+.-+. .+.
T Consensus 182 -~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 182 -ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred -eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 1245688999999999986 334555543 5789999875433 111
Q ss_pred EE-eeccCCeEEEEE--EecCCEEEEEeCCCccccCcceEEEEEcCC--Ce-----eEEEEEecCCCeeEEEEeeCCCeE
Q 046773 329 GE-RGYGRGLYVTSV--DVNAEAYIVVENRELENQNRRLAIVRRVDT--FE-----EVCRFSLRADRNVNVMGCMNQGYA 398 (453)
Q Consensus 329 ~~-~g~~~~~~v~~~--~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t--g~-----~v~~l~~~~~~v~~~~~~~~~~~l 398 (453)
++ .||. ..|.++ .|.+..|+++|+|. ++-||.-++ |- ++..+.++..+-....+++++..+
T Consensus 261 all~GHe--DWV~sv~W~p~~~~LLSASaDk-------smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 261 ALLMGHE--DWVYSVWWHPEGLDLLSASADK-------SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred hhhcCcc--cceEEEEEccchhhheecccCc-------ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 11 2554 455665 45566789999999 999997654 42 222233233345667778888766
Q ss_pred EEEeC-CeEEEEECCC-CeEE--EEecccCCceEE--EEecCCCEEEEE-eCCcEEEE
Q 046773 399 LMCVE-GVIRVWEVEG-GEYM--YSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 399 ls~s~-~tIrlWD~~t-G~~l--~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklW 449 (453)
++-+- |-.++|-.+. +.+. -.+.||.+. |. +..|.|.+|.|. .|.|-||+
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~-V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG-VKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred EEecccCcEEEEeccCccceeecccccccccc-ceeeeecCCCCEEEEeccccceeee
Confidence 65554 9999998443 3333 345799999 88 557999999888 99999985
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=151.51 Aligned_cols=206 Identities=14% Similarity=0.088 Sum_probs=143.5
Q ss_pred EecCCEEEEEeCCCcEEEEECCC---CeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEeecCC-
Q 046773 151 TLSDLYLACGFADGAVRLFDLTT---RLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVIDDVA- 223 (453)
Q Consensus 151 afs~~~LaSGS~D~TIrlWD~~t---g~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~~~~g- 223 (453)
+|..++|||++..+-|-+||+.- .+.+..|..|. ++|..+.|+ +.+|+|||.|++||.||+...-
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~--------Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE--------RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccchhhhHhhhhc--------cceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 67778999999999999999987 45566777664 477888876 6799999999999999997622
Q ss_pred cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc
Q 046773 224 NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 224 ~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
..++++-...+. -|.|+|--.. ..+++...+.+++||++.-.... .++..|.++|.++-++
T Consensus 169 ~~t~~~nSESiR----DV~fsp~~~~--~F~s~~dsG~lqlWDlRqp~r~~-------------~k~~AH~GpV~c~nwh 229 (839)
T KOG0269|consen 169 KSTFRSNSESIR----DVKFSPGYGN--KFASIHDSGYLQLWDLRQPDRCE-------------KKLTAHNGPVLCLNWH 229 (839)
T ss_pred cccccccchhhh----ceeeccCCCc--eEEEecCCceEEEeeccCchhHH-------------HHhhcccCceEEEeec
Confidence 455554333322 2889987543 47888999999999998755211 3578999999999999
Q ss_pred CCceEEEE--cCCcEEEEECCCCce--EEEEeeccCCeEEEEEEecCC---EEEEEeCCCccccCcceEEEEEcCCC-ee
Q 046773 304 SHESAVAC--TSSRVITFDLRNQGM--VLGERGYGRGLYVTSVDVNAE---AYIVVENRELENQNRRLAIVRRVDTF-EE 375 (453)
Q Consensus 304 ~~~~~vas--~d~tIrlWDl~t~~~--~~~~~g~~~~~~v~~~~~~g~---~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~ 375 (453)
|+...+|+ -|++|||||+.+++. +++. ++ ...|..+-+.+. .|++.|.-. |..|+|||+.-+ -+
T Consensus 230 Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nT-iapv~rVkWRP~~~~hLAtcsmv~-----dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 230 PNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NT-IAPVGRVKWRPARSYHLATCSMVV-----DTSVHVWDVRRPYIP 301 (839)
T ss_pred CCCceeeecCCCccEEEEeccCCCccceeEE--ee-cceeeeeeeccCccchhhhhhccc-----cceEEEEeecccccc
Confidence 98866664 478999999997532 2222 11 123455554443 456655544 448999998753 34
Q ss_pred EEEEEecCCCeeEEEE
Q 046773 376 VCRFSLRADRNVNVMG 391 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~ 391 (453)
-.++.-|.+-+..+++
T Consensus 302 ~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAW 317 (839)
T ss_pred ceeeeccCccccceec
Confidence 4555556554444443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=149.35 Aligned_cols=236 Identities=16% Similarity=0.188 Sum_probs=158.0
Q ss_pred eEEEEEEcC--CeEEEEeCCCCEEEEEeec---C--C----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeE
Q 046773 194 AVSGIIITD--SQLIFATLDGDIHVAVIDD---V--A----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAF 262 (453)
Q Consensus 194 ~V~~i~f~g--~~LasgS~D~tIkvWd~~~---~--g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tI 262 (453)
.+++++|.+ .-|++||-|++|++|+++. . . +-++++|.+.|. .|...+.++. ++||+.|++|
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl----~v~v~~n~~~---~ysgg~Dg~I 368 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVL----CVVVPSNGEH---CYSGGIDGTI 368 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceE----EEEecCCceE---EEeeccCcee
Confidence 455666653 4699999999999999932 1 1 467788988875 4788889886 7899999999
Q ss_pred EEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeEEEEcC--CceEEEEcCCcEEEEECCCCce-EEEE-eeccCCe
Q 046773 263 HIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS--HESAVACTSSRVITFDLRNQGM-VLGE-RGYGRGL 337 (453)
Q Consensus 263 rvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~--~~~~vas~d~tIrlWDl~t~~~-~~~~-~g~~~~~ 337 (453)
|.|++.... -+..+ ++... -.++.||++.|..+++++ +.+++.|.|+|+|+|+...... .... ..++
T Consensus 369 ~~w~~p~n~dp~ds~---dp~vl--~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g--- 440 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSY---DPSVL--SGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG--- 440 (577)
T ss_pred eeeccCCCCCccccc---Ccchh--ccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccC---
Confidence 999876332 11110 11111 246889999999999985 4456667799999999876432 1211 1121
Q ss_pred EEEEEEecCCEEEEEeCCCccccCcceEE---EEEcCCCeeEEEEEecC-------CCeeEEEEeeCCCeEEEEeC-CeE
Q 046773 338 YVTSVDVNAEAYIVVENRELENQNRRLAI---VRRVDTFEEVCRFSLRA-------DRNVNVMGCMNQGYALMCVE-GVI 406 (453)
Q Consensus 338 ~v~~~~~~g~~l~s~s~dg~~~~~~~~i~---Iw~~~tg~~v~~l~~~~-------~~v~~~~~~~~~~~lls~s~-~tI 406 (453)
+-.+|++.....+....+. ..+ +.+.++.+.+..+.... ..+..++.++.....+++-. ++|
T Consensus 441 ~Plsvd~~ss~~a~~~~s~-------~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~I 513 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASF-------RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSI 513 (577)
T ss_pred CcceEeeccchhHhhhhhc-------ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCce
Confidence 2356665554432222222 222 22333443333332221 22334566666666565555 999
Q ss_pred EEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 407 RVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 407 rlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|+.|..+|+.++....|... |. ++.|+|.+|.++ .|+.|++|.+.
T Consensus 514 r~~dn~~~~~l~s~~a~~~s-vtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 514 RFFDNKTGKILHSMVAHKDS-VTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred ecccccccccchheeeccce-ecceeecCCCceEEeecCCceeehhhcc
Confidence 99999999999999999888 87 677999999999 99999999874
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-13 Score=137.35 Aligned_cols=270 Identities=10% Similarity=0.127 Sum_probs=185.0
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe--EEEEecCCCCCccccccceEEEEEEcCC-eEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL--HVRTFRPQHSDRLGQFSRAVSGIIITDS-QLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--~~~tl~gh~~~~~~~~s~~V~~i~f~g~-~LasgS~D~tIkvWd~~~ 221 (453)
|+|++|-+ ..|.++++|+++||+-+..-. .++.+. - ..+. -.-..|+..|. .+++++.-.-...||+.+
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~--l-~~fP---i~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH--L-EKFP---IQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee--e-ccCc---cceeeecCCCceEEEecccceEEEEeeccc
Confidence 89999987 589999999999999985332 333331 1 1111 11233555677 788888888899999987
Q ss_pred CC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 222 VA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 222 ~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
.- +.+..++....+ .....|||+++ |+..+..+-|.|-...|++.+.. ....+.|.
T Consensus 290 ak~~k~~~~~g~e~~~~---e~FeVShd~~f---ia~~G~~G~I~lLhakT~eli~s---------------~KieG~v~ 348 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSM---ERFEVSHDSNF---IAIAGNNGHIHLLHAKTKELITS---------------FKIEGVVS 348 (514)
T ss_pred cccccccCCCCcccchh---heeEecCCCCe---EEEcccCceEEeehhhhhhhhhe---------------eeeccEEe
Confidence 21 233333331111 13567899986 66778889999999989884311 01235577
Q ss_pred EEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEe--eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC--
Q 046773 299 RVRVTSHE--SAVACTSSRVITFDLRNQGMVLGER--GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-- 372 (453)
Q Consensus 299 ~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~--g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-- 372 (453)
.+.|+.++ ++++++++.|-+||+++..|+++.+ |-.++ ...|.++++..+|+||..| .+-|++-++
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~g-ts~~~S~ng~ylA~GS~~G-------iVNIYd~~s~~ 420 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHG-TSLCISLNGSYLATGSDSG-------IVNIYDGNSCF 420 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccce-eeeeecCCCceEEeccCcc-------eEEEeccchhh
Confidence 78888665 3444567899999999999998863 32222 2356778899999999999 999998653
Q ss_pred ----CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC---CeEEEEECCCCeEEEEeccc---CCceEE--EEecCCCEEEE
Q 046773 373 ----FEEVCRFSLRADRNVNVMGCMNQGYALMCVE---GVIRVWEVEGGEYMYSFRER---IGEEVI--AFVGDDRHVAA 440 (453)
Q Consensus 373 ----g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~---~tIrlWD~~tG~~l~tL~gh---~~~~V~--a~s~d~~~las 440 (453)
++++.++.--...|.++.|+++...|+.||. +.+||=-+.+-.-...++.. -+. |+ +|+|.+-++|-
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~-vtc~aFSP~sG~lAv 499 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGH-VTCMAFSPNSGYLAV 499 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccc-eEEEEecCCCceEEe
Confidence 3444443222234777888888887777775 79999888765444444322 233 55 78999999999
Q ss_pred E-eCCcEEEEecC
Q 046773 441 S-CGTNIHLWDFG 452 (453)
Q Consensus 441 g-~D~~IklWDl~ 452 (453)
| .++.|.||.+.
T Consensus 500 GNe~grv~l~kL~ 512 (514)
T KOG2055|consen 500 GNEAGRVHLFKLH 512 (514)
T ss_pred ecCCCceeeEeec
Confidence 9 99999999873
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=136.08 Aligned_cols=205 Identities=13% Similarity=0.113 Sum_probs=148.4
Q ss_pred ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 225 ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 225 ~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
.+.++|++.+.+ ++++|-... .+||||.|.+|+||.+-.+-+.. .++.| -..|.+|.-.|+-|+.+|
T Consensus 75 P~v~GHt~~vLD----i~w~PfnD~--vIASgSeD~~v~vW~IPe~~l~~--~ltep-----vv~L~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 75 PLVCGHTAPVLD----IDWCPFNDC--VIASGSEDTKVMVWQIPENGLTR--DLTEP-----VVELYGHQRRVGLVQWHP 141 (472)
T ss_pred CCccCccccccc----cccCccCCc--eeecCCCCceEEEEECCCccccc--Ccccc-----eEEEeecceeEEEEeecc
Confidence 456678777643 677776553 48999999999999997655321 12222 146899999999999987
Q ss_pred Cc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEe
Q 046773 305 HE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSL 381 (453)
Q Consensus 305 ~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~ 381 (453)
.- +++++.|.+|+|||+.||..+.++. |...++..+|+.+|..+++.+.|. .|||||..+++.+.+-..
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDK-------kvRv~dpr~~~~v~e~~~ 213 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK-------KVRVIDPRRGTVVSEGVA 213 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccc-------eeEEEcCCCCcEeeeccc
Confidence 43 5677889999999999998777764 666666667778899999999988 999999999998887766
Q ss_pred cCCC-eeEEEEeeCCCeEEEEe----C-CeEEEEECCC---CeEEEEecccCCceEE-EEecCCCEE-EEE-eCCcEEEE
Q 046773 382 RADR-NVNVMGCMNQGYALMCV----E-GVIRVWEVEG---GEYMYSFRERIGEEVI-AFVGDDRHV-AAS-CGTNIHLW 449 (453)
Q Consensus 382 ~~~~-v~~~~~~~~~~~lls~s----~-~tIrlWD~~t---G~~l~tL~gh~~~~V~-a~s~d~~~l-asg-~D~~IklW 449 (453)
|... -..++|-.++. +++.+ + ..+-|||... .--+++|..-.+. +. -+.+|..+| .+| -|+.||-+
T Consensus 214 heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv-l~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 214 HEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV-LLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred ccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCce-EEeeecCCCCEEEEEecCCcceEEE
Confidence 6533 33455666666 44432 2 7999998765 3345666544444 33 345788876 578 99999998
Q ss_pred ecC
Q 046773 450 DFG 452 (453)
Q Consensus 450 Dl~ 452 (453)
.+.
T Consensus 292 Eit 294 (472)
T KOG0303|consen 292 EIT 294 (472)
T ss_pred Eec
Confidence 764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=144.31 Aligned_cols=231 Identities=13% Similarity=0.175 Sum_probs=162.6
Q ss_pred eEEEEEEcC--CeEEEEeCCCCEEEEEeecCCcceEEeeecceecCc--eEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 194 AVSGIIITD--SQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDG--VLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f~g--~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~--~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
-|-++.+++ +.+.|| --+.|||||+..+|-..-..+..-...+. ...-..|||+. |.+|+.-.|+.|||+.+
T Consensus 421 vVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrt---LivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRT---LIVGGEASTLSIWDLAA 496 (705)
T ss_pred EEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCce---EEeccccceeeeeeccC
Confidence 355566663 345554 56789999998765211111111111111 13567899996 88999999999999988
Q ss_pred Cc-EEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC
Q 046773 270 EE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA 346 (453)
Q Consensus 270 g~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g 346 (453)
.. .+. ..|+.-.-.+.+++++|+.. ++.|+|+.|+||||.+...++++.||+.+..+..++.+|
T Consensus 497 pTprik-------------aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG 563 (705)
T KOG0639|consen 497 PTPRIK-------------AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG 563 (705)
T ss_pred CCcchh-------------hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC
Confidence 66 211 01222223456678888874 455789999999999876667778998888777777889
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCC
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIG 425 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~ 425 (453)
.+|=++.-|. ++|-||..++..++...|. +.|.++-.||++.+++.+=. +.|.|--+ ++...|.|.-|..
T Consensus 564 tklWTGGlDn-------tvRcWDlregrqlqqhdF~-SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheS 634 (705)
T KOG0639|consen 564 TKLWTGGLDN-------TVRCWDLREGRQLQQHDFS-SQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHES 634 (705)
T ss_pred ceeecCCCcc-------ceeehhhhhhhhhhhhhhh-hhheecccCCCccceeeecccCcEEEEec-CCccceeeccccc
Confidence 9999999888 9999999998776665554 34778888999999887766 66665544 3555666766666
Q ss_pred ceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 426 EEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 426 ~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
. |- .|++-|++.||. .|+-+..|..
T Consensus 635 c-VLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 635 C-VLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred E-EEEEEecccCceeeecCchhhhhhccC
Confidence 5 66 578999999987 9999888864
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=136.67 Aligned_cols=150 Identities=15% Similarity=0.224 Sum_probs=111.9
Q ss_pred ceEEEEeCC--CceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeEEEEcCCc--e-EEEE
Q 046773 238 GVLIDFTGC--SRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--S-AVAC 311 (453)
Q Consensus 238 ~~~v~Fs~d--g~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~-~vas 311 (453)
+..++|||- |+ |+||..-+.|++|...+|. .+- . ..+.+|+..|-.++.||.. . +++|
T Consensus 214 Gy~LdWSp~~~g~----LlsGDc~~~I~lw~~~~g~W~vd------~------~Pf~gH~~SVEDLqWSptE~~vfaScS 277 (440)
T KOG0302|consen 214 GYGLDWSPIKTGR----LLSGDCVKGIHLWEPSTGSWKVD------Q------RPFTGHTKSVEDLQWSPTEDGVFASCS 277 (440)
T ss_pred ceeeecccccccc----cccCccccceEeeeeccCceeec------C------ccccccccchhhhccCCccCceEEeee
Confidence 345888883 44 6788778899999999987 221 0 2467899999999998754 3 4445
Q ss_pred cCCcEEEEECCCC---ceEEEEeeccCCeEEEEEEecC--CEEEEEeCCCccccCcceEEEEEcCC---CeeEEEEEecC
Q 046773 312 TSSRVITFDLRNQ---GMVLGERGYGRGLYVTSVDVNA--EAYIVVENRELENQNRRLAIVRRVDT---FEEVCRFSLRA 383 (453)
Q Consensus 312 ~d~tIrlWDl~t~---~~~~~~~g~~~~~~v~~~~~~g--~~l~s~s~dg~~~~~~~~i~Iw~~~t---g~~v~~l~~~~ 383 (453)
.|++|||||++.+ .|+.+ ..|... |+.+++++ ..|++++.+| +++|||+.+ ++++.+|+.|.
T Consensus 278 ~DgsIrIWDiRs~~~~~~~~~-kAh~sD--VNVISWnr~~~lLasG~DdG-------t~~iwDLR~~~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 278 CDGSIRIWDIRSGPKKAAVST-KAHNSD--VNVISWNRREPLLASGGDDG-------TLSIWDLRQFKSGQPVATFKYHK 347 (440)
T ss_pred cCceEEEEEecCCCccceeEe-eccCCc--eeeEEccCCcceeeecCCCc-------eEEEEEhhhccCCCcceeEEecc
Confidence 6899999999998 45444 445444 45555554 3688888899 999999875 57889999999
Q ss_pred CCeeEEEEeeCCCeEEEEeC--CeEEEEECCC
Q 046773 384 DRNVNVMGCMNQGYALMCVE--GVIRVWEVEG 413 (453)
Q Consensus 384 ~~v~~~~~~~~~~~lls~s~--~tIrlWD~~t 413 (453)
..+.++.++|.....+++++ ..|-|||+..
T Consensus 348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 348 APITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 88999999997655554443 9999999964
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-13 Score=144.23 Aligned_cols=209 Identities=13% Similarity=0.156 Sum_probs=154.7
Q ss_pred eEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 145 LTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 145 v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
..|+|++-...++++||.|+||.++....++.=..|. +|.-.++.++|+ |..+|.||.|-.|||=+....
T Consensus 57 ~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~--------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 57 ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILA--------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred ceeEEEeecccceEEeeccceEEEeeCCCCCccceee--------eeeccceEEEEecCCcEEEeecCceeEEEEecccc
Confidence 3388999988899999999999999998887421111 122245667776 558999999999999988763
Q ss_pred C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccC---Ccceeeeeeeeeecccee
Q 046773 223 A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTD---HNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 223 g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~---~~~v~~w~~l~~h~~~v~ 298 (453)
. ...+++|.+.|. .|.|+|++.+ ||+.+.|++|+|||+.++.+.. ++++ .+.. ..+..++
T Consensus 129 s~~~~lrgh~apVl----~l~~~p~~~f---LAvss~dG~v~iw~~~~~~~~~--tl~~v~k~n~~-------~~s~i~~ 192 (933)
T KOG1274|consen 129 SQEKVLRGHDAPVL----QLSYDPKGNF---LAVSSCDGKVQIWDLQDGILSK--TLTGVDKDNEF-------ILSRICT 192 (933)
T ss_pred chheeecccCCcee----eeeEcCCCCE---EEEEecCceEEEEEcccchhhh--hcccCCccccc-------cccceee
Confidence 3 677888988775 4999999997 8999999999999999988321 1111 1100 1134567
Q ss_pred EEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE--eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC--
Q 046773 299 RVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE--RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-- 372 (453)
Q Consensus 299 ~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~--~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-- 372 (453)
.++++|++ +++.+.|++|++++..+......+ ..+.....+..++|.|.+||+++.++ .|.|||+++
T Consensus 193 ~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g-------~I~vWnv~t~~ 265 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG-------QILVWNVDTHE 265 (933)
T ss_pred eeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCC-------cEEEEecccch
Confidence 78899874 566789999999999987655554 23333466778999999999999999 999999995
Q ss_pred ----CeeEEEEEecCC
Q 046773 373 ----FEEVCRFSLRAD 384 (453)
Q Consensus 373 ----g~~v~~l~~~~~ 384 (453)
...|+.+.++++
T Consensus 266 ~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 266 RHEFKRAVCCEAWKPN 281 (933)
T ss_pred hccccceeEEEecCCC
Confidence 344555555553
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-12 Score=135.35 Aligned_cols=226 Identities=11% Similarity=0.139 Sum_probs=156.9
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~ 268 (453)
.|.++||+ ...||-+=.|+.|.+||+.. + ...+.++... .-..++|++.+| |+|.+.+++|.-||+.
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~-~w~~~~vi~g~~dr---sIE~L~W~e~~R----LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSN-NWFLEPVIHGPEDR---SIESLAWAEGGR----LFSSGLSGSITEWDLH 98 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCC-CceeeEEEecCCCC---ceeeEEEccCCe----EEeecCCceEEEEecc
Confidence 56778885 56799999999999999987 4 2333333321 112489998777 8899999999999999
Q ss_pred CCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEE--EEe
Q 046773 269 AEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTS--VDV 344 (453)
Q Consensus 269 tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~--~~~ 344 (453)
+++...- +....+.+.+++++|.+ ++++|.|+.+...+..++........-.+...+.+ +++
T Consensus 99 ~lk~~~~--------------~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~ 164 (691)
T KOG2048|consen 99 TLKQKYN--------------IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP 164 (691)
T ss_pred cCceeEE--------------ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC
Confidence 9884321 12233677888888754 56778889777778777643322211122234455 455
Q ss_pred cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE-----EecC-CC--eeEEEEeeCCCeEEEEeC-CeEEEEECCCCe
Q 046773 345 NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF-----SLRA-DR--NVNVMGCMNQGYALMCVE-GVIRVWEVEGGE 415 (453)
Q Consensus 345 ~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-----~~~~-~~--v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~ 415 (453)
++.+++.||.|| .|+|||+.+++.+... .++. +. |-++.+- -++.++++.+ |+|+.||...|.
T Consensus 165 ~~~~i~~Gs~Dg-------~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 165 TGTKIAGGSIDG-------VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred CccEEEecccCc-------eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcc
Confidence 666789999999 9999999999877622 2222 11 3344444 3445555555 999999999999
Q ss_pred EEEEecccCCceEEEE--ecCCCEEEEE-eCCcEEEEe
Q 046773 416 YMYSFRERIGEEVIAF--VGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 416 ~l~tL~gh~~~~V~a~--s~d~~~lasg-~D~~IklWD 450 (453)
.++.+.-|... |.++ ++++.++.++ .|++|..+.
T Consensus 237 LiqS~~~h~ad-Vl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 237 LIQSHSCHDAD-VLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred hhhhhhhhhcc-eeEEEEcCCCCeEEEccCCCceEEEE
Confidence 99999999888 8855 4676788887 888876543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-13 Score=130.65 Aligned_cols=232 Identities=9% Similarity=0.132 Sum_probs=158.9
Q ss_pred EEcCCeEEEEeCCCCEEEEEeec-------CCc------ceEEeeecceecCce---E-EEEeCCCceeeEEEEeeCCCe
Q 046773 199 IITDSQLIFATLDGDIHVAVIDD-------VAN------ETRTAHFGSVMDDGV---L-IDFTGCSRYWVGLYAGLAGRA 261 (453)
Q Consensus 199 ~f~g~~LasgS~D~tIkvWd~~~-------~g~------~~~~~~~~~v~~~~~---~-v~Fs~dg~~~~~LaSgS~D~t 261 (453)
++||.-|.+-|.|.++++|++-. .+. ..++...+..+-+-+ . -.-.|+..+ .|+.|.|.-
T Consensus 58 SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l---~a~ssr~~P 134 (406)
T KOG2919|consen 58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL---FAVSSRDQP 134 (406)
T ss_pred CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccce---eeeccccCc
Confidence 46788889999999999999743 110 111111121111000 0 011344332 567789999
Q ss_pred EEEeeCCCCcEEecccccCCcceeeeeeeeeeccc---eeEEEEcCCce-EEEEcCCcEEEEEC-CCCc-eEE-EE--e-
Q 046773 262 FHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF---VGRVRVTSHES-AVACTSSRVITFDL-RNQG-MVL-GE--R- 331 (453)
Q Consensus 262 IrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~---v~~v~~s~~~~-~vas~d~tIrlWDl-~t~~-~~~-~~--~- 331 (453)
|+|||.-||+...- .. ...|-+. .-+++|+|++. +.|+...+||++|+ ++|. |.. +. .
T Consensus 135 Ih~wdaftG~lraS--------y~----~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 135 IHLWDAFTGKLRAS--------YR----AYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred eeeeeccccccccc--------hh----hhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcc
Confidence 99999999983110 00 0122222 24689999885 55666689999999 5553 221 11 1
Q ss_pred eccCCeEEEEEEecC---CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeE
Q 046773 332 GYGRGLYVTSVDVNA---EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVI 406 (453)
Q Consensus 332 g~~~~~~v~~~~~~g---~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tI 406 (453)
-.++...+.++++++ ..++.+|... .+-|+..+...++..+-+|..+|..+.++++|..+.+++- -.|
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q-------~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQ-------RVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccc-------eeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 122334455666554 3678888888 8889999999999998899999999999999999988876 789
Q ss_pred EEEECCC-CeEEEEecccCCc---eEE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 407 RVWEVEG-GEYMYSFRERIGE---EVI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 407 rlWD~~t-G~~l~tL~gh~~~---~V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
-.||+.. +..++.|.+|.+. +|. .+.|++++|||| .||.|++||+.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 9999985 6778999998763 344 677999999999 99999999985
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-13 Score=136.16 Aligned_cols=206 Identities=17% Similarity=0.158 Sum_probs=155.3
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEee
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAH 230 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~ 230 (453)
.|+++|+..++|||||+....|.|.|++|.. .|.++-+. +..||++|..|.|.|-.+.+ + ..++.--
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~s--------tvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~ 162 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQS--------TVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTID 162 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcc--------eeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecC
Confidence 6999999999999999998889999998764 68888775 67899999999999988877 4 2223222
Q ss_pred ecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-e--
Q 046773 231 FGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-S-- 307 (453)
Q Consensus 231 ~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~-- 307 (453)
.+..+ .+|.|+|..|. .|.++|.+++|.|||+....-+. +-+..|..|...|+|+|-. .
T Consensus 163 sgqsv---Rll~ys~skr~--lL~~asd~G~VtlwDv~g~sp~~-------------~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 163 SGQSV---RLLRYSPSKRF--LLSIASDKGAVTLWDVQGMSPIF-------------HASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred CCCeE---EEeecccccce--eeEeeccCCeEEEEeccCCCccc-------------chhhhccCCcCcceecCCccceE
Confidence 23322 26899999887 47889999999999996655211 3466899999999999744 2
Q ss_pred EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCCCe
Q 046773 308 AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRN 386 (453)
Q Consensus 308 ~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v 386 (453)
++.+.|..|-++|++......++.. .+.....+|.++|..|+.+++.| .+--+|+. +.+++..+..|...|
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G-------~~i~YD~R~~k~Pv~v~sah~~sV 296 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKG-------ELIAYDMRSTKAPVAVRSAHDASV 296 (673)
T ss_pred EEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCc-------eEEEEecccCCCCceEeeecccce
Confidence 3335688999999997643333321 23344577888899999999999 67777776 467788888888888
Q ss_pred eEEEEeeCC
Q 046773 387 VNVMGCMNQ 395 (453)
Q Consensus 387 ~~~~~~~~~ 395 (453)
..++|-+..
T Consensus 297 t~vafq~s~ 305 (673)
T KOG4378|consen 297 TRVAFQPSP 305 (673)
T ss_pred eEEEeeecc
Confidence 888886654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=140.38 Aligned_cols=244 Identities=18% Similarity=0.184 Sum_probs=158.7
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCC--------CeEEEEecCCCCCccccccceEEEEEE--cCCeE
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTT--------RLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQL 205 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~t--------g~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~L 205 (453)
-|. |. ++.++|-+ ..|++++.|++|++|+++. -+.+.||++|.+ .|-+++. .+..+
T Consensus 292 s~~--d~--ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g--------PVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 292 SHD--DC--IRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG--------PVLCVVVPSNGEHC 359 (577)
T ss_pred cch--hh--hhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC--------ceEEEEecCCceEE
Confidence 476 55 56777754 6899999999999999922 246889999876 3555554 47789
Q ss_pred EEEeCCCCEEEEEeec-------C----CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE--
Q 046773 206 IFATLDGDIHVAVIDD-------V----ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV-- 272 (453)
Q Consensus 206 asgS~D~tIkvWd~~~-------~----g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~-- 272 (453)
.||+.|++|+.|++-. + ...++.+|++.+. .+++|+.-.. |.|+|.|+|+|+|+......
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw----~l~~s~~~~~---Llscs~DgTvr~w~~~~~~~~~ 432 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVW----LLALSSTKDR---LLSCSSDGTVRLWEPTEESPCT 432 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceecccccee----eeeecccccc---eeeecCCceEEeeccCCcCccc
Confidence 9999999999996532 1 1356677776654 4788887665 88999999999999866553
Q ss_pred EecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEE---EEECCCCceEEEEe-----ec---cCCeEEEE
Q 046773 273 FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVI---TFDLRNQGMVLGER-----GY---GRGLYVTS 341 (453)
Q Consensus 273 ~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIr---lWDl~t~~~~~~~~-----g~---~~~~~v~~ 341 (453)
|.. + ..| ..-.+|.+.....+....+.+.+ +.|+++...++.+. +. .+-+.|.+
T Consensus 433 f~~-----~---------~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs 497 (577)
T KOG0642|consen 433 FGE-----P---------KEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS 497 (577)
T ss_pred cCC-----c---------ccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe
Confidence 311 0 011 01112222211111111122222 33334333322220 11 01111111
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
.+.....+++--+. .|++.|..++..+..+..|.+.+.++++.+++.++++++. +.|++|.+..-.|....
T Consensus 498 -~~~~~~~~~~hed~-------~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 498 -HPTADITFTAHEDR-------SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred -cCCCCeeEecccCC-------ceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 23334445554555 9999999999999999999999999999999999999887 99999999888887665
Q ss_pred ccc
Q 046773 421 RER 423 (453)
Q Consensus 421 ~gh 423 (453)
..|
T Consensus 570 ~~~ 572 (577)
T KOG0642|consen 570 TAH 572 (577)
T ss_pred ccc
Confidence 544
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=126.15 Aligned_cols=180 Identities=9% Similarity=0.103 Sum_probs=137.9
Q ss_pred CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC----ceEEEEcCCcEEEEEC
Q 046773 246 CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH----ESAVACTSSRVITFDL 321 (453)
Q Consensus 246 dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~----~~~vas~d~tIrlWDl 321 (453)
+|++ +||||.|-||+|+|+.+...+ ..|-.|++.++++.|.+. .+++++.|+.|.+||.
T Consensus 52 s~~~---~aSGssDetI~IYDm~k~~ql--------------g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 52 SGPY---VASGSSDETIHIYDMRKRKQL--------------GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred ccee---EeccCCCCcEEEEeccchhhh--------------cceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 4554 899999999999999886632 235578899999999854 3677778899999999
Q ss_pred CCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE
Q 046773 322 RNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 322 ~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~ 401 (453)
..-.++..+.+|.+++.-.++.|++..-++.+.|+ .++.|++-+|..-..+.+... -..+.|++.|.+.+..
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~-------~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQ-------VLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVS 186 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCCc-------eeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEE
Confidence 98888888888988876677889998888889999 999999998865444433322 2336788888887777
Q ss_pred eCCeEEEEECCCCeEEEEecccCCceEEEEe-cCCCEEEEE-eCCcEEEEecC
Q 046773 402 VEGVIRVWEVEGGEYMYSFRERIGEEVIAFV-GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 402 s~~tIrlWD~~tG~~l~tL~gh~~~~V~a~s-~d~~~lasg-~D~~IklWDl~ 452 (453)
..+.|-||.+.+......+..... +.++- -++..|++| .|+.|++||..
T Consensus 187 ~~~~i~i~q~d~A~v~~~i~~~~r--~l~~~~l~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASVFREIENPKR--ILCATFLDGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred eccEEEEEecccHhHhhhhhcccc--ceeeeecCCceEEEecCCceEEEeccC
Confidence 778899999998877666643322 23333 366788888 99999999964
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.2e-12 Score=124.70 Aligned_cols=272 Identities=14% Similarity=0.153 Sum_probs=159.3
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCeE---------EEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCC
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRLH---------VRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDG 212 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~---------~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~ 212 (453)
|+.+.|-+ .+||||+.|..||||-+++++. +-+|..|+ ++|.++-|+ |++||||+.++
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~--------~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT--------RAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCc--------ceeEEEEEcCCcCeeeecCCCc
Confidence 67777754 4899999999999999876642 33455544 478888886 56999999999
Q ss_pred CEEEEEeecCC-----------------cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEec
Q 046773 213 DIHVAVIDDVA-----------------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVG 275 (453)
Q Consensus 213 tIkvWd~~~~g-----------------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g 275 (453)
.|.+|-..... ...+++|...+. -++.+||+.+ |++||.|+++++||+..|+...
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy----dL~Ws~d~~~---l~s~s~dns~~l~Dv~~G~l~~- 159 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIY----DLAWSPDSNF---LVSGSVDNSVRLWDVHAGQLLA- 159 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchh----hhhccCCCce---eeeeeccceEEEEEeccceeEe-
Confidence 99999765200 122334444433 3789999986 8899999999999999999653
Q ss_pred ccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCceEEEE--------eeccCCeEE------
Q 046773 276 GDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQGMVLGE--------RGYGRGLYV------ 339 (453)
Q Consensus 276 ~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~~~~~--------~g~~~~~~v------ 339 (453)
++-+|...|.-|+.+|-+..++ |.|...+..++...+.+... .++.....+
T Consensus 160 -------------~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhD 226 (434)
T KOG1009|consen 160 -------------ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHD 226 (434)
T ss_pred -------------eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeec
Confidence 2445666777777777655444 34443444444332221110 011111111
Q ss_pred ---------EEEEecCCEEEEEeCCCcc--ccCcceEEEEEcC-CCeeEEE-----------------EEecCCCeeEEE
Q 046773 340 ---------TSVDVNAEAYIVVENRELE--NQNRRLAIVRRVD-TFEEVCR-----------------FSLRADRNVNVM 390 (453)
Q Consensus 340 ---------~~~~~~g~~l~s~s~dg~~--~~~~~~i~Iw~~~-tg~~v~~-----------------l~~~~~~v~~~~ 390 (453)
.+|+|+|..|++.+.--.. +-+.++..+.+-. ..+++.. +.+.|-......
T Consensus 227 eTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~ 306 (434)
T KOG1009|consen 227 ETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFL 306 (434)
T ss_pred CchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccc
Confidence 3566777766654321100 0001222333211 0111111 111121111112
Q ss_pred EeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc-cCCceEE--EEecCCCEEEEE-eCCcEEE
Q 046773 391 GCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE-RIGEEVI--AFVGDDRHVAAS-CGTNIHL 448 (453)
Q Consensus 391 ~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g-h~~~~V~--a~s~d~~~lasg-~D~~Ikl 448 (453)
+..+.+.+.+.+. +.|.|+|.++-+.+....+ |-.. ++ ++++||..|+.+ .||-.-+
T Consensus 307 ~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~-iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 307 FVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSA-ITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cccccceEEEEeecceEEEeccccccceEEEeeeeeee-ecceeecCCCcEEEEeccCCceEE
Confidence 3344555555565 9999999999877766644 3333 55 778999987655 8885443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-12 Score=122.32 Aligned_cols=270 Identities=14% Similarity=0.178 Sum_probs=169.9
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~ 222 (453)
..|++||. .+||.|..||.|-|||+.|..--++|.+|.. .|.+++. +|++|+|+|.|..|++||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~--------pi~sl~WS~dgr~LltsS~D~si~lwDl~~- 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVR--------PITSLCWSRDGRKLLTSSRDWSIKLWDLLK- 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccc--------ceeEEEecCCCCEeeeecCCceeEEEeccC-
Confidence 58999994 8999999999999999999998899988754 6888886 589999999999999999987
Q ss_pred CcceEEeee-cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc--EEecccccCCcceeeeeeeeeeccceeE
Q 046773 223 ANETRTAHF-GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 223 g~~~~~~~~-~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
|-...+..- ..|. ...|+|.-+-. .+|+ =.+..-.|=++..+. ++. ..++.. | ...-.+
T Consensus 97 gs~l~rirf~spv~----~~q~hp~k~n~-~va~-~~~~sp~vi~~s~~~h~~Lp---~d~d~d------l---n~sas~ 158 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVW----GAQWHPRKRNK-CVAT-IMEESPVVIDFSDPKHSVLP---KDDDGD------L---NSSASH 158 (405)
T ss_pred CCceeEEEccCccc----eeeeccccCCe-EEEE-EecCCcEEEEecCCceeecc---CCCccc------c---cccccc
Confidence 511111111 1111 13455543320 1222 123333344444332 211 011110 0 001112
Q ss_pred EEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeecc-CCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC----
Q 046773 300 VRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYG-RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT---- 372 (453)
Q Consensus 300 v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~-~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t---- 372 (453)
+-|++++ ++++.+.+.+-+.|.+|-+|+.-.+-.+ +++.-.-|+..|+.++.-+.|. +||.++...
T Consensus 159 ~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR-------vIR~ye~~di~~~ 231 (405)
T KOG1273|consen 159 GVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR-------VIRTYEISDIDDE 231 (405)
T ss_pred ccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc-------eEEEEehhhhccc
Confidence 3455444 3444556889999999988875542222 3333345778899999888888 999987651
Q ss_pred C--eeE---EEEE---ecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEE
Q 046773 373 F--EEV---CRFS---LRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAA 440 (453)
Q Consensus 373 g--~~v---~~l~---~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~las 440 (453)
| .++ +.++ -...| ....|+.+|.|+.+++. ..+.||...+|..++.|.|..|.... ...|-...|+|
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~W-k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQW-KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIAS 310 (405)
T ss_pred CccCCcChhHHHHHHHhhhhh-hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeee
Confidence 1 111 1110 00011 23567778899887776 89999999999999999998865233 34465556776
Q ss_pred EeCCcEEEEec
Q 046773 441 SCGTNIHLWDF 451 (453)
Q Consensus 441 g~D~~IklWDl 451 (453)
-.-|+|+||..
T Consensus 311 i~sg~v~iw~~ 321 (405)
T KOG1273|consen 311 IASGVVYIWAV 321 (405)
T ss_pred ccCCceEEEEe
Confidence 57789999964
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.2e-13 Score=130.62 Aligned_cols=195 Identities=12% Similarity=0.081 Sum_probs=131.2
Q ss_pred CCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeE-------EEEecCCCCCccccccceEEEEEEcC---Ce
Q 046773 138 DVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLH-------VRTFRPQHSDRLGQFSRAVSGIIITD---SQ 204 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~-------~~tl~gh~~~~~~~~s~~V~~i~f~g---~~ 204 (453)
||+.| |..+++++ ..|||||.|.||+||++..+-. +..|.||.. .|.-++..+ ..
T Consensus 79 GHt~~----vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r--------rVg~V~wHPtA~NV 146 (472)
T KOG0303|consen 79 GHTAP----VLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR--------RVGLVQWHPTAPNV 146 (472)
T ss_pred Ccccc----ccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecce--------eEEEEeecccchhh
Confidence 89977 77888775 5899999999999999876654 445666543 566677664 57
Q ss_pred EEEEeCCCCEEEEEeecCCcceEE-eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 205 LIFATLDGDIHVAVIDDVANETRT-AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g~~~~~-~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
|+|++.|.+|++||+.+ |...++ .|.+-+. ++.|+-||.. |++.+.|+.|||||.++|+...-
T Consensus 147 Llsag~Dn~v~iWnv~t-geali~l~hpd~i~----S~sfn~dGs~---l~TtckDKkvRv~dpr~~~~v~e-------- 210 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGT-GEALITLDHPDMVY----SMSFNRDGSL---LCTTCKDKKVRVIDPRRGTVVSE-------- 210 (472)
T ss_pred HhhccCCceEEEEeccC-CceeeecCCCCeEE----EEEeccCCce---eeeecccceeEEEcCCCCcEeee--------
Confidence 99999999999999998 622221 2544433 5899999986 88999999999999999995421
Q ss_pred eeeeeeeeeeccce-eEEEEcCCc-eEEEE----cCCcEEEEECCCCceEEE--EeeccCCeEEEEEEecCCEE-EEEeC
Q 046773 284 VMGWRMLTEFTEFV-GRVRVTSHE-SAVAC----TSSRVITFDLRNQGMVLG--ERGYGRGLYVTSVDVNAEAY-IVVEN 354 (453)
Q Consensus 284 v~~w~~l~~h~~~v-~~v~~s~~~-~~vas----~d~tIrlWDl~t~~~~~~--~~g~~~~~~v~~~~~~g~~l-~s~s~ 354 (453)
..+|.+.- .++-|-.++ +++.+ ++..+-|||..+-..... +.....++...-++++-+.+ +.+-+
T Consensus 211 ------~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 211 ------GVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred ------cccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecC
Confidence 12333211 123343333 33332 346799999876543322 22333445445567766654 55567
Q ss_pred CCccccCcceEEEEEcCCC
Q 046773 355 RELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 355 dg~~~~~~~~i~Iw~~~tg 373 (453)
|+ .||-+.+...
T Consensus 285 D~-------~IRYyEit~d 296 (472)
T KOG0303|consen 285 DS-------SIRYFEITNE 296 (472)
T ss_pred Cc-------ceEEEEecCC
Confidence 77 9998887654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-10 Score=119.08 Aligned_cols=246 Identities=13% Similarity=0.138 Sum_probs=152.5
Q ss_pred ccccCceeeEEeeCCCCCCCCCCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE
Q 046773 122 FRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII 200 (453)
Q Consensus 122 w~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f 200 (453)
|+.+....+...|+ +++ . -.|.|++|.+ ..++||-.+++|-||+..+.+-.++...|.+ .|-+++.
T Consensus 229 ~~~~~l~k~~~~fe--k~e--k-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~g--------gv~~L~~ 295 (626)
T KOG2106|consen 229 LRGGSLVKRQGIFE--KRE--K-KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDG--------GVFSLCM 295 (626)
T ss_pred ccCCceEEEeeccc--ccc--c-eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCC--------ceEEEEE
Confidence 34444444444443 564 3 5699999987 4789999999999999988887777666654 3555654
Q ss_pred -cCCeEEEEeCCCCEEEEEeec-----------CC-cceE-Eeee-------------ccee----------cCce-EEE
Q 046773 201 -TDSQLIFATLDGDIHVAVIDD-----------VA-NETR-TAHF-------------GSVM----------DDGV-LID 242 (453)
Q Consensus 201 -~g~~LasgS~D~tIkvWd~~~-----------~g-~~~~-~~~~-------------~~v~----------~~~~-~v~ 242 (453)
.+-.|+||..|+.|..||-+- .| +++. .++. |.+. .+.. -++
T Consensus 296 lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla 375 (626)
T KOG2106|consen 296 LRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLA 375 (626)
T ss_pred ecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEE
Confidence 334577799999999998321 11 1111 1110 0000 0100 144
Q ss_pred EeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEEcCCcEEEEEC
Q 046773 243 FTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVACTSSRVITFDL 321 (453)
Q Consensus 243 Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas~d~tIrlWDl 321 (453)
.+|+... |++++-|++++||| ..+.. |.. -..+++-++.|+|.+. ++++..+.--+-|.
T Consensus 376 ~hps~~q---~~T~gqdk~v~lW~--~~k~~-------------wt~--~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 376 THPSKNQ---LLTCGQDKHVRLWN--DHKLE-------------WTK--IIEDPAECADFHPSGVVAVGTATGRWFVLDT 435 (626)
T ss_pred cCCChhh---eeeccCcceEEEcc--CCcee-------------EEE--EecCceeEeeccCcceEEEeeccceEEEEec
Confidence 4555443 77999999999999 32211 211 1236788899998774 34455677788899
Q ss_pred CCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEE-EecCCCeeEEEEeeCCCeE
Q 046773 322 RNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRF-SLRADRNVNVMGCMNQGYA 398 (453)
Q Consensus 322 ~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l-~~~~~~v~~~~~~~~~~~l 398 (453)
++.. +.++ +. ..+..+..++|+|..+|.+|-|+ .|.|+.++.. ...... ..+..-+..+-+++|+.++
T Consensus 436 e~~~-lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~-------~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 436 ETQD-LVTIHTD-NEQLSVVRYSPDGAFLAVGSHDN-------HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL 506 (626)
T ss_pred ccce-eEEEEec-CCceEEEEEcCCCCEEEEecCCC-------eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceE
Confidence 9854 4443 33 55678888999999999999999 8899877643 211111 1111224555566666665
Q ss_pred EEEeC-CeEEEE
Q 046773 399 LMCVE-GVIRVW 409 (453)
Q Consensus 399 ls~s~-~tIrlW 409 (453)
.+-+. -.|-.|
T Consensus 507 ~~~S~d~eiLyW 518 (626)
T KOG2106|consen 507 VSNSGDYEILYW 518 (626)
T ss_pred EeccCceEEEEE
Confidence 55444 455555
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.6e-12 Score=130.68 Aligned_cols=207 Identities=9% Similarity=-0.055 Sum_probs=126.7
Q ss_pred CCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCC---CeEEEeeCCCCcEEecccccCCcceeee
Q 046773 211 DGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG---RAFHIWDRQAEEVFVGGDLTDHNTVMGW 287 (453)
Q Consensus 211 D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D---~tIrvWD~~tg~~~~g~~l~~~~~v~~w 287 (453)
+.+|.|||.+....+++..+...+. .+.|||||+. |+..|.+ .+|.+||+++++... +
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~----~p~wSPDG~~---la~~s~~~~~~~i~i~dl~tg~~~~------------l 243 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLM----SPAWSPDGSK---LAYVSFENKKSQLVVHDLRSGARKV------------V 243 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccc----cceEcCCCCE---EEEEEecCCCcEEEEEeCCCCceEE------------E
Confidence 4678999987622344444433222 3799999997 4454543 479999999886211 0
Q ss_pred eeeeeeccceeEEEEcCCce--EEEE-cCCcEE--EEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEe-CCCccccC
Q 046773 288 RMLTEFTEFVGRVRVTSHES--AVAC-TSSRVI--TFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVE-NRELENQN 361 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s~~~~--~vas-~d~tIr--lWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~ 361 (453)
..+.+| ...++|+|++. +.++ .++.++ +||+.++.. .++..+.......+++|+|+.++.++ .++
T Consensus 244 ~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----- 314 (429)
T PRK01742 244 ASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSG----- 314 (429)
T ss_pred ecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCC-----
Confidence 112222 33578998874 3333 356555 557776543 34433333333467889998877665 355
Q ss_pred cceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEE
Q 046773 362 RRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAA 440 (453)
Q Consensus 362 ~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~las 440 (453)
..+||+++.. .....+. +. . ....++|++++++..+...+-+||+.+|++......+... --+|+||++.|+.
T Consensus 315 --~~~I~~~~~~~~~~~~l~-~~-~-~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~-~~~~sPdG~~i~~ 388 (429)
T PRK01742 315 --SPQVYRMSASGGGASLVG-GR-G-YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFLDE-SPSISPNGIMIIY 388 (429)
T ss_pred --CceEEEEECCCCCeEEec-CC-C-CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCCCC-CceECCCCCEEEE
Confidence 7788887642 2222222 11 1 3456788999887776644556999999765433333222 1268999999998
Q ss_pred E-eCCcEEEEec
Q 046773 441 S-CGTNIHLWDF 451 (453)
Q Consensus 441 g-~D~~IklWDl 451 (453)
+ .|+.+++|++
T Consensus 389 ~s~~g~~~~l~~ 400 (429)
T PRK01742 389 SSTQGLGKVLQL 400 (429)
T ss_pred EEcCCCceEEEE
Confidence 8 8888888874
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-14 Score=150.75 Aligned_cols=220 Identities=14% Similarity=0.183 Sum_probs=147.1
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t 269 (453)
+|-+..|| |+.+++||.|.-+|||..++ + ....++|.+.+.. ++.+.+.- .+|++|.|+.||+|-+.+
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rGhs~ditd----lavs~~n~---~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRGHSGDITD----LAVSSNNT---MIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccc-hhhhccCCCCccccch----hccchhhh---hhhhcccCceEEEEecCC
Confidence 68888887 88999999999999999887 4 6778889887653 23333322 378999999999999999
Q ss_pred CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEE---EeeccCCeEEEE--EEe
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLG---ERGYGRGLYVTS--VDV 344 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~---~~g~~~~~~v~~--~~~ 344 (453)
+..+ ..|++|++.|.+++|+|.. +++.|+|+++||.+=--.+.. ... .....+.+ |..
T Consensus 264 ~~pv--------------svLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 264 GAPV--------------SVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKF-TEKDLVDSILFEN 326 (1113)
T ss_pred CchH--------------HHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCc-ccccceeeeeccc
Confidence 8732 2378999999999999964 556789999999881111100 111 11122333 333
Q ss_pred cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCC-eEEEEeC-CeEEEEECCCCeEEEEecc
Q 046773 345 NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQG-YALMCVE-GVIRVWEVEGGEYMYSFRE 422 (453)
Q Consensus 345 ~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~-~lls~s~-~tIrlWD~~tG~~l~tL~g 422 (453)
.+...++++.|+ ..+.|..+.- ..+...+.-+.++.+.. +.+++-. ..+.+|++.+|..++.+.|
T Consensus 327 ~~~~f~Tgs~d~-------ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g 393 (1113)
T KOG0644|consen 327 NGDRFLTGSRDG-------EARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG 393 (1113)
T ss_pred cccccccccCCc-------ccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc
Confidence 455667777777 6666654421 12222222222222211 2222222 6789999999999999999
Q ss_pred cCCceEE--EEec-CCCEEEEE-eCCcEEEEecC
Q 046773 423 RIGEEVI--AFVG-DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 423 h~~~~V~--a~s~-d~~~lasg-~D~~IklWDl~ 452 (453)
|.++ +. .+.| +.++.-++ .||++.|||+-
T Consensus 394 hsd~-~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 394 HSDE-VYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred cccc-eeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 9988 66 5566 55554577 99999999973
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=133.45 Aligned_cols=156 Identities=18% Similarity=0.210 Sum_probs=113.4
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeE---EEEecCCCCCccccccceEEEEEEcC---CeEEE
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLH---VRTFRPQHSDRLGQFSRAVSGIIITD---SQLIF 207 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~---~~tl~gh~~~~~~~~s~~V~~i~f~g---~~Las 207 (453)
+||.. . -|.|.||+ -.|+||---+.|++|...+|.- -+.|.+|. .+|..|+.++ ..++|
T Consensus 208 ~ghk~--E--Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~--------~SVEDLqWSptE~~vfaS 275 (440)
T KOG0302|consen 208 NGHKG--E--GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT--------KSVEDLQWSPTEDGVFAS 275 (440)
T ss_pred cccCc--c--ceeeecccccccccccCccccceEeeeeccCceeecCccccccc--------cchhhhccCCccCceEEe
Confidence 48872 2 48999998 2578887779999999999863 24455654 3788898864 57999
Q ss_pred EeCCCCEEEEEeecCCc--ce--EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 208 ATLDGDIHVAVIDDVAN--ET--RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 208 gS~D~tIkvWd~~~~g~--~~--~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
||+|++|+|||+.. +. .+ .+.|.+.|+ .|.|+.+-. .||||+.|+|++|||++.=+. + .|
T Consensus 276 cS~DgsIrIWDiRs-~~~~~~~~~kAh~sDVN----VISWnr~~~---lLasG~DdGt~~iwDLR~~~~--~----~p-- 339 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRS-GPKKAAVSTKAHNSDVN----VISWNRREP---LLASGGDDGTLSIWDLRQFKS--G----QP-- 339 (440)
T ss_pred eecCceEEEEEecC-CCccceeEeeccCCcee----eEEccCCcc---eeeecCCCceEEEEEhhhccC--C----Cc--
Confidence 99999999999987 41 11 244555543 577876643 499999999999999986330 0 00
Q ss_pred eeeeeeeeeeccceeEEEEcCCc--e-EEEEcCCcEEEEECCC
Q 046773 284 VMGWRMLTEFTEFVGRVRVTSHE--S-AVACTSSRVITFDLRN 323 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s~~~--~-~vas~d~tIrlWDl~t 323 (453)
-.++.-|..+|.+|.++|.. . ++++.|..|.||||..
T Consensus 340 ---VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 340 ---VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ---ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 02456788999999999754 3 4445678999999975
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-12 Score=122.62 Aligned_cols=226 Identities=15% Similarity=0.233 Sum_probs=156.8
Q ss_pred EEEEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE
Q 046773 196 SGIIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV 272 (453)
Q Consensus 196 ~~i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~ 272 (453)
.++.|+ |..||.|..||.|-+||..+.+ .+++.+|.-.+. ++..|+|||. |.++|.|..|++||+..|.+
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~----sl~WS~dgr~---LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPIT----SLCWSRDGRK---LLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccccee----EEEecCCCCE---eeeecCCceeEEEeccCCCc
Confidence 346676 8999999999999999998844 356667766553 5899999997 78999999999999999984
Q ss_pred EecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEc-CCcEEEEECCCC--ceEEEEeeccCCeEEEE---EEe
Q 046773 273 FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACT-SSRVITFDLRNQ--GMVLGERGYGRGLYVTS---VDV 344 (453)
Q Consensus 273 ~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~-d~tIrlWDl~t~--~~~~~~~g~~~~~~v~~---~~~ 344 (453)
+.- .-+.++|..++++|+. .++++- +..-.|=++..+ .++-.. ..+.-+.+.+ |+.
T Consensus 100 l~r---------------irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d-~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 100 LKR---------------IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD-DDGDLNSSASHGVFDR 163 (405)
T ss_pred eeE---------------EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC-CccccccccccccccC
Confidence 321 1245788888888754 566652 322223333322 222111 1122222333 888
Q ss_pred cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC-CCeeEEEEeeCCCeEEEE-eCCeEEEEECCC----C----
Q 046773 345 NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-DRNVNVMGCMNQGYALMC-VEGVIRVWEVEG----G---- 414 (453)
Q Consensus 345 ~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-~~v~~~~~~~~~~~lls~-s~~tIrlWD~~t----G---- 414 (453)
.|+.+++|.+-| -+-|.+.+|-+|+..+.... ..++.+.++..++.++.- ++++||.++++. |
T Consensus 164 ~g~yIitGtsKG-------kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 164 RGKYIITGTSKG-------KLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred CCCEEEEecCcc-------eEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 899999999999 99999999999998887655 568888888899888864 459999999873 1
Q ss_pred -eEEEEecccCCceEE---EEecCCCEEEEE--eCCcEEEEec
Q 046773 415 -EYMYSFRERIGEEVI---AFVGDDRHVAAS--CGTNIHLWDF 451 (453)
Q Consensus 415 -~~l~tL~gh~~~~V~---a~s~d~~~lasg--~D~~IklWDl 451 (453)
+..+.|..-.+..-| +|+.||.+|+.+ .-..+.||.-
T Consensus 237 ~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 237 VEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred cChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEec
Confidence 111222111111012 788999998765 6778999974
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-12 Score=133.23 Aligned_cols=229 Identities=10% Similarity=0.071 Sum_probs=143.4
Q ss_pred eCCCcEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCCC---CEEEEEeecCC-cceEEeeecce
Q 046773 161 FADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDG---DIHVAVIDDVA-NETRTAHFGSV 234 (453)
Q Consensus 161 S~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~---tIkvWd~~~~g-~~~~~~~~~~v 234 (453)
+++.+|.|||..... .+++..|.. .+.. ++++|++|++.|.+. +|++||+.+ | ...+....+..
T Consensus 181 ~~~~~i~i~d~dg~~-~~~lt~~~~--------~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t-g~~~~l~~~~g~~ 250 (429)
T PRK01742 181 SQPYEVRVADYDGFN-QFIVNRSSQ--------PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS-GARKVVASFRGHN 250 (429)
T ss_pred CceEEEEEECCCCCC-ceEeccCCC--------ccccceEcCCCCEEEEEEecCCCcEEEEEeCCC-CceEEEecCCCcc
Confidence 456899999986554 667765443 2333 345688999988653 599999977 4 22222111211
Q ss_pred ecCceEEEEeCCCceeeEEEEeeCCCeEEEe--eCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEE
Q 046773 235 MDDGVLIDFTGCSRYWVGLYAGLAGRAFHIW--DRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVA 310 (453)
Q Consensus 235 ~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvW--D~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~va 310 (453)
..++|+|||+++ +++.+.|+.++|| |+.+++.. .++.+...+..+.|+|++. +.+
T Consensus 251 ----~~~~wSPDG~~L--a~~~~~~g~~~Iy~~d~~~~~~~---------------~lt~~~~~~~~~~wSpDG~~i~f~ 309 (429)
T PRK01742 251 ----GAPAFSPDGSRL--AFASSKDGVLNIYVMGANGGTPS---------------QLTSGAGNNTEPSWSPDGQSILFT 309 (429)
T ss_pred ----CceeECCCCCEE--EEEEecCCcEEEEEEECCCCCeE---------------eeccCCCCcCCEEECCCCCEEEEE
Confidence 137999999973 2344567776666 66666521 2334444566788998874 333
Q ss_pred Ec-CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 311 CT-SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 311 s~-d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
+. ++..+||++...+.......+.. ...+++|+|+.++.++.++ .+ +||+.+++... +... ......
T Consensus 310 s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-------i~-~~Dl~~g~~~~-lt~~-~~~~~~ 377 (429)
T PRK01742 310 SDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-------VV-KQDLTSGSTEV-LSST-FLDESP 377 (429)
T ss_pred ECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-------EE-EEECCCCCeEE-ecCC-CCCCCc
Confidence 43 46788888754322122212221 3356889999988876654 44 48888886542 2211 123456
Q ss_pred EEeeCCCeEEEEeC-CeEEEEEC--CCCeEEEEecccCCceEE--EEec
Q 046773 390 MGCMNQGYALMCVE-GVIRVWEV--EGGEYMYSFRERIGEEVI--AFVG 433 (453)
Q Consensus 390 ~~~~~~~~lls~s~-~tIrlWD~--~tG~~l~tL~gh~~~~V~--a~s~ 433 (453)
.++|++++++.++. +.+++|++ .+|++++.|.+|.+. +. +++|
T Consensus 378 ~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~-~~~p~wsp 425 (429)
T PRK01742 378 SISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQ-VKFPAWSP 425 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCC-CCCcccCC
Confidence 78999999887776 77788876 469999999888776 55 4554
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=128.58 Aligned_cols=236 Identities=14% Similarity=0.136 Sum_probs=154.9
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-cc
Q 046773 147 CRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA-NE 225 (453)
Q Consensus 147 v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g-~~ 225 (453)
|..+.++...++|.+.|+|||.|-++- ..++|+-|.. .+.+|...-..-+++++...|-|||.+..- ++
T Consensus 112 V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s---------~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~ 181 (433)
T KOG0268|consen 112 VRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKS---------VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVS 181 (433)
T ss_pred eeeEEecccceEEecCCcceeeeeccC-Ccceeeeccc---------cccccccccccccccccCceeeecccccCCccc
Confidence 788888888899999999999999876 4677775422 223333221122344556678999986411 12
Q ss_pred eEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC
Q 046773 226 TRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH 305 (453)
Q Consensus 226 ~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~ 305 (453)
.+..-...+ ..+.|+|--.. .|+++..|++|-|+|++++..+. . + -.+-.-|.++++|.
T Consensus 182 smswG~Dti----~svkfNpvETs--ILas~~sDrsIvLyD~R~~~Pl~-------K-V-------i~~mRTN~IswnPe 240 (433)
T KOG0268|consen 182 SMSWGADSI----SSVKFNPVETS--ILASCASDRSIVLYDLRQASPLK-------K-V-------ILTMRTNTICWNPE 240 (433)
T ss_pred eeecCCCce----eEEecCCCcch--heeeeccCCceEEEecccCCccc-------e-e-------eeeccccceecCcc
Confidence 222111111 24788887654 48999999999999999987321 0 0 01233467888885
Q ss_pred c--eEEEEcCCcEEEEECCCCceEEE-EeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE-Ee
Q 046773 306 E--SAVACTSSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF-SL 381 (453)
Q Consensus 306 ~--~~vas~d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-~~ 381 (453)
. .++|+-|..+..+|++.-..... ..+|+..+.-..|+|.|.-+++||.|. +|||+.++.+..-... +-
T Consensus 241 afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-------sIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 241 AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-------SIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc-------eEEEeecCCCcchhhhhHh
Confidence 4 34456678899999987543322 256654444444566678899999999 9999998866321110 00
Q ss_pred cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 382 RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 382 ~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
+=..|..+.++.|.+|++++|+ +.||||-....+.+..+
T Consensus 314 RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred hhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 1133678889999999999999 99999988765554433
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-11 Score=118.52 Aligned_cols=277 Identities=13% Similarity=0.147 Sum_probs=171.2
Q ss_pred CCCCCCCeEEEEEEecC-------CEEEEEeCCCcEEEEECCCCeEEEEe---cCC-CCCccccccceEEEEE--Ec---
Q 046773 138 DVDNPDGLTCRCLTLSD-------LYLACGFADGAVRLFDLTTRLHVRTF---RPQ-HSDRLGQFSRAVSGII--IT--- 201 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~-------~~LaSGS~D~TIrlWD~~tg~~~~tl---~gh-~~~~~~~~s~~V~~i~--f~--- 201 (453)
+|..+ ++.+||+. ..+||.+ -+++-|+....---++-| ... +.+ ..-.++ .+
T Consensus 36 d~~~~----I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~E-------sfytcsw~yd~~~ 103 (385)
T KOG1034|consen 36 DHNKP----IFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDE-------SFYTCSWSYDSNT 103 (385)
T ss_pred cCCCc----cceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCc-------ceEEEEEEecCCC
Confidence 67645 78999973 3556555 457788876443323333 211 111 111122 22
Q ss_pred -CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccc
Q 046773 202 -DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDL 278 (453)
Q Consensus 202 -g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l 278 (453)
+-.||.|+.=|.|||-|+.+ + ..-+++|.+.+. .+-|.|+--. .|.|+|.|.+|||||+++..++.-
T Consensus 104 ~~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sIN----eik~~p~~~q--lvls~SkD~svRlwnI~~~~Cv~V--- 173 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSIN----EIKFHPDRPQ--LVLSASKDHSVRLWNIQTDVCVAV--- 173 (385)
T ss_pred CCeeEEeecceeEEEEEecch-hhhccceeccCccch----hhhcCCCCCc--EEEEecCCceEEEEeccCCeEEEE---
Confidence 34678888889999999877 4 456778877664 3788888543 478999999999999999884310
Q ss_pred cCCcceeeeeeeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCce------EE------------------EE--
Q 046773 279 TDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQGM------VL------------------GE-- 330 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~------~~------------------~~-- 330 (453)
.--+.||.+.|.+|-|++++..++ +.|.++++|+|...+. .. ..
T Consensus 174 --------fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 174 --------FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred --------ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 012568999999999998775444 4578999999984321 10 00
Q ss_pred eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc-CCCeeEE-------------EEEecCCCeeEEEEeeC--
Q 046773 331 RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV-DTFEEVC-------------RFSLRADRNVNVMGCMN-- 394 (453)
Q Consensus 331 ~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~-~tg~~v~-------------~l~~~~~~v~~~~~~~~-- 394 (453)
.---|.++|-|+.+-|+.++|-|-++ .|-.|.. .-.+.+. ++....-.+--+.|..|
T Consensus 246 t~diHrnyVDCvrw~gd~ilSkscen-------aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWFGDFILSKSCEN-------AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred ccccccchHHHHHHHhhheeecccCc-------eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 01123455666666788888877777 8888865 2122111 11111111112223333
Q ss_pred CCeEEEEeC-CeEEEEECCCCeE--EEEecccC-CceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 395 QGYALMCVE-GVIRVWEVEGGEY--MYSFRERI-GEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 395 ~~~lls~s~-~tIrlWD~~tG~~--l~tL~gh~-~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
.+.++.+.. |.|.+||+...+. ..||.-+. +..|. +|+-|+.+|+.- +|++|-=||-
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 344444444 9999999987644 33443332 23355 788999999887 9999999984
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-13 Score=145.29 Aligned_cols=238 Identities=17% Similarity=0.184 Sum_probs=156.6
Q ss_pred EEEEEecC--C----EEEEEeCCCcEEEEECCC---Ce---EEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCC
Q 046773 147 CRCLTLSD--L----YLACGFADGAVRLFDLTT---RL---HVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLD 211 (453)
Q Consensus 147 v~~lafs~--~----~LaSGS~D~TIrlWD~~t---g~---~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D 211 (453)
.++|++.. + +||.|..||+|-+||... +. .+.++.-|++ .|.++.|+ +..||||+.|
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G--------~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG--------PVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCC--------ceeeeeccccCCceeeccCCC
Confidence 45566542 2 599999999999999866 32 3555665554 68888875 6689999999
Q ss_pred CCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeee
Q 046773 212 GDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 212 ~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l 290 (453)
+.|.|||++..- .++.--......+-..|+..-.=+ -.|||++.++.+-|||++..+ .+. +.+.
T Consensus 139 geI~iWDlnn~~-tP~~~~~~~~~~eI~~lsWNrkvq--hILAS~s~sg~~~iWDlr~~~pii~---ls~~--------- 203 (1049)
T KOG0307|consen 139 GEILIWDLNKPE-TPFTPGSQAPPSEIKCLSWNRKVS--HILASGSPSGRAVIWDLRKKKPIIK---LSDT--------- 203 (1049)
T ss_pred CcEEEeccCCcC-CCCCCCCCCCcccceEeccchhhh--HHhhccCCCCCceeccccCCCcccc---cccC---------
Confidence 999999997622 111100000111112244333212 148999999999999999876 221 0000
Q ss_pred eeeccceeEEEEcCCc---eEEEEcCC---cEEEEECCCCceEEE-EeeccCCeEEEEEEecC-CEEEEEeCCCccccCc
Q 046773 291 TEFTEFVGRVRVTSHE---SAVACTSS---RVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNA-EAYIVVENRELENQNR 362 (453)
Q Consensus 291 ~~h~~~v~~v~~s~~~---~~vas~d~---tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g-~~l~s~s~dg~~~~~~ 362 (453)
+-...++.|+++|+. +++++.|+ .|.+||++.-....+ +++|..++...+..+.+ +.+++..-|+
T Consensus 204 -~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~------ 276 (1049)
T KOG0307|consen 204 -PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN------ 276 (1049)
T ss_pred -CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCC------
Confidence 001235567788764 56777653 699999986543333 36676665444444444 4566666677
Q ss_pred ceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCe
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGE 415 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~ 415 (453)
.|-+|+.+|+|-+.++....+|.+.+.||+-.-.+++++. |.|.|..+.++.
T Consensus 277 -~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 277 -RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -CeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999999888899999999984433444444 999999988653
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-11 Score=132.54 Aligned_cols=272 Identities=14% Similarity=0.143 Sum_probs=157.0
Q ss_pred EEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE----cCCeEEEEeCCCCEEEEEeecCC
Q 046773 150 LTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII----TDSQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 150 lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f----~g~~LasgS~D~tIkvWd~~~~g 223 (453)
+.|.+ +.|+++-.-.+|+|||-+.++++.-|..+. +....|+.+.+ |...|.+||.||.||||.-...+
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 44444 456666556789999999999988886322 12235777775 34579999999999999632211
Q ss_pred ---------cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeec
Q 046773 224 ---------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT 294 (453)
Q Consensus 224 ---------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~ 294 (453)
...+..+.-.-...+..++.-.+... |++++.=+.|||||+...++..- ++ .+-.
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~---Ll~tGd~r~IRIWDa~~E~~~~d--iP-----------~~s~ 1208 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH---LLVTGDVRSIRIWDAHKEQVVAD--IP-----------YGSS 1208 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCe---EEecCCeeEEEEEecccceeEee--cc-----------cCCC
Confidence 11122211000111223444333222 44545568999999988774321 00 0111
Q ss_pred cceeEEEE---cCCceEEEEcCCcEEEEECCCCc--eEEE-EeeccCCeEEEE--EEecCC-EEEEEeCCCccccCcceE
Q 046773 295 EFVGRVRV---TSHESAVACTSSRVITFDLRNQG--MVLG-ERGYGRGLYVTS--VDVNAE-AYIVVENRELENQNRRLA 365 (453)
Q Consensus 295 ~~v~~v~~---s~~~~~vas~d~tIrlWDl~t~~--~~~~-~~g~~~~~~v~~--~~~~g~-~l~s~s~dg~~~~~~~~i 365 (453)
..|.++.- .++-++.+.+||.||++|.+... +... .+.|...-.|.. +...|- .++++|.+| .|
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G-------~I 1281 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG-------DI 1281 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCC-------eE
Confidence 12222221 12224455689999999998752 2222 244544322444 445454 489999999 99
Q ss_pred EEEEcCCCeeEEEEEecC-----CCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccC-------CceEE--EE
Q 046773 366 IVRRVDTFEEVCRFSLRA-----DRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERI-------GEEVI--AF 431 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~-----~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~-------~~~V~--a~ 431 (453)
++||+........++... +.+..+..+.+...+++++.+.|+|||+. |+.+..++-+. +. +. +|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs-~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGS-VSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCcccccCcCCC-cceeee
Confidence 999987632111111111 12555666666555554445999999986 66666554332 22 33 56
Q ss_pred ecCCCEEEEE-eCCcEEEEec
Q 046773 432 VGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 432 s~d~~~lasg-~D~~IklWDl 451 (453)
.|---.||.| .|.+|-|+-.
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred cchhHhhhhccCCceEEEeec
Confidence 6766678888 9999999853
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.9e-12 Score=126.39 Aligned_cols=203 Identities=12% Similarity=0.107 Sum_probs=135.9
Q ss_pred ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 225 ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 225 ~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
+..+.+.+.+. .++|+|.-.. .++|+|+--++|-+||+.+.+.- -..+ .....|..+|+++.|+|
T Consensus 180 ~v~kv~~~Rit----~l~fHPt~~~-~lva~GdK~G~VG~Wn~~~~~~d-------~d~v---~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 180 NVAKVTDRRIT----SLAFHPTENR-KLVAVGDKGGQVGLWNFGTQEKD-------KDGV---YLFTPHSGPVSGLKFSP 244 (498)
T ss_pred ceeEecccceE----EEEecccCcc-eEEEEccCCCcEEEEecCCCCCc-------cCce---EEeccCCccccceEecC
Confidence 33444555543 4899998653 25889999999999999754410 0001 23457889999999997
Q ss_pred Cc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC--EEEEEeCCCccccCcceEEEEEcCCCe-eEEE
Q 046773 305 HE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE--AYIVVENRELENQNRRLAIVRRVDTFE-EVCR 378 (453)
Q Consensus 305 ~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~--~l~s~s~dg~~~~~~~~i~Iw~~~tg~-~v~~ 378 (453)
.. ++++|.|+|||+=|++++.....+...........++++.+ .++.+..=| ...+||..++. +...
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-------~f~~iD~R~~~s~~~~ 317 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-------NFNVIDLRTDGSEYEN 317 (498)
T ss_pred CChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-------ceEEEEeecCCccchh
Confidence 54 56778899999999997632111111123334455555433 333344334 66889988753 3555
Q ss_pred EEecCCCeeEEEEeeCCC-eEEEEeC-CeEEEEECCC--CeE---EEEecccCCceEE--EEecCCCEEEEE-eCCcEEE
Q 046773 379 FSLRADRNVNVMGCMNQG-YALMCVE-GVIRVWEVEG--GEY---MYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHL 448 (453)
Q Consensus 379 l~~~~~~v~~~~~~~~~~-~lls~s~-~tIrlWD~~t--G~~---l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~Ikl 448 (453)
+..|.-.|.++++.|... ++++++- +|+||||+.. ++. |+++ .|.-. |+ .|||++-.|++. .|..|+|
T Consensus 318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~Hrrs-V~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRS-VNSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc-cccce-eeeeEEcCCCCceEeeccCCceEE
Confidence 667777788888888544 4555555 9999999985 322 5665 47777 87 589988778887 9999999
Q ss_pred Eec
Q 046773 449 WDF 451 (453)
Q Consensus 449 WDl 451 (453)
||-
T Consensus 396 ~ds 398 (498)
T KOG4328|consen 396 FDS 398 (498)
T ss_pred eec
Confidence 996
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-11 Score=118.33 Aligned_cols=259 Identities=14% Similarity=0.190 Sum_probs=159.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE----cCCeEEEEeCCCCEEEEEeecCCcceEE--
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII----TDSQLIFATLDGDIHVAVIDDVANETRT-- 228 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f----~g~~LasgS~D~tIkvWd~~~~g~~~~~-- 228 (453)
..+|++-..++|||+|..||+.++.|+++.. .+..+.| +++.+.|||.||+||+||+.+.+...+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~--------~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA--------TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC--------cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec
Confidence 3588888899999999999999999998764 3444555 3568999999999999999874322211
Q ss_pred -eeecceecCceEEEEeC--CCceeeEEEEee----CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 229 -AHFGSVMDDGVLIDFTG--CSRYWVGLYAGL----AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 229 -~~~~~v~~~~~~v~Fs~--dg~~~~~LaSgS----~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
.+.+.. .+.|+. +++. ++.|+ .|-.|-+||++..+.+.+ .....|.+-|.+|+
T Consensus 113 ~~~~~~~-----f~~ld~nck~~i---i~~GtE~~~s~A~v~lwDvR~~qq~l~------------~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 113 TQQSGTP-----FICLDLNCKKNI---IACGTELTRSDASVVLWDVRSEQQLLR------------QLNESHNDDVTQLR 172 (376)
T ss_pred cCCCCCc-----ceEeeccCcCCe---EEeccccccCceEEEEEEeccccchhh------------hhhhhccCcceeEE
Confidence 222111 133333 3332 55554 467899999998774221 11346788999999
Q ss_pred EcCC---ceEEEEcCCcEEEEECCCCce---EEEEeeccCCeEEEEEEecCC---EEEEEeCCCccccCcceEEEEEcCC
Q 046773 302 VTSH---ESAVACTSSRVITFDLRNQGM---VLGERGYGRGLYVTSVDVNAE---AYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 302 ~s~~---~~~vas~d~tIrlWDl~t~~~---~~~~~g~~~~~~v~~~~~~g~---~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
|+|. -++++|.|+-|-|+|++.... ++..--+ ...|-++.+.++ ++...+-.+ +..+|+++.
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--~sSI~~igw~~~~ykrI~clTH~E-------tf~~~ele~ 243 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--GSSIHLIGWLSKKYKRIMCLTHME-------TFAIYELED 243 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcc--cceeeeeeeecCCcceEEEEEccC-------ceeEEEccC
Confidence 9864 467778899999999975421 1111111 223444444443 466667777 899999998
Q ss_pred CeeEEEEEec-----C----CCeeEEEE--eeCC-CeE-EEEeC-CeEEEE---ECCCC---eEEEEecccCCceEEEEe
Q 046773 373 FEEVCRFSLR-----A----DRNVNVMG--CMNQ-GYA-LMCVE-GVIRVW---EVEGG---EYMYSFRERIGEEVIAFV 432 (453)
Q Consensus 373 g~~v~~l~~~-----~----~~v~~~~~--~~~~-~~l-ls~s~-~tIrlW---D~~tG---~~l~tL~gh~~~~V~a~s 432 (453)
+.+...+.-. . +....++- +|.+ ... +.+.. ++..+. |..++ +.+..|.||....|.++.
T Consensus 244 ~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~ 323 (376)
T KOG1188|consen 244 GSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDIL 323 (376)
T ss_pred CChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHh
Confidence 7654332110 0 00111221 1211 222 33332 444444 44444 456677776555366655
Q ss_pred c--CCCEEEEE-eCCcEEEEe
Q 046773 433 G--DDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 433 ~--d~~~lasg-~D~~IklWD 450 (453)
. .+..+-|| +||.+.+|.
T Consensus 324 ~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 324 FDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred hhcccceeeccCCCceEEEEe
Confidence 4 44467788 999999997
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-11 Score=117.43 Aligned_cols=269 Identities=11% Similarity=0.107 Sum_probs=163.5
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCC------eEEEEecCCCCCccccccceEEEEEEc--CCeEEE
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTR------LHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIF 207 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg------~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~Las 207 (453)
||.-. |.+++||. .+||||+.|..++||+++.- +.+... +||. ..-|-+++|+ +++|.|
T Consensus 54 ~H~GC----iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H------~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 54 EHTGC----INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPH------RSNIFSLEFDLENRFLYS 122 (609)
T ss_pred hhccc----cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCcc------ccceEEEEEccCCeeEec
Confidence 78733 78999985 69999999999999998644 444333 3332 1357789997 568999
Q ss_pred EeCCCCEEEEEeecCCcceEEe--ee---cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc----EEecccc
Q 046773 208 ATLDGDIHVAVIDDVANETRTA--HF---GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE----VFVGGDL 278 (453)
Q Consensus 208 gS~D~tIkvWd~~~~g~~~~~~--~~---~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~----~~~g~~l 278 (453)
|..|++|.+-|+++ - +++-+ |. +.|. .+..+|-.. .|++.+.|+-|-+||.+..+ .+.
T Consensus 123 G~~~~~VI~HDiEt-~-qsi~V~~~~~~~~~VY----~m~~~P~DN---~~~~~t~~~~V~~~D~Rd~~~~~~~~~---- 189 (609)
T KOG4227|consen 123 GERWGTVIKHDIET-K-QSIYVANENNNRGDVY----HMDQHPTDN---TLIVVTRAKLVSFIDNRDRQNPISLVL---- 189 (609)
T ss_pred CCCcceeEeeeccc-c-eeeeeecccCccccee----ecccCCCCc---eEEEEecCceEEEEeccCCCCCCceee----
Confidence 99999999999987 2 33332 21 1222 255566643 48889999999999998755 211
Q ss_pred cCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEE-EE---eeccCCe---EEEEEEecCCE
Q 046773 279 TDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVL-GE---RGYGRGL---YVTSVDVNAEA 348 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~-~~---~g~~~~~---~v~~~~~~g~~ 348 (453)
+......-..+.|+|.+ +++++..+.+-|||.+..+..+ +. .+-.+.. .-.-++++|+.
T Consensus 190 -----------~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q 258 (609)
T KOG4227|consen 190 -----------PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ 258 (609)
T ss_pred -----------ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe
Confidence 11111233456777644 4555666789999998754321 11 1111111 11236777777
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCee-EEEEEecCCC------eeEEEEeeCCCeEEEEeC-CeEEEEECCC-------
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFEE-VCRFSLRADR------NVNVMGCMNQGYALMCVE-GVIRVWEVEG------- 413 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~~-v~~l~~~~~~------v~~~~~~~~~~~lls~s~-~tIrlWD~~t------- 413 (453)
+++.-... ---++|+-.-.| +..+.-++++ +.++.|. ++..++++++ =.|.+|-+..
T Consensus 259 ~msiRR~~-------~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~ 330 (609)
T KOG4227|consen 259 FMSIRRGK-------CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGF 330 (609)
T ss_pred ehhhhccC-------CCEEeeeecccceeEeccCCCCcceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCc
Confidence 65533222 122334433111 1111112222 2233332 3344667777 6799997642
Q ss_pred ---C-------------eEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 414 ---G-------------EYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 414 ---G-------------~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
| +.+..|+||... ++ .|+|-...|+|+ -.+.+|||.
T Consensus 331 ~~IG~~~~~~~~~~~i~~~~~VLrGHRSv-~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 331 TQIGHDEEEMPSEIFIEKELTVLRGHRSV-PNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cccCcchhhCchhheecceeEEEeccccc-ccceeecCCcceEeccchhhheeccc
Confidence 1 236678999877 77 677888888887 899999994
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-11 Score=120.42 Aligned_cols=256 Identities=12% Similarity=0.134 Sum_probs=157.6
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC-eEEEEeC--CCCEEEEEeecC-C-cceEEeeecceecC
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS-QLIFATL--DGDIHVAVIDDV-A-NETRTAHFGSVMDD 237 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~-~LasgS~--D~tIkvWd~~~~-g-~~~~~~~~~~v~~~ 237 (453)
-.++||||+..-+..-.+..|+.+ . .+..|..+-+ .|+.+|+ |+.|++|.-+.+ + +...+-.++. .
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~-p-----g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd---~ 81 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAE-P-----GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD---N 81 (673)
T ss_pred CCceEEeecccccCccccccCCCC-C-----cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc---h
Confidence 347999998766544444433322 1 2445555533 3666665 666777765431 1 1222222222 1
Q ss_pred ceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC-ce-EEEEcCCc
Q 046773 238 GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH-ES-AVACTSSR 315 (453)
Q Consensus 238 ~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~-~~-~vas~d~t 315 (453)
.-.|+....+.+ ++||+-.++|+|||++.+.+. +.|.+|.+.|.+|.+.-. .. ++++..+.
T Consensus 82 ~~Cv~~~s~S~y---~~sgG~~~~Vkiwdl~~kl~h--------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGd 144 (673)
T KOG4378|consen 82 AFCVACASQSLY---EISGGQSGCVKIWDLRAKLIH--------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGD 144 (673)
T ss_pred HHHHhhhhccee---eeccCcCceeeehhhHHHHHh--------------hhccCCcceeEEEEecCCcceeEEeccCCc
Confidence 111232233343 789999999999999966542 347789999999999743 33 33345578
Q ss_pred EEEEECCCCceEEEEe-eccCCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEcCCCeeEEEE-EecCCCeeEEEEe
Q 046773 316 VITFDLRNQGMVLGER-GYGRGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTFEEVCRF-SLRADRNVNVMGC 392 (453)
Q Consensus 316 IrlWDl~t~~~~~~~~-g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-~~~~~~v~~~~~~ 392 (453)
|-|-.+.|+....++. +.++.+...-++++-. .|.++|.+| ++.+||+..-.++..+ ..|..--+.+.||
T Consensus 145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G-------~VtlwDv~g~sp~~~~~~~HsAP~~gicfs 217 (673)
T KOG4378|consen 145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKG-------AVTLWDVQGMSPIFHASEAHSAPCRGICFS 217 (673)
T ss_pred EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCC-------eEEEEeccCCCcccchhhhccCCcCcceec
Confidence 9999999986543332 2222222334455444 467788899 9999999865444332 2233224567888
Q ss_pred eCCCeEEEEeC--CeEEEEECCCCeEEEEecc-cCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 393 MNQGYALMCVE--GVIRVWEVEGGEYMYSFRE-RIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 393 ~~~~~lls~s~--~tIrlWD~~tG~~l~tL~g-h~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|....++++-+ +.|.++|+.+.+...+|.- |.=. -.+|.++|.+|+.| .-|.|.-+|+.
T Consensus 218 psne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pls-tvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 218 PSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLS-TVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred CCccceEEEecccceEEEeecccccccceeeecCCcc-eeeecCCceEEEeecCCceEEEEecc
Confidence 86555554433 9999999987665555532 2212 23889999999999 99999999974
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8e-11 Score=110.75 Aligned_cols=193 Identities=11% Similarity=0.130 Sum_probs=139.0
Q ss_pred EEeCCCceeeEEEEeeCCCeEEEeeCCC---CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEE
Q 046773 242 DFTGCSRYWVGLYAGLAGRAFHIWDRQA---EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVIT 318 (453)
Q Consensus 242 ~Fs~dg~~~~~LaSgS~D~tIrvWD~~t---g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrl 318 (453)
+.+|.+++ |+.|+.+++|-+..+++ +.... +.. .-.-+.++|..+++.++|..+ .+++++|+.|+=
T Consensus 17 a~sp~~~~---l~agn~~G~iav~sl~sl~s~sa~~------~gk-~~iv~eqahdgpiy~~~f~d~-~Lls~gdG~V~g 85 (325)
T KOG0649|consen 17 AISPSKQY---LFAGNLFGDIAVLSLKSLDSGSAEP------PGK-LKIVPEQAHDGPIYYLAFHDD-FLLSGGDGLVYG 85 (325)
T ss_pred hhCCcceE---EEEecCCCeEEEEEehhhhccccCC------CCC-cceeeccccCCCeeeeeeehh-heeeccCceEEE
Confidence 56788886 88999999999998764 22110 000 001234789999999999954 556677799997
Q ss_pred EECCCC----ce--EEEE--eecc-----CCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC
Q 046773 319 FDLRNQ----GM--VLGE--RGYG-----RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR 385 (453)
Q Consensus 319 WDl~t~----~~--~~~~--~g~~-----~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~ 385 (453)
|--+.. .| +... .-|. ..+....++|+.+.++.+.+|+ .+.-||+++|+-.+++.+|.+-
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEEcCCcce
Confidence 754321 11 1111 1122 1222344677778888888999 9999999999999999999998
Q ss_pred eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc---------cCCceEEEEecCCCEEEEEeCCcEEEEecC
Q 046773 386 NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE---------RIGEEVIAFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 386 v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g---------h~~~~V~a~s~d~~~lasg~D~~IklWDl~ 452 (453)
+.+++.-.....+++++. ||+||||++|++|..+++. |-+.+|-++.-+..+|++|....+-||.+.
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLr 235 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLR 235 (325)
T ss_pred eeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEecc
Confidence 888887445567788887 9999999999999988742 334446688899999999977889999875
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-12 Score=138.80 Aligned_cols=225 Identities=15% Similarity=0.174 Sum_probs=156.4
Q ss_pred eEEEEeCCCCEEEEEeecC--C-----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE-Eec
Q 046773 204 QLIFATLDGDIHVAVIDDV--A-----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV-FVG 275 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~~--g-----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~-~~g 275 (453)
.||.|..||.|-+||...- + +.++..|.|.|. .++|++... +.||||+.|+.|-|||++.-++ +.-
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~----gLDfN~~q~--nlLASGa~~geI~iWDlnn~~tP~~~ 155 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVL----GLDFNPFQG--NLLASGADDGEILIWDLNKPETPFTP 155 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCcee----eeeccccCC--ceeeccCCCCcEEEeccCCcCCCCCC
Confidence 3777888999999997651 1 456777888875 389999976 2499999999999999987542 110
Q ss_pred ccccCCcceeeeeeeeeeccceeEEEEcCC---ceEEEEcCCcEEEEECCCCceEEEEeeccCC--eEEEEEEecCC-EE
Q 046773 276 GDLTDHNTVMGWRMLTEFTEFVGRVRVTSH---ESAVACTSSRVITFDLRNQGMVLGERGYGRG--LYVTSVDVNAE-AY 349 (453)
Q Consensus 276 ~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~---~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~--~~v~~~~~~g~-~l 349 (453)
++ ....+.|.+|+.+-. =+++++.++++-||||+..+.++.+..+... ..+.+.+|++. .+
T Consensus 156 ~~-------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 156 GS-------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred CC-------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 00 012345556555421 1344456679999999987666555333322 33455666664 45
Q ss_pred EEEeCCCccccCcceEEEEEcCC-CeeEEEEEecCCCeeEEEEeeCC-CeEEEEeC-CeEEEEECCCCeEEEEecccCCc
Q 046773 350 IVVENRELENQNRRLAIVRRVDT-FEEVCRFSLRADRNVNVMGCMNQ-GYALMCVE-GVIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~t-g~~v~~l~~~~~~v~~~~~~~~~-~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
+++|.|. ....|.+||+.- -.++++++.|.-++.++.+|+.+ .++++|+- +.|-+||.+||+.+..|....++
T Consensus 223 ~~As~dd----~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW 298 (1049)
T KOG0307|consen 223 LVASGDD----SAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNW 298 (1049)
T ss_pred eeecCCC----CCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcc
Confidence 6666554 344899999763 34577788898889999999976 56666654 99999999999999999875566
Q ss_pred eEE--EEecCC-CEEEEE-eCCcEEEEecC
Q 046773 427 EVI--AFVGDD-RHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 427 ~V~--a~s~d~-~~lasg-~D~~IklWDl~ 452 (453)
+. .|.|-. ..++.+ -||+|-|+.+.
T Consensus 299 -~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 299 -CFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred -eeeeeecCCCcchhhhheeccceeeeeee
Confidence 65 455644 366666 89999998763
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-10 Score=106.14 Aligned_cols=231 Identities=15% Similarity=0.169 Sum_probs=147.2
Q ss_pred EEEecCCEEEEEeCCCcEEEEECCCC----------eEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEE
Q 046773 149 CLTLSDLYLACGFADGAVRLFDLTTR----------LHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAV 218 (453)
Q Consensus 149 ~lafs~~~LaSGS~D~TIrlWD~~tg----------~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd 218 (453)
+++.+.++|+.|+.+++|-+..+.+- ..+-++++|.+ .+..++|.++.|++|+. +.|+-|.
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg--------piy~~~f~d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG--------PIYYLAFHDDFLLSGGD-GLVYGWE 87 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC--------CeeeeeeehhheeeccC-ceEEEee
Confidence 44455578999999999999887532 12344555543 45667888777877654 7788777
Q ss_pred eecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 219 IDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 219 ~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
|+... + | -++-++|.+...... + .+. .-.||
T Consensus 88 W~E~~-------------e-----------------s---~~~K~lwe~~~P~~~-~-~~e--------------vPeIN 118 (325)
T KOG0649|consen 88 WNEEE-------------E-----------------S---LATKRLWEVKIPMQV-D-AVE--------------VPEIN 118 (325)
T ss_pred ehhhh-------------h-----------------h---ccchhhhhhcCcccc-C-ccc--------------CCccc
Confidence 76410 0 0 123466766543310 0 000 13467
Q ss_pred EEEEcC--CceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEE--ecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 299 RVRVTS--HESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVD--VNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 299 ~v~~s~--~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~--~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
++-++| +.++.|.+|+.+.-||+++|+..++.+||+. ++-++. -....+.+++.|| ++||||..|++
T Consensus 119 am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD--YvH~vv~R~~~~qilsG~EDG-------tvRvWd~kt~k 189 (325)
T KOG0649|consen 119 AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD--YVHSVVGRNANGQILSGAEDG-------TVRVWDTKTQK 189 (325)
T ss_pred eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc--eeeeeeecccCcceeecCCCc-------cEEEEeccccc
Confidence 777775 4578888999999999999875555688764 555553 2344678999999 99999999999
Q ss_pred eEEEEEe-------cCCCeeE-EEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe--cccCCceEEEEecCCCEEEEE-e
Q 046773 375 EVCRFSL-------RADRNVN-VMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF--RERIGEEVIAFVGDDRHVAAS-C 442 (453)
Q Consensus 375 ~v~~l~~-------~~~~v~~-~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL--~gh~~~~V~a~s~d~~~lasg-~ 442 (453)
+++.+.. +|++-+- .+...+...++ |++ ..+.||.+.+-+|..+| ++| |.-+.++...|+++ +
T Consensus 190 ~v~~ie~yk~~~~lRp~~g~wigala~~edWlv-CGgGp~lslwhLrsse~t~vfpipa~----v~~v~F~~d~vl~~G~ 264 (325)
T KOG0649|consen 190 HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLV-CGGGPKLSLWHLRSSESTCVFPIPAR----VHLVDFVDDCVLIGGE 264 (325)
T ss_pred eeEEeccccChhhcCcccCceeEEEeccCceEE-ecCCCceeEEeccCCCceEEEecccc----eeEeeeecceEEEecc
Confidence 9887632 2222110 11112344544 555 88999999988776665 344 55455666666665 6
Q ss_pred CCcEEEEec
Q 046773 443 GTNIHLWDF 451 (453)
Q Consensus 443 D~~IklWDl 451 (453)
-+-|.-|.+
T Consensus 265 g~~v~~~~l 273 (325)
T KOG0649|consen 265 GNHVQSYTL 273 (325)
T ss_pred ccceeeeee
Confidence 666666654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-09 Score=106.75 Aligned_cols=263 Identities=14% Similarity=0.124 Sum_probs=176.0
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEE---ecCCCCCccccccceEEEEEEcC-CeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRT---FRPQHSDRLGQFSRAVSGIIITD-SQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~t---l~gh~~~~~~~~s~~V~~i~f~g-~~LasgS~D~tIkvWd~ 219 (453)
|...+|-| ++|+|.+ -+-+-.|+++++...++ |+.+.+ ..|.+++|.+ ..++||..+++|-||+.
T Consensus 203 v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ek-------k~Vl~v~F~engdviTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREK-------KFVLCVTFLENGDVITGDSGGNILIWSK 274 (626)
T ss_pred EEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccc-------eEEEEEEEcCCCCEEeecCCceEEEEeC
Confidence 45566754 5777776 56789999999976544 444333 3688899974 46899999999999998
Q ss_pred ecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 220 DDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 220 ~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
.+.- ......|.+.|. .+..-.+|. |.||..|+.|-.||-.-.+ ++- -.|..-.+++.
T Consensus 275 ~~~~~~k~~~aH~ggv~----~L~~lr~Gt----llSGgKDRki~~Wd~~y~k-~r~------------~elPe~~G~iR 333 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVF----SLCMLRDGT----LLSGGKDRKIILWDDNYRK-LRE------------TELPEQFGPIR 333 (626)
T ss_pred CCceEEeEeeecCCceE----EEEEecCcc----EeecCccceEEeccccccc-ccc------------ccCchhcCCee
Confidence 6622 122225666664 355556665 6789999999999922221 110 01222335666
Q ss_pred EEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEE
Q 046773 299 RVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCR 378 (453)
Q Consensus 299 ~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~ 378 (453)
.|+-....++++.+.+.|--=.++++-. +...||+.+..-.+..|+.+.+++++-|+ .+++|+ +. +.+-+
T Consensus 334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~-~~v~gh~delwgla~hps~~q~~T~gqdk-------~v~lW~-~~-k~~wt 403 (626)
T KOG2106|consen 334 TVAEGKGDILVGTTRNFILQGTLENGFT-LTVQGHGDELWGLATHPSKNQLLTCGQDK-------HVRLWN-DH-KLEWT 403 (626)
T ss_pred EEecCCCcEEEeeccceEEEeeecCCce-EEEEecccceeeEEcCCChhheeeccCcc-------eEEEcc-CC-ceeEE
Confidence 6655444477777777776656666533 33357888887788889999999999999 999998 22 22222
Q ss_pred EEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 379 FSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 379 l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
... .+...++.|+|.+ .++.+.. |.--+-|.++... -++.--... +. +++|||.+||.| .|+.|.|+.+.
T Consensus 404 ~~~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l-v~~~~d~~~-ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 404 KII-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL-VTIHTDNEQ-LSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EEe-cCceeEeeccCcc-eEEEeeccceEEEEeccccee-EEEEecCCc-eEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 211 2336677788777 5566655 8888889998443 333222233 44 789999999999 99999999765
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-09 Score=111.83 Aligned_cols=210 Identities=10% Similarity=0.034 Sum_probs=124.3
Q ss_pred CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
.|.|||.+....+.++.+...+ ....|||||+.++.+...+.+..|.+||+.+|+... +..
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~----~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~---------------l~~ 240 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPL----MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---------------VAS 240 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCce----eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE---------------ccC
Confidence 4667776652123333222211 147999999974322112345689999999987211 111
Q ss_pred eccceeEEEEcCCceEEE---EcCC--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEE
Q 046773 293 FTEFVGRVRVTSHESAVA---CTSS--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIV 367 (453)
Q Consensus 293 h~~~v~~v~~s~~~~~va---s~d~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~I 367 (453)
....+..++++|++..++ +.++ .|.+||+++++.. ++..+.....-.+++|+|+.++..+..+ ...+|
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~------g~~~I 313 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQA------GRPQV 313 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCC------CCceE
Confidence 222344678999885333 2233 5999999987643 3321112233457889999887776543 04456
Q ss_pred E--EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecc-cCCceEEEEecCCCEEEE
Q 046773 368 R--RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRE-RIGEEVIAFVGDDRHVAA 440 (453)
Q Consensus 368 w--~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~g-h~~~~V~a~s~d~~~las 440 (453)
| +.++++ ...++..........++|++++++..+. ..|.+||+++|+.. .|.. +.+. --+|+|||+.|+.
T Consensus 314 y~~d~~~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~-~p~~SpDG~~i~~ 390 (429)
T PRK03629 314 YKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDE-TPSIAPNGTMVIY 390 (429)
T ss_pred EEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCC-CceECCCCCEEEE
Confidence 6 555554 3444444434456778999999876543 46899999998653 4432 2121 1278999999987
Q ss_pred E-eCCc---EEEEec
Q 046773 441 S-CGTN---IHLWDF 451 (453)
Q Consensus 441 g-~D~~---IklWDl 451 (453)
+ .|+. +.++++
T Consensus 391 ~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 391 SSSQGMGSVLNLVST 405 (429)
T ss_pred EEcCCCceEEEEEEC
Confidence 7 6654 566664
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.1e-11 Score=114.87 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=147.5
Q ss_pred cCCEEEEEeCCCcEEEEECCCCeEEEEecCCC--CCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCCc--ce
Q 046773 153 SDLYLACGFADGAVRLFDLTTRLHVRTFRPQH--SDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVAN--ET 226 (453)
Q Consensus 153 s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~--~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~--~~ 226 (453)
+-.+.|+.|.|.-|+|||.-||+....+++-. .+.. +.-+++|+ |.+|+ ++..++|||.|+..+|. ..
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~t-----aAhsL~Fs~DGeqlf-aGykrcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYT-----AAHSLQFSPDGEQLF-AGYKRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhh-----hheeEEecCCCCeEe-ecccceEEEeeccCCCCCCcc
Confidence 34689999999999999999999887775421 1111 11236665 66665 56889999999976661 22
Q ss_pred EEeeec-ceecCce--EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc
Q 046773 227 RTAHFG-SVMDDGV--LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 227 ~~~~~~-~v~~~~~--~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
+.+... ....-++ .++|+|-... .||.||...++-|.+-..++.+ .+|-+|.+-|..+++.
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~--~~a~gsY~q~~giy~~~~~~pl--------------~llggh~gGvThL~~~ 259 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSK--TLAVGSYGQRVGIYNDDGRRPL--------------QLLGGHGGGVTHLQWC 259 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCc--ceeeecccceeeeEecCCCCce--------------eeecccCCCeeeEEec
Confidence 222111 1111111 3789997542 4899999999988877666622 2345778889999998
Q ss_pred CCc--eEEEEc-CCcEEEEECCCCceEEE-Eeec---cCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC-Cee
Q 046773 304 SHE--SAVACT-SSRVITFDLRNQGMVLG-ERGY---GRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-FEE 375 (453)
Q Consensus 304 ~~~--~~vas~-d~tIrlWDl~t~~~~~~-~~g~---~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~ 375 (453)
+++ +++++- |..|-.||++.-+.+.. +..| +.+-....+++.++.|++++.|| .|++||..+ |.+
T Consensus 260 edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG-------~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 260 EDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG-------SVRVWDLKDLGNE 332 (406)
T ss_pred cCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc-------cEEEEecCCCCCc
Confidence 655 566554 46899999997543322 2223 22222344678889999998999 999999998 676
Q ss_pred EEEEEecCCCeeEEEEeeCCCeEEEEeC
Q 046773 376 VCRFSLRADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~~lls~s~ 403 (453)
+..+..+.+.+..+.++|---.++++++
T Consensus 333 ~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 333 VSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ccccccccccccceecCcccceeeeccC
Confidence 7777667777777777776444455554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=120.50 Aligned_cols=226 Identities=12% Similarity=0.126 Sum_probs=147.1
Q ss_pred EeCCCCEEEEEeecCCcceEEeeecceecCceE--EEEeCC-CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 208 ATLDGDIHVAVIDDVANETRTAHFGSVMDDGVL--IDFTGC-SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 208 gS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~--v~Fs~d-g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
++..+.|-|++++.+|.-+-.+ ...+.+.... ++++|= -+. ||.+..|+.|+||.+.++-.-. ....|+
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv-~p~l~Ngt~vtDl~WdPFD~~r---LAVa~ddg~i~lWr~~a~gl~e--~~~tPe-- 670 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGV-MPGLFNGTLVTDLHWDPFDDER---LAVATDDGQINLWRLTANGLPE--NEMTPE-- 670 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccc-ccccccCceeeecccCCCChHH---eeecccCceEEEEEeccCCCCc--ccCCcc--
Confidence 4557788899998766211111 1111111111 233332 222 8899999999999998754111 011122
Q ss_pred eeeeeeeeeccceeEEEEcC---CceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccC
Q 046773 285 MGWRMLTEFTEFVGRVRVTS---HESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQN 361 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~---~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~ 361 (453)
..|+.|.+.+.+++|+| +-+++++.|.||+|||++++..-..+.||+.++.-.+.+++|..++++..||
T Consensus 671 ---~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg----- 742 (1012)
T KOG1445|consen 671 ---KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG----- 742 (1012)
T ss_pred ---eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc-----
Confidence 34789999999999997 4467888999999999999865556789999988888999999999999999
Q ss_pred cceEEEEEcCCCe-eEEEEEec-CCCeeEEEEeeCCCeEEEEe----C-CeEEEEECCC--CeEEEEecccC--CceEEE
Q 046773 362 RRLAIVRRVDTFE-EVCRFSLR-ADRNVNVMGCMNQGYALMCV----E-GVIRVWEVEG--GEYMYSFRERI--GEEVIA 430 (453)
Q Consensus 362 ~~~i~Iw~~~tg~-~v~~l~~~-~~~v~~~~~~~~~~~lls~s----~-~tIrlWD~~t--G~~l~tL~gh~--~~~V~a 430 (453)
+++|++-..++ ++++-.+- +..--.+.+.-++++++..+ + ..|.++|.++ +..|+++.--. ...|-.
T Consensus 743 --~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~ 820 (1012)
T KOG1445|consen 743 --TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPH 820 (1012)
T ss_pred --eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcccccc
Confidence 99999876543 33321110 01122345556888877543 2 7899999886 56676652111 111113
Q ss_pred EecCCCE-EEEE-eCCcEEEEec
Q 046773 431 FVGDDRH-VAAS-CGTNIHLWDF 451 (453)
Q Consensus 431 ~s~d~~~-lasg-~D~~IklWDl 451 (453)
..+|... +++| -|..|.++.+
T Consensus 821 YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 821 YDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred ccCCCceEEEecCCCceEEEEEe
Confidence 3456665 4788 9999999875
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-09 Score=109.36 Aligned_cols=208 Identities=11% Similarity=0.039 Sum_probs=122.7
Q ss_pred CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEee---CCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL---AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS---~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
+|.+||.+....+.++.+...+ ...+|+|||+. |+..+ .+..|.+||+.+++...
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v----~~p~wSpDg~~---la~~s~~~~~~~l~~~dl~~g~~~~--------------- 242 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPI----LSPAWSPDGKK---LAYVSFERGRSAIYVQDLATGQREL--------------- 242 (433)
T ss_pred EEEEECCCCCCceEeecCCCcc----ccccCCCCCCE---EEEEecCCCCcEEEEEECCCCCEEE---------------
Confidence 5778887641133333332222 13689999997 44444 34579999999887321
Q ss_pred eeeeccceeEEEEcCCce--EE-EEcCC--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeC-CCccccCcc
Q 046773 290 LTEFTEFVGRVRVTSHES--AV-ACTSS--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVEN-RELENQNRR 363 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~--~v-as~d~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~-dg~~~~~~~ 363 (453)
+..+.....+++|+|++. +. .+.++ .|.+||+.++++ ..+..+.....-.+++++|+.++..+. ++ ..
T Consensus 243 l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g-----~~ 316 (433)
T PRK04922 243 VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGG-----RP 316 (433)
T ss_pred eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCC-----Cc
Confidence 112223334678898774 22 24343 599999998764 333222222223578888988877664 33 01
Q ss_pred eEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEec-ccCCceEEEEecCCCEE
Q 046773 364 LAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFR-ERIGEEVIAFVGDDRHV 438 (453)
Q Consensus 364 ~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~-gh~~~~V~a~s~d~~~l 438 (453)
.+.++++++++ ...++..+.......++|++++++..+. ..|.+||+.+|+.. .|. ++... --+++|||+.|
T Consensus 317 ~iy~~dl~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~-~p~~spdG~~i 393 (433)
T PRK04922 317 QIYRVAASGGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDE-SPSFAPNGSMV 393 (433)
T ss_pred eEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCC-CceECCCCCEE
Confidence 34445666664 3344444444446788999999876543 37999999988754 443 22111 11789999988
Q ss_pred EEE-e-CC--cEEEEec
Q 046773 439 AAS-C-GT--NIHLWDF 451 (453)
Q Consensus 439 asg-~-D~--~IklWDl 451 (453)
+.. . .+ .|.++|+
T Consensus 394 ~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 394 LYATREGGRGVLAAVST 410 (433)
T ss_pred EEEEecCCceEEEEEEC
Confidence 755 3 23 4556654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.3e-09 Score=104.79 Aligned_cols=220 Identities=15% Similarity=0.111 Sum_probs=132.4
Q ss_pred EEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEe-eCCCeEEEeeCC-CCc-EEecccccCC
Q 046773 206 IFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAG-LAGRAFHIWDRQ-AEE-VFVGGDLTDH 281 (453)
Q Consensus 206 asgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSg-S~D~tIrvWD~~-tg~-~~~g~~l~~~ 281 (453)
++.+.|++|.+|++++.| +..+..-. ...+...++|+||+++ |+.+ ..++.|.+|++. +|+ .+..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~---lyv~~~~~~~i~~~~~~~~g~l~~~~------ 74 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRH---LYVGVRPEFRVLSYRIADDGALTFAA------ 74 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCE---EEEEECCCCcEEEEEECCCCceEEee------
Confidence 334678999999996434 22221111 0112234899999997 4444 458899999997 344 2211
Q ss_pred cceeeeeeeeeeccceeEEEEcCCc--eEEEEc-CCcEEEEECCCCceE----EEEeeccCCeEEEEEEecCCEEEEEeC
Q 046773 282 NTVMGWRMLTEFTEFVGRVRVTSHE--SAVACT-SSRVITFDLRNQGMV----LGERGYGRGLYVTSVDVNAEAYIVVEN 354 (453)
Q Consensus 282 ~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~-d~tIrlWDl~t~~~~----~~~~g~~~~~~v~~~~~~g~~l~s~s~ 354 (453)
.. ........+.|+|++ +++++. ++.|.+||+++.+.+ ....+.. .....+++|+++.+++++.
T Consensus 75 -------~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 75 -------ES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE-GCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred -------ee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC-cccEeEeCCCCCEEEEeeC
Confidence 00 011234568899876 344443 578999999753221 1111211 1122467888888766554
Q ss_pred -CCccccCcceEEEEEcCCCeeEE-----EEEe-cCCCeeEEEEeeCCCeEEEEeC--CeEEEEECC--CC--eEEEEec
Q 046773 355 -RELENQNRRLAIVRRVDTFEEVC-----RFSL-RADRNVNVMGCMNQGYALMCVE--GVIRVWEVE--GG--EYMYSFR 421 (453)
Q Consensus 355 -dg~~~~~~~~i~Iw~~~tg~~v~-----~l~~-~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~--tG--~~l~tL~ 421 (453)
++ .|.||++++...+. .... .+...+.++++++++++.++.. ++|.+||+. ++ +.++++.
T Consensus 146 ~~~-------~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 146 KED-------RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred CCC-------EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 35 89999998632221 1111 1233567899999999877654 999999997 34 3455543
Q ss_pred ccC------CceE-EEEecCCCEEEEE--eCCcEEEEecC
Q 046773 422 ERI------GEEV-IAFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 422 gh~------~~~V-~a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
.+. .... ..|+||+++|.++ .+++|.+|++.
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 221 1101 2578999998776 58999999873
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-10 Score=108.64 Aligned_cols=242 Identities=13% Similarity=0.129 Sum_probs=164.4
Q ss_pred EEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE-cCCeEEEEeCCCCEEEEEeecC--
Q 046773 147 CRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII-TDSQLIFATLDGDIHVAVIDDV-- 222 (453)
Q Consensus 147 v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f-~g~~LasgS~D~tIkvWd~~~~-- 222 (453)
|+|+-|.. ++|.+|..-|.|++|+++|.+.+-.+++++. ..|..++. -++.|.+-+.|.++.+|++...
T Consensus 17 v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-------~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 17 VTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGR-------LFITNLQSIPNDSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred heehhhccchhhhcccccceEEEEEeecCccchhhhhhcc-------ceeeceeecCCcchhhcCCCceEEEEEccCcce
Confidence 78888875 5799999999999999999998888886654 25555653 3577888888888889987540
Q ss_pred -----------CcceEEeeec------------------c-----------eecC------ceEEEEe---CCCceeeEE
Q 046773 223 -----------ANETRTAHFG------------------S-----------VMDD------GVLIDFT---GCSRYWVGL 253 (453)
Q Consensus 223 -----------g~~~~~~~~~------------------~-----------v~~~------~~~v~Fs---~dg~~~~~L 253 (453)
|......+.. + +..+ +..+.|+ .++.+. .|
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~-ll 168 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF-LL 168 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE-EE
Confidence 0000000000 0 0000 0012222 224442 47
Q ss_pred EEeeCCCeEEEeeCCCCc-EEecccccCCcceeeee---eeeeeccceeEEEEcC--CceEEEEcCCcEEEEECC--CCc
Q 046773 254 YAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWR---MLTEFTEFVGRVRVTS--HESAVACTSSRVITFDLR--NQG 325 (453)
Q Consensus 254 aSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~---~l~~h~~~v~~v~~s~--~~~~vas~d~tIrlWDl~--t~~ 325 (453)
+.|-.++.|-+||+.++. ++. + ...|. ....|..+|.+|.|.+ ++-++++.+..+-.|.+. ++.
T Consensus 169 laGyEsghvv~wd~S~~~~~~~---~-----~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKIIQ---L-----PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred EEeccCCeEEEEEccCCceeec---c-----ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 789999999999999985 221 0 01122 2357889999998874 334666667778888875 344
Q ss_pred eEEE-E-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC
Q 046773 326 MVLG-E-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 326 ~~~~-~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~ 403 (453)
+.++ + .....++.=..+-+|++.+++|+-|+ -|||+.|.|.+++..++.|..++..++|+|+...+++++-
T Consensus 241 lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~-------RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRPDGKILATAGWDH-------RIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccccceEEecCCCccceEEccCCcEEeecccCC-------cEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 4332 1 11111222246779999999999999 9999999999999999999999999999999777766665
Q ss_pred -CeEEEEEC
Q 046773 404 -GVIRVWEV 411 (453)
Q Consensus 404 -~tIrlWD~ 411 (453)
.+|-||++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 99999986
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=116.29 Aligned_cols=270 Identities=16% Similarity=0.136 Sum_probs=172.5
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCC-CCccccccceEEEEEEc-CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQH-SDRLGQFSRAVSGIIIT-DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~-~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIkvWd~~~~ 222 (453)
|..|.|+ ++.|+|||.|.+|-+||..+++....|.+.| ...|. + .=|-|+ .+.|++.+.|+.+++-.+...
T Consensus 145 VntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQ----a-KFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 145 VNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQ----A-KFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred cceeeecccCceeeccCccceEEeehhhccCcccccccccccchhh----h-hccCCCCCcCceeccccCceeeeeeccc
Confidence 7889998 5899999999999999999999877776433 21111 0 001233 456999999999998765432
Q ss_pred C--cce--EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---EEecccccCCcceeeeeeeeeecc
Q 046773 223 A--NET--RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---VFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 223 g--~~~--~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
| ..+ +.-|.+.+. .++.-|+... .|.|++.|+.|.=.|++++. .+... ..+..
T Consensus 220 ~~~e~t~rl~~h~g~vh----klav~p~sp~--~f~S~geD~~v~~~Dlr~~~pa~~~~cr--------------~~~~~ 279 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVH----KLAVEPDSPK--PFLSCGEDAVVFHIDLRQDVPAEKFVCR--------------EADEK 279 (559)
T ss_pred cceecceecccccCccc----eeeecCCCCC--cccccccccceeeeeeccCCccceeeee--------------ccCCc
Confidence 3 223 223555543 3666666654 58899999999999998876 22210 01111
Q ss_pred ---ceeEEEEcCCc---eEEEEcCCcEEEEECCCCc-----------eEEEEeeccCCeEEEEEEec--C-CEEEEEeCC
Q 046773 296 ---FVGRVRVTSHE---SAVACTSSRVITFDLRNQG-----------MVLGERGYGRGLYVTSVDVN--A-EAYIVVENR 355 (453)
Q Consensus 296 ---~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~-----------~~~~~~g~~~~~~v~~~~~~--g-~~l~s~s~d 355 (453)
..+.++++|.. .++++.|.-+|++|.+.-. |.+.+.. ...+.|+++.++ + +.|++- .|
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSY-nD 357 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASY-ND 357 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCccceeeee-cc
Confidence 12456666543 5677777788999986431 1111111 223445666555 3 334332 23
Q ss_pred CccccCcceEEEEEcCC--C----------eeEE-EEEecCCC--eeEEEEe-eCCCeEEEEeC-CeEEEEECCCCeEEE
Q 046773 356 ELENQNRRLAIVRRVDT--F----------EEVC-RFSLRADR--NVNVMGC-MNQGYALMCVE-GVIRVWEVEGGEYMY 418 (453)
Q Consensus 356 g~~~~~~~~i~Iw~~~t--g----------~~v~-~l~~~~~~--v~~~~~~-~~~~~lls~s~-~tIrlWD~~tG~~l~ 418 (453)
. .|.++.-+- | ..+. ..++|.+. |..+-|. |...|++++|+ |.|-|||-.+++.|+
T Consensus 358 e-------~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 358 E-------DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred c-------ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 3 566653321 2 1111 14555433 5566554 56789999999 999999999999999
Q ss_pred EecccCCceEEEEecCC--CEEEEE-eCCcEEEEec
Q 046773 419 SFRERIGEEVIAFVGDD--RHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 419 tL~gh~~~~V~a~s~d~--~~lasg-~D~~IklWDl 451 (453)
-++|-... |+++-|-. ..|||+ -|.-||||--
T Consensus 431 ~MegDr~V-VNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 431 FMEGDRHV-VNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred Hhhcccce-EeccCCCCCCchhhccCCccceeeecC
Confidence 99986665 99997644 578887 8999999953
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=112.67 Aligned_cols=257 Identities=10% Similarity=0.097 Sum_probs=163.6
Q ss_pred EEEEEe--cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTL--SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~laf--s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~ 222 (453)
|+.++| +|..|+-+. |..+-|+|+..|..+.||+||.. .|.++++ +|.+.|||+.|+.+.||+-.-.
T Consensus 15 i~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKD--------tVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKD--------TVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred hheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccc--------eEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 455666 455555554 44688999999999999999764 6788876 5899999999999999986543
Q ss_pred CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 223 ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 223 g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
| -..-.|...+- .+.|.|..+. |+|+|- ...-+|..+.+.... ......+++.+.
T Consensus 86 G-~LkYSH~D~IQ----CMsFNP~~h~---LasCsL-sdFglWS~~qK~V~K----------------~kss~R~~~CsW 140 (1081)
T KOG1538|consen 86 G-ILKYSHNDAIQ----CMSFNPITHQ---LASCSL-SDFGLWSPEQKSVSK----------------HKSSSRIICCSW 140 (1081)
T ss_pred c-eeeeccCCeee----EeecCchHHH---hhhcch-hhccccChhhhhHHh----------------hhhheeEEEeee
Confidence 4 22223544332 4789999885 788774 346788876654211 011245666777
Q ss_pred cCCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC-------
Q 046773 303 TSHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF------- 373 (453)
Q Consensus 303 s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg------- 373 (453)
..++. +++-.++||.|=+-.-....+..+.-+....|.++.+++.. ..| .+-++-|-||...
T Consensus 141 tnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~s-----g~G----~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSS-----GEG----RNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCC-----CCC----ccceEEEEeccceeEEEEec
Confidence 77775 44456889887764322222223222334456665554321 111 0115556566532
Q ss_pred -eeE---EEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCc
Q 046773 374 -EEV---CRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTN 445 (453)
Q Consensus 374 -~~v---~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~ 445 (453)
+-+ .++.+.| ..+..+++|.+++.+++ +.++++- ..|-.|.|+.. .+.+|| ++.|+++.++.| .|||
T Consensus 212 G~~Igk~r~L~FdP---~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 212 GKQIGKDRALNFDP---CCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE-QDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred ceeecccccCCCCc---hhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc-cceeEEEEEEccCCceEEEEEccCe
Confidence 111 1122222 23456789999998877 8899884 45888888865 444499 556999999999 9999
Q ss_pred EEEEec
Q 046773 446 IHLWDF 451 (453)
Q Consensus 446 IklWDl 451 (453)
|-.+++
T Consensus 287 iACyNl 292 (1081)
T KOG1538|consen 287 IACYNL 292 (1081)
T ss_pred eehhhh
Confidence 987664
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-08 Score=105.63 Aligned_cols=227 Identities=9% Similarity=0.010 Sum_probs=135.1
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeC---CCCEEEEEeecCC-cceEEeeecceec
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATL---DGDIHVAVIDDVA-NETRTAHFGSVMD 236 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~---D~tIkvWd~~~~g-~~~~~~~~~~v~~ 236 (453)
...|.+||...+.. +.+..+.. .+.. +++||+.|++.+. +..|.+|++.+ | ...+....+..
T Consensus 178 ~~~l~~~d~dg~~~-~~lt~~~~--------~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~~~l~~~~~~~-- 245 (429)
T PRK03629 178 PYELRVSDYDGYNQ-FVVHRSPQ--------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVRQVASFPRHN-- 245 (429)
T ss_pred ceeEEEEcCCCCCC-EEeecCCC--------ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCeEEccCCCCCc--
Confidence 44799999986654 34432221 2233 4557888988764 34588888876 5 22222121211
Q ss_pred CceEEEEeCCCceeeEEEEeeCC--CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc
Q 046773 237 DGVLIDFTGCSRYWVGLYAGLAG--RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT 312 (453)
Q Consensus 237 ~~~~v~Fs~dg~~~~~LaSgS~D--~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~ 312 (453)
..+.|+|||+.++ ++.+.+ ..|.+||+++++... +..+...+....++|++. +.++.
T Consensus 246 --~~~~~SPDG~~La--~~~~~~g~~~I~~~d~~tg~~~~---------------lt~~~~~~~~~~wSPDG~~I~f~s~ 306 (429)
T PRK03629 246 --GAPAFSPDGSKLA--FALSKTGSLNLYVMDLASGQIRQ---------------VTDGRSNNTEPTWFPDSQNLAYTSD 306 (429)
T ss_pred --CCeEECCCCCEEE--EEEcCCCCcEEEEEECCCCCEEE---------------ccCCCCCcCceEECCCCCEEEEEeC
Confidence 1378999999743 333334 358899999887321 122223455678888874 33344
Q ss_pred C-CcEEEE--ECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 313 S-SRVITF--DLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 313 d-~tIrlW--Dl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
+ +..+|| |+.+++. .++..........+++|+|+.++..+.++ ....+.++++++++. ..++. .......
T Consensus 307 ~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~----g~~~I~~~dl~~g~~-~~Lt~-~~~~~~p 379 (429)
T PRK03629 307 QAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG----GQQHIAKQDLATGGV-QVLTD-TFLDETP 379 (429)
T ss_pred CCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC----CCceEEEEECCCCCe-EEeCC-CCCCCCc
Confidence 3 344555 7776543 33322222233467889999987766543 122677888888763 33432 1123456
Q ss_pred EEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCCceEE
Q 046773 390 MGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIGEEVI 429 (453)
Q Consensus 390 ~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~ 429 (453)
.++||+++++.++. ..+.++++ +|+..+.|.+|.+. +.
T Consensus 380 ~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~-~~ 421 (429)
T PRK03629 380 SIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQ-VK 421 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCC-cC
Confidence 78899999887664 35788888 57777888887665 44
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.9e-09 Score=101.64 Aligned_cols=189 Identities=8% Similarity=0.101 Sum_probs=115.3
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeEEEEc-CC-c--eEEEEcCCc
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT-SH-E--SAVACTSSR 315 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s-~~-~--~~vas~d~t 315 (453)
|.|++-||. +|++|.|.+|+|||.++.. .... + ...+.|.+.|.+|... |. + +++.|-|+|
T Consensus 19 Vs~D~~GRR---mAtCSsDq~vkI~d~~~~s~~W~~---T--------s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 19 VSFDFYGRR---MATCSSDQTVKIWDSTSDSGTWSC---T--------SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred eeecccCce---eeeccCCCcEEEEeccCCCCceEE---e--------eeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 789999997 8999999999999986544 2110 0 1235777888888764 32 2 344466899
Q ss_pred EEEEECC-----CCc--eE--EEEeeccCCeEEEEEEecC--CEEEEEeCCCccccCcceEEEEEcCCCeeEEE------
Q 046773 316 VITFDLR-----NQG--MV--LGERGYGRGLYVTSVDVNA--EAYIVVENRELENQNRRLAIVRRVDTFEEVCR------ 378 (453)
Q Consensus 316 IrlWDl~-----t~~--~~--~~~~g~~~~~~v~~~~~~g--~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~------ 378 (453)
++||.=. ..+ -. .++......+.-.+|.|.. =++++++.|| ++||++....-.+..
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG-------~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG-------ILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc-------EEEEEecCCccccccchhhhh
Confidence 9999752 111 11 1122222233334455543 3568889999 999998775422221
Q ss_pred EE---ecCCC----eeEEEEee---CCCeEEEEeC------CeEEEEECCCC--eE--EEEecccCCceEE--EEec---
Q 046773 379 FS---LRADR----NVNVMGCM---NQGYALMCVE------GVIRVWEVEGG--EY--MYSFRERIGEEVI--AFVG--- 433 (453)
Q Consensus 379 l~---~~~~~----v~~~~~~~---~~~~lls~s~------~tIrlWD~~tG--~~--l~tL~gh~~~~V~--a~s~--- 433 (453)
++ .-|.. -..+..++ ..-+++.+++ +.++||.-..+ ++ +.+|.+|++. |. +|+|
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp-I~di~wAPn~G 236 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP-IRDISWAPNIG 236 (361)
T ss_pred hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc-ceeeeeccccC
Confidence 11 11111 11233332 1234455543 58999977653 44 4578899999 98 5666
Q ss_pred -CCCEEEEE-eCCcEEEEecC
Q 046773 434 -DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 434 -d~~~lasg-~D~~IklWDl~ 452 (453)
+...||.+ .|| |+||.++
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred CceeeEEEeecCc-EEEEEEe
Confidence 33468888 999 9999986
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-10 Score=111.18 Aligned_cols=187 Identities=12% Similarity=0.098 Sum_probs=118.9
Q ss_pred EEEcCCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecc
Q 046773 198 IIITDSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGG 276 (453)
Q Consensus 198 i~f~g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~ 276 (453)
+.++|..|++|..|+++|||+|..-- +.....|.+.|. .++|||||++ |+|-+.| ..+||++++|-.+.
T Consensus 152 f~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~----DL~FS~dgk~---lasig~d-~~~VW~~~~g~~~a-- 221 (398)
T KOG0771|consen 152 FNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK----DLDFSPDGKF---LASIGAD-SARVWSVNTGAALA-- 221 (398)
T ss_pred EcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc----cceeCCCCcE---EEEecCC-ceEEEEeccCchhh--
Confidence 34467899999999999999986511 122233445543 3899999997 7888888 89999999995221
Q ss_pred cccCCcceeeeeeeeeeccceeEEEEcCCc-----eEEEEc--CCcEEEEECCCCce--EEE---E-eeccCCeEEEEEE
Q 046773 277 DLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-----SAVACT--SSRVITFDLRNQGM--VLG---E-RGYGRGLYVTSVD 343 (453)
Q Consensus 277 ~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-----~~vas~--d~tIrlWDl~t~~~--~~~---~-~g~~~~~~v~~~~ 343 (453)
.+++- +-.....+++|+-+. .+.++. .+.|++||+..-.. .++ . ..+ ..+...+++
T Consensus 222 ~~t~~----------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~VS 290 (398)
T KOG0771|consen 222 RKTPF----------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLAVS 290 (398)
T ss_pred hcCCc----------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEEEc
Confidence 00100 000112245665443 333332 25677777653211 111 1 111 134445677
Q ss_pred ecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE-EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 344 VNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF-SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 344 ~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
.+|+.++.++.|| .+-|.+..+-++++-+ ..|..-|..+.|+|+.+++++.+. .++.|--++
T Consensus 291 ~dGkf~AlGT~dG-------sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 291 DDGKFLALGTMDG-------SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CCCcEEEEeccCC-------cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 8899999999999 9999988876665544 334455889999999999887665 666665544
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-09 Score=110.74 Aligned_cols=250 Identities=12% Similarity=0.117 Sum_probs=156.2
Q ss_pred EEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEE
Q 046773 176 HVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGL 253 (453)
Q Consensus 176 ~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~L 253 (453)
|-..++||.+ .|++|+. +|..|+|||.|||+|||.+.+ |...++...+.++ ..|+|+|.+...+ |
T Consensus 392 ~~lvyrGHtg--------~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~~d~~I---~~vaw~P~~~~~v-L 458 (733)
T KOG0650|consen 392 CALVYRGHTG--------LVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQFDSEI---RSVAWNPLSDLCV-L 458 (733)
T ss_pred eeeeEeccCC--------eEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEeeccee---EEEEecCCCCcee-E
Confidence 3445667654 6788765 578899999999999999998 7444443333322 2599999998764 4
Q ss_pred EEeeCCCeEEEeeCCCCc---------EEecc-cccC-Ccceeee------------eeeeeeccceeEEEEcCCce--E
Q 046773 254 YAGLAGRAFHIWDRQAEE---------VFVGG-DLTD-HNTVMGW------------RMLTEFTEFVGRVRVTSHES--A 308 (453)
Q Consensus 254 aSgS~D~tIrvWD~~tg~---------~~~g~-~l~~-~~~v~~w------------~~l~~h~~~v~~v~~s~~~~--~ 308 (453)
|.+-. .++-|-|..=|. +|.-. .-.. +.++..| +....|...|++|..+.++. +
T Consensus 459 AvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla 537 (733)
T KOG0650|consen 459 AVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA 537 (733)
T ss_pred EEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence 54433 336665544442 11100 0000 1122334 23446677888888887664 3
Q ss_pred EEEcC---CcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC
Q 046773 309 VACTS---SRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD 384 (453)
Q Consensus 309 vas~d---~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~ 384 (453)
+.+.+ ..|-|.+|........+ .-++ .+....|.|.--.+++++. . .++|+|+...+.+..+.-..-
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq-~-------~vRiYdL~kqelvKkL~tg~k 608 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQ-R-------SVRIYDLSKQELVKKLLTGSK 608 (733)
T ss_pred EeccCCCcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEec-c-------ceEEEehhHHHHHHHHhcCCe
Confidence 33333 45889999865332222 1111 1223456776667776653 2 689999876544443333334
Q ss_pred CeeEEEEeeCCCeEEEEeC-CeEEEEECCCC-eEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEE
Q 046773 385 RNVNVMGCMNQGYALMCVE-GVIRVWEVEGG-EYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG-~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklW 449 (453)
++.++..++.|..++.++- +.+-..|+.-+ +..++|.-|... |+ +|.+.-..++|+ .|+++.|+
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a-vr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA-VRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh-hhhhhhccccceeeeecCCCcEEEE
Confidence 5777788888888887776 88877898754 666788888877 77 455666678999 88999876
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-08 Score=106.85 Aligned_cols=224 Identities=12% Similarity=0.031 Sum_probs=133.9
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCCC---CEEEEEeecCC-cceEEeeecceec
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDG---DIHVAVIDDVA-NETRTAHFGSVMD 236 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~---tIkvWd~~~~g-~~~~~~~~~~v~~ 236 (453)
..+|.|||.. |.+.+.+..+.. .+.+ .++||+.|++.+.++ .|.+||+.+ | ...+....+..
T Consensus 183 ~~~l~i~D~~-g~~~~~lt~~~~--------~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~~~l~~~~g~~-- 250 (433)
T PRK04922 183 RYALQVADSD-GYNPQTILRSAE--------PILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQRELVASFRGIN-- 250 (433)
T ss_pred eEEEEEECCC-CCCceEeecCCC--------ccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCEEEeccCCCCc--
Confidence 3579999985 555566654432 1222 345688999987543 588999876 5 22222222211
Q ss_pred CceEEEEeCCCceeeEEEEeeCCC--eEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc
Q 046773 237 DGVLIDFTGCSRYWVGLYAGLAGR--AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT 312 (453)
Q Consensus 237 ~~~~v~Fs~dg~~~~~LaSgS~D~--tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~ 312 (453)
..++|+|||+.+ +++.+.++ .|.+||+++++.. .+..+......+.|+|++. +.++.
T Consensus 251 --~~~~~SpDG~~l--~~~~s~~g~~~Iy~~d~~~g~~~---------------~lt~~~~~~~~~~~spDG~~l~f~sd 311 (433)
T PRK04922 251 --GAPSFSPDGRRL--ALTLSRDGNPEIYVMDLGSRQLT---------------RLTNHFGIDTEPTWAPDGKSIYFTSD 311 (433)
T ss_pred --cCceECCCCCEE--EEEEeCCCCceEEEEECCCCCeE---------------ECccCCCCccceEECCCCCEEEEEEC
Confidence 136899999974 34445444 6999999998732 1223333344578888764 33343
Q ss_pred C-Cc--EEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 313 S-SR--VITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 313 d-~t--IrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
. +. |.++|+.+++. .++..++......+++|+|+.++..+.++ +...+.+|+..+++.. .++. .......
T Consensus 312 ~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~----~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p 384 (433)
T PRK04922 312 RGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSG----GQYRIAVMDLSTGSVR-TLTP-GSLDESP 384 (433)
T ss_pred CCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCC----CceeEEEEECCCCCeE-ECCC-CCCCCCc
Confidence 2 33 66778877653 22222222222357899999887765533 1236888998887644 3332 2234456
Q ss_pred EEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCC
Q 046773 390 MGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIG 425 (453)
Q Consensus 390 ~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~ 425 (453)
.+++|+++++..+. ..|.++|+. |+..+.+..+.+
T Consensus 385 ~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g 423 (433)
T PRK04922 385 SFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADG 423 (433)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCC
Confidence 78999998876553 568888885 445555554433
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.8e-09 Score=106.22 Aligned_cols=188 Identities=10% Similarity=0.105 Sum_probs=136.3
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcC-Cc
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTS-SR 315 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d-~t 315 (453)
+|.|+|.-.. |.+++.|+++||+-+.... .+. +.+.=-..|+.+.+|.|++. +.+++. .-
T Consensus 218 sv~FHp~~pl---llvaG~d~~lrifqvDGk~N~~l-------------qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 218 SVQFHPTAPL---LLVAGLDGTLRIFQVDGKVNPKL-------------QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred EEEecCCCce---EEEecCCCcEEEEEecCccChhh-------------eeeeeccCccceeeecCCCceEEEecccceE
Confidence 4889998774 7789999999999986554 110 11111136788889998775 333333 45
Q ss_pred EEEEECCCCceEEE--EeeccCC-eEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEe
Q 046773 316 VITFDLRNQGMVLG--ERGYGRG-LYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGC 392 (453)
Q Consensus 316 IrlWDl~t~~~~~~--~~g~~~~-~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~ 392 (453)
...|||.+.+..+. ..|+.+. ..-..++++++.++.++..| -|.|--..|++.+.++...+ .+..+.|+
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-------~I~lLhakT~eli~s~KieG-~v~~~~fs 353 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-------HIHLLHAKTKELITSFKIEG-VVSDFTFS 353 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc-------eEEeehhhhhhhhheeeecc-EEeeEEEe
Confidence 78999999764322 2344321 12234678889999999999 88888888888888887543 47788899
Q ss_pred eCCCeEEEEeC-CeEEEEECCCCeEEEEeccc--CCceEEEEecCCCEEEEE-eCCcEEEEec
Q 046773 393 MNQGYALMCVE-GVIRVWEVEGGEYMYSFRER--IGEEVIAFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 393 ~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh--~~~~V~a~s~d~~~lasg-~D~~IklWDl 451 (453)
.+++.++++++ |.|.+||+.+..|++++..- ....-.+.++++.++|+| .-|-|.|+|.
T Consensus 354 Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 354 SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 99999888877 99999999999999998522 112122677999999999 7799999984
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-08 Score=104.01 Aligned_cols=199 Identities=12% Similarity=0.010 Sum_probs=119.3
Q ss_pred CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEee---CCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL---AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS---~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
.|.++|.++...+.++.+...+. ...|+|||+.+ +..+ .+..|.+||+++|+.. .
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~----~p~wSpDG~~l---ay~s~~~g~~~i~~~dl~~g~~~---------------~ 240 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVL----TPRFSPNRQEI---TYMSYANGRPRVYLLDLETGQRE---------------L 240 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeE----eeEECCCCCEE---EEEEecCCCCEEEEEECCCCcEE---------------E
Confidence 46666665411344444433332 47899999973 3333 3578999999998731 1
Q ss_pred eeeeccceeEEEEcCCce--EEE-EcCC--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcce
Q 046773 290 LTEFTEFVGRVRVTSHES--AVA-CTSS--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRL 364 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~--~va-s~d~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~ 364 (453)
+..+...+...+++|++. +.+ +.++ .|.+||++++.. .++..+.......+++|+|+.++..+.... ...
T Consensus 241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----~~~ 315 (435)
T PRK05137 241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSG----SPQ 315 (435)
T ss_pred eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCC----CCe
Confidence 223334556678898874 223 3333 488889998754 333322222233578899998887764320 125
Q ss_pred EEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEec-ccCCceEEEEecCCCEEE
Q 046773 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFR-ERIGEEVIAFVGDDRHVA 439 (453)
Q Consensus 365 i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~-gh~~~~V~a~s~d~~~la 439 (453)
+.+++.++++ +..++..+..+....++|++++++..+. ..|.+||+.++.. +.+. ++... --+|+|||+.|+
T Consensus 316 Iy~~d~~g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~-~p~~spDG~~i~ 392 (435)
T PRK05137 316 LYVMNADGSN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVE-GPTWAPNGRVIM 392 (435)
T ss_pred EEEEECCCCC-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCC-CCeECCCCCEEE
Confidence 6666776554 4455544444556778999999886643 4788999876543 3342 22111 127899999887
Q ss_pred EE
Q 046773 440 AS 441 (453)
Q Consensus 440 sg 441 (453)
..
T Consensus 393 ~~ 394 (435)
T PRK05137 393 FF 394 (435)
T ss_pred EE
Confidence 54
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-09 Score=107.04 Aligned_cols=194 Identities=9% Similarity=0.137 Sum_probs=122.5
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc-CCcEEE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT-SSRVIT 318 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~-d~tIrl 318 (453)
.|+|++||.. |++|..|+++|||+..+-++. .....|...|..+.|+|++.++++- ....+|
T Consensus 149 ~vaf~~~gs~---latgg~dg~lRv~~~Ps~~t~--------------l~e~~~~~eV~DL~FS~dgk~lasig~d~~~V 211 (398)
T KOG0771|consen 149 VVAFNGDGSK---LATGGTDGTLRVWEWPSMLTI--------------LEEIAHHAEVKDLDFSPDGKFLASIGADSARV 211 (398)
T ss_pred EEEEcCCCCE---eeeccccceEEEEecCcchhh--------------hhhHhhcCccccceeCCCCcEEEEecCCceEE
Confidence 5899999885 899999999999997654421 1134566889999999999766653 238999
Q ss_pred EECCCCceEEEEeecc-CCeEEEE-EEecC--CEE-EEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee
Q 046773 319 FDLRNQGMVLGERGYG-RGLYVTS-VDVNA--EAY-IVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 319 WDl~t~~~~~~~~g~~-~~~~v~~-~~~~g--~~l-~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~ 393 (453)
||++++-++.+..... ....-.| |..++ +.| +.++.....--.-..+.+|+.+..-...+.....+.+.++..++
T Consensus 212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC
Confidence 9999986554332111 0111111 32222 222 22221110000001345565542111122222233577888888
Q ss_pred CCCeEEEEeC-CeEEEEECCCCeEEEEec-ccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 394 NQGYALMCVE-GVIRVWEVEGGEYMYSFR-ERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 394 ~~~~lls~s~-~tIrlWD~~tG~~l~tL~-gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
+|++++.++- |.|-|.++.+=++++-.+ .|... |+ .|+||.+.+++- .|..+.|-.+
T Consensus 292 dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~-VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 292 DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGF-VTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CCcEEEEeccCCcEEEEEeceeeeeEeehhhheee-eeeEEEcCCcCcccccccCCceeEEEE
Confidence 9999887776 999999999988887664 56665 88 789999999877 7877776544
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.1e-08 Score=99.55 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=108.1
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc-C--C
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT-S--S 314 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~-d--~ 314 (453)
..+|+|||++++.........+|.+||+++++... +..+...+.+++|+|++. +.+.. + .
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------------eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 36899999984322222223589999999986211 112233455678888763 33332 2 3
Q ss_pred cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeC
Q 046773 315 RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMN 394 (453)
Q Consensus 315 tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~ 394 (453)
.|.+||+.++.. ..+..+.....-..++++++.++..+..+. ...+.+++.++++ ...+..+........++++
T Consensus 259 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~-~~~l~~~~~~~~~~~~spd 332 (417)
T TIGR02800 259 DIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGGE-VRRLTFRGGYNASPSWSPD 332 (417)
T ss_pred cEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCC----CceEEEEECCCCC-EEEeecCCCCccCeEECCC
Confidence 699999998753 222222211112467888988877665330 1145566666654 3445555555567788999
Q ss_pred CCeEEEEeC----CeEEEEECCCCeEEEEecccCCceEE-EEecCCCEEEEE
Q 046773 395 QGYALMCVE----GVIRVWEVEGGEYMYSFRERIGEEVI-AFVGDDRHVAAS 441 (453)
Q Consensus 395 ~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~-a~s~d~~~lasg 441 (453)
+++++.++. ..|.+||+.++.. ..+...... .. +|+||++.|+..
T Consensus 333 g~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~-~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 333 GDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLD-ESPSFAPNGRMILYA 382 (417)
T ss_pred CCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCC-CCceECCCCCEEEEE
Confidence 998886654 3899999998754 333322211 22 789999988766
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-08 Score=108.86 Aligned_cols=239 Identities=15% Similarity=0.120 Sum_probs=142.9
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCCeE--EEEecCCCCCccccccceEEEEEE----cCCeEEEEeCCCCEEEE
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTRLH--VRTFRPQHSDRLGQFSRAVSGIII----TDSQLIFATLDGDIHVA 217 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~--~~tl~gh~~~~~~~~s~~V~~i~f----~g~~LasgS~D~tIkvW 217 (453)
|+|+.|++ .+||.|.++|.|-+||+..+.. +..+..+.. .+...|.++.. .+..++|+|.||.|.-|
T Consensus 245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~----sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEV----SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccc----cCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 78999875 6999999999999999988876 333332211 12234555543 24569999999999999
Q ss_pred EeecCCcceEEe-------eec---ceecCceEEEEeCCCceeeEEEEeeCCCeEEE---eeCCCCc--EEecccccCCc
Q 046773 218 VIDDVANETRTA-------HFG---SVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHI---WDRQAEE--VFVGGDLTDHN 282 (453)
Q Consensus 218 d~~~~g~~~~~~-------~~~---~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrv---WD~~tg~--~~~g~~l~~~~ 282 (453)
+++--- .+..+ |.+ .-......+.|.+--.. .++.|+.+|.|-- ++...+. .+.++
T Consensus 321 ~~~~l~-~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~--~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~------ 391 (555)
T KOG1587|consen 321 DTDMLS-LPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN--HFIVGTEEGKVYKGCRKGYTPAPEVSYKGH------ 391 (555)
T ss_pred eccccc-cchhhcccccccccccccccccceeeEeeccCCCc--eEEEEcCCcEEEEEeccCCccccccccccc------
Confidence 876410 11111 100 00001123677665432 3667888887754 2333222 22322
Q ss_pred ceeeeeeeeeeccceeEEEEcC--CceEEEEcCCcEEEEECCCCceEEE-EeeccCCeEEEEEEecCC---EEEEEeCCC
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTS--HESAVACTSSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAE---AYIVVENRE 356 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~--~~~~vas~d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~---~l~s~s~dg 356 (453)
.+...|.++|.+|.++| ...++++.|-+||||........+. ..-+ ..+|.++..++. .++++..+|
T Consensus 392 -----~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~--~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 392 -----STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS--PDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred -----ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc--cceeeeeEEcCcCceEEEEEcCCC
Confidence 13456778999998875 3467777799999998773333322 2222 234666665543 467778888
Q ss_pred ccccCcceEEEEEcCC--CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCC
Q 046773 357 LENQNRRLAIVRRVDT--FEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEG 413 (453)
Q Consensus 357 ~~~~~~~~i~Iw~~~t--g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~t 413 (453)
++-|||+.. -+++.+.... ..+...++.+..+.++++++ |++.++++..
T Consensus 465 -------~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 465 -------NLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred -------ceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999763 3444444333 22333334444344455554 9999999963
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=112.16 Aligned_cols=228 Identities=14% Similarity=0.163 Sum_probs=127.7
Q ss_pred eEEEEeCCCCEEEEEeecCCcceEEe-eecceecCceE-EEE-eCCCceeeEEEEeeCCCeEEEee-CCCC-cEEecccc
Q 046773 204 QLIFATLDGDIHVAVIDDVANETRTA-HFGSVMDDGVL-IDF-TGCSRYWVGLYAGLAGRAFHIWD-RQAE-EVFVGGDL 278 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~~g~~~~~~-~~~~v~~~~~~-v~F-s~dg~~~~~LaSgS~D~tIrvWD-~~tg-~~~~g~~l 278 (453)
.++++..-.+|+|||++. + ..+.+ +.+......+. +.| +.+.. ..|.+||.|++||||+ ..++ ..
T Consensus 1078 ~i~~ad~r~~i~vwd~e~-~-~~l~~F~n~~~~~t~Vs~l~liNe~D~--aLlLtas~dGvIRIwk~y~~~~~~------ 1147 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEK-G-RLLNGFDNGAFPDTRVSDLELINEQDD--ALLLTASSDGVIRIWKDYADKWKK------ 1147 (1387)
T ss_pred eeEEcCCcceEEEEeccc-C-ceeccccCCCCCCCccceeeeecccch--hheeeeccCceEEEecccccccCC------
Confidence 455444345689999987 4 33332 22221111111 111 11122 2477899999999995 4443 11
Q ss_pred cCCcceeeeeeeeeecc---ceeEEEEc---CCceEEEEcC-CcEEEEECCCCceEEEEeeccCCeEEEEEEec---CCE
Q 046773 279 TDHNTVMGWRMLTEFTE---FVGRVRVT---SHESAVACTS-SRVITFDLRNQGMVLGERGYGRGLYVTSVDVN---AEA 348 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~---~v~~v~~s---~~~~~vas~d-~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~---g~~ 348 (453)
++-|..|..|.++.. --+ +-++ ..+.++.++| ..|||||+..-.++.-.. .+....+++++.+ |+.
T Consensus 1148 --~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP-~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1148 --PELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP-YGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred --ceeEEeeccccccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecc-cCCCccceeecccccCCce
Confidence 112333443333310 011 1111 1234444555 679999999765544331 2234456777644 688
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCe---eEEEEEecCCC--eeEEEEeeCC-CeEEEEeC-CeEEEEECCCCeEE--EE
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFE---EVCRFSLRADR--NVNVMGCMNQ-GYALMCVE-GVIRVWEVEGGEYM--YS 419 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~---~v~~l~~~~~~--v~~~~~~~~~-~~lls~s~-~tIrlWD~~tG~~l--~t 419 (453)
++.|-+|| .+|++|..... .++....|.+. |..+.+-++| +.+++++. |.|++||+...... -+
T Consensus 1224 i~AGfaDG-------svRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1224 IAAGFADG-------SVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred EEEeecCC-------ceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 99999999 99999976542 34444555444 4444444433 35677776 99999999974221 22
Q ss_pred ecccC--CceEEE--EecCCCEEEEEeCCcEEEEecC
Q 046773 420 FRERI--GEEVIA--FVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 420 L~gh~--~~~V~a--~s~d~~~lasg~D~~IklWDl~ 452 (453)
...|. |..+++ +.++..+||||+-+.|+||++.
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS 1333 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCcceEEEEecC
Confidence 23343 221443 4578899999944999999974
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-08 Score=106.26 Aligned_cols=266 Identities=14% Similarity=0.122 Sum_probs=155.7
Q ss_pred EecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--C---CeEEEEeCCCCEEEEEeecCC
Q 046773 151 TLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--D---SQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 151 afs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g---~~LasgS~D~tIkvWd~~~~g 223 (453)
.||. ++|.. -.+.+|+|+.+.||+|+++|.+|.. .+.++.+. . ..++++|.||+|+|||+.. +
T Consensus 23 vfSnD~k~l~~-~~~~~V~VyS~~Tg~~i~~l~~~~a--------~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~-~ 92 (792)
T KOG1963|consen 23 VFSNDAKFLFL-CTGNFVKVYSTATGECITSLEDHTA--------PLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD-G 92 (792)
T ss_pred ccccCCcEEEE-eeCCEEEEEecchHhhhhhcccccC--------ccceeeecCCCccceEEEEEecCccEEEecCCC-c
Confidence 3554 45543 4467999999999999999998765 23444443 2 3577999999999999987 3
Q ss_pred --cceEEeeecceecCceEEEEeCCCce-------eeEEEEeeCC--CeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 224 --NETRTAHFGSVMDDGVLIDFTGCSRY-------WVGLYAGLAG--RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 224 --~~~~~~~~~~v~~~~~~v~Fs~dg~~-------~~~LaSgS~D--~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
+.+...+.. +..-....+|..+... .-.+.+++.+ ++++=..+.+-.... . ..+.+
T Consensus 93 ~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~-------~-----d~~~~ 159 (792)
T KOG1963|consen 93 ELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK-------G-----DFLKE 159 (792)
T ss_pred EEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccc-------h-----hhhhh
Confidence 233222111 0000000111111100 0001111111 111111111110000 0 12333
Q ss_pred eccceeEEEEcCCceEE-EEcCCcEEEEECCCCceEEEE-----eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEE
Q 046773 293 FTEFVGRVRVTSHESAV-ACTSSRVITFDLRNQGMVLGE-----RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 293 h~~~v~~v~~s~~~~~v-as~d~tIrlWDl~t~~~~~~~-----~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~ 366 (453)
|.. -.++.+++.+.+. ...+..+-+|+..++.. ++. +-|.-...+.+++|.++.++++..|| .|.
T Consensus 160 ~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~-~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dG-------rI~ 230 (792)
T KOG1963|consen 160 HQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTK-HTSSRDITVHHTFNITCVALSPNERYLAAGDSDG-------RIL 230 (792)
T ss_pred hcC-CccEEEcCCceEEEEEEeeeEEEEEecccce-eeccchhhhhhcccceeEEeccccceEEEeccCC-------cEE
Confidence 322 2345666655433 35667888999987541 111 23433335567888888999998899 788
Q ss_pred EEEcCC----CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEE
Q 046773 367 VRRVDT----FEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVA 439 (453)
Q Consensus 367 Iw~~~t----g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~la 439 (453)
||.--. ....+.+-.|.+.|..+.|+++|.++++++- +.+-+|.++|++ .+-|+ .-+..|. .++||+...+
T Consensus 231 vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLP-RLgs~I~~i~vS~ds~~~s 308 (792)
T KOG1963|consen 231 VWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLP-RLGSPILHIVVSPDSDLYS 308 (792)
T ss_pred EEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-ccccc-ccCCeeEEEEEcCCCCeEE
Confidence 884221 1234567788888999999999999999887 999999999998 23333 3344365 6789998776
Q ss_pred EE-eCCcEEEEe
Q 046773 440 AS-CGTNIHLWD 450 (453)
Q Consensus 440 sg-~D~~IklWD 450 (453)
.. .|+.|.|-.
T Consensus 309 l~~~DNqI~li~ 320 (792)
T KOG1963|consen 309 LVLEDNQIHLIK 320 (792)
T ss_pred EEecCceEEEEe
Confidence 66 899888753
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.1e-08 Score=101.66 Aligned_cols=174 Identities=10% Similarity=-0.018 Sum_probs=103.8
Q ss_pred EEEEeCCCceeeEEEEeeC---CCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEE-EcC
Q 046773 240 LIDFTGCSRYWVGLYAGLA---GRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVA-CTS 313 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~---D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~va-s~d 313 (453)
..+|+|||+. |+..+. ...|.+||+.+|+... +......+...+++|++. +.+ +.+
T Consensus 200 ~p~wSPDG~~---la~~s~~~~~~~I~~~dl~~g~~~~---------------l~~~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 200 SPAWSPDGTK---LAYVSFESKKPVVYVHDLATGRRRV---------------VANFKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred cceEcCCCCE---EEEEEccCCCcEEEEEECCCCCEEE---------------eecCCCCccceEECCCCCEEEEEEccC
Confidence 3789999997 444443 3469999999987321 111223345678898874 323 345
Q ss_pred CcEEEE--ECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCC-CccccCcceEEEEEcC--CCeeEEEEEecCCCeeE
Q 046773 314 SRVITF--DLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENR-ELENQNRRLAIVRRVD--TFEEVCRFSLRADRNVN 388 (453)
Q Consensus 314 ~tIrlW--Dl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~d-g~~~~~~~~i~Iw~~~--tg~~v~~l~~~~~~v~~ 388 (453)
+..+|| |+.++. +.++..+.......+++++|+.++..+.. + ...||..+ +++ ...++........
T Consensus 262 g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g-------~~~Iy~~~~~~g~-~~~lt~~g~~~~~ 332 (427)
T PRK02889 262 GNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG-------APQIYRMPASGGA-AQRVTFTGSYNTS 332 (427)
T ss_pred CCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCC-------CcEEEEEECCCCc-eEEEecCCCCcCc
Confidence 655555 555543 33332222112235689999988776643 4 45677554 443 3344444333445
Q ss_pred EEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE
Q 046773 389 VMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS 441 (453)
Q Consensus 389 ~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg 441 (453)
..++|++++++.++. ..|.+||+.+++......+..+. --+++||++.|+.+
T Consensus 333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~-~p~~spdg~~l~~~ 388 (427)
T PRK02889 333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDE-SPSFAPNGRYILYA 388 (427)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCcc-CceECCCCCEEEEE
Confidence 678999999886654 37999999998754322222121 22789999988765
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.9e-08 Score=96.76 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=127.0
Q ss_pred CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEE-eeccCCeE
Q 046773 260 RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLY 338 (453)
Q Consensus 260 ~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~ 338 (453)
+.+||-+++.+.++.-. -...+|-+|++.-+. ++.+-...|-|+|+++.+.+++. .-..+...
T Consensus 68 r~Lkv~~~Kk~~~ICe~---------------~fpt~IL~VrmNr~R-LvV~Lee~IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEI---------------FFPTSILAVRMNRKR-LVVCLEESIYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred ceEEEEEcccCceEEEE---------------ecCCceEEEEEccce-EEEEEcccEEEEecccceeehhhhccCCCccc
Confidence 44899999887733210 123568889998654 44466566999999999888875 22122333
Q ss_pred EEEEEecCC--EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-C-eEEEEECCCC
Q 046773 339 VTSVDVNAE--AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-G-VIRVWEVEGG 414 (453)
Q Consensus 339 v~~~~~~g~--~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~-tIrlWD~~tG 414 (453)
+.+++++.+ .++--++ .+.+.+.|||..+-+.+..+..|.+.+..++|+++|..++++|+ | .|||..+.+|
T Consensus 132 l~AlS~n~~n~ylAyp~s-----~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGS-----TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred eEeeccCCCCceEEecCC-----CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 567776654 5543221 11238999999999999999999999999999999999999998 5 5699999999
Q ss_pred eEEEEecccCCceEE----EEecCCCEEEEE-eCCcEEEEecC
Q 046773 415 EYMYSFRERIGEEVI----AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 415 ~~l~tL~gh~~~~V~----a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+.++.|+--.-. ++ +|+||+++|+++ +-+||+|+.++
T Consensus 207 ~kl~eFRRG~~~-~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 207 QKLYEFRRGTYP-VSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred cEeeeeeCCcee-eEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 999999643333 44 788999999877 78899999875
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.5e-08 Score=106.70 Aligned_cols=239 Identities=17% Similarity=0.207 Sum_probs=130.7
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCC-------CeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCCCCE
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTT-------RLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDGDI 214 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~t-------g~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~tI 214 (453)
|..++-+. .++||||.|||||+||... -++..|+.. .+ ..+.. .++.++.+|.++.||.|
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~-------sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EG-------SRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cC-------CceEEEEeccCCCeEEEEcCCCeE
Confidence 44566553 5999999999999999642 233444421 11 13333 45678999999999999
Q ss_pred EEEEeecC-C--cceEEeeecceecCceEE---EEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 215 HVAVIDDV-A--NETRTAHFGSVMDDGVLI---DFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 215 kvWd~~~~-g--~~~~~~~~~~v~~~~~~v---~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
++-.++.. . ....++..-....++..| +|....+.. .|+-+..-+.|-.||+++...+ |.
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~-~lvy~T~~~~iv~~D~r~~~~~-------------w~ 1188 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSH-VLVYATDLSRIVSWDTRMRHDA-------------WR 1188 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccce-eEEEEEeccceEEecchhhhhH-------------Hh
Confidence 99888752 1 111111100000112122 333332321 2444455567899999876511 10
Q ss_pred -eeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEE--EEEec-C--CEEEEEeCCCcccc
Q 046773 289 -MLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVT--SVDVN-A--EAYIVVENRELENQ 360 (453)
Q Consensus 289 -~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~--~~~~~-g--~~l~s~s~dg~~~~ 360 (453)
...--.+.|.+++++|.. ++++.+.|.+-+|||+=+..+..- -|.+...+. ++.|- + ...++++..+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw-~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~---- 1263 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW-EHPARAPIRHVWLCPTYPQESVSVSAGSSS---- 1263 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc-cCcccCCcceEEeeccCCCCceEEEecccC----
Confidence 001112678899999865 456667789999999865333221 111112222 22222 2 3455555433
Q ss_pred CcceEEEEEcCCCeeEEEEEec-----------------CCCe--eEEEEeeCCCeEEEEeC-CeEEEEECCC
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLR-----------------ADRN--VNVMGCMNQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~-----------------~~~v--~~~~~~~~~~~lls~s~-~tIrlWD~~t 413 (453)
-+-+.+|+..+|.+-.++-.. |..+ ....++...+.+++++. ..||.||..+
T Consensus 1264 -~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1264 -NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred -CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 127899999999776666443 1100 01111122344555544 8899999875
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.6e-09 Score=98.54 Aligned_cols=252 Identities=14% Similarity=0.063 Sum_probs=145.4
Q ss_pred EEEecCCCCCccccccceEEEEEEc-CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEE
Q 046773 177 VRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLY 254 (453)
Q Consensus 177 ~~tl~gh~~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~La 254 (453)
...|++|+. .|.++.|+ ..+|.+|+.-|.+++|++.+.. ...++++....+.+ +.--|+++ |.
T Consensus 7 ~fvLRp~~~--------~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~---lq~~p~d~----l~ 71 (323)
T KOG0322|consen 7 FFVLRPHSS--------SVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITN---LQSIPNDS----LD 71 (323)
T ss_pred eeEeccccc--------hheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeec---eeecCCcc----hh
Confidence 456777664 67778887 5679999999999999998722 23333332222211 22224332 55
Q ss_pred EeeCCCeEEEeeCCCCcEEecc-----cc--------cCC-cceee----------ee---------e------eeeecc
Q 046773 255 AGLAGRAFHIWDRQAEEVFVGG-----DL--------TDH-NTVMG----------WR---------M------LTEFTE 295 (453)
Q Consensus 255 SgS~D~tIrvWD~~tg~~~~g~-----~l--------~~~-~~v~~----------w~---------~------l~~h~~ 295 (453)
+=+.|.++.+|++.-+.-..-| ++ ..+ +.... .| + -.+-.+
T Consensus 72 tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg 151 (323)
T KOG0322|consen 72 TQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG 151 (323)
T ss_pred hcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence 6788999999998774411111 00 000 00000 00 0 001112
Q ss_pred ceeEEE--Ec-C-CceEEEEc-CCcEEEEECCCCceEEEEe--------eccCCeEEEEEEecC--CEEEEEeCCCcccc
Q 046773 296 FVGRVR--VT-S-HESAVACT-SSRVITFDLRNQGMVLGER--------GYGRGLYVTSVDVNA--EAYIVVENRELENQ 360 (453)
Q Consensus 296 ~v~~v~--~s-~-~~~~vas~-d~tIrlWDl~t~~~~~~~~--------g~~~~~~v~~~~~~g--~~l~s~s~dg~~~~ 360 (453)
.|.+.. +. . .-+++++. ++.|-+||+.++..++.+. -..|...|.+++++. ++=++++.+.
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d---- 227 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD---- 227 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc----
Confidence 222221 11 1 11344454 5789999999985444321 112233456666552 1112333333
Q ss_pred CcceEEEEEcC--CCeeE--EEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEec
Q 046773 361 NRRLAIVRRVD--TFEEV--CRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVG 433 (453)
Q Consensus 361 ~~~~i~Iw~~~--tg~~v--~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~ 433 (453)
.+.+|+++ ++.+. .++....-++..+..-||++.+++++- +.|||+.-+|.+.|..|.=|.+. |+ +|+|
T Consensus 228 ---kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag-vn~vAfsp 303 (323)
T KOG0322|consen 228 ---KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG-VNAVAFSP 303 (323)
T ss_pred ---cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc-eeEEEeCC
Confidence 55666554 34321 112222334566666677776666554 99999999999999999999988 98 7789
Q ss_pred CCCEEEEE-eCCcEEEEec
Q 046773 434 DDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 434 d~~~lasg-~D~~IklWDl 451 (453)
|-..+|++ .|+.|-||++
T Consensus 304 d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 DCELMAAASKDARISLWKL 322 (323)
T ss_pred CCchhhhccCCceEEeeec
Confidence 98899998 9999999996
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-06 Score=89.87 Aligned_cols=266 Identities=13% Similarity=0.133 Sum_probs=154.4
Q ss_pred EecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEee
Q 046773 151 TLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAH 230 (453)
Q Consensus 151 afs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~ 230 (453)
+.+++.+..++.|+.+..+|++||+.+....-. .. ......+.+..++.++.|+.+..+|.++ | ..+..+
T Consensus 102 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~-------~~~~p~v~~~~v~v~~~~g~l~a~d~~t-G-~~~W~~ 171 (377)
T TIGR03300 102 GADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SE-------VLSPPLVANGLVVVRTNDGRLTALDAAT-G-ERLWTY 171 (377)
T ss_pred EEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ce-------eecCCEEECCEEEEECCCCeEEEEEcCC-C-ceeeEE
Confidence 345567888889999999999999988765421 11 1111233566777788899999999877 5 221111
Q ss_pred ec--c-e--ecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC
Q 046773 231 FG--S-V--MDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH 305 (453)
Q Consensus 231 ~~--~-v--~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~ 305 (453)
.. . + .... ...+. ++ .++.++.++.+...|.++|+.+--.....+........+. ....+..+.++
T Consensus 172 ~~~~~~~~~~~~~-sp~~~-~~----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~---~~~~~p~~~~~ 242 (377)
T TIGR03300 172 SRVTPALTLRGSA-SPVIA-DG----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV---DVDGDPVVDGG 242 (377)
T ss_pred ccCCCceeecCCC-CCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh---ccCCccEEECC
Confidence 10 0 0 0000 01111 12 2567788899999999999843100000000000000000 00111223445
Q ss_pred ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-ecCC
Q 046773 306 ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-LRAD 384 (453)
Q Consensus 306 ~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-~~~~ 384 (453)
.+++++.++.+..+|+++|+.+....... ......+++.+..++.++ .+..+|..+|+.+-... ....
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~~~~~~vyv~~~~G-------~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPAVDDNRLYVTDADG-------VVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred EEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCceEeCCEEEEECCCC-------eEEEEECCCCcEEEccccccCC
Confidence 56666778899999999987655432111 123445677888888888 89999999998765542 1111
Q ss_pred CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEE
Q 046773 385 RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLW 449 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklW 449 (453)
...+.+ ..+++++.++. +.|.++|..+|+.+..++-+... ++ -...+++.++.+.||+|..+
T Consensus 312 ~~ssp~--i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 312 QLTAPA--VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-IASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCE--EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-cccCCEEECCEEEEEeCCceEEEe
Confidence 111111 13566666665 99999999999999988766544 43 23346655554488888764
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-09 Score=113.56 Aligned_cols=132 Identities=11% Similarity=0.207 Sum_probs=99.6
Q ss_pred EcCCcEEEEECCCCceEEE--EeeccCCeEEEEEE---ecCCEEEEEeCCCccccCcceEEEEEcCCC-------eeEEE
Q 046773 311 CTSSRVITFDLRNQGMVLG--ERGYGRGLYVTSVD---VNAEAYIVVENRELENQNRRLAIVRRVDTF-------EEVCR 378 (453)
Q Consensus 311 s~d~tIrlWDl~t~~~~~~--~~g~~~~~~v~~~~---~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-------~~v~~ 378 (453)
+..+.|-|+++...+.+-- ..+-..+..|..|. ||..+|+++..|+ .|+||.+.++ ++-..
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg-------~i~lWr~~a~gl~e~~~tPe~~ 672 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDG-------QINLWRLTANGLPENEMTPEKI 672 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCc-------eEEEEEeccCCCCcccCCccee
Confidence 3457899999986554321 11112234566665 5568999999999 9999987753 23445
Q ss_pred EEecCCCeeEEEEeeCC-CeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 379 FSLRADRNVNVMGCMNQ-GYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 379 l~~~~~~v~~~~~~~~~-~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
++.|.+.+.++.|+|-- ..|++++. .||+|||+++++.-..|.||++. |. +++|||+++|+- .|++|++++
T Consensus 673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq-If~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ-IFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc-eeEEEECCCCcceeeeecCceEEEeC
Confidence 78888889999998733 23333333 99999999999998899999999 87 778999999998 999999986
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-07 Score=105.62 Aligned_cols=253 Identities=15% Similarity=0.142 Sum_probs=144.4
Q ss_pred EECCCCeEEEEecCCCCCccccccceEEEEEE---cCCeEEEEeCCCCEEEEEeecC-C-cceEE----ee-ecceecCc
Q 046773 169 FDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII---TDSQLIFATLDGDIHVAVIDDV-A-NETRT----AH-FGSVMDDG 238 (453)
Q Consensus 169 WD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f---~g~~LasgS~D~tIkvWd~~~~-g-~~~~~----~~-~~~v~~~~ 238 (453)
|++ +|..+..|..|.. .|..++. +++.++|||.||||||||.... | ..+.+ -+ ++. ..
T Consensus 1034 W~p-~G~lVAhL~Ehs~--------~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~s---r~ 1101 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSS--------AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGS---RV 1101 (1431)
T ss_pred CCc-cceEeehhhhccc--------cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCC---ce
Confidence 666 4666766654432 3434443 3578999999999999997541 1 11111 11 111 11
Q ss_pred eEEEEeCCCceeeEEEEeeCCCeEEEeeCCC--CcEEecccccCCcceeeeeeeeeeccce-eEEEEc--CCc-eEEEEc
Q 046773 239 VLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA--EEVFVGGDLTDHNTVMGWRMLTEFTEFV-GRVRVT--SHE-SAVACT 312 (453)
Q Consensus 239 ~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t--g~~~~g~~l~~~~~v~~w~~l~~h~~~v-~~v~~s--~~~-~~vas~ 312 (453)
..|++.+.|+. +|.|+.|+.|++-++.- .+...+-....++ +... +.| ..-+|. ... .++...
T Consensus 1102 ~~vt~~~~~~~---~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n-------~~~~-g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1102 EKVTMCGNGDQ---FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPN-------LKKD-GVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred EEEEeccCCCe---EEEEcCCCeEEEEEccccccccceeeeeeccc-------ccCC-CceEEeecccccccceeEEEEE
Confidence 23677777775 77889999999999876 2211100000000 0000 111 111121 112 344444
Q ss_pred -CCcEEEEECCCCceEEEEeeccCCeEEE--EEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC--CCee
Q 046773 313 -SSRVITFDLRNQGMVLGERGYGRGLYVT--SVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA--DRNV 387 (453)
Q Consensus 313 -d~tIrlWDl~t~~~~~~~~g~~~~~~v~--~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~--~~v~ 387 (453)
-+.|-.||+++...+.+++.......|+ ++++-++.+++|+..| .+-+||+.=+.+++... +| -.++
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G-------~l~lWDLRF~~~i~sw~-~P~~~~i~ 1242 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG-------QLVLWDLRFRVPILSWE-HPARAPIR 1242 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc-------eEEEEEeecCceeeccc-CcccCCcc
Confidence 4789999999864433322111112344 4677788999999999 99999988666665542 22 2355
Q ss_pred EEEEeeCC---CeEEEE-e-C-CeEEEEECCCCeEEEEecccCCc-------------------eEEEEecCC-CEEEEE
Q 046773 388 NVMGCMNQ---GYALMC-V-E-GVIRVWEVEGGEYMYSFRERIGE-------------------EVIAFVGDD-RHVAAS 441 (453)
Q Consensus 388 ~~~~~~~~---~~lls~-s-~-~tIrlWD~~tG~~l~tL~gh~~~-------------------~V~a~s~d~-~~lasg 441 (453)
.+..|+-. ...+++ + + +.|.+|++++|.|-++|..-.+. .+.+.-+++ ..+.+|
T Consensus 1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg 1322 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG 1322 (1431)
T ss_pred eEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec
Confidence 66666522 333433 3 3 89999999999998888533111 011111233 355667
Q ss_pred -eCCcEEEEecC
Q 046773 442 -CGTNIHLWDFG 452 (453)
Q Consensus 442 -~D~~IklWDl~ 452 (453)
+|..||.||..
T Consensus 1323 gsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPT 1334 (1431)
T ss_pred CCccceeeccCC
Confidence 99999999964
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-07 Score=97.84 Aligned_cols=225 Identities=10% Similarity=0.043 Sum_probs=128.9
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCCC---CEEEEEeecCC-cceEEeeecceec
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDG---DIHVAVIDDVA-NETRTAHFGSVMD 236 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~---tIkvWd~~~~g-~~~~~~~~~~v~~ 236 (453)
...|.+||. +|+..+.+..+.. .+.+ +++||+.|++.+.+. .|.+||+.+ | ...+....+..
T Consensus 175 ~~~L~~~D~-dG~~~~~l~~~~~--------~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~~l~~~~g~~-- 242 (427)
T PRK02889 175 RYQLQISDA-DGQNAQSALSSPE--------PIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRRVVANFKGSN-- 242 (427)
T ss_pred ccEEEEECC-CCCCceEeccCCC--------CcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEEEeecCCCCc--
Confidence 356777887 4555556554332 2333 445788999887643 488999887 5 22222121211
Q ss_pred CceEEEEeCCCceeeEEEEeeCCCeEEEeeC--CCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc
Q 046773 237 DGVLIDFTGCSRYWVGLYAGLAGRAFHIWDR--QAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT 312 (453)
Q Consensus 237 ~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~--~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~ 312 (453)
...+|+|||+.+ +++.+.|+..+||.+ .+++. ..++.+...+....|+|++. +..+.
T Consensus 243 --~~~~~SPDG~~l--a~~~~~~g~~~Iy~~d~~~~~~---------------~~lt~~~~~~~~~~wSpDG~~l~f~s~ 303 (427)
T PRK02889 243 --SAPAWSPDGRTL--AVALSRDGNSQIYTVNADGSGL---------------RRLTQSSGIDTEPFFSPDGRSIYFTSD 303 (427)
T ss_pred --cceEECCCCCEE--EEEEccCCCceEEEEECCCCCc---------------EECCCCCCCCcCeEEcCCCCEEEEEec
Confidence 247899999973 346677888777754 44442 11223333344567888764 33444
Q ss_pred C-CcEEEEEC--CCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 313 S-SRVITFDL--RNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 313 d-~tIrlWDl--~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
. +...||.+ .++.. .....++....-.+++|+|+.++..+.++ ....+.+|+.++++.. .++.. ......
T Consensus 304 ~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~----g~~~I~v~d~~~g~~~-~lt~~-~~~~~p 376 (427)
T PRK02889 304 RGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVG----GAFKLYVQDLATGQVT-ALTDT-TRDESP 376 (427)
T ss_pred CCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccC----CcEEEEEEECCCCCeE-EccCC-CCccCc
Confidence 2 55666654 44432 22222222222357899999988776554 1226889999887643 33322 234567
Q ss_pred EEeeCCCeEEEEeC--C--eEEEEECCCCeEEEEecccCCc
Q 046773 390 MGCMNQGYALMCVE--G--VIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 390 ~~~~~~~~lls~s~--~--tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
.++||++.++.++. + .+.+=|+ +|+..+.+..+.+.
T Consensus 377 ~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~ 416 (427)
T PRK02889 377 SFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGD 416 (427)
T ss_pred eECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCC
Confidence 88999999887654 2 3455455 46655656544443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.9e-07 Score=91.54 Aligned_cols=275 Identities=15% Similarity=0.121 Sum_probs=149.6
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecCCcceEEeeecc
Q 046773 156 YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDVANETRTAHFGS 233 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~ 233 (453)
++++-..+++|.|.|.+|.+.+.++..... + -..+.| ||+.+..++.|+.|-++|+.+ +....+...+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~----~----h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G~ 78 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGA----P----HAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVGG 78 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STT----E----EEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-SS
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCC----c----eeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecCC
Confidence 346777889999999999999999974321 1 112344 578888889999999999987 31111222221
Q ss_pred eecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe---ccccc----------------CCcce-------eee
Q 046773 234 VMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV---GGDLT----------------DHNTV-------MGW 287 (453)
Q Consensus 234 v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~---g~~l~----------------~~~~v-------~~w 287 (453)
+...+++|+||+++ +++...+++|.|+|.+|.+.+. .+... .+..+ ..|
T Consensus 79 ---~~~~i~~s~DG~~~--~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~ 153 (369)
T PF02239_consen 79 ---NPRGIAVSPDGKYV--YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIW 153 (369)
T ss_dssp ---EEEEEEE--TTTEE--EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEE
T ss_pred ---CcceEEEcCCCCEE--EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEE
Confidence 12348999999982 4455678999999999977221 11000 00000 001
Q ss_pred e-------ee----eeeccceeEEEEcCCc--eEEEE-cCCcEEEEECCCCceEEEE-ee------------ccCCeEEE
Q 046773 288 R-------ML----TEFTEFVGRVRVTSHE--SAVAC-TSSRVITFDLRNQGMVLGE-RG------------YGRGLYVT 340 (453)
Q Consensus 288 ~-------~l----~~h~~~v~~v~~s~~~--~~vas-~d~tIrlWDl~t~~~~~~~-~g------------~~~~~~v~ 340 (453)
. .+ ...........|+|++ ++++. .++.|-++|+++++..... .| |-....+.
T Consensus 154 vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw 233 (369)
T PF02239_consen 154 VVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW 233 (369)
T ss_dssp EEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred EEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence 0 00 0000111234566665 34443 3468889999987654322 22 11112233
Q ss_pred EEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE----eC-CeEEEEECCCCe
Q 046773 341 SVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC----VE-GVIRVWEVEGGE 415 (453)
Q Consensus 341 ~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~----s~-~tIrlWD~~tG~ 415 (453)
+..-.+...++.-... .+.+|+..+.+.+.++...+.. .-+..+|+++++... .+ .+|-|.|.++-+
T Consensus 234 ~~~~~~~~~~~~ig~~-------~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTD-------PVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp EEEBSSSSEEEEEE---------TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred eeccccceecccccCC-------ccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 3333333332222222 3456777777788888776555 445568899998876 33 899999999998
Q ss_pred EEEEecccCC-ceEE-EEecCCCEE-EEE-e-CCcEEEEecC
Q 046773 416 YMYSFRERIG-EEVI-AFVGDDRHV-AAS-C-GTNIHLWDFG 452 (453)
Q Consensus 416 ~l~tL~gh~~-~~V~-a~s~d~~~l-asg-~-D~~IklWDl~ 452 (453)
.+.++....+ ..+. .|++||+.+ +|. . ++.|.|+|-.
T Consensus 306 ~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 306 VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 8888864444 2144 889999976 455 3 3489999853
|
... |
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.6e-08 Score=96.89 Aligned_cols=180 Identities=9% Similarity=0.142 Sum_probs=115.9
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc----CCceEEEEcCCcEEEEECCCCceEE
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT----SHESAVACTSSRVITFDLRNQGMVL 328 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s----~~~~~vas~d~tIrlWDl~t~~~~~ 328 (453)
+|++-.-++|||+|..||+.+. .+.++...+|.|+|. |+.+.++|+|++||+||+++.+..-
T Consensus 43 vav~lSngsv~lyd~~tg~~l~--------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a 108 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLE--------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA 108 (376)
T ss_pred EEEEecCCeEEEEeccchhhhh--------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh
Confidence 5566667899999999988431 234555667788874 5667888899999999999875443
Q ss_pred EE--eeccCCeEEEEEEec--CCEEEEEeCCCccccCcceEEEEEcCCCee-EEE-EEecCCCeeEEEEeeC-CCeEEEE
Q 046773 329 GE--RGYGRGLYVTSVDVN--AEAYIVVENRELENQNRRLAIVRRVDTFEE-VCR-FSLRADRNVNVMGCMN-QGYALMC 401 (453)
Q Consensus 329 ~~--~g~~~~~~v~~~~~~--g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~-v~~-l~~~~~~v~~~~~~~~-~~~lls~ 401 (453)
+. ..+. ...-.+|+.. ++.++.++--. ..+-.+-+||+..-+. +.. ...|.+.|..+.|+|+ +..++++
T Consensus 109 ~~~~~~~~-~~~f~~ld~nck~~ii~~GtE~~---~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 109 RISWTQQS-GTPFICLDLNCKKNIIACGTELT---RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred heeccCCC-CCcceEeeccCcCCeEEeccccc---cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 32 2332 3345677763 44444442111 1233678899886543 332 2456677999999984 5666677
Q ss_pred eC-CeEEEEECCCCeE----EEEecccCCceEE--EEecCC-CEEEEE-eCCcEEEEecC
Q 046773 402 VE-GVIRVWEVEGGEY----MYSFRERIGEEVI--AFVGDD-RHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 402 s~-~tIrlWD~~tG~~----l~tL~gh~~~~V~--a~s~d~-~~lasg-~D~~IklWDl~ 452 (453)
|. |-|-|.|++.-.. ++++ .|... |. .|..++ ++|-+- .+.+..+|++.
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~~vi-N~~sS-I~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALLHVI-NHGSS-IHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred cccceEEeeecCCCcchhhHHHhh-cccce-eeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 66 9999999985422 2333 24333 54 344444 456555 88899999874
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-07 Score=104.23 Aligned_cols=271 Identities=12% Similarity=0.131 Sum_probs=157.8
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcce
Q 046773 147 CRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANET 226 (453)
Q Consensus 147 v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~ 226 (453)
+.+.||-.++|..|+ ---|.++|+..+..++.++.-+. ...|. .-.-+-..+.++++++.-..+.+=..+- ..
T Consensus 10 l~~~~~~~~~llag~-gp~i~~yd~~s~~li~~~~~~~~--~~~H~-~e~~~~l~~~~~v~~~~~~~v~~~~~~~---~~ 82 (967)
T KOG0974|consen 10 LNLPQLVSDYLLAGS-GPEILVYDLSSGCLIRHLIQSKI--LEVHR-GEGKVKLLSGKIVTCAKSDEVYVKEASN---QI 82 (967)
T ss_pred ccchhhccceeeecC-CCceEEeeCCchhHhhhhhhhcc--ccccc-ccccceeccceEEEEEeecceeecchhh---hh
Confidence 566777557776665 45799999999987766542110 00000 0000112233455544333322211111 00
Q ss_pred EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc
Q 046773 227 RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE 306 (453)
Q Consensus 227 ~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~ 306 (453)
...-.+++.. -.|.-+.+. ++.+..++.+-|||..-+..+.- ...++.. --..+.-+.++++.
T Consensus 83 ~~~~s~wi~g----~~l~~e~k~---i~l~~~~ns~~i~d~~~~~~~~~--i~~~er~--------~l~~~~~~g~s~~~ 145 (967)
T KOG0974|consen 83 IERFSDWIFG----AKLFEENKK---IALVTSRNSLLIRDSKNSSVLSK--IQSDERC--------TLYSSLIIGDSAEE 145 (967)
T ss_pred hhhccccccc----cchhhhcce---EEEEEcCceEEEEecccCceehh--cCCCceE--------EEEeEEEEeccCcE
Confidence 0001111111 011111122 56677889999999887764320 0001100 00111123346666
Q ss_pred eEEEEc--CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEE-EEEecC
Q 046773 307 SAVACT--SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC-RFSLRA 383 (453)
Q Consensus 307 ~~vas~--d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~-~l~~~~ 383 (453)
.-++++ -+.|-+|++.-......+.||.....-..++.+|.+++++|.|. ++|+|++++.+.+. +.=+|+
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDR-------siRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDR-------SIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCc-------ceeeeecccccccCccccccc
Confidence 655544 47899999973333334567765554445566899999999999 99999999976544 333566
Q ss_pred CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEe--cCCCEEEEE-eCCcEEEEec
Q 046773 384 DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV--GDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 384 ~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s--~d~~~lasg-~D~~IklWDl 451 (453)
..+-...+.++ ++++++. .|.|+|+.. ++.+.++.+|.+..+|++. ++..+++++ .|+++|+||+
T Consensus 219 aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 55666777766 7777777 999999654 7778899999887688543 444566788 9999999986
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.5e-08 Score=95.98 Aligned_cols=243 Identities=13% Similarity=0.098 Sum_probs=144.9
Q ss_pred EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCCc-----ceEE--eeecceecCceEEEEeCC
Q 046773 176 HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVAN-----ETRT--AHFGSVMDDGVLIDFTGC 246 (453)
Q Consensus 176 ~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~-----~~~~--~~~~~v~~~~~~v~Fs~d 246 (453)
|.+-+.+|.+ .|.+|.|+ ++.||||+.|..++||+++. .+ .++. +|... .+--.++|...
T Consensus 48 ~qKD~~~H~G--------CiNAlqFS~N~~~L~SGGDD~~~~~W~~de-~~~~k~~KPI~~~~~~H~--SNIF~L~F~~~ 116 (609)
T KOG4227|consen 48 CQKDVREHTG--------CINALQFSHNDRFLASGGDDMHGRVWNVDE-LMVRKTPKPIGVMEHPHR--SNIFSLEFDLE 116 (609)
T ss_pred hhhhhhhhcc--------ccceeeeccCCeEEeecCCcceeeeechHH-HHhhcCCCCceeccCccc--cceEEEEEccC
Confidence 4455566554 78999997 67899999999999999875 11 2222 22110 11125889877
Q ss_pred CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC--ceEEEEcCCcEEEEECCCC
Q 046773 247 SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH--ESAVACTSSRVITFDLRNQ 324 (453)
Q Consensus 247 g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~--~~~vas~d~tIrlWDl~t~ 324 (453)
.++ |+||..|++|-+-|++|.+++.-. .++ ...+.|..+..+|. .+++++.++.|-+||.+..
T Consensus 117 N~~---~~SG~~~~~VI~HDiEt~qsi~V~---~~~---------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 117 NRF---LYSGERWGTVIKHDIETKQSIYVA---NEN---------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred Cee---EecCCCcceeEeeecccceeeeee---ccc---------CcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 775 899999999999999999954210 011 11235666666653 3455566789999999865
Q ss_pred ce---EEEEeeccCCeEEEEEEec-CCEEEEEeCCCccccCcceEEEEEcCCCee-EEE------EEe-cCCCeeEEEEe
Q 046773 325 GM---VLGERGYGRGLYVTSVDVN-AEAYIVVENRELENQNRRLAIVRRVDTFEE-VCR------FSL-RADRNVNVMGC 392 (453)
Q Consensus 325 ~~---~~~~~g~~~~~~v~~~~~~-g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~-v~~------l~~-~~~~v~~~~~~ 392 (453)
+. +....-.+...+...|.|- +..+++++.-+ -+-|||....+. +.. ++- ...| -++.++
T Consensus 182 ~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~-------G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~-M~~~~~ 253 (609)
T KOG4227|consen 182 QNPISLVLPANSGKNFYTAEFHPETPALILVNSETG-------GPNVFDRRMQARPVYQRSMFKGLPQENTEW-MGSLWS 253 (609)
T ss_pred CCCCceeeecCCCccceeeeecCCCceeEEeccccC-------CCCceeeccccchHHhhhccccCcccchhh-hheeeC
Confidence 31 1111111222333345543 34566666666 567888764321 100 100 1111 245677
Q ss_pred eCCCeEEEEeC-CeEEEEECCCCeEEEEecccC--CceEE-----EEe-cCCCEEEEE-eCCcEEEEecCC
Q 046773 393 MNQGYALMCVE-GVIRVWEVEGGEYMYSFRERI--GEEVI-----AFV-GDDRHVAAS-CGTNIHLWDFGA 453 (453)
Q Consensus 393 ~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~--~~~V~-----a~s-~d~~~lasg-~D~~IklWDl~~ 453 (453)
++|.++++--- .---++|+.+-+|..--..|. ++ .+ ++. .+++.|+|| .|=.|++|.+.+
T Consensus 254 ~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY-~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 254 PSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY-CNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred CCCCeehhhhccCCCEEeeeecccceeEeccCCCCcc-eeeeeeeeeeeecceeeeccCcccceEEEecCC
Confidence 88887775443 344578888877754333442 33 32 222 355668999 788999998853
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=103.35 Aligned_cols=160 Identities=12% Similarity=0.111 Sum_probs=105.7
Q ss_pred CCCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCCccccccceEEEEEE----cCCeEEEEe
Q 046773 137 SDVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFR-PQHSDRLGQFSRAVSGIII----TDSQLIFAT 209 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~-gh~~~~~~~~s~~V~~i~f----~g~~LasgS 209 (453)
.||+-- |.||.++ |.+|||||+|-.+.|||.-..+.++.+. ||.. -|-++.| ++++++||+
T Consensus 47 ~GH~GC----VN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHta--------NIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 47 TGHTGC----VNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTA--------NIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred ccccce----ecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccc--------ceeEEeeeccCCCeEEEecc
Confidence 389733 8999997 5799999999999999999988888874 5443 3444555 356899999
Q ss_pred CCCCEEEEEeec-------CC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEeccc
Q 046773 210 LDGDIHVAVIDD-------VA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGD 277 (453)
Q Consensus 210 ~D~tIkvWd~~~-------~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~ 277 (453)
.|+-|||.|++. .| .+....|+..|- .|+..|++-- .+-|+|.|+|||-.|++-.. +-.-
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVK----ria~~p~~Ph--tfwsasEDGtirQyDiREph~c~p~-- 186 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVK----RIATAPNGPH--TFWSASEDGTIRQYDIREPHVCNPD-- 186 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhh----heecCCCCCc--eEEEecCCcceeeecccCCccCCcc--
Confidence 999999999974 11 122333544432 3677777731 35589999999999998643 1100
Q ss_pred ccCCcceeeeeeeee-ec--cceeEEEEcCCc---eEEEEcCCcEEEEECC
Q 046773 278 LTDHNTVMGWRMLTE-FT--EFVGRVRVTSHE---SAVACTSSRVITFDLR 322 (453)
Q Consensus 278 l~~~~~v~~w~~l~~-h~--~~v~~v~~s~~~---~~vas~d~tIrlWDl~ 322 (453)
+.+ ...|.. +. -...++.++|.. ++++++|--+||+|.+
T Consensus 187 ----~~~--~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 187 ----EDC--PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ----ccc--cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 000 000000 00 123466777644 5677777789999965
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-08 Score=108.10 Aligned_cols=191 Identities=11% Similarity=0.007 Sum_probs=131.7
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCCCEEEEEeecCC-cce
Q 046773 150 LTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDGDIHVAVIDDVA-NET 226 (453)
Q Consensus 150 lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~tIkvWd~~~~g-~~~ 226 (453)
+-+...+++.+..++.+-|||...+..++.+.......+ ..+.-+.++. -.+++|+.-+.|.+|...... ...
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~ 170 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL----YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR 170 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEE----EeEEEEeccCcEEEEEeccccccEEEEeccccCCcce
Confidence 334456899999999999999988877665543211000 0111122333 368999999999999986322 234
Q ss_pred EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc
Q 046773 227 RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE 306 (453)
Q Consensus 227 ~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~ 306 (453)
+.+|.|.++ .+.++.||++ ++|.|+|.+||+|++++++.+.+ +.-+|+..|.++.|.|..
T Consensus 171 l~GHeG~iF----~i~~s~dg~~---i~s~SdDRsiRlW~i~s~~~~~~-------------~~fgHsaRvw~~~~~~n~ 230 (967)
T KOG0974|consen 171 LKGHEGSIF----SIVTSLDGRY---IASVSDDRSIRLWPIDSREVLGC-------------TGFGHSARVWACCFLPNR 230 (967)
T ss_pred ecccCCceE----EEEEccCCcE---EEEEecCcceeeeecccccccCc-------------ccccccceeEEEEeccce
Confidence 788988876 4889999997 88999999999999999884321 233889999999999998
Q ss_pred eEEEEcCCcEEEEECCCCceEEEEeeccCCe-EEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC
Q 046773 307 SAVACTSSRVITFDLRNQGMVLGERGYGRGL-YVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 307 ~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~-~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
+++++-|.|.|+|+..- ..+-...+|.... .-..+.+..-.++++..|+ .+|+|+...
T Consensus 231 i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds-------~lk~~~l~~ 289 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS-------TLKLWDLNG 289 (967)
T ss_pred eEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCc-------chhhhhhhc
Confidence 88889999999997653 2222223443222 2122333334567777888 999998764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.5e-06 Score=85.06 Aligned_cols=263 Identities=10% Similarity=0.043 Sum_probs=152.7
Q ss_pred EecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEee
Q 046773 151 TLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAH 230 (453)
Q Consensus 151 afs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~ 230 (453)
...+++|..++.|+.|.-+|..||+.+..+.-... ...+.+.++..++.++.|+.+..+|.++ | ..+..+
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--------~~~~p~v~~~~v~v~~~~g~l~ald~~t-G-~~~W~~ 131 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDER--------LSGGVGADGGLVFVGTEKGEVIALDAED-G-KELWRA 131 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCCC--------cccceEEcCCEEEEEcCCCEEEEEECCC-C-cEeeee
Confidence 44577888999999999999999998877653211 1123456788888899999999999877 5 222111
Q ss_pred -e-cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceE
Q 046773 231 -F-GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESA 308 (453)
Q Consensus 231 -~-~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~ 308 (453)
. +.+... .... +++ ++.++.|+.|..+|.++|+..--.....+. ..+.....+ .+..+.++
T Consensus 132 ~~~~~~~~~---p~v~-~~~----v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-----~~~~~~~sp----~~~~~~v~ 194 (377)
T TIGR03300 132 KLSSEVLSP---PLVA-NGL----VVVRTNDGRLTALDAATGERLWTYSRVTPA-----LTLRGSASP----VIADGGVL 194 (377)
T ss_pred ccCceeecC---CEEE-CCE----EEEECCCCeEEEEEcCCCceeeEEccCCCc-----eeecCCCCC----EEECCEEE
Confidence 1 111100 0111 222 455678899999999999843110000000 001111111 12233345
Q ss_pred EEEcCCcEEEEECCCCceEEEEe-ecc--CCe------EEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 309 VACTSSRVITFDLRNQGMVLGER-GYG--RGL------YVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 309 vas~d~tIrlWDl~t~~~~~~~~-g~~--~~~------~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
+++.++.+..+|+++|+.+-+.. ... ... ...+....++.+..++.++ .+..+|..+|+.+-..
T Consensus 195 ~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g-------~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 195 VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQG-------RVAALDLRSGRVLWKR 267 (377)
T ss_pred EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCC-------EEEEEECCCCcEEEee
Confidence 55566889999999987654321 100 000 0011123456777778888 8999999999877655
Q ss_pred EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEec
Q 046773 380 SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl 451 (453)
.... .... ...++++..++. +.|..+|..+|+.+.....-.+..+.+....+..|..+ .|+.|.++|.
T Consensus 268 ~~~~--~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 268 DASS--YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred ccCC--ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEEC
Confidence 4221 1111 124567666665 99999999999987655322222011222245566666 8888888875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-06 Score=90.04 Aligned_cols=220 Identities=9% Similarity=-0.020 Sum_probs=129.4
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEEE--EEcCCeEEEEeC---CCCEEEEEeecCC-cceEEeeecceec
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGI--IITDSQLIFATL---DGDIHVAVIDDVA-NETRTAHFGSVMD 236 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i--~f~g~~LasgS~---D~tIkvWd~~~~g-~~~~~~~~~~v~~ 236 (453)
-..|.+||..++. .+.+..|.. .+... ++||+.|++.+. +..|.+||+.+ | ...+..+.+.+
T Consensus 181 ~~~l~~~d~dg~~-~~~lt~~~~--------~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~~~~l~~~~g~~-- 248 (435)
T PRK05137 181 IKRLAIMDQDGAN-VRYLTDGSS--------LVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQRELVGNFPGMT-- 248 (435)
T ss_pred ceEEEEECCCCCC-cEEEecCCC--------CeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-CcEEEeecCCCcc--
Confidence 4589999986554 456654432 24444 456888998875 35799999977 5 23333232221
Q ss_pred CceEEEEeCCCceeeEEEEeeCCCe--EEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc
Q 046773 237 DGVLIDFTGCSRYWVGLYAGLAGRA--FHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT 312 (453)
Q Consensus 237 ~~~~v~Fs~dg~~~~~LaSgS~D~t--IrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~ 312 (453)
...+|+|||+.+ +++.+.|+. |.+||+++++.. .|+.+........++|++. +.++.
T Consensus 249 --~~~~~SPDG~~l--a~~~~~~g~~~Iy~~d~~~~~~~---------------~Lt~~~~~~~~~~~spDG~~i~f~s~ 309 (435)
T PRK05137 249 --FAPRFSPDGRKV--VMSLSQGGNTDIYTMDLRSGTTT---------------RLTDSPAIDTSPSYSPDGSQIVFESD 309 (435)
T ss_pred --cCcEECCCCCEE--EEEEecCCCceEEEEECCCCceE---------------EccCCCCccCceeEcCCCCEEEEEEC
Confidence 136899999873 456666655 666799888732 1223333345567888763 33443
Q ss_pred C---CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 313 S---SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 313 d---~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
. ..|.++|+.++.. .++..+........++|+|+.++..+.+. ....+.+++.+++. ...++. +..+...
T Consensus 310 ~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~----~~~~i~~~d~~~~~-~~~lt~-~~~~~~p 382 (435)
T PRK05137 310 RSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGG----GQFSIGVMKPDGSG-ERILTS-GFLVEGP 382 (435)
T ss_pred CCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCC----CceEEEEEECCCCc-eEeccC-CCCCCCC
Confidence 2 2588889887643 33321122223356889999988776543 11256667765543 333432 2234567
Q ss_pred EEeeCCCeEEEEeC--C-----eEEEEECCCCeEEEEec
Q 046773 390 MGCMNQGYALMCVE--G-----VIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 390 ~~~~~~~~lls~s~--~-----tIrlWD~~tG~~l~tL~ 421 (453)
.++||++.++..+. + .+.+.|+..++. ..|.
T Consensus 383 ~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~ 420 (435)
T PRK05137 383 TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP 420 (435)
T ss_pred eECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc
Confidence 88999998875443 2 466778765543 4443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-07 Score=89.26 Aligned_cols=187 Identities=11% Similarity=0.084 Sum_probs=122.9
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC--Cc-eEEEEcCCcE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS--HE-SAVACTSSRV 316 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~--~~-~~vas~d~tI 316 (453)
.|-|.|++.. |++ -.|..|.+|+++.+..... .+..+.. .++.....+-+.+| ++ .+.+..|+++
T Consensus 128 cvew~Pns~k---las-m~dn~i~l~~l~ess~~va-ev~ss~s-------~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 128 CVEWEPNSDK---LAS-MDDNNIVLWSLDESSKIVA-EVLSSES-------AEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred eEEEcCCCCe---eEE-eccCceEEEEcccCcchhe-eeccccc-------ccccceecccccCCCCccceEEEeCCCcE
Confidence 5899999986 444 3489999999987652110 0000100 01112222233444 22 3444677899
Q ss_pred EEEECCCCceEEEE-eeccCCeEEEEEEecCC---EEEEEeCCCccccCcceEEEEEcCC-CeeEEEEEecCCCeeEEEE
Q 046773 317 ITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAE---AYIVVENRELENQNRRLAIVRRVDT-FEEVCRFSLRADRNVNVMG 391 (453)
Q Consensus 317 rlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~---~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~v~~l~~~~~~v~~~~~ 391 (453)
+.||++|..+.... ..|+ ..|..++++++ .|+++..|+ -+||||... ..+++++..|.+||-.+.|
T Consensus 196 ~~~D~RT~~~~~sI~dAHg--q~vrdlDfNpnkq~~lvt~gDdg-------yvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHG--QRVRDLDFNPNKQHILVTCGDDG-------YVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred EEEEccchhhhcchhhhhc--ceeeeccCCCCceEEEEEcCCCc-------cEEEEeccCCCccccccCCCceEEEEEEe
Confidence 99999998776553 4454 36778888876 467788888 999999874 5688999999999999999
Q ss_pred eeCCCeEE-EEeC-CeEEEEECCCC-----------------------------eEEEEecccCCceEEEE--ec-CCCE
Q 046773 392 CMNQGYAL-MCVE-GVIRVWEVEGG-----------------------------EYMYSFRERIGEEVIAF--VG-DDRH 437 (453)
Q Consensus 392 ~~~~~~ll-s~s~-~tIrlWD~~tG-----------------------------~~l~tL~gh~~~~V~a~--s~-d~~~ 437 (453)
.|.-..|+ ++++ ..|-||.+.+- ..|.++..|.+. |.++ +. |.=+
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS-VY~~aWSsadPWi 345 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS-VYALAWSSADPWI 345 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc-eEEEeeccCCCee
Confidence 88655555 4444 88999976421 114467788888 8844 44 4434
Q ss_pred EEEE-eCCcEEE
Q 046773 438 VAAS-CGTNIHL 448 (453)
Q Consensus 438 lasg-~D~~Ikl 448 (453)
.||= +||.+.|
T Consensus 346 FASLSYDGRviI 357 (370)
T KOG1007|consen 346 FASLSYDGRVII 357 (370)
T ss_pred EEEeccCceEEe
Confidence 4665 8888765
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.6e-08 Score=96.83 Aligned_cols=147 Identities=15% Similarity=0.080 Sum_probs=109.9
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEE--cCCcEE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVAC--TSSRVI 317 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas--~d~tIr 317 (453)
++.|.+++.- -||||+.|+-||||-++.++--.| ...+...-.|..|+..||.|+|+|++.++|| +++.|-
T Consensus 18 s~dfq~n~~~--~laT~G~D~~iriW~v~r~~~~~~-----~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 18 SVDFQKNSLN--KLATAGGDKDIRIWKVNRSEPGGG-----DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred EEEeccCccc--ceecccCccceeeeeeeecCCCCC-----ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 4677777551 389999999999999887651000 0123333468899999999999998766654 347899
Q ss_pred EEECC--------C-----Cc---eEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEe
Q 046773 318 TFDLR--------N-----QG---MVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSL 381 (453)
Q Consensus 318 lWDl~--------t-----~~---~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~ 381 (453)
||-.. + .+ ..+.+.+|...++-.+.++++..+++++.|. ++++||+..|+.++.+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn-------s~~l~Dv~~G~l~~~~~d 163 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN-------SVRLWDVHAGQLLAILDD 163 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc-------eEEEEEeccceeEeeccc
Confidence 99766 3 11 1223467777777778889999999999999 999999999999998888
Q ss_pred cCCCeeEEEEeeCCCeEEE
Q 046773 382 RADRNVNVMGCMNQGYALM 400 (453)
Q Consensus 382 ~~~~v~~~~~~~~~~~lls 400 (453)
|.+-++.++..|-..++++
T Consensus 164 h~~yvqgvawDpl~qyv~s 182 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVAS 182 (434)
T ss_pred cccccceeecchhhhhhhh
Confidence 8888888888776666554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-06 Score=93.75 Aligned_cols=280 Identities=11% Similarity=0.099 Sum_probs=157.7
Q ss_pred EEEEEEecCCEEEE-----E---eCCCcEEEEECCCC-eEEEEecCCCCCccccccceEEEEEE---cCCeEEEEeCCCC
Q 046773 146 TCRCLTLSDLYLAC-----G---FADGAVRLFDLTTR-LHVRTFRPQHSDRLGQFSRAVSGIII---TDSQLIFATLDGD 213 (453)
Q Consensus 146 ~v~~lafs~~~LaS-----G---S~D~TIrlWD~~tg-~~~~tl~gh~~~~~~~~s~~V~~i~f---~g~~LasgS~D~t 213 (453)
+..+++|+.....+ . ..+..+-|||+... ..-..|... ..|.++.| ++..|+.|..+|.
T Consensus 196 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~~Pe~~~~~~---------s~v~~~~f~p~~p~ll~gG~y~Gq 266 (555)
T KOG1587|consen 196 IAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPNTPELVLESP---------SEVTCLKFCPFDPNLLAGGCYNGQ 266 (555)
T ss_pred eEEEEeecccccccccccccccccCCceEEEEecCCCCCceEEEecC---------CceeEEEeccCCcceEEeeccCce
Confidence 45677776532111 1 12247889999877 333444321 24666665 5789999999999
Q ss_pred EEEEEeecCCcc---eEEe----eecceecCceEEEE--eCCCceeeEEEEeeCCCeEEEeeCCCCcE-EecccccCCcc
Q 046773 214 IHVAVIDDVANE---TRTA----HFGSVMDDGVLIDF--TGCSRYWVGLYAGLAGRAFHIWDRQAEEV-FVGGDLTDHNT 283 (453)
Q Consensus 214 IkvWd~~~~g~~---~~~~----~~~~v~~~~~~v~F--s~dg~~~~~LaSgS~D~tIrvWD~~tg~~-~~g~~l~~~~~ 283 (453)
|-+||+...+.. .+.. |...+. .+-. ++.. .-++|+|.|+.|+.|+++-=.. ..+. +.++..
T Consensus 267 V~lWD~~~~~~~~~s~ls~~~~sh~~~v~----~vvW~~~~~~---~~f~s~ssDG~i~~W~~~~l~~P~e~~-~~~~~~ 338 (555)
T KOG1587|consen 267 VVLWDLRKGSDTPPSGLSALEVSHSEPVT----AVVWLQNEHN---TEFFSLSSDGSICSWDTDMLSLPVEGL-LLESKK 338 (555)
T ss_pred EEEEEccCCCCCCCcccccccccCCcCeE----EEEEeccCCC---CceEEEecCCcEeeeeccccccchhhc-cccccc
Confidence 999999873321 1111 222221 1111 1111 1278999999999998764221 0000 000000
Q ss_pred eeeeeeeeeeccceeEEEEc---CCceEEEEcCCcEE---EEECCCCc----eEE-EEeeccCCeEEEEEEecCCEEEEE
Q 046773 284 VMGWRMLTEFTEFVGRVRVT---SHESAVACTSSRVI---TFDLRNQG----MVL-GERGYGRGLYVTSVDVNAEAYIVV 352 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s---~~~~~vas~d~tIr---lWDl~t~~----~~~-~~~g~~~~~~v~~~~~~g~~l~s~ 352 (453)
..+ ..+.. .-.+.++.|. |...++++..|.|- -++.+... ..+ +...|...+++..++|-+..+++.
T Consensus 339 ~~~-~~~~~-~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls 416 (555)
T KOG1587|consen 339 HKG-QQSSK-AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLS 416 (555)
T ss_pred ccc-ccccc-ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeee
Confidence 000 00011 1234566774 55566766667654 35666543 111 112233344444555666777777
Q ss_pred eCCCccccCcceEEEEEcC-CCeeEEEEEecCCCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCC--eEEEEecccCCce
Q 046773 353 ENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGG--EYMYSFRERIGEE 427 (453)
Q Consensus 353 s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG--~~l~tL~gh~~~~ 427 (453)
+.|- +++||.-. ...++..+..+++-+..+++||---.+.++. . |+|-|||+.-- +.+.+..-+ ...
T Consensus 417 ~gDW-------~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~ 488 (555)
T KOG1587|consen 417 VGDW-------TVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPA 488 (555)
T ss_pred eccc-------eeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccc
Confidence 7799 99999876 4445555555666677788887433344444 3 99999999753 223333222 220
Q ss_pred EE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 428 VI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 428 V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.. .++++++.|+.| .-|+|++|++.
T Consensus 489 l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 489 LTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 22 456789999999 89999999984
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-06 Score=88.37 Aligned_cols=186 Identities=8% Similarity=-0.009 Sum_probs=107.9
Q ss_pred EEEEeCCCceeeEEEEeeCC---CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEE-cC
Q 046773 240 LIDFTGCSRYWVGLYAGLAG---RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVAC-TS 313 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D---~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas-~d 313 (453)
...|+|||+.+ +..+.+ ..|.+||+.+|+... +....+.+...+|+|++. +.+. .+
T Consensus 203 ~p~wSpDG~~l---a~~s~~~~~~~l~~~~l~~g~~~~---------------l~~~~g~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 203 SPRWSPDGKRI---AYVSFEQKRPRIFVQNLDTGRREQ---------------ITNFEGLNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred eeeECCCCCEE---EEEEcCCCCCEEEEEECCCCCEEE---------------ccCCCCCcCCeEECCCCCEEEEEEccC
Confidence 36899999973 333322 468899999987321 111122344578898774 2222 23
Q ss_pred C--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEE
Q 046773 314 S--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMG 391 (453)
Q Consensus 314 ~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~ 391 (453)
+ .|.++|++++.. ..+..+........++++|+.++..+... ....+.++++++++. ..++..........+
T Consensus 265 g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~-~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 265 GNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRA-ERVTFVGNYNARPRL 338 (430)
T ss_pred CCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECCCCCE-EEeecCCCCccceEE
Confidence 3 588999998754 33322221222356888898877665422 012566667777753 334433322334567
Q ss_pred eeCCCeEEEEeC----CeEEEEECCCCeEEEEec-ccCCceEEEEecCCCEEEEE--eCCc--EEEEec
Q 046773 392 CMNQGYALMCVE----GVIRVWEVEGGEYMYSFR-ERIGEEVIAFVGDDRHVAAS--CGTN--IHLWDF 451 (453)
Q Consensus 392 ~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~-gh~~~~V~a~s~d~~~lasg--~D~~--IklWDl 451 (453)
+|++++++..+. ..|.+||+.+|+. +.|. ...+. --+++|||+.|+-+ .++. |.+.++
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~-~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDE-SPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCC-CceECCCCCEEEEEEecCCceEEEEEEC
Confidence 889998876553 3688999999865 3332 21111 12789999988754 3443 444443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.3e-06 Score=90.09 Aligned_cols=241 Identities=11% Similarity=0.090 Sum_probs=141.7
Q ss_pred CCCCCCCCeEEEEEEecC-----CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEE-EEEEcCCeEEEEeC
Q 046773 137 SDVDNPDGLTCRCLTLSD-----LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVS-GIIITDSQLIFATL 210 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~-----~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~-~i~f~g~~LasgS~ 210 (453)
.+|.+| +..+++.+ .++.+.|.||+|++||-..++.++|+.-+.. ++. .+. ...++-+..++.|.
T Consensus 54 ~~~~a~----l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~----v~~-~~~~~~~a~~s~~~~~s~ 124 (792)
T KOG1963|consen 54 EDHTAP----LTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP----VHA-LVYKPAQADISANVYVSV 124 (792)
T ss_pred ccccCc----cceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc----eeE-EEechhHhCccceeEeec
Confidence 389988 77888865 3788999999999999999999999975322 111 111 00112122222221
Q ss_pred C-C------------CEEEEEeecCCcceEEeeecceecC---ceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe
Q 046773 211 D-G------------DIHVAVIDDVANETRTAHFGSVMDD---GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV 274 (453)
Q Consensus 211 D-~------------tIkvWd~~~~g~~~~~~~~~~v~~~---~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~ 274 (453)
+ . +++=..+. +...+.+.+... ...|.+++.|.+- .--.+..+.+|++.++....
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~-----t~~~~~~d~~~~~~~~~~I~~~~~ge~~----~i~~~~~~~~~~v~~~~~~~ 195 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLA-----TFDSAKGDFLKEHQEPKSIVDNNSGEFK----GIVHMCKIHIYFVPKHTKHT 195 (792)
T ss_pred ccceeeeecccccccceeeeEee-----eccccchhhhhhhcCCccEEEcCCceEE----EEEEeeeEEEEEecccceee
Confidence 1 1 11111111 111111111111 1347788888752 22356778999999865221
Q ss_pred cccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc--CCcEEEEE-CC-CCc--eEEEEeeccCCeEEEEEEecCCE
Q 046773 275 GGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT--SSRVITFD-LR-NQG--MVLGERGYGRGLYVTSVDVNAEA 348 (453)
Q Consensus 275 g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~--d~tIrlWD-l~-t~~--~~~~~~g~~~~~~v~~~~~~g~~ 348 (453)
+.. ..-..|+....+++++|.+.++|++ ||.|.+|. .. .+. ....+.=|...+.+.+|+.+|..
T Consensus 196 ~~~----------~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~ 265 (792)
T KOG1963|consen 196 SSR----------DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY 265 (792)
T ss_pred ccc----------hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce
Confidence 100 1224677778999999999877765 48899994 33 111 11222223335566778888999
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEE-EEeCCeEEEEECCC
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYAL-MCVEGVIRVWEVEG 413 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~ll-s~s~~tIrlWD~~t 413 (453)
+.||+..+ ..-+|..+|++. +-|.--..-+..++.++|+.+.. .+.|+.|.|=.+.+
T Consensus 266 LlSGG~E~-------VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 266 LLSGGREG-------VLVLWQLETGKK-QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred Eeecccce-------EEEEEeecCCCc-ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 99999999 999999999862 22221123477788888877654 44556555554433
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.6e-07 Score=92.20 Aligned_cols=202 Identities=12% Similarity=0.051 Sum_probs=132.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeee-cc
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHF-GS 233 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~-~~ 233 (453)
.++|....|+.+||||..+++...-|.+- ++.|..+|.-.|.+.. +-.+.+... ..
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~----------------------~~~s~t~~~~~w~L~~-~~s~~k~~~~~~ 62 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPI----------------------ASLSGTCTYTKWGLSA-DYSPMKWLSLEK 62 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccc----------------------hhccCcceeEEEEEEe-ccchHHHHhHHH
Confidence 68899999999999999999977666531 1222233445666433 112211110 00
Q ss_pred eecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE---EecccccCCcceeeeeeeeeeccceeEEEEcCCc--eE
Q 046773 234 VMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV---FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SA 308 (453)
Q Consensus 234 v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~---~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~ 308 (453)
. ..-+.| . .+|+=|-.-+.|-++++..|++ +.+ -+|-+.|+++..+.+. +.
T Consensus 63 ~------~~~s~~-t--~~lvlgt~~g~v~~ys~~~g~it~~~st---------------~~h~~~v~~~~~~~~~~ciy 118 (541)
T KOG4547|consen 63 A------KKASLD-T--SMLVLGTPQGSVLLYSVAGGEITAKLST---------------DKHYGNVNEILDAQRLGCIY 118 (541)
T ss_pred H------hhccCC-c--eEEEeecCCccEEEEEecCCeEEEEEec---------------CCCCCcceeeecccccCceE
Confidence 0 000011 0 1366777888999999999982 221 2567888887665443 34
Q ss_pred EEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeE
Q 046773 309 VACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVN 388 (453)
Q Consensus 309 vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~ 388 (453)
++++|..|..|+..+...+.............++++++..+++|| + +|++|++++.+.+.+|++|+.-|++
T Consensus 119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~-------~ik~~~~~~kevv~~ftgh~s~v~t 189 (541)
T KOG4547|consen 119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--R-------QIKVLDIETKEVVITFTGHGSPVRT 189 (541)
T ss_pred ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--c-------eEEEEEccCceEEEEecCCCcceEE
Confidence 556678899999998654333333333344456777777777654 4 9999999999999999999999999
Q ss_pred EEEeeC-----CCeEEEEeC--CeEEEEECC
Q 046773 389 VMGCMN-----QGYALMCVE--GVIRVWEVE 412 (453)
Q Consensus 389 ~~~~~~-----~~~lls~s~--~tIrlWD~~ 412 (453)
+.|..+ |.+++++.. .-|-+|=+.
T Consensus 190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 190 LSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEEEEeccccccceeeeccccccceeEEEEE
Confidence 998876 778887765 566677544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.5e-05 Score=77.80 Aligned_cols=252 Identities=10% Similarity=0.021 Sum_probs=144.1
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeC----------CCCEEEEEeecCCcceEEeeec
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATL----------DGDIHVAVIDDVANETRTAHFG 232 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~----------D~tIkvWd~~~~g~~~~~~~~~ 232 (453)
.++|-+-|..+++.+.++..... | ... ++.|++.|+.+.. +..|.|||..+ +........+
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~~----P---~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p 96 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGFL----P---NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELP 96 (352)
T ss_pred CceEEEEECCCCEEEEEEEccCC----C---cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccC
Confidence 38999999999999988864222 1 122 6678888776655 67899999988 3111111110
Q ss_pred -----ceecCceEEEEeCCCceeeEEEEe--eCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC
Q 046773 233 -----SVMDDGVLIDFTGCSRYWVGLYAG--LAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH 305 (453)
Q Consensus 233 -----~v~~~~~~v~Fs~dg~~~~~LaSg--S~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~ 305 (453)
.+......++|+|||++ |+.. +.+.+|-|.|+++++.+.--..+++ ++. +..+.+
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~---l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-----~~v----------y~t~e~ 158 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKT---LLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-----YHI----------FPTAND 158 (352)
T ss_pred CCchhhccCccceEEECCCCCE---EEEecCCCCCEEEEEECCCCcEEEEEeCCCC-----cEE----------EEecCC
Confidence 01112235899999998 4433 4489999999999984320001111 110 111223
Q ss_pred ceEEEEcCCcEEEEECCCCceEEEE---eeccCCeEE---EEEEe-cCCEEEEEeCCCccccCcceEEEEEcCC-----C
Q 046773 306 ESAVACTSSRVITFDLRNQGMVLGE---RGYGRGLYV---TSVDV-NAEAYIVVENRELENQNRRLAIVRRVDT-----F 373 (453)
Q Consensus 306 ~~~vas~d~tIrlWDl~t~~~~~~~---~g~~~~~~v---~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-----g 373 (453)
..++-|.|++...--+.+.+..... ..+....++ ..|.+ +|.. +=.|..| ++.+-|+.. .
T Consensus 159 ~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~-~~vs~eG-------~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 159 TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL-VWPTYTG-------KIFQIDLSSGDAKFL 230 (352)
T ss_pred ccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE-EEEecCC-------eEEEEecCCCcceec
Confidence 3344455544332222221111111 111100000 12344 4443 3345557 777777432 2
Q ss_pred eeEEEEE-------ecCCCeeEEEEeeCCCeEEEEe----------C-CeEEEEECCCCeEEEEec-ccCCceEE--EEe
Q 046773 374 EEVCRFS-------LRADRNVNVMGCMNQGYALMCV----------E-GVIRVWEVEGGEYMYSFR-ERIGEEVI--AFV 432 (453)
Q Consensus 374 ~~v~~l~-------~~~~~v~~~~~~~~~~~lls~s----------~-~tIrlWD~~tG~~l~tL~-gh~~~~V~--a~s 432 (453)
+.+..++ .+|.+.+.++++++++++.... . +.|.+.|++|++.+..+. |+ .++ +|+
T Consensus 231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS 307 (352)
T TIGR02658 231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVS 307 (352)
T ss_pred ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEEC
Confidence 2233222 2455667788999988877632 1 689999999999999875 33 244 788
Q ss_pred cCCC-EEEEE--eCCcEEEEecC
Q 046773 433 GDDR-HVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 433 ~d~~-~lasg--~D~~IklWDl~ 452 (453)
||++ +|... .+++|.+.|..
T Consensus 308 ~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 308 QDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred CCCCeEEEEeCCCCCcEEEEECc
Confidence 9999 77654 67889999864
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=6e-07 Score=84.20 Aligned_cols=105 Identities=12% Similarity=0.260 Sum_probs=78.1
Q ss_pred EEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCCC
Q 046773 339 VTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEGG 414 (453)
Q Consensus 339 v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG 414 (453)
-.+++|+++.+++..+.. .+.++||+.. ++.+..+. ......+.++|+|++++.++- |.|.+||+.+.
T Consensus 64 ~~~WsP~g~~favi~g~~-----~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYGSM-----PAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred EEEECcCCCEEEEEEccC-----CcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 355678888877665432 1289999996 55565553 344678899999999998752 78999999999
Q ss_pred eEEEEecccCCceEEEEecCCCEEEEE-e------CCcEEEEecC
Q 046773 415 EYMYSFRERIGEEVIAFVGDDRHVAAS-C------GTNIHLWDFG 452 (453)
Q Consensus 415 ~~l~tL~gh~~~~V~a~s~d~~~lasg-~------D~~IklWDl~ 452 (453)
+++.++. |......+++|||++|+++ . |+.++||++.
T Consensus 136 ~~i~~~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 136 KKISTFE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEeeccc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 9998875 3333123889999999877 3 8999999974
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.6e-07 Score=89.30 Aligned_cols=195 Identities=11% Similarity=0.131 Sum_probs=117.9
Q ss_pred EEEeCCC--ceeeEEEEeeCCCeEEEeeCCCCc--EEecccccCCcceeeeeeeeeeccceeEEE---EcCCceEEEEcC
Q 046773 241 IDFTGCS--RYWVGLYAGLAGRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFVGRVR---VTSHESAVACTS 313 (453)
Q Consensus 241 v~Fs~dg--~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~---~s~~~~~vas~d 313 (453)
+.|.||. .+--.||| .+..+|||.+...+ ...-..|.. +.=..+..+..+.- +.|+-+.++|-|
T Consensus 102 ~~wiPd~~g~~pdlLAT--s~D~LRlWri~~ee~~~~~~~~L~~-------~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 102 LMWIPDSKGVYPDLLAT--SSDFLRLWRIGDEESRVELQSVLNN-------NKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred eEecCCccccCcchhhc--ccCeEEEEeccCcCCceehhhhhcc-------CcccccCCcccccccccCCcceeEeeccc
Confidence 4555653 33223555 34579999987533 111000100 01123344444432 235555666778
Q ss_pred CcEEEEECCCCce--EEE-EeeccCCeEEEEEEecC-CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC---Ce
Q 046773 314 SRVITFDLRNQGM--VLG-ERGYGRGLYVTSVDVNA-EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD---RN 386 (453)
Q Consensus 314 ~tIrlWDl~t~~~--~~~-~~g~~~~~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~---~v 386 (453)
.|+.|||++++.. +++ +..|-..++-.+|.-.+ +.+++++.|| .+|++|+..-+....+--.|. ..
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDG-------SvRmFDLR~leHSTIIYE~p~~~~pL 245 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADG-------SVRMFDLRSLEHSTIIYEDPSPSTPL 245 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCC-------cEEEEEecccccceEEecCCCCCCcc
Confidence 9999999999622 333 35565555545554322 4679999999 999999875332222222222 13
Q ss_pred eEEEEee-CCCeEEEEe-C-CeEEEEECCC-CeEEEEecccCCceEEE--EecC-CCEEEEE-eCCcEEEEecC
Q 046773 387 VNVMGCM-NQGYALMCV-E-GVIRVWEVEG-GEYMYSFRERIGEEVIA--FVGD-DRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 387 ~~~~~~~-~~~~lls~s-~-~tIrlWD~~t-G~~l~tL~gh~~~~V~a--~s~d-~~~lasg-~D~~IklWDl~ 452 (453)
..+..+. +..++++-. + +.|-|-|+.. +..+..|++|.+. |++ ..|. ..+|+|+ .|..+.|||+.
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~-VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQAS-VNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccc-ccceEecCCCCceeeecCCcceEEEEecc
Confidence 3444554 345665543 3 8899999986 4668899999999 995 4574 4588888 99999999985
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.1e-06 Score=86.70 Aligned_cols=185 Identities=12% Similarity=0.109 Sum_probs=106.1
Q ss_pred EEEeCCCceeeEEEEeeCC--CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEE-EcCC-
Q 046773 241 IDFTGCSRYWVGLYAGLAG--RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVA-CTSS- 314 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D--~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~va-s~d~- 314 (453)
..|||||++++ ++...+ ..|.+||+.+++... +..........+++|++. +.+ +.++
T Consensus 223 p~wSPDG~~La--~~s~~~g~~~L~~~dl~tg~~~~---------------lt~~~g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 223 PAWSPDGRKLA--YVSFENRKAEIFVQDIYTQVREK---------------VTSFPGINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred ceECCCCCEEE--EEEecCCCcEEEEEECCCCCeEE---------------ecCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence 68999999743 222222 358889999887211 111112234567888774 222 3344
Q ss_pred -cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCC-CccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEe
Q 046773 315 -RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENR-ELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGC 392 (453)
Q Consensus 315 -tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~d-g~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~ 392 (453)
.|.++|+++++. .++..+.....-.+++++|+.++..+.. + ...+.+++.++++. ..++..........++
T Consensus 286 ~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g-----~~~Iy~~dl~~g~~-~~Lt~~g~~~~~~~~S 358 (448)
T PRK04792 286 PEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGG-----KPQIYRVNLASGKV-SRLTFEGEQNLGGSIT 358 (448)
T ss_pred eEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCC-----CceEEEEECCCCCE-EEEecCCCCCcCeeEC
Confidence 488889998753 3332222222235688899888766543 3 11455556666653 3444444334456788
Q ss_pred eCCCeEEEEeC--C--eEEEEECCCCeEEEEeccc-CCceEEEEecCCCEEEEE--eCCc--EEEEec
Q 046773 393 MNQGYALMCVE--G--VIRVWEVEGGEYMYSFRER-IGEEVIAFVGDDRHVAAS--CGTN--IHLWDF 451 (453)
Q Consensus 393 ~~~~~lls~s~--~--tIrlWD~~tG~~l~tL~gh-~~~~V~a~s~d~~~lasg--~D~~--IklWDl 451 (453)
|++++++..+. + .|.++|+.+|+. ..+... .+. --+++|||+.|+-. .++. +.++++
T Consensus 359 pDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~~d~-~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 359 PDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTRLDE-SPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCCCCC-CceECCCCCEEEEEEecCCceEEEEEEC
Confidence 99998876543 3 566679988865 333322 111 11789999988654 4444 555554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.7e-06 Score=84.84 Aligned_cols=222 Identities=8% Similarity=0.039 Sum_probs=125.9
Q ss_pred cEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCCC---CEEEEEeecCC-cceEEeeecceecCc
Q 046773 165 AVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDG---DIHVAVIDDVA-NETRTAHFGSVMDDG 238 (453)
Q Consensus 165 TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~---tIkvWd~~~~g-~~~~~~~~~~v~~~~ 238 (453)
.|.++|.+.+. .+.+..+.. .+.. .++||+.|++.+.+. .|.+||+.+ | ...+....+..
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~--------~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~~~l~~~~g~~---- 245 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSRE--------PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRREQITNFEGLN---- 245 (430)
T ss_pred EEEEECCCCCC-ceEEecCCC--------ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCEEEccCCCCCc----
Confidence 57788887654 444543322 2333 345688898887653 477888876 4 22222111111
Q ss_pred eEEEEeCCCceeeEEEEeeCCC--eEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcC-
Q 046773 239 VLIDFTGCSRYWVGLYAGLAGR--AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTS- 313 (453)
Q Consensus 239 ~~v~Fs~dg~~~~~LaSgS~D~--tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d- 313 (453)
....|+|||+.++ ++.+.++ .|.++|+++++... |..+........|+|++. +..+..
T Consensus 246 ~~~~~SpDG~~la--~~~~~~g~~~Iy~~d~~~~~~~~---------------lt~~~~~~~~~~~spDg~~i~f~s~~~ 308 (430)
T PRK00178 246 GAPAWSPDGSKLA--FVLSKDGNPEIYVMDLASRQLSR---------------VTNHPAIDTEPFWGKDGRTLYFTSDRG 308 (430)
T ss_pred CCeEECCCCCEEE--EEEccCCCceEEEEECCCCCeEE---------------cccCCCCcCCeEECCCCCEEEEEECCC
Confidence 1378999999743 3444444 68888999887321 222222334467887753 333432
Q ss_pred --CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEE
Q 046773 314 --SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMG 391 (453)
Q Consensus 314 --~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~ 391 (453)
..|.++|+.+++.. ++..........+++++|+.++..+... ....+.++|+.+++. ..++.. .......+
T Consensus 309 g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~----~~~~l~~~dl~tg~~-~~lt~~-~~~~~p~~ 381 (430)
T PRK00178 309 GKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQD----GNFHVAAQDLQRGSV-RILTDT-SLDESPSV 381 (430)
T ss_pred CCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccC----CceEEEEEECCCCCE-EEccCC-CCCCCceE
Confidence 25888899887642 2221122233457889999887766433 112567788888754 333322 12234578
Q ss_pred eeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCC
Q 046773 392 CMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIG 425 (453)
Q Consensus 392 ~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~ 425 (453)
+|+++.++.++. ..|.+.++. |+..+.|..+.+
T Consensus 382 spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g 418 (430)
T PRK00178 382 APNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQG 418 (430)
T ss_pred CCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCC
Confidence 899988876553 467777885 444455554433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8e-07 Score=93.74 Aligned_cols=233 Identities=15% Similarity=0.102 Sum_probs=144.9
Q ss_pred CCCCCCCCeEEEEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~ 212 (453)
+||. |. |+|++++ |++.|||+.|+.|-||+-. .-.+|+--|. ..+.++.|.+ ..|+|+|...
T Consensus 50 KgHK--Dt--VycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~-------D~IQCMsFNP~~h~LasCsLsd 115 (1081)
T KOG1538|consen 50 KGHK--DT--VYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHN-------DAIQCMSFNPITHQLASCSLSD 115 (1081)
T ss_pred cccc--ce--EEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccC-------CeeeEeecCchHHHhhhcchhh
Confidence 5998 45 7899986 6899999999999999863 2234442232 3678888885 6799988753
Q ss_pred CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 213 DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
.-+|..+... ..-|...+ ....-++..||++ |+-|-.|+||.|-|-...+...-.. | -|
T Consensus 116 -FglWS~~qK~---V~K~kss~--R~~~CsWtnDGqy---lalG~~nGTIsiRNk~gEek~~I~R---p---------gg 174 (1081)
T KOG1538|consen 116 -FGLWSPEQKS---VSKHKSSS--RIICCSWTNDGQY---LALGMFNGTISIRNKNGEEKVKIER---P---------GG 174 (1081)
T ss_pred -ccccChhhhh---HHhhhhhe--eEEEeeecCCCcE---EEEeccCceEEeecCCCCcceEEeC---C---------CC
Confidence 3467654411 11111000 0112578889997 8889999999998754433111000 0 12
Q ss_pred eccceeEEEEcCCc-------eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 293 FTEFVGRVRVTSHE-------SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 293 h~~~v~~v~~s~~~-------~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
-.++|.+|+++|.. +.++....|...+-+. |+.+-..+.-+-.-.+.+.-++|+.+..+++|+ ..
T Consensus 175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk-------~L 246 (1081)
T KOG1538|consen 175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDK-------QL 246 (1081)
T ss_pred CCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCC-------ce
Confidence 34789999998643 2333444666666665 233321100000111344557899999999998 77
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE-eCCeEEEEECCC
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC-VEGVIRVWEVEG 413 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~-s~~tIrlWD~~t 413 (453)
+++.- .|-.+.++.-.+.|+-++...|++.+.+.+ -+|||--+++..
T Consensus 247 ~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 247 SLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 77732 344555555556788889999988877654 459998888753
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-06 Score=89.60 Aligned_cols=189 Identities=12% Similarity=0.074 Sum_probs=121.7
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecc----cccCCcceeeeeeeeeecccee------EEEEcCCce--EEEEcCCcEEEEE
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGG----DLTDHNTVMGWRMLTEFTEFVG------RVRVTSHES--AVACTSSRVITFD 320 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~----~l~~~~~v~~w~~l~~h~~~v~------~v~~s~~~~--~vas~d~tIrlWD 320 (453)
+|..+.|+-+||||.++++...+- .+.+..+..-|. |..-..+.. ....+.++. +.+...+.|-+++
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-LSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-EEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 566778999999999998844321 111212222232 110000000 001123333 3333457899999
Q ss_pred CCCCceEEEEeeccCCeEEEEEEec--CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeE
Q 046773 321 LRNQGMVLGERGYGRGLYVTSVDVN--AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYA 398 (453)
Q Consensus 321 l~t~~~~~~~~g~~~~~~v~~~~~~--g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~l 398 (453)
+..|+.-..+..-.|...|++.... -..+.|+++|. .+-.|+..+...++.....+..+.++..++|++.+
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~-------~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADL-------KVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCce-------eEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9987654445433445566665433 34577888888 88889998888888888777778889999997765
Q ss_pred EEEeCCeEEEEECCCCeEEEEecccCCceEEEEe--cC-----CCEEEEE--eCCcEEEEec
Q 046773 399 LMCVEGVIRVWEVEGGEYMYSFRERIGEEVIAFV--GD-----DRHVAAS--CGTNIHLWDF 451 (453)
Q Consensus 399 ls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~a~s--~d-----~~~lasg--~D~~IklWDl 451 (453)
+ .++++|++||+++++.+.+|+||.+. |.+++ .+ |.++.++ .+.-|-+|-+
T Consensus 160 ~-~as~~ik~~~~~~kevv~~ftgh~s~-v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 160 L-TASRQIKVLDIETKEVVITFTGHGSP-VRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred E-eccceEEEEEccCceEEEEecCCCcc-eEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 5 44489999999999999999999998 88544 33 5565544 5666667743
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.4e-06 Score=78.36 Aligned_cols=116 Identities=11% Similarity=0.145 Sum_probs=82.9
Q ss_pred cceeEEEEcCCce--EEEEc--CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc
Q 046773 295 EFVGRVRVTSHES--AVACT--SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 295 ~~v~~v~~s~~~~--~vas~--d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
++|..++++|++. ++..+ +..|.|||++ ++.+..+. ........++|+|+.+++++.++ ....+.+||.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n----~~G~l~~wd~ 132 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGN----LNGDLEFWDV 132 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccC----CCcEEEEEEC
Confidence 5699999998763 33332 4689999997 34444432 22333467899999999987543 0127999999
Q ss_pred CCCeeEEEEEecCCCeeEEEEeeCCCeEEEEe-------CCeEEEEECCCCeEEEEe
Q 046773 371 DTFEEVCRFSLRADRNVNVMGCMNQGYALMCV-------EGVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 371 ~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s-------~~tIrlWD~~tG~~l~tL 420 (453)
++.+.+.++.. .....+.++|+|+++++++ ++.++||+. +|++++..
T Consensus 133 ~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 133 RKKKKISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCCEEeecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 99888877642 2367889999999999764 278999998 48887654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.8e-07 Score=87.50 Aligned_cols=155 Identities=11% Similarity=0.085 Sum_probs=99.5
Q ss_pred EEEEEec---CCEEEEEeCCCcEEEEECCCCeE---EEEecCCCCCccccccceEEEEEEcC---CeEEEEeCCCCEEEE
Q 046773 147 CRCLTLS---DLYLACGFADGAVRLFDLTTRLH---VRTFRPQHSDRLGQFSRAVSGIIITD---SQLIFATLDGDIHVA 217 (453)
Q Consensus 147 v~~lafs---~~~LaSGS~D~TIrlWD~~tg~~---~~tl~gh~~~~~~~~s~~V~~i~f~g---~~LasgS~D~tIkvW 217 (453)
.+++.++ +++|.|.|-|.|.-|||+++|.. ...|-.|.+ .|-.|+|.. +..||.+.||.+|+.
T Consensus 153 lTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK--------EV~DIaf~~~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK--------EVYDIAFLKGSRDVFASVGADGSVRMF 224 (364)
T ss_pred ccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc--------ceeEEEeccCccceEEEecCCCcEEEE
Confidence 5666665 57999999999999999999843 334667766 466688863 467899999999999
Q ss_pred EeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCC-CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccc
Q 046773 218 VIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG-RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 218 d~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D-~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
|+.... |.-....+.- ...-++..+.+-+-.+.+|+=..| ..|.|-|++-.++.. -.|++|.+.
T Consensus 225 DLR~le-HSTIIYE~p~-~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv-------------a~L~~H~a~ 289 (364)
T KOG0290|consen 225 DLRSLE-HSTIIYEDPS-PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV-------------ARLRNHQAS 289 (364)
T ss_pred Eecccc-cceEEecCCC-CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce-------------ehhhcCccc
Confidence 997621 1111111100 001122222221111224443333 468899998766321 247899999
Q ss_pred eeEEEEcCCc---eEEEEcCCcEEEEECCCC
Q 046773 297 VGRVRVTSHE---SAVACTSSRVITFDLRNQ 324 (453)
Q Consensus 297 v~~v~~s~~~---~~vas~d~tIrlWDl~t~ 324 (453)
||.++..|.. +.++++|..+-+||+.+.
T Consensus 290 VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 290 VNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred ccceEecCCCCceeeecCCcceEEEEecccc
Confidence 9999998754 445555678999999864
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.5e-06 Score=84.31 Aligned_cols=251 Identities=12% Similarity=0.119 Sum_probs=159.0
Q ss_pred EEEEEec--C--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLS--D--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs--~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~ 222 (453)
+..+.|. + ..|+-.+.|..+...+++.+.|...+.--....+ ....|.+++..+..|++|-.++.+.+|....+
T Consensus 58 is~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l--~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~ 135 (412)
T KOG3881|consen 58 ISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSL--GTKSIKGLKLADGTLITCVSSGNLQVRHDKSG 135 (412)
T ss_pred hhhheeecCCceeEeeccccCcccccccccCCcccccccccccccc--ccccccchhhcCCEEEEEecCCcEEEEeccCC
Confidence 5566664 3 3566667888888888888887766511000000 11245566666778999999999999998741
Q ss_pred Cc--ce---EEeeecceecCceEEEEeCCCceeeEEEEeeCC--CeEEEeeCCCCc-EEecccccCCcceeeeeeeeeec
Q 046773 223 AN--ET---RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG--RAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFT 294 (453)
Q Consensus 223 g~--~~---~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D--~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~ 294 (453)
-. .. ++.+.+ + ..|.-++.... .+|+|+.. +.++|||++..+ ++.+-.++.+. .+ |+ -.
T Consensus 136 d~hss~l~~la~g~g-~----~~~r~~~~~p~--Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~--L~---Lr-VP 202 (412)
T KOG3881|consen 136 DLHSSKLIKLATGPG-L----YDVRQTDTDPY--IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR--LG---LR-VP 202 (412)
T ss_pred ccccccceeeecCCc-e----eeeccCCCCCc--eEecCchhcccceeeeecccceeeeeccCCCCcc--cc---ce-ee
Confidence 11 11 111111 0 11222333333 35678887 889999999876 55543333221 11 11 11
Q ss_pred cceeEEEEcCC---ceEEEEc-CCcEEEEECCCCceEEE-EeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEE
Q 046773 295 EFVGRVRVTSH---ESAVACT-SSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 295 ~~v~~v~~s~~---~~~vas~-d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
-|+..++|-+. ..++.+. .+.+|++|.+.++.... +..-.+......+.|+++.+.++..-+ .+...|
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g-------~l~~FD 275 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKG-------QLAKFD 275 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccc-------hhheec
Confidence 34556777543 4555555 47899999998754422 222233445566789999999998888 888999
Q ss_pred cCCCeeEEE-EEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEE
Q 046773 370 VDTFEEVCR-FSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYS 419 (453)
Q Consensus 370 ~~tg~~v~~-l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~t 419 (453)
...+..+.. +.+-...++++.-+|...++++|+- +.|||.|++|.+.|+.
T Consensus 276 ~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 276 LRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 988765433 5555566888888888788888876 9999999999777654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-05 Score=77.22 Aligned_cols=94 Identities=11% Similarity=0.064 Sum_probs=76.2
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec--CCCeeEEEE
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR--ADRNVNVMG 391 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~--~~~v~~~~~ 391 (453)
+.|.|||+.+-+...+...|...+.+.+|+++|..+|+||..| ..|||..+.+|+.+.+|.-. +-.+.+++|
T Consensus 153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG------TVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKG------TVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCc------eEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 7899999998655444566777788888999999999999888 26899999999998887532 234778999
Q ss_pred eeCCCeEEEEeC-CeEEEEECCC
Q 046773 392 CMNQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 392 ~~~~~~lls~s~-~tIrlWD~~t 413 (453)
++++.+|.+++. +||.|.-+++
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEecc
Confidence 999998877777 9999997764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.8e-05 Score=83.58 Aligned_cols=224 Identities=10% Similarity=0.044 Sum_probs=124.2
Q ss_pred CcEEEEECCCCeEEEEecCCCCCccccccceEE--EEEEcCCeEEEEeCC-C--CEEEEEeecCC-cceEEeeecceecC
Q 046773 164 GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVS--GIIITDSQLIFATLD-G--DIHVAVIDDVA-NETRTAHFGSVMDD 237 (453)
Q Consensus 164 ~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~--~i~f~g~~LasgS~D-~--tIkvWd~~~~g-~~~~~~~~~~v~~~ 237 (453)
..|.++|...... +.+..+.. .+. .+++||++|++.+.+ + .|.++|+.+ | ...+....+.
T Consensus 198 ~~l~i~d~dG~~~-~~l~~~~~--------~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-g~~~~lt~~~g~---- 263 (448)
T PRK04792 198 YQLMIADYDGYNE-QMLLRSPE--------PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-QVREKVTSFPGI---- 263 (448)
T ss_pred eEEEEEeCCCCCc-eEeecCCC--------cccCceECCCCCEEEEEEecCCCcEEEEEECCC-CCeEEecCCCCC----
Confidence 3677778766543 44432221 122 245678889887654 3 366777766 4 2222211111
Q ss_pred ceEEEEeCCCceeeEEEEeeCCCe--EEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc-
Q 046773 238 GVLIDFTGCSRYWVGLYAGLAGRA--FHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT- 312 (453)
Q Consensus 238 ~~~v~Fs~dg~~~~~LaSgS~D~t--IrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~- 312 (453)
....+|+|||+.+ +++.+.++. |.++|+++++.. .+..+........|+|++. +..+.
T Consensus 264 ~~~~~wSPDG~~L--a~~~~~~g~~~Iy~~dl~tg~~~---------------~lt~~~~~~~~p~wSpDG~~I~f~s~~ 326 (448)
T PRK04792 264 NGAPRFSPDGKKL--ALVLSKDGQPEIYVVDIATKALT---------------RITRHRAIDTEPSWHPDGKSLIFTSER 326 (448)
T ss_pred cCCeeECCCCCEE--EEEEeCCCCeEEEEEECCCCCeE---------------ECccCCCCccceEECCCCCEEEEEECC
Confidence 1136899999974 345566664 777799888732 1222223345567888763 33343
Q ss_pred CC--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEE
Q 046773 313 SS--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVM 390 (453)
Q Consensus 313 d~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~ 390 (453)
++ .|.++|+.+++.. .+........-.+++++|+.++..+.+. ....|-+.++++++. ..++... ......
T Consensus 327 ~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~----g~~~I~~~dl~~g~~-~~lt~~~-~d~~ps 399 (448)
T PRK04792 327 GGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTN----GKFNIARQDLETGAM-QVLTSTR-LDESPS 399 (448)
T ss_pred CCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecC----CceEEEEEECCCCCe-EEccCCC-CCCCce
Confidence 23 4777788887532 2221222222357899999887765433 011333456666653 2333221 122346
Q ss_pred EeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCCc
Q 046773 391 GCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 391 ~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
++|++++++..+. ..+.++|+ +|+..+.+..+.+.
T Consensus 400 ~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~ 438 (448)
T PRK04792 400 VAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGE 438 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCC
Confidence 8899998876543 45788887 57777777655443
|
|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-08 Score=72.70 Aligned_cols=46 Identities=26% Similarity=0.572 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhh
Q 046773 47 EALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRR 96 (453)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~ 96 (453)
+.||.|+..+|+.|++ .++|+++++||+.|+.++.++.+|+++|.+
T Consensus 2 ~~LP~Eil~~If~~L~----~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r 47 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLD----PRDLLRLSLVCRRWRRIANDNSLWRRLCLR 47 (47)
T ss_dssp CCS-HHHHHHHHTTS-----HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred hHhHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence 4699999999999986 779999999999999999998999998853
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00092 Score=68.13 Aligned_cols=270 Identities=14% Similarity=0.118 Sum_probs=146.0
Q ss_pred EEEEeCC----CcEEEEEC--CCCeEE--EEecCCCCCccccccceEEEEEE--cCCeEEEEeC----CCCEEEEEeecC
Q 046773 157 LACGFAD----GAVRLFDL--TTRLHV--RTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATL----DGDIHVAVIDDV 222 (453)
Q Consensus 157 LaSGS~D----~TIrlWD~--~tg~~~--~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~----D~tIkvWd~~~~ 222 (453)
+..|||. +.|.++++ ++|+.. .++.... .-+.+++ ++++|.+... ++.|-.+.++..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~---------~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~ 72 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGE---------NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD 72 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESS---------SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCC---------CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC
Confidence 4556666 57777777 555532 2221111 1122555 5677777655 457888887753
Q ss_pred -C-cceEEeeecceecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCCC-CcEEec-----ccccCCcceeeeeeeeee
Q 046773 223 -A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQA-EEVFVG-----GDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 223 -g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~t-g~~~~g-----~~l~~~~~v~~w~~l~~h 293 (453)
| +..+.... ..-...+.|+++|++++ |+++. .+++|.++++.. |.+..- +...+++ ..+.-
T Consensus 73 ~g~L~~~~~~~-~~g~~p~~i~~~~~g~~---l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~------~~rq~ 142 (345)
T PF10282_consen 73 TGTLTLLNSVP-SGGSSPCHIAVDPDGRF---LYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPN------PDRQE 142 (345)
T ss_dssp TTEEEEEEEEE-ESSSCEEEEEECTTSSE---EEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESS------TTTTS
T ss_pred cceeEEeeeec-cCCCCcEEEEEecCCCE---EEEEEccCCeEEEEEccCCcccceeeeecccCCCCCc------ccccc
Confidence 3 11111110 00012245899999997 45554 589999999987 552110 0000000 00111
Q ss_pred ccceeEEEEcCCce-EEEEc--CCcEEEEECCCCc--eEE--EE-eeccCCeEEEEEEecCCEEEEEe-CCCccccCcce
Q 046773 294 TEFVGRVRVTSHES-AVACT--SSRVITFDLRNQG--MVL--GE-RGYGRGLYVTSVDVNAEAYIVVE-NRELENQNRRL 364 (453)
Q Consensus 294 ~~~v~~v~~s~~~~-~vas~--d~tIrlWDl~t~~--~~~--~~-~g~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~~~~ 364 (453)
....-++.|+|++. +.+.+ .+.|.++++.... ... .. ...+.+-.=..|+++++.+.+.. .++ +
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~-------~ 215 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN-------T 215 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT-------E
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC-------c
Confidence 23445789999864 33332 3689999998754 211 11 11112222356888887765543 444 8
Q ss_pred EEEEEcC--CCe--eEEEEEecC------CCeeEEEEeeCCCeEEEEeC--CeEEEEEC--CCCeE--EEEecccCC-ce
Q 046773 365 AIVRRVD--TFE--EVCRFSLRA------DRNVNVMGCMNQGYALMCVE--GVIRVWEV--EGGEY--MYSFRERIG-EE 427 (453)
Q Consensus 365 i~Iw~~~--tg~--~v~~l~~~~------~~v~~~~~~~~~~~lls~s~--~tIrlWD~--~tG~~--l~tL~gh~~-~~ 427 (453)
|.+.+++ ++. .++.+...+ .....+.++++++++.++.. ++|-++++ ++|+. +..+.-.-. .+
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr 295 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPR 295 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEE
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCcc
Confidence 8888887 442 333333221 13456788999999877654 89999999 34533 333321111 21
Q ss_pred EEEEecCCCEEEEE--eCCcEEEEecC
Q 046773 428 VIAFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 428 V~a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
=.+|+|||++|+.+ .+++|.++++.
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 22778999998766 67899999764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.8e-07 Score=85.96 Aligned_cols=152 Identities=11% Similarity=0.129 Sum_probs=101.0
Q ss_pred eeccceeEEEEcCCceEEEEc-CCcEEEEECCCCceEEEE------eeccCCeEEEEEEe--cCCEEEEEeCCCccccCc
Q 046773 292 EFTEFVGRVRVTSHESAVACT-SSRVITFDLRNQGMVLGE------RGYGRGLYVTSVDV--NAEAYIVVENRELENQNR 362 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~vas~-d~tIrlWDl~t~~~~~~~------~g~~~~~~v~~~~~--~g~~l~s~s~dg~~~~~~ 362 (453)
.+.+.++||-+.|++.-++|. |..|.+|+++....+..+ .++.+...--..+| +++.++ ...|+
T Consensus 121 eavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~------ 193 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDS------ 193 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCC------
Confidence 344678999999988666664 578999999987553222 11222211122344 344444 45667
Q ss_pred ceEEEEEcCCCeeEEEE-EecCCCeeEEEEeeCCCeE-EEEeC-CeEEEEECCC-CeEEEEecccCCceEEEEe--c-CC
Q 046773 363 RLAIVRRVDTFEEVCRF-SLRADRNVNVMGCMNQGYA-LMCVE-GVIRVWEVEG-GEYMYSFRERIGEEVIAFV--G-DD 435 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l-~~~~~~v~~~~~~~~~~~l-ls~s~-~tIrlWD~~t-G~~l~tL~gh~~~~V~a~s--~-d~ 435 (453)
+++-||..|-.+...+ ..|...|+.+-|.|+-.+. ++|++ +-|||||+.. ...+.+|++|..+ ||++. | -+
T Consensus 194 -tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW-vW~VRfn~~hd 271 (370)
T KOG1007|consen 194 -TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW-VWAVRFNPEHD 271 (370)
T ss_pred -cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE-EEEEEecCccc
Confidence 9999998875443332 3345557777777765544 46677 9999999985 4668999999999 99765 3 33
Q ss_pred CEEEEE-eCCcEEEEecC
Q 046773 436 RHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 436 ~~lasg-~D~~IklWDl~ 452 (453)
+.|.|+ +|..|.||..+
T Consensus 272 qLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCAS 289 (370)
T ss_pred eEEEecCCCceeEEEecc
Confidence 456677 99999999654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00019 Score=68.17 Aligned_cols=220 Identities=14% Similarity=0.189 Sum_probs=125.9
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEee-ecceecCceE
Q 046773 162 ADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAH-FGSVMDDGVL 240 (453)
Q Consensus 162 ~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~-~~~v~~~~~~ 240 (453)
.+++|..||+.+|+.+....-... .+ ..+.....++..++.++.++.+..+|..+ |....+.- .+.+.. .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~--~~---~~~~~~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~-~-- 71 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPG--IG---GPVATAVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDLPGPISG-A-- 71 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSS--CS---SEEETEEEETTEEEEEETTSEEEEEETTT-SEEEEEEECSSCGGS-G--
T ss_pred CCCEEEEEECCCCCEEEEEECCCC--CC---CccceEEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeeccccccc-e--
Confidence 378999999999999988742110 01 11211223677888888999999999877 61111111 111100 0
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee-eee---e-ccceeEEEEcCCceEEEEcCCc
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM-LTE---F-TEFVGRVRVTSHESAVACTSSR 315 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~-l~~---h-~~~v~~v~~s~~~~~vas~d~t 315 (453)
. ...+++ ++.++.|+.|..+|.++|+.+ |.. ... . ........+.++.++++..++.
T Consensus 72 ~-~~~~~~----v~v~~~~~~l~~~d~~tG~~~-------------W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 133 (238)
T PF13360_consen 72 P-VVDGGR----VYVGTSDGSLYALDAKTGKVL-------------WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK 133 (238)
T ss_dssp E-EEETTE----EEEEETTSEEEEEETTTSCEE-------------EEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE
T ss_pred e-eecccc----cccccceeeeEecccCCccee-------------eeeccccccccccccccCceEecCEEEEEeccCc
Confidence 1 111222 456668889999999999953 221 111 0 0112234445555666677899
Q ss_pred EEEEECCCCceEEEEeeccCC--eE-------EEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCe
Q 046773 316 VITFDLRNQGMVLGERGYGRG--LY-------VTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRN 386 (453)
Q Consensus 316 IrlWDl~t~~~~~~~~g~~~~--~~-------v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v 386 (453)
|...|+++|+.+-........ .. ...+...++.+...+.++ +.+.+ |..+++.+-... ....
T Consensus 134 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~-d~~tg~~~w~~~--~~~~ 204 (238)
T PF13360_consen 134 LVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAV-DLATGEKLWSKP--ISGI 204 (238)
T ss_dssp EEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEE-ETTTTEEEEEEC--SS-E
T ss_pred EEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEE-ECCCCCEEEEec--CCCc
Confidence 999999999776554222211 10 122333344666656566 14667 999998654322 2222
Q ss_pred eEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEE
Q 046773 387 VNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMY 418 (453)
Q Consensus 387 ~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~ 418 (453)
.. ....+++.+...+. +.|..||++||+.+-
T Consensus 205 ~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 205 YS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred cC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 22 12346677776665 999999999999764
|
... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-05 Score=81.69 Aligned_cols=188 Identities=9% Similarity=-0.018 Sum_probs=108.1
Q ss_pred EEEeCCCceeeEEEEeeCCC--eEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--Ec-CC-
Q 046773 241 IDFTGCSRYWVGLYAGLAGR--AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CT-SS- 314 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~--tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~-d~- 314 (453)
-.|||||+....++....++ .|-+.|+.+|+.. .+....+.....+++|++..++ ++ ++
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~---------------~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~ 254 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK---------------KILALQGNQLMPTFSPRKKLLAFISDRYGN 254 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCce---------------EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 58999998644334433333 4666688888721 1112223334567898874333 32 12
Q ss_pred -c--EEEEECCCC--ceEEEEe-eccCCeEEEEEEecCCEEEEEeC-CCccccCcceEEEEEcC--C-CeeEEEEEecCC
Q 046773 315 -R--VITFDLRNQ--GMVLGER-GYGRGLYVTSVDVNAEAYIVVEN-RELENQNRRLAIVRRVD--T-FEEVCRFSLRAD 384 (453)
Q Consensus 315 -t--IrlWDl~t~--~~~~~~~-g~~~~~~v~~~~~~g~~l~s~s~-dg~~~~~~~~i~Iw~~~--t-g~~v~~l~~~~~ 384 (453)
. +.+||+.++ +....+. +......-.+++|+|+.++..+. ++ ..+||.++ . +.....++....
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g-------~~~ly~~~~~~~g~~~~~lt~~~~ 327 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG-------RPRIYIMQIDPEGQSPRLLTKKYR 327 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC-------CceEEEEECcccccceEEeccCCC
Confidence 2 455888763 2222221 11111122578999998877664 44 45666543 2 233444554444
Q ss_pred CeeEEEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEE-EE-e--CCcEEEEecC
Q 046773 385 RNVNVMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVA-AS-C--GTNIHLWDFG 452 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~la-sg-~--D~~IklWDl~ 452 (453)
.+....++||+++++.++. ..|.+||+++|++.....+ ... +. +++|||+.|+ ++ . +..|.++|+.
T Consensus 328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~-~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 328 NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PEN-KESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCC-ccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 4566788999998886653 5799999999977443222 222 22 6789999886 33 3 3567777763
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.5e-05 Score=79.00 Aligned_cols=222 Identities=11% Similarity=0.017 Sum_probs=125.2
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCC---CCEEEEEeecCC-cceEEeeecceec
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLD---GDIHVAVIDDVA-NETRTAHFGSVMD 236 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D---~tIkvWd~~~~g-~~~~~~~~~~v~~ 236 (453)
...|.++|...+. .+.+..+.. .+.. ++++|+.|++.+.+ .+|++||+.+ | ...+..+.+..
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~--------~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~~~~~~~~~~~-- 236 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSRE--------PILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQREKVASFPGMN-- 236 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCC--------ceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCEEEeecCCCCc--
Confidence 4567888886444 445543332 1222 44578889988764 3689999887 4 22222222211
Q ss_pred CceEEEEeCCCceeeEEEEeeCC--CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc
Q 046773 237 DGVLIDFTGCSRYWVGLYAGLAG--RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT 312 (453)
Q Consensus 237 ~~~~v~Fs~dg~~~~~LaSgS~D--~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~ 312 (453)
..++|+|||+.+ +++.+.+ ..|.+||+.+++.. .+..+.......+|+|++. +..+.
T Consensus 237 --~~~~~spDg~~l--~~~~~~~~~~~i~~~d~~~~~~~---------------~l~~~~~~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 237 --GAPAFSPDGSKL--AVSLSKDGNPDIYVMDLDGKQLT---------------RLTNGPGIDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred --cceEECCCCCEE--EEEECCCCCccEEEEECCCCCEE---------------ECCCCCCCCCCEEECCCCCEEEEEEC
Confidence 137899999873 3444444 45888999887631 1122222333456777653 33343
Q ss_pred C-C--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 313 S-S--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 313 d-~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
. + .|.++|+.+++. ..+..+........++++++.++..+.++ ....+.+++.+++.. ..+.. .......
T Consensus 298 ~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~----~~~~i~~~d~~~~~~-~~l~~-~~~~~~p 370 (417)
T TIGR02800 298 RGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREG----GGFNIAVMDLDGGGE-RVLTD-TGLDESP 370 (417)
T ss_pred CCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccC----CceEEEEEeCCCCCe-EEccC-CCCCCCc
Confidence 2 2 588889987653 23322233333456788898888776543 112566777777543 22222 1223445
Q ss_pred EEeeCCCeEEEEeC----CeEEEEECCCCeEEEEeccc
Q 046773 390 MGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 390 ~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh 423 (453)
.+++++++++..+. ..+.+.+. +|+....+..+
T Consensus 371 ~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~ 407 (417)
T TIGR02800 371 SFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLG 407 (417)
T ss_pred eECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCC
Confidence 78889998886654 34555554 45555555433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-06 Score=89.14 Aligned_cols=241 Identities=15% Similarity=0.159 Sum_probs=146.2
Q ss_pred EEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEE---eeecceecCceEEEEeCCCceeeE
Q 046773 178 RTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRT---AHFGSVMDDGVLIDFTGCSRYWVG 252 (453)
Q Consensus 178 ~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~---~~~~~v~~~~~~v~Fs~dg~~~~~ 252 (453)
..|.+|++ .|..|.|. |+.|+|||.|..|.||||.. +...+. +|...+...+ .|-|+.|. .
T Consensus 136 ~kL~~H~G--------cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~-~~~~l~f~SGH~~NvfQaK-FiP~s~d~----t 201 (559)
T KOG1334|consen 136 KKLNKHKG--------CVNTVHFNQRGDVLASGSDDLQVVVWDWVS-GSPKLSFESGHCNNVFQAK-FIPFSGDR----T 201 (559)
T ss_pred hcccCCCC--------ccceeeecccCceeeccCccceEEeehhhc-cCcccccccccccchhhhh-ccCCCCCc----C
Confidence 45666664 68888886 88999999999999999987 433344 4544443322 35566663 3
Q ss_pred EEEeeCCCeEEEeeCC-CCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC---ceEEEEcCCcEEEEECCCCceE-
Q 046773 253 LYAGLAGRAFHIWDRQ-AEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH---ESAVACTSSRVITFDLRNQGMV- 327 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~-tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~---~~~vas~d~tIrlWDl~t~~~~- 327 (453)
|++.+.|+.||+=.+- +|.+- ++ ..+..|.++|..+++.|+ .+.+++.|+.++-.|++++.-.
T Consensus 202 i~~~s~dgqvr~s~i~~t~~~e--------~t----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILETGYVE--------NT----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred ceeccccCceeeeeecccccee--------cc----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 7888999999986543 33321 00 224567788988887654 4566667888999999876321
Q ss_pred -EEEeeccCC--eEE--EEEEecCC-EEEEEeCCCccccCcceEEEEEcCCCe------eEEEEEe------cCCCeeEE
Q 046773 328 -LGERGYGRG--LYV--TSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTFE------EVCRFSL------RADRNVNV 389 (453)
Q Consensus 328 -~~~~g~~~~--~~v--~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~------~v~~l~~------~~~~v~~~ 389 (453)
...+-+... +.. .+++|... .++++..|. -+||+|...-. .+..|.. .+-.|..+
T Consensus 270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq-------f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl 342 (559)
T KOG1334|consen 270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ-------FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL 342 (559)
T ss_pred eeeeeccCCccceeeeeEecCCCCccccccCChhh-------hhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence 111111111 222 33445544 456666666 66777654211 1122211 12236677
Q ss_pred EEeeCCCeEEEE-eCCeEEEEECC--CC----------eEEE-EecccCCc----eEEEEecCCCEEEEEeC-CcEEEEe
Q 046773 390 MGCMNQGYALMC-VEGVIRVWEVE--GG----------EYMY-SFRERIGE----EVIAFVGDDRHVAASCG-TNIHLWD 450 (453)
Q Consensus 390 ~~~~~~~~lls~-s~~tIrlWD~~--tG----------~~l~-tL~gh~~~----~V~a~s~d~~~lasg~D-~~IklWD 450 (453)
+++-+++-++++ ++--|.|..-. .| ..+. .++||... .|+-|-|...+|+||+| |.|.|||
T Consensus 343 ~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 343 VYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred EecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 777566555544 45778888433 24 2222 26789654 25566788899999955 8999998
Q ss_pred c
Q 046773 451 F 451 (453)
Q Consensus 451 l 451 (453)
-
T Consensus 423 K 423 (559)
T KOG1334|consen 423 K 423 (559)
T ss_pred c
Confidence 4
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00011 Score=85.16 Aligned_cols=253 Identities=13% Similarity=0.084 Sum_probs=141.6
Q ss_pred EEEec---CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCc--ccccc----ceEEEEEEc--CCeEEEE-eCCCCEEE
Q 046773 149 CLTLS---DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDR--LGQFS----RAVSGIIIT--DSQLIFA-TLDGDIHV 216 (453)
Q Consensus 149 ~lafs---~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~--~~~~s----~~V~~i~f~--g~~Lasg-S~D~tIkv 216 (453)
-++++ +++.++-+..+.|+++|.. |+.+.++.+-.... -|.+. ..-.+|+++ +..|+.+ +..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 35664 3578888999999999986 55555554311100 01000 012457775 4555544 34466888
Q ss_pred EEeecCC-cceEEee--ec-----------ceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE--Eeccccc-
Q 046773 217 AVIDDVA-NETRTAH--FG-----------SVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV--FVGGDLT- 279 (453)
Q Consensus 217 Wd~~~~g-~~~~~~~--~~-----------~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~--~~g~~l~- 279 (453)
.|..+ + +.++.+- .+ .......-|+|+|++.. .+++.+.++.|++||..++.+ +.|....
T Consensus 651 id~~~-~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~--LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 651 IDFVN-ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK--VYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EecCC-CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe--EEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 88765 3 3333221 00 00111224899995433 245777889999999998873 3221100
Q ss_pred CCcceeeeeeeeeeccceeEEEEcCCc--eEEEEc-CCcEEEEECCCCceEEEEeecc---------------------C
Q 046773 280 DHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACT-SSRVITFDLRNQGMVLGERGYG---------------------R 335 (453)
Q Consensus 280 ~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~-d~tIrlWDl~t~~~~~~~~g~~---------------------~ 335 (453)
..+... .. .........|+++|++ ++++.. +++|++||+++++......+.. .
T Consensus 728 ~~~g~~--~~-~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 728 NLNGSS--GT-STSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred cCCCCc--cc-cccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 000000 00 0011234568898875 555544 4799999999865321110000 0
Q ss_pred CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC--------------CCeeEEEEeeCCCeEEEE
Q 046773 336 GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA--------------DRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 336 ~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~--------------~~v~~~~~~~~~~~lls~ 401 (453)
.-.-.+++++|+.+++-+.++ .|++||.+++... ++...+ +....+++++++..+++-
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~-------rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNH-------KIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCC-------EEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 001245677788777777777 9999999887543 222211 123456777787755555
Q ss_pred eC-CeEEEEECCCCeE
Q 046773 402 VE-GVIRVWEVEGGEY 416 (453)
Q Consensus 402 s~-~tIrlWD~~tG~~ 416 (453)
+. ++|++||+++++.
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 55 9999999999865
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-05 Score=83.92 Aligned_cols=253 Identities=11% Similarity=0.074 Sum_probs=147.0
Q ss_pred EEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE----cCCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII----TDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f----~g~~LasgS~D~tIkvWd~~~ 221 (453)
|.|+..+. .-+...+.|..+-+|.-.+.+....+.-.... =|....+.+... ..+.++-+|.|+.+.+-+-..
T Consensus 17 vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df--~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~~ 94 (737)
T KOG1524|consen 17 VCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDF--VPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKSA 94 (737)
T ss_pred EEeecccccceEEEeccCceEEEeecccchhhhhhhCCccc--CCccccccccccCCCCCcceEEEEcCCceEEEecccc
Confidence 45777765 34556666766666665455443333211110 000000000111 124677788999877654322
Q ss_pred CCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 222 VANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 222 ~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
.-.+....|.+.+.. -..+|||.- |.+.+.|+-||||.- +|-+. -++.....+|.|++
T Consensus 95 rVE~sv~AH~~A~~~----gRW~~dGtg---Llt~GEDG~iKiWSr-sGMLR--------------Stl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 95 RVERSISAHAAAISS----GRWSPDGAG---LLTAGEDGVIKIWSR-SGMLR--------------STVVQNEESIRCAR 152 (737)
T ss_pred hhhhhhhhhhhhhhh----cccCCCCce---eeeecCCceEEEEec-cchHH--------------HHHhhcCceeEEEE
Confidence 002333346554432 257888874 889999999999974 55411 12334457899999
Q ss_pred EcCCce-EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEec--CCEEEEEeCCCccccCcceEEEEEcCCCeeEEE
Q 046773 302 VTSHES-AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN--AEAYIVVENRELENQNRRLAIVRRVDTFEEVCR 378 (453)
Q Consensus 302 ~s~~~~-~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~--g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~ 378 (453)
..|+.. ++=|..+.+-+=-|..+..+++-+.| ...|.+++.+ .+.+++++.|- --||||.- |+.+.+
T Consensus 153 W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAH--DGiiL~~~W~~~s~lI~sgGED~-------kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 153 WAPNSNSIVFCQGGHISIKPLAANSKIIRWRAH--DGLVLSLSWSTQSNIIASGGEDF-------RFKIWDAQ-GANLFT 222 (737)
T ss_pred ECCCCCceEEecCCeEEEeecccccceeEEecc--CcEEEEeecCccccceeecCCce-------eEEeeccc-Cccccc
Confidence 998763 45466555555456555455554544 4566777655 56777777666 77888764 455555
Q ss_pred EEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcE
Q 046773 379 FSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNI 446 (453)
Q Consensus 379 l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~I 446 (453)
-..|+..+.++++.|+ ...+..|-+|+|+=.+ ..+. |. +.||||..++.| .-|.+
T Consensus 223 S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p-----------~~GS-ifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPE-KDYLLWSYNTARFSSP-----------RVGS-IFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred CChhccceeeeeeccc-cceeeeeeeeeeecCC-----------Cccc-eEEEEEcCCCceeeccccCceE
Confidence 4556666889999888 3333344477772222 2455 55 678999999988 65544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-05 Score=76.61 Aligned_cols=176 Identities=15% Similarity=0.201 Sum_probs=106.8
Q ss_pred CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEE
Q 046773 164 GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDF 243 (453)
Q Consensus 164 ~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~F 243 (453)
+.+-|||=...+|+.+|. +...|.+|.++.++|+. -..+.|+||.... .++.++.-.....+.+ +.+.
T Consensus 75 NkviIWDD~k~~~i~el~---------f~~~I~~V~l~r~riVv-vl~~~I~VytF~~-n~k~l~~~et~~NPkG-lC~~ 142 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS---------FNSEIKAVKLRRDRIVV-VLENKIYVYTFPD-NPKLLHVIETRSNPKG-LCSL 142 (346)
T ss_pred ceEEEEecccCcEEEEEE---------eccceeeEEEcCCeEEE-EecCeEEEEEcCC-ChhheeeeecccCCCc-eEee
Confidence 578899988888888875 22368889999887765 3678899998764 1111111111101111 1122
Q ss_pred eCCCceeeEEE-EeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--EcCCc-EEEE
Q 046773 244 TGCSRYWVGLY-AGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTSSR-VITF 319 (453)
Q Consensus 244 s~dg~~~~~La-SgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d~t-IrlW 319 (453)
.|.....+ || =|--=+.|+|=|+..-+. + .| ..+..|.+.+.||+++-++.++| |..+| ||||
T Consensus 143 ~~~~~k~~-LafPg~k~GqvQi~dL~~~~~--~----~p------~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIF 209 (346)
T KOG2111|consen 143 CPTSNKSL-LAFPGFKTGQVQIVDLASTKP--N----AP------SIINAHDSDIACVALNLQGTLVATASTKGTLIRIF 209 (346)
T ss_pred cCCCCceE-EEcCCCccceEEEEEhhhcCc--C----Cc------eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEE
Confidence 22211101 11 122225677777665431 0 01 23568989999999997776655 44576 9999
Q ss_pred ECCCCceEEEE-eeccC-CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 320 DLRNQGMVLGE-RGYGR-GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 320 Dl~t~~~~~~~-~g~~~-~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
|.++|+.+..+ +|..+ .++..+|+++...++.+|.-| |+.|..+.
T Consensus 210 dt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg-------TlHiF~l~ 256 (346)
T KOG2111|consen 210 DTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG-------TLHIFSLR 256 (346)
T ss_pred EcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC-------eEEEEEee
Confidence 99999876554 45333 344555667677888888888 99988654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.5e-07 Score=94.68 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=107.3
Q ss_pred eeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEec--CCEEEEEeCCCccccCcc
Q 046773 289 MLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVN--AEAYIVVENRELENQNRR 363 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~--g~~l~s~s~dg~~~~~~~ 363 (453)
.|+||++.||++..+.++.+++ |+|..+-|||.-..+.++.. +||+..+....|-|. .+.++++++|.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk------- 117 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK------- 117 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc-------
Confidence 4789999999999987775444 45567999999877766665 889887776667654 34567777777
Q ss_pred eEEEEEcCCC----------eeEEEEEecCCCeeEEEEeeCC-CeEEEEeC-CeEEEEECCCC-------eEEEEecccC
Q 046773 364 LAIVRRVDTF----------EEVCRFSLRADRNVNVMGCMNQ-GYALMCVE-GVIRVWEVEGG-------EYMYSFRERI 424 (453)
Q Consensus 364 ~i~Iw~~~tg----------~~v~~l~~~~~~v~~~~~~~~~-~~lls~s~-~tIrlWD~~tG-------~~l~tL~gh~ 424 (453)
-|++.|++.- +....+..|.+.|..++.+|++ ..+.+++. ||||=.|+..- .|...|..-.
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999998841 2233344556667788888866 45556776 99999999852 2322222212
Q ss_pred CceEE----EEecCC-CEEEEE-eCCcEEEEec
Q 046773 425 GEEVI----AFVGDD-RHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 425 ~~~V~----a~s~d~-~~lasg-~D~~IklWDl 451 (453)
...+. .++|.. .+|+.| +|.-++|+|.
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 22133 456744 578888 9999999983
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00016 Score=74.56 Aligned_cols=260 Identities=15% Similarity=0.085 Sum_probs=136.4
Q ss_pred EEEEEec--CCEEEEEe-CCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLS--DLYLACGF-ADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs--~~~LaSGS-~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~ 221 (453)
..++++| +++|+.+. .++++.|+|.+|.+.++++.......-. ....+.+|..+ ....+..-.|.- +||-++.
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~-~~~Rv~aIv~s~~~~~fVv~lkd~~-~I~vVdy 157 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG-PESRVAAIVASPGRPEFVVNLKDTG-EIWVVDY 157 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT-S---EEEEEE-SSSSEEEEEETTTT-EEEEEET
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc-cCCCceeEEecCCCCEEEEEEccCC-eEEEEEe
Confidence 4567775 56777665 6899999999999999988532110000 11245666433 333454445533 7776653
Q ss_pred CCcceE---EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE---ecccccCCcceeeeeeeeeec-
Q 046773 222 VANETR---TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF---VGGDLTDHNTVMGWRMLTEFT- 294 (453)
Q Consensus 222 ~g~~~~---~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~---~g~~l~~~~~v~~w~~l~~h~- 294 (453)
.....+ ....+.... -..|+|+||++ |++...++.|-++|.++++.. ..+..+.+.....| -|.
T Consensus 158 ~d~~~~~~~~i~~g~~~~---D~~~dpdgry~--~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~----php~ 228 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPH---DGGFDPDGRYF--LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF----PHPG 228 (369)
T ss_dssp TTSSCEEEEEEE--TTEE---EEEE-TTSSEE--EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE----EETT
T ss_pred ccccccceeeeccccccc---ccccCccccee--eecccccceeEEEeeccceEEEEeeccccccccccccc----cCCC
Confidence 111222 222222221 25899999983 455566779999999998722 11111111111101 121
Q ss_pred -cceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 295 -EFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 295 -~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
+++....-.....+..-+.+.+.+||..+.+.+.+....+... -...+|++..+.....-+. +..++.|.|..+.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~gl-Fi~thP~s~~vwvd~~~~~---~~~~v~viD~~tl 304 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGL-FIKTHPDSRYVWVDTFLNP---DADTVQVIDKKTL 304 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-S---SHT-EEEEECCGT
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcc-eeecCCCCccEEeeccCCC---CCceEEEEECcCc
Confidence 2333322122222233344567789999988877764444443 3455888888776522221 1238999999998
Q ss_pred eeEEEEEecCC-CeeEEEEeeCCCeEEEEe-C-C-eEEEEECCCCeEEEEec
Q 046773 374 EEVCRFSLRAD-RNVNVMGCMNQGYALMCV-E-G-VIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 374 ~~v~~l~~~~~-~v~~~~~~~~~~~lls~s-~-~-tIrlWD~~tG~~l~tL~ 421 (453)
+.+.++...+. .+..+-|+++|+++..+. + + .|.|+|.+|.+.+..++
T Consensus 305 ~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 305 KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 77666643332 356677888998876543 3 4 99999999999998875
|
... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.9e-06 Score=89.25 Aligned_cols=261 Identities=12% Similarity=0.139 Sum_probs=133.3
Q ss_pred hhHHHHHHHhhhhhcccccCceeeEEeeCCCCCCCCCCeEEEEEE-ec-CCEEEEEeCCCcEEEEECC-------CCeEE
Q 046773 107 TWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLT-LS-DLYLACGFADGAVRLFDLT-------TRLHV 177 (453)
Q Consensus 107 ~Wk~~y~~~~~~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~la-fs-~~~LaSGS~D~TIrlWD~~-------tg~~~ 177 (453)
-|+.+..++..-..|. +.++..+ ..+.||.+. |..++ .+ .+..+|+|.|+|||+|.+. |..|.
T Consensus 706 ~W~~ets~~e~dt~~l---n~~~irL-~nf~GH~~~----iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQ 777 (1034)
T KOG4190|consen 706 VWCAETSAAECDTDNL---NFDHIRL-CNFTGHQEK----IRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQ 777 (1034)
T ss_pred HHHhhhhHhhcCCccc---ccceeee-ecccCcHHH----hHHHHhcccccceeeccCCceEEEEEeccccCccccceee
Confidence 4666655554444332 2333322 123499843 55544 34 4688999999999999974 33466
Q ss_pred EEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEee
Q 046773 178 RTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL 257 (453)
Q Consensus 178 ~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS 257 (453)
.|++.|.. .|..| .|-.|-|+ ..|
T Consensus 778 fTY~aHkk--------~i~~i-------------------------------------------gfL~~lr~-----i~S 801 (1034)
T KOG4190|consen 778 FTYQAHKK--------PIHDI-------------------------------------------GFLADLRS-----IAS 801 (1034)
T ss_pred eEhhhccC--------cccce-------------------------------------------eeeeccce-----eee
Confidence 66665543 12222 22222222 235
Q ss_pred CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE-Ec-CCcEEEEECCCCc--eEEEE---
Q 046773 258 AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA-CT-SSRVITFDLRNQG--MVLGE--- 330 (453)
Q Consensus 258 ~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va-s~-d~tIrlWDl~t~~--~~~~~--- 330 (453)
.|+-|.+||.--|+.+.- .+.++. .+-...|.++---.+.++++ |+ ..|||+.|.+.++ |..+.
T Consensus 802 cD~giHlWDPFigr~Laq-~~dapk--------~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQ-MEDAPK--------EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred ccCcceeecccccchhHh-hhcCcc--------cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 667777777655552210 000000 00111222221111234444 33 4799999999875 32222
Q ss_pred eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEE-
Q 046773 331 RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRV- 408 (453)
Q Consensus 331 ~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrl- 408 (453)
.+...-....++.+.|++++.+=+.| .|-+-|..+|..+.....-.-....++ .|.+..++.+.. .++-+
T Consensus 873 ~~Pna~~R~iaVa~~GN~lAa~LSnG-------ci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVn 944 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKGNKLAAALSNG-------CIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVN 944 (1034)
T ss_pred CCCchheeEEEeccCcchhhHHhcCC-------cEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEee
Confidence 12222233455778899999888888 888888888865543211110011111 223334443333 78888
Q ss_pred EECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEE
Q 046773 409 WEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 409 WD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklW 449 (453)
|-.-.|...+++....+. ..-+..-|.-|+++ ..+.+.++
T Consensus 945 Whaldgimh~q~kpppep-ahflqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 945 WHALDGIMHLQDKPPPEP-AHFLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred ehhcCCeeeeccCCCCcc-hhhhhccCceeEEeccCcEEEEE
Confidence 998888887777543333 22122233445555 33334443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.2e-05 Score=73.89 Aligned_cols=153 Identities=10% Similarity=0.183 Sum_probs=100.7
Q ss_pred eeccceeEEEEcCCceEEEEcCCcEEEEECCCC-ceEEEEeeccCCeEEEEEEecCCEEEEEe---CCCccccCcceEEE
Q 046773 292 EFTEFVGRVRVTSHESAVACTSSRVITFDLRNQ-GMVLGERGYGRGLYVTSVDVNAEAYIVVE---NRELENQNRRLAIV 367 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~-~~~~~~~g~~~~~~v~~~~~~g~~l~s~s---~dg~~~~~~~~i~I 367 (453)
....+|.+|+++++.+++ --..+|.||.-.+. +.++.+.-.....-..++.+.-+.-+.+- --| .++|
T Consensus 92 ~f~~~I~~V~l~r~riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G-------qvQi 163 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRDRIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG-------QVQI 163 (346)
T ss_pred EeccceeeEEEcCCeEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc-------eEEE
Confidence 345789999999976555 45678999988743 43443311110011344444433333331 123 6777
Q ss_pred EEcCCCee--EEEEEecCCCeeEEEEeeCCCeEEEEeC-C-eEEEEECCCCeEEEEecccCC-ceEE--EEecCCCEEEE
Q 046773 368 RRVDTFEE--VCRFSLRADRNVNVMGCMNQGYALMCVE-G-VIRVWEVEGGEYMYSFRERIG-EEVI--AFVGDDRHVAA 440 (453)
Q Consensus 368 w~~~tg~~--v~~l~~~~~~v~~~~~~~~~~~lls~s~-~-tIrlWD~~tG~~l~tL~gh~~-~~V~--a~s~d~~~las 440 (453)
-++..-+. -..+..|.+.+..++...+|..++++|. | -|||||.++|+.++.|+--.+ ..|. +|+||..+||.
T Consensus 164 ~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 164 VDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred EEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 77654322 2456678887888888888888888887 5 569999999999999963222 1244 88999999998
Q ss_pred E-eCCcEEEEecC
Q 046773 441 S-CGTNIHLWDFG 452 (453)
Q Consensus 441 g-~D~~IklWDl~ 452 (453)
+ .-|||+|+.+.
T Consensus 244 sSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 244 SSDKGTLHIFSLR 256 (346)
T ss_pred EcCCCeEEEEEee
Confidence 8 67999998763
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00085 Score=63.61 Aligned_cols=173 Identities=14% Similarity=0.151 Sum_probs=111.3
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee-eeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEE-E
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM-LTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLG-E 330 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~-l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~-~ 330 (453)
|++++.++.|..||..||+.+ |.. +.+-... ......+.+++++.++.|..+|+++|+.+.+ .
T Consensus 39 v~~~~~~~~l~~~d~~tG~~~-------------W~~~~~~~~~~--~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~ 103 (238)
T PF13360_consen 39 VYVASGDGNLYALDAKTGKVL-------------WRFDLPGPISG--APVVDGGRVYVGTSDGSLYALDAKTGKVLWSIY 103 (238)
T ss_dssp EEEEETTSEEEEEETTTSEEE-------------EEEECSSCGGS--GEEEETTEEEEEETTSEEEEEETTTSCEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEE-------------EEeeccccccc--eeeecccccccccceeeeEecccCCcceeeeec
Confidence 566689999999999999943 111 1110000 1233455677778788999999999987766 2
Q ss_pred eec--cC-CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCe----------eEEEEeeCCCe
Q 046773 331 RGY--GR-GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRN----------VNVMGCMNQGY 397 (453)
Q Consensus 331 ~g~--~~-~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v----------~~~~~~~~~~~ 397 (453)
... .. ........+.++.++.+..++ .+...|..+|+.+-......... ..-... .++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 175 (238)
T PF13360_consen 104 LTSSPPAGVRSSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDGR 175 (238)
T ss_dssp E-SSCTCSTB--SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTTE
T ss_pred cccccccccccccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECCE
Confidence 221 11 112334556688888888888 89999999999888776643211 111111 2346
Q ss_pred EEEEeC-C-eEEEEECCCCeEEEEecccCCceEEE-EecCCCEEEEE-eCCcEEEEecC
Q 046773 398 ALMCVE-G-VIRVWEVEGGEYMYSFRERIGEEVIA-FVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 398 lls~s~-~-tIrlWD~~tG~~l~tL~gh~~~~V~a-~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+..++. + .+.+ |+++|+.+.... ... +.. +.+++..|... .|+.|..||+.
T Consensus 176 v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~-~~~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 176 VYVSSGDGRVVAV-DLATGEKLWSKP--ISG-IYSLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EEEECCTSSEEEE-ETTTTEEEEEEC--SS--ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred EEEEcCCCeEEEE-ECCCCCEEEEec--CCC-ccCCceeeCCEEEEEeCCCEEEEEECC
Confidence 555654 4 6888 999999775433 233 343 67788888777 79999999974
|
... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0001 Score=77.13 Aligned_cols=260 Identities=15% Similarity=0.135 Sum_probs=146.3
Q ss_pred EEEEEec--CC-EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLS--DL-YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs--~~-~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~LasgS~D~tIkvWd~~~ 221 (453)
++.+..+ +. .||||-|--.||++|+..-.. .|.-|... .-|.=+-.++ .+++.--.|++|.+=.-
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDa------e~V~feiLsDD~SK~v~L~~DR~IefHak-- 123 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDA------EVVDFEILSDDYSKSVFLQNDRTIEFHAK-- 123 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccc------cceeEEEeccchhhheEeecCceeeehhh--
Confidence 3444444 44 589999999999999976653 23333321 1122112233 35666666777644211
Q ss_pred CCcc-eEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE
Q 046773 222 VANE-TRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 222 ~g~~-~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
.|.+ ..+...-. .+...=-|+.| |+.++....|-=.|++.|+-+. .+.--.+.+|+|
T Consensus 124 ~G~hy~~RIP~~G--RDm~y~~~scD------ly~~gsg~evYRlNLEqGrfL~--------------P~~~~~~~lN~v 181 (703)
T KOG2321|consen 124 YGRHYRTRIPKFG--RDMKYHKPSCD------LYLVGSGSEVYRLNLEQGRFLN--------------PFETDSGELNVV 181 (703)
T ss_pred cCeeeeeecCcCC--ccccccCCCcc------EEEeecCcceEEEEcccccccc--------------ccccccccceee
Confidence 1211 11111000 00000012222 5555555667667898888431 122234678899
Q ss_pred EEcCCceEEEE-c-CCcEEEEECCCCceEEEE--e-------eccCCeEEEEEEecCCE--EEEEeCCCccccCcceEEE
Q 046773 301 RVTSHESAVAC-T-SSRVITFDLRNQGMVLGE--R-------GYGRGLYVTSVDVNAEA--YIVVENRELENQNRRLAIV 367 (453)
Q Consensus 301 ~~s~~~~~vas-~-d~tIrlWDl~t~~~~~~~--~-------g~~~~~~v~~~~~~g~~--l~s~s~dg~~~~~~~~i~I 367 (453)
.+++-.-++++ . ++.|-.||.++...+.++ . |......|+++.|+++. +++|++.| .+-|
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-------~v~i 254 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-------SVLI 254 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-------cEEE
Confidence 99875544443 3 689999999987544332 1 11122346777777654 57788999 8999
Q ss_pred EEcCCCeeEEEEEecCCC--eeEEEEeeC-CCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE
Q 046773 368 RRVDTFEEVCRFSLRADR--NVNVMGCMN-QGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 368 w~~~tg~~v~~l~~~~~~--v~~~~~~~~-~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg 441 (453)
+|+.+.+++..- -|... +..+.+-.. +.-.+.+.+ .++||||-.+|+....++- +.. ++ ++-|++-.+.++
T Consensus 255 yDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~-lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 255 YDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSD-LNDFCFVPGSGMFFTA 331 (703)
T ss_pred EEcccCCceeec-ccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cCC-cCceeeecCCceEEEe
Confidence 999887665332 22222 333333322 222334444 9999999999998877643 233 55 677888888778
Q ss_pred -eCCcEEE
Q 046773 442 -CGTNIHL 448 (453)
Q Consensus 442 -~D~~Ikl 448 (453)
.+..+..
T Consensus 332 ne~~~m~~ 339 (703)
T KOG2321|consen 332 NESSKMHT 339 (703)
T ss_pred cCCCccee
Confidence 5555443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-05 Score=76.79 Aligned_cols=249 Identities=9% Similarity=0.145 Sum_probs=138.8
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecC--C----cceEEeeeccee-------cCce-EEEEeCCCceeeEEEEee
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDV--A----NETRTAHFGSVM-------DDGV-LIDFTGCSRYWVGLYAGL 257 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~--g----~~~~~~~~~~v~-------~~~~-~v~Fs~dg~~~~~LaSgS 257 (453)
-+++|.|+ |..||+|..+|.+-+..-+.. + ....+.|...+. .+.+ .+...+++..-..|.| .
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls-t 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS-T 105 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe-c
Confidence 35667664 899999999998877643221 1 122333433221 0111 2455555544333555 5
Q ss_pred CCCeEEEeeCCCCc-EEeccccc---CCcceeeee------------------eeeeeccceeEEEEcCCc-eEEEEcCC
Q 046773 258 AGRAFHIWDRQAEE-VFVGGDLT---DHNTVMGWR------------------MLTEFTEFVGRVRVTSHE-SAVACTSS 314 (453)
Q Consensus 258 ~D~tIrvWD~~tg~-~~~g~~l~---~~~~v~~w~------------------~l~~h~~~v~~v~~s~~~-~~vas~d~ 314 (453)
.|+|||+|-+.... ...|-.++ ++.++..++ ....|+-.+|++.++.+. ++++++|-
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL 185 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL 185 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce
Confidence 79999999886533 22111110 011111110 124678889999998665 56666677
Q ss_pred cEEEEECCCC-ceE-EEE-eeccC-----CeEEEEEEecC-CEEEEEeCCCccccCcceEEEEEcCCCe------eEEEE
Q 046773 315 RVITFDLRNQ-GMV-LGE-RGYGR-----GLYVTSVDVNA-EAYIVVENRELENQNRRLAIVRRVDTFE------EVCRF 379 (453)
Q Consensus 315 tIrlWDl~t~-~~~-~~~-~g~~~-----~~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~tg~------~v~~l 379 (453)
.|-||+++-- ++- +.. +.+.. -+....|+|.. +.++-.|+.| +||+-|+.... .+...
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKG-------tIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKG-------TIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCC-------cEEEeechhhhhhcchhhhhcc
Confidence 8999999732 221 111 11100 00012244433 3455567778 99998876321 01111
Q ss_pred EecC----------CCeeEEEEeeCCCeEEEEeCCeEEEEEC-CCCeEEEEecccC------------CceEE-----EE
Q 046773 380 SLRA----------DRNVNVMGCMNQGYALMCVEGVIRVWEV-EGGEYMYSFRERI------------GEEVI-----AF 431 (453)
Q Consensus 380 ~~~~----------~~v~~~~~~~~~~~lls~s~~tIrlWD~-~tG~~l~tL~gh~------------~~~V~-----a~ 431 (453)
+..| ..+..+-|+.+|+|+++-.--||||||+ ...+.+.+.+-|. +. |. ++
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~-IfdKFec~~ 337 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA-IFDKFECSW 337 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc-hhheeEEEE
Confidence 1111 1133356777788877544499999999 4567777777663 22 32 56
Q ss_pred ecCCCEEEEE-eCCcEEEEec
Q 046773 432 VGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 432 s~d~~~lasg-~D~~IklWDl 451 (453)
+.++.++.+| +.+.++++++
T Consensus 338 sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred cCCcceEecccccceEEEecC
Confidence 7788899999 8888888873
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00066 Score=70.35 Aligned_cols=268 Identities=13% Similarity=0.088 Sum_probs=146.8
Q ss_pred EecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEee
Q 046773 151 TLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAH 230 (453)
Q Consensus 151 afs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~ 230 (453)
..+++.|..++.++.+.-+|.+||+.+.+..-.. . ...+....+.+++.++.++.+.-.|.++ | ..+..+
T Consensus 117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~-------~~ssP~v~~~~v~v~~~~g~l~ald~~t-G-~~~W~~ 186 (394)
T PRK11138 117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-E-------ALSRPVVSDGLVLVHTSNGMLQALNESD-G-AVKWTV 186 (394)
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCCcccccCCC-c-------eecCCEEECCEEEEECCCCEEEEEEccC-C-CEeeee
Confidence 3455667778899999999999999887765321 1 1111223456677777888887777776 5 222211
Q ss_pred eccee----cCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee-eccceeEEEEcCC
Q 046773 231 FGSVM----DDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE-FTEFVGRVRVTSH 305 (453)
Q Consensus 231 ~~~v~----~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~-h~~~v~~v~~s~~ 305 (453)
..... .....-... ++. ++.++.++.+...|.++|+..--..+..+........+.. ...| .+.++
T Consensus 187 ~~~~~~~~~~~~~sP~v~-~~~----v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP----~v~~~ 257 (394)
T PRK11138 187 NLDVPSLTLRGESAPATA-FGG----AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTP----VVVGG 257 (394)
T ss_pred cCCCCcccccCCCCCEEE-CCE----EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCc----EEECC
Confidence 11000 000000111 121 4556778888889999988321000000000000000000 0112 12344
Q ss_pred ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC
Q 046773 306 ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR 385 (453)
Q Consensus 306 ~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~ 385 (453)
.+++++.++.+...|+++|+.+-.... .. ...+...++.+..++.++ .+...+..+|+.+-....-...
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~~W~~~~-~~---~~~~~~~~~~vy~~~~~g-------~l~ald~~tG~~~W~~~~~~~~ 326 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQIVWKREY-GS---VNDFAVDGGRIYLVDQND-------RVYALDTRGGVELWSQSDLLHR 326 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCEEEeecC-CC---ccCcEEECCEEEEEcCCC-------eEEEEECCCCcEEEcccccCCC
Confidence 556667788999999999876544311 10 112344577777778888 7778888888765432211111
Q ss_pred e-eEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEE--EecCCCEEEEEeCCcEEEEec
Q 046773 386 N-VNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIA--FVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 386 v-~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a--~s~d~~~lasg~D~~IklWDl 451 (453)
. .+.+ ..++++..++. +.|.+.|..+|+.+...+-.... +.+ +..+++.++...||.|...++
T Consensus 327 ~~~sp~--v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~-~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 327 LLTAPV--LYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSG-FLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred cccCCE--EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-ceeCCEEECCEEEEEeCCceEEEEeC
Confidence 1 1111 12566666665 99999999999998776533333 331 234665555459999887764
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.3e-06 Score=87.23 Aligned_cols=197 Identities=12% Similarity=0.133 Sum_probs=131.6
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE-Eecc---cc------cC---------------Ccceeeeeeeeeec
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV-FVGG---DL------TD---------------HNTVMGWRMLTEFT 294 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~-~~g~---~l------~~---------------~~~v~~w~~l~~h~ 294 (453)
.+.|+.+|+. |+-|+.-+-|-..|..|+++ +.-. ++ .. ++.-.-+|.|+.|
T Consensus 134 ~~~ytrnGrh---lllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~- 209 (545)
T KOG1272|consen 134 HLDYTRNGRH---LLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH- 209 (545)
T ss_pred eeeecCCccE---EEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc-
Confidence 3677777875 55566667788888888762 1110 00 00 0000113667666
Q ss_pred cceeEEEEcCCceEEEEc--CCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 295 EFVGRVRVTSHESAVACT--SSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 295 ~~v~~v~~s~~~~~vas~--d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
..|+.+.|-|-..++++. .+-.+-=|+.+|+.+-.+ .+.+ ...|.+-.|-+..+-++-+.| ++.+|..+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-~~~vm~qNP~NaVih~GhsnG-------tVSlWSP~ 281 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-RTDVMKQNPYNAVIHLGHSNG-------TVSLWSPN 281 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-ccchhhcCCccceEEEcCCCc-------eEEecCCC
Confidence 568888888877555443 366888899998754332 2211 233455556666667777888 99999999
Q ss_pred CCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEecCC-CEEEEEeCCcEEEE
Q 046773 372 TFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDD-RHVAASCGTNIHLW 449 (453)
Q Consensus 372 tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~-~~lasg~D~~IklW 449 (453)
..+++..+..|...|.++++.++|.|+++++. +.|||||+..-..++++.-.+. ...++... -.||.+....|.||
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~--a~~ls~SqkglLA~~~G~~v~iw 359 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP--ASNLSLSQKGLLALSYGDHVQIW 359 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCC--ccccccccccceeeecCCeeeee
Confidence 88888888888889999999999999998776 9999999999888887754221 23333322 25666655578888
Q ss_pred e
Q 046773 450 D 450 (453)
Q Consensus 450 D 450 (453)
.
T Consensus 360 ~ 360 (545)
T KOG1272|consen 360 K 360 (545)
T ss_pred h
Confidence 3
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00068 Score=78.83 Aligned_cols=241 Identities=12% Similarity=0.051 Sum_probs=130.2
Q ss_pred EEEEc---CCeEEEEeCCCCEEEEEeecCCcceEEeeecc-----------eecCceEEEEeCCCceeeEEEEeeCCCeE
Q 046773 197 GIIIT---DSQLIFATLDGDIHVAVIDDVANETRTAHFGS-----------VMDDGVLIDFTGCSRYWVGLYAGLAGRAF 262 (453)
Q Consensus 197 ~i~f~---g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~-----------v~~~~~~v~Fs~dg~~~~~LaSgS~D~tI 262 (453)
+++++ ++..++-+..+.|+++|.+. ......+-.+. ....-.-|+|++++..+ .++-...+.|
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L--YVaDt~n~~I 648 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL--YVADTENHAL 648 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE--EEEeCCCceE
Confidence 46664 34566667778888888754 21111110000 00111348899987741 2333455789
Q ss_pred EEeeCCCCc--EEecccccCCcceee--eeeeeeeccceeEEEEcC-Cc-eEEEE-cCCcEEEEECCCCceEEEEeecc-
Q 046773 263 HIWDRQAEE--VFVGGDLTDHNTVMG--WRMLTEFTEFVGRVRVTS-HE-SAVAC-TSSRVITFDLRNQGMVLGERGYG- 334 (453)
Q Consensus 263 rvWD~~tg~--~~~g~~l~~~~~v~~--w~~l~~h~~~v~~v~~s~-~~-~~vas-~d~tIrlWDl~t~~~~~~~~g~~- 334 (453)
++.|..++. ++.|....+. ...+ -...... ..-..|+|++ ++ +.++. .+.+|++||+.++... ...+.+
T Consensus 649 r~id~~~~~V~tlag~G~~g~-~~~gg~~~~~~~l-n~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~ 725 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGS-DYQGGKKGTSQVL-NSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGY 725 (1057)
T ss_pred EEEecCCCEEEEEeccCcccC-CCCCChhhhHhhc-CCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCc
Confidence 999998887 3432100000 0000 0000001 1124688887 34 44554 3478999999886432 221111
Q ss_pred --------C------CeEEEEEEecCCEE-EEEeCCCccccCcceEEEEEcCCCeeEEEE-----------Eec-C----
Q 046773 335 --------R------GLYVTSVDVNAEAY-IVVENRELENQNRRLAIVRRVDTFEEVCRF-----------SLR-A---- 383 (453)
Q Consensus 335 --------~------~~~v~~~~~~g~~l-~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-----------~~~-~---- 383 (453)
. .-.-.+++++++.+ ++-+.++ .|++||.+++...... .+. .
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~-------~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS-------SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCC-------eEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 0 00014567777744 4444455 8999998876421110 000 0
Q ss_pred -----CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEeccc--------------CCceEE--EEecCCCEEEEE
Q 046773 384 -----DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRER--------------IGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 384 -----~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh--------------~~~~V~--a~s~d~~~lasg 441 (453)
..-..+++++++...++-+. ++|++||..+++... +.|. ... .. ++++||+.+++-
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~-P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSE-PAGLALGENGRLFVAD 876 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCC-ceEEEEeCCCCEEEEE
Confidence 01235667777765555555 899999999887653 3221 011 12 678999988877
Q ss_pred -eCCcEEEEecC
Q 046773 442 -CGTNIHLWDFG 452 (453)
Q Consensus 442 -~D~~IklWDl~ 452 (453)
.+++|++||+.
T Consensus 877 t~Nn~Irvid~~ 888 (1057)
T PLN02919 877 TNNSLIRYLDLN 888 (1057)
T ss_pred CCCCEEEEEECC
Confidence 89999999974
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.3e-05 Score=76.89 Aligned_cols=110 Identities=10% Similarity=0.128 Sum_probs=73.4
Q ss_pred eeccceeEEEEcCCceEEE--E-cCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEE
Q 046773 292 EFTEFVGRVRVTSHESAVA--C-TSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIV 367 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~va--s-~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~I 367 (453)
+| .+|.+++..+++...+ | +|..|+|||+.++.++.-. .+ ..+....-++|+++.+..++-|+ +.++
T Consensus 194 gh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-lgg~slLkwSPdgd~lfaAt~da-------vfrl 264 (445)
T KOG2139|consen 194 GH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-LGGFSLLKWSPDGDVLFAATCDA-------VFRL 264 (445)
T ss_pred CC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-CCceeeEEEcCCCCEEEEecccc-------eeee
Confidence 45 6788999988876554 3 2467999999998765322 22 22344677899999999999999 9999
Q ss_pred EEcCC-CeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEEC
Q 046773 368 RRVDT-FEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEV 411 (453)
Q Consensus 368 w~~~t-g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~ 411 (453)
|..+. -.+.. ....+..+++...+|.|++++-+..+.=+|+.+
T Consensus 265 w~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 265 WQENQSWTKER-WILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred ehhcccceecc-eeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 95432 11111 122234688888999998887554433334433
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.2e-06 Score=88.72 Aligned_cols=265 Identities=15% Similarity=0.134 Sum_probs=149.8
Q ss_pred EEEEecCCEEEEEeCCCcEEEEECC-CCeEEEEecCCCCCccccccceEEEEEEc-----CCeEEEEeCCCCEEEEEeec
Q 046773 148 RCLTLSDLYLACGFADGAVRLFDLT-TRLHVRTFRPQHSDRLGQFSRAVSGIIIT-----DSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 148 ~~lafs~~~LaSGS~D~TIrlWD~~-tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-----g~~LasgS~D~tIkvWd~~~ 221 (453)
.++..+++-||.+|.-+..- =|+. .+...+-|. |...+ .|..++++ +.-+++.|.-++| +|++..
T Consensus 30 ~si~p~grdi~lAsr~gl~i-~dld~p~~ppr~l~--h~tpw-----~vad~qws~h~a~~~wiVsts~qkai-iwnlA~ 100 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQGLYI-IDLDDPFTPPRWLH--HITPW-----QVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAK 100 (1081)
T ss_pred eeeccccchhhhhhhcCeEE-EeccCCCCCceeee--ccCcc-----hhcceecccCCCCceeEEecCcchhh-hhhhhc
Confidence 34555567788888776553 3543 334444442 32211 23334443 2347776666664 888754
Q ss_pred CC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccce
Q 046773 222 VA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 222 ~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
.. .-.+.+|+-.+. -+.|.|+-.- .||++|.|..|..||+++-.... +....|+ ..-
T Consensus 101 ss~~aIef~lhghsrait----d~n~~~q~pd--Vlatcsvdt~vh~wd~rSp~~p~-------ys~~~w~------s~a 161 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAIT----DINFNPQHPD--VLATCSVDTYVHAWDMRSPHRPF-------YSTSSWR------SAA 161 (1081)
T ss_pred CCccceEEEEecCcccee----ccccCCCCCc--ceeeccccccceeeeccCCCcce-------eeeeccc------ccC
Confidence 22 123445544432 2567666543 59999999999999999876211 1122232 123
Q ss_pred eEEEEcC-CceEEEEc-CCcEEEEECCCCceEE-EEeeccCCeEEEEEEecC---CEEEEEeCCCccccCcceEEEEEcC
Q 046773 298 GRVRVTS-HESAVACT-SSRVITFDLRNQGMVL-GERGYGRGLYVTSVDVNA---EAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 298 ~~v~~s~-~~~~vas~-d~tIrlWDl~t~~~~~-~~~g~~~~~~v~~~~~~g---~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
..|+.+- +.-+.+++ ...|++||++-|...+ .+++|. ..++.++|.. ..+.+.++|+ +++.|+-+
T Consensus 162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~v--s~vn~~~fnr~~~s~~~s~~~d~-------tvkfw~y~ 232 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHV--SSVNSIDFNRFKYSEIMSSSNDG-------TVKFWDYS 232 (1081)
T ss_pred ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccc--eeeehHHHhhhhhhhhcccCCCC-------ceeeeccc
Confidence 4566652 23344544 4679999999886543 356553 3455555543 4567778888 99999876
Q ss_pred CC--eeEEEEE-ecCCCeeEEEEee----------CCCeEEEEeC--CeEEEEECCCC-eEEEEecccCCceEEEEe---
Q 046773 372 TF--EEVCRFS-LRADRNVNVMGCM----------NQGYALMCVE--GVIRVWEVEGG-EYMYSFRERIGEEVIAFV--- 432 (453)
Q Consensus 372 tg--~~v~~l~-~~~~~v~~~~~~~----------~~~~lls~s~--~tIrlWD~~tG-~~l~tL~gh~~~~V~a~s--- 432 (453)
.. +.-++++ -.|.+ ...+.| .|+.++---. +.-+.|++.++ +.+++|.||.+. |..|.
T Consensus 233 kSt~e~~~~vtt~~piw--~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~-V~eFlWR~ 309 (1081)
T KOG0309|consen 233 KSTTESKRTVTTNFPIW--RGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV-VLEFLWRK 309 (1081)
T ss_pred ccccccceeccccCcce--eccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH-HHHHhhhh
Confidence 32 2111111 11111 000111 1121111111 45578888886 789999999988 65331
Q ss_pred -------cCCC--EEEEE-eCCcEEEEecC
Q 046773 433 -------GDDR--HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 433 -------~d~~--~lasg-~D~~IklWDl~ 452 (453)
-|.+ .|++= .|.++|+|-++
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeecc
Confidence 2333 68886 99999999875
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-06 Score=87.38 Aligned_cols=89 Identities=13% Similarity=0.212 Sum_probs=65.3
Q ss_pred eEEEEEE--cCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 194 AVSGIII--TDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 194 ~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
.+..++| ||+.||+-|.|+.+||.|.++. -+.+........-..|..||||++ +++|+.|--|.||.+..++
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy---IvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY---IVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE---EEecCCcceEEEEEeccce
Confidence 4555666 4778999999999999998871 111110011111124899999998 7899999999999999988
Q ss_pred -EEecccccCCcceeeeeeeeeeccceeEEEEc
Q 046773 272 -VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 272 -~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
..+| ++|.+||+.|+|+
T Consensus 366 VVARG---------------qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 366 VVARG---------------QGHKSWVSVVAFD 383 (636)
T ss_pred EEEec---------------cccccceeeEeec
Confidence 4444 3788999999998
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.1e-06 Score=87.70 Aligned_cols=182 Identities=10% Similarity=0.164 Sum_probs=118.8
Q ss_pred EEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEE-E
Q 046773 253 LYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLG-E 330 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~-~ 330 (453)
.+|+|.|+|||+|.++..- .. .+..+--|.+.|+.+|+.+.|-.+...++|.|+.|.+||.--+..+-+ +
T Consensus 750 FiSASkDKTVKLWSik~EgD~~--------~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEI--------GTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred eeeccCCceEEEEEeccccCcc--------ccceeeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhh
Confidence 5799999999999998632 10 011111356789999999988777767888899999999876654332 1
Q ss_pred --eeccCCeEEEEEEecCCEEEEE--eCCCccccCcceEEEEEcCCCeeEEEEEec----CCC-eeEEEEeeCCCeEEEE
Q 046773 331 --RGYGRGLYVTSVDVNAEAYIVV--ENRELENQNRRLAIVRRVDTFEEVCRFSLR----ADR-NVNVMGCMNQGYALMC 401 (453)
Q Consensus 331 --~g~~~~~~v~~~~~~g~~l~s~--s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~----~~~-v~~~~~~~~~~~lls~ 401 (453)
.-|+....|.++.--...++++ +... |+|+.|...++-++++... |+. ++.++..+.|..++++
T Consensus 822 dapk~~a~~~ikcl~nv~~~iliAgcsaeS-------TVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~ 894 (1034)
T KOG4190|consen 822 DAPKEGAGGNIKCLENVDRHILIAGCSAES-------TVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAA 894 (1034)
T ss_pred cCcccCCCceeEecccCcchheeeeccchh-------hheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHH
Confidence 2233344566664323334333 4555 9999999888766666543 322 5666666677776665
Q ss_pred eC-CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEE-E
Q 046773 402 VE-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHL-W 449 (453)
Q Consensus 402 s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~Ikl-W 449 (453)
-+ |+|-+-|..+|+.+...+.-.-....-..|.++.|+++ .|.++-+ |
T Consensus 895 LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnW 945 (1034)
T KOG4190|consen 895 LSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNW 945 (1034)
T ss_pred hcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeee
Confidence 55 99999999999987654321111011124777778777 7888777 6
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.9e-06 Score=56.97 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=33.2
Q ss_pred CeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 414 GEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 414 G~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
|+|+++|++|.+. |+ +++|+++.|+|+ .|++|+|||
T Consensus 1 g~~~~~~~~h~~~-i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSS-INSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSS-EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCc-EEEEEEecccccceeeCCCCEEEEEC
Confidence 5899999999999 88 677999999999 999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00067 Score=71.35 Aligned_cols=227 Identities=9% Similarity=0.048 Sum_probs=118.2
Q ss_pred CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCe--EEEEeC-CCC--EEEEEeecCC-cceEEeeecceecC
Q 046773 164 GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQ--LIFATL-DGD--IHVAVIDDVA-NETRTAHFGSVMDD 237 (453)
Q Consensus 164 ~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~--LasgS~-D~t--IkvWd~~~~g-~~~~~~~~~~v~~~ 237 (453)
..|.+.|...+. .+.|......... ...++||+. ++.-|. ++. |.+.++++ | ...+....+.
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~s------P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~-g~~~~lt~~~g~---- 232 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSIT------PTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN-PAGKKILALQGN---- 232 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCccc------ceEccCCCceEEEEEEccCCCceEEEEECCC-CCceEeecCCCC----
Confidence 467777776654 3445432211111 124556665 333343 344 44445555 4 2222222221
Q ss_pred ceEEEEeCCCceeeEEEE--eeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee-eeccceeEEEEcCCce--EEEEc
Q 046773 238 GVLIDFTGCSRYWVGLYA--GLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT-EFTEFVGRVRVTSHES--AVACT 312 (453)
Q Consensus 238 ~~~v~Fs~dg~~~~~LaS--gS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~-~h~~~v~~v~~s~~~~--~vas~ 312 (453)
....+|||||+.++.... |..|-.+.+||+.++..-. + ..+. +.........++|++. +..+.
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~------~------~~lt~~~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGK------P------RRLLNEAFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCc------c------eEeecCCCCCcCCeEECCCCCEEEEEEC
Confidence 113689999997432221 2234456668887642000 0 0111 1112234568898874 33343
Q ss_pred -CCcEEEE--ECCC-CceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeE
Q 046773 313 -SSRVITF--DLRN-QGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVN 388 (453)
Q Consensus 313 -d~tIrlW--Dl~t-~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~ 388 (453)
++..+|| ++.. ++....+..+........++|+|+.++..+.+. ....+.+||+++++.. .++..+..+..
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~----g~~~I~v~dl~~g~~~-~Lt~~~~~~~~ 375 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK----GVRQICVYDLATGRDY-QLTTSPENKES 375 (428)
T ss_pred CCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC----CCcEEEEEECCCCCeE-EccCCCCCccc
Confidence 3555555 4432 222233322222333467899999888766543 1236888999888653 34333333566
Q ss_pred EEEeeCCCeEEEEeC----CeEEEEECCCCeEEEE
Q 046773 389 VMGCMNQGYALMCVE----GVIRVWEVEGGEYMYS 419 (453)
Q Consensus 389 ~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~t 419 (453)
..+++|+++++..+. ..|.+||+.+++....
T Consensus 376 p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 376 PSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 788899988875432 6899999998875443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00016 Score=72.74 Aligned_cols=181 Identities=10% Similarity=0.120 Sum_probs=122.1
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC-ceEEE-Ec-C--CcEEEEECCCCceE
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH-ESAVA-CT-S--SRVITFDLRNQGMV 327 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~-~~~va-s~-d--~tIrlWDl~t~~~~ 327 (453)
|.++-.++.+.+|..+.+.+.. ... .-+..+ ..+..|+-++. ..+++ ++ . ..+++||+++.+.+
T Consensus 118 Litc~~sG~l~~~~~k~~d~hs--------s~l--~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi 186 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHS--------SKL--IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI 186 (412)
T ss_pred EEEEecCCcEEEEeccCCcccc--------ccc--eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee
Confidence 5677788999999998654210 000 001111 23344444432 23454 33 2 46899999987544
Q ss_pred EEEee-cc--C--CeE--EEE--EEec--CCEEEEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCCeeEEEEeeCC
Q 046773 328 LGERG-YG--R--GLY--VTS--VDVN--AEAYIVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADRNVNVMGCMNQ 395 (453)
Q Consensus 328 ~~~~g-~~--~--~~~--v~~--~~~~--g~~l~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~v~~~~~~~~~ 395 (453)
....- .. - .++ ... |-+. ...+++++.-+ .+|++|..++ .++..|.+..+.+.++.-.|.+
T Consensus 187 w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h-------qvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 187 WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH-------QVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred eeccCCCCccccceeeeeeccceecCCCCCceEEEEecce-------eEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 33210 00 0 111 222 2222 45789999888 8999999875 5788888888888888888888
Q ss_pred CeEEEEeC-CeEEEEECCCCeEEEE-ecccCCceEEEEe--cCCCEEEEE-eCCcEEEEecC
Q 046773 396 GYALMCVE-GVIRVWEVEGGEYMYS-FRERIGEEVIAFV--GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 396 ~~lls~s~-~tIrlWD~~tG~~l~t-L~gh~~~~V~a~s--~d~~~lasg-~D~~IklWDl~ 452 (453)
.+++++.. +.+...|+.+++.+.. |.|-+|. +.++. |..+.|||+ -|.-|||.|+.
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs-irsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS-IRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCC-cceEEEcCCCceEEeeccceeEEEeecc
Confidence 88877777 9999999999998876 7888888 88654 666799998 99999999975
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00047 Score=68.51 Aligned_cols=244 Identities=13% Similarity=0.172 Sum_probs=134.7
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCe-----EEEEecCCCCCcccccc-----ceEEEEEE-c-C--CeEEEEeC
Q 046773 147 CRCLTLS--DLYLACGFADGAVRLFDLTTRL-----HVRTFRPQHSDRLGQFS-----RAVSGIII-T-D--SQLIFATL 210 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~D~TIrlWD~~tg~-----~~~tl~gh~~~~~~~~s-----~~V~~i~f-~-g--~~LasgS~ 210 (453)
+.|+.|+ |++||||-.+|.|-++.-+.-. -..+++.|..+ |.-.. ..|..|.. + + ........
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepE-FDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPE-FDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcc-cchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 7899996 6899999999999998753322 23345554321 11100 11222332 1 1 22333468
Q ss_pred CCCEEEEEeecCC----------------cceEEe---------------------eecceecCceEEEEeCCCceeeEE
Q 046773 211 DGDIHVAVIDDVA----------------NETRTA---------------------HFGSVMDDGVLIDFTGCSRYWVGL 253 (453)
Q Consensus 211 D~tIkvWd~~~~g----------------~~~~~~---------------------~~~~v~~~~~~v~Fs~dg~~~~~L 253 (453)
|+|||+|-+...+ +..++. |+-++. ++.++.|.+. +
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiN----SIS~NsD~Et---~ 179 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHIN----SISVNSDKET---F 179 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEee----eeeecCccce---E
Confidence 9999999875311 112221 111221 4788888886 3
Q ss_pred EEeeCCCeEEEeeCCC-CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEE
Q 046773 254 YAGLAGRAFHIWDRQA-EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLG 329 (453)
Q Consensus 254 aSgS~D~tIrvWD~~t-g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~ 329 (453)
.| +.|=.|.||+++- .+.|.--.+- | +.+...+.-+++..|+|.. .+-+|+.|+|||=|++....+-.
T Consensus 180 lS-ADdLRINLWnlei~d~sFnIVDIK-P------~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 180 LS-ADDLRINLWNLEIIDQSFNIVDIK-P------ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred ee-ccceeeeeccccccCCceeEEEcc-c------cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 44 5678899999884 3344210000 1 1233455667777888754 34456679999999995432211
Q ss_pred ----EeeccC------------CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCC--------
Q 046773 330 ----ERGYGR------------GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRAD-------- 384 (453)
Q Consensus 330 ----~~g~~~------------~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~-------- 384 (453)
+..... .+.-..|+.+|+.++ +.|- .+++|||++ ..+++.+.+.|..
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil--sRDy------ltvk~wD~nme~~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL--SRDY------LTVKLWDLNMEAKPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE--Eecc------ceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence 111111 111123455555544 3442 189999995 3456666666541
Q ss_pred ----Cee---EEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 385 ----RNV---NVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 385 ----~v~---~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
.+. ...++-++.++++++- +.+|+.++..|
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 121 2233335556666665 88999997765
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00021 Score=71.37 Aligned_cols=162 Identities=11% Similarity=0.039 Sum_probs=104.1
Q ss_pred EEEeeCCCeEEEeeCCCCc--EEecccccCCcceeeeeeeeeeccceeEEEEcCC---ceEEEEcCCcEEEEECCCCc--
Q 046773 253 LYAGLAGRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH---ESAVACTSSRVITFDLRNQG-- 325 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~---~~~vas~d~tIrlWDl~t~~-- 325 (453)
+|++..|-+|||+|-.+.+ .++ .+ .--.|.++++.|- .++++|. ..|.+|-.....
T Consensus 113 fava~nddvVriy~ksst~pt~Lk-----s~-----------sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCPTKLK-----SV-----------SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hhhhccCcEEEEeccCCCCCceec-----ch-----------hhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 6788899999999988744 221 00 0134778888753 3566654 468999765321
Q ss_pred -e---------EEEEeeccCCeEEEEEE--ecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee
Q 046773 326 -M---------VLGERGYGRGLYVTSVD--VNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 326 -~---------~~~~~g~~~~~~v~~~~--~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~ 393 (453)
. ...+.+.+| ++|.++. +||..++++|.+. ..|+|||.++++++-.......++.-+-++|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs------ssi~iWdpdtg~~~pL~~~glgg~slLkwSP 248 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS------SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP 248 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc------ceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence 0 001122222 6777764 6677888877554 3899999999987655545566677788999
Q ss_pred CCCeEEEEeC-CeEEEEEC-CCCeEEEEecccCCceEE--EEecCCCEEEE
Q 046773 394 NQGYALMCVE-GVIRVWEV-EGGEYMYSFRERIGEEVI--AFVGDDRHVAA 440 (453)
Q Consensus 394 ~~~~lls~s~-~tIrlWD~-~tG~~l~tL~gh~~~~V~--a~s~d~~~las 440 (453)
|+.++.++.- ++.+||+. .+-.+.+-.-| .+. |. ..+|+|++|.-
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgr-vqtacWspcGsfLLf 297 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTKERWILG-SGR-VQTACWSPCGSFLLF 297 (445)
T ss_pred CCCEEEEecccceeeeehhcccceecceecc-CCc-eeeeeecCCCCEEEE
Confidence 9999887665 99999944 34333332222 234 55 56899987643
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00033 Score=73.01 Aligned_cols=161 Identities=13% Similarity=0.138 Sum_probs=95.3
Q ss_pred cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC-EEEEEeecCCcceEEe
Q 046773 153 SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD-IHVAVIDDVANETRTA 229 (453)
Q Consensus 153 s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t-IkvWd~~~~g~~~~~~ 229 (453)
+|.-|+|.+.||-||+|.- +|-..-|+.- . -.+|.+++++ ...++++-.+.- ||---.+. .+-..+.
T Consensus 115 dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q-~-------~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~-k~i~WkA 184 (737)
T KOG1524|consen 115 DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQ-N-------EESIRCARWAPNSNSIVFCQGGHISIKPLAANS-KIIRWRA 184 (737)
T ss_pred CCceeeeecCCceEEEEec-cchHHHHHhh-c-------CceeEEEEECCCCCceEEecCCeEEEeeccccc-ceeEEec
Confidence 3467999999999999985 5654444431 1 1267777765 344555433322 22111111 0111223
Q ss_pred eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEE
Q 046773 230 HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV 309 (453)
Q Consensus 230 ~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v 309 (453)
|.|-+. .++.+|.+.. ++||+.|-..||||.....+|. ...|.-++.+|+|.|+.++.
T Consensus 185 HDGiiL----~~~W~~~s~l---I~sgGED~kfKvWD~~G~~Lf~---------------S~~~ey~ITSva~npd~~~~ 242 (737)
T KOG1524|consen 185 HDGLVL----SLSWSTQSNI---IASGGEDFRFKIWDAQGANLFT---------------SAAEEYAITSVAFNPEKDYL 242 (737)
T ss_pred cCcEEE----EeecCccccc---eeecCCceeEEeecccCccccc---------------CChhccceeeeeecccccee
Confidence 444332 3678888775 7899999999999975544553 23456789999999998777
Q ss_pred EEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCC
Q 046773 310 ACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRE 356 (453)
Q Consensus 310 as~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg 356 (453)
..+-.+.|+=-+++|. +.-.+.++||..++.+.+.|
T Consensus 243 v~S~nt~R~~~p~~GS-----------ifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 243 LWSYNTARFSSPRVGS-----------IFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eeeeeeeeecCCCccc-----------eEEEEEcCCCceeeccccCc
Confidence 6666677743333321 22244555665555555544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0051 Score=64.56 Aligned_cols=178 Identities=6% Similarity=-0.011 Sum_probs=102.0
Q ss_pred EEEEeCCCceeeEEEEee-CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc-C--
Q 046773 240 LIDFTGCSRYWVGLYAGL-AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT-S-- 313 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~-d-- 313 (453)
.-.|+|||+....+.+-. .+..|.++|+.+|+... +....+.+....++|++. +...+ +
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~---------------lt~~~g~~~~~~~SPDG~~la~~~~~~g~ 256 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK---------------IASSQGMLVVSDVSKDGSKLLLTMAPKGQ 256 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE---------------EecCCCcEEeeEECCCCCEEEEEEccCCC
Confidence 368999998632222322 24678899999988211 111223344456888763 33222 2
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~ 393 (453)
..|-+.|+.++.. .++..+........++|+|+.++-.|... ....|-+.++++++.. .++..+.. ...++|
T Consensus 257 ~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~-rlt~~g~~--~~~~SP 328 (419)
T PRK04043 257 PDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVE-QVVFHGKN--NSSVST 328 (419)
T ss_pred cEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCC----CCceEEEEECCCCCeE-eCccCCCc--CceECC
Confidence 4588889988753 33321111122356999999887776543 1125666677776542 33333222 247889
Q ss_pred CCCeEEEEeC----------CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE
Q 046773 394 NQGYALMCVE----------GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS 441 (453)
Q Consensus 394 ~~~~lls~s~----------~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg 441 (453)
++++++..+. ..|.+-|+++|+. +.|.......--+|+|||+.|+-.
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFI 385 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEE
Confidence 9998876542 2577779988864 444332111012789999987643
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00042 Score=68.26 Aligned_cols=193 Identities=11% Similarity=0.142 Sum_probs=128.9
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe---EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL---HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~---~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~ 219 (453)
|+|-+|+. ..+|.+-..+.|.|+.....+ ..+||.-|.. .|.+|... ..+|+++|.|+-..||..
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~--------~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK--------IVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc--------ceeEEeecCCCCceeEccCCCCcccccc
Confidence 78999986 479999889999999987775 5778876654 57777765 568999999999999987
Q ss_pred ecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee----eeeeee
Q 046773 220 DDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW----RMLTEF 293 (453)
Q Consensus 220 ~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w----~~l~~h 293 (453)
...| ..++-.. .++.....|..+|.+.. +|.||..+.|.||=++... .| |+=+-+
T Consensus 85 ~~~~~WkptlvLl--RiNrAAt~V~WsP~enk---FAVgSgar~isVcy~E~EN--------------dWWVsKhikkPi 145 (361)
T KOG1523|consen 85 PSGGTWKPTLVLL--RINRAATCVKWSPKENK---FAVGSGARLISVCYYEQEN--------------DWWVSKHIKKPI 145 (361)
T ss_pred CCCCeeccceeEE--EeccceeeEeecCcCce---EEeccCccEEEEEEEeccc--------------ceehhhhhCCcc
Confidence 3313 2222111 11111224889999875 7899999999999887654 12 111233
Q ss_pred ccceeEEEEcCCceEEE--EcCCcEEEEE-----CCCC------------ceEEEE-eeccCCeEEEEEEecCCEEEEEe
Q 046773 294 TEFVGRVRVTSHESAVA--CTSSRVITFD-----LRNQ------------GMVLGE-RGYGRGLYVTSVDVNAEAYIVVE 353 (453)
Q Consensus 294 ~~~v~~v~~s~~~~~va--s~d~tIrlWD-----l~t~------------~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s 353 (453)
.+.|.++..+|+..+++ |.|+.+|++. ++.. +++..+ ..++..+.-..|+++|+.|+=++
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence 46688888888775444 6677788763 2211 122222 12333333456788899998888
Q ss_pred CCCccccCcceEEEEEcCCC
Q 046773 354 NRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 354 ~dg~~~~~~~~i~Iw~~~tg 373 (453)
-|. ++.+=|...+
T Consensus 226 Hds-------~v~~~da~~p 238 (361)
T KOG1523|consen 226 HDS-------TVSFVDAAGP 238 (361)
T ss_pred CCC-------ceEEeecCCC
Confidence 888 7777776554
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0064 Score=62.99 Aligned_cols=240 Identities=11% Similarity=0.095 Sum_probs=131.3
Q ss_pred EecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCC-ccccc-c-ceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceE
Q 046773 151 TLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSD-RLGQF-S-RAVSGIIITDSQLIFATLDGDIHVAVIDDVANETR 227 (453)
Q Consensus 151 afs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~-~~~~~-s-~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~ 227 (453)
.+.++.|..++.++.+.-.|++||+.+....-.... .++.. . ....++..++.+++.++.++.+.-.|.++ | ..+
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~t-G-~~~ 143 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAED-G-EVA 143 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCC-C-CCc
Confidence 345677778888899999999999988776421110 00000 0 00122456677888888899998888877 5 111
Q ss_pred Eee--ecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC
Q 046773 228 TAH--FGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH 305 (453)
Q Consensus 228 ~~~--~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~ 305 (453)
... .+.+.... .+ . +++ |+.++.|+.|.-.|.+||+.+--.....+. ..+.+...++ +..+
T Consensus 144 W~~~~~~~~~ssP-~v--~-~~~----v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----~~~~~~~sP~----v~~~ 206 (394)
T PRK11138 144 WQTKVAGEALSRP-VV--S-DGL----VLVHTSNGMLQALNESDGAVKWTVNLDVPS-----LTLRGESAPA----TAFG 206 (394)
T ss_pred ccccCCCceecCC-EE--E-CCE----EEEECCCCEEEEEEccCCCEeeeecCCCCc-----ccccCCCCCE----EECC
Confidence 111 11111100 11 1 222 455677889999999999954211110000 0011111221 2234
Q ss_pred ceEEEEcCCcEEEEECCCCceEEEEe-eccCC-eE-------EEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeE
Q 046773 306 ESAVACTSSRVITFDLRNQGMVLGER-GYGRG-LY-------VTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 306 ~~~vas~d~tIrlWDl~t~~~~~~~~-g~~~~-~~-------v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
..++++.++.+...|+++|+.+-... ..... .. ..+-...++.+..++.++ .+.-.|..+|+.+
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g-------~l~ald~~tG~~~ 279 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG-------NLVALDLRSGQIV 279 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC-------eEEEEECCCCCEE
Confidence 56666777888888999886543321 10000 00 011112356666677777 7777788888766
Q ss_pred EEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 377 CRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 377 ~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
-...... ...+ ...++.+..++. +.|...|.++|+.+-..
T Consensus 280 W~~~~~~--~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 280 WKREYGS--VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred EeecCCC--ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 5543221 1111 124556666655 89999999999876543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.5e-05 Score=74.48 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=66.4
Q ss_pred CCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 210 LDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 210 ~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
.+..+.+|.+.. + ..+.-+|..-+. .|+++||+++ +.++..|.-|||=.... ++..++
T Consensus 130 D~~~~di~s~~~-~~~~~~lGhvSml~----dVavS~D~~~---IitaDRDEkIRvs~ypa--~f~Ies----------- 188 (390)
T KOG3914|consen 130 DVYSFDILSADS-GRCEPILGHVSMLL----DVAVSPDDQF---IITADRDEKIRVSRYPA--TFVIES----------- 188 (390)
T ss_pred Cceeeeeecccc-cCcchhhhhhhhhh----eeeecCCCCE---EEEecCCceEEEEecCc--ccchhh-----------
Confidence 334455666553 2 233334533222 3899999997 67888999998855432 111110
Q ss_pred eeeeeccceeEEEEcCCc-eEEEEcCCcEEEEECCCCceEEEE
Q 046773 289 MLTEFTEFVGRVRVTSHE-SAVACTSSRVITFDLRNQGMVLGE 330 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~~~ 330 (453)
-.-||+.+|..+++-++- ++++|+|+++|+||+++|+++.+.
T Consensus 189 fclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 189 FCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred hccccHhheeeeeeccCceeeecCCCCcEEEEecccCCccccc
Confidence 123899999999987654 577788999999999999988664
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.7e-05 Score=79.65 Aligned_cols=239 Identities=11% Similarity=0.090 Sum_probs=135.1
Q ss_pred eEEEEEEecC-----CEEEEEeCCCcEEEEECCCCe---EEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCC
Q 046773 145 LTCRCLTLSD-----LYLACGFADGAVRLFDLTTRL---HVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGD 213 (453)
Q Consensus 145 v~v~~lafs~-----~~LaSGS~D~TIrlWD~~tg~---~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~t 213 (453)
-.|-.+|+|+ -.+|+-|.-++| ||++.-.. --..|-||. ++|..+-|. ++.|+++|.|..
T Consensus 68 w~vad~qws~h~a~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghs--------raitd~n~~~q~pdVlatcsvdt~ 138 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHS--------RAITDINFNPQHPDVLATCSVDTY 138 (1081)
T ss_pred chhcceecccCCCCceeEEecCcchhh-hhhhhcCCccceEEEEecCc--------cceeccccCCCCCcceeecccccc
Confidence 3355677775 257777777776 79875332 223444543 467777776 468999999999
Q ss_pred EEEEEeecCCcceEEe---eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeee
Q 046773 214 IHVAVIDDVANETRTA---HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 214 IkvWd~~~~g~~~~~~---~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l 290 (453)
++.||+.++-...+.. |.+ ...|..+-..- +.||+ |..+-|+|||.+-|... ++++
T Consensus 139 vh~wd~rSp~~p~ys~~~w~s~-----asqVkwnyk~p--~vlas-shg~~i~vwd~r~gs~p-------------l~s~ 197 (1081)
T KOG0309|consen 139 VHAWDMRSPHRPFYSTSSWRSA-----ASQVKWNYKDP--NVLAS-SHGNDIFVWDLRKGSTP-------------LCSL 197 (1081)
T ss_pred ceeeeccCCCcceeeeeccccc-----CceeeecccCc--chhhh-ccCCceEEEeccCCCcc-------------eEEe
Confidence 9999998743111111 111 11233322211 12454 77889999999887632 2557
Q ss_pred eeeccceeEEEEc---CCceEEEEcCCcEEEEECCCCceE-EEEeeccCCeEEEEEEecCCEEEEEeCCCccc--cC--c
Q 046773 291 TEFTEFVGRVRVT---SHESAVACTSSRVITFDLRNQGMV-LGERGYGRGLYVTSVDVNAEAYIVVENRELEN--QN--R 362 (453)
Q Consensus 291 ~~h~~~v~~v~~s---~~~~~vas~d~tIrlWDl~t~~~~-~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~--~~--~ 362 (453)
.+|...|+.+.|. -..++..+.|+|||.||-+..... .......-.+.-..+-|-|+++.+.-..|... ++ +
T Consensus 198 K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 198 KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCE 277 (1081)
T ss_pred cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeecccc
Confidence 7888888888775 234566677899999998743211 11100000122234566666665544433110 00 0
Q ss_pred ceEEEEEcCC-CeeEEEEEecCCCeeEEEE--------eeCCC--eEEEEeC-CeEEEEECCC
Q 046773 363 RLAIVRRVDT-FEEVCRFSLRADRNVNVMG--------CMNQG--YALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 363 ~~i~Iw~~~t-g~~v~~l~~~~~~v~~~~~--------~~~~~--~lls~s~-~tIrlWD~~t 413 (453)
+.-+.|+.-+ .+++++|.+|.+.|....+ .-+.+ +|++=+- .++|||-+.+
T Consensus 278 n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 278 NSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred chhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 0122343333 3679999999876543221 11111 3444444 9999998764
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.1e-05 Score=87.34 Aligned_cols=181 Identities=11% Similarity=0.127 Sum_probs=119.3
Q ss_pred CeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCc
Q 046773 203 SQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHN 282 (453)
Q Consensus 203 ~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~ 282 (453)
..-+|||.|+.|++|.+.. +.+.....+..- .......|+.+|.- ...+-.|+-+.+|-+. .+.+.+
T Consensus 2221 ~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~g~-s~vtr~~f~~qGnk---~~i~d~dg~l~l~q~~-pk~~~s------- 2287 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGH-GQQVVCFRTAGN-SRVTRSRFNHQGNK---FGIVDGDGDLSLWQAS-PKPYTS------- 2287 (2439)
T ss_pred ceEEecCCCceEEEEeccC-CCeEEEeeccCc-chhhhhhhcccCCc---eeeeccCCceeecccC-Ccceec-------
Confidence 3678999999999999977 423322222211 00112578888764 2345679999999886 332221
Q ss_pred ceeeeeeeeeeccceeEEEEcCCceEEE--EcC-CcEEEEECCCC---ceEEEEeeccCCeEEEEEEecCCEEEEEeCCC
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHESAVA--CTS-SRVITFDLRNQ---GMVLGERGYGRGLYVTSVDVNAEAYIVVENRE 356 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d-~tIrlWDl~t~---~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg 356 (453)
| ++|.-....++|-+..++.+ |.| +.+.+||.--. .+++ +-|-++..+.++.|....+++++.+|
T Consensus 2288 ----~---qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2288 ----W---QCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred ----c---ccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence 2 24443444456655445554 233 67999996422 2334 55777777888888888999999999
Q ss_pred ccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc
Q 046773 357 LENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE 422 (453)
Q Consensus 357 ~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g 422 (453)
.++|||+...+.+++++.- . -..+++++++ |.||||++..-..+++++.
T Consensus 2359 -------~v~l~D~rqrql~h~~~~~---------~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2359 -------EVCLFDIRQRQLRHTFQAL---------D-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred -------cEEEeehHHHHHHHHhhhh---------h-hhheeeccCcccceEEEEccccchhhcCch
Confidence 9999999876655554320 1 1345667777 9999999999899999864
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.8e-05 Score=80.73 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=71.0
Q ss_pred EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEE
Q 046773 340 TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMY 418 (453)
Q Consensus 340 ~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~ 418 (453)
.+|++||..||++|.|| .+||.+.++-+.+..+.-=-.+...+.++||++|+++++. --|.||.++.++.+.
T Consensus 296 f~FS~DG~~LA~VSqDG-------fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQDG-------FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred eeEcCCCceEEEEecCc-------eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence 46788899999999999 9999999986544443221244678889999999999887 899999999999998
Q ss_pred EecccCCceEEEEecC
Q 046773 419 SFRERIGEEVIAFVGD 434 (453)
Q Consensus 419 tL~gh~~~~V~a~s~d 434 (453)
.=.||..+ |..+.+|
T Consensus 369 RGqGHkSW-Vs~VaFD 383 (636)
T KOG2394|consen 369 RGQGHKSW-VSVVAFD 383 (636)
T ss_pred eccccccc-eeeEeec
Confidence 88899988 8865555
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00089 Score=70.37 Aligned_cols=177 Identities=14% Similarity=0.142 Sum_probs=107.0
Q ss_pred EEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---EEeccccc
Q 046773 205 LIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---VFVGGDLT 279 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---~~~g~~l~ 279 (453)
|..++....|.=.|++. | ++++..-.+.+. .|..++.-. .|+.|..|++|..||.++.. ++.-.
T Consensus 148 ly~~gsg~evYRlNLEq-GrfL~P~~~~~~~lN----~v~in~~hg---Lla~Gt~~g~VEfwDpR~ksrv~~l~~~--- 216 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQ-GRFLNPFETDSGELN----VVSINEEHG---LLACGTEDGVVEFWDPRDKSRVGTLDAA--- 216 (703)
T ss_pred EEEeecCcceEEEEccc-cccccccccccccce----eeeecCccc---eEEecccCceEEEecchhhhhheeeecc---
Confidence 44444444555557776 5 566665444332 355555544 37889999999999999876 22110
Q ss_pred CCcceeeeeeeeeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC--EEEEEeCC
Q 046773 280 DHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE--AYIVVENR 355 (453)
Q Consensus 280 ~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~--~l~s~s~d 355 (453)
..|.. +.-..-.-.|.++.|+.+++-+| .+.+.|-|+||++.+-++. ..|.....+..+++... .-.++|.|
T Consensus 217 --~~v~s-~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~D 292 (703)
T KOG2321|consen 217 --SSVNS-HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSMD 292 (703)
T ss_pred --cccCC-CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEecc
Confidence 00000 00001123488999998776444 5678999999998754433 45666677777765322 22334555
Q ss_pred CccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC
Q 046773 356 ELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 356 g~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~ 403 (453)
. +.+|||+-.+|+....+.... .+..+.+.|+++.++++-+
T Consensus 293 k------~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 293 K------RILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred h------HHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecC
Confidence 5 389999999998765553222 2555666677787777655
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.6e-05 Score=79.77 Aligned_cols=225 Identities=10% Similarity=0.057 Sum_probs=133.5
Q ss_pred EEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE-cCCeEEEEeCCCCEEEEEeecCCc
Q 046773 148 RCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII-TDSQLIFATLDGDIHVAVIDDVAN 224 (453)
Q Consensus 148 ~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f-~g~~LasgS~D~tIkvWd~~~~g~ 224 (453)
+.+.|+ |..|+-|+.-|-|-..|..|++....+.-- ..|+.+.| .....+....-+-+.|+|-....+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------ETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTEL 203 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehh---------hhhhhhhhhcchHHHHhhhhceEEEecCCCcEE
Confidence 566664 678999999999999999999987666421 13444543 233222223334456666443225
Q ss_pred ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 225 ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 225 ~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
|+++.|..- ..+.|-|- ++ .|+++|.-+-++-=|+.+|++..-. +.-.+.+..++-+|
T Consensus 204 HClk~~~~v-----~rLeFLPy-Hf--LL~~~~~~G~L~Y~DVS~GklVa~~--------------~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 204 HCLKRHIRV-----ARLEFLPY-HF--LLVAASEAGFLKYQDVSTGKLVASI--------------RTGAGRTDVMKQNP 261 (545)
T ss_pred eehhhcCch-----hhhcccch-hh--eeeecccCCceEEEeechhhhhHHH--------------HccCCccchhhcCC
Confidence 666554321 12566665 32 4889999999999999999832100 00001111222233
Q ss_pred Cce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec
Q 046773 305 HES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR 382 (453)
Q Consensus 305 ~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~ 382 (453)
-.- -++-+.++|-||.+.+..-+....-|...+...++++.|...++.+.|. .++|||+.....+.+...
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr-------~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR-------KVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc-------ceeEeeeccccccceeec-
Confidence 332 2334568999999988653322222433444566778888889988888 999999998765555433
Q ss_pred CCCeeEEEEeeCCCeEEEEeC-CeEEEE-ECCC
Q 046773 383 ADRNVNVMGCMNQGYALMCVE-GVIRVW-EVEG 413 (453)
Q Consensus 383 ~~~v~~~~~~~~~~~lls~s~-~tIrlW-D~~t 413 (453)
|.....+.++ .+-+++++- ..|.|| |.-.
T Consensus 334 p~~a~~ls~S--qkglLA~~~G~~v~iw~d~~~ 364 (545)
T KOG1272|consen 334 PHPASNLSLS--QKGLLALSYGDHVQIWKDALK 364 (545)
T ss_pred CCCccccccc--cccceeeecCCeeeeehhhhc
Confidence 3323344433 333444444 789999 4433
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0024 Score=67.02 Aligned_cols=64 Identities=16% Similarity=0.337 Sum_probs=50.0
Q ss_pred EEEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE--e-----CCcEEEEecC
Q 046773 388 NVMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS--C-----GTNIHLWDFG 452 (453)
Q Consensus 388 ~~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg--~-----D~~IklWDl~ 452 (453)
.+.|+|.+.+++.++- |.|.+||+.+-++|..+..-... +..++|||.++.++ . |+.||||+..
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt-~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTT-VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCce-EEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 4556667777766542 89999999999999888655444 66899999998876 3 9999999863
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.82 E-value=5e-05 Score=51.41 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=31.8
Q ss_pred CeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEE
Q 046773 174 RLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAV 218 (453)
Q Consensus 174 g~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd 218 (453)
|+|+++|.+|.. .|.+++|+ +..|++||.|++|+|||
T Consensus 1 g~~~~~~~~h~~--------~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS--------SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS--------SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC--------cEEEEEEecccccceeeCCCCEEEEEC
Confidence 578999998765 68888875 57899999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0025 Score=63.22 Aligned_cols=110 Identities=14% Similarity=0.028 Sum_probs=68.8
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CC-eEEEEeCCCCEEEEEeecCC
Q 046773 147 CRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DS-QLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 147 v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~-~LasgS~D~tIkvWd~~~~g 223 (453)
..|+..++++|||.+.- .+-|=|.+|-+..+.|.- .+.|.-|... .- +|--.+.|..|.||++..+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c---------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC---------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE 82 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH---------HHHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence 35666677999999966 666778877764333221 0122223332 22 35556788899999987633
Q ss_pred cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 224 NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 224 ~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
...-. -.+. ..-..+..|||||- .|-+.+.|-.|.||.+.|..
T Consensus 83 w~ckI-deg~--agls~~~WSPdgrh--iL~tseF~lriTVWSL~t~~ 125 (447)
T KOG4497|consen 83 WYCKI-DEGQ--AGLSSISWSPDGRH--ILLTSEFDLRITVWSLNTQK 125 (447)
T ss_pred eEEEe-ccCC--CcceeeeECCCcce--EeeeecceeEEEEEEeccce
Confidence 11110 0110 11124789999986 36788999999999999987
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00019 Score=72.31 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=65.3
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-ecCCCeeEEEEe
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-LRADRNVNVMGC 392 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-~~~~~v~~~~~~ 392 (453)
..+.+|....+.+ ..+.||..-..-.++++|+..++++..|. .|||-..+..--+..|- +|.+=|.++..-
T Consensus 132 ~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDE-------kIRvs~ypa~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 132 YSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDE-------KIRVSRYPATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred eeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCc-------eEEEEecCcccchhhhccccHhheeeeeec
Confidence 5688888876433 34467876666678899999999988888 66665444332233332 244334443322
Q ss_pred eCCCeEEEEeC-CeEEEEECCCCeEEEEec
Q 046773 393 MNQGYALMCVE-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 393 ~~~~~lls~s~-~tIrlWD~~tG~~l~tL~ 421 (453)
+...|+++++ +|||+||.++|++|+++.
T Consensus 204 -~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 -DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred -cCceeeecCCCCcEEEEecccCCcccccc
Confidence 3344566666 999999999999998863
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0014 Score=65.14 Aligned_cols=195 Identities=12% Similarity=0.070 Sum_probs=105.2
Q ss_pred CEEEEEeCCCcEEEEE-CCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC-----Ccce
Q 046773 155 LYLACGFADGAVRLFD-LTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV-----ANET 226 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD-~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~-----g~~~ 226 (453)
+-+.+.|.|.|+|||- .+.|+--+.+. |... ..++++++. -++|+-|=.-+++--..+... -.+.
T Consensus 37 ~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP------~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~ 109 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMP------SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKD 109 (404)
T ss_pred CCeEEccccceeeeEEeccccccCchhh-hhCC------CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhh
Confidence 5789999999999995 56666554443 2211 245555554 334554444445433322110 0122
Q ss_pred EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccc----------------c-----------
Q 046773 227 RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDL----------------T----------- 279 (453)
Q Consensus 227 ~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l----------------~----------- 279 (453)
+..|...+. .+-|+-.-.| ++|.+.|+.+.=-=.+.|..+-+..+ .
T Consensus 110 ~~~h~~~v~----~~if~~~~e~---V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 110 YLAHQARVS----AIVFSLTHEW---VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKL 182 (404)
T ss_pred hhhhhccee----eEEecCCcee---EEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEE
Confidence 223433332 2445544444 45666666553222333331110000 0
Q ss_pred CCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEE-EeeccCCeEEEEEE--ecCCEEEEEeC
Q 046773 280 DHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLG-ERGYGRGLYVTSVD--VNAEAYIVVEN 354 (453)
Q Consensus 280 ~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~--~~g~~l~s~s~ 354 (453)
.++.....-++.+|++.+.++..++.. ++++..|..|-+||+--++-+.. +.+|.+ .|.++. .--..+++++.
T Consensus 183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~--kV~~l~~~~~t~~l~S~~e 260 (404)
T KOG1409|consen 183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND--KVQALSYAQHTRQLISCGE 260 (404)
T ss_pred eecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh--hhhhhhhhhhheeeeeccC
Confidence 012222234678999999999888654 45556678899999975432222 244443 334433 33356788888
Q ss_pred CCccccCcceEEEEEcCC
Q 046773 355 RELENQNRRLAIVRRVDT 372 (453)
Q Consensus 355 dg~~~~~~~~i~Iw~~~t 372 (453)
|+ -|-+|+++.
T Consensus 261 dg-------~i~~w~mn~ 271 (404)
T KOG1409|consen 261 DG-------GIVVWNMNV 271 (404)
T ss_pred CC-------eEEEEeccc
Confidence 88 999999874
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.5e-05 Score=85.83 Aligned_cols=169 Identities=8% Similarity=0.084 Sum_probs=114.1
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE 330 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~ 330 (453)
..|||.|+.||+|.--.++... .|+++-. +.|.+.+|+..+ .-++..|+.+-+|-+... +. .
T Consensus 2223 Yltgs~dgsv~~~~w~~~~~v~-----------~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk--~~-~ 2286 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVV-----------CFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK--PY-T 2286 (2439)
T ss_pred EEecCCCceEEEEeccCCCeEE-----------EeeccCc--chhhhhhhcccCCceeeeccCCceeecccCCc--ce-e
Confidence 4589999999999987777321 2333322 567778887443 445556889999998732 11 1
Q ss_pred eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC---eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeE
Q 046773 331 RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF---EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVI 406 (453)
Q Consensus 331 ~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg---~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tI 406 (453)
.++-|......|.|-+..++++..+. ..+.+.+||.... .++. +.|+.++..+++.|.-..+++++- |.|
T Consensus 2287 s~qchnk~~~Df~Fi~s~~~tag~s~----d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIGSLLATAGRSS----DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred ccccCCccccceeeeehhhhccccCC----CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcE
Confidence 23333444456767676666654332 1237889986532 3444 778888888888887777777776 999
Q ss_pred EEEECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 407 RVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 407 rlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+|||+...+.+++++. +. ...++++| ..|.||||++.
T Consensus 2361 ~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred EEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEcc
Confidence 9999998888777643 12 23467888 99999999975
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.077 Score=54.05 Aligned_cols=190 Identities=16% Similarity=0.155 Sum_probs=110.8
Q ss_pred EEEEeCCCceeeEEEEeeC----CCeEEEeeCCC--CcE-EecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEE
Q 046773 240 LIDFTGCSRYWVGLYAGLA----GRAFHIWDRQA--EEV-FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVA 310 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~----D~tIrvWD~~t--g~~-~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~va 310 (453)
-|+++|++++ |++... ++.|-.+++.. |++ +.. ........-..+++++++ ++++
T Consensus 41 ~l~~~~~~~~---LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~-------------~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 41 WLAVSPDGRR---LYVVNEGSGDSGGVSSYRIDPDTGTLTLLN-------------SVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp CEEE-TTSSE---EEEEETTSSTTTEEEEEEEETTTTEEEEEE-------------EEEESSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCE---EEEEEccccCCCCEEEEEECCCcceeEEee-------------eeccCCCCcEEEEEecCCCEEEEE
Confidence 3899999987 666554 56888888776 442 111 111011223468888766 4555
Q ss_pred Ec-CCcEEEEECCCCceEEEE---e---ecc--------CCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe-
Q 046773 311 CT-SSRVITFDLRNQGMVLGE---R---GYG--------RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE- 374 (453)
Q Consensus 311 s~-d~tIrlWDl~t~~~~~~~---~---g~~--------~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~- 374 (453)
.. +++|-++++...+.+... . +++ ...-...++|+++.+++..... | .|.+++++...
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~-----D-~v~~~~~~~~~~ 178 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA-----D-RVYVYDIDDDTG 178 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT-----T-EEEEEEE-TTS-
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC-----C-EEEEEEEeCCCc
Confidence 53 589999999874333221 1 100 0111346788888877665433 1 67888887643
Q ss_pred -e--EEEEEec-CCCeeEEEEeeCCCeEEEEeC--CeEEEEECC--CCeE--EEE---ecc-cCC--ceE-EEEecCCCE
Q 046773 375 -E--VCRFSLR-ADRNVNVMGCMNQGYALMCVE--GVIRVWEVE--GGEY--MYS---FRE-RIG--EEV-IAFVGDDRH 437 (453)
Q Consensus 375 -~--v~~l~~~-~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~--tG~~--l~t---L~g-h~~--~~V-~a~s~d~~~ 437 (453)
. ...+... ..+-|.++|+++++++..... ++|.++++. +|+. +.+ +.. ..+ ..- .+++||+++
T Consensus 179 ~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 179 KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF 258 (345)
T ss_dssp TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred eEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence 2 2233333 355788999999998876665 999999988 5533 332 221 111 101 168899998
Q ss_pred EEEE--eCCcEEEEec
Q 046773 438 VAAS--CGTNIHLWDF 451 (453)
Q Consensus 438 lasg--~D~~IklWDl 451 (453)
|..+ .+++|-++++
T Consensus 259 lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEECTTTEEEEEEE
T ss_pred EEEEeccCCEEEEEEE
Confidence 8544 7789999987
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.03 Score=55.91 Aligned_cols=108 Identities=9% Similarity=0.085 Sum_probs=56.9
Q ss_pred CcEEEEECCCCceEEEEee--ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC-------C
Q 046773 314 SRVITFDLRNQGMVLGERG--YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-------D 384 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g--~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-------~ 384 (453)
..+-+-|..+|+.+-+... .-++..+.-++.+++..+.....-+.+..+.---|-...-++.+..+...+ +
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~ 217 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNG 217 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCC
Confidence 3444556777765443211 224455666666655544433222111111111222222333333333221 2
Q ss_pred CeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEec
Q 046773 385 RNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~ 421 (453)
-+-+++++.+++.+++++- +.+-+||.++|+++....
T Consensus 218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 2557788888877766664 899999999999987664
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0012 Score=65.37 Aligned_cols=181 Identities=12% Similarity=0.154 Sum_probs=100.8
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce---EEEEcCCcEE
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES---AVACTSSRVI 317 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~---~vas~d~tIr 317 (453)
-.|||+|++ +||.+.- -+-|-|.+|=+.+. |--.-+.|..+-..-+.. .++.-+..|.
T Consensus 14 c~fSp~g~y---iAs~~~y-rlviRd~~tlq~~q---------------lf~cldki~yieW~ads~~ilC~~yk~~~vq 74 (447)
T KOG4497|consen 14 CSFSPCGNY---IASLSRY-RLVIRDSETLQLHQ---------------LFLCLDKIVYIEWKADSCHILCVAYKDPKVQ 74 (447)
T ss_pred eeECCCCCe---eeeeeee-EEEEeccchhhHHH---------------HHHHHHHhhheeeeccceeeeeeeeccceEE
Confidence 479999998 6777653 56677777755210 000012222222222332 2334567999
Q ss_pred EEECCCCceEEE-EeeccCCeEEEEEEecCCEEEE-EeCCCccccCcceEEEEEcCCCeeEEEEEecC-CCeeEEEEeeC
Q 046773 318 TFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEAYIV-VENRELENQNRRLAIVRRVDTFEEVCRFSLRA-DRNVNVMGCMN 394 (453)
Q Consensus 318 lWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~l~s-~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-~~v~~~~~~~~ 394 (453)
+|++...+---. ..|+. +....+.+|+|+.+.. .+-+- -|+||.+.|-.+... -++ ..+..++|+++
T Consensus 75 vwsl~Qpew~ckIdeg~a-gls~~~WSPdgrhiL~tseF~l-------riTVWSL~t~~~~~~--~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 75 VWSLVQPEWYCKIDEGQA-GLSSISWSPDGRHILLTSEFDL-------RITVWSLNTQKGYLL--PHPKTNVKGYAFHPD 144 (447)
T ss_pred EEEeecceeEEEeccCCC-cceeeeECCCcceEeeeeccee-------EEEEEEeccceeEEe--cccccCceeEEECCC
Confidence 999997642211 23432 3344668899966554 44455 889999988654322 122 33566777777
Q ss_pred CCeEEEEe------------------------------------C-CeEEEEECCCCeEEEEecccCCceEEEEecCCCE
Q 046773 395 QGYALMCV------------------------------------E-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRH 437 (453)
Q Consensus 395 ~~~lls~s------------------------------------~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~ 437 (453)
+++.+.++ + +-+-+||.--.--++..+--.|-...+.+|-++.
T Consensus 145 g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQF 224 (447)
T ss_pred CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccce
Confidence 76654432 1 3455665432222222211112111267899999
Q ss_pred EEEE-eCCcEEEEe
Q 046773 438 VAAS-CGTNIHLWD 450 (453)
Q Consensus 438 lasg-~D~~IklWD 450 (453)
|+.| +|+++||-+
T Consensus 225 lavGsyD~~lrvln 238 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLN 238 (447)
T ss_pred EEeeccchhhhhhc
Confidence 9999 999998753
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.054 Score=56.67 Aligned_cols=278 Identities=14% Similarity=0.156 Sum_probs=142.7
Q ss_pred EEEEEecC--CEEEEEeCCC---------------cEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEe
Q 046773 147 CRCLTLSD--LYLACGFADG---------------AVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFAT 209 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~---------------TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS 209 (453)
|+-+.||| +||+|=++-. .+.+||+.+|..+.++.+-...-.+ + .+.-...++..+|--
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~-W--p~~k~s~~D~y~ARv- 149 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLG-W--PVLKFSIDDKYVARV- 149 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccc-c--ceeeeeecchhhhhh-
Confidence 67788886 6898865543 4899999999999999864432000 0 122223344433322
Q ss_pred CCCCEEEEEeecCC-----cceEEeeecceecCceEEEEeCCCceeeEEE-----EeeCCCeEEEeeCCCCcEEeccccc
Q 046773 210 LDGDIHVAVIDDVA-----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLY-----AGLAGRAFHIWDRQAEEVFVGGDLT 279 (453)
Q Consensus 210 ~D~tIkvWd~~~~g-----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~La-----SgS~D~tIrvWD~~tg~~~~g~~l~ 279 (453)
....++|.++ +.. .+.++. .++. -..++|-|.-- .|| ....+.+++||.+-.+..+..+++-
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~--~gi~----dFsisP~~n~~-~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf 221 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRP--VGIL----DFSISPEGNHD-ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF 221 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccc--ccee----eEEecCCCCCc-eEEEEccccCCCCcEEEEEEccCCCeeeeeeeE
Confidence 2334667665 211 122220 1110 13344442210 122 2456788899988766644322211
Q ss_pred CCcceee-eeeeeeeccceeEEEE----cCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeC
Q 046773 280 DHNTVMG-WRMLTEFTEFVGRVRV----TSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVEN 354 (453)
Q Consensus 280 ~~~~v~~-w~~l~~h~~~v~~v~~----s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~ 354 (453)
....+.. |+.+- .....+.. +....+ +..++.|.+++...+. .+.+-...+.-.++.|.+++.++.++
T Consensus 222 k~~~~qLkW~~~g---~~ll~l~~t~~ksnKsyf---gesnLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g 294 (561)
T COG5354 222 KVSGVQLKWQVLG---KYLLVLVMTHTKSNKSYF---GESNLYLLRITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISG 294 (561)
T ss_pred eecccEEEEecCC---ceEEEEEEEeeeccccee---ccceEEEEeecccccc-eeccccccceeeeecccCCceeEEec
Confidence 1111110 11100 00000000 000000 1135677777644332 22111111122455667777776663
Q ss_pred CCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEe-C---CeEEEEECCCC-eEEEEecccCCceEE
Q 046773 355 RELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCV-E---GVIRVWEVEGG-EYMYSFRERIGEEVI 429 (453)
Q Consensus 355 dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s-~---~tIrlWD~~tG-~~l~tL~gh~~~~V~ 429 (453)
-. ..++.+.++... .+ +.+-+..-..+.|+|..++++.++ + +.|-+||.... +|..++.|-.-. +.
T Consensus 295 ~~-----pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s-~~ 365 (561)
T COG5354 295 YM-----PASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTS-YC 365 (561)
T ss_pred cc-----ccceeecccccc-eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCce-Ee
Confidence 32 116666666643 11 222223344677888899988765 2 89999999875 555577666555 56
Q ss_pred EEecCCCEEEEE-------eCCcEEEEecC
Q 046773 430 AFVGDDRHVAAS-------CGTNIHLWDFG 452 (453)
Q Consensus 430 a~s~d~~~lasg-------~D~~IklWDl~ 452 (453)
.++||+.++-++ .|+.|+|||+.
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEec
Confidence 789999987543 28999999975
|
|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=97.63 E-value=3.9e-05 Score=54.84 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhh
Q 046773 46 VEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTR 95 (453)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~ 95 (453)
+..||.|+..+|+.|++ ..+++.+++||++|+.+.++..+|.+.|+
T Consensus 3 ~~~LP~~il~~Il~~l~----~~~~~~l~~vsk~~~~~~~~~~~~~~~~r 48 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLD----PKDLLRLSLVSKRWRSLVDSPRLWKKIIR 48 (48)
T ss_dssp HHHS-HHHHHHHHHTS-----HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred HHHCCHHHHHHHHHHCc----HHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence 47899999999999987 66999999999999999999999988764
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.073 Score=54.50 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=56.6
Q ss_pred EEEEecCCEEEEEeCCC-ccc--cCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCC-eEEEEeC--CeEEEEECCC
Q 046773 340 TSVDVNAEAYIVVENRE-LEN--QNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQG-YALMCVE--GVIRVWEVEG 413 (453)
Q Consensus 340 ~~~~~~g~~l~s~s~dg-~~~--~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~-~lls~s~--~tIrlWD~~t 413 (453)
.+++++++++..+...+ ... .+.+.+-+.|+.+++.+..+... .....+++++|++ .+.+... ++|.+-|+++
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 67888888877643211 000 11226777788888888877542 3467889999999 6665553 8999999999
Q ss_pred CeEEEEe
Q 046773 414 GEYMYSF 420 (453)
Q Consensus 414 G~~l~tL 420 (453)
++.+.++
T Consensus 332 ~k~i~~i 338 (352)
T TIGR02658 332 GKELSSV 338 (352)
T ss_pred CeEEeee
Confidence 9999887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0034 Score=61.81 Aligned_cols=246 Identities=11% Similarity=0.193 Sum_probs=130.2
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeec-CC-----cceEEeeeccee-------cCce-EE-EEeCCCceeeEEEEe
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDD-VA-----NETRTAHFGSVM-------DDGV-LI-DFTGCSRYWVGLYAG 256 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~-~g-----~~~~~~~~~~v~-------~~~~-~v-~Fs~dg~~~~~LaSg 256 (453)
.++++.|+ |..|++|-..|.+.++.-+. .| ...++.|...+. .+.+ .+ -|.+.|+- -.|.|
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~-hFLls- 105 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN-HFLLS- 105 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc-eEEEe-
Confidence 35667776 66788877778777765332 12 122444533221 0111 12 34555443 22444
Q ss_pred eCCCeEEEeeCCCCcE--------------EecccccCCcc-----------eeeee----eeeeeccceeEEEEcCCc-
Q 046773 257 LAGRAFHIWDRQAEEV--------------FVGGDLTDHNT-----------VMGWR----MLTEFTEFVGRVRVTSHE- 306 (453)
Q Consensus 257 S~D~tIrvWD~~tg~~--------------~~g~~l~~~~~-----------v~~w~----~l~~h~~~v~~v~~s~~~- 306 (453)
..|+|||||-+....+ ..|+.++.+.. +..-. ....|+-.++++.|..+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 6899999998876520 01222211100 00000 124667778889987665
Q ss_pred eEEEEcCCcEEEEECCCCceEEEE---eeccCC---eEEE--EEEecC-CEEEEEeCCCccccCcceEEEEEcCCC----
Q 046773 307 SAVACTSSRVITFDLRNQGMVLGE---RGYGRG---LYVT--SVDVNA-EAYIVVENRELENQNRRLAIVRRVDTF---- 373 (453)
Q Consensus 307 ~~vas~d~tIrlWDl~t~~~~~~~---~g~~~~---~~v~--~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~tg---- 373 (453)
++++++|-.|-||+++-....... ..|... ..++ .|+|.- +.+.-.|+.| +|++-|+...
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG-------~Ikl~DlRq~alcd 258 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG-------EIKLNDLRQSALCD 258 (460)
T ss_pred eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC-------cEEehhhhhhhhcc
Confidence 556566678999999753211111 111100 0012 233332 2344456677 8998877621
Q ss_pred --eeEEEEEecC----------CCeeEEEEeeCCCeEEEEeCCeEEEEECCC-CeEEEEecccC------------CceE
Q 046773 374 --EEVCRFSLRA----------DRNVNVMGCMNQGYALMCVEGVIRVWEVEG-GEYMYSFRERI------------GEEV 428 (453)
Q Consensus 374 --~~v~~l~~~~----------~~v~~~~~~~~~~~lls~s~~tIrlWD~~t-G~~l~tL~gh~------------~~~V 428 (453)
..+..++..+ ..+..+-|+++++++++-.--||+|||+.. ..|+.|++-|. +. |
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa-i 337 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA-I 337 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccc-e
Confidence 1111111111 113335677788887654449999999986 47888887663 22 3
Q ss_pred E-----EEecCCCEEEEE-eCCcEEEE
Q 046773 429 I-----AFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 429 ~-----a~s~d~~~lasg-~D~~IklW 449 (453)
. .|+.|++.+.|| +.+..-|+
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred eeeEEEEecCCcccccccccccceeee
Confidence 3 567788888887 65544443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.021 Score=56.04 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=90.2
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE--E--cCCeEEEEeCCCCEEEEEeecCC---cceEE
Q 046773 156 YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII--I--TDSQLIFATLDGDIHVAVIDDVA---NETRT 228 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~--f--~g~~LasgS~D~tIkvWd~~~~g---~~~~~ 228 (453)
.|+-+-.++.|.++....-+....|+|-...... .+.++. + .+..++++-.++.+.+=+....- .+..+
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~----~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk 162 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS----VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK 162 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhh----heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc
Confidence 3555556677888877776666666653321110 111333 3 36677777667776632221100 13445
Q ss_pred eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC---
Q 046773 229 AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH--- 305 (453)
Q Consensus 229 ~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~--- 305 (453)
.|.-... ...|+.... +.+++||.|+.+.-||++....+. |+..+-|+.-|.++.-+|.
T Consensus 163 ~He~E~W----ta~f~~~~p--nlvytGgDD~~l~~~D~R~p~~~i------------~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 163 VHEFEAW----TAKFSDKEP--NLVYTGGDDGSLSCWDIRIPKTFI------------WHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred ccceeee----eeecccCCC--ceEEecCCCceEEEEEecCCccee------------eecceeeecceEEEecCCCCCc
Confidence 5543222 134544322 357899999999999999543221 4556678888888877643
Q ss_pred ceEEEEcCCcEEEEECCCCceE
Q 046773 306 ESAVACTSSRVITFDLRNQGMV 327 (453)
Q Consensus 306 ~~~vas~d~tIrlWDl~t~~~~ 327 (453)
-+++++.|..|++||.++.+..
T Consensus 225 ~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 225 YIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eEEEeccccceeeeehhcccCc
Confidence 4677788899999999965443
|
|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.5e-05 Score=73.13 Aligned_cols=55 Identities=22% Similarity=0.424 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHH-hhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhhccCC
Q 046773 46 VEALAAQVAIEAS-RSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRRIWGR 100 (453)
Q Consensus 46 ~~~l~~~~~~~~~-~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~~~~~ 100 (453)
|+-||.|+.+.|+ ..+..+++-.+|.+++.||++|+..++++.+|+..|...|.+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~ 162 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQR 162 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHH
Confidence 4779999999999 666668899999999999999999999999999999998844
|
|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=97.44 E-value=6.7e-05 Score=51.37 Aligned_cols=40 Identities=20% Similarity=0.407 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHH
Q 046773 49 LAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHR 92 (453)
Q Consensus 49 l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~ 92 (453)
||.|+..+|+.+++ .++++++.+||+.|+.+.+++.+|+.
T Consensus 1 lP~~ll~~I~~~l~----~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLP----PKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 68999999999987 67999999999999999999999964
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0001 Score=80.39 Aligned_cols=186 Identities=12% Similarity=0.130 Sum_probs=113.0
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEE-EeCCC-CEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIF-ATLDG-DIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~Las-gS~D~-tIkvWd~~ 220 (453)
.+|++|++ +.|+.|+..|.||++++.+|........|.. +|.-|.+ ||+.+.+ .+... -..+|+..
T Consensus 1104 fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S--------avT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS--------AVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred eeeEEeecCCceEEeeeccceEEEEEccCcccccccccccc--------ccccccccCCcceeeeeccccCchHHHhccc
Confidence 79999996 6999999999999999999998777776643 4555655 4665444 44444 35789987
Q ss_pred cCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 221 DVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 221 ~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
..+ .|+++. ...|-|+...+. -+.|.....+.|+|++|+..+..- +++. + +..-.-|
T Consensus 1176 s~~~~~Hsf~e--------d~~vkFsn~~q~---r~~gt~~d~a~~YDvqT~~~l~ty-lt~~--------~-~~~y~~n 1234 (1516)
T KOG1832|consen 1176 STGGPRHSFDE--------DKAVKFSNSLQF---RALGTEADDALLYDVQTCSPLQTY-LTDT--------V-TSSYSNN 1234 (1516)
T ss_pred cccCccccccc--------cceeehhhhHHH---HHhcccccceEEEecccCcHHHHh-cCcc--------h-hhhhhcc
Confidence 643 233322 224677766443 123444456789999998721100 0000 0 1111225
Q ss_pred EEEEcCCceEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEE
Q 046773 299 RVRVTSHESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC 377 (453)
Q Consensus 299 ~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~ 377 (453)
++.|+|...++- .|+ -|||++..+.++.+ +.. -..--.|.|+|+.++. +-.|||+.|...++
T Consensus 1235 ~a~FsP~D~LIl-ndG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVII------------NSEIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1235 LAHFSPCDTLIL-NDG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVII------------NSEIWDMRTFKLLH 1297 (1516)
T ss_pred ccccCCCcceEe-eCc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEe------------echhhhhHHHHHHh
Confidence 677888665443 222 59999987766654 111 0011347888887765 33699998875444
Q ss_pred E
Q 046773 378 R 378 (453)
Q Consensus 378 ~ 378 (453)
.
T Consensus 1298 ~ 1298 (1516)
T KOG1832|consen 1298 S 1298 (1516)
T ss_pred c
Confidence 3
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.052 Score=52.76 Aligned_cols=196 Identities=14% Similarity=0.051 Sum_probs=108.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecce
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSV 234 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v 234 (453)
.+||.|+.-+..++|...|.+-..-+-.-+.. + ..-+...+..-..+.-+|.|.|+|+-+++. +..-...|-..+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn--~--v~~~~r~cd~~~~~~i~sndht~k~~~~~~-~s~~~~~h~~~~ 159 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNN--D--VTLVKRYCDLKFPLNIASNDHTGKTMVVSG-DSNKFAVHNQNL 159 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeeccccc--c--hhhhhhhcccccceeeccCCcceeEEEEec-Ccccceeecccc
Confidence 48999999999999999987643222111100 0 001122232333466689999999999986 433444454332
Q ss_pred ecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC-c-EEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEE
Q 046773 235 MDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE-E-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVA 310 (453)
Q Consensus 235 ~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg-~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~va 310 (453)
. ...++.++|++| +++-+.-..|-.+.+... + .... .+..-++.--++.|+.+. .+++
T Consensus 160 ~--~ns~~~snd~~~---~~~Vgds~~Vf~y~id~~sey~~~~-------------~~a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 160 T--QNSLHYSNDPSW---GSSVGDSRRVFRYAIDDESEYIENI-------------YEAPTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred c--eeeeEEcCCCce---EEEecCCCcceEEEeCCccceeeee-------------EecccCCCceeeeeccCcceEEEE
Confidence 2 224789999998 556666666777777653 3 2110 011111222345566443 4777
Q ss_pred EcCCcEEEEECCCCceEEEE----ee-ccCCeEEEEEEecCC--EEEEEeCCCccccCcceEEEEEcCCCeeEEEEE
Q 046773 311 CTSSRVITFDLRNQGMVLGE----RG-YGRGLYVTSVDVNAE--AYIVVENRELENQNRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 311 s~d~tIrlWDl~t~~~~~~~----~g-~~~~~~v~~~~~~g~--~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~ 380 (453)
+-|+++.|||++..+.++.+ +. |.....+.-|++-|- .|...-.-+ -+.|-|..++...+.+.
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs-------~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFS-------RVHVVDTRNYVNHQVIV 291 (344)
T ss_pred ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcc-------eEEEEEcccCceeeEEe
Confidence 88999999999987665543 22 333334444554332 222211112 45566666665544443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.23 Score=50.09 Aligned_cols=216 Identities=15% Similarity=0.101 Sum_probs=118.6
Q ss_pred CCCEEEEEeec-CC-cceEEeeecceecCceEEEEeCCCceeeEEEEee---CCCeEEEeeCC--CCc-EEecccccCCc
Q 046773 211 DGDIHVAVIDD-VA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL---AGRAFHIWDRQ--AEE-VFVGGDLTDHN 282 (453)
Q Consensus 211 D~tIkvWd~~~-~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS---~D~tIrvWD~~--tg~-~~~g~~l~~~~ 282 (453)
++-|.+|++++ .| +....... ...+..-|+|+|+++. |+++- .++.|--+.++ +|+ ++..+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~--~~~nptyl~~~~~~~~---LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~----- 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVA--ELGNPTYLAVNPDQRH---LYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ----- 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhcc--ccCCCceEEECCCCCE---EEEEEecCCcCcEEEEEEcCCCCeEEEeecc-----
Confidence 35589999885 23 21111110 0112224899999986 66654 35666665554 477 443211
Q ss_pred ceeeeeeeeeeccceeEEEEcCCceE--EEEc-CCcEEEEECCCCceEEE---EeeccCC----------eEEEEEEecC
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHESA--VACT-SSRVITFDLRNQGMVLG---ERGYGRG----------LYVTSVDVNA 346 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~~~--vas~-d~tIrlWDl~t~~~~~~---~~g~~~~----------~~v~~~~~~g 346 (453)
++.++ +-..|++++++.+ +|.- .+.|.+.=++..+.+.. ..-|... .-..-++|++
T Consensus 85 ------~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 85 ------TLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred ------ccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence 12222 2266888887744 4433 37899888865332211 1111111 1124578888
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCee--EEEEEec-CCCeeEEEEeeCCCeEEEEeC--CeEEEEECCC--C--eEE
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEE--VCRFSLR-ADRNVNVMGCMNQGYALMCVE--GVIRVWEVEG--G--EYM 417 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~--v~~l~~~-~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~t--G--~~l 417 (453)
+.+++..... | -|.+++++.|.. .....+. ..+-|.++|+|++++.-.... ++|-+|+... | ++|
T Consensus 157 ~~l~v~DLG~-----D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 157 RYLVVPDLGT-----D-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred CEEEEeecCC-----c-eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 8877765433 2 567788876532 1111112 244688999999998766665 9999998887 3 334
Q ss_pred EEe---cc-cCCceEE----EEecCCCEEEEE--eCCcEEEEec
Q 046773 418 YSF---RE-RIGEEVI----AFVGDDRHVAAS--CGTNIHLWDF 451 (453)
Q Consensus 418 ~tL---~g-h~~~~V~----a~s~d~~~lasg--~D~~IklWDl 451 (453)
+++ +. -++. .+ .+++||++|..+ ....|-++.+
T Consensus 231 Q~i~tlP~dF~g~-~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 231 QTIDTLPEDFTGT-NWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred eeeccCccccCCC-CceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 433 21 1222 22 467999999655 3445555543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.21 Score=52.55 Aligned_cols=191 Identities=8% Similarity=0.030 Sum_probs=101.7
Q ss_pred EEEcCCe-EEEEeCCC---CEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE
Q 046773 198 IIITDSQ-LIFATLDG---DIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV 272 (453)
Q Consensus 198 i~f~g~~-LasgS~D~---tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~ 272 (453)
.++||+. ++..|.++ .|.++|+.+ | ...+....+.. ...+|+|||+.++...+-..+..|-+.|+++++.
T Consensus 195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~~~lt~~~g~~----~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 195 WANKEQTAFYYTSYGERKPTLYKYNLYT-GKKEKIASSQGML----VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred ECCCCCcEEEEEEccCCCCEEEEEECCC-CcEEEEecCCCcE----EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 4566774 66666652 366667766 4 22222211111 1367999998753322222335577778888762
Q ss_pred EecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcC-C--cEEEEECCCCceEEEEeeccCCeEEEEEEecCC
Q 046773 273 FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTS-S--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 273 ~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d-~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~ 347 (453)
-. |+.+......-.|+|++. +..++. + .|-+.|+.+++.. +....+.. ...++|+|+
T Consensus 270 ~~---------------LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-rlt~~g~~--~~~~SPDG~ 331 (419)
T PRK04043 270 TQ---------------ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-QVVFHGKN--NSSVSTYKN 331 (419)
T ss_pred EE---------------cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-eCccCCCc--CceECCCCC
Confidence 11 111111112235788763 333432 2 5888899887652 22111211 247899999
Q ss_pred EEEEEeCCCccc--cCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCC
Q 046773 348 AYIVVENRELEN--QNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEG 413 (453)
Q Consensus 348 ~l~s~s~dg~~~--~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~t 413 (453)
.++-.+.....+ .+...+.+-++++++. ..++... ......++|||+.++..+. ..+.+.++..
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 987766543111 0112455667777653 4444332 1224678999998875543 3456666643
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.25 Score=47.47 Aligned_cols=189 Identities=14% Similarity=0.077 Sum_probs=101.9
Q ss_pred EEEeC-CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc-CCceEEEEcCCcEEE
Q 046773 241 IDFTG-CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT-SHESAVACTSSRVIT 318 (453)
Q Consensus 241 v~Fs~-dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s-~~~~~vas~d~tIrl 318 (453)
+.|.+ +|.+ +++--..+.|..||..+++... ..... ...+.+. +++.+..+....+.+
T Consensus 5 p~~d~~~g~l---~~~D~~~~~i~~~~~~~~~~~~----------------~~~~~-~~G~~~~~~~g~l~v~~~~~~~~ 64 (246)
T PF08450_consen 5 PVWDPRDGRL---YWVDIPGGRIYRVDPDTGEVEV----------------IDLPG-PNGMAFDRPDGRLYVADSGGIAV 64 (246)
T ss_dssp EEEETTTTEE---EEEETTTTEEEEEETTTTEEEE----------------EESSS-EEEEEEECTTSEEEEEETTCEEE
T ss_pred eEEECCCCEE---EEEEcCCCEEEEEECCCCeEEE----------------EecCC-CceEEEEccCCEEEEEEcCceEE
Confidence 45666 4543 4565567899999999887321 01112 3445565 667766666677777
Q ss_pred EECCCCceEEEEe---eccCCeEE--EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee
Q 046773 319 FDLRNQGMVLGER---GYGRGLYV--TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 319 WDl~t~~~~~~~~---g~~~~~~v--~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~ 393 (453)
.|+.+++...... +....... .+++++|+.+++-+...... ....-+||.++....+..+...-.....+++++
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~-~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS-GIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSP 143 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT-CGGSEEEEEEETTSEEEEEEEEESSEEEEEEET
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc-cccccceEEECCCCeEEEEecCcccccceEECC
Confidence 7999975432221 11123333 45677788777655443111 100145655444322222221222345788999
Q ss_pred CCCeEEEEeC--CeEEEEECCC-Ce------EEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 394 NQGYALMCVE--GVIRVWEVEG-GE------YMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 394 ~~~~lls~s~--~tIrlWD~~t-G~------~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
+++.+..+.. +.|..+|+.. +. .+..+.+-.+. .. ++..+|++.++. ..+.|.++|-
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGY-PDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCE-EEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcC-CCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 9888775544 8888888853 22 12233322222 22 566788877766 6677777663
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0015 Score=64.99 Aligned_cols=121 Identities=14% Similarity=0.228 Sum_probs=78.6
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee-eeeeeccceeEEE---EcCCceEEEEcCCcE
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR-MLTEFTEFVGRVR---VTSHESAVACTSSRV 316 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~-~l~~h~~~v~~v~---~s~~~~~vas~d~tI 316 (453)
+.|...+. .|+.|-..+.|-+-|++.+.. | .+|. +---|.+.|.+++ |+..-+++++.+++|
T Consensus 258 lQf~~s~n---Lv~~GcRngeI~~iDLR~rnq--G---------~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gki 323 (425)
T KOG2695|consen 258 LQFAGSDN---LVFNGCRNGEIFVIDLRCRNQ--G---------NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKI 323 (425)
T ss_pred HHhcccCC---eeEecccCCcEEEEEeeeccc--C---------CCcceEEEEcCcchhhhhhhccccceEeeccCcCce
Confidence 34554443 366788889999999987631 1 0111 1113456666665 455555666678999
Q ss_pred EEEECCCCce---EEEEeeccCCeEEEE--EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec
Q 046773 317 ITFDLRNQGM---VLGERGYGRGLYVTS--VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR 382 (453)
Q Consensus 317 rlWDl~t~~~---~~~~~g~~~~~~v~~--~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~ 382 (453)
+|||++.-+| +.+.+||.....-.- +.+....++++..|- -.|||.++.|..++++.+.
T Consensus 324 kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc-------ytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 324 KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC-------YTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eEeeehhhhcccceeeeecccccccccccccccccceEEEccCee-------EEEEEecccCceeeccCCC
Confidence 9999998777 666678865433222 344445666666666 8899999999988887654
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.023 Score=56.78 Aligned_cols=223 Identities=14% Similarity=0.216 Sum_probs=119.9
Q ss_pred CCeEEEEeCCCCEEEEEeecCCc-ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC--c-EEeccc
Q 046773 202 DSQLIFATLDGDIHVAVIDDVAN-ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE--E-VFVGGD 277 (453)
Q Consensus 202 g~~LasgS~D~tIkvWd~~~~g~-~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg--~-~~~g~~ 277 (453)
...+++.|.|.|+|||--...|. -+-.-|... .....+.+.++.+. |+.|=..+++.=.-+.-- + ++
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP--~~~~~~~y~~e~~~---L~vg~~ngtvtefs~sedfnkm~~---- 106 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMP--SPCSAMEYVSESRR---LYVGQDNGTVTEFALSEDFNKMTF---- 106 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhhhhCC--CCceEeeeeccceE---EEEEEecceEEEEEhhhhhhhcch----
Confidence 45689999999999995433231 000001110 00112456666554 556655555544433221 0 11
Q ss_pred ccCCcceeeeeeeeeeccceeEEEEc-CCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCC
Q 046773 278 LTDHNTVMGWRMLTEFTEFVGRVRVT-SHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRE 356 (453)
Q Consensus 278 l~~~~~v~~w~~l~~h~~~v~~v~~s-~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg 356 (453)
.+.-..|..+|..+-|+ +.+.+++.+-++--.|--...++-+- ++.-....++..++-..-..+--.+
T Consensus 107 ---------~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg--~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 107 ---------LKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG--GYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred ---------hhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc--ceEeeccCCCCceeeEEEEeccccc
Confidence 01224677788888887 44455555544444554322121110 0000000001111111111111122
Q ss_pred ccccCcceEEEE--EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeE-EEEecccCCceEEEEe
Q 046773 357 LENQNRRLAIVR--RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEY-MYSFRERIGEEVIAFV 432 (453)
Q Consensus 357 ~~~~~~~~i~Iw--~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~-l~tL~gh~~~~V~a~s 432 (453)
.+.+- ..+.-..+.++..|.+.+..+...+..+.+.+++. ..|-+||+--++. .+.+.||.+. |.+++
T Consensus 176 -------qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~k-V~~l~ 247 (404)
T KOG1409|consen 176 -------QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDK-VQALS 247 (404)
T ss_pred -------ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhh-hhhhh
Confidence 22221 12233456777777787888888887788788877 8899999986543 4678899888 87554
Q ss_pred --cCCCEEEEE-eCCcEEEEecC
Q 046773 433 --GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 433 --~d~~~lasg-~D~~IklWDl~ 452 (453)
+--++|.|. .|+.|-+||..
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhheeeeeccCCCeEEEEecc
Confidence 455678887 99999999975
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.012 Score=57.78 Aligned_cols=185 Identities=9% Similarity=0.031 Sum_probs=98.0
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc---CCceEEEEcCCcE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT---SHESAVACTSSRV 316 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s---~~~~~vas~d~tI 316 (453)
.++|++-|.. ++++-.++.+.+=+.....+.. + ++++.|..+..-..|+ |+-+.++++|+.+
T Consensus 126 slD~~~~~~~---i~vs~s~G~~~~v~~t~~~le~---------v---q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l 190 (339)
T KOG0280|consen 126 SLDISTSGTK---IFVSDSRGSISGVYETEMVLEK---------V---QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSL 190 (339)
T ss_pred EEEeeccCce---EEEEcCCCcEEEEecceeeeee---------c---ccccccceeeeeeecccCCCceEEecCCCceE
Confidence 4677777764 5665566666633332222211 1 2345665555556665 5445777888999
Q ss_pred EEEECC-CCceEEEE-eeccCCeEEEEE---EecCCEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCCCeeEEE
Q 046773 317 ITFDLR-NQGMVLGE-RGYGRGLYVTSV---DVNAEAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVNVM 390 (453)
Q Consensus 317 rlWDl~-t~~~~~~~-~g~~~~~~v~~~---~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~~~ 390 (453)
+.||++ .+.++.+. +-|.. -|.++ .+.+..++++|.|. .|++||.. -++++..-... .+|-.+.
T Consensus 191 ~~~D~R~p~~~i~~n~kvH~~--GV~SI~ss~~~~~~I~TGsYDe-------~i~~~DtRnm~kPl~~~~v~-GGVWRi~ 260 (339)
T KOG0280|consen 191 SCWDIRIPKTFIWHNSKVHTS--GVVSIYSSPPKPTYIATGSYDE-------CIRVLDTRNMGKPLFKAKVG-GGVWRIK 260 (339)
T ss_pred EEEEecCCcceeeecceeeec--ceEEEecCCCCCceEEEecccc-------ceeeeehhcccCccccCccc-cceEEEE
Confidence 999999 44555442 33433 34554 35567999999999 99999987 35544322111 2233333
Q ss_pred EeeCC-CeEE-EEeCCeEEEEECCCC--e---EEEEecccCCceEE--EEecCCCEEEEE--eCCcEE-EEe
Q 046773 391 GCMNQ-GYAL-MCVEGVIRVWEVEGG--E---YMYSFRERIGEEVI--AFVGDDRHVAAS--CGTNIH-LWD 450 (453)
Q Consensus 391 ~~~~~-~~ll-s~s~~tIrlWD~~tG--~---~l~tL~gh~~~~V~--a~s~d~~~lasg--~D~~Ik-lWD 450 (453)
.+|.- ..++ +|=-+-.||=++..+ + .+...++|..- +. ....-.-.|||. +|+.|+ +|-
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl-~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSL-CYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccce-eeccccccccceeeeeeccccceeeeee
Confidence 33311 1111 121133445444432 3 33444555433 32 111111246663 899976 883
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.42 Score=48.18 Aligned_cols=193 Identities=13% Similarity=0.137 Sum_probs=110.5
Q ss_pred eEEEEeCCCceeeEEEEee-CCCeEEEeeCCC-CcEEe-----cccccCCcceeeeeeeeeeccceeEEEEcCCceEE-E
Q 046773 239 VLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQA-EEVFV-----GGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV-A 310 (453)
Q Consensus 239 ~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~t-g~~~~-----g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v-a 310 (453)
+.|+++++|++ |++++ .-+.|.+.-++. |.+.. -|.-..| | -+.-+..+-.+.|+|++..+ +
T Consensus 92 ~yvsvd~~g~~---vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p------~-~rQ~~~h~H~a~~tP~~~~l~v 161 (346)
T COG2706 92 CYVSVDEDGRF---VFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP------H-ERQESPHVHSANFTPDGRYLVV 161 (346)
T ss_pred eEEEECCCCCE---EEEEEccCceEEEEEcccCCccccceeeeecCCCCC------C-ccccCCccceeeeCCCCCEEEE
Confidence 35899999997 66665 347899998865 55210 0110001 0 01112236677899988544 4
Q ss_pred EcC--CcEEEEECCCCceEEEE-----eeccCCeEEEEEEecCCEE-EEEeCCCccccCcceEEEEEcCCC----eeEEE
Q 046773 311 CTS--SRVITFDLRNQGMVLGE-----RGYGRGLYVTSVDVNAEAY-IVVENRELENQNRRLAIVRRVDTF----EEVCR 378 (453)
Q Consensus 311 s~d--~tIrlWDl~t~~~~~~~-----~g~~~~~~v~~~~~~g~~l-~s~s~dg~~~~~~~~i~Iw~~~tg----~~v~~ 378 (453)
++= +.|.++|++.|...... .|-+.. =..|.|+++.. +..-.++ +|-+|..+.. +++++
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR--Hi~FHpn~k~aY~v~EL~s-------tV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR--HIVFHPNGKYAYLVNELNS-------TVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred eecCCceEEEEEcccCccccccccccCCCCCcc--eEEEcCCCcEEEEEeccCC-------EEEEEEEcCCCceEEEeee
Confidence 442 57999999977543221 122211 25688888764 3334555 9999988763 34444
Q ss_pred EEecC------CCeeEEEEeeCCCeEEEEeC--CeEEEEECC--CCeEEEEeccc-CCc---eEEEEecCCCEEEEE--e
Q 046773 379 FSLRA------DRNVNVMGCMNQGYALMCVE--GVIRVWEVE--GGEYMYSFRER-IGE---EVIAFVGDDRHVAAS--C 442 (453)
Q Consensus 379 l~~~~------~~v~~~~~~~~~~~lls~s~--~tIrlWD~~--tG~~l~tL~gh-~~~---~V~a~s~d~~~lasg--~ 442 (453)
+..-| .+.-.+..+++|++|.++.- ..|-+.-+. +|+ |..+.-. ++. +=..|.+++++|+.+ .
T Consensus 233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 32222 33445677889998877654 666666554 444 3332211 122 112677999988766 4
Q ss_pred CCcEEEEec
Q 046773 443 GTNIHLWDF 451 (453)
Q Consensus 443 D~~IklWDl 451 (453)
+.+|.++.+
T Consensus 312 sd~i~vf~~ 320 (346)
T COG2706 312 SDNITVFER 320 (346)
T ss_pred CCcEEEEEE
Confidence 456888754
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00035 Score=76.45 Aligned_cols=186 Identities=12% Similarity=0.144 Sum_probs=111.5
Q ss_pred eEEEEEEcC--CeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCC-eEEEeeCC
Q 046773 194 AVSGIIITD--SQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGR-AFHIWDRQ 268 (453)
Q Consensus 194 ~V~~i~f~g--~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~-tIrvWD~~ 268 (453)
...+++|++ +.|+-|+.-|.||+.++.+ | ......|...+. .|.-+-||.. +|-|.+... -..+|++.
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT----~vePs~dgs~--~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVT----LVEPSVDGST--QLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccc----cccccCCcce--eeeeccccCchHHHhccc
Confidence 456788874 5799999999999999988 5 222333433322 2556667765 355555444 45799986
Q ss_pred C-CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEE-Ee---eccCCeEEEE
Q 046773 269 A-EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLG-ER---GYGRGLYVTS 341 (453)
Q Consensus 269 t-g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~-~~---g~~~~~~v~~ 341 (453)
+ +.. - |++ ....+|.|+... .++++-.+.+.|+|++|+..+.+ +. +.........
T Consensus 1176 s~~~~--~------------Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1176 STGGP--R------------HSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred cccCc--c------------ccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 5 110 0 111 234568887643 35655556788999999865554 22 2222223345
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEec
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~ 421 (453)
|+|+.+.+. .|| -+||+...+.++.|.--.. --.-.|+|++..++.- -.|||+.|-+.|++.+
T Consensus 1238 FsP~D~LIl---ndG---------vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIIN----SEIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1238 FSPCDTLIL---NDG---------VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIIN----SEIWDMRTFKLLHSVP 1300 (1516)
T ss_pred cCCCcceEe---eCc---------eeeeeccHHHHhhhhhhee-cccccccCCCceEEee----chhhhhHHHHHHhcCc
Confidence 677665443 455 6899988877766531111 1122466776665532 2689999877666543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.023 Score=56.28 Aligned_cols=188 Identities=13% Similarity=0.089 Sum_probs=109.8
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEE-EcCCcEEE
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVA-CTSSRVIT 318 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~va-s~d~tIrl 318 (453)
-+|++|+.. +|.+-..+.|.|+.....+... ..|+|..|...|+.|..+|.. .++. +.|..-.|
T Consensus 16 hAwn~drt~---iAv~~~~~evhiy~~~~~~~w~-----------~~htls~Hd~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 16 HAWNSDRTQ---IAVSPNNHEVHIYSMLGADLWE-----------PAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred eeecCCCce---EEeccCCceEEEEEecCCCCce-----------eceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence 367777664 5666666788898876655211 126788999999999998765 4444 55778999
Q ss_pred EECCCCceE---EEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee--EEEE--EecCCCeeEEEE
Q 046773 319 FDLRNQGMV---LGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE--VCRF--SLRADRNVNVMG 391 (453)
Q Consensus 319 WDl~t~~~~---~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~--v~~l--~~~~~~v~~~~~ 391 (453)
|-...++.- +.+.-+..+......+|..++++++|... .|.||-.+.... +... ....+.|.++..
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar-------~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR-------LISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc-------EEEEEEEecccceehhhhhCCccccceeeeec
Confidence 998544321 11112233333444578889999999888 888885442110 0000 001122344444
Q ss_pred eeCCCeEEEEeC-CeEEEE----------------ECCC--CeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEE
Q 046773 392 CMNQGYALMCVE-GVIRVW----------------EVEG--GEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 392 ~~~~~~lls~s~-~tIrlW----------------D~~t--G~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklW 449 (453)
+|+.-.+++++. +..||. +-+. |+.+..+..--++ |. .|+|+|.+|+=. .|.+|.+=
T Consensus 155 hpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggw-vh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 155 HPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGW-VHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred cCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCc-eeeeEeCCCCCEeeEecCCCceEEe
Confidence 455444444442 444444 2221 3444444322344 76 788999999866 88888775
Q ss_pred e
Q 046773 450 D 450 (453)
Q Consensus 450 D 450 (453)
|
T Consensus 234 d 234 (361)
T KOG1523|consen 234 D 234 (361)
T ss_pred e
Confidence 5
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.06 Score=55.94 Aligned_cols=138 Identities=12% Similarity=0.059 Sum_probs=82.9
Q ss_pred eeccceeEEEEc--CCceEEEEcCC-cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 292 EFTEFVGRVRVT--SHESAVACTSS-RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 292 ~h~~~v~~v~~s--~~~~~vas~d~-tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
++...|.-.++. +...+++..|+ .+-++|.++++.-..+.+ -..+....++++|..++.+.... .+-+-
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~-lg~I~av~vs~dGK~~vvaNdr~-------el~vi 428 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD-LGNIEAVKVSPDGKKVVVANDRF-------ELWVI 428 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC-ccceEEEEEcCCCcEEEEEcCce-------EEEEE
Confidence 444445544554 55677777775 799999999764333322 22344456788888777766555 55555
Q ss_pred EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE--eC---CeEEEEECCCCeEEEEecccCCce-EEEEecCCCEE
Q 046773 369 RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC--VE---GVIRVWEVEGGEYMYSFRERIGEE-VIAFVGDDRHV 438 (453)
Q Consensus 369 ~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~--s~---~tIrlWD~~tG~~l~tL~gh~~~~-V~a~s~d~~~l 438 (453)
|+++|.....=+.....+....+++++++++-+ ++ ..|||.|+.+++....-. .++.- --||.||+++|
T Consensus 429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYL 503 (668)
T ss_pred EecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEE
Confidence 777875322111122335566777777776643 22 789999999988643221 11110 12788899976
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0088 Score=59.74 Aligned_cols=142 Identities=9% Similarity=0.092 Sum_probs=95.9
Q ss_pred EeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC-Cce-EEEEcCCcEEEEECCCC-----ceE
Q 046773 255 AGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS-HES-AVACTSSRVITFDLRNQ-----GMV 327 (453)
Q Consensus 255 SgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~-~~~-~vas~d~tIrlWDl~t~-----~~~ 327 (453)
|.+-+.-|-|=|++||-.- .+ .-.+-|-+.+|.. +.+ +-+|-.+.|-..||+.+ .|.
T Consensus 229 s~G~sqqv~L~nvetg~~q---------------sf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQ---------------SF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred cccccceeEEEEeeccccc---------------cc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3445666778888887511 01 1124466667764 334 44567789999999875 233
Q ss_pred EEEeeccCCeEEEE---EEecCCEEEEEeCCCccccCcceEEEEEcCCCee---EEEEEecCCCeeEEEEe--eCCCeEE
Q 046773 328 LGERGYGRGLYVTS---VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE---VCRFSLRADRNVNVMGC--MNQGYAL 399 (453)
Q Consensus 328 ~~~~g~~~~~~v~~---~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~---v~~l~~~~~~v~~~~~~--~~~~~ll 399 (453)
+++ .| ...|++ +.+++..|++.+.+| +|++||..--+| +++..+|-+....+-++ +..+.++
T Consensus 293 ~rl-yh--~Ssvtslq~Lq~s~q~LmaS~M~g-------kikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~ 362 (425)
T KOG2695|consen 293 QRL-YH--DSSVTSLQILQFSQQKLMASDMTG-------KIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIF 362 (425)
T ss_pred EEE-Ec--CcchhhhhhhccccceEeeccCcC-------ceeEeeehhhhcccceeeeecccccccccccccccccceEE
Confidence 332 23 345566 467888999889999 999999886566 88888876554444333 3456677
Q ss_pred EEeC-CeEEEEECCCCeEEEEecc
Q 046773 400 MCVE-GVIRVWEVEGGEYMYSFRE 422 (453)
Q Consensus 400 s~s~-~tIrlWD~~tG~~l~tL~g 422 (453)
++++ .-.|||.+.+|..+.+++-
T Consensus 363 s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred EccCeeEEEEEecccCceeeccCC
Confidence 7666 8999999999999999864
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.2 Score=46.75 Aligned_cols=189 Identities=11% Similarity=0.094 Sum_probs=109.0
Q ss_pred EeCCCceeeEEEEeeCCCeEEEeeCCCCc--EEecc-ccc-CCcceeeeeeeeeecccee---EEEEcCCceEEEEcCCc
Q 046773 243 FTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VFVGG-DLT-DHNTVMGWRMLTEFTEFVG---RVRVTSHESAVACTSSR 315 (453)
Q Consensus 243 Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~-~l~-~~~~v~~w~~l~~h~~~v~---~v~~s~~~~~vas~d~t 315 (453)
.+.||+.+ ++ +..+.|-++|.++.. .+.-+ .+. .+. +.....++- ..++.+...++--+.+.
T Consensus 274 ~nsDGkrI--vF--q~~GdIylydP~td~lekldI~lpl~rk~k-------~~k~~~pskyledfa~~~Gd~ia~VSRGk 342 (668)
T COG4946 274 ANSDGKRI--VF--QNAGDIYLYDPETDSLEKLDIGLPLDRKKK-------QPKFVNPSKYLEDFAVVNGDYIALVSRGK 342 (668)
T ss_pred cCCCCcEE--EE--ecCCcEEEeCCCcCcceeeecCCccccccc-------cccccCHHHhhhhhccCCCcEEEEEecCc
Confidence 35667764 33 345679999998876 22211 111 010 011111111 11222333333334444
Q ss_pred EEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCC
Q 046773 316 VITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQ 395 (453)
Q Consensus 316 IrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~ 395 (453)
.-|-+...+-.+. .++...+.-..+..+++..+.+..||. .+-|.+.++++. ..+...-..+.++..+++|
T Consensus 343 aFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD------~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dG 413 (668)
T COG4946 343 AFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGD------KLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDG 413 (668)
T ss_pred EEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCc------eEEEEecCCceE-EEeeCCccceEEEEEcCCC
Confidence 4444433332222 244444555667777888999999881 567899988763 2232222447788888899
Q ss_pred CeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-e----CCcEEEEecC
Q 046773 396 GYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-C----GTNIHLWDFG 452 (453)
Q Consensus 396 ~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~----D~~IklWDl~ 452 (453)
++++.+.+ ..|-+-|+.+|.....=+.. ...|. .++|++++||-+ - -..|||+|..
T Consensus 414 K~~vvaNdr~el~vididngnv~~idkS~-~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 414 KKVVVANDRFELWVIDIDNGNVRLIDKSE-YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred cEEEEEcCceEEEEEEecCCCeeEecccc-cceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 99888888 78888899999753322222 22366 567999999965 3 4588998863
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.85 Score=44.82 Aligned_cols=189 Identities=8% Similarity=0.071 Sum_probs=89.9
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC--------CceEEEE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS--------HESAVAC 311 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~--------~~~~vas 311 (453)
.|+||||+.. ||.+..-++|+|+|+...++|.-- |. .. ........|..+.|-. .++++-.
T Consensus 48 kl~WSpD~tl---La~a~S~G~i~vfdl~g~~lf~I~----p~-~~---~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~ 116 (282)
T PF15492_consen 48 KLAWSPDCTL---LAYAESTGTIRVFDLMGSELFVIP----PA-MS---FPGDLSDAIAGLIFLEYKKSAQWSYELLVIN 116 (282)
T ss_pred EEEECCCCcE---EEEEcCCCeEEEEecccceeEEcC----cc-cc---cCCccccceeeeEeeccccccccceeEEEEe
Confidence 5899999985 777788899999999876655311 00 00 0011223444444421 1344545
Q ss_pred cCCcEEEEEC--CCC---ceEEEEe---eccCCeEEEEEEecCCEEEEEeCCCccccC----cceEEEEEcCCCeeEEEE
Q 046773 312 TSSRVITFDL--RNQ---GMVLGER---GYGRGLYVTSVDVNAEAYIVVENRELENQN----RRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 312 ~d~tIrlWDl--~t~---~~~~~~~---g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~----~~~i~Iw~~~tg~~v~~l 379 (453)
-++.+|-+=+ .|. +..+... .+.+++....+++..+.|++++....++.. ..=+.-|.+-.
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~------- 189 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS------- 189 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC-------
Confidence 5555554433 221 2233321 234455444556666666555433210000 00122222211
Q ss_pred EecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 380 SLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
..|.... +...+.. +.....+-.+|.+-+.+.......-.+. |. ++||||..||+- .+|.|-||++.
T Consensus 190 -~~Pyyk~--v~~~~~~--~~~~~~~~~~~~~~~~~~fs~~~~~~d~-i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 190 -DSPYYKQ--VTSSEDD--ITASSKRRGLLRIPSFKFFSRQGQEQDG-IFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred -CCCcEEE--ccccCcc--ccccccccceeeccceeeeeccccCCCc-eEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 1121100 0011111 1111123355555543332211112344 54 889999999998 99999999985
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.013 Score=36.81 Aligned_cols=36 Identities=28% Similarity=0.550 Sum_probs=29.4
Q ss_pred CeEEEEecccCCceEEEE--ecCCCEEEEE-eCCcEEEEe
Q 046773 414 GEYMYSFRERIGEEVIAF--VGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 414 G~~l~tL~gh~~~~V~a~--s~d~~~lasg-~D~~IklWD 450 (453)
++++..+..|... |+++ .+++..++++ .|+.|++||
T Consensus 2 ~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGP-VTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCc-eeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5677888888887 8854 5677888888 999999997
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.077 Score=58.25 Aligned_cols=182 Identities=9% Similarity=0.033 Sum_probs=110.4
Q ss_pred eEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE
Q 046773 194 AVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF 273 (453)
Q Consensus 194 ~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~ 273 (453)
++++.++++..++.|+.++.+.+-+.+. -..+...|... +-+|.+ ++|+|.|++|-|--+-|.+..
T Consensus 41 ~is~~av~~~~~~~GtH~g~v~~~~~~~-~~~~~~~~s~~----------~~~Gey---~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHRGAVYLTTCQG-NPKTNFDHSSS----------ILEGEY---VASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred HHHHHHhhcceeeeccccceEEEEecCC-ccccccccccc----------ccCCce---EEEecCCCcEEEeeccCCccc
Confidence 4455677889999999999888876553 11111111110 235665 889999999999887776621
Q ss_pred ecccccCCcceeeeeeeeeeccceeEEEEcCC------ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC
Q 046773 274 VGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH------ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 274 ~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~------~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~ 347 (453)
. -....-++.+|+++|+ ..+++++...+-|..=.--+......+|.....|.++...|+
T Consensus 107 ~---------------~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~ 171 (846)
T KOG2066|consen 107 T---------------QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN 171 (846)
T ss_pred e---------------eEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEecCc
Confidence 1 0122357889999987 234544442255543111111111134555567899999999
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEE-----EEeeCCCeEEEEeCCeEEEEECC
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNV-----MGCMNQGYALMCVEGVIRVWEVE 412 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~-----~~~~~~~~lls~s~~tIrlWD~~ 412 (453)
.++=++.+| +||.|..+++.+..+......+|.- ..-.+...++.+=+.+|+|--+.
T Consensus 172 lIAWand~G--------v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 172 LIAWANDDG--------VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEecCCC--------cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 999888887 6899999887766554332223322 22234455665655778877776
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.1 Score=47.78 Aligned_cols=104 Identities=11% Similarity=0.166 Sum_probs=64.4
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCC-C---eeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCC
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDT-F---EEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEG 413 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g---~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~t 413 (453)
..|.|++.++.+... +..+++++-+++ + ..+..+.- ..-..+.++|.|++++.++- +++...|+.-
T Consensus 453 WEP~gdkF~vi~g~~----~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 453 WEPHGDKFAVISGNT----VKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eccCCCeEEEEEccc----cccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 357788887776654 234788887663 2 22222221 11346778899999886642 8999999985
Q ss_pred CeEEEEe-cccCCceEE-EEecCCCEEEEE-e------CCcEEEEecC
Q 046773 414 GEYMYSF-RERIGEEVI-AFVGDDRHVAAS-C------GTNIHLWDFG 452 (453)
Q Consensus 414 G~~l~tL-~gh~~~~V~-a~s~d~~~lasg-~------D~~IklWDl~ 452 (453)
..+..+- ..|... -. -..|.||+++++ + |..-+||+|+
T Consensus 527 a~~k~~~~~eh~~a-t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 527 ADLKDTASPEHFAA-TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred hhhhhccCcccccc-ccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 4443332 223222 11 456999999875 3 7788888874
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.38 Score=49.29 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=33.8
Q ss_pred CeEEEEEEecC--C-EEEEEeCCCcEEEEECCCCeEEEEecCC
Q 046773 144 GLTCRCLTLSD--L-YLACGFADGAVRLFDLTTRLHVRTFRPQ 183 (453)
Q Consensus 144 ~v~v~~lafs~--~-~LaSGS~D~TIrlWD~~tg~~~~tl~gh 183 (453)
+..|..++||+ + +|..+|.+++|||-|++|..++.++..|
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~ 235 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY 235 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc
Confidence 35588999997 3 6899999999999999999998887754
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.71 Score=45.14 Aligned_cols=177 Identities=12% Similarity=0.022 Sum_probs=96.5
Q ss_pred EEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeec---cceeEEEEcCCceEEEEcCCcEEEEECCCCceEE
Q 046773 252 GLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT---EFVGRVRVTSHESAVACTSSRVITFDLRNQGMVL 328 (453)
Q Consensus 252 ~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~---~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~ 328 (453)
.||.|+.-+..++|...|.+.+. +.-..|. .-+...+...-.+.+++.|.|+|+.+++-+..-.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~-------------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~ 152 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHL-------------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF 152 (344)
T ss_pred EEEeccccceeeeecccCcccce-------------eeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc
Confidence 58888888999999999887221 0000010 1122223333457788889999999887542111
Q ss_pred EEeeccCCeEE--EEEEecCCEEEEEeCCCccccCcceEEEEEcCC-CeeEEEEEe--cCCCeeEEEEeeCCCeEEEEeC
Q 046773 329 GERGYGRGLYV--TSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-FEEVCRFSL--RADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 329 ~~~g~~~~~~v--~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~v~~l~~--~~~~v~~~~~~~~~~~lls~s~ 403 (453)
.-|.++..+ .++++++...+++.... .|-.+.++. ++.+..... ..+......++......+++.-
T Consensus 153 --~~h~~~~~~ns~~~snd~~~~~~Vgds~-------~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 153 --AVHNQNLTQNSLHYSNDPSWGSSVGDSR-------RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ 223 (344)
T ss_pred --eeeccccceeeeEEcCCCceEEEecCCC-------cceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec
Confidence 123333223 44677777777776665 556666654 333333222 2233444555555555555554
Q ss_pred -CeEEEEECCCC-eEEEEe----cccCCceEE--EEecCCC---EEEEEeCCcEEEEec
Q 046773 404 -GVIRVWEVEGG-EYMYSF----RERIGEEVI--AFVGDDR---HVAASCGTNIHLWDF 451 (453)
Q Consensus 404 -~tIrlWD~~tG-~~l~tL----~gh~~~~V~--a~s~d~~---~lasg~D~~IklWDl 451 (453)
+++-|||+..- ....+. +.|.|. +. .|++-|. .+.|-.=+.+.|-|+
T Consensus 224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa-~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEISSTRPHHNGA-FRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred CCcEEEEEecccccchhhhcccCCCCCCc-eEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 99999999863 332222 335565 65 5675332 333323345555554
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.22 Score=51.58 Aligned_cols=245 Identities=9% Similarity=-0.022 Sum_probs=132.5
Q ss_pred EEEEEec-CCEEEEEeCCCcEEEEECCC--Ce-EEEEecCCCCCccccccceEEEEEEcCCeEEEEeC-CCCEEEEEeec
Q 046773 147 CRCLTLS-DLYLACGFADGAVRLFDLTT--RL-HVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATL-DGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs-~~~LaSGS~D~TIrlWD~~t--g~-~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~-D~tIkvWd~~~ 221 (453)
|+-+..+ -+++.++|.|+.+|.|--.. |. -+.-++.|. ++... -+++.++....|.+. |..+|+.|++.
T Consensus 12 i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL----~~I~s--l~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 12 ITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL----GVILS--LAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred eeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHH----HHHHh--hhccccceeEeeccCcccceeEEEeec
Confidence 4444444 47999999999999998643 22 122233332 21111 124567778888777 99999999876
Q ss_pred CC-cceEEeeecceecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 222 VA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 222 ~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
.. +...+.. .+ ...+.. +...|.-+..||.+. .++.|-|.|-...-+-.+ +.-.-|+++|-+
T Consensus 86 ~DminmiKL~--~l-Pg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~------------~fkklH~sPV~~ 149 (558)
T KOG0882|consen 86 FDMINMIKLV--DL-PGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG------------YFKKLHFSPVKK 149 (558)
T ss_pred cchhhhcccc--cC-CCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccc------------eecccccCceEE
Confidence 22 1111110 00 000001 111121112244433 345677877654331111 112346789999
Q ss_pred EEEcCCceEEEEcC--CcEEEEECCC-CceEEE-----Eeecc---------CCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 300 VRVTSHESAVACTS--SRVITFDLRN-QGMVLG-----ERGYG---------RGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 300 v~~s~~~~~vas~d--~tIrlWDl~t-~~~~~~-----~~g~~---------~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
+++.+......|.| +.|.-|..+- -+.+.+ ....+ ......+|++++..+..-+.|.
T Consensus 150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr------ 223 (558)
T KOG0882|consen 150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR------ 223 (558)
T ss_pred EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc------
Confidence 99987665555555 7899999872 111111 00000 0111245778887776666555
Q ss_pred ceEEEEEcCCCeeEEEEEecC--------------------------------CC-eeEEEEeeCCCeEEEEeCCeEEEE
Q 046773 363 RLAIVRRVDTFEEVCRFSLRA--------------------------------DR-NVNVMGCMNQGYALMCVEGVIRVW 409 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~--------------------------------~~-v~~~~~~~~~~~lls~s~~tIrlW 409 (453)
.|++++..+|..++.+.-.+ .. ....+|.-.+.+++-++-=-||+-
T Consensus 224 -kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvi 302 (558)
T KOG0882|consen 224 -KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVI 302 (558)
T ss_pred -EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEE
Confidence 99999988875433321110 00 012344445666665544348999
Q ss_pred ECCCCeEEEEe
Q 046773 410 EVEGGEYMYSF 420 (453)
Q Consensus 410 D~~tG~~l~tL 420 (453)
++.|+++.+.|
T Consensus 303 n~~tn~v~ri~ 313 (558)
T KOG0882|consen 303 NLDTNTVVRIL 313 (558)
T ss_pred EeecCeEEEEe
Confidence 99999998887
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.6 Score=46.03 Aligned_cols=233 Identities=10% Similarity=0.072 Sum_probs=112.7
Q ss_pred EEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeC--------------
Q 046773 195 VSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLA-------------- 258 (453)
Q Consensus 195 V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~-------------- 258 (453)
+..++++ |..|++. .-.-|.+|.-...+ ...+.....| .-++|||.+++ |.+=+.
T Consensus 35 ~~~~~~SP~G~~l~~~-~~~~V~~~~g~~~~-~l~~~~~~~V----~~~~fSP~~kY---L~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 35 VAYVSESPLGTYLFSE-HAAGVECWGGPSKA-KLVRFRHPDV----KYLDFSPNEKY---LVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred hhheeecCcchheehh-hccceEEccccchh-heeeeecCCc----eecccCcccce---eeeeccCCccChhhccCCcc
Confidence 4445555 4555542 22337888755522 3333322222 24799999997 444221
Q ss_pred -CCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE-EcCCcEEEEECCCCceE-EEE-eecc
Q 046773 259 -GRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA-CTSSRVITFDLRNQGMV-LGE-RGYG 334 (453)
Q Consensus 259 -D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va-s~d~tIrlWDl~t~~~~-~~~-~g~~ 334 (453)
++.+.|||+++|.+..+-.... -.-.+|. -++|+-+...+| -....+.+.++ |+..- +.. ....
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~-q~~~~Wp----------~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~ 173 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGIS-QPYLGWP----------VLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRP 173 (561)
T ss_pred ccCceeEEeccCceeEeeccccC-Ccccccc----------eeeeeecchhhhhhccCeEEEEec-CCccccCchhhccc
Confidence 3358999999999432110000 0000111 134543333222 12246888887 43221 111 0011
Q ss_pred CCeEEEEEEecCC--EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE------e----
Q 046773 335 RGLYVTSVDVNAE--AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC------V---- 402 (453)
Q Consensus 335 ~~~~v~~~~~~g~--~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~------s---- 402 (453)
. -+..|++++. .-..+----+......+++||.+..+..+.+-++-.-.-..+-+.+.+.+++.- +
T Consensus 174 ~--gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsy 251 (561)
T COG5354 174 V--GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSY 251 (561)
T ss_pred c--ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccce
Confidence 1 1334444332 211111111111223488888888665554433322111234445566665421 1
Q ss_pred -C-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCE--EEEE-eCCcEEEEecC
Q 046773 403 -E-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRH--VAAS-CGTNIHLWDFG 452 (453)
Q Consensus 403 -~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~--lasg-~D~~IklWDl~ 452 (453)
+ .++.|.+++...| ....+-.+. |. ++.|+++. +++| .+.++-+.|+.
T Consensus 252 fgesnLyl~~~~e~~i-~V~~~~~~p-Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 252 FGESNLYLLRITERSI-PVEKDLKDP-VHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred eccceEEEEeeccccc-ceecccccc-ceeeeecccCCceeEEecccccceeecccc
Confidence 1 5788888874333 332244566 76 55687764 4577 88888888875
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.2 Score=49.76 Aligned_cols=88 Identities=9% Similarity=0.135 Sum_probs=48.1
Q ss_pred eEEEEEcCCC-eeEEEEEecCCC-------eeEEEEeeCCCeEEE-EeC-CeEEEEECCCC-eEE---EEe----cc--c
Q 046773 364 LAIVRRVDTF-EEVCRFSLRADR-------NVNVMGCMNQGYALM-CVE-GVIRVWEVEGG-EYM---YSF----RE--R 423 (453)
Q Consensus 364 ~i~Iw~~~tg-~~v~~l~~~~~~-------v~~~~~~~~~~~lls-~s~-~tIrlWD~~tG-~~l---~tL----~g--h 423 (453)
-|.+|+++.. .+...+...|.. +.+.-|+|..-.+.. +++ |+|+|=|+... -|. .++ .+ |
T Consensus 194 rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~ 273 (460)
T COG5170 194 RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV 273 (460)
T ss_pred eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc
Confidence 5677877643 222222233322 334456664433333 333 99999999842 221 111 11 1
Q ss_pred ------CCceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 424 ------IGEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 424 ------~~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
... |. .|++.||+|++-.=-+|+|||..
T Consensus 274 ~ff~eivsS-ISD~kFs~ngryIlsRdyltvkiwDvn 309 (460)
T COG5170 274 DFFEEIVSS-ISDFKFSDNGRYILSRDYLTVKIWDVN 309 (460)
T ss_pred hhHHHHhhh-hcceEEcCCCcEEEEeccceEEEEecc
Confidence 111 22 46789999987766799999974
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=95.55 E-value=2.7 Score=41.35 Aligned_cols=200 Identities=16% Similarity=0.237 Sum_probs=96.3
Q ss_pred EEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC--------eEEEEeCCCCEEEE
Q 046773 148 RCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS--------QLIFATLDGDIHVA 217 (453)
Q Consensus 148 ~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~--------~LasgS~D~tIkvW 217 (453)
+-|+||+ ..||.+..-++|+++|+.. ..+.++.+.+ ...+..+.+|+++.|-.- .|+--..++.++-+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~-~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAM-SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccc-ccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4588886 5899999999999999975 5566776533 222334567888877321 23333344444433
Q ss_pred EeecCC-cceEE-eeecce---ecCce-EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 218 VIDDVA-NETRT-AHFGSV---MDDGV-LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 218 d~~~~g-~~~~~-~~~~~v---~~~~~-~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
-+.. | .+-++ .|+-.+ ...++ .+.++|.-+. .|+.|.....-..+-. . .-.+..|+.|.
T Consensus 125 ~vs~-gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L--LlVgG~~~~~~~~s~a-~-----------~~GLtaWRiL~ 189 (282)
T PF15492_consen 125 LVSV-GTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL--LLVGGCEQNQDGMSKA-S-----------SCGLTAWRILS 189 (282)
T ss_pred EEEc-ccCCcceeeEEEEecccCCCceeEEEEcCCCCE--EEEeccCCCCCccccc-c-----------ccCceEEEEcC
Confidence 3321 1 01111 011000 11111 3567776664 2344433321111100 0 01233355443
Q ss_pred eeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 292 EFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
+-.... .|.-.++.+...+ .+-.+|.+-+.+.-.........+.-.+++|+|..||+...+| .+.+|+++
T Consensus 190 ~~Pyyk-~v~~~~~~~~~~~--~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG-------~lsLW~iP 259 (282)
T PF15492_consen 190 DSPYYK-QVTSSEDDITASS--KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSG-------SLSLWEIP 259 (282)
T ss_pred CCCcEE-EccccCccccccc--cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCC-------eEEEEecC
Confidence 322111 1111111111111 1122444333211101011133456678999999999999999 99999998
Q ss_pred CCe
Q 046773 372 TFE 374 (453)
Q Consensus 372 tg~ 374 (453)
.-.
T Consensus 260 sL~ 262 (282)
T PF15492_consen 260 SLR 262 (282)
T ss_pred cch
Confidence 643
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.023 Score=35.52 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.6
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEE
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFD 170 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD 170 (453)
+++++|++ .++++++.|++|++||
T Consensus 15 i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 15 VTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred eeEEEECCCCCEEEEecCCCeEEEcC
Confidence 78999875 5999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.22 E-value=5.3 Score=42.75 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=26.1
Q ss_pred EecC-CEEEEEeCCCcEEEEECCCCeEEEEecC
Q 046773 151 TLSD-LYLACGFADGAVRLFDLTTRLHVRTFRP 182 (453)
Q Consensus 151 afs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~g 182 (453)
++.+ +++..++.|+.|.-.|++||+.+..+..
T Consensus 106 ~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 106 AYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred EEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 3444 7788888999999999999999887753
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.19 Score=48.76 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=51.2
Q ss_pred eEEEEEEc---CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC
Q 046773 194 AVSGIIIT---DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268 (453)
Q Consensus 194 ~V~~i~f~---g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~ 268 (453)
+|.+++-+ ...++.|+.|+.+-|||+.... ...+..|...+. -|.|+|..-- .|+++|.|+.+--||..
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~----eV~FHpk~p~--~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW----EVHFHPKNPE--HLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh----heeccCCCch--heeEecCCCcEEEEcCC
Confidence 35556544 3568889999999999998722 345566765554 3899998432 38999999999999986
Q ss_pred C
Q 046773 269 A 269 (453)
Q Consensus 269 t 269 (453)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 5
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.41 Score=53.58 Aligned_cols=180 Identities=18% Similarity=0.105 Sum_probs=109.0
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-cceEE
Q 046773 150 LTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA-NETRT 228 (453)
Q Consensus 150 lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g-~~~~~ 228 (453)
+..++..++-|+.-..+-..|+.+++..++..--.. .|.=+...++.|..|..-|+|-+-|.++.. ++++-
T Consensus 143 ~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~--------~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 143 LHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS--------GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred hccCCcceeecchhhheeeeecccceeeeeeeccCC--------ceEEEEecCcEEEeecccceEEeecCCcCceeeeee
Confidence 333566666677777777889999998877642110 133245567888899999999999987733 77888
Q ss_pred eeecceecCceEEEEeCCCceeeEEEEee---------CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 229 AHFGSVMDDGVLIDFTGCSRYWVGLYAGL---------AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 229 ~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS---------~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
.|++.+ .+|+-.|.. |+|++ .|.-|+|||++.=+.+. |-. -+.++ .-
T Consensus 215 aHs~si------SDfDv~GNl---LitCG~S~R~~~l~~D~FvkVYDLRmmral~------PI~--------~~~~P-~f 270 (1118)
T KOG1275|consen 215 AHSGSI------SDFDVQGNL---LITCGYSMRRYNLAMDPFVKVYDLRMMRALS------PIQ--------FPYGP-QF 270 (1118)
T ss_pred ccccce------eeeeccCCe---EEEeecccccccccccchhhhhhhhhhhccC------Ccc--------cccCc-hh
Confidence 888765 366666654 55543 47889999998765321 100 01111 11
Q ss_pred EEEcC---CceEEEEcCCcEEEEE---CCCCceEEEEeeccCCeEEEEEE--ecCCEEEEEeCCCccccCcceEEEEE
Q 046773 300 VRVTS---HESAVACTSSRVITFD---LRNQGMVLGERGYGRGLYVTSVD--VNAEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 300 v~~s~---~~~~vas~d~tIrlWD---l~t~~~~~~~~g~~~~~~v~~~~--~~g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
++|.| ..++++|..+...+=| +.+... ....-+.-+..+.+|+ ++++.++.+..+| .|.+|-
T Consensus 271 lrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~-~~~~v~p~~s~i~~fDiSsn~~alafgd~~g-------~v~~wa 340 (1118)
T KOG1275|consen 271 LRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA-GVKMVNPNGSGISAFDISSNGDALAFGDHEG-------HVNLWA 340 (1118)
T ss_pred hhhcccccceEEEEecccceeeccccccCCCcc-ceeEEccCCCcceeEEecCCCceEEEecccC-------cEeeec
Confidence 44554 2356667777777777 333211 0111122223345554 5566677777777 888995
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.097 Score=54.14 Aligned_cols=193 Identities=11% Similarity=0.057 Sum_probs=111.7
Q ss_pred CCeEEEEeCCCCEEEEEeec-CC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeC-CCeEEEeeCCCCcEEecc
Q 046773 202 DSQLIFATLDGDIHVAVIDD-VA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLA-GRAFHIWDRQAEEVFVGG 276 (453)
Q Consensus 202 g~~LasgS~D~tIkvWd~~~-~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~-D~tIrvWD~~tg~~~~g~ 276 (453)
.+.++++|.|+.+|-|--.. .| +...+.|.+-+. .++.+-||.. ++|.+. |+.+|+.|++.-....+-
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~----sl~~S~dg~L---~~Sv~d~Dhs~KvfDvEn~Dminmi 92 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVIL----SLAVSYDGWL---FRSVEDPDHSVKVFDVENFDMINMI 92 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHH----hhhcccccee---EeeccCcccceeEEEeeccchhhhc
Confidence 56789999999999996332 23 122233443332 2455666653 678776 999999999875422111
Q ss_pred cccCCcceeeeeeeeeeccceeEEEEcCC---ceEEEE-cCCcEEEEECCCCceEEE-E-eeccCCeEEEEEEecCCEEE
Q 046773 277 DLTDHNTVMGWRMLTEFTEFVGRVRVTSH---ESAVAC-TSSRVITFDLRNQGMVLG-E-RGYGRGLYVTSVDVNAEAYI 350 (453)
Q Consensus 277 ~l~~~~~v~~w~~l~~h~~~v~~v~~s~~---~~~vas-~d~tIrlWDl~t~~~~~~-~-~g~~~~~~v~~~~~~g~~l~ 350 (453)
.+. -|.+...++++ .++ .++++. .++.|-+.|-....|... . ..|...+.+.-+.+.++..+
T Consensus 93 KL~---------~lPg~a~wv~s---kGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 93 KLV---------DLPGFAEWVTS---KGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred ccc---------cCCCceEEecC---CCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence 111 12233333322 111 123333 246799999887655432 2 44655555555677777777
Q ss_pred EEeCCCccccCcceEEEEEcCC-CeeEE-----EEEe---------cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 351 VVENRELENQNRRLAIVRRVDT-FEEVC-----RFSL---------RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 351 s~s~dg~~~~~~~~i~Iw~~~t-g~~v~-----~l~~---------~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
|..-.| .|.-|..+- .+-.. .+.. ......++-+++++..+.+-+. .+||+.+..+|
T Consensus 161 SiD~~g-------mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 161 SIDISG-------MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred eccccc-------eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 766667 888887762 11000 0000 0111335667788877766556 99999999999
Q ss_pred eEEEEe
Q 046773 415 EYMYSF 420 (453)
Q Consensus 415 ~~l~tL 420 (453)
+.++.+
T Consensus 234 klvqei 239 (558)
T KOG0882|consen 234 KLVQEI 239 (558)
T ss_pred hhhhhh
Confidence 887655
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.014 Score=57.82 Aligned_cols=44 Identities=18% Similarity=0.417 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhh
Q 046773 47 EALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLT 94 (453)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~ 94 (453)
+.||.|+...|.+.|- -+.|.+++-||++|..+++|+.+|+.+=
T Consensus 99 ~slpDEill~IFs~L~----kk~LL~~~~VC~Rfyr~~~de~lW~~lD 142 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLC----KKELLKVSGVCKRFYRLASDESLWQTLD 142 (419)
T ss_pred ccCCHHHHHHHHHhcc----HHHHHHHHHHHHHHhhccccccceeeec
Confidence 6799999999998876 6799999999999999999999998764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.44 Score=53.31 Aligned_cols=147 Identities=17% Similarity=0.195 Sum_probs=94.3
Q ss_pred EEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeC---------CCCEEEEE
Q 046773 148 RCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATL---------DGDIHVAV 218 (453)
Q Consensus 148 ~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~---------D~tIkvWd 218 (453)
.=+-.+++++-+|..-|||-|=|..+.+.+++|..|.+ .++.+...|.+|+|++. |.-|||||
T Consensus 181 ~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~--------siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 181 TIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG--------SISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred EEEEecCcEEEeecccceEEeecCCcCceeeeeecccc--------ceeeeeccCCeEEEeecccccccccccchhhhhh
Confidence 33555788999999999999999999999999998765 67778888999998753 55689999
Q ss_pred eecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCc-ceeeeeeeeeeccc
Q 046773 219 IDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHN-TVMGWRMLTEFTEF 296 (453)
Q Consensus 219 ~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~-~v~~w~~l~~h~~~ 296 (453)
+.... +.++..+.+.- .+.|.|.=.. .|+..|.-+...+=|..+= .+|. .+ .+..-..+.
T Consensus 253 LRmmral~PI~~~~~P~-----flrf~Psl~t--~~~V~S~sGq~q~vd~~~l--------sNP~~~~---~~v~p~~s~ 314 (1118)
T KOG1275|consen 253 LRMMRALSPIQFPYGPQ-----FLRFHPSLTT--RLAVTSQSGQFQFVDTATL--------SNPPAGV---KMVNPNGSG 314 (1118)
T ss_pred hhhhhccCCcccccCch-----hhhhcccccc--eEEEEecccceeecccccc--------CCCccce---eEEccCCCc
Confidence 87632 45555443321 2556665211 2455566666777663321 0110 00 011111223
Q ss_pred eeEEEEcCCceEEEEc--CCcEEEEE
Q 046773 297 VGRVRVTSHESAVACT--SSRVITFD 320 (453)
Q Consensus 297 v~~v~~s~~~~~vas~--d~tIrlWD 320 (453)
+.+..+++.+.++|-. ++.|-+|-
T Consensus 315 i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 315 ISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeEEecCCCceEEEecccCcEeeec
Confidence 5566777777766644 47899996
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.24 Score=52.54 Aligned_cols=102 Identities=14% Similarity=0.199 Sum_probs=70.5
Q ss_pred EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC------------CeEE
Q 046773 340 TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE------------GVIR 407 (453)
Q Consensus 340 ~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~------------~tIr 407 (453)
..++|-|.+|++----| |.+|=-.....++.| .|| .|+-+-|+|+-+||++-+- ..+.
T Consensus 216 v~wSP~GTYL~t~Hk~G--------I~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG--------IALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred EEecCCceEEEEEeccc--------eeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 45677787777655444 567754444445555 244 3788889999999997541 5799
Q ss_pred EEECCCCeEEEEecccCC-ceEE---EEecCCCEEEEEeCCcEEEEec
Q 046773 408 VWEVEGGEYMYSFRERIG-EEVI---AFVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 408 lWD~~tG~~l~tL~gh~~-~~V~---a~s~d~~~lasg~D~~IklWDl 451 (453)
|||+.||..+++|.--.+ ..+| ..|.|++++|.-.-.+|.|++.
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEt 333 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYET 333 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEec
Confidence 999999999998864222 2234 6789999998763356777653
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.07 E-value=6.5 Score=38.57 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=28.6
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 046773 150 LTLSDLYLACGFADGAVRLFDLTTRLHVRTFR 181 (453)
Q Consensus 150 lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~ 181 (453)
++|++..|-.||.|++...=|..+..|+...+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 56777889999999999999999999998876
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.7 Score=45.85 Aligned_cols=177 Identities=13% Similarity=0.110 Sum_probs=94.4
Q ss_pred EEEeCCCceeeEEEEeeCC-CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEE-EcCC--
Q 046773 241 IDFTGCSRYWVGLYAGLAG-RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVA-CTSS-- 314 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D-~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~va-s~d~-- 314 (453)
-.++|+++.+..+.--... ..|.++|+++++...-. +..++ ...-+|+|++. +.+ +.|+
T Consensus 198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------------~~~g~---~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------------NFNGN---NGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred cccCcCCCceEEEEEecCCCceEEEEeccCCccceee------------ccCCc---cCCccCCCCCCEEEEEECCCCCc
Confidence 3688888875443222233 46899999998821100 01122 22346788763 332 3344
Q ss_pred cEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee
Q 046773 315 RVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 315 tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~ 393 (453)
.|-+-|+.++.. ..+ .+.+.. .-.+++|+|+.++-+|+.+. ...|-+.+++..+ +..++.....-..-..+|
T Consensus 263 ~iy~~dl~~~~~-~~Lt~~~gi~-~~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~-~~riT~~~~~~~~p~~Sp 335 (425)
T COG0823 263 DIYLMDLDGKNL-PRLTNGFGIN-TSPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQ-VTRLTFSGGGNSNPVWSP 335 (425)
T ss_pred cEEEEcCCCCcc-eecccCCccc-cCccCCCCCCEEEEEeCCCC----CcceEEECCCCCc-eeEeeccCCCCcCccCCC
Confidence 577889988653 223 222211 13678999999877765441 1134444555443 344554432222445678
Q ss_pred CCCeEEEEeC--C--eEEEEECCCCeEEEEecccCCceEEEEecCCCEEE
Q 046773 394 NQGYALMCVE--G--VIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVA 439 (453)
Q Consensus 394 ~~~~lls~s~--~--tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~la 439 (453)
++++++..+. + .|-+-|+.++.-++.|..-..-.--+++++++.|.
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEE
Confidence 9999887662 3 36667777765455553211000014556666654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=93.74 E-value=2.6 Score=35.85 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=38.0
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE-EcCCeEEEEeCCCCEEEEE
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII-ITDSQLIFATLDGDIHVAV 218 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~-f~g~~LasgS~D~tIkvWd 218 (453)
+.|+.||.|..||||+=+ +.+..+.-.. .|..++ +.+.+.++|...+||-|++
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~---------~v~~L~~~~~~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITETD---------KVTSLCSLGGGRFAYALANGTVGVYD 69 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEeccc---------ceEEEEEcCCCEEEEEecCCEEEEEe
Confidence 589999999999999865 5555554322 355554 4567788888888886654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.73 E-value=5.2 Score=40.17 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=80.8
Q ss_pred EEEcC-CceEEEEcC--Cc-EEEEECCCCceEEEEe------eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEE
Q 046773 300 VRVTS-HESAVACTS--SR-VITFDLRNQGMVLGER------GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 300 v~~s~-~~~~vas~d--~t-IrlWDl~t~~~~~~~~------g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
++++| +..+++-.. ++ ..+||.++++.+..+. ..+| -+|+++|+.|.+.-.|- +.....|-|||
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH----g~fs~dG~~LytTEnd~--~~g~G~IgVyd 83 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH----GVFSPDGRLLYTTENDY--ETGRGVIGVYD 83 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC----EEEcCCCCEEEEecccc--CCCcEEEEEEE
Confidence 44555 334444332 44 6789999987655431 1222 36899999988764443 22244899999
Q ss_pred cC-CCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-------------------CeEEEEECCCCeEEEE--ec--ccCC
Q 046773 370 VD-TFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-------------------GVIRVWEVEGGEYMYS--FR--ERIG 425 (453)
Q Consensus 370 ~~-tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-------------------~tIrlWD~~tG~~l~t--L~--gh~~ 425 (453)
+. +.+.+.++..+.=+--.+...+|+..|+.+.+ ..+-+=|..+|+.+.. |+ -|.-
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 99 66777777655422223455667767766532 1344557788887765 52 2555
Q ss_pred ceEE--EEecCCCEEEEE
Q 046773 426 EEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 426 ~~V~--a~s~d~~~lasg 441 (453)
+ +. ++.+||..+...
T Consensus 164 S-iRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 164 S-IRHLAVDGDGTVAFAM 180 (305)
T ss_pred c-eeeEEecCCCcEEEEE
Confidence 5 65 556777655543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=93.59 E-value=12 Score=40.04 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=44.6
Q ss_pred cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC-CeEEEEeCCCCEEEEEeecCC
Q 046773 153 SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD-SQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 153 s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g-~~LasgS~D~tIkvWd~~~~g 223 (453)
.+..|..++.|+.|.-.|++||+.+.++.-..............++++.+ .+++.++.|+.|.-.|.++ |
T Consensus 60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~T-G 130 (488)
T cd00216 60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAET-G 130 (488)
T ss_pred ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCC-C
Confidence 45566678888999999999999887765321100000000012234444 7888888999988888877 5
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.029 Score=57.81 Aligned_cols=43 Identities=14% Similarity=0.444 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHh
Q 046773 47 EALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRL 93 (453)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~ 93 (453)
-.||.|+.+|+.+|||+. +|+.+||+|+.|..++-|..=|++.
T Consensus 73 ~~LPpEl~lkvFS~LDtk----sl~r~a~~c~~~n~~AlD~~~~q~i 115 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTK----SLCRAAQCCTMWNKLALDGSCWQHI 115 (483)
T ss_pred ccCCHHHHHHHHHHHhHH----HHHHHHHHHHHhhhhhhccccceee
Confidence 449999999999998854 9999999999999999999999764
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.17 Score=49.18 Aligned_cols=128 Identities=9% Similarity=0.005 Sum_probs=74.0
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEcCCCe-eEEEEEecCCCeeEEEE
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTFE-EVCRFSLRADRNVNVMG 391 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~-~v~~l~~~~~~v~~~~~ 391 (453)
+..+.|+++..+.+..-.--...+...|..|... .++.++.|| .+.|||+.... ++..+..|...+..+.|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg-------~~~l~d~rn~~~p~S~l~ahk~~i~eV~F 231 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDG-------IVGLWDARNVAMPVSLLKAHKAEIWEVHF 231 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCC-------eEEEEEcccccchHHHHHHhhhhhhheec
Confidence 3456788775433222110111122223345444 456678888 99999998753 23334455555667778
Q ss_pred ee-CCCeEEEEeC-CeEEEEECCCCeEEEEe---cccC----------------------CceEEEEecCCCEEEEE-eC
Q 046773 392 CM-NQGYALMCVE-GVIRVWEVEGGEYMYSF---RERI----------------------GEEVIAFVGDDRHVAAS-CG 443 (453)
Q Consensus 392 ~~-~~~~lls~s~-~tIrlWD~~tG~~l~tL---~gh~----------------------~~~V~a~s~d~~~lasg-~D 443 (453)
+| ++..|++|+. |.+--||..+ +.|..- .+|+ -. |++|.--|.+||+| .-
T Consensus 232 Hpk~p~~Lft~sedGslw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~S-insfDV~g~~lVcgtd~ 309 (319)
T KOG4714|consen 232 HPKNPEHLFTCSEDGSLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLS-INSFDVLGPCLVCGTDA 309 (319)
T ss_pred cCCCchheeEecCCCcEEEEcCCC-ceEEecCccccccccccCCcccceEeeecccccccee-eeeeeccCceEEecccc
Confidence 77 6778888887 9999999874 222210 1111 11 33444467789988 55
Q ss_pred CcEEEEe
Q 046773 444 TNIHLWD 450 (453)
Q Consensus 444 ~~IklWD 450 (453)
+.|.|.+
T Consensus 310 eaIyl~~ 316 (319)
T KOG4714|consen 310 EAIYLTR 316 (319)
T ss_pred ceEEEec
Confidence 7777764
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.7 Score=48.18 Aligned_cols=145 Identities=13% Similarity=0.077 Sum_probs=86.0
Q ss_pred eEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEE------------EecCCEEEEEeCCCccccCcceE
Q 046773 298 GRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSV------------DVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 298 ~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~------------~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
+++-.+|.+++.=++...|-+=|..+-+.+.....|. ..|+.+ ++....+..|++|- .+-|
T Consensus 19 ~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~--s~V~~VrWap~~~p~~llS~~~~~lliAsaD~-----~GrI 91 (1062)
T KOG1912|consen 19 NAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQ--SAVTSVRWAPAPSPRDLLSPSSSQLLIASADI-----SGRI 91 (1062)
T ss_pred cccccCccceEEEecCceEEEEehhhhhhhhccccCc--cceeEEEeccCCCchhccCccccceeEEeccc-----cCcE
Confidence 4555677776554555678888988876655544343 344444 22222344444443 1178
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEee---CCCeEE-EEeC-CeEEEEECCCCeEEEEecccCCceEEEEe---cCCCE
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCM---NQGYAL-MCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFV---GDDRH 437 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~---~~~~ll-s~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s---~d~~~ 437 (453)
-|||..++..+..+.-+.+.++.+.+-+ +++.++ +-.+ ++|-||+..||+.+....--+.. ..+|. +|.+.
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i-Ls~f~~DPfd~rh 170 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI-LSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc-eeeeeeCCCCcce
Confidence 8899888877777766666666666554 344444 3444 99999999999987664322223 33455 35565
Q ss_pred EE-EEeCCcEEEEe
Q 046773 438 VA-ASCGTNIHLWD 450 (453)
Q Consensus 438 la-sg~D~~IklWD 450 (453)
+. .+..|.|.+-+
T Consensus 171 ~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCK 184 (1062)
T ss_pred EEEEccCceEEEEe
Confidence 53 34555555443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.84 E-value=2.7 Score=46.65 Aligned_cols=114 Identities=12% Similarity=0.155 Sum_probs=67.5
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC------------ce
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH------------ES 307 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~------------~~ 307 (453)
.++.+|.|= +|=| ....|-|=|..+-+++ +.+.-|...|+.|+..|. .+
T Consensus 20 A~Dw~~~GL----iAyg-shslV~VVDs~s~q~i--------------qsie~h~s~V~~VrWap~~~p~~llS~~~~~l 80 (1062)
T KOG1912|consen 20 AADWSPSGL----IAYG-SHSLVSVVDSRSLQLI--------------QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQL 80 (1062)
T ss_pred ccccCccce----EEEe-cCceEEEEehhhhhhh--------------hccccCccceeEEEeccCCCchhccCccccce
Confidence 356677652 3333 3456888888776643 234456677888877531 24
Q ss_pred EEEEcC--CcEEEEECCCCceEEEEeeccCCeEEEEE----EecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 308 AVACTS--SRVITFDLRNQGMVLGERGYGRGLYVTSV----DVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 308 ~vas~d--~tIrlWDl~t~~~~~~~~g~~~~~~v~~~----~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
++|+.| |.|-|||...+..+.-+..+.....-.+. +-+.+.++...... ++-+|+.+||+.+-..
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss-------~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS-------TLVLWNTDTGEKFWKY 151 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCc-------EEEEEEccCCceeecc
Confidence 567776 88999999886443222222211111221 22334566666666 9999999999765443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.7 Score=46.33 Aligned_cols=111 Identities=10% Similarity=0.090 Sum_probs=74.6
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcC---C
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTS---S 314 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d---~ 314 (453)
.|.++|+|+-.. ++-|-+=.+|.|+|++-.-.+.- -.++-|++.|+|.+. ++|+-+ +
T Consensus 275 dv~W~~s~~EF~-VvyGfMPAkvtifnlr~~~v~df-----------------~egpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 275 DVTWSPSGREFA-VVYGFMPAKVTIFNLRGKPVFDF-----------------PEGPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred EEEECCCCCEEE-EEEecccceEEEEcCCCCEeEeC-----------------CCCCccceEECCCCCEEEEeecCCCCC
Confidence 478999987654 44567778889999865444321 025678899998774 444432 7
Q ss_pred cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 315 RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 315 tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
.|-+||+.+.+++-... .....+..++|+|+.+++++-.- -=+.|+-+|||+..
T Consensus 337 ~mEvwDv~n~K~i~~~~--a~~tt~~eW~PdGe~flTATTaP-RlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 337 DMEVWDVPNRKLIAKFK--AANTTVFEWSPDGEYFLTATTAP-RLRVDNGIKIWHYT 390 (566)
T ss_pred ceEEEeccchhhccccc--cCCceEEEEcCCCcEEEEEeccc-cEEecCCeEEEEec
Confidence 89999999977765542 22344567899999999987652 01224478999874
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.54 Score=50.25 Aligned_cols=70 Identities=4% Similarity=-0.026 Sum_probs=52.7
Q ss_pred CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 336 GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 336 ~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
.+.+.+++|+.++++.|..|| ++.+||...+... ++-.+=...-++++|+|..++++++ |.+.+||++-.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~Dg-------SiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDG-------SIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecCC-------eEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 445667788899999999999 9999999876322 2111111245678889999999998 99999999854
|
|
| >KOG3926 consensus F-box proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.077 Score=51.55 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhh------ccC---CCCcCcchhHHHHHH
Q 046773 47 EALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRR------IWG---RTNLLHATWRDEYIY 114 (453)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~------~~~---~~~~~~~~Wk~~y~~ 114 (453)
.-||.|+-..|+. +++|+.+|..+|||-.+-..|++++.+|+++|.= +-. .....+..||..|-.
T Consensus 203 ~dLP~e~vl~Il~---rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~ 276 (332)
T KOG3926|consen 203 HDLPLECVLNILL---RLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQ 276 (332)
T ss_pred ccchHHHHHHHHH---HccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHH
Confidence 6799999999984 4468999999999999999999999999999951 111 112234679888843
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=90.53 E-value=16 Score=34.74 Aligned_cols=211 Identities=15% Similarity=0.060 Sum_probs=108.8
Q ss_pred EEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC
Q 046773 149 CLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 149 ~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g 223 (453)
+..|++ .++.+--..++|..||..+++... +.-. ...+++++ +..|+.+..++. .+.|..+ +
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~----------~~~G~~~~~~~g~l~v~~~~~~-~~~d~~~-g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP----------GPNGMAFDRPDGRLYVADSGGI-AVVDPDT-G 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS----------SEEEEEEECTTSEEEEEETTCE-EEEETTT-T
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC----------CCceEEEEccCCEEEEEEcCce-EEEecCC-C
Confidence 445553 467777788999999999997643 2211 12335554 455666655544 4447766 4
Q ss_pred -cceEEeee-cc-eecCceEEEEeCCCceeeEEEEeeCC--------CeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 224 -NETRTAHF-GS-VMDDGVLIDFTGCSRYWVGLYAGLAG--------RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 224 -~~~~~~~~-~~-v~~~~~~v~Fs~dg~~~~~LaSgS~D--------~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
+.++.... +. -.....-++++|+|+.+. +-+.. +.|-.++.. ++.- .+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~---t~~~~~~~~~~~~g~v~~~~~~-~~~~---------------~~~~ 131 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYV---TDSGGGGASGIDPGSVYRIDPD-GKVT---------------VVAD 131 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEE---EEECCBCTTCGGSEEEEEEETT-SEEE---------------EEEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEE---EecCCCccccccccceEEECCC-CeEE---------------EEec
Confidence 23322221 11 000112378999998642 32222 334455555 4421 0111
Q ss_pred eccceeEEEEcCCce--EEEEc-CCcEEEEECCCCce-EE---EE-eeccCC-eE-EEEEEecCCEEEEEeCCCccccCc
Q 046773 293 FTEFVGRVRVTSHES--AVACT-SSRVITFDLRNQGM-VL---GE-RGYGRG-LY-VTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 293 h~~~v~~v~~s~~~~--~vas~-d~tIrlWDl~t~~~-~~---~~-~g~~~~-~~-v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
.-...|.++|+|++. +++.+ .+.|..+|+..... +. .. ...... .. =.+++.+|+.+++.-..+
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~------ 205 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG------ 205 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT------
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC------
Confidence 124457899998873 34433 36788888864322 11 11 111111 11 145666777766655666
Q ss_pred ceEEEEEcCCCeeEEEEEecCCCeeEEEEe-eCCCeEE
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADRNVNVMGC-MNQGYAL 399 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~-~~~~~ll 399 (453)
.|.+.+.+ |+.+..+..-.....+++|. ++.+.|.
T Consensus 206 -~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 206 -RIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp -EEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred -EEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 67777766 77777776553456666663 3445544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=89.47 E-value=1.7 Score=46.63 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=47.9
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~ 221 (453)
|.|.++++ +.|+.|.-|++|.|||..++....+ +. . + ...-++. +|..++.||.-|.+.+||+.-
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka--~--~-----~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA--E--F-----IPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee--c--c-----cceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 56777775 7999999999999999988854433 21 0 0 1122444 677899999999999999865
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=89.36 E-value=13 Score=31.76 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCC
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~ 268 (453)
.+|..||+- -|..||.|..|||++-+
T Consensus 8 ~d~d~dg~~--eLlvGs~D~~IRvf~~~ 33 (111)
T PF14783_consen 8 FDFDGDGEN--ELLVGSDDFEIRVFKGD 33 (111)
T ss_pred EecCCCCcc--eEEEecCCcEEEEEeCC
Confidence 467777763 58899999999999743
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.32 E-value=2.1 Score=47.84 Aligned_cols=103 Identities=10% Similarity=0.202 Sum_probs=65.5
Q ss_pred EEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee-EEEEEecCCCeeEEEEeeCC-CeEEEEeC--C----eEEEE
Q 046773 338 YVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE-VCRFSLRADRNVNVMGCMNQ-GYALMCVE--G----VIRVW 409 (453)
Q Consensus 338 ~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~-v~~l~~~~~~v~~~~~~~~~-~~lls~s~--~----tIrlW 409 (453)
.+.++++++..++.++.+| +||-++.... ++.++..+..+.......+. .++++.+. . .||||
T Consensus 27 ~isc~~s~~~~vvigt~~G---------~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADG---------RVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred ceeEEcCCCceEEEeeccc---------cEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence 5678888888999999999 7777776533 36666666542222223344 34444432 3 79999
Q ss_pred ECCC------CeEEEE--ecccCCc------eEEEEecCCCEEEEE-eCCcEEEE
Q 046773 410 EVEG------GEYMYS--FRERIGE------EVIAFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 410 D~~t------G~~l~t--L~gh~~~------~V~a~s~d~~~lasg-~D~~IklW 449 (453)
|++- -+|+++ +..|..+ .+-+++-|-+.||.| .||.|...
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~ 152 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICY 152 (933)
T ss_pred cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEE
Confidence 9963 356633 2333221 123677888999999 99998765
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.04 E-value=15 Score=36.60 Aligned_cols=31 Identities=10% Similarity=0.298 Sum_probs=20.8
Q ss_pred EEEEeeCCCeEEEEeC--CeEEEEECCCCeEEE
Q 046773 388 NVMGCMNQGYALMCVE--GVIRVWEVEGGEYMY 418 (453)
Q Consensus 388 ~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~ 418 (453)
+++...+.+.++..|- +..-+||.+||..+.
T Consensus 284 siA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 284 SIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred heeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 4444444555554443 788999999998754
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=88.64 E-value=19 Score=39.77 Aligned_cols=136 Identities=12% Similarity=0.004 Sum_probs=79.4
Q ss_pred CcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccc----------------------------c----
Q 046773 314 SRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELEN----------------------------Q---- 360 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~----------------------------~---- 360 (453)
+.+-+.|.++.+...+. ++.. -.-..++++|..+.+.+.+.+.- .
T Consensus 215 ~~vSvID~etmeV~~qV~Vdgn--pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDGN--LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred EEEEEEECccceEEEEEEeCCC--cccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 56778898887655442 2211 11245677777766654322100 0
Q ss_pred -CcceEEEEEcCC----C-eeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeE------------EEEe
Q 046773 361 -NRRLAIVRRVDT----F-EEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEY------------MYSF 420 (453)
Q Consensus 361 -~~~~i~Iw~~~t----g-~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~------------l~tL 420 (453)
+++.+.|.|..+ + +.+..+. -+...-.+.++||+++++.++. .+|-|-|+++-+. ....
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 112466666665 2 2222222 1222345778999999987775 9999999998542 2222
Q ss_pred cccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 421 RERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 421 ~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+--.+..-++|.++|...+|- -|..|-.||++
T Consensus 372 evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 372 ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 222344234888888766666 88899999975
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.43 E-value=3.3 Score=46.02 Aligned_cols=140 Identities=10% Similarity=0.034 Sum_probs=91.4
Q ss_pred cceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 295 EFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 295 ~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
+.+.|.+++...++.++.++.|.+.+..-. +.+.-.| .+.+.+|+.++++|.|| ++-|-...+++
T Consensus 40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~--~~~~~~~------s~~~~~Gey~asCS~DG-------kv~I~sl~~~~ 104 (846)
T KOG2066|consen 40 DAISCCAVHDKFFALGTHRGAVYLTTCQGN--PKTNFDH------SSSILEGEYVASCSDDG-------KVVIGSLFTDD 104 (846)
T ss_pred hHHHHHHhhcceeeeccccceEEEEecCCc--ccccccc------cccccCCceEEEecCCC-------cEEEeeccCCc
Confidence 445566677777788888888888876532 1111112 12267799999999999 88888888887
Q ss_pred eEEEEEecCCCeeEEEEeeC-----CCeEEEEeC-CeEEEEECCC-CeEEE-EecccCCceEEEEecCCCEEEEEeCCcE
Q 046773 375 EVCRFSLRADRNVNVMGCMN-----QGYALMCVE-GVIRVWEVEG-GEYMY-SFRERIGEEVIAFVGDDRHVAASCGTNI 446 (453)
Q Consensus 375 ~v~~l~~~~~~v~~~~~~~~-----~~~lls~s~-~tIrlWD~~t-G~~l~-tL~gh~~~~V~a~s~d~~~lasg~D~~I 446 (453)
..+++.++.- +.+++++|+ .++.++++. | +-|..-.= |.... .+..-.|. |.+++=-|..||=++|-.|
T Consensus 105 ~~~~~df~rp-iksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~-I~~i~W~g~lIAWand~Gv 181 (846)
T KOG2066|consen 105 EITQYDFKRP-IKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP-IHSIKWRGNLIAWANDDGV 181 (846)
T ss_pred cceeEecCCc-ceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc-eEEEEecCcEEEEecCCCc
Confidence 7777766532 566777775 456666665 5 54442210 11111 23333455 8888888889888877789
Q ss_pred EEEecC
Q 046773 447 HLWDFG 452 (453)
Q Consensus 447 klWDl~ 452 (453)
+++|+.
T Consensus 182 ~vyd~~ 187 (846)
T KOG2066|consen 182 KVYDTP 187 (846)
T ss_pred EEEecc
Confidence 999875
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.19 E-value=48 Score=36.99 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=51.5
Q ss_pred CCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeE---------------EEEecCCCCCccccccceEEEEEEc--CC
Q 046773 143 DGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLH---------------VRTFRPQHSDRLGQFSRAVSGIIIT--DS 203 (453)
Q Consensus 143 d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~---------------~~tl~gh~~~~~~~~s~~V~~i~f~--g~ 203 (453)
..|-..|++++- .+||+|+.||.+|+=.+.|... -+||.||.. +|.-+.+. .+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~--------sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA--------SVMVVTWNENNQ 84 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc--------eEEEEEeccccc
Confidence 345577888874 6999999999999998876532 255666543 45545554 45
Q ss_pred eEEEEeCCCCEEEEEeec
Q 046773 204 QLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~ 221 (453)
+|-|...+|-|.||-+-.
T Consensus 85 KLTtSDt~GlIiVWmlyk 102 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIVWMLYK 102 (1189)
T ss_pred cccccCCCceEEEEeeec
Confidence 788777889999998755
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=88.07 E-value=29 Score=38.28 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=63.5
Q ss_pred CCcEEEEECCC----C-ceEEEE-eecc-CCeEEEEEEecCCEEEEEeC-CCccccCcceEEEEEcCCCee---------
Q 046773 313 SSRVITFDLRN----Q-GMVLGE-RGYG-RGLYVTSVDVNAEAYIVVEN-RELENQNRRLAIVRRVDTFEE--------- 375 (453)
Q Consensus 313 d~tIrlWDl~t----~-~~~~~~-~g~~-~~~~v~~~~~~g~~l~s~s~-dg~~~~~~~~i~Iw~~~tg~~--------- 375 (453)
+++|.+.|.++ + +.+... ++.. |+ ..++|||+.++.++. +. ++.|-|+.+.+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHG---V~vSPDGkylyVanklS~-------tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHG---VNTSPDGKYFIANGKLSP-------TVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccc---eEECCCCCEEEEeCCCCC-------cEEEEEChhhhhhhhccCCcc
Confidence 46799999998 3 333322 3321 22 468899998776543 44 999999887432
Q ss_pred ---EEEEEecCCCeeEEEEeeCCCeEEEEe-CCeEEEEECCC----------CeEEEEecccC--CceEE-----EEecC
Q 046773 376 ---VCRFSLRADRNVNVMGCMNQGYALMCV-EGVIRVWEVEG----------GEYMYSFRERI--GEEVI-----AFVGD 434 (453)
Q Consensus 376 ---v~~l~~~~~~v~~~~~~~~~~~lls~s-~~tIrlWD~~t----------G~~l~tL~gh~--~~~V~-----a~s~d 434 (453)
+.+... ..+-....|..+|....+.- +..|-.||+++ ...+..+.-|- +. .. ...||
T Consensus 365 ~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh-~~~~~g~t~~~d 442 (635)
T PRK02888 365 DAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGH-NHASMGETKEAD 442 (635)
T ss_pred ceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccce-eeecCCCcCCCC
Confidence 222221 11112334544443222222 37777799987 23444443331 11 11 23589
Q ss_pred CCEEEEE
Q 046773 435 DRHVAAS 441 (453)
Q Consensus 435 ~~~lasg 441 (453)
|++|++.
T Consensus 443 gk~l~~~ 449 (635)
T PRK02888 443 GKWLVSL 449 (635)
T ss_pred CCEEEEc
Confidence 9988875
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.70 E-value=16 Score=39.26 Aligned_cols=145 Identities=12% Similarity=0.041 Sum_probs=78.6
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCce-EEE-E
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGM-VLG-E 330 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~-~~~-~ 330 (453)
|.++..-..+.=-|+++|++..-..+.++- .+...+..--.-++.+..++++=++..|.-||++-.+. .+. .
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di------~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDI------NMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCc------ceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 445555566666788888854311111110 01111111111233445567877888999999985433 121 2
Q ss_pred eecc--CCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEcCCCee-EEEEEecCCCeeEEEEeeCCCeEEEEeCCeE
Q 046773 331 RGYG--RGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTFEE-VCRFSLRADRNVNVMGCMNQGYALMCVEGVI 406 (453)
Q Consensus 331 ~g~~--~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~~-v~~l~~~~~~v~~~~~~~~~~~lls~s~~tI 406 (453)
.+|. ....-.|+.-.++ .+|.||.+| .||++|- ++.. -..|.+-++.+..+-.+.+|++++......+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~G-------dIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyL 494 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKG-------DIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYL 494 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCC-------cEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEE
Confidence 2221 1222355554444 578889999 9999986 4322 1223333455777777778888876655555
Q ss_pred EEEEC
Q 046773 407 RVWEV 411 (453)
Q Consensus 407 rlWD~ 411 (453)
-|=|+
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 55554
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=87.65 E-value=0.82 Score=49.53 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=26.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecC
Q 046773 154 DLYLACGFADGAVRLFDLTTRLHVRTFRP 182 (453)
Q Consensus 154 ~~~LaSGS~D~TIrlWD~~tg~~~~tl~g 182 (453)
.++|++-+.|+++||||+.|++|++++.-
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 47999999999999999999999888743
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=87.61 E-value=1.2 Score=31.78 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=26.1
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEE
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHV 177 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~ 177 (453)
|.+++|+| ++||.|+.|+.|-|+.+ +++.+
T Consensus 14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 78999998 69999999999999998 66543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.39 E-value=3.5 Score=43.42 Aligned_cols=118 Identities=11% Similarity=0.080 Sum_probs=68.1
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEE-eCCCccccCcceEEEE--EcCCCeeEEEEEecCCCeeEEE
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVV-ENRELENQNRRLAIVR--RVDTFEEVCRFSLRADRNVNVM 390 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~-s~dg~~~~~~~~i~Iw--~~~tg~~v~~l~~~~~~v~~~~ 390 (453)
..|.++|+.+++........+ ......|+|+|.+++.. ..++ ...|| |+.+.+ +..++-....-..-.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g-~~~~P~fspDG~~l~f~~~rdg-------~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps 288 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG-NNGAPAFSPDGSKLAFSSSRDG-------SPDIYLMDLDGKN-LPRLTNGFGINTSPS 288 (425)
T ss_pred ceEEEEeccCCccceeeccCC-ccCCccCCCCCCEEEEEECCCC-------CccEEEEcCCCCc-ceecccCCccccCcc
Confidence 358999999985433322111 23457899999887654 4455 44555 555544 222332221112345
Q ss_pred EeeCCCeEEEEeC--C--eEEEEECCCCeE-EEEecccCCceEEEEecCCCEEEEE
Q 046773 391 GCMNQGYALMCVE--G--VIRVWEVEGGEY-MYSFRERIGEEVIAFVGDDRHVAAS 441 (453)
Q Consensus 391 ~~~~~~~lls~s~--~--tIrlWD~~tG~~-l~tL~gh~~~~V~a~s~d~~~lasg 441 (453)
++|+|++++-.++ | .|-+-|++.+.. ..|+.+-... .-.++|||++|+.-
T Consensus 289 ~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~ 343 (425)
T COG0823 289 WSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFE 343 (425)
T ss_pred CCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEE
Confidence 6789999987776 4 555567776543 3344333222 22678999998754
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=86.23 E-value=13 Score=42.14 Aligned_cols=139 Identities=9% Similarity=0.066 Sum_probs=83.4
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE-------EEcCCceEEEEcCCcEEEEECCCCc
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV-------RVTSHESAVACTSSRVITFDLRNQG 325 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v-------~~s~~~~~vas~d~tIrlWDl~t~~ 325 (453)
|......+.+.--|+++|++..- |..-. ..+|..+ ++.+..++++=++..+-.||++-.+
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~e-----------W~~~~--~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~ 563 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEE-----------WKVHD--DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG 563 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEE-----------eecCC--CcceeEecccccccccCCCceEEEECCCceEEeccCCCC
Confidence 34444556777778888885421 32110 0112222 2345667888888899999998643
Q ss_pred -eEEEEeec--cCCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEcCCCee-EEEEEecCCCeeEEEEeeCCCeEEE
Q 046773 326 -MVLGERGY--GRGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTFEE-VCRFSLRADRNVNVMGCMNQGYALM 400 (453)
Q Consensus 326 -~~~~~~g~--~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~~-v~~l~~~~~~v~~~~~~~~~~~lls 400 (453)
.+....++ .......|++-+++ .+|+||.+| .||++|- .|.. -..|.+-++.|..+-.+.||+++++
T Consensus 564 ~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G-------~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 564 NKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKG-------DIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred CceeeccccccccCCCceEEEecCCceEEEEeCCC-------cEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 22221111 12233456655554 578899999 9999984 3322 1223333455888888889999987
Q ss_pred EeCCeEEEEECC
Q 046773 401 CVEGVIRVWEVE 412 (453)
Q Consensus 401 ~s~~tIrlWD~~ 412 (453)
....-+-|.|+.
T Consensus 636 Tc~tyLlLi~t~ 647 (794)
T PF08553_consen 636 TCKTYLLLIDTL 647 (794)
T ss_pred eecceEEEEEEe
Confidence 777777777763
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=86.12 E-value=17 Score=41.37 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=87.1
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-------CCeEEEEeCCCCEEEEEeecCCcceEE-
Q 046773 157 LACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-------DSQLIFATLDGDIHVAVIDDVANETRT- 228 (453)
Q Consensus 157 LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-------g~~LasgS~D~tIkvWd~~~~g~~~~~- 228 (453)
|......+.|.--|+++|+-+..+.-|... .|..++++ +.....|=.++.+.-||..-.|.....
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-------~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDI-------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCc-------ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 445556688888999999999998865431 24555543 445566777788888886543311111
Q ss_pred -eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce
Q 046773 229 -AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES 307 (453)
Q Consensus 229 -~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~ 307 (453)
.+.-.-..+-..++-+.+|. ||.||.++-|||+|- .|.... -.|.+..+||..|.++.++.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G~----iavgs~~G~IRLyd~-~g~~AK-------------T~lp~lG~pI~~iDvt~DGk 631 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDGY----IAVGSNKGDIRLYDR-LGKRAK-------------TALPGLGDPIIGIDVTADGK 631 (794)
T ss_pred cccccccCCCceEEEecCCce----EEEEeCCCcEEeecc-cchhhh-------------hcCCCCCCCeeEEEecCCCc
Confidence 11100001112356677776 789999999999994 333110 01345668899999887774
Q ss_pred -EEEEcCCcEEEEECC
Q 046773 308 -AVACTSSRVITFDLR 322 (453)
Q Consensus 308 -~vas~d~tIrlWDl~ 322 (453)
++|..+.-+-|.|..
T Consensus 632 wilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 632 WILATCKTYLLLIDTL 647 (794)
T ss_pred EEEEeecceEEEEEEe
Confidence 566556567777753
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=85.37 E-value=51 Score=34.44 Aligned_cols=228 Identities=14% Similarity=0.132 Sum_probs=104.9
Q ss_pred hhhhhcccccCceeeEE-eeCCCCCCCCCCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEe--cCCCCCccccc
Q 046773 116 HRTAQNFRTRRYTHFNL-YFDPSDVDNPDGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTF--RPQHSDRLGQF 191 (453)
Q Consensus 116 ~~~~~nw~~g~~~~~~~-~~~~~gh~~~d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl--~gh~~~~~~~~ 191 (453)
++++.+-+.| +.|.++ +.. ..+ |++|+.|+ -++|-|..|+++-|-|++...-+.+- ..|... ...
T Consensus 66 ~r~~~~~~~g-f~P~~l~~~~----~g~----vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~--~~~ 134 (395)
T PF08596_consen 66 DRAPPSLKEG-FLPLTLLDAK----QGP----VTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLS--KSS 134 (395)
T ss_dssp GG--TT-SEE-EEEEEEE-------S-S----EEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T---SS-
T ss_pred hhCCcccccc-cCchhheecc----CCc----EeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccc--ccc
Confidence 5566666677 455544 321 213 89999987 59999999999999999888876552 110000 001
Q ss_pred cceEEEEEEc-----CC-----eEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEe---eC
Q 046773 192 SRAVSGIIIT-----DS-----QLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAG---LA 258 (453)
Q Consensus 192 s~~V~~i~f~-----g~-----~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSg---S~ 258 (453)
+..|.+|.|. ++ .|..|...|.+.++.+.- .+.|++.+.++.. ..
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp----------------------~~~g~f~v~~~~~~~~~~ 192 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP----------------------SSNGRFSVQFAGATTNHD 192 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-----------------------GGG-EEEEEEEEE--SS
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec----------------------CCCCceEEEEeeccccCC
Confidence 2345666653 21 344555556665554431 1111111111111 11
Q ss_pred CC--eEEEeeCCCCc-EE-ecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeecc
Q 046773 259 GR--AFHIWDRQAEE-VF-VGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYG 334 (453)
Q Consensus 259 D~--tIrvWD~~tg~-~~-~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~ 334 (453)
+. .|...|.++|+ +. .+ ..+.+.... +. -.+.++.++...||+..+-+.++.+... .
T Consensus 193 ~~i~~I~~i~~~~G~~a~At~------------~~~~~l~~g---~~--i~g~vVvvSe~~irv~~~~~~k~~~K~~--~ 253 (395)
T PF08596_consen 193 SPILSIIPINADTGESALATI------------SAMQGLSKG---IS--IPGYVVVVSESDIRVFKPPKSKGAHKSF--D 253 (395)
T ss_dssp ----EEEEEETTT--B-B-BH------------HHHHGGGGT---------EEEEEE-SSEEEEE-TT---EEEEE---S
T ss_pred CceEEEEEEECCCCCcccCch------------hHhhccccC---CC--cCcEEEEEcccceEEEeCCCCcccceee--c
Confidence 11 24445777776 21 10 001111111 00 1246777888899999998877665532 1
Q ss_pred CCeEEE--EEE-----ecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC----CeeEEEEeeCCCeEEEEe
Q 046773 335 RGLYVT--SVD-----VNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD----RNVNVMGCMNQGYALMCV 402 (453)
Q Consensus 335 ~~~~v~--~~~-----~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~----~v~~~~~~~~~~~lls~s 402 (453)
....+. ++- ..+..|+....+| .+++..++.=+++..+..... ......++.+|..+.-.+
T Consensus 254 ~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G-------~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 254 DPFLCSSASVVPTISRNGGYCLVCLFNNG-------SIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp S-EEEEEEEEEEEE-EEEEEEEEEEETTS-------EEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred cccccceEEEEeecccCCceEEEEEECCC-------cEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence 112222 221 2345677778888 999999998777777665321 122344455555444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=85.36 E-value=48 Score=34.17 Aligned_cols=194 Identities=7% Similarity=0.003 Sum_probs=97.1
Q ss_pred EEEeCCCceeeEEEE--eeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcC---
Q 046773 241 IDFTGCSRYWVGLYA--GLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTS--- 313 (453)
Q Consensus 241 v~Fs~dg~~~~~LaS--gS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d--- 313 (453)
..+||||++++.-.+ |+.-.+|+|.|+++|+.+.. .+.. +.. ..+.+.+++ ++-...+
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-------------~i~~-~~~-~~~~W~~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-------------GIEN-PKF-SSVSWSDDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-------------EEEE-EES-EEEEECTTSSEEEEEECSTTT
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-------------cccc-ccc-ceEEEeCCCCEEEEEEeCccc
Confidence 578899987533222 33446799999999985421 0111 111 126676663 3333322
Q ss_pred --------CcEEEEECCCCce--EEEEeeccCC--eEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC----eeEE
Q 046773 314 --------SRVITFDLRNQGM--VLGERGYGRG--LYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF----EEVC 377 (453)
Q Consensus 314 --------~tIrlWDl~t~~~--~~~~~g~~~~--~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg----~~v~ 377 (453)
..|++|.+.+... .....+.... ..-...+.+++.++..+..+.+ ...+.+-+...+ ....
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEEECCCTTTSS-SEE
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEEeccccCCCcCCcE
Confidence 2389999988732 1222222222 2234567888887766655511 024445555553 2344
Q ss_pred EEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCCCeE---EEEecccCCc-eEEEEecCCCEEEE-E-eCC--c
Q 046773 378 RFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEGGEY---MYSFRERIGE-EVIAFVGDDRHVAA-S-CGT--N 445 (453)
Q Consensus 378 ~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG~~---l~tL~gh~~~-~V~a~s~d~~~las-g-~D~--~ 445 (453)
.+..+...+...+.+..+...+.+.. +.|--=++.+... ...+..|... .+..+...+.+|+. - .++ .
T Consensus 271 ~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSR 350 (414)
T ss_dssp EEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEE
T ss_pred EEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccE
Confidence 44444445555555555444444432 4444457776542 2355556553 24567766666554 4 554 5
Q ss_pred EEEEecC
Q 046773 446 IHLWDFG 452 (453)
Q Consensus 446 IklWDl~ 452 (453)
|+++|+.
T Consensus 351 l~v~~~~ 357 (414)
T PF02897_consen 351 LRVYDLD 357 (414)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 6777764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.04 E-value=76 Score=36.12 Aligned_cols=208 Identities=11% Similarity=0.118 Sum_probs=94.2
Q ss_pred eEEEEEEcCCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCC-----eEEEe
Q 046773 194 AVSGIIITDSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGR-----AFHIW 265 (453)
Q Consensus 194 ~V~~i~f~g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~-----tIrvW 265 (453)
.++++..++..+|.|+.|+.|-+ ++. + ++-++.+..++.. .+ ..-+++ ..|+|-..|. .++||
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~--Ln~-s~~~~~~fqa~~~siv~---~L-~~~~~~--~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVI--LNS-SFQLIRGFQAYEQSIVQ---FL-YILNKQ--NFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEE--ecc-cceeeehheecchhhhh---Hh-hcccCc--eEEEEEeecCCCCceEEEEe
Confidence 34555555667888999886543 333 2 1223333222110 00 011111 1255554443 58999
Q ss_pred eCCCCc------EEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEE--cCCcEEEE--ECCCCceEEEEeeccC
Q 046773 266 DRQAEE------VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVAC--TSSRVITF--DLRNQGMVLGERGYGR 335 (453)
Q Consensus 266 D~~tg~------~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas--~d~tIrlW--Dl~t~~~~~~~~g~~~ 335 (453)
|++.-+ ++.-|.+.. +....-+.|+.+++++.+-..+++ .+|.|-+. |+..-+-.+..-.|..
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~-------~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~ 170 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFT-------IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG 170 (933)
T ss_pred cccccCCCCCcceeeeeeeec-------cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC
Confidence 987532 221111100 000012356677777765443443 46766554 2211000011111222
Q ss_pred CeEEEEEEe--cCCE-EEEEeCCCccccCcceEEEEEcCCCee--EEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEE
Q 046773 336 GLYVTSVDV--NAEA-YIVVENRELENQNRRLAIVRRVDTFEE--VCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWE 410 (453)
Q Consensus 336 ~~~v~~~~~--~g~~-l~s~s~dg~~~~~~~~i~Iw~~~tg~~--v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD 410 (453)
..+|+.+.+ ++.. +..++- . .|.++.+. |+. ++.+.-++-.+....+++....++.+++..|..+|
T Consensus 171 ~~pITgL~~~~d~~s~lFv~Tt-~-------~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~ 241 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVATT-E-------QVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD 241 (933)
T ss_pred CCCceeeEEecCCceeEEEEec-c-------eeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence 334555433 3333 222221 1 34555554 322 33343333333444444332335545558899999
Q ss_pred CCCCeEEEEec-ccCCc
Q 046773 411 VEGGEYMYSFR-ERIGE 426 (453)
Q Consensus 411 ~~tG~~l~tL~-gh~~~ 426 (453)
...-+...+|. ||.-.
T Consensus 242 sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 242 SDGRGPCFAFEVGEKKE 258 (933)
T ss_pred CCCcceeeeecCCCeEE
Confidence 98766667887 77544
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.95 E-value=2.4 Score=43.67 Aligned_cols=70 Identities=10% Similarity=0.014 Sum_probs=51.0
Q ss_pred ecCCCeeEEEEeeCCCe-EEEEeC-CeEEEEECCCCeEEEEecccCCceEEEE--ecCCC-EEEEE-eCCcEEEEecC
Q 046773 381 LRADRNVNVMGCMNQGY-ALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAF--VGDDR-HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 381 ~~~~~v~~~~~~~~~~~-lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~--s~d~~-~lasg-~D~~IklWDl~ 452 (453)
.+...++.++++|...- +..++- ++|+|-|++|..+..++..| .. +|++ .-|.. .|-.| ..|+|.|+|+.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~-~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQ-IWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CC-ceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 34444778888886553 444444 99999999999888888767 44 7844 44554 67788 99999999974
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.88 E-value=8.5 Score=42.53 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=46.7
Q ss_pred EEEeeCCCeEEEeeCCCCc---EEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEEc-CCcEEEEECCCCc
Q 046773 253 LYAGLAGRAFHIWDRQAEE---VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVACT-SSRVITFDLRNQG 325 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~---~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas~-d~tIrlWDl~t~~ 325 (453)
+|.|+.|+-+||--+.|.. ...| |..+.....=++|.||...|.-|..+.+.. +..|+ ++-|.+|=+-.|.
T Consensus 29 IAcgG~dGlLKVlKl~t~t~d~~~~g--laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 29 IACGGADGLLKVLKLGTDTTDLNKSG--LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred EEeccccceeEEEEccccCCcccccc--cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc
Confidence 7889999999998887755 1222 212222111257899999988888875443 33333 4789999887664
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=83.42 E-value=51 Score=32.85 Aligned_cols=127 Identities=12% Similarity=0.087 Sum_probs=68.1
Q ss_pred CcEEEEECCCC----ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC--Cee
Q 046773 314 SRVITFDLRNQ----GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD--RNV 387 (453)
Q Consensus 314 ~tIrlWDl~t~----~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~--~v~ 387 (453)
|.|.+.++... ..+....-+.....|.++..-++.++.+ ... .+.|++++..+.+........ .+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~-~g~-------~l~v~~l~~~~~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVA-VGN-------KLYVYDLDNSKTLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEE-ETT-------EEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEe-ecC-------EEEEEEccCcccchhhheecceEEEE
Confidence 67999999873 1222221112234678887767776554 445 889999987763333333222 233
Q ss_pred EEEEeeCCCeEEEEeC-CeEEEE--ECCCCeEEEEecc-cCCceEEE--EecCCCEEEEE-eCCcEEEEec
Q 046773 388 NVMGCMNQGYALMCVE-GVIRVW--EVEGGEYMYSFRE-RIGEEVIA--FVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 388 ~~~~~~~~~~lls~s~-~tIrlW--D~~tG~~l~tL~g-h~~~~V~a--~s~d~~~lasg-~D~~IklWDl 451 (453)
++.. .+.+++.+.. ..|.+. |-+ ++.+..+.. .....+.+ |-+|+..++.+ .++.|.++..
T Consensus 134 sl~~--~~~~I~vgD~~~sv~~~~~~~~-~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 134 SLSV--FKNYILVGDAMKSVSLLRYDEE-NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EEEE--ETTEEEEEESSSSEEEEEEETT-TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEec--cccEEEEEEcccCEEEEEEEcc-CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 3332 3456665544 555555 542 443443322 11222553 44476777777 8999988764
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.09 E-value=3.2 Score=39.71 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=39.3
Q ss_pred CCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 202 DSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 202 g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
++.|+-|+.|+.|.+|+++..|.+.-+...+. +. ...-=|.++--....++..|+.||.|+++-.+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~---e~-i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE---ES-IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhccc---cc-ceeccccccccceeEEeccCCceeeeccccCc
Confidence 56789999999999999885441211111110 00 00011222321135678899999999998877
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=83.05 E-value=7.6 Score=39.56 Aligned_cols=87 Identities=7% Similarity=-0.027 Sum_probs=54.3
Q ss_pred eEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEE-Eecc-------cCCc---------
Q 046773 364 LAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMY-SFRE-------RIGE--------- 426 (453)
Q Consensus 364 ~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~-tL~g-------h~~~--------- 426 (453)
..-|+|+++++....... ...+....++|++.+++-..++.|.+.++.+++..+ |..| -.++
T Consensus 24 ~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~ 102 (353)
T PF00930_consen 24 DYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR 102 (353)
T ss_dssp EEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred eEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence 667888888754332222 334677889999999888888999999998885543 3333 0110
Q ss_pred -eEEEEecCCCEEEEE--eCCcEEEEec
Q 046773 427 -EVIAFVGDDRHVAAS--CGTNIHLWDF 451 (453)
Q Consensus 427 -~V~a~s~d~~~lasg--~D~~IklWDl 451 (453)
...-+|||+++||-. .|..|+.+.+
T Consensus 103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ccceEECCCCCEEEEEEECCcCCceEEe
Confidence 011468999999876 7777776654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.16 E-value=4.4 Score=46.55 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=43.7
Q ss_pred EEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCc-eEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE
Q 046773 198 IIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDG-VLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF 273 (453)
Q Consensus 198 i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~-~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~ 273 (453)
.+.-+-.++.|+.-+.+-.-|+.+ .+.+ .|.+.-.... ..++|+.||+. |+.|-.++-|.+||+.++..+
T Consensus 95 ~a~~~~~ivi~Ts~ghvl~~d~~~-nL~~--~~~ne~v~~~Vtsvafn~dg~~---l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 95 SAIVVVPIVIGTSHGHVLLSDMTG-NLGP--LHQNERVQGPVTSVAFNQDGSL---LLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred eeeeeeeEEEEcCchhhhhhhhhc-ccch--hhcCCccCCcceeeEecCCCce---eccccCCCcEEEEEccCCcce
Confidence 333344566676666666555543 1111 2322111112 25999999996 778889999999999998744
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.84 E-value=0.51 Score=50.99 Aligned_cols=180 Identities=9% Similarity=0.032 Sum_probs=90.8
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC--ceEEEEc-----CCcEEEEECCCCc
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH--ESAVACT-----SSRVITFDLRNQG 325 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~--~~~vas~-----d~tIrlWDl~t~~ 325 (453)
|+.|+.++.|-+-.++... .. +|.+..++..+++++++++- ..++++- |..++|||+.++-
T Consensus 73 lavG~atG~I~l~s~r~~h----------dS--s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~l 140 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPH----------DS--SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLL 140 (783)
T ss_pred hhhccccCceEEeecCCcc----------cc--cceecccccccccccccccccHHHHHhhhhhhcccCCccceeccccc
Confidence 6788888888886664432 00 13344566677888888753 2344443 3579999999861
Q ss_pred e-EEE---E-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee-CCCeEE
Q 046773 326 M-VLG---E-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM-NQGYAL 399 (453)
Q Consensus 326 ~-~~~---~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~-~~~~ll 399 (453)
. .+. + .+...+..+.|..-+-..+.+|.... .++|.|... .+.+...+....++.+...| .+.|+.
T Consensus 141 tvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr-------~~~ifdlRq-s~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 141 TVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR-------SVHIFDLRQ-SLDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred CCCccccccccccccCccccccccCcchhhcccccc-------hhhhhhhhh-hhhhhhhhhhhhcccceecCCCCCcee
Confidence 1 110 1 11111222334332222333344333 555655431 01111112223355566666 677877
Q ss_pred EEeCCeEEEEECCC--CeEEEEecccCCc---eEE--EEecC--CCEEEEE-eCCcEEEEecC
Q 046773 400 MCVEGVIRVWEVEG--GEYMYSFRERIGE---EVI--AFVGD--DRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 400 s~s~~tIrlWD~~t--G~~l~tL~gh~~~---~V~--a~s~d--~~~lasg-~D~~IklWDl~ 452 (453)
+..++.|-+||..- -..++++...... .+. +..|- |...+.. .-++|+++|+.
T Consensus 213 s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 213 SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 66679999999421 1223322211110 133 33453 3333344 66899999875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.98 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.92 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.9 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.9 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.86 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.84 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.83 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.82 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.82 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.81 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.8 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.8 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.8 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.77 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.77 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.75 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.74 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.74 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.74 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.73 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.72 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.72 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.72 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.72 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.69 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.69 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.69 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.68 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.68 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.67 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.65 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.65 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.65 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.58 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.58 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.57 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.56 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.55 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.55 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.52 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.5 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.46 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.42 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.4 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.4 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.39 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.38 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.36 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.36 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.33 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.32 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.32 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.31 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.3 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.22 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.22 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.21 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.16 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.15 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.15 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.15 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.13 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.08 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.07 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.05 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.05 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.04 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.01 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.01 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.0 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.99 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.98 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.96 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.9 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.88 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.87 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.87 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.86 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.86 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.85 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.83 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.82 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.79 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.74 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.71 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.66 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.64 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.59 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.56 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.54 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.51 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.5 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.48 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.45 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.44 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.44 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.41 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 98.37 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.32 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.3 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.3 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 98.26 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.26 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.23 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.17 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.16 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.09 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.08 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.07 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.07 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.04 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.93 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.9 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.89 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.86 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.84 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.82 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.74 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.69 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.61 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.6 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.58 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.49 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.37 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.35 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.32 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.32 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.18 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.1 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.67 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.62 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.6 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.53 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.26 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.23 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 96.15 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.13 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 96.03 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 93.93 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 93.87 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 93.73 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 91.82 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 90.76 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 90.55 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 90.05 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 89.93 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 88.97 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 87.81 | |
| 3f7f_A | 729 | Nucleoporin NUP120; nuclear pore complex, macromol | 87.39 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 87.01 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 86.72 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 86.49 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 85.64 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 83.78 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 82.92 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 82.7 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 82.55 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 81.72 |
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-51 Score=418.17 Aligned_cols=363 Identities=16% Similarity=0.284 Sum_probs=307.9
Q ss_pred cccccCCcchHHHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhhcc-CC-----------CCc
Q 046773 36 AVNEVWPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRRIW-GR-----------TNL 103 (453)
Q Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~~~-~~-----------~~~ 103 (453)
.++..++.||++.||.|+..+|++||+ +++|+.++|||+.|+.+++++.+|+++|++.. .. ...
T Consensus 9 ~~~~~~~~d~~~~lp~e~~~~i~~~l~----~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (445)
T 2ovr_B 9 VIEPQFQRDFISLLPKELALYVLSFLE----PKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 84 (445)
T ss_dssp HHCCCCCCSTTTSSCHHHHHHHHTTSC----HHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCC
T ss_pred hcCccccCChhHHCCHHHHHHHHHhCC----HHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCc
Confidence 355677899999999999999999987 78999999999999999999999999997542 10 122
Q ss_pred CcchhHHHHHHHhhhhhcccccCceeeEEeeCCCCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCC
Q 046773 104 LHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQ 183 (453)
Q Consensus 104 ~~~~Wk~~y~~~~~~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh 183 (453)
...+||..|.+++++++||+.+.+++.... .||. +.+ +.|++|++++||||+.|++|+|||+.++++++++.+|
T Consensus 85 ~~~~wk~~~~~~~~~~~~w~~~~~~~~~~l---~~h~--~~v-~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 158 (445)
T 2ovr_B 85 IHSPWKSAYIRQHRIDTNWRRGELKSPKVL---KGHD--DHV-ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 158 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSCCCCCEEE---ECST--TSC-EEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCC
T ss_pred cCCcHHHHHhhhhhhhhcccCCCcceeEEe---cccC--CCc-EEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCC
Confidence 457899999999999999999999755322 2897 445 5799999999999999999999999999999999987
Q ss_pred CCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCe
Q 046773 184 HSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRA 261 (453)
Q Consensus 184 ~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~t 261 (453)
.. .|.+++|+++.|++|+.|++|++||+++ + +..+.+|...+. .++|+++ .|++|+.|++
T Consensus 159 ~~--------~v~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~----~~~~~~~-----~l~s~s~dg~ 220 (445)
T 2ovr_B 159 TG--------GVWSSQMRDNIIISGSTDRTLKVWNAET-GECIHTLYGHTSTVR----CMHLHEK-----RVVSGSRDAT 220 (445)
T ss_dssp SS--------CEEEEEEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEE----EEEEETT-----EEEEEETTSE
T ss_pred CC--------CEEEEEecCCEEEEEeCCCeEEEEECCc-CcEEEEECCCCCcEE----EEEecCC-----EEEEEeCCCE
Confidence 64 6888999999999999999999999987 4 445556665543 4677643 3889999999
Q ss_pred EEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEE
Q 046773 262 FHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTS 341 (453)
Q Consensus 262 IrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~ 341 (453)
|++||+++++.+ ..+.+|..+|.++.++++.+++++.|++|++||+++++++....+|. ..+.+
T Consensus 221 i~~wd~~~~~~~--------------~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~ 284 (445)
T 2ovr_B 221 LRVWDIETGQCL--------------HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYS 284 (445)
T ss_dssp EEEEESSSCCEE--------------EEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS--SCEEE
T ss_pred EEEEECCCCcEE--------------EEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCC--CceEE
Confidence 999999998843 34668889999999988778888889999999999988777666554 45678
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
+.+++..+++++.|+ +++|||+.+++++..+..+...+..+. +++.++++++. ++|++||+.+++++.++
T Consensus 285 ~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 355 (445)
T 2ovr_B 285 LQFDGIHVVSGSLDT-------SIRVWDVETGNCIHTLTGHQSLTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTL 355 (445)
T ss_dssp EEECSSEEEEEETTS-------CEEEEETTTCCEEEEECCCCSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEECCCEEEEEeCCC-------eEEEEECCCCCEEEEEcCCcccEEEEE--EeCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 888999999999999 999999999999999888876666554 45778888876 99999999999999999
Q ss_pred cc---cCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 421 RE---RIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 421 ~g---h~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+ |... |.++++++++|+++ .|++|+|||+.
T Consensus 356 ~~~~~~~~~-v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 356 QGPNKHQSA-VTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp CSTTSCSSC-EEEEEECSSEEEEEETTSEEEEEETT
T ss_pred ccCCCCCCC-EEEEEECCCEEEEEeCCCeEEEEECC
Confidence 87 7777 99999999999999 99999999975
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-51 Score=421.89 Aligned_cols=366 Identities=17% Similarity=0.245 Sum_probs=302.9
Q ss_pred ccccCCcchHHHHHHH----HHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhhccC-------------
Q 046773 37 VNEVWPEPFVEALAAQ----VAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRRIWG------------- 99 (453)
Q Consensus 37 ~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~~~~------------- 99 (453)
++..+++||++.||.| ++.+|++||+ +++|++++|||++|+.+++++.+|+++|.+.+.
T Consensus 2 ~~~~~~~d~~~~lp~e~~~~~~~~i~~~l~----~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 77 (435)
T 1p22_A 2 PAIMLQRDFITALPARGLDHIAENILSYLD----AKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRG 77 (435)
T ss_dssp CCCCSCCCHHHHTGGGTCHHHHHHHHTTCC----HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSS
T ss_pred CChhhhcChHHHCCcchHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccc
Confidence 4567899999999999 9999999987 789999999999999999999999999976421
Q ss_pred --C---------CCcCcchh-HHHHH----HHhhhhhcccccCceeeEEeeCCCCCCCCCCeEEEEEEecCCEEEEEeCC
Q 046773 100 --R---------TNLLHATW-RDEYI----YRHRTAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSDLYLACGFAD 163 (453)
Q Consensus 100 --~---------~~~~~~~W-k~~y~----~~~~~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~~~LaSGS~D 163 (453)
. ...+..+| +..|. ...++++||+.+++....+... .+|.++ |+|++|++++||+|+.|
T Consensus 78 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~----v~~~~~d~~~l~~g~~d 152 (435)
T 1p22_A 78 WGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCR-SETSKG----VYCLQYDDQKIVSGLRD 152 (435)
T ss_dssp GGGGCC---------CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECC-CSSCCC----EEEEECCSSEEEEEESS
T ss_pred hhhhhhccCCCCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecc-cCCCCc----EEEEEECCCEEEEEeCC
Confidence 0 00112233 33333 2346899999999987765532 356533 88999999999999999
Q ss_pred CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEE
Q 046773 164 GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLI 241 (453)
Q Consensus 164 ~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v 241 (453)
++|+|||+.++++++++.+|.. .|.+++|+++.|++|+.|++|+|||+.+ + +.++..|...+. .+
T Consensus 153 g~i~iwd~~~~~~~~~~~~h~~--------~v~~l~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~----~l 219 (435)
T 1p22_A 153 NTIKIWDKNTLECKRILTGHTG--------SVLCLQYDERVIITGSSDSTVRVWDVNT-GEMLNTLIHHCEAVL----HL 219 (435)
T ss_dssp SCEEEEESSSCCEEEEECCCSS--------CEEEEECCSSEEEEEETTSCEEEEESSS-CCEEEEECCCCSCEE----EE
T ss_pred CeEEEEeCCCCeEEEEEcCCCC--------cEEEEEECCCEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCcEE----EE
Confidence 9999999999999999998764 6888999999999999999999999987 4 455556665543 47
Q ss_pred EEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEEC
Q 046773 242 DFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDL 321 (453)
Q Consensus 242 ~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl 321 (453)
+|+++ .|++|+.|++|+|||+++++... ....+.+|...|.++.++++.+++++.|++|++||+
T Consensus 220 ~~~~~-----~l~s~s~dg~i~vwd~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~ 283 (435)
T 1p22_A 220 RFNNG-----MMVTCSKDRSIAVWDMASPTDIT-----------LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNT 283 (435)
T ss_dssp ECCTT-----EEEEEETTSCEEEEECSSSSCCE-----------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred EEcCC-----EEEEeeCCCcEEEEeCCCCCCce-----------eeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 78754 48999999999999999876210 013467888999999998887888889999999999
Q ss_pred CCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE
Q 046773 322 RNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 322 ~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~ 401 (453)
++++++....+|.. .+.++.++++.+++++.|+ +|+|||+.+++++.++..|...+..+.+ ++.+++++
T Consensus 284 ~~~~~~~~~~~~~~--~v~~~~~~~~~l~~g~~dg-------~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 284 STCEFVRTLNGHKR--GIACLQYRDRLVVSGSSDN-------TIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp TTCCEEEEEECCSS--CEEEEEEETTEEEEEETTS-------CEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred CcCcEEEEEcCCCC--cEEEEEeCCCEEEEEeCCC-------eEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 99988777766654 4678888899999999999 9999999999999999988888888776 77888888
Q ss_pred eC-CeEEEEECCCCe---------EEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 402 VE-GVIRVWEVEGGE---------YMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 402 s~-~tIrlWD~~tG~---------~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+. ++|+|||+.+++ ++.++.+|.+. |.++++|+++|+++ .|++|+|||+.
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-VFRLQFDEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC-CCCEEECSSCEEECCSSSEEEEEC--
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCC-eEEEEeCCCEEEEEeCCCEEEEEECC
Confidence 77 999999998877 99999999998 99888899999999 99999999984
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=409.28 Aligned_cols=382 Identities=13% Similarity=0.202 Sum_probs=306.9
Q ss_pred ccccCCcchHHHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCC-chhHHHhhhhccC----------------
Q 046773 37 VNEVWPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRS-DLLWHRLTRRIWG---------------- 99 (453)
Q Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~-~~~w~~~~~~~~~---------------- 99 (453)
+++.+++||++.||.|++++|++||+ +++|++++|||+.|+.++++ +.+|+++|.+..-
T Consensus 6 ~~~~~~~d~~~~lp~~~~~~i~~~l~----~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (464)
T 3v7d_B 6 IKDNLKRDLITSLPFEISLKIFNYLQ----FEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQK 81 (464)
T ss_dssp ---CCCCCHHHHSCHHHHHHHHTTSC----HHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHH
T ss_pred cCcccccCChHHCCHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhcc
Confidence 56778999999999999999999987 78999999999999999998 8999999965320
Q ss_pred -CCCcCcchhHHHHHHHhhhhhcccccCceeeEEeeCCCCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEE
Q 046773 100 -RTNLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVR 178 (453)
Q Consensus 100 -~~~~~~~~Wk~~y~~~~~~~~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~ 178 (453)
.......+|+..|.++....+||+.+.+.+....+. ||. +.+ +.|++|++++||||+.|++|+|||+.++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~--~h~--~~v-~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~ 156 (464)
T 3v7d_B 82 YPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLR--GHM--TSV-ITCLQFEDNYVITGADDKMIRVYDSINKKFLL 156 (464)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEE--CCS--SSC-EEEEEEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCcccchhhHHHHHHhhhhHhhhcCCCcCcceEEEc--CCC--CCc-EEEEEECCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 011234579999999999999999998876644443 897 445 57999999999999999999999999999999
Q ss_pred EecCCCCCccccccceEEEEEEcC-CeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEe--CCCceeeEE
Q 046773 179 TFRPQHSDRLGQFSRAVSGIIITD-SQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFT--GCSRYWVGL 253 (453)
Q Consensus 179 tl~gh~~~~~~~~s~~V~~i~f~g-~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs--~dg~~~~~L 253 (453)
++.+|.. .|.+++|++ ..|++|+.|++|+|||+++ + +..+.+|...+. .++|+ +++++ |
T Consensus 157 ~~~~h~~--------~V~~l~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~h~~~v~----~l~~~~~~~~~~---l 220 (464)
T 3v7d_B 157 QLSGHDG--------GVWALKYAHGGILVSGSTDRTVRVWDIKK-GCCTHVFEGHNSTVR----CLDIVEYKNIKY---I 220 (464)
T ss_dssp EECCCSS--------CEEEEEECSTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEE----EEEEEESSSCEE---E
T ss_pred EEeCCCc--------CEEEEEEcCCCEEEEEeCCCCEEEEECCC-CcEEEEECCCCCccE----EEEEecCCCCCE---E
Confidence 9998765 688899874 4899999999999999987 5 455556666553 36777 56665 8
Q ss_pred EEeeCCCeEEEeeCCCCcEEe--cccc-------cCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCC
Q 046773 254 YAGLAGRAFHIWDRQAEEVFV--GGDL-------TDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQ 324 (453)
Q Consensus 254 aSgS~D~tIrvWD~~tg~~~~--g~~l-------~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~ 324 (453)
++|+.|++|++||+++++... +... ...........+.+|...|.++..+++.+++++.|++|++||++++
T Consensus 221 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~ 300 (464)
T 3v7d_B 221 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM 300 (464)
T ss_dssp EEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred EEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 899999999999999876211 0000 0000011124678899999999888877888888999999999999
Q ss_pred ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-
Q 046773 325 GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE- 403 (453)
Q Consensus 325 ~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~- 403 (453)
+++....+|...+...+++++++.+++++.|+ +|+|||+.+++++.++..|...+..+.++ +.++++++.
T Consensus 301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg-------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d 371 (464)
T 3v7d_B 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDT-------TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAAD 371 (464)
T ss_dssp EEEEEECCCSSCEEEEEEETTTTEEEEEETTS-------CEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETT
T ss_pred cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCC
Confidence 88777777877777777888899999999999 99999999999999999888888887765 678888877
Q ss_pred CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEEeCCcEEEEecC
Q 046773 404 GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 404 ~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg~D~~IklWDl~ 452 (453)
++|++||+.+++....+.......+.+|+|++++|+++.|++|+|||+.
T Consensus 372 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 372 GSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR 420 (464)
T ss_dssp SEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETT
T ss_pred CcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECC
Confidence 9999999999988777642222225589999999999889999999975
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=357.06 Aligned_cols=273 Identities=14% Similarity=0.168 Sum_probs=236.2
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||..+ |+|++|++ .+|||||.|++|+|||+.+++++++|.+|.. .|.+++|+ +..|++||.|++
T Consensus 106 gh~~~----V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~--------~V~~v~~~~~~~~l~sgs~D~~ 173 (410)
T 1vyh_C 106 GHRSP----VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD--------SVQDISFDHSGKLLASCSADMT 173 (410)
T ss_dssp CCSSC----EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS--------CEEEEEECTTSSEEEEEETTSC
T ss_pred ccCCc----EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCC--------cEEEEEEcCCCCEEEEEeCCCe
Confidence 89865 89999987 5999999999999999999999999998764 68888885 678999999999
Q ss_pred EEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 214 IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
|+|||+.+.. +.++.+|...|. .++|+|+|++ |+|||.|++|+|||+++++++ .++.+
T Consensus 174 i~iwd~~~~~~~~~~~~h~~~V~----~v~~~p~~~~---l~s~s~D~~i~~wd~~~~~~~--------------~~~~~ 232 (410)
T 1vyh_C 174 IKLWDFQGFECIRTMHGHDHNVS----SVSIMPNGDH---IVSASRDKTIKMWEVQTGYCV--------------KTFTG 232 (410)
T ss_dssp CCEEETTSSCEEECCCCCSSCEE----EEEECSSSSE---EEEEETTSEEEEEETTTCCEE--------------EEEEC
T ss_pred EEEEeCCCCceeEEEcCCCCCEE----EEEEeCCCCE---EEEEeCCCeEEEEECCCCcEE--------------EEEeC
Confidence 9999998722 455566766554 5899999986 889999999999999998854 35678
Q ss_pred eccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEec--------------------CCEEE
Q 046773 293 FTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN--------------------AEAYI 350 (453)
Q Consensus 293 h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~--------------------g~~l~ 350 (453)
|..+|.++.+++++. ++++.|++|++||++++++...+.+|...+...+|+|+ +..++
T Consensus 233 h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 312 (410)
T 1vyh_C 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 312 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE
Confidence 899999999998774 45567899999999999887777777666555555554 55799
Q ss_pred EEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE
Q 046773 351 VVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI 429 (453)
Q Consensus 351 s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~ 429 (453)
+++.|+ +|+|||+.+++++.++..|.+.|..+.+++++.++++++. ++|+|||+.+++++.++.+|.+. |+
T Consensus 313 sgs~D~-------~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~-v~ 384 (410)
T 1vyh_C 313 SGSRDK-------TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-VT 384 (410)
T ss_dssp EEETTS-------EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC-EE
T ss_pred EEeCCC-------eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc-EE
Confidence 999999 9999999999999999999999999999999999999887 99999999999999999999998 88
Q ss_pred --EEecCCCEEEEE-eCCcEEEEec
Q 046773 430 --AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 430 --a~s~d~~~lasg-~D~~IklWDl 451 (453)
+|+|++.+|+|| .|++|+|||+
T Consensus 385 ~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 385 SLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 677999999999 9999999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=335.32 Aligned_cols=275 Identities=13% Similarity=0.175 Sum_probs=231.8
Q ss_pred CCCCCCCCeEEEEEEecC------CEEEEEeCCCcEEEEECCCCeE--EEEecCCCCCccccccceEEEEEEc--CCeEE
Q 046773 137 SDVDNPDGLTCRCLTLSD------LYLACGFADGAVRLFDLTTRLH--VRTFRPQHSDRLGQFSRAVSGIIIT--DSQLI 206 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~------~~LaSGS~D~TIrlWD~~tg~~--~~tl~gh~~~~~~~~s~~V~~i~f~--g~~La 206 (453)
.+|.++ |+|++|++ ++|||||.|++|||||+.++++ ..+|.||.. .|.+++|+ +..++
T Consensus 29 ~~H~~~----V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~--------~v~~~~~~~~~~~l~ 96 (321)
T 3ow8_A 29 QAHDDA----IWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL--------GVVSVDISHTLPIAA 96 (321)
T ss_dssp TSSSSC----EEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSS--------CEEEEEECSSSSEEE
T ss_pred ccCCCc----EEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCC--------CEEEEEECCCCCEEE
Confidence 589855 88999964 4899999999999999988864 557888764 57778875 56899
Q ss_pred EEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 207 FATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 207 sgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
+||.|++|+|||+.+ + +..+..|...+. .++|+|+|++ |++|+.|++|+|||+++++..
T Consensus 97 s~s~D~~i~lWd~~~-~~~~~~~~~~~~~~~----~~~~spdg~~---l~~g~~dg~v~i~~~~~~~~~----------- 157 (321)
T 3ow8_A 97 SSSLDAHIRLWDLEN-GKQIKSIDAGPVDAW----TLAFSPDSQY---LATGTHVGKVNIFGVESGKKE----------- 157 (321)
T ss_dssp EEETTSEEEEEETTT-TEEEEEEECCTTCCC----CEEECTTSSE---EEEECTTSEEEEEETTTCSEE-----------
T ss_pred EEeCCCcEEEEECCC-CCEEEEEeCCCccEE----EEEECCCCCE---EEEEcCCCcEEEEEcCCCcee-----------
Confidence 999999999999987 5 333333433322 4899999996 889999999999999998732
Q ss_pred eeeeeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
..+..|...|.+++|+|++. ++++.|++|+|||+++++++.++.+|...+...+|+|++..+++++.|+
T Consensus 158 ---~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg------ 228 (321)
T 3ow8_A 158 ---YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG------ 228 (321)
T ss_dssp ---EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS------
T ss_pred ---EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC------
Confidence 23456778899999998874 4556789999999999988777777776666677888899999999999
Q ss_pred ceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEE
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVA 439 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~la 439 (453)
+|+|||+.+++++.++..|...+..+.++|++.++++++. ++|+|||+.++++++++.+|.+. |+ +|+||+++|+
T Consensus 229 -~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~-v~~v~~s~~g~~l~ 306 (321)
T 3ow8_A 229 -YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ-VWGVKYNGNGSKIV 306 (321)
T ss_dssp -CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEE
T ss_pred -eEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc-EEEEEECCCCCEEE
Confidence 9999999999999999999988999999999999998887 99999999999999999999998 88 6789999999
Q ss_pred EE-eCCcEEEEecCC
Q 046773 440 AS-CGTNIHLWDFGA 453 (453)
Q Consensus 440 sg-~D~~IklWDl~~ 453 (453)
++ .|++|+|||+.+
T Consensus 307 s~~~d~~i~vwd~p~ 321 (321)
T 3ow8_A 307 SVGDDQEIHIYDCPI 321 (321)
T ss_dssp EEETTCCEEEEECC-
T ss_pred EEeCCCeEEEEeCCC
Confidence 99 999999999853
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-41 Score=327.95 Aligned_cols=274 Identities=14% Similarity=0.159 Sum_probs=229.2
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~t 213 (453)
||.++ |++++|+| ++||||+.|++|||||++++++++++.+|.. .|.+++| +++.|++||.|++
T Consensus 11 ~h~~~----V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~s~s~d~~ 78 (304)
T 2ynn_A 11 NRSDR----VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET--------PVRAGKFIARKNWIIVGSDDFR 78 (304)
T ss_dssp EECSC----EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------CEEEEEEEGGGTEEEEEETTSE
T ss_pred CCCCc----eEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCC--------cEEEEEEeCCCCEEEEECCCCE
Confidence 78844 89999986 6999999999999999999999999998654 4677766 4788999999999
Q ss_pred EEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 214 IHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 214 IkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
|+|||+++ + +..+.+|.+.|. .|+|+|++++ |+|||.|++|+|||++++..+. .++.
T Consensus 79 i~vwd~~~-~~~~~~~~~h~~~v~----~~~~~~~~~~---l~sgs~D~~v~lWd~~~~~~~~-------------~~~~ 137 (304)
T 2ynn_A 79 IRVFNYNT-GEKVVDFEAHPDYIR----SIAVHPTKPY---VLSGSDDLTVKLWNWENNWALE-------------QTFE 137 (304)
T ss_dssp EEEEETTT-CCEEEEEECCSSCEE----EEEECSSSSE---EEEEETTSCEEEEEGGGTTEEE-------------EEEC
T ss_pred EEEEECCC-CcEEEEEeCCCCcEE----EEEEcCCCCE---EEEECCCCeEEEEECCCCcchh-------------hhhc
Confidence 99999987 5 456677776654 5899999986 8899999999999998875321 3567
Q ss_pred eeccceeEEEEcCC-c--eEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEe--cCCEEEEEeCCCccccCcceE
Q 046773 292 EFTEFVGRVRVTSH-E--SAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDV--NAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 292 ~h~~~v~~v~~s~~-~--~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~--~g~~l~s~s~dg~~~~~~~~i 365 (453)
+|..+|.+++|+|. + +++++.|++|+|||++++.+.... .+|...+...++.+ ++..+++++.|+ +|
T Consensus 138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-------~i 210 (304)
T 2ynn_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-------TI 210 (304)
T ss_dssp CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS-------EE
T ss_pred ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC-------eE
Confidence 89999999999983 3 566678899999999987655444 44545555556665 456899999999 99
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCC--EEEE
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDR--HVAA 440 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~--~las 440 (453)
+|||+.+++++.++..|...+..+.++|++.++++++. ++|||||+.+++++++|..|.+. ++ ++.|++. +||+
T Consensus 211 ~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~as 289 (304)
T 2ynn_A 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER-SWCIATHPTGRKNYIAS 289 (304)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSS-EEEEEECTTCGGGCEEE
T ss_pred EEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCcc-EEEEEECCCCCceEEEE
Confidence 99999999999999999999999999999999998887 99999999999999999999888 88 4567775 5888
Q ss_pred EeCCcEEEEecC
Q 046773 441 SCGTNIHLWDFG 452 (453)
Q Consensus 441 g~D~~IklWDl~ 452 (453)
|.|..+.+|+++
T Consensus 290 g~~~g~~~~~~~ 301 (304)
T 2ynn_A 290 GFDNGFTVLSLG 301 (304)
T ss_dssp EETTEEEEEECC
T ss_pred ecCCceEEEEec
Confidence 877778899875
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-40 Score=325.69 Aligned_cols=272 Identities=13% Similarity=0.103 Sum_probs=230.2
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~ 212 (453)
.||.++ |+|++|++ ++|||||.|++|+|||+.+++++.++..|.. .|.+++|+ ++.|++|+.|+
T Consensus 52 ~gH~~~----v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 52 RGHLAK----IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS--------WVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CCCSSC----EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSS--------CEEEEEECTTSSEEEEEETTC
T ss_pred cCCCCc----eEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCc--------cEEEEEECCCCCEEEEEeCCC
Confidence 389855 88999986 5999999999999999999999999987654 57777775 67899999999
Q ss_pred CEEEEEeecCC-----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee
Q 046773 213 DIHVAVIDDVA-----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW 287 (453)
Q Consensus 213 tIkvWd~~~~g-----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w 287 (453)
+|++|++.+.. ...+.+|.+.+. .+.|+++++ |++++.|++|+|||+++++..
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~----~~~~~~~~~----l~s~s~d~~i~~wd~~~~~~~-------------- 177 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSRELAGHTGYLS----CCRFLDDNQ----IVTSSGDTTCALWDIETGQQT-------------- 177 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEEECCSSCEE----EEEEEETTE----EEEEETTSCEEEEETTTTEEE--------------
T ss_pred eEEEEECccCCCcceeEEEecCCCccEE----EEEECCCCc----EEEEECCCcEEEEECCCCcEE--------------
Confidence 99999987621 133445665543 478999886 689999999999999998843
Q ss_pred eeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 288 RMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
.++.+|...|.+++|+|++. ++++.|++|++||++++.++.++.+|...+...+|+|+++.+++++.|+ ++
T Consensus 178 ~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~-------~v 250 (340)
T 1got_B 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA-------TC 250 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS-------CE
T ss_pred EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC-------cE
Confidence 34678899999999998763 4556789999999999988877778877777777888899999999999 99
Q ss_pred EEEEcCCCeeEEEEEecC--CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEE
Q 046773 366 IVRRVDTFEEVCRFSLRA--DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAA 440 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~--~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~las 440 (453)
+|||+.+++++..+.... ..+..+.++|++.++++++. ++|+|||+.+++++.+|.+|.+. |. +|+||+++|+|
T Consensus 251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~s~dg~~l~s 329 (340)
T 1got_B 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVAT 329 (340)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-EEEEEECTTSSCEEE
T ss_pred EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCc-EEEEEEcCCCCEEEE
Confidence 999999998877765332 35888999999999998887 99999999999999999999998 88 67899999999
Q ss_pred E-eCCcEEEEe
Q 046773 441 S-CGTNIHLWD 450 (453)
Q Consensus 441 g-~D~~IklWD 450 (453)
| .|++|+|||
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 9 999999997
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=318.16 Aligned_cols=272 Identities=15% Similarity=0.200 Sum_probs=226.6
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCC-----CeEEEEecCCCCCccccccceEEEEEEc--CCeEE
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTT-----RLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLI 206 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~t-----g~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~La 206 (453)
.||..+ |++++|++ ++|||||.|++|||||+.+ +.++++|.+|.. .|.+++|+ ++.|+
T Consensus 14 ~gH~~~----V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~--------~v~~~~~s~dg~~l~ 81 (319)
T 3frx_A 14 EGHNGW----VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH--------IVQDCTLTADGAYAL 81 (319)
T ss_dssp CCCSSC----EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS--------CEEEEEECTTSSEEE
T ss_pred ccccce----EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcc--------cEEEEEECCCCCEEE
Confidence 499855 89999975 6899999999999999864 456889998764 57778775 67899
Q ss_pred EEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 207 FATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 207 sgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
+||.|++|+|||+.+ + +..+.+|...|. .++|+|++++ |+|||.|++|+|||++....
T Consensus 82 s~s~D~~v~~wd~~~-~~~~~~~~~h~~~v~----~~~~~~~~~~---l~s~s~D~~i~vwd~~~~~~------------ 141 (319)
T 3frx_A 82 SASWDKTLRLWDVAT-GETYQRFVGHKSDVM----SVDIDKKASM---IISGSRDKTIKVWTIKGQCL------------ 141 (319)
T ss_dssp EEETTSEEEEEETTT-TEEEEEEECCSSCEE----EEEECTTSCE---EEEEETTSCEEEEETTSCEE------------
T ss_pred EEeCCCEEEEEECCC-CCeeEEEccCCCcEE----EEEEcCCCCE---EEEEeCCCeEEEEECCCCeE------------
Confidence 999999999999987 5 456677877664 5899999986 88999999999999975442
Q ss_pred eeeeeeeeeccceeEEEEcCCc--------eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCC
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHE--------SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRE 356 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~--------~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg 356 (453)
.++.+|..+|.++++.|.. +++++.|++|++||++++++...+.+|...+...+++|+++.+++++.|+
T Consensus 142 ---~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 218 (319)
T 3frx_A 142 ---ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218 (319)
T ss_dssp ---EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred ---EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 3466888999999998742 46667889999999999877666677877777777888899999999999
Q ss_pred ccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecc--------cCCceE
Q 046773 357 LENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRE--------RIGEEV 428 (453)
Q Consensus 357 ~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~g--------h~~~~V 428 (453)
+|+|||+.+++++.++..+ +.+..+.|+|++.+++++++..|++|++.++.++..+.. |... |
T Consensus 219 -------~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~-v 289 (319)
T 3frx_A 219 -------EIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH-A 289 (319)
T ss_dssp -------EEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCC-E
T ss_pred -------eEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcc-e
Confidence 9999999999999888754 568999999998888777778899999999988887753 3344 5
Q ss_pred E--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 429 I--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 429 ~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
. +|+|||++|++| .|++|+|||+.
T Consensus 290 ~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 290 VSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred eEEEECCCCCEEEEeecCceEEEEEEe
Confidence 5 788999999999 99999999974
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=323.38 Aligned_cols=272 Identities=12% Similarity=0.133 Sum_probs=228.6
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~t 213 (453)
||.++ |+|++|++ ++|||||.|++|+|||+.++++.+++..|.. .|.+++| ++..|++|+.|++
T Consensus 62 gH~~~----V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~--------~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 62 GHGNK----VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT--------WVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp CCSSC----EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS--------CCCEEEECTTSSEEEEESTTSE
T ss_pred CCCCe----EEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCC--------CEEEEEECCCCCEEEEeeCCCC
Confidence 89855 89999986 6999999999999999999999999987643 4555666 4779999999999
Q ss_pred EEEEEeecC---C----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceee
Q 046773 214 IHVAVIDDV---A----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMG 286 (453)
Q Consensus 214 IkvWd~~~~---g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~ 286 (453)
|++|++... + ...+..|.+.+. .++|+|+++. |++||.|++|+|||+++++.+
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~----~~~~~~~~~~---l~t~s~D~~v~lwd~~~~~~~------------- 189 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVAMHTNYLS----ACSFTNSDMQ---ILTASGDGTCALWDVESGQLL------------- 189 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEEECSSCEE----EEEECSSSSE---EEEEETTSEEEEEETTTCCEE-------------
T ss_pred EEEEEEeccccccccccceeeeccCCcEE----EEEEeCCCCE---EEEEeCCCcEEEEeCCCCeEE-------------
Confidence 999998641 1 244556766553 4899999986 889999999999999999853
Q ss_pred eeeeeeeccceeEEEEcCC----ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 287 WRMLTEFTEFVGRVRVTSH----ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 287 w~~l~~h~~~v~~v~~s~~----~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
+++.+|...|.++.++|. .+++++.|++|++||+++++++..+.+|...+...+|+|+++.+++++.|+
T Consensus 190 -~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~------ 262 (354)
T 2pbi_B 190 -QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA------ 262 (354)
T ss_dssp -EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS------
T ss_pred -EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCC------
Confidence 356788899999999763 356667789999999999998877777777666667788899999999999
Q ss_pred ceEEEEEcCCCeeEEEEEecC--CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCE
Q 046773 363 RLAIVRRVDTFEEVCRFSLRA--DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRH 437 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~--~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~ 437 (453)
+++|||+.+++++..+..+. ..+..+.+++++.++++++. ++|+|||+.+++++.+|.+|.+. |+ +|+||+++
T Consensus 263 -~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~-v~~l~~spdg~~ 340 (354)
T 2pbi_B 263 -TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR-VSTLRVSPDGTA 340 (354)
T ss_dssp -CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC-EEEEEECTTSSC
T ss_pred -eEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCc-EEEEEECCCCCE
Confidence 99999999988777665432 24678899999999988887 99999999999999999999998 87 67899999
Q ss_pred EEEE-eCCcEEEEe
Q 046773 438 VAAS-CGTNIHLWD 450 (453)
Q Consensus 438 lasg-~D~~IklWD 450 (453)
|+|+ .|++|+||+
T Consensus 341 l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 341 FCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEecC
Confidence 9999 999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=328.22 Aligned_cols=281 Identities=12% Similarity=0.145 Sum_probs=226.2
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~ 212 (453)
.||..+ |+|++|++ ++|||||.|++|||||+.++++++++.+|.. .|.+++| +++.|++|+.|+
T Consensus 63 ~gH~~~----V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--------~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 63 QGHSGK----VYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--------WVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp CCCSSC----EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--------TCCCCEECTTSSEEEECCSSS
T ss_pred cccccE----EEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC--------CEEEEEECCCCCEEEEeeCCC
Confidence 389855 89999986 5899999999999999999999999998764 3444555 578999999999
Q ss_pred CEEEEEeecC----C----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 213 DIHVAVIDDV----A----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 213 tIkvWd~~~~----g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
+|+|||+.+. + ..++.+|.+.+. .+.|.|++.. .|+|||.|++|+|||+++++.+.--.
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~----~~~~~~~~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~------- 197 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVLTGHKGYAS----SCQYVPDQET--RLITGSGDQTCVLWDVTTGQRISIFG------- 197 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBCCCCSSCCC----CCBCCSSSSS--CEEEECTTSCEEEECTTTCCEEEEEC-------
T ss_pred cEEEEECCCCccccCCccceeeccCCCcceE----EEEEecCCCC--EEEEECCCCcEEEEEcCCCcEEEEee-------
Confidence 9999998641 1 244566766553 3688887543 38899999999999999998431000
Q ss_pred eeeeeeeeeccceeEEEEcC-C--ceEEEEcCCcEEEEECCC-CceEEEEeeccCCeEEEEEEecCCEEEEEeCCCcccc
Q 046773 285 MGWRMLTEFTEFVGRVRVTS-H--ESAVACTSSRVITFDLRN-QGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQ 360 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~-~--~~~vas~d~tIrlWDl~t-~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~ 360 (453)
-....+|...|.++.+++ + .+++++.|++|+|||++. +.++..+.+|...+...+|+|++..+++++.|+
T Consensus 198 --~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~---- 271 (380)
T 3iz6_a 198 --SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG---- 271 (380)
T ss_dssp --CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS----
T ss_pred --cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC----
Confidence 011257888999999965 3 356667789999999984 455555677777666677888899999999999
Q ss_pred CcceEEEEEcCCCeeEEEEEecCC-------CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe----cccCCceE
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLRAD-------RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF----RERIGEEV 428 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~~~-------~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL----~gh~~~~V 428 (453)
+++|||+.+++++..+..++. .+..+.+++++.++++++. ++|+|||+.+++++..+ .+|.+. |
T Consensus 272 ---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~-v 347 (380)
T 3iz6_a 272 ---TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR-I 347 (380)
T ss_dssp ---CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC-C
T ss_pred ---eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCc-e
Confidence 999999999999888765542 2778999999999998887 99999999999999888 688888 7
Q ss_pred E--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 429 I--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 429 ~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+ +|+||+++|+|| .|++|+|||+.
T Consensus 348 ~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 348 SCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred EEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 7 678999999999 99999999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=317.75 Aligned_cols=275 Identities=10% Similarity=0.048 Sum_probs=206.1
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccc---cccceEEEEEEcC-CeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLG---QFSRAVSGIIITD-SQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~---~~s~~V~~i~f~g-~~LasgS~D~tIkvWd~~ 220 (453)
|.+++|++ .+|+++| |.++|+||...........++...... .....|.+++|++ ..|++||.|++|+|||++
T Consensus 33 v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~ 111 (344)
T 4gqb_B 33 LEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELD 111 (344)
T ss_dssp EEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEecc
Confidence 78999986 5888888 889999984321100000111100000 0012588899874 579999999999999998
Q ss_pred cCC-cce----EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecc
Q 046773 221 DVA-NET----RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 221 ~~g-~~~----~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
+.. ... +.+|.+.|. .|+|+|||++ |+|||.|++|+|||+++++.+ +++.+|.+
T Consensus 112 ~~~~~~~~~~~~~~H~~~V~----~v~~spdg~~---l~sgs~d~~i~iwd~~~~~~~--------------~~~~~h~~ 170 (344)
T 4gqb_B 112 ENETLIVSKFCKYEHDDIVS----TVSVLSSGTQ---AVSGSKDICIKVWDLAQQVVL--------------SSYRAHAA 170 (344)
T ss_dssp TTSSCEEEEEEEECCSSCEE----EEEECTTSSE---EEEEETTSCEEEEETTTTEEE--------------EEECCCSS
T ss_pred CCCceeEeeccccCCCCCEE----EEEECCCCCE---EEEEeCCCeEEEEECCCCcEE--------------EEEcCcCC
Confidence 722 222 235666554 5999999996 889999999999999999854 45778999
Q ss_pred ceeEEEEcCCc--e-EEEEcCCcEEEEECCCCceEEEEe--eccCCeEEEEEEec-CCEEEEEeCCCccccCcceEEEEE
Q 046773 296 FVGRVRVTSHE--S-AVACTSSRVITFDLRNQGMVLGER--GYGRGLYVTSVDVN-AEAYIVVENRELENQNRRLAIVRR 369 (453)
Q Consensus 296 ~v~~v~~s~~~--~-~vas~d~tIrlWDl~t~~~~~~~~--g~~~~~~v~~~~~~-g~~l~s~s~dg~~~~~~~~i~Iw~ 369 (453)
.|.+++|++++ + ++++.|++|+|||+++++++..+. .+.+.....+++++ +..+++++.|+ +|+|||
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-------~v~~wd 243 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG-------TVSLVD 243 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS-------EEEEEE
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC-------cEEEEE
Confidence 99999999765 3 456778999999999998776653 33333333445554 35678899999 999999
Q ss_pred cCCCeeEEEEEecCCCeeEEEEeeCCC-eEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCC-EEEEE-eC
Q 046773 370 VDTFEEVCRFSLRADRNVNVMGCMNQG-YALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDR-HVAAS-CG 443 (453)
Q Consensus 370 ~~tg~~v~~l~~~~~~v~~~~~~~~~~-~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~-~lasg-~D 443 (453)
+.+++++.++..|.+.|..+.|+|++. ++++++. ++|||||+.+++++ .+.+|.+. |+ +|+||++ .|+|+ .|
T Consensus 244 ~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~-V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 244 TKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF-VRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp SCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC-EEEEEECSSSTTEEEEEETT
T ss_pred CCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC-EEEEEEeCCCCeEEEEEcCC
Confidence 999999999999999999999999885 5667776 99999999999875 57899999 88 6779886 56788 99
Q ss_pred CcEEEEecC
Q 046773 444 TNIHLWDFG 452 (453)
Q Consensus 444 ~~IklWDl~ 452 (453)
++|++|++.
T Consensus 322 ~~v~~w~v~ 330 (344)
T 4gqb_B 322 HQVVHHVVP 330 (344)
T ss_dssp SCEEEEECC
T ss_pred CeEEEEECC
Confidence 999999975
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-38 Score=312.23 Aligned_cols=273 Identities=11% Similarity=0.116 Sum_probs=215.9
Q ss_pred CCCCCCCeEEEEEEe--------cCCEEEEEeCCCcEEEEECCC-------CeEEEEecCCCCCccccccceEEEEEEc-
Q 046773 138 DVDNPDGLTCRCLTL--------SDLYLACGFADGAVRLFDLTT-------RLHVRTFRPQHSDRLGQFSRAVSGIIIT- 201 (453)
Q Consensus 138 gh~~~d~v~v~~laf--------s~~~LaSGS~D~TIrlWD~~t-------g~~~~tl~gh~~~~~~~~s~~V~~i~f~- 201 (453)
||.++ |+|++| ++++|||||.|++|||||+.+ +++.++|.+|.. .|.+++|+
T Consensus 19 gH~~~----V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~--------~V~~~~~~~ 86 (343)
T 2xzm_R 19 GHSDW----VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH--------FVSDLALSQ 86 (343)
T ss_dssp CCSSC----EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS--------CEEEEEECS
T ss_pred cchhh----hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC--------ceEEEEECC
Confidence 89855 889998 346999999999999999975 457788988764 58888885
Q ss_pred -CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccc
Q 046773 202 -DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDL 278 (453)
Q Consensus 202 -g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l 278 (453)
+..|++||.|++|+|||+.+ + +..+.+|...|. .|+|+|+|++ |++|+.|++|+|||+.....+.-
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~----~v~~sp~~~~---l~s~~~d~~i~~wd~~~~~~~~~--- 155 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVY----SVAFSPDNRQ---ILSAGAEREIKLWNILGECKFSS--- 155 (343)
T ss_dssp STTEEEEEETTSEEEEEETTS-SCEEEEEECCCSCEE----EEEECSSTTE---EEEEETTSCEEEEESSSCEEEEC---
T ss_pred CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcEE----EEEECCCCCE---EEEEcCCCEEEEEeccCCceeee---
Confidence 67899999999999999987 4 456677776654 4899999996 88999999999999985443210
Q ss_pred cCCcceeeeeeeeeeccceeEEEEcCCc------------eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC
Q 046773 279 TDHNTVMGWRMLTEFTEFVGRVRVTSHE------------SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA 346 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~~v~~v~~s~~~------------~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g 346 (453)
....+|..+|.+++|+|+. +++++.|++|++||.. .++...+.+|...+...+|+|++
T Consensus 156 ---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 156 ---------AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNG 225 (343)
T ss_dssp ---------CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTS
T ss_pred ---------ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCC
Confidence 1123678899999999864 4566778999999954 45555567777767667788889
Q ss_pred CEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEE--Eec--
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMY--SFR-- 421 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~--tL~-- 421 (453)
+.+++++.|+ +|+|||+. .......+. +...+..+.++|++.+++++++++|+|||+.+++++. ++.
T Consensus 226 ~~l~sgs~dg-------~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~ 297 (343)
T 2xzm_R 226 KYIATGGKDK-------KLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAE 297 (343)
T ss_dssp SEEEEEETTC-------EEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCC
T ss_pred CEEEEEcCCC-------eEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecC
Confidence 9999999999 99999994 444444442 3455889999999877665666899999999887654 554
Q ss_pred ---------ccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 422 ---------ERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 422 ---------gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+|... |+ +|+||+++|++| .|++|+|||+.
T Consensus 298 ~~~~~~~~~~~~~~-v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 298 PITKAEGQKGKNPQ-CTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp SGGGBTTBCCSCCC-EEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred cchhhhhhcCCCCc-eEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 67777 77 678999999999 99999999974
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=310.57 Aligned_cols=276 Identities=14% Similarity=0.131 Sum_probs=206.1
Q ss_pred CCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCC--eEEEEe-cC-CCCCccccccceEEEEEEc--CCeEEEEeCC
Q 046773 138 DVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTR--LHVRTF-RP-QHSDRLGQFSRAVSGIIIT--DSQLIFATLD 211 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg--~~~~tl-~g-h~~~~~~~~s~~V~~i~f~--g~~LasgS~D 211 (453)
||..+ |+|++|++++|||||.|++|||||+.++ +++.++ .+ |.. .|.+++|+ +..|++||.|
T Consensus 12 ~h~~~----v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~--------~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 12 LYKEK----IWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKK--------AIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCSSC----EEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCS--------CEEEEEECTTSSEEEEEETT
T ss_pred cCCCc----eeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccC--------CEEEEEECCCCCEEEEEeCC
Confidence 89855 8999999999999999999999999986 567777 34 433 68889885 6789999999
Q ss_pred CCEEEEEeecC------C--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC-CcEEecccccCCc
Q 046773 212 GDIHVAVIDDV------A--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA-EEVFVGGDLTDHN 282 (453)
Q Consensus 212 ~tIkvWd~~~~------g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t-g~~~~g~~l~~~~ 282 (453)
++|+|||++.. . ..++.+|...|. .|+|+|+|++ |+|||.|++|+|||++. ++..
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~----~v~~sp~g~~---las~s~D~~v~iwd~~~~~~~~--------- 143 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVK----GVAWSNDGYY---LATCSRDKSVWIWETDESGEEY--------- 143 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEE----EEEECTTSCE---EEEEETTSCEEEEECCTTCCCC---------
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEE----EEEECCCCCE---EEEEeCCCEEEEEeccCCCCCe---------
Confidence 99999998531 1 234556766554 4899999996 89999999999999954 3211
Q ss_pred ceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCC--ceEEEEeeccCCeEEEEEEec--CCEEEEEeCCC
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQ--GMVLGERGYGRGLYVTSVDVN--AEAYIVVENRE 356 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~--~~~~~~~g~~~~~~v~~~~~~--g~~l~s~s~dg 356 (453)
....++.+|...|.+|+|+|++ +++++.|++|||||+.++ +++..+.+|...+...+|+++ +..+++++.|+
T Consensus 144 --~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 144 --ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp --EEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS
T ss_pred --EEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC
Confidence 0114577899999999999876 455567899999999876 466666777766655556666 45789999999
Q ss_pred ccccCcceEEEEEcCCC--------eeEEEEEe-cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCe--EEEE-eccc
Q 046773 357 LENQNRRLAIVRRVDTF--------EEVCRFSL-RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGE--YMYS-FRER 423 (453)
Q Consensus 357 ~~~~~~~~i~Iw~~~tg--------~~v~~l~~-~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~--~l~t-L~gh 423 (453)
+|+||++.++ .++..+.. |...|..+.+++ ++++++++. ++|+|||+.+++ ++.. +.+|
T Consensus 222 -------~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h 293 (330)
T 2hes_X 222 -------TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-NGLIASVGADGVLAVYEEVDGEWKVFAKRALCH 293 (330)
T ss_dssp -------CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-TSCEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred -------eEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-CCEEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence 9999998754 33444433 667788999884 457777776 999999999884 3433 4678
Q ss_pred CC-ceEE--EEec--CCCEEEEE-eCCcEEEEecC
Q 046773 424 IG-EEVI--AFVG--DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 424 ~~-~~V~--a~s~--d~~~lasg-~D~~IklWDl~ 452 (453)
.. . |+ +|+| |+++|||+ .|++|+|||+.
T Consensus 294 ~~~~-v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 294 GVYE-INVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp TTSC-EEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred ccce-EEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 77 5 77 5667 78899999 99999999985
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=298.53 Aligned_cols=275 Identities=12% Similarity=0.160 Sum_probs=225.3
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~ 212 (453)
.||..+ |++++|++ ++||+|+.|++|+|||+.++++++++.+|.. .|.+++|+ ++.|++|+.|+
T Consensus 20 ~gh~~~----v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 20 AGHTKA----VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--------GISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp CCCSSC----EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS--------CEEEEEECTTSSEEEEEETTS
T ss_pred cccCCc----EEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCC--------ceEEEEEcCCCCEEEEECCCC
Confidence 489855 88999986 6999999999999999999999999998764 57888875 67899999999
Q ss_pred CEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 213 DIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 213 tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
+|+|||+++.. +..+.+|...+. .++|+|++++ |++|+.|++|+|||+++++.. ..+.
T Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~v~----~~~~~~~~~~---l~s~~~d~~i~iwd~~~~~~~--------------~~~~ 146 (312)
T 4ery_A 88 TLKIWDVSSGKCLKTLKGHSNYVF----CCNFNPQSNL---IVSGSFDESVRIWDVKTGKCL--------------KTLP 146 (312)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEE----EEEECSSSSE---EEEEETTSCEEEEETTTCCEE--------------EEEC
T ss_pred EEEEEECCCCcEEEEEcCCCCCEE----EEEEcCCCCE---EEEEeCCCcEEEEECCCCEEE--------------EEec
Confidence 99999998722 455666765543 4899999986 889999999999999998743 3466
Q ss_pred eeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 292 EFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
.|..+|.+++|+|++ +++++.|++|++||+++++++... ..+.......+|+++++.+++++.|+ .++||
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-------~i~iw 219 (312)
T 4ery_A 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-------TLKLW 219 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT-------EEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC-------eEEEE
Confidence 788899999999876 455567899999999998877664 33444455567888899999999999 99999
Q ss_pred EcCCCeeEEEEEecCCCee--EEEEe-eCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-
Q 046773 369 RVDTFEEVCRFSLRADRNV--NVMGC-MNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS- 441 (453)
Q Consensus 369 ~~~tg~~v~~l~~~~~~v~--~~~~~-~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg- 441 (453)
|+.+++++..+..+..... ...++ +++.++++++. ++|+|||+.+++++.++.+|.+. |. +++|+++.|+++
T Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPTENIIASAA 298 (312)
T ss_dssp ETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC-EEEEEECSSSSEEEEEE
T ss_pred ECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc-EEEEeecCcCCceEEEE
Confidence 9999999988877764432 22334 45566666666 99999999999999999999998 77 678999999987
Q ss_pred --eCCcEEEEecC
Q 046773 442 --CGTNIHLWDFG 452 (453)
Q Consensus 442 --~D~~IklWDl~ 452 (453)
.|++|+||+..
T Consensus 299 ~~~d~~i~~W~~d 311 (312)
T 4ery_A 299 LENDKTIKLWKSD 311 (312)
T ss_dssp CTTTCCEEEEECC
T ss_pred ccCCccEEEecCC
Confidence 49999999975
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=334.19 Aligned_cols=287 Identities=12% Similarity=0.097 Sum_probs=224.4
Q ss_pred CCCCCCCCeEEEEEEecCC---EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCC
Q 046773 137 SDVDNPDGLTCRCLTLSDL---YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLD 211 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~~---~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D 211 (453)
.||..+ |++++|+++ +|||||.|++|||||+.+++++++|.+|.. .|.+++|+ ++.|+|||.|
T Consensus 144 ~gh~~~----v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~--------~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 144 TGQARA----MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK--------FVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp CCCSSC----EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS--------CEEEEEECTTSSEEEEEETT
T ss_pred cCCCCC----ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC--------ceEEEEECCCCCEEEEEECC
Confidence 489854 899999973 699999999999999999999999998764 68888885 6789999999
Q ss_pred CCEEEEEeecCC--cceEE-------eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE---eccc-c
Q 046773 212 GDIHVAVIDDVA--NETRT-------AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF---VGGD-L 278 (453)
Q Consensus 212 ~tIkvWd~~~~g--~~~~~-------~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~---~g~~-l 278 (453)
++|+|||+.+ + +.++. +|.+.|. .|+|+|||++ |+|||.|++|||||++++++. ..+. .
T Consensus 212 ~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~----~v~~spdg~~---l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~ 283 (611)
T 1nr0_A 212 GTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVF----GLTWSPDGTK---IASASADKTIKIWNVATLKVEKTIPVGTRI 283 (611)
T ss_dssp SCEEEEETTT-CCEEEECBCTTSSSCSSSSCEE----EEEECTTSSE---EEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred CcEEEEECCC-CcEeeeeccccccccccCCCEE----EEEECCCCCE---EEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence 9999999876 4 23332 4655553 4899999996 889999999999999998732 1110 0
Q ss_pred -----------------cCCcceeee--------eeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE-
Q 046773 279 -----------------TDHNTVMGW--------RMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE- 330 (453)
Q Consensus 279 -----------------~~~~~v~~w--------~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~- 330 (453)
..+..+..| ..+.+|...|.+++|+|++ +++++.|++|++||+.++.+....
T Consensus 284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~ 363 (611)
T 1nr0_A 284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 363 (611)
T ss_dssp GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS
T ss_pred cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecc
Confidence 001112222 3567999999999999876 455677899999999987653321
Q ss_pred eec-----------------------------------------------------------------------------
Q 046773 331 RGY----------------------------------------------------------------------------- 333 (453)
Q Consensus 331 ~g~----------------------------------------------------------------------------- 333 (453)
.+|
T Consensus 364 ~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~ 443 (611)
T 1nr0_A 364 DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 443 (611)
T ss_dssp CSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE
T ss_pred cCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCcee
Confidence 111
Q ss_pred ----cCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee--EEEEEecCCCeeEEEEeeCCCeEEEEeC-CeE
Q 046773 334 ----GRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE--VCRFSLRADRNVNVMGCMNQGYALMCVE-GVI 406 (453)
Q Consensus 334 ----~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~--v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tI 406 (453)
.......+|+|++..+++++.|+ +|+||++++++. +.. ..|+..|..+.|+|++.++++++. ++|
T Consensus 444 ~~~~~~~v~~va~spdg~~lasgs~D~-------~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v 515 (611)
T 1nr0_A 444 EVPISYNSSCVALSNDKQFVAVGGQDS-------KVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKV 515 (611)
T ss_dssp EEECSSCEEEEEECTTSCEEEEEETTS-------EEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecCCCceEEEEeCCCCEEEEeCCCC-------eEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCE
Confidence 11123456778889999999999 999999988653 333 568888999999999999998887 999
Q ss_pred EEEECCC-CeEEEE--ecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 407 RVWEVEG-GEYMYS--FRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 407 rlWD~~t-G~~l~t--L~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+|||+.+ ++++.+ +.+|.+. |+ +|+||+++|||+ .|++|+|||+.
T Consensus 516 ~~w~~~~~~~~~~~~~~~~H~~~-V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 516 IPYSVANNFELAHTNSWTFHTAK-VACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp EEEEGGGTTEESCCCCCCCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCceeeeeeeeecccc-eeEEEECCCCCEEEEEECCCcEEEEECC
Confidence 9999998 777765 3459888 88 788999999999 99999999974
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=316.87 Aligned_cols=274 Identities=10% Similarity=0.102 Sum_probs=210.3
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeC------CCcEEEEECCCCeEEEEe----cCCCCCccccccceEEEEEEcC-C
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFA------DGAVRLFDLTTRLHVRTF----RPQHSDRLGQFSRAVSGIIITD-S 203 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~------D~TIrlWD~~tg~~~~tl----~gh~~~~~~~~s~~V~~i~f~g-~ 203 (453)
.+|+.. |+|++||+ ++|||||. |++|++|+..+++...++ .+|.. .|.+++|++ .
T Consensus 39 ~~H~~~----V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~--------~V~~~~~s~d~ 106 (357)
T 4g56_B 39 ACMEVQ----IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEA--------GVTDVAWVSEK 106 (357)
T ss_dssp -CCCSE----EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSS--------CEEEEEEETTT
T ss_pred ccccCC----EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCC--------CEEEEEEcCCC
Confidence 378733 89999986 69999997 788999999998764443 23332 588899874 4
Q ss_pred eEEEEeCCCCEEEEEeecCC-c--c--eEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccc
Q 046773 204 QLIFATLDGDIHVAVIDDVA-N--E--TRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDL 278 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~~g-~--~--~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l 278 (453)
.+++++.|++|+|||+.+.. . . ...+|.+.|. .|+|+|||++ |++|+.|++|+|||+++++.+
T Consensus 107 ~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~----~v~~spdg~~---l~sgs~dg~v~iwd~~~~~~~----- 174 (357)
T 4g56_B 107 GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVK----TLSVFSDGTQ---AVSGGKDFSVKVWDLSQKAVL----- 174 (357)
T ss_dssp EEEEEETTSCEEEC--------CCCCEEECCCSSCEE----EEEECSSSSE---EEEEETTSCEEEEETTTTEEE-----
T ss_pred CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEE----EEEECCCCCE---EEEEeCCCeEEEEECCCCcEE-----
Confidence 68889999999999997721 1 1 1224555543 4899999996 889999999999999998853
Q ss_pred cCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEE--EecC-CEEEEE
Q 046773 279 TDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSV--DVNA-EAYIVV 352 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~--~~~g-~~l~s~ 352 (453)
..+.+|...|.+|+|++++ +++++.|++|+|||+++++++.....+.+...+.++ +|++ ..++++
T Consensus 175 ---------~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g 245 (357)
T 4g56_B 175 ---------KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245 (357)
T ss_dssp ---------EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred ---------EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence 3467889999999998754 345567899999999998765544333334445554 4543 467888
Q ss_pred eCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCC-eEEEEeC-CeEEEEECCCCeEEEEecccCCceEE-
Q 046773 353 ENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQG-YALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI- 429 (453)
Q Consensus 353 s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~-~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~- 429 (453)
+.|+ +|+|||+.+++++.++..+...|..+.++|++. ++++++. ++|||||++++++++.+ +|.+. |+
T Consensus 246 ~~d~-------~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~-V~~ 316 (357)
T 4g56_B 246 DETG-------NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDF-VTG 316 (357)
T ss_dssp ESSS-------CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSC-EEE
T ss_pred eccc-------ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCC-EEE
Confidence 9999 999999999999999999988899999999875 5666776 99999999999998876 79998 88
Q ss_pred -EEec-CCCEEEEE-eCCcEEEEecC
Q 046773 430 -AFVG-DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 430 -a~s~-d~~~lasg-~D~~IklWDl~ 452 (453)
+|+| |+++|+|+ .|++|+|||+.
T Consensus 317 vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 317 VAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 5677 88999999 99999999984
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-37 Score=305.03 Aligned_cols=279 Identities=13% Similarity=0.172 Sum_probs=217.7
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEE--EEe-cCCCCCccccccceEEEEEEc--CCeEEEEe
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHV--RTF-RPQHSDRLGQFSRAVSGIIIT--DSQLIFAT 209 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~--~tl-~gh~~~~~~~~s~~V~~i~f~--g~~LasgS 209 (453)
.||.+ .. |++++|++ ++|||||.|++|||||+++++.+ ..+ .+|.. .|.+++|+ ++.|++||
T Consensus 12 ~~h~~-~~--v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~--------~v~~~~~sp~g~~l~s~s 80 (345)
T 3fm0_A 12 PAHPD-SR--CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR--------TVRKVAWSPCGNYLASAS 80 (345)
T ss_dssp CCSTT-SC--EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSS--------CEEEEEECTTSSEEEEEE
T ss_pred cCCCC-Cc--EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCC--------cEEEEEECCCCCEEEEEE
Confidence 37873 13 78899986 69999999999999999998743 333 45543 68888885 67899999
Q ss_pred CCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceee
Q 046773 210 LDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMG 286 (453)
Q Consensus 210 ~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~ 286 (453)
.|++|+||+++... +.++.+|...|. .|+|+|+|++ |++||.|++|+|||++++.... .
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~----~v~~sp~~~~---l~s~s~D~~v~iwd~~~~~~~~-----------~ 142 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVK----SVAWAPSGNL---LATCSRDKSVWVWEVDEEDEYE-----------C 142 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEE----EEEECTTSSE---EEEEETTSCEEEEEECTTSCEE-----------E
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCce----EEEEeCCCCE---EEEEECCCeEEEEECCCCCCeE-----------E
Confidence 99999999987622 345566766654 5899999996 8899999999999998865211 1
Q ss_pred eeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCc--eEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 287 WRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQG--MVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 287 w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~--~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
...+.+|...|.+++|+|++ +++++.|++|+|||+++++ ++.++.+|...+...+|+|+++.+++++.|+
T Consensus 143 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~------ 216 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR------ 216 (345)
T ss_dssp EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------
T ss_pred EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC------
Confidence 24567899999999999876 4566778999999999875 3344567777666677788899999999999
Q ss_pred ceEEEEEcCCC---------------eeEEEEEe-cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCe---------E
Q 046773 363 RLAIVRRVDTF---------------EEVCRFSL-RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGE---------Y 416 (453)
Q Consensus 363 ~~i~Iw~~~tg---------------~~v~~l~~-~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~---------~ 416 (453)
+|+||+...+ +++.++.. |...+..+.+++++..+++++. ++|+|||..++. .
T Consensus 217 -~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 217 -TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp -CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred -eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 9999986321 34455544 5667899999999999988887 999999998653 1
Q ss_pred EEEecccCCceEE--EEecCC-CEEEEE-eCCcEEEEecC
Q 046773 417 MYSFRERIGEEVI--AFVGDD-RHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 417 l~tL~gh~~~~V~--a~s~d~-~~lasg-~D~~IklWDl~ 452 (453)
.+.+.+|.+. |+ +|+|++ .+|||+ .|++|+||++.
T Consensus 296 ~~~~~~h~~~-V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 296 AHLHQAHSQD-VNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp EEETTSSSSC-EEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred eeecccccCc-EeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 2345689888 88 677887 489999 99999999975
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=308.78 Aligned_cols=279 Identities=15% Similarity=0.204 Sum_probs=219.5
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCcccc----------ccceEEEEEEc--CC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQ----------FSRAVSGIIIT--DS 203 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~----------~s~~V~~i~f~--g~ 203 (453)
+|..+ |+|++|++ ++||+|+ |++|+|||+.+|+++.++.+|......+ ....|.+++|+ ++
T Consensus 62 ~h~~~----V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 62 DHTSV----VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp ECSSC----CCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred CCCCE----EEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 58744 78999986 6999987 7899999999999999998654210000 01137788885 67
Q ss_pred eEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCC
Q 046773 204 QLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDH 281 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~ 281 (453)
.|++|+.|++|+|||+++ + ...+.+|...|. .++|+|+|++ |++||.|++|+|||++++++..
T Consensus 137 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~----~~~~~p~~~~---l~s~s~d~~v~iwd~~~~~~~~------- 201 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIY----SLDYFPSGDK---LVSGSGDRTVRIWDLRTGQCSL------- 201 (393)
T ss_dssp EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEE----EEEECTTSSE---EEEEETTSEEEEEETTTTEEEE-------
T ss_pred EEEEEcCCCeEEEEECCC-CcEEEEEccCCCCEE----EEEEcCCCCE---EEEecCCCcEEEEECCCCeeEE-------
Confidence 899999999999999987 4 455666766654 5899999986 8899999999999999988431
Q ss_pred cceeeeeeeeeeccceeEEEEcC-Cc--eEEEEcCCcEEEEECCCCceEEEE-------eeccCCeEEEEEEecCCEEEE
Q 046773 282 NTVMGWRMLTEFTEFVGRVRVTS-HE--SAVACTSSRVITFDLRNQGMVLGE-------RGYGRGLYVTSVDVNAEAYIV 351 (453)
Q Consensus 282 ~~v~~w~~l~~h~~~v~~v~~s~-~~--~~vas~d~tIrlWDl~t~~~~~~~-------~g~~~~~~v~~~~~~g~~l~s 351 (453)
++ .+...+.+++++| ++ +++++.|++|++||++++.++..+ .+|...+...+|+++++.+++
T Consensus 202 -------~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 202 -------TL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp -------EE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred -------EE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 11 2346788899987 44 455577899999999998776554 356555666667788889999
Q ss_pred EeCCCccccCcceEEEEEcCC------------CeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEE
Q 046773 352 VENRELENQNRRLAIVRRVDT------------FEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMY 418 (453)
Q Consensus 352 ~s~dg~~~~~~~~i~Iw~~~t------------g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~ 418 (453)
++.|+ +|+|||+.+ +.+...+..|.+.+..+.+++++.++++++. ++|+|||+++++++.
T Consensus 274 ~s~d~-------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~ 346 (393)
T 1erj_A 274 GSLDR-------SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 346 (393)
T ss_dssp EETTS-------EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred EeCCC-------EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 99999 999999875 3455677788888999999999999998887 999999999999999
Q ss_pred EecccCCceEEEE--e------cCCCEEEEE-eCCcEEEEecC
Q 046773 419 SFRERIGEEVIAF--V------GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 419 tL~gh~~~~V~a~--s------~d~~~lasg-~D~~IklWDl~ 452 (453)
+|.+|.+. |.++ + |++++|||| .|++|+|||+.
T Consensus 347 ~l~~h~~~-v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 347 MLQGHRNS-VISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEECCSSC-EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EECCCCCC-EEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 99999998 8744 3 478899999 99999999974
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-36 Score=291.55 Aligned_cols=275 Identities=13% Similarity=0.187 Sum_probs=217.4
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCe-----EEEEecCCCCCccccccceEEEEEEc--CCeEE
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRL-----HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLI 206 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~-----~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~La 206 (453)
+||.++ |+||+|+| ++|||||.|++|||||+.+++ +.++|++|.. .|.+++|+ ++.|+
T Consensus 35 ~GH~~~----V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~--------~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 35 KGHNGW----VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH--------FVSDVVISSDGQFAL 102 (340)
T ss_dssp CCCSSC----EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS--------CEEEEEECTTSSEEE
T ss_pred CCccCC----EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC--------CEEEEEECCCCCEEE
Confidence 399855 89999985 589999999999999987754 6788988754 68888885 67899
Q ss_pred EEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCccee
Q 046773 207 FATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVM 285 (453)
Q Consensus 207 sgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~ 285 (453)
+|+.|++|++|+..... ......+...+ ..+.++++++. |++|+.|+.+++||+.......
T Consensus 103 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---l~s~s~d~~~~~~d~~~~~~~~----------- 164 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDV----LSVAFSSDNRQ---IVSGSRDKTIKLWNTLGVCKYT----------- 164 (340)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCE----EEEEECTTSSC---EEEEETTSCEEEECTTSCEEEE-----------
T ss_pred EEcccccceEEeecccceeeeecCCCCce----eEEEEeecCcc---ceeecCCCeEEEEEeCCCceEE-----------
Confidence 99999999999987621 11222222211 24678999886 8899999999999998766321
Q ss_pred eeeeeeeeccceeEEEEcCCc----eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccC
Q 046773 286 GWRMLTEFTEFVGRVRVTSHE----SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQN 361 (453)
Q Consensus 286 ~w~~l~~h~~~v~~v~~s~~~----~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~ 361 (453)
..+.+|...+..++|+++. .++++.|++|++||+++++++..+.+|...+...+|+|+++.+++++.|+
T Consensus 165 --~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg----- 237 (340)
T 4aow_A 165 --VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG----- 237 (340)
T ss_dssp --ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC-----
T ss_pred --EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC-----
Confidence 2345788899999998653 24456789999999999887777777777666667788889999999999
Q ss_pred cceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEec---------ccCCceEE--E
Q 046773 362 RRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFR---------ERIGEEVI--A 430 (453)
Q Consensus 362 ~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~---------gh~~~~V~--a 430 (453)
+|+|||+.+.+++..+..+ +.+..+.+++++..++++.+++|+|||++++.++..+. +|... |+ +
T Consensus 238 --~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~ 313 (340)
T 4aow_A 238 --QAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-CTSLA 313 (340)
T ss_dssp --EEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC-EEEEE
T ss_pred --eEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC-EEEEE
Confidence 9999999999998888654 45788888877655444445999999999998887765 56677 77 6
Q ss_pred EecCCCEEEEE-eCCcEEEEecC
Q 046773 431 FVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 431 ~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|+||+++|++| .|++|+|||+.
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeCC
Confidence 78999999999 99999999974
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=328.63 Aligned_cols=276 Identities=12% Similarity=0.174 Sum_probs=224.4
Q ss_pred CCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCC-----CeEEEEecCCCCCccccccceEEEEEEc--CCeEEE
Q 046773 138 DVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTT-----RLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIF 207 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~t-----g~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~Las 207 (453)
||+++ |+|++|++ ++|||||.|++|||||+.+ +.+.++|.+|.. .|.+++|+ ++.|+|
T Consensus 380 ~H~~~----V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~--------~v~~v~~s~~g~~l~s 447 (694)
T 3dm0_A 380 AHTDM----VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH--------FVEDVVLSSDGQFALS 447 (694)
T ss_dssp CCSSC----EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS--------CEEEEEECTTSSEEEE
T ss_pred cCCce----eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC--------cEEEEEECCCCCEEEE
Confidence 89854 89999974 5899999999999999976 456788988764 57888875 678999
Q ss_pred EeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCccee
Q 046773 208 ATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVM 285 (453)
Q Consensus 208 gS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~ 285 (453)
||.|++|+|||+.+ + ...+.+|...|. .|+|+|++++ |+|||.|++|+|||+.....+.-
T Consensus 448 gs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~----~~~~s~~~~~---l~s~s~D~~i~iwd~~~~~~~~~---------- 509 (694)
T 3dm0_A 448 GSWDGELRLWDLAA-GVSTRRFVGHTKDVL----SVAFSLDNRQ---IVSASRDRTIKLWNTLGECKYTI---------- 509 (694)
T ss_dssp EETTSEEEEEETTT-TEEEEEEECCSSCEE----EEEECTTSSC---EEEEETTSCEEEECTTSCEEEEE----------
T ss_pred EeCCCcEEEEECCC-CcceeEEeCCCCCEE----EEEEeCCCCE---EEEEeCCCEEEEEECCCCcceee----------
Confidence 99999999999987 5 455667877664 5899999997 88999999999999876653210
Q ss_pred eeeeeeeeccceeEEEEcCCc----eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccC
Q 046773 286 GWRMLTEFTEFVGRVRVTSHE----SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQN 361 (453)
Q Consensus 286 ~w~~l~~h~~~v~~v~~s~~~----~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~ 361 (453)
.....+|..+|.+++|+|++ +++++.|++|+|||++++++...+.+|...+...+++++++.+++++.|+
T Consensus 510 -~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg----- 583 (694)
T 3dm0_A 510 -SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG----- 583 (694)
T ss_dssp -CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred -ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC-----
Confidence 01124788999999999865 56667889999999999888777778877777777888899999999999
Q ss_pred cceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCc---------------
Q 046773 362 RRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGE--------------- 426 (453)
Q Consensus 362 ~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~--------------- 426 (453)
+|+|||+.+++++..+..+ ..+..+.+++++..+++++++.|+|||+++++++..+..+...
T Consensus 584 --~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (694)
T 3dm0_A 584 --VVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660 (694)
T ss_dssp --BCEEEETTTTEEEECCBCS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------
T ss_pred --eEEEEECCCCceEEEecCC-CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCc
Confidence 9999999999888776543 4588899999887777666688999999999999888643211
Q ss_pred ---eEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 427 ---EVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 427 ---~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+. +|+||+++|+|| .|++|+|||++
T Consensus 661 ~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 661 KVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 133 678999999999 99999999985
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=322.65 Aligned_cols=272 Identities=14% Similarity=0.148 Sum_probs=220.5
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCe--EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRL--HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLD 211 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D 211 (453)
||.++ |+|++|+| ++||||+.|++|||||+.+++ +..++.+|.. .|.+++|+ ++.|++++.|
T Consensus 57 ~h~~~----v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~--------~v~~v~fs~dg~~l~~~~~~ 124 (611)
T 1nr0_A 57 EHSHQ----TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG--------PVKDISWDSESKRIAAVGEG 124 (611)
T ss_dssp CCSSC----EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS--------CEEEEEECTTSCEEEEEECC
T ss_pred CCCCc----eEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCC--------ceEEEEECCCCCEEEEEECC
Confidence 89854 88999986 699999999999999998654 4567877654 68888886 6789988876
Q ss_pred C----CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee
Q 046773 212 G----DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW 287 (453)
Q Consensus 212 ~----tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w 287 (453)
. +|++||... ...++.+|...|. .|+|+|+++. .|+|||.|++|+|||.+++++.
T Consensus 125 ~~~~~~v~~wd~~~-~~~~l~gh~~~v~----~v~f~p~~~~--~l~s~s~D~~v~lwd~~~~~~~-------------- 183 (611)
T 1nr0_A 125 RERFGHVFLFDTGT-SNGNLTGQARAMN----SVDFKPSRPF--RIISGSDDNTVAIFEGPPFKFK-------------- 183 (611)
T ss_dssp SSCSEEEEETTTCC-BCBCCCCCSSCEE----EEEECSSSSC--EEEEEETTSCEEEEETTTBEEE--------------
T ss_pred CCceeEEEEeeCCC-CcceecCCCCCce----EEEECCCCCe--EEEEEeCCCeEEEEECCCCeEe--------------
Confidence 3 566776433 2566777877664 5999999874 3889999999999999887743
Q ss_pred eeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEEe-------eccCCeEEEEEEecCCEEEEEeCCCcc
Q 046773 288 RMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGER-------GYGRGLYVTSVDVNAEAYIVVENRELE 358 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~~-------g~~~~~~v~~~~~~g~~l~s~s~dg~~ 358 (453)
+++.+|.++|.+|+|+|++. ++++.|++|||||+.+++++..+. +|...+...+|+|+++.+++++.|+
T Consensus 184 ~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-- 261 (611)
T 1nr0_A 184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-- 261 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS--
T ss_pred eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC--
Confidence 45778999999999999874 556778999999999998876652 6776666667788899999999999
Q ss_pred ccCcceEEEEEcCCCeeEEEEEecC---CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEe
Q 046773 359 NQNRRLAIVRRVDTFEEVCRFSLRA---DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFV 432 (453)
Q Consensus 359 ~~~~~~i~Iw~~~tg~~v~~l~~~~---~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s 432 (453)
+|+|||+.+++++.++..+. .....+.+ ++..+++++. ++|++||+++++++.++.||.+. |+ +|+
T Consensus 262 -----~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~-v~~l~~s 333 (611)
T 1nr0_A 262 -----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKA-ITALSSS 333 (611)
T ss_dssp -----EEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSC-EEEEEEC
T ss_pred -----eEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCC-EEEEEEe
Confidence 99999999999988886542 11223333 6777887777 99999999999999999999998 88 678
Q ss_pred cCCCEEEEE-eCCcEEEEecC
Q 046773 433 GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 433 ~d~~~lasg-~D~~IklWDl~ 452 (453)
||+++|+++ .|++|+|||+.
T Consensus 334 pdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 334 ADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETT
T ss_pred CCCCEEEEEeCCCcEEEEECC
Confidence 999999999 99999999974
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=310.72 Aligned_cols=267 Identities=14% Similarity=0.214 Sum_probs=223.9
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||..+ |++++|++ ++|++++.|++||+||+.+ +++.++.+|.. .|.+++|+ ++.|++|+.|++
T Consensus 301 ~h~~~----v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~--------~v~~~~~s~~g~~l~~~~~dg~ 367 (577)
T 2ymu_A 301 GHSSS----VWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSS--------SVWGVAFSPDGQTIASASDDKT 367 (577)
T ss_dssp CCSSC----EEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSS--------CEEEEEECTTSSEEEEEETTSE
T ss_pred cCCCC----eEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCC--------CEEEEEECCCCCEEEEEeCCCE
Confidence 78744 78999986 6999999999999999865 55678887654 57778875 678999999999
Q ss_pred EEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee
Q 046773 214 IHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 214 IkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
|++||.+..-+.++..|...+. .++|+|||++ |++|+.|++|+|||. +++.+ +++.+|
T Consensus 368 v~~~~~~~~~~~~~~~~~~~v~----~~~~s~dg~~---l~~~~~d~~v~~~~~-~~~~~--------------~~~~~~ 425 (577)
T 2ymu_A 368 VKLWNRNGQLLQTLTGHSSSVR----GVAFSPDGQT---IASASDDKTVKLWNR-NGQLL--------------QTLTGH 425 (577)
T ss_dssp EEEEETTCCEEEEEECCSSCEE----EEEECTTSSC---EEEEETTSEEEEECT-TCCEE--------------EEEECC
T ss_pred EEEEcCCCCEEEEecCCCCCeE----EEEECCCCCE---EEEEeCCCEEEEEeC-CCCEE--------------EEecCC
Confidence 9999965411455666765543 4899999997 889999999999996 44432 356788
Q ss_pred ccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 294 TEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 294 ~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
...|.+++|+|++. ++++.|++|++||+. ++++..+.+|...+...+|+|+++.+++++.|+ +|+||+.
T Consensus 426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~-------~i~iw~~- 496 (577)
T 2ymu_A 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-------TVKLWNR- 496 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTS-------EEEEEET-
T ss_pred CCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-------EEEEEcC-
Confidence 99999999998764 455678999999975 466666777877776677888899999999999 9999995
Q ss_pred CCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEE
Q 046773 372 TFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIH 447 (453)
Q Consensus 372 tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~Ik 447 (453)
+++++.++..|...|..+.++|+++++++++. ++|+|||. +|+++.+|.+|.+. |+ +|+||+++|+|+ .|++|+
T Consensus 497 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~-v~~~~fs~dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 497 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS-VWGVAFSPDGQTIASASSDKTVK 574 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSC-EEEEEECTTSSCEEEEETTSCEE
T ss_pred CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCC-EEEEEEcCCCCEEEEEeCCCEEE
Confidence 67889999999999999999999999998887 99999995 79999999999999 88 678999999999 999999
Q ss_pred EEe
Q 046773 448 LWD 450 (453)
Q Consensus 448 lWD 450 (453)
|||
T Consensus 575 ~Wd 577 (577)
T 2ymu_A 575 LWN 577 (577)
T ss_dssp EEC
T ss_pred EeC
Confidence 998
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=294.87 Aligned_cols=270 Identities=12% Similarity=0.206 Sum_probs=227.6
Q ss_pred CCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEE
Q 046773 137 SDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHV 216 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkv 216 (453)
.+|..+ |.|++|++++|++|+.|++|+|||++++++++++.+|.. .|.+++|++..|++|+.|++|++
T Consensus 156 ~~h~~~----v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~--------~v~~~~~~~~~l~s~s~dg~i~~ 223 (445)
T 2ovr_B 156 VGHTGG----VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTS--------TVRCMHLHEKRVVSGSRDATLRV 223 (445)
T ss_dssp CCCSSC----EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEEEEEEETTEEEEEETTSEEEE
T ss_pred cCCCCC----EEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCC--------cEEEEEecCCEEEEEeCCCEEEE
Confidence 478844 899999999999999999999999999999999998754 68889999999999999999999
Q ss_pred EEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecc
Q 046773 217 AVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 217 Wd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
||+.+.. ...+.+|...+. .++| +|+. |++|+.|++|+|||+++++.+ .++.+|..
T Consensus 224 wd~~~~~~~~~~~~~~~~v~----~~~~--~~~~---l~~~~~dg~i~iwd~~~~~~~--------------~~~~~~~~ 280 (445)
T 2ovr_B 224 WDIETGQCLHVLMGHVAAVR----CVQY--DGRR---VVSGAYDFMVKVWDPETETCL--------------HTLQGHTN 280 (445)
T ss_dssp EESSSCCEEEEEECCSSCEE----EEEE--CSSC---EEEEETTSCEEEEEGGGTEEE--------------EEECCCSS
T ss_pred EECCCCcEEEEEcCCcccEE----EEEE--CCCE---EEEEcCCCEEEEEECCCCcEe--------------EEecCCCC
Confidence 9998722 455556655543 3666 6665 889999999999999998753 34667889
Q ss_pred ceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee
Q 046773 296 FVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE 375 (453)
Q Consensus 296 ~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~ 375 (453)
.|.++.+++..+++++.|++|++||+++++++....+|. ..+.++.++++.+++++.|+ +++|||+.++++
T Consensus 281 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~ 351 (445)
T 2ovr_B 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ--SLTSGMELKDNILVSGNADS-------TVKIWDIKTGQC 351 (445)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC--SCEEEEEEETTEEEEEETTS-------CEEEEETTTCCE
T ss_pred ceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc--ccEEEEEEeCCEEEEEeCCC-------eEEEEECCCCcE
Confidence 999999988777888889999999999998877766554 45678889999999999999 999999999999
Q ss_pred EEEEEe---cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe-----cccCCceEE--EEecCCCEEEEE-eC
Q 046773 376 VCRFSL---RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF-----RERIGEEVI--AFVGDDRHVAAS-CG 443 (453)
Q Consensus 376 v~~l~~---~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL-----~gh~~~~V~--a~s~d~~~lasg-~D 443 (453)
+..+.. +...+..+.+ ++.++++++. ++|+|||+.+|+++.++ .+|.+. |+ +|+|++..|+++ .|
T Consensus 352 ~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~la~~~~d 428 (445)
T 2ovr_B 352 LQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV-VWRIRASNTKLVCAVGSRN 428 (445)
T ss_dssp EEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCE-EEEEEECSSEEEEEEECSS
T ss_pred EEEEccCCCCCCCEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCce-EEEEEecCCEEEEEEcccC
Confidence 998876 5555777766 4678888887 99999999999999988 466666 87 677999999999 99
Q ss_pred Cc----EEEEecCC
Q 046773 444 TN----IHLWDFGA 453 (453)
Q Consensus 444 ~~----IklWDl~~ 453 (453)
++ |.||||+.
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 98 99999973
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=307.58 Aligned_cols=275 Identities=13% Similarity=0.116 Sum_probs=205.2
Q ss_pred CCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeEE--EEecCCCCCccccccceEEEEEEc---CCeEEEEe
Q 046773 138 DVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLHV--RTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFAT 209 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~--~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS 209 (453)
+|... |+||+|+| ++||||+.|++|+|||+.+++.. .++.+|.. .|.+|+|+ +.+|+|||
T Consensus 117 ~~~~~----V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~--------~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 117 PFDRR----ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG--------SITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp ECSSC----EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSC--------CCCEEEECSSCTTEEEEEC
T ss_pred CCCCC----EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCC--------CEEEEEEeCCCCCEEEEEe
Confidence 57633 89999986 58999999999999999988754 44556654 68889985 56899999
Q ss_pred CCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 210 LDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 210 ~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
.|++|+|||+++ + ...+..+... ......++|+|++++ |++|+.|++|+|||+++.+. .
T Consensus 185 ~D~~v~iwd~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~---l~~g~~dg~i~~wd~~~~~~---------------~ 244 (435)
T 4e54_B 185 MEGTTRLQDFKG-NILRVFASSDTI-NIWFCSLDVSASSRM---VVTGDNVGNVILLNMDGKEL---------------W 244 (435)
T ss_dssp SSSCEEEEETTS-CEEEEEECCSSC-SCCCCCEEEETTTTE---EEEECSSSBEEEEESSSCBC---------------C
T ss_pred CCCEEEEeeccC-CceeEEeccCCC-CccEEEEEECCCCCE---EEEEeCCCcEeeeccCccee---------------E
Confidence 999999999986 3 2233222111 011124899999996 88999999999999976542 3
Q ss_pred eeeeeccceeEEEEcCCc--e-EEEEcCCcEEEEECCCCceEEEE---eeccCCeEEEEEEecCCEEEEEeCCCccccCc
Q 046773 289 MLTEFTEFVGRVRVTSHE--S-AVACTSSRVITFDLRNQGMVLGE---RGYGRGLYVTSVDVNAEAYIVVENRELENQNR 362 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~~--~-~vas~d~tIrlWDl~t~~~~~~~---~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~ 362 (453)
++.+|..+|.+|+|+|++ + ++++.|++|+|||+++.++.... .+|...+...+|++++..+++++.|+
T Consensus 245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~------ 318 (435)
T 4e54_B 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS------ 318 (435)
T ss_dssp CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS------
T ss_pred EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC------
Confidence 467889999999999764 3 34567899999999987543322 45555554455677889999999999
Q ss_pred ceEEEEEcCCCeeEEEEEecCCC------eeEEEEeeCCCeEEEEe------------C-CeEEEEECCCCeEEEEec-c
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADR------NVNVMGCMNQGYALMCV------------E-GVIRVWEVEGGEYMYSFR-E 422 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~------v~~~~~~~~~~~lls~s------------~-~tIrlWD~~tG~~l~tL~-g 422 (453)
+|+||++.++++...+..++.. .....+++++..++++. + ++|+|||+.+|+++.++. +
T Consensus 319 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~ 397 (435)
T 4e54_B 319 -EIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397 (435)
T ss_dssp -CEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS
T ss_pred -EEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC
Confidence 9999999999887777655432 12234455554444432 2 689999999999999986 4
Q ss_pred cCCceEE---EEecCCCEEEEEeCCcEEEEecC
Q 046773 423 RIGEEVI---AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 423 h~~~~V~---a~s~d~~~lasg~D~~IklWDl~ 452 (453)
|... |. +|+||+++||+|.|++|+|||+.
T Consensus 398 ~~~~-v~s~~~fspdg~~lasg~d~~i~iW~~~ 429 (435)
T 4e54_B 398 ESSG-ISSLNEFNPMGDTLASAMGYHILIWSQQ 429 (435)
T ss_dssp SCCC-CCCEEEECTTSSCEEEECSSEEEECCCC
T ss_pred CCCc-EEEEEEECCCCCEEEEEcCCcEEEEECC
Confidence 5555 54 68999999999988899999975
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=289.99 Aligned_cols=278 Identities=11% Similarity=0.038 Sum_probs=204.4
Q ss_pred EEEEEecC--CEEEEEeCCC-------cEEEEECCCCeEE----------EEecCCCCCccccccceEEEEEEcCCeEEE
Q 046773 147 CRCLTLSD--LYLACGFADG-------AVRLFDLTTRLHV----------RTFRPQHSDRLGQFSRAVSGIIITDSQLIF 207 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~-------TIrlWD~~tg~~~----------~tl~gh~~~~~~~~s~~V~~i~f~g~~Las 207 (453)
|+|++|++ ++||||+.|. +||||++..+... .+|.+|. ..|.+++++++.+++
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~--------~~v~s~~~~~~~~~~ 88 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDND--------DSPTAIDASKGIILV 88 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTS--------CCCCEEEEETTEEEE
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCC--------CceEEEEeCCCEEEE
Confidence 89999976 5899998765 5999999876531 2344433 256778888887776
Q ss_pred E-----------eCCCCEEEEEeecCC--cceEEeeecce---ecC-ceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC
Q 046773 208 A-----------TLDGDIHVAVIDDVA--NETRTAHFGSV---MDD-GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE 270 (453)
Q Consensus 208 g-----------S~D~tIkvWd~~~~g--~~~~~~~~~~v---~~~-~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg 270 (453)
| +.|+++|+|+++... ........... ..+ -..|+|||||+++ .+|||+.|++|||||++++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~l-a~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVA-AIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCE-EEEESCSSCEEEEEETTTT
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEE-EEEECCCCCEEEEeECCCC
Confidence 5 467889999987622 11111111000 001 1258999999984 3567889999999999998
Q ss_pred cEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE-EcCCcEEEEECCCCceEEEE--eeccCCeEEEEEEecCC
Q 046773 271 EVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA-CTSSRVITFDLRNQGMVLGE--RGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 271 ~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va-s~d~tIrlWDl~t~~~~~~~--~g~~~~~~v~~~~~~g~ 347 (453)
+... ++ .|...|.+|+|+|++..++ ++++++++|+..+++++... .+|...+...+|+|++.
T Consensus 168 ~~~~--------------~~-~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 168 TEKF--------------EI-ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp EEEE--------------EE-ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred cEEE--------------Ee-CCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence 8431 22 4667899999999886554 45678999999988876554 34443444456788888
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCCee----EEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe-c
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTFEE----VCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF-R 421 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg~~----v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL-~ 421 (453)
.+++++.++. ...++++|+...... ...+..|...|.++.++|+++++++++. ++|+|||++++++++++ .
T Consensus 233 ~l~~~s~d~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~ 309 (365)
T 4h5i_A 233 VLIAASLKKG---KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ 309 (365)
T ss_dssp EEEEEEESSS---CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT
T ss_pred EEEEEecCCc---ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC
Confidence 9999987761 111466677665532 3445667777999999999999998887 99999999999999985 7
Q ss_pred ccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 422 ERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 422 gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+|.+. |+ +|+||+++|||+ .|++|||||+.
T Consensus 310 gH~~~-V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 310 AHSFA-ITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp SSSSC-EEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred cccCC-EEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 99999 88 788999999999 99999999984
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=288.15 Aligned_cols=281 Identities=11% Similarity=0.076 Sum_probs=224.4
Q ss_pred CCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCe------EEEEecCCCCCccccccceEEEEEEc------C--
Q 046773 137 SDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRL------HVRTFRPQHSDRLGQFSRAVSGIIIT------D-- 202 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~------~~~tl~gh~~~~~~~~s~~V~~i~f~------g-- 202 (453)
.||..+ |+|++|++++||+|+.|++|+|||+.+++ ++.++.+|.. .|.+++|+ +
T Consensus 13 ~~h~~~----i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 13 KAHDAD----IFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS--------GLHHVDVLQAIERDAFE 80 (397)
T ss_dssp SCSSSC----EEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT--------CEEEEEEEEEEETTTEE
T ss_pred hhhhcC----eEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC--------cEEEEEEecccccCCcc
Confidence 489855 89999999999999999999999999998 8889987654 57777764 6
Q ss_pred -CeEEEEeCCCCEEEEEeecCC------cceEEeee-----cceecCceEEEEe----CCCceeeEEEEeeCCCeEEEee
Q 046773 203 -SQLIFATLDGDIHVAVIDDVA------NETRTAHF-----GSVMDDGVLIDFT----GCSRYWVGLYAGLAGRAFHIWD 266 (453)
Q Consensus 203 -~~LasgS~D~tIkvWd~~~~g------~~~~~~~~-----~~v~~~~~~v~Fs----~dg~~~~~LaSgS~D~tIrvWD 266 (453)
+.|++++.|++|++||+.+.. +..+..|. ..+. .++|+ |+++. .|++|+.|++|+|||
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~--~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW----ALKWGASNDRLLSH--RLVATDVKGTTYIWK 154 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE----EEEEECCC----CE--EEEEEETTSCEEEEE
T ss_pred ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE----EEEEeeccCCCCce--EEEEEeCCCcEEEEe
Confidence 789999999999999998722 23344452 3332 48999 99884 278999999999999
Q ss_pred CCC------CcEEecccccCCcceeeeeee-------eeeccceeEEEEcCCceEE-EEcCCcEEEEECCCCceEEEEee
Q 046773 267 RQA------EEVFVGGDLTDHNTVMGWRML-------TEFTEFVGRVRVTSHESAV-ACTSSRVITFDLRNQGMVLGERG 332 (453)
Q Consensus 267 ~~t------g~~~~g~~l~~~~~v~~w~~l-------~~h~~~v~~v~~s~~~~~v-as~d~tIrlWDl~t~~~~~~~~g 332 (453)
+++ ++.+. ..+. ..+ ..|...|.+++|+|++.++ ++.|++|++||+++++++....+
T Consensus 155 ~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 155 FHPFADESNSLTLN----WSPT-----LELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp EESSSSHHHHTTTC----CCCE-----EEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred CCccccccccceee----ccCc-----ceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEec
Confidence 988 54210 0000 133 3477889999999887333 34568999999999887766666
Q ss_pred ---c---cCCeEEEEEEecCCEEEEEeCC---CccccCcceEEEEEcCCCeeEEEEEe-------------cCCCeeEEE
Q 046773 333 ---Y---GRGLYVTSVDVNAEAYIVVENR---ELENQNRRLAIVRRVDTFEEVCRFSL-------------RADRNVNVM 390 (453)
Q Consensus 333 ---~---~~~~~v~~~~~~g~~l~s~s~d---g~~~~~~~~i~Iw~~~tg~~v~~l~~-------------~~~~v~~~~ 390 (453)
| ...+...+|+++++.+++++.| + .++|||+.+++++..+.. |...+..+.
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG-------CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEEEETTEE-------EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred cccccccCCccceEEECCCCCEEEEEecCCCCc-------eEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 6 6566666778889999999998 8 999999999999999988 888899999
Q ss_pred EeeCCCeEEEEeC-CeEEEEECCCCeEEEEec------cc---------------CCceEE--EEecCC----------C
Q 046773 391 GCMNQGYALMCVE-GVIRVWEVEGGEYMYSFR------ER---------------IGEEVI--AFVGDD----------R 436 (453)
Q Consensus 391 ~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~------gh---------------~~~~V~--a~s~d~----------~ 436 (453)
+++++.++++++. ++|+|||+.+++++.++. +| ... |+ +|+||+ +
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-v~~~~~~~~g~~~~~~~~~~~ 377 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG-VFDVKFLKKGWRSGMGADLNE 377 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC-EEEEEEECTTTSBSTTCTTSC
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCc-eeEEEeccccccccccccccc
Confidence 9999999998887 999999999999999999 88 777 87 678998 7
Q ss_pred EEEEE-eCCcEEEEecC
Q 046773 437 HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 437 ~lasg-~D~~IklWDl~ 452 (453)
+|+++ .|++|+|||+.
T Consensus 378 ~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 378 SLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEEEEETTTEEEEEEEE
T ss_pred eEEEecCCCcEEEEEcC
Confidence 99999 99999999974
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-34 Score=278.82 Aligned_cols=279 Identities=10% Similarity=0.090 Sum_probs=224.9
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||..+ |+|++|++ ++||+|+.|++|+|||+.++++++++.+|.. .|.+++|+ ++.|++++.|++
T Consensus 30 ~h~~~----v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 30 GHERP----LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG--------TIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp CCSSC----EEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSS--------CEEEEEECTTSSEEEEEETTTE
T ss_pred Eeece----EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC--------cEEEEEEcCCCCEEEEEeCCCe
Confidence 89855 89999986 6999999999999999999999999998764 57888886 678999999999
Q ss_pred EEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCC-----CeEEEeeCCCCc---EEecccccCCcc
Q 046773 214 IHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG-----RAFHIWDRQAEE---VFVGGDLTDHNT 283 (453)
Q Consensus 214 IkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D-----~tIrvWD~~tg~---~~~g~~l~~~~~ 283 (453)
|++||+.+ + +..+. +...+ ..++|+|++++ |++++.| ++|++||++++. .+.... ..
T Consensus 98 i~iwd~~~-~~~~~~~~-~~~~v----~~~~~~~~~~~---l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~---~~- 164 (369)
T 3zwl_B 98 IKLWDVSN-GQCVATWK-SPVPV----KRVEFSPCGNY---FLAILDNVMKNPGSINIYEIERDSATHELTKVS---EE- 164 (369)
T ss_dssp EEEEETTT-CCEEEEEE-CSSCE----EEEEECTTSSE---EEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC---SS-
T ss_pred EEEEECCC-CcEEEEee-cCCCe----EEEEEccCCCE---EEEecCCccCCCCEEEEEEecCCccceeecccc---cc-
Confidence 99999987 4 22222 33332 24899999996 7788888 999999998765 111000 00
Q ss_pred eeeeeeeeeecc--ceeEEEEcCCc--eEEEEcCCcEEEEECCC-CceEEEEeeccCCeEEEEEEecCCEEEEEeCCCcc
Q 046773 284 VMGWRMLTEFTE--FVGRVRVTSHE--SAVACTSSRVITFDLRN-QGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELE 358 (453)
Q Consensus 284 v~~w~~l~~h~~--~v~~v~~s~~~--~~vas~d~tIrlWDl~t-~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~ 358 (453)
....+..|.. .+.+++|+|++ +++++.|++|++||+++ +..+.....|...+...+|+++++.+++++.|+
T Consensus 165 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-- 240 (369)
T 3zwl_B 165 --PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT-- 240 (369)
T ss_dssp --CSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred --eeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCc--
Confidence 0133455655 89999999876 45556789999999998 455555566766666667788889999999999
Q ss_pred ccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-C--------------eEEEEECCCCeEEEEeccc
Q 046773 359 NQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-G--------------VIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 359 ~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~--------------tIrlWD~~tG~~l~tL~gh 423 (453)
.++|||+.+++.+..+. +...+..+.+++++.++++++. + .|++||+.+++++..+.+|
T Consensus 241 -----~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 241 -----NSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp -----EEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred -----eEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence 99999999999888887 5566889999999999888776 5 8999999999999999999
Q ss_pred CCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 424 IGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 424 ~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+. |. +|+||+++|+++ .|++|+|||+.
T Consensus 315 ~~~-v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 315 FGP-LNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp SSC-EEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred cCc-EEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 998 87 678999999999 99999999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=282.93 Aligned_cols=240 Identities=9% Similarity=0.126 Sum_probs=194.7
Q ss_pred eEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCcee
Q 046773 175 LHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYW 250 (453)
Q Consensus 175 ~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~ 250 (453)
+..++|.+|.. .|.+++|+ +..|++|+.|++|+|||+++ + +..+..|...+. .++|+|++++
T Consensus 4 ~~~~~~~~h~~--------~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~-~~~~~~~~~~~~~v~----~~~~~~~~~~- 69 (304)
T 2ynn_A 4 DIKKTFSNRSD--------RVKGIDFHPTEPWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVR----AGKFIARKNW- 69 (304)
T ss_dssp CCEEEEEEECS--------CEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEE----EEEEEGGGTE-
T ss_pred eeEEeecCCCC--------ceEEEEECCCCCEEEEEcCCCcEEEEECCC-CceeEEeeccCCcEE----EEEEeCCCCE-
Confidence 34678888754 68888886 67899999999999999987 4 455555655443 4899999996
Q ss_pred eEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEE
Q 046773 251 VGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVL 328 (453)
Q Consensus 251 ~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~ 328 (453)
|++||.|++|+|||+++++.+ ..+.+|.+.|.+++|+|++ +++++.|++|||||++++..+.
T Consensus 70 --l~s~s~d~~i~vwd~~~~~~~--------------~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~ 133 (304)
T 2ynn_A 70 --IIVGSDDFRIRVFNYNTGEKV--------------VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133 (304)
T ss_dssp --EEEEETTSEEEEEETTTCCEE--------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE
T ss_pred --EEEECCCCEEEEEECCCCcEE--------------EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh
Confidence 889999999999999999853 3467899999999999876 4556778999999999875544
Q ss_pred E-EeeccCCeEEEEEEe-cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEe-cCCCeeEEEEee--CCCeEEEEeC
Q 046773 329 G-ERGYGRGLYVTSVDV-NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSL-RADRNVNVMGCM--NQGYALMCVE 403 (453)
Q Consensus 329 ~-~~g~~~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~-~~~~v~~~~~~~--~~~~lls~s~ 403 (453)
. +.+|...+...+|+| ++..+++++.|+ +|+|||+.++++...+.. +...+..+.+++ ++.++++++.
T Consensus 134 ~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~-------~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDR-------TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp EEECCCCSCEEEEEECTTCTTEEEEEETTS-------EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred hhhcccCCcEEEEEECCCCCCEEEEEeCCC-------eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 3 467766665556666 457899999999 999999988776655543 345577777776 5568888877
Q ss_pred -CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 404 -GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 404 -~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++|||||+++++++.+|.+|.+. |. +|+|++++|+|+ .|++|+|||+.
T Consensus 207 D~~i~iWd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 207 DLTIKIWDYQTKSCVATLEGHMSN-VSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSC-EEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCeEEEEeCCCCccceeeCCCCCC-EEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 99999999999999999999998 87 678999999999 99999999974
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=297.35 Aligned_cols=269 Identities=13% Similarity=0.198 Sum_probs=224.1
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
+|..+ |.+++|++ ++|++++.|++|++||. ++++++++.+|.. .|.+++|+ ++.|++++.|++
T Consensus 260 ~~~~~----v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~--------~v~~~~~~~~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 260 GHSSS----VNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--------SVWGVAFSPDGQTIASASDDKT 326 (577)
T ss_dssp CCSSC----EEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSS--------CEEEEEECTTSSEEEEEETTSC
T ss_pred cCCCC----EEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCC--------CeEEEEECCCCCEEEEEeCCCe
Confidence 78744 88999986 59999999999999996 5788899998754 57778875 678999999999
Q ss_pred EEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee
Q 046773 214 IHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 214 IkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
|++||.+......+..|...+. .++|+|+|++ |++|+.|++|+|||. +++.+ .++.+|
T Consensus 327 i~~w~~~~~~~~~~~~~~~~v~----~~~~s~~g~~---l~~~~~dg~v~~~~~-~~~~~--------------~~~~~~ 384 (577)
T 2ymu_A 327 VKLWNRNGQHLQTLTGHSSSVW----GVAFSPDGQT---IASASDDKTVKLWNR-NGQLL--------------QTLTGH 384 (577)
T ss_dssp EEEEETTSCEEEEECCCSSCEE----EEEECTTSSE---EEEEETTSEEEEEET-TCCEE--------------EEEECC
T ss_pred EEEEeCCCCeeEEEeCCCCCEE----EEEECCCCCE---EEEEeCCCEEEEEcC-CCCEE--------------EEecCC
Confidence 9999987622444555655443 4899999996 889999999999996 44432 346788
Q ss_pred ccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 294 TEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 294 ~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
...|.+++|+|++ +++++.|++|+|||.. ++++.++.+|...+...+|+|++..+++++.|+ +++||+.
T Consensus 385 ~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~-------~v~~w~~- 455 (577)
T 2ymu_A 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK-------TVKLWNR- 455 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-------EEEEEET-
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCC-------EEEEEEC-
Confidence 8999999999876 4556778999999964 566666777877666667788889999999999 9999996
Q ss_pred CCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEE
Q 046773 372 TFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIH 447 (453)
Q Consensus 372 tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~Ik 447 (453)
+++.+..+..|...+..+.++|++.++++++. ++|+|||. +|+++.++.+|.+. |+ +|+||+++||++ .|++|+
T Consensus 456 ~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~-v~~l~~s~dg~~l~s~~~dg~v~ 533 (577)
T 2ymu_A 456 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS-VRGVAFSPDGQTIASASDDKTVK 533 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSC-EEEEEECTTSSCEEEEETTSEEE
T ss_pred CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCC-EEEEEEcCCCCEEEEEECcCEEE
Confidence 56788888999888999999999999998887 99999995 79999999999998 87 678999999999 999999
Q ss_pred EEecC
Q 046773 448 LWDFG 452 (453)
Q Consensus 448 lWDl~ 452 (453)
|||..
T Consensus 534 lwd~~ 538 (577)
T 2ymu_A 534 LWNRN 538 (577)
T ss_dssp EECTT
T ss_pred EEeCC
Confidence 99963
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=293.53 Aligned_cols=248 Identities=16% Similarity=0.174 Sum_probs=209.4
Q ss_pred EEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEE
Q 046773 167 RLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDF 243 (453)
Q Consensus 167 rlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~F 243 (453)
+.|.... ....+|.+|.. .|.+++|+ +..|++||.|++|+|||+.+.. ..++.+|.+.|. .|+|
T Consensus 92 ~~~~~~~-~~~~~l~gh~~--------~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~----~v~~ 158 (410)
T 1vyh_C 92 KEWIPRP-PEKYALSGHRS--------PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ----DISF 158 (410)
T ss_dssp CCCCCCS-SCSCEEECCSS--------CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE----EEEE
T ss_pred cccccCC-CceEeecccCC--------cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE----EEEE
Confidence 3454432 33557788764 68888886 5689999999999999998722 567778877664 4899
Q ss_pred eCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEEC
Q 046773 244 TGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDL 321 (453)
Q Consensus 244 s~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl 321 (453)
+|+|++ |+|||.|++|+|||+.+++++ +++.+|...|.+++|+|++ +++++.|++|++||+
T Consensus 159 ~~~~~~---l~sgs~D~~i~iwd~~~~~~~--------------~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 159 DHSGKL---LASCSADMTIKLWDFQGFECI--------------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp CTTSSE---EEEEETTSCCCEEETTSSCEE--------------ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCCE---EEEEeCCCeEEEEeCCCCcee--------------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 999986 889999999999999988754 3567889999999999876 456677899999999
Q ss_pred CCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeC-------
Q 046773 322 RNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMN------- 394 (453)
Q Consensus 322 ~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~------- 394 (453)
+++.++.++.+|...+....+++++..+++++.|+ +|+|||+.++++...+..|...+..+.++|+
T Consensus 222 ~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~-------~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 294 (410)
T 1vyh_C 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ-------TVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294 (410)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-------CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGG
T ss_pred CCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC-------eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchh
Confidence 99998888888877766667778889999999999 9999999999999999888888999999885
Q ss_pred -------------CCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 395 -------------QGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 395 -------------~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+.++++++. ++|+|||+.+++++.++.+|.+. |+ +|+|++++|+++ .|++|+|||+.
T Consensus 295 ~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~-v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC-EEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred hhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCc-EEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 457777777 99999999999999999999998 87 678999999999 99999999974
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=276.97 Aligned_cols=273 Identities=12% Similarity=0.077 Sum_probs=205.1
Q ss_pred CCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEe
Q 046773 143 DGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 143 d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~ 219 (453)
|..|+.+|+||+ ++||+|. |++|||||++||+++++++.|.. ...|.+++|+ ++.|++||.|++|+|||+
T Consensus 24 ~d~y~~~l~WS~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~------~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~ 96 (318)
T 4ggc_A 24 NDYYLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQP------GEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96 (318)
T ss_dssp CCTTCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCST------TCCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccccceEEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCC------CCeEEEEEECCCCCEEEEEECCCcEEEeec
Confidence 334567899987 5777765 99999999999999999875432 1368888885 678999999999999999
Q ss_pred ecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccce
Q 046773 220 DDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 220 ~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
++ + +..+.+|...+ ..++++++. |++|+.|+.+++|+..++.... .++.+|...+
T Consensus 97 ~~-~~~~~~~~~h~~~~------~~~~~~~~~---l~s~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 153 (318)
T 4ggc_A 97 QQ-QKRLRNMTSHSARV------GSLSWNSYI---LSSGSRSGHIHHHDVRVAEHHV-------------ATLSGHSQEV 153 (318)
T ss_dssp TT-TEEEEEEECCSSCE------EEEEEETTE---EEEEETTSEEEEEETTSSSCEE-------------EEEECCSSCE
T ss_pred CC-ceeEEEecCccceE------EEeecCCCE---EEEEecCCceEeeecCCCceeE-------------EEEcCccCce
Confidence 88 5 45555565443 355566664 8899999999999998876221 3466888899
Q ss_pred eEEEEcCCc--eEEEEcCCcEEEEECCCCceEEE----EeeccCCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEc
Q 046773 298 GRVRVTSHE--SAVACTSSRVITFDLRNQGMVLG----ERGYGRGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 298 ~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~----~~g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
..+.+++++ +++++.|++|+|||+++++.... ...+...+....+.+.+. .+.+++.+. +++++||+.
T Consensus 154 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~i~lwd~ 228 (318)
T 4ggc_A 154 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-----DRHIRIWNV 228 (318)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT-----TCEEEEEET
T ss_pred EEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC-----CCEEEEEec
Confidence 999998765 45556789999999998753221 223333333334444443 343333322 239999999
Q ss_pred CCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC---CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCC
Q 046773 371 DTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE---GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGT 444 (453)
Q Consensus 371 ~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~---~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~ 444 (453)
.+........ +...+..+.+++++..++++++ ++|+|||+.+++++++|.||.+. |+ +|+||+++|||+ .|+
T Consensus 229 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~-V~~l~~spdg~~l~S~s~D~ 306 (318)
T 4ggc_A 229 CSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR-VLSLTMSPDGATVASAAADE 306 (318)
T ss_dssp TTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSCEEEEETTT
T ss_pred cccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCC-EEEEEEcCCCCEEEEEecCC
Confidence 9887665543 4455888889999998887653 99999999999999999999999 88 678999999999 999
Q ss_pred cEEEEecC
Q 046773 445 NIHLWDFG 452 (453)
Q Consensus 445 ~IklWDl~ 452 (453)
+|||||+.
T Consensus 307 ~v~iWd~~ 314 (318)
T 4ggc_A 307 TLRLWRCF 314 (318)
T ss_dssp EEEEECCS
T ss_pred eEEEEECC
Confidence 99999973
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=284.91 Aligned_cols=274 Identities=13% Similarity=0.156 Sum_probs=209.8
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEec--CCCCCccccccceEEEEEEcC---CeEEEE
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFR--PQHSDRLGQFSRAVSGIIITD---SQLIFA 208 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~--gh~~~~~~~~s~~V~~i~f~g---~~Lasg 208 (453)
.+|..+ |+|++|++ ++||+|+.|++|+|||+.++++...+. +|.. .|.+++|++ ..|+++
T Consensus 70 ~~h~~~----v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 70 SPFDRR----VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD--------AITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp CCCSSC----EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTC--------BEEEEEEETTEEEEEEEE
T ss_pred cCCCCC----EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCC--------ceeEEEeCCCCCCEEEEE
Confidence 378844 89999986 589999999999999999999888876 4433 688898864 689999
Q ss_pred eCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 209 TLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 209 S~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
+.|++|++||+.+.....+..+...- .....++|+|++++ |++|+.|++|+|||++ ++.+ .
T Consensus 138 ~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~---l~~~~~d~~i~i~d~~-~~~~--------------~ 198 (383)
T 3ei3_B 138 SIRGATTLRDFSGSVIQVFAKTDSWD-YWYCCVDVSVSRQM---LATGDSTGRLLLLGLD-GHEI--------------F 198 (383)
T ss_dssp ETTTEEEEEETTSCEEEEEECCCCSS-CCEEEEEEETTTTE---EEEEETTSEEEEEETT-SCEE--------------E
T ss_pred eCCCEEEEEECCCCceEEEeccCCCC-CCeEEEEECCCCCE---EEEECCCCCEEEEECC-CCEE--------------E
Confidence 99999999999862234444333210 01125899999996 8899999999999994 4422 3
Q ss_pred eeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCC----CceEEEEeeccCCeEEEEEEe-cCCEEEEEeCCCcccc
Q 046773 289 MLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRN----QGMVLGERGYGRGLYVTSVDV-NAEAYIVVENRELENQ 360 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t----~~~~~~~~g~~~~~~v~~~~~-~g~~l~s~s~dg~~~~ 360 (453)
++.+|...|.+++|+|++ +++++.|++|++||+++ +.++... +|...+...+|++ +++.+++++.|+
T Consensus 199 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~---- 273 (383)
T 3ei3_B 199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRN---- 273 (383)
T ss_dssp EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSS----
T ss_pred EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCC----
Confidence 466888999999999875 34556789999999998 4554444 5666666666777 889999999999
Q ss_pred CcceEEEEEcCCCeeEEEEEecCCC-----------------eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLRADR-----------------NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE 422 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~~~~-----------------v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g 422 (453)
.++|||+.+++++..+..+... +..+.+++++.+ +++. ++|+|||+.+++++.+|.+
T Consensus 274 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~ 348 (383)
T 3ei3_B 274 ---EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD 348 (383)
T ss_dssp ---EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB
T ss_pred ---cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC
Confidence 9999999998877777655311 222444555555 3334 9999999999999999988
Q ss_pred cC--CceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 423 RI--GEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 423 h~--~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
|. +. +. +|+||+++|+++.|++|+|||+.
T Consensus 349 ~~~~~~-~~~~~~s~~g~~l~s~sd~~i~iw~~~ 381 (383)
T 3ei3_B 349 PNAAGI-ISLNKFSPTGDVLASGMGFNILIWNRE 381 (383)
T ss_dssp TTBCSC-CCEEEECTTSSEEEEEETTEEEEEECC
T ss_pred CCCCce-EEEEEEecCccEEEEecCCcEEEEecC
Confidence 53 33 44 78999999999889999999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=289.02 Aligned_cols=271 Identities=12% Similarity=0.079 Sum_probs=211.1
Q ss_pred CCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEe
Q 046773 143 DGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 143 d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~ 219 (453)
|-.|+.+|++|. ++||.|. |++|+|||+.||++++++..|.. ...|.+|+|+ |+.||+|+.|++|+|||+
T Consensus 104 ~d~y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~------~~~V~sv~fspdg~~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 104 NDYYLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQP------GEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176 (420)
T ss_dssp CCTTCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCST------TCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ccccceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCC------CCcEEEEEECCCCCEEEEEECCCeEEEEEc
Confidence 346678899986 6787775 99999999999999998875321 1368889986 678999999999999999
Q ss_pred ecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccce
Q 046773 220 DDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 220 ~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
++ + +..+.+|...+ .+++++++. |++|+.|+++++||..+..... .++.+|...+
T Consensus 177 ~~-~~~~~~~~~h~~~v------~~~s~~~~~---l~sgs~d~~i~~~d~~~~~~~~-------------~~~~~h~~~~ 233 (420)
T 4gga_A 177 QQ-QKRLRNMTSHSARV------GSLSWNSYI---LSSGSRSGHIHHHDVRVAEHHV-------------ATLSGHSQEV 233 (420)
T ss_dssp TT-TEEEEEECCCSSCE------EEEEEETTE---EEEEETTSEEEEEETTSSSCEE-------------EEEECCSSCE
T ss_pred CC-CcEEEEEeCCCCce------EEEeeCCCE---EEEEeCCCceeEeeecccceee-------------EEecccccce
Confidence 88 5 45555665543 344555554 8999999999999998866221 3567888999
Q ss_pred eEEEEcCCce--EEEEcCCcEEEEECCCCceE----EEEeeccCCeEEEEEEecC-CEEEEEe--CCCccccCcceEEEE
Q 046773 298 GRVRVTSHES--AVACTSSRVITFDLRNQGMV----LGERGYGRGLYVTSVDVNA-EAYIVVE--NRELENQNRRLAIVR 368 (453)
Q Consensus 298 ~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~----~~~~g~~~~~~v~~~~~~g-~~l~s~s--~dg~~~~~~~~i~Iw 368 (453)
..+.+++++. ++++.|+.|++||+.+++.. .....|...+...++.+.+ +.+++++ .|+ +|+||
T Consensus 234 ~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~-------~I~iw 306 (420)
T 4gga_A 234 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR-------HIRIW 306 (420)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC-------EEEEE
T ss_pred eeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC-------EEEEE
Confidence 9999998764 45567899999999987532 2233444444444555544 4455544 456 99999
Q ss_pred EcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC---CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-e
Q 046773 369 RVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE---GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-C 442 (453)
Q Consensus 369 ~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~---~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~ 442 (453)
|+.+++++..+..+ ..+..+.++++++.++++++ ++|+|||+.+++++.+|.||.+. |+ +|+||+++|||+ .
T Consensus 307 d~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~-V~~l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 307 NVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR-VLSLTMSPDGATVASAAA 384 (420)
T ss_dssp ETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSCEEEEET
T ss_pred eCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCC-EEEEEEcCCCCEEEEEec
Confidence 99999998888655 45788899999999987753 99999999999999999999999 88 678999999999 9
Q ss_pred CCcEEEEecC
Q 046773 443 GTNIHLWDFG 452 (453)
Q Consensus 443 D~~IklWDl~ 452 (453)
|++|||||+-
T Consensus 385 D~tvriWdv~ 394 (420)
T 4gga_A 385 DETLRLWRCF 394 (420)
T ss_dssp TTEEEEECCS
T ss_pred CCeEEEEECC
Confidence 9999999973
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=277.97 Aligned_cols=241 Identities=12% Similarity=0.141 Sum_probs=202.1
Q ss_pred eEEEEecCCCCCccccccceEEEEEEc------CCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeC
Q 046773 175 LHVRTFRPQHSDRLGQFSRAVSGIIIT------DSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTG 245 (453)
Q Consensus 175 ~~~~tl~gh~~~~~~~~s~~V~~i~f~------g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~ 245 (453)
...+.+.+|.. .|.+++|+ +..|+|||.|++||||+++... ...+.+|...|. .++|+|
T Consensus 23 ~~~~~~~~H~~--------~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~----~~~~~~ 90 (321)
T 3ow8_A 23 ILFKQEQAHDD--------AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV----SVDISH 90 (321)
T ss_dssp EEEEETTSSSS--------CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE----EEEECS
T ss_pred heeeecccCCC--------cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEE----EEEECC
Confidence 34567777764 68889885 4589999999999999998621 123556766654 589999
Q ss_pred CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEE--EEcCCcEEEEECCC
Q 046773 246 CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV--ACTSSRVITFDLRN 323 (453)
Q Consensus 246 dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v--as~d~tIrlWDl~t 323 (453)
++.. |+|||.|++|+|||+++++.+ ..+..|...+.+++|+|++..+ ++.+++|++||+++
T Consensus 91 ~~~~---l~s~s~D~~i~lWd~~~~~~~--------------~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~ 153 (321)
T 3ow8_A 91 TLPI---AASSSLDAHIRLWDLENGKQI--------------KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153 (321)
T ss_dssp SSSE---EEEEETTSEEEEEETTTTEEE--------------EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT
T ss_pred CCCE---EEEEeCCCcEEEEECCCCCEE--------------EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC
Confidence 9985 889999999999999998853 2355667778899999987543 34578999999999
Q ss_pred CceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC
Q 046773 324 QGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 324 ~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~ 403 (453)
++....+..|...+...+|+|+++.+++++.|+ +|+|||+.+++++.++..|...+..+.++|++.++++++.
T Consensus 154 ~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg-------~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG-------IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp CSEEEEEECSSSCEEEEEECTTSSEEEEEETTS-------CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred CceeEEecCCCceEEEEEECCCCCEEEEEcCCC-------eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence 987776666666666677888999999999999 9999999999999999988888999999999999988887
Q ss_pred -CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 404 -GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 404 -~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++|+|||+.+++++.++.+|.+. |. +|+||+++|+++ .|++|+|||+.
T Consensus 227 dg~i~iwd~~~~~~~~~~~~h~~~-v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAGTLSGHASW-VLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCeEEEEECCCcceeEEEcCCCCc-eEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999998 87 678999999999 99999999975
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=280.73 Aligned_cols=283 Identities=13% Similarity=0.118 Sum_probs=217.5
Q ss_pred CCCCCCCCeEEEEEEecC------CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC------Ce
Q 046773 137 SDVDNPDGLTCRCLTLSD------LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD------SQ 204 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~------~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g------~~ 204 (453)
.||..+ |+|++|++ ..+++++.|++|+|||+.++++++++..|... .+...|.+++|+. ..
T Consensus 15 ~~h~~~----v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~ 87 (366)
T 3k26_A 15 EDHNQP----LFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA---DADENFYTCAWTYDSNTSHPL 87 (366)
T ss_dssp CTTCSC----EEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS---CTTCCEEEEEEEECTTTCCEE
T ss_pred cCCCCc----eEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc---CCCCcEEEEEeccCCCCCCCE
Confidence 389855 89999995 34555555669999999999998888765321 1123577887753 47
Q ss_pred EEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeC-CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCc
Q 046773 205 LIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTG-CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHN 282 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~-dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~ 282 (453)
|++|+.|++|+|||+.+.. +..+..|...+. .++|+| +++. |++|+.|++|+|||+++++...-
T Consensus 88 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~------- 153 (366)
T 3k26_A 88 LAVAGSRGIIRIINPITMQCIKHYVGHGNAIN----ELKFHPRDPNL---LLSVSKDHALRLWNIQTDTLVAI------- 153 (366)
T ss_dssp EEEEETTCEEEEECTTTCCEEEEEESCCSCEE----EEEECSSCTTE---EEEEETTSCEEEEETTTTEEEEE-------
T ss_pred EEEecCCCEEEEEEchhceEeeeecCCCCcEE----EEEECCCCCCE---EEEEeCCCeEEEEEeecCeEEEE-------
Confidence 9999999999999998722 455566666554 489999 8875 88999999999999999884310
Q ss_pred ceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEee--------------------------cc
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERG--------------------------YG 334 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g--------------------------~~ 334 (453)
+..+.+|...|.+++|+|++ +++++.|++|++||+++++++..... ..
T Consensus 154 ----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 154 ----FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp ----ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred ----ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 11125788999999999876 45556789999999998754321111 01
Q ss_pred CCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee--------------EEEEEecCCCeeEEEEeeC--CCeE
Q 046773 335 RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE--------------VCRFSLRADRNVNVMGCMN--QGYA 398 (453)
Q Consensus 335 ~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~--------------v~~l~~~~~~v~~~~~~~~--~~~l 398 (453)
+...|.++.++++.+++++.|+ .++||+..++++ +..+..+...+..+.++++ +.++
T Consensus 230 ~~~~v~~~~~~~~~l~~~~~d~-------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l 302 (366)
T 3k26_A 230 HRNYVDCVRWLGDLILSKSCEN-------AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML 302 (366)
T ss_dssp CSSCCCEEEEETTEEEEECSSS-------EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred CcceEEEEEEcCCEEEEEecCC-------EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence 3345677777799999999999 999999987643 7777778778888999998 8888
Q ss_pred EEEeC-CeEEEEECCCCeE----EEEeccc--CCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 399 LMCVE-GVIRVWEVEGGEY----MYSFRER--IGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 399 ls~s~-~tIrlWD~~tG~~----l~tL~gh--~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++++. ++|+|||+.++++ +.++.+| ... |+ +|+||+++|+++ .|++|+|||+.
T Consensus 303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA-IRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSC-EEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEecCCcEEEEECCCCCCccccceEEcccccCCc-eEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 88877 9999999999864 4588888 566 77 678999999999 99999999984
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=283.27 Aligned_cols=235 Identities=12% Similarity=-0.003 Sum_probs=184.7
Q ss_pred EEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEec----CCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFR----PQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~----gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~ 219 (453)
|++++|++ ++|++|+.|++|||||+++++++.+++ +|.. .|.+++|+ ++.|++||.|++|+|||+
T Consensus 85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~--------~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDD--------IVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSS--------CEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCC--------CEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 89999997 589999999999999999999876543 5543 68889885 679999999999999999
Q ss_pred ecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccce
Q 046773 220 DDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 220 ~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
++ + +.++.+|.+.|. .++|+|+++. .|+|||.|++|+|||+++++...- -....|...+
T Consensus 157 ~~-~~~~~~~~~h~~~V~----~~~~~~~~~~--~l~s~s~D~~v~iwd~~~~~~~~~------------~~~~~~~~~~ 217 (344)
T 4gqb_B 157 AQ-QVVLSSYRAHAAQVT----CVAASPHKDS--VFLSCSEDNRILLWDTRCPKPASQ------------IGCSAPGYLP 217 (344)
T ss_dssp TT-TEEEEEECCCSSCEE----EEEECSSCTT--EEEEEETTSCEEEEETTSSSCEEE------------CC----CCCE
T ss_pred CC-CcEEEEEcCcCCceE----EEEecCCCCC--ceeeeccccccccccccccceeee------------eecceeeccc
Confidence 88 5 566777877664 4899999875 378999999999999999883210 0012344568
Q ss_pred eEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEcCCC
Q 046773 298 GRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 298 ~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
.+++|+|+. +++++.|++|+|||+++++++.++.+|...+...+|+|++. .++++|.|+ +|+|||..++
T Consensus 218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~-------~i~vwd~~~~ 290 (344)
T 4gqb_B 218 TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC-------SLAVLDSSLS 290 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS-------CEEEECTTCC
T ss_pred eeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC-------eEEEEECCCC
Confidence 899998743 34456789999999999988888888877766666777774 588999999 9999999998
Q ss_pred eeEEEEEecCCCeeEEEEeeCCCeEE-EEeC-CeEEEEECCCCeE
Q 046773 374 EEVCRFSLRADRNVNVMGCMNQGYAL-MCVE-GVIRVWEVEGGEY 416 (453)
Q Consensus 374 ~~v~~l~~~~~~v~~~~~~~~~~~ll-s~s~-~tIrlWD~~tG~~ 416 (453)
+++ .+..|.+.|.++.|+|++.+++ +++. ++|++|++.+...
T Consensus 291 ~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 291 ELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred cEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 765 4678888899999999988765 5665 9999999987543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=307.75 Aligned_cols=260 Identities=13% Similarity=0.044 Sum_probs=191.9
Q ss_pred EEEEEeCCCcEEEEECCCCeEE----EEecCCCCCccccccceEEEEEEcC--------CeEEEEeCCCCEEEEEeecCC
Q 046773 156 YLACGFADGAVRLFDLTTRLHV----RTFRPQHSDRLGQFSRAVSGIIITD--------SQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~----~tl~gh~~~~~~~~s~~V~~i~f~g--------~~LasgS~D~tIkvWd~~~~g 223 (453)
.|||+|+|++|||||+.++++. .++.+|.. .|.+++|++ ..||+||.|++|+|||+....
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~--------~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG--------EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCC--------SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCC--------cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 3566789999999999998763 45554433 578888864 489999999999999997621
Q ss_pred c------------ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 224 N------------ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 224 ~------------~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
. .++.+|...+. .++|+|++ .|++||.|++|+|||+++++.. ..++.
T Consensus 247 ~~~~~~~~~~~p~~~l~~h~~~v~----sv~~s~~~----~lasgs~DgtV~lWD~~~~~~~-------------~~~~~ 305 (524)
T 2j04_B 247 TDVHVFKMCEKPSLTLSLADSLIT----TFDFLSPT----TVVCGFKNGFVAEFDLTDPEVP-------------SFYDQ 305 (524)
T ss_dssp SSSSEEECCCSCSEEECCTTTCEE----EEEESSSS----EEEEEETTSEEEEEETTBCSSC-------------SEEEE
T ss_pred cccccceeecCceEEEEcCCCCEE----EEEecCCC----eEEEEeCCCEEEEEECCCCCCc-------------eEEee
Confidence 1 13344544443 48999875 3899999999999999987521 02467
Q ss_pred eeccceeEE--EEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCC--eEEEEEEecCCEEEEEeCCCccccCcce
Q 046773 292 EFTEFVGRV--RVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRG--LYVTSVDVNAEAYIVVENRELENQNRRL 364 (453)
Q Consensus 292 ~h~~~v~~v--~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~--~~v~~~~~~g~~l~s~s~dg~~~~~~~~ 364 (453)
+|..+|.+| .|++++ ++++|.|++|||||+++++++.++.+|... +...+|+|++..+++++.|+ +
T Consensus 306 ~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~-------t 378 (524)
T 2j04_B 306 VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGAS-------S 378 (524)
T ss_dssp CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSS-------E
T ss_pred cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCC-------c
Confidence 889999999 467754 456678899999999998776665555432 33467888888899999888 9
Q ss_pred EEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC------------------------------
Q 046773 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG------------------------------ 413 (453)
Q Consensus 365 i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t------------------------------ 413 (453)
|+|||+.++.++.++..|.+.|.+++++|++.++++++. ++|+|||+..
T Consensus 379 v~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 379 LRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp EEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred EEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 999999999998889999999999999999999988887 9999987421
Q ss_pred --------------CeEEEEecccCCceEE--EEecCCC---EEEEE-eCCcEEEEecC
Q 046773 414 --------------GEYMYSFRERIGEEVI--AFVGDDR---HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 414 --------------G~~l~tL~gh~~~~V~--a~s~d~~---~lasg-~D~~IklWDl~ 452 (453)
|+++.+|.+|.+. |+ +|+|++. +||+| .||+||||+++
T Consensus 459 ~~~~~~~~~~~~~~g~~~~~l~gh~~~-V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 459 RIDSSYEVYPLTVNDVSKAKIDAHGIN-ITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp EECCCCCCCC-------------CCCS-CCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred EccCCceecccccCCcceeeecCCCce-EEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 3455667778777 76 7889854 99999 99999999986
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=256.90 Aligned_cols=267 Identities=15% Similarity=0.150 Sum_probs=211.7
Q ss_pred CCCCCCCCeEEEEEEec-CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 137 SDVDNPDGLTCRCLTLS-DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs-~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
.||.++ |+|++|. +++||+|+.|++|+|||+.++++...+.+|.. .|.+++|+ ++.|++|+.|++
T Consensus 15 ~~h~~~----v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 15 KGHDQD----VRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG--------FLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp CCCSSC----EEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSS--------CEEEEEEETTTTEEEEEETTSC
T ss_pred hCCCCC----cEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCc--------cEEEEEECCCCCEEEEecCCCe
Confidence 489854 7888883 57999999999999999999999999987654 57778775 678999999999
Q ss_pred EEEEEeecCC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 214 IHVAVIDDVA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 214 IkvWd~~~~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
|++|++.... ...+..|...+. .++|+ ++ .|++|+.|++|++|| +++.. ..
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~--~~---~l~~~~~d~~i~~~d--~~~~~--------------~~ 137 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVC----SLSFQ--DG---VVISGSWDKTAKVWK--EGSLV--------------YN 137 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEE----EEEEE--TT---EEEEEETTSEEEEEE--TTEEE--------------EE
T ss_pred EEEEEeeecCCCCcccchhhcccCEE----EEEec--CC---EEEEEeCCCCEEEEc--CCcEE--------------Ee
Confidence 9999986521 344555655543 36774 44 388999999999999 44422 23
Q ss_pred eeeeccceeEEEEcC---CceEEEEcCCcEEEEECCCCceEEEEee-ccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 290 LTEFTEFVGRVRVTS---HESAVACTSSRVITFDLRNQGMVLGERG-YGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 290 l~~h~~~v~~v~~s~---~~~~vas~d~tIrlWDl~t~~~~~~~~g-~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
+..|..++.++.+.+ +.+++++.|++|++||.. +....... |...+...++++++. +++++.++ .+
T Consensus 138 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg-------~i 207 (313)
T 3odt_A 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG-------LI 207 (313)
T ss_dssp EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE-EEEEETTS-------EE
T ss_pred cccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe-EEEccCCC-------eE
Confidence 567888999998864 335666778999999944 44444444 555555666777776 89999999 99
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEe
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASC 442 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~ 442 (453)
+|||..+++++..+..|...+..+.+++++ ++++++. ++|+|||+.+++++.++..|.+. |. +++||+++++++.
T Consensus 208 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~ 285 (313)
T 3odt_A 208 KLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAIS-IWSVDCMSNGDIIVGSS 285 (313)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSC-EEEEEECTTSCEEEEET
T ss_pred EEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCce-EEEEEEccCCCEEEEeC
Confidence 999999999999999898889999999988 5677766 99999999999999999999888 77 6779998655449
Q ss_pred CCcEEEEecC
Q 046773 443 GTNIHLWDFG 452 (453)
Q Consensus 443 D~~IklWDl~ 452 (453)
|++|+|||+.
T Consensus 286 dg~i~iw~~~ 295 (313)
T 3odt_A 286 DNLVRIFSQE 295 (313)
T ss_dssp TSCEEEEESC
T ss_pred CCcEEEEeCC
Confidence 9999999975
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=270.12 Aligned_cols=277 Identities=10% Similarity=0.099 Sum_probs=217.8
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCe--EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRL--HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLD 211 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D 211 (453)
.|.++ |+|++|++ ++||+|+.|++|+|||+.+++ +++++.+|.. .|.+++|+ ++.|++++.|
T Consensus 6 ~~~~~----i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 6 FLVEP----ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG--------QVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp SCSSC----CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS--------CEEEEEEETTTTEEEEEETT
T ss_pred ccCCC----eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC--------cccEEEEeCCCCEEEEEcCC
Confidence 36644 78999976 699999999999999999998 8999988654 57788875 7789999999
Q ss_pred CCEEEEEeecCC--cceE--EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee
Q 046773 212 GDIHVAVIDDVA--NETR--TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW 287 (453)
Q Consensus 212 ~tIkvWd~~~~g--~~~~--~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w 287 (453)
++|++||+++ + ...+ ..|...+. .++|+|++++ |++|+.|++|+|||+++++...- . -
T Consensus 74 g~i~vwd~~~-~~~~~~~~~~~~~~~v~----~~~~~~~~~~---l~~~~~d~~v~i~d~~~~~~~~~--------~--~ 135 (372)
T 1k8k_C 74 RNAYVWTLKG-RTWKPTLVILRINRAAR----CVRWAPNEKK---FAVGSGSRVISICYFEQENDWWV--------C--K 135 (372)
T ss_dssp SCEEEEEEET-TEEEEEEECCCCSSCEE----EEEECTTSSE---EEEEETTSSEEEEEEETTTTEEE--------E--E
T ss_pred CeEEEEECCC-CeeeeeEEeecCCCcee----EEEECCCCCE---EEEEeCCCEEEEEEecCCCccee--------e--e
Confidence 9999999987 4 1122 22433332 4899999986 88999999999999998761100 0 0
Q ss_pred eeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECC------------------CCceEEEEeeccCCeEEEEEEecCC
Q 046773 288 RMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLR------------------NQGMVLGERGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~------------------t~~~~~~~~g~~~~~~v~~~~~~g~ 347 (453)
.....|...|.+++|+|++ +++++.|++|++||++ +++++....+|...+...+++++++
T Consensus 136 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 215 (372)
T ss_dssp EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence 1235678899999999876 4455678999999954 5666665566666666666778888
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCC--Ce--EE------
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEG--GE--YM------ 417 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~t--G~--~l------ 417 (453)
.+++++.|+ .++|||+.+++++..+..+...+..+.+++++.+++++.++.|++||+.+ |+ ++
T Consensus 216 ~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 288 (372)
T 1k8k_C 216 RVAWVSHDS-------TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVP 288 (372)
T ss_dssp EEEEEETTT-------EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC
T ss_pred EEEEEeCCC-------EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCcc
Confidence 999999999 99999999999999999888889999999998877777559999999988 53 11
Q ss_pred ------------------------------EEe-cccCCceEEEE--e-cCC---CEEEEE-eCCcEEEEecC
Q 046773 418 ------------------------------YSF-RERIGEEVIAF--V-GDD---RHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 418 ------------------------------~tL-~gh~~~~V~a~--s-~d~---~~lasg-~D~~IklWDl~ 452 (453)
..+ .+|.+. |+++ . +++ ++|+|+ .|++|+|||+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 289 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS-VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp --------CHHHHHHHCCCCC---------CCCSSSSSSC-EEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred ccchhhhcchhhhhhhcccccccccCccccccccccccCC-cceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 334 489888 8854 3 677 899999 99999999973
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=269.91 Aligned_cols=238 Identities=8% Similarity=0.040 Sum_probs=184.3
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCC--CeEEEEecCCCCCccccccceEEEEEEc----CCeEEEE
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTT--RLHVRTFRPQHSDRLGQFSRAVSGIIIT----DSQLIFA 208 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~t--g~~~~tl~gh~~~~~~~~s~~V~~i~f~----g~~Lasg 208 (453)
.||.++ |++++|++ ++|||||.|++|||||+++ ++++++|.+|.. .|.+++|+ ++.|+||
T Consensus 6 ~~h~~~----V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~--------~V~~v~~s~~~~g~~l~s~ 73 (297)
T 2pm7_B 6 NAHNEM----IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG--------PVWRVDWAHPKFGTILASC 73 (297)
T ss_dssp CSCSSC----EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS--------CEEEEEECCGGGCSEEEEE
T ss_pred cCCcCc----eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC--------CeEEEEecCCCcCCEEEEE
Confidence 489844 88999985 6999999999999999974 478899999765 68889884 6789999
Q ss_pred eCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCC--CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 209 TLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGC--SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 209 S~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~d--g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
|.|++|+|||+++.. +..+.+|...+. .|+|+|+ |++ |++|+.|++|+|||++++....
T Consensus 74 s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~----~v~~~p~~~g~~---l~s~s~d~~v~~wd~~~~~~~~--------- 137 (297)
T 2pm7_B 74 SYDGKVMIWKEENGRWSQIAVHAVHSASVN----SVQWAPHEYGPM---LLVASSDGKVSVVEFKENGTTS--------- 137 (297)
T ss_dssp ETTTEEEEEEBSSSCBCCCEEECCCSSCEE----EEEECCGGGCSE---EEEEETTSEEEEEEBCSSSCBC---------
T ss_pred cCCCEEEEEEcCCCceEEEEEeecCCCcee----EEEeCcCCCCcE---EEEEECCCcEEEEEecCCCcee---------
Confidence 999999999998621 233445655543 4899998 765 8899999999999998764110
Q ss_pred eeeeeeeeeeccceeEEEEcCC---------------ceEEEEcCCcEEEEECCCCc----eEEEEeeccCCeEEEEEEe
Q 046773 284 VMGWRMLTEFTEFVGRVRVTSH---------------ESAVACTSSRVITFDLRNQG----MVLGERGYGRGLYVTSVDV 344 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s~~---------------~~~vas~d~tIrlWDl~t~~----~~~~~~g~~~~~~v~~~~~ 344 (453)
-..+.+|...|.+++|+|+ .+++++.|++|||||++++. +..++.+|...+...+|+|
T Consensus 138 ---~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp 214 (297)
T 2pm7_B 138 ---PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (297)
T ss_dssp ---CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred ---eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC
Confidence 0245688899999999985 35666788999999998865 3344567766555555666
Q ss_pred cC---CEEEEEeCCCccccCcceEEEEEcCCCe--e-EEEE--EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 345 NA---EAYIVVENRELENQNRRLAIVRRVDTFE--E-VCRF--SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 345 ~g---~~l~s~s~dg~~~~~~~~i~Iw~~~tg~--~-v~~l--~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
++ ..+++++.|+ +|+||+.++++ . ...+ ..++..+..+.++|++.++++++. ++|+||+..
T Consensus 215 ~~~~~~~las~s~D~-------~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 215 TVLLRSYMASVSQDR-------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCSSSEEEEEEETTS-------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCceEEEEEECCC-------cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 63 6789999999 99999998753 1 1222 234567889999999999988887 999999987
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-32 Score=277.11 Aligned_cols=269 Identities=13% Similarity=0.193 Sum_probs=213.5
Q ss_pred CCCCCCCCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc----CCeEEEEeCC
Q 046773 137 SDVDNPDGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT----DSQLIFATLD 211 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~----g~~LasgS~D 211 (453)
.||..+ |+|++|++ .+|+||+.|++|+|||++++++++++.+|.. .|.+++|. +..|++|+.|
T Consensus 159 ~~h~~~----V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~--------~v~~l~~~~~~~~~~l~s~s~d 226 (464)
T 3v7d_B 159 SGHDGG----VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNS--------TVRCLDIVEYKNIKYIVTGSRD 226 (464)
T ss_dssp CCCSSC----EEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEEEEEEEESSSCEEEEEEETT
T ss_pred eCCCcC----EEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCC--------ccEEEEEecCCCCCEEEEEcCC
Confidence 378854 89999986 4999999999999999999999999998754 57777764 4679999999
Q ss_pred CCEEEEEeecCC-c-----------------------ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeC
Q 046773 212 GDIHVAVIDDVA-N-----------------------ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDR 267 (453)
Q Consensus 212 ~tIkvWd~~~~g-~-----------------------~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~ 267 (453)
++|++||+.+.. . ..+.+|... ...+++++++ |++|+.|++|+|||+
T Consensus 227 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~---l~~~~~d~~i~vwd~ 297 (464)
T 3v7d_B 227 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS------VRTVSGHGNI---VVSGSYDNTLIVWDV 297 (464)
T ss_dssp SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC------EEEEEEETTE---EEEEETTSCEEEEET
T ss_pred CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce------EEEEcCCCCE---EEEEeCCCeEEEEEC
Confidence 999999997621 1 112223322 2456777775 889999999999999
Q ss_pred CCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEec
Q 046773 268 QAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN 345 (453)
Q Consensus 268 ~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~ 345 (453)
++++.+ ..+.+|...|.+++|+|++ +++++.|++|++||+++++++.++.+|. ..|.++.++
T Consensus 298 ~~~~~~--------------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~ 361 (464)
T 3v7d_B 298 AQMKCL--------------YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT--ALVGLLRLS 361 (464)
T ss_dssp TTTEEE--------------EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEC
T ss_pred CCCcEE--------------EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC--CcEEEEEEc
Confidence 998853 3466788999999999875 4566778999999999998877776664 456788888
Q ss_pred CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEE-ecccC
Q 046773 346 AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYS-FRERI 424 (453)
Q Consensus 346 g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~t-L~gh~ 424 (453)
++.+++++.|+ +++|||+.+++....+. +...+..+.+++++.+++++++++|+|||+++|++++. +.+|.
T Consensus 362 ~~~l~s~s~dg-------~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~ 433 (464)
T 3v7d_B 362 DKFLVSAAADG-------SIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDA 433 (464)
T ss_dssp SSEEEEEETTS-------EEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTC
T ss_pred CCEEEEEeCCC-------cEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCC
Confidence 99999999999 99999999987665543 44446677888999988888889999999999999987 56777
Q ss_pred CceEEEEecCCCEEEEE--eCCcEE--EEec
Q 046773 425 GEEVIAFVGDDRHVAAS--CGTNIH--LWDF 451 (453)
Q Consensus 425 ~~~V~a~s~d~~~lasg--~D~~Ik--lWDl 451 (453)
+. |++++++++.++++ .|+.+. +|||
T Consensus 434 ~~-v~~v~~~~~~l~~~~~~~g~~~i~~ldf 463 (464)
T 3v7d_B 434 DQ-IWSVNFKGKTLVAAVEKDGQSFLEILDF 463 (464)
T ss_dssp SE-EEEEEEETTEEEEEEEETTEEEEEEEEC
T ss_pred Cc-EEEEEecCCEEEEEEEeCCeEEEEEeec
Confidence 77 99888888877655 676554 4555
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=274.92 Aligned_cols=269 Identities=8% Similarity=0.043 Sum_probs=219.6
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
|+|++|++ ++||+|+.|++|+||| .+++++.++.+|.. .|.+++|+ ++.|++++.|++|++||+.+
T Consensus 111 v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~- 180 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRA--------PIVSVKWNKDGTHIISMDVENVTILWNVIS- 180 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCS--------CEEEEEECTTSSEEEEEETTCCEEEEETTT-
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCc--------cEEEEEECCCCCEEEEEecCCeEEEEECCC-
Confidence 89999986 6999999999999999 78899999987654 57888885 67899999999999999987
Q ss_pred C--cceEEeeecce--------ecC---ceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 223 A--NETRTAHFGSV--------MDD---GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 223 g--~~~~~~~~~~v--------~~~---~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
+ ...+..+.... ..+ ...+.|+|++. +++++.|+.|++||+++++.. ..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~i~~~d~~~~~~~--------------~~ 242 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK----FVIPGPKGAIFVYQITEKTPT--------------GK 242 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEETTE----EEEECGGGCEEEEETTCSSCS--------------EE
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE----EEEEcCCCeEEEEEcCCCcee--------------ee
Confidence 4 22232232210 000 12478999875 678999999999999988732 23
Q ss_pred eeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEE
Q 046773 290 LTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIV 367 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~I 367 (453)
+.+|...|.+++|+|++ +++++.|++|++||+++++++....+|...+...++++++ .+++++.|+ .++|
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~-------~i~i 314 (425)
T 1r5m_A 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDG-------SVRL 314 (425)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTS-------EEEE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCC-------cEEE
Confidence 55788899999999876 4555678999999999987766666666655556667777 899999999 9999
Q ss_pred EEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCe--------------------EEEEecccCC-
Q 046773 368 RRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGE--------------------YMYSFRERIG- 425 (453)
Q Consensus 368 w~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~--------------------~l~tL~gh~~- 425 (453)
|++.+++++..+..+...+..+.+++++.++++++. ++|+|||+.+++ ++.++.+|..
T Consensus 315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (425)
T 1r5m_A 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDN 394 (425)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCC
T ss_pred EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccC
Confidence 999999999999888888999999999999988887 999999999998 9999999976
Q ss_pred -ceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 426 -EEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 426 -~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
. |. +|+||+++|+++ .|++|+|||+.
T Consensus 395 ~~-v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 395 DY-IFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CC-EEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred Cc-eEEEEccCCCceEEEEecCceEEEEeec
Confidence 6 87 677999999999 99999999986
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=283.64 Aligned_cols=279 Identities=14% Similarity=0.159 Sum_probs=213.5
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCC----CeEEEEecCCCCCccccccceEEEEEEc---CCeEEEE
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTT----RLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFA 208 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~t----g~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~Lasg 208 (453)
+|..+ |+|++|++ ++||+|+.|++|+|||+.+ .+++.++.+|.. .|.+++|+ +..|+++
T Consensus 65 ~~~~~----v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~~l~s~ 132 (416)
T 2pm9_A 65 QVDSK----FNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS--------SVKTVKFNAKQDNVLASG 132 (416)
T ss_dssp CCSSC----EEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS--------CCCEEEECSSSTTBEEEE
T ss_pred ecCCc----eEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc--------ceEEEEEcCCCCCEEEEE
Confidence 46533 88999976 6999999999999999998 468899988764 57778886 5689999
Q ss_pred eCCCCEEEEEeecCCc------ceE-----EeeecceecCceEEEEeCC-CceeeEEEEeeCCCeEEEeeCCCCcEEecc
Q 046773 209 TLDGDIHVAVIDDVAN------ETR-----TAHFGSVMDDGVLIDFTGC-SRYWVGLYAGLAGRAFHIWDRQAEEVFVGG 276 (453)
Q Consensus 209 S~D~tIkvWd~~~~g~------~~~-----~~~~~~v~~~~~~v~Fs~d-g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~ 276 (453)
+.|++|++||+.+ +. ..+ ..|...+. .++|+|+ ++. |++++.|++|+|||+++++...-
T Consensus 133 ~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~---l~~~~~dg~v~iwd~~~~~~~~~- 203 (416)
T 2pm9_A 133 GNNGEIFIWDMNK-CTESPSNYTPLTPGQSMSSVDEVI----SLAWNQSLAHV---FASAGSSNFASIWDLKAKKEVIH- 203 (416)
T ss_dssp CSSSCEEBCBTTT-TSSCTTTCCCBCCCCSCCSSCCCC----EEEECSSCTTE---EEEESSSSCEEEEETTTTEEEEE-
T ss_pred cCCCeEEEEECCC-CccccccccccccccccCCCCCee----EEEeCCCCCcE---EEEEcCCCCEEEEECCCCCcceE-
Confidence 9999999999987 31 111 23444332 5899999 554 88999999999999999884310
Q ss_pred cccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCC---cEEEEECCCCc-eEEEEe-eccCCeEEEEEEe-cCC
Q 046773 277 DLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSS---RVITFDLRNQG-MVLGER-GYGRGLYVTSVDV-NAE 347 (453)
Q Consensus 277 ~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~---tIrlWDl~t~~-~~~~~~-g~~~~~~v~~~~~-~g~ 347 (453)
+..+ ....+|...+.+++|+|++ +++++.|+ +|++||+++++ ++..+. +|...+...+|++ +++
T Consensus 204 -~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 276 (416)
T 2pm9_A 204 -LSYT------SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH 276 (416)
T ss_dssp -ECCC------CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS
T ss_pred -Eecc------ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC
Confidence 0000 0112347889999999875 34445666 99999999874 333345 6666555556666 778
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCC-CeEEEEeC-CeEEEEECCCCeEEEEecc---
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQ-GYALMCVE-GVIRVWEVEGGEYMYSFRE--- 422 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~-~~lls~s~-~tIrlWD~~tG~~l~tL~g--- 422 (453)
.+++++.|+ +++||++.+++++..+..|...+..+.++|++ .++++++. ++|+|||+.+++.......
T Consensus 277 ~l~s~~~dg-------~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~ 349 (416)
T 2pm9_A 277 LLLSSGRDN-------TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET 349 (416)
T ss_dssp CEEEEESSS-------EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----
T ss_pred eEEEEeCCC-------CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccc
Confidence 999999999 99999999999999999998889999999998 67777666 9999999998765433221
Q ss_pred --------------------------------cCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 423 --------------------------------RIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 423 --------------------------------h~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|... |. +|+|||++|+++ .|++|+|||+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 350 KQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP-SPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp -----------------CCSCCCSSCCCCCSTTCCC-SCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred cccCCcccccccccccccccccccccccCCccccCC-ccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 3444 53 899999999999 99999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=269.38 Aligned_cols=246 Identities=13% Similarity=0.118 Sum_probs=202.4
Q ss_pred CeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCcee
Q 046773 174 RLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYW 250 (453)
Q Consensus 174 g~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~ 250 (453)
.++.++|+||.. .|.+++|+ ++.|++||.|++|+|||+.+.. ...+..|...+. .++|+|+|++
T Consensus 45 ~~~~~~l~gH~~--------~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~----~~~~s~~~~~- 111 (340)
T 1got_B 45 MRTRRTLRGHLA--------KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM----TCAYAPSGNY- 111 (340)
T ss_dssp CCEEEEECCCSS--------CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEE----EEEECTTSSE-
T ss_pred chhheeecCCCC--------ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEE----EEEECCCCCE-
Confidence 356789999765 68888885 6689999999999999987722 445555655543 4899999996
Q ss_pred eEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEEcCCcEEEEECCCCceEEE
Q 046773 251 VGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVACTSSRVITFDLRNQGMVLG 329 (453)
Q Consensus 251 ~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas~d~tIrlWDl~t~~~~~~ 329 (453)
|++|+.|++|+|||+.+++. .......+.+|.+.|.++.|++++. ++++.|++|++||+++++++.+
T Consensus 112 --l~s~~~d~~v~iw~~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~ 179 (340)
T 1got_B 112 --VACGGLDNICSIYNLKTREG----------NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179 (340)
T ss_dssp --EEEEETTCEEEEEETTTCSB----------SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred --EEEEeCCCeEEEEECccCCC----------cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEE
Confidence 88999999999999988641 0001145778999999999987664 5556789999999999988777
Q ss_pred EeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEE
Q 046773 330 ERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRV 408 (453)
Q Consensus 330 ~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrl 408 (453)
+.+|...+...+++|++..+++++.|+ +|+|||+.+++++.++..|...+..+.++|++.++++++. ++|+|
T Consensus 180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~-------~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~i 252 (340)
T 1got_B 180 FTGHTGDVMSLSLAPDTRLFVSGACDA-------SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTS-------CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EcCCCCceEEEEECCCCCEEEEEeCCC-------cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 777877766667788888999999999 9999999999999999999988999999999999998887 99999
Q ss_pred EECCCCeEEEEeccc--CCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 409 WEVEGGEYMYSFRER--IGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 409 WD~~tG~~l~tL~gh--~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
||+.+++++.++..+ ... |. +|+||+++|++| .|++|+|||+.
T Consensus 253 wd~~~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 253 FDLRADQELMTYSHDNIICG-ITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp EETTTTEEEEEECCTTCCSC-EEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EECCCCcEEEEEccCCcccc-eEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 999999998887532 234 66 678999999999 99999999974
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=261.06 Aligned_cols=269 Identities=10% Similarity=0.167 Sum_probs=213.3
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEE---Eec--CCCCCccccccceEEEEEEc--CCeEEEE
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVR---TFR--PQHSDRLGQFSRAVSGIIIT--DSQLIFA 208 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~---tl~--gh~~~~~~~~s~~V~~i~f~--g~~Lasg 208 (453)
+|.++ |+|++|++ ++|++++ |++|+|||+.+++... ++. +|. ..|.+++|+ ++.|+++
T Consensus 49 ~h~~~----v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~ 115 (337)
T 1gxr_A 49 NHGEV----VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD--------NYIRSCKLLPDGCTLIVG 115 (337)
T ss_dssp CCSSC----CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT--------SBEEEEEECTTSSEEEEE
T ss_pred cCCCc----eEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCC--------CcEEEEEEcCCCCEEEEE
Confidence 68744 78999986 6999999 9999999999887433 333 333 267888886 6689999
Q ss_pred eCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCccee
Q 046773 209 TLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVM 285 (453)
Q Consensus 209 S~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~ 285 (453)
+.|++|++||+++.. ...+..|...+. .++|+|+++. |++++.|++|++||+++++..
T Consensus 116 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~---l~~~~~dg~v~~~d~~~~~~~------------ 176 (337)
T 1gxr_A 116 GEASTLSIWDLAAPTPRIKAELTSSAPACY----ALAISPDSKV---CFSCCSDGNIAVWDLHNQTLV------------ 176 (337)
T ss_dssp ESSSEEEEEECCCC--EEEEEEECSSSCEE----EEEECTTSSE---EEEEETTSCEEEEETTTTEEE------------
T ss_pred cCCCcEEEEECCCCCcceeeecccCCCceE----EEEECCCCCE---EEEEeCCCcEEEEeCCCCcee------------
Confidence 999999999998722 122333433332 4899999986 789999999999999998743
Q ss_pred eeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcc
Q 046773 286 GWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRR 363 (453)
Q Consensus 286 ~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~ 363 (453)
..+.+|...+.+++++|++ +++++.|++|++||+++++++... .+.......+++++++.+++++.++
T Consensus 177 --~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~------- 246 (337)
T 1gxr_A 177 --RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESS------- 246 (337)
T ss_dssp --EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTS-------
T ss_pred --eeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCC-------
Confidence 3456788899999999876 455567899999999998765554 3444555566778889999999999
Q ss_pred eEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEE
Q 046773 364 LAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAA 440 (453)
Q Consensus 364 ~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~las 440 (453)
.+++|+..+++. ..+..+...+..+.+++++.++++++. ++|++||+.+++++..+ .|... |. +|+||+++|++
T Consensus 247 ~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~-v~~~~~s~~~~~l~~ 323 (337)
T 1gxr_A 247 NVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSS-VLSCDISVDDKYIVT 323 (337)
T ss_dssp CEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSC-EEEEEECTTSCEEEE
T ss_pred cEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCc-EEEEEECCCCCEEEE
Confidence 999999998765 356667778999999999999988887 99999999999988654 46666 76 67899999999
Q ss_pred E-eCCcEEEEec
Q 046773 441 S-CGTNIHLWDF 451 (453)
Q Consensus 441 g-~D~~IklWDl 451 (453)
+ .|++|+|||+
T Consensus 324 ~~~dg~i~iw~~ 335 (337)
T 1gxr_A 324 GSGDKKATVYEV 335 (337)
T ss_dssp EETTSCEEEEEE
T ss_pred ecCCCeEEEEEE
Confidence 9 9999999997
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=279.87 Aligned_cols=273 Identities=13% Similarity=0.095 Sum_probs=202.7
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCC---Ce---EEEEecCCCCCccccccceEEEEEEc--CCeE
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTT---RL---HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQL 205 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~t---g~---~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~L 205 (453)
.+|.++ |+|++|++ ++|||||.|++|||||+.+ ++ +..++. |.. .|.+++|+ ++.|
T Consensus 60 ~~h~~~----V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~--------~v~~~~~~~~~~~l 126 (437)
T 3gre_A 60 ENEPNS----ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSS--------TVTQITMIPNFDAF 126 (437)
T ss_dssp TTTTSC----EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSS--------CEEEEEECTTSSEE
T ss_pred cCCCCc----eEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-CCC--------CEEEEEEeCCCCEE
Confidence 478744 88999987 5999999999999999988 54 333432 332 68889885 5789
Q ss_pred EEEeCCCCEEEEEeec--CC--cceEEeeecc-e------ecC-ceEEE--EeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 206 IFATLDGDIHVAVIDD--VA--NETRTAHFGS-V------MDD-GVLID--FTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 206 asgS~D~tIkvWd~~~--~g--~~~~~~~~~~-v------~~~-~~~v~--Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
++|+.|++|+|||++. .+ ......|.-. + ..+ ...+. ++|++++ |++|+.|++|+|||+++++
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~d~~i~iwd~~~~~ 203 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL---LVALTNLSRVIIFDIRTLE 203 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE---EEEEETTSEEEEEETTTCC
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE---EEEEeCCCeEEEEeCCCCe
Confidence 9999999999999952 13 2222322100 0 000 11233 5677875 8899999999999999988
Q ss_pred EEecccccCCcceeeeeeeee--eccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEe-eccCCeEEEEEE---
Q 046773 272 VFVGGDLTDHNTVMGWRMLTE--FTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGER-GYGRGLYVTSVD--- 343 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~--h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~-g~~~~~~v~~~~--- 343 (453)
.+ .++.+ |...|.+++|+|++ +++++.|++|++||+++++++.... .| ...|.++.
T Consensus 204 ~~--------------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~ 267 (437)
T 3gre_A 204 RL--------------QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD--HAPITHVEVCQ 267 (437)
T ss_dssp EE--------------EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT--CEEEEEEEECT
T ss_pred ee--------------EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC--CCceEEEEecc
Confidence 43 23555 78899999999876 4556778999999999987766653 33 34566662
Q ss_pred ---ecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC--------------------------CCeeEEEEeeC
Q 046773 344 ---VNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA--------------------------DRNVNVMGCMN 394 (453)
Q Consensus 344 ---~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~--------------------------~~v~~~~~~~~ 394 (453)
+++..+++++.|+ +|+|||+.+++++..+..+. ..+..+.++ +
T Consensus 268 ~~s~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~ 339 (437)
T 3gre_A 268 FYGKNSVIVVGGSSKT-------FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N 339 (437)
T ss_dssp TTCTTEEEEEEESTTE-------EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T
T ss_pred ccCCCccEEEEEcCCC-------cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C
Confidence 2344788888888 99999999999988887542 225667777 6
Q ss_pred CCeEEEEeC-CeEEEEECCCCeEEEEecc-------------------------------------cCCceEE--EEecC
Q 046773 395 QGYALMCVE-GVIRVWEVEGGEYMYSFRE-------------------------------------RIGEEVI--AFVGD 434 (453)
Q Consensus 395 ~~~lls~s~-~tIrlWD~~tG~~l~tL~g-------------------------------------h~~~~V~--a~s~d 434 (453)
+.++++++. ++|++||+.++++++++.+ |.+. |+ ++.++
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-I~~i~~~~~ 418 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDI-INSISTCEV 418 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCC-EEEEEEEES
T ss_pred ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccc-eeeEeeecc
Confidence 677777776 9999999999999998887 6667 87 45566
Q ss_pred --CCEEEEE-eCCcEEEEe
Q 046773 435 --DRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 435 --~~~lasg-~D~~IklWD 450 (453)
+.+|+|| .||+|+||+
T Consensus 419 ~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 419 DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSEEEEEEETTSCEEEEC
T ss_pred CCceEEEEEcCCceEEEeC
Confidence 6789999 999999995
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=271.84 Aligned_cols=274 Identities=12% Similarity=0.129 Sum_probs=208.0
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeC---CCcEEEEECCCCeEEEEec-CCCCCccccccceEEEEEEc-----CCe
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFA---DGAVRLFDLTTRLHVRTFR-PQHSDRLGQFSRAVSGIIIT-----DSQ 204 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~---D~TIrlWD~~tg~~~~tl~-gh~~~~~~~~s~~V~~i~f~-----g~~ 204 (453)
.||.++ |+|++|++ .+|++|+. |++|+|||+.++++..... +|.. .|.+++|+ +..
T Consensus 15 ~~h~~~----v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 15 KGFNYT----VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAK--------PIKCGTFGATSLQQRY 82 (357)
T ss_dssp EECSSC----EEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESS--------CEEEEECTTCCTTTCC
T ss_pred cCCCCc----eEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccC--------cEEEEEEcCCCCCCce
Confidence 378854 89999987 36778887 9999999999998865544 3332 68889886 367
Q ss_pred EEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEE------EEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEec
Q 046773 205 LIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLI------DFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVG 275 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v------~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g 275 (453)
|++|+.|++|++||+.+.. +..+..|...+. .+ +|+|+++. |++|+.|++|+|||+++++ ..
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~s~~~~~---l~~~~~d~~i~vwd~~~~~~~~-- 153 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN----AIDGIGGLGIGEGAPE---IVTGSRDGTVKVWDPRQKDDPV-- 153 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEECCCSSCEE----EEEEESGGGCC-CCCE---EEEEETTSCEEEECTTSCSSCS--
T ss_pred EEEecCCCeEEEEeCCCCCccEEEEEecccceE----EEeeccccccCCCccE---EEEEeCCCeEEEEeCCCCCCcc--
Confidence 9999999999999998722 345556666553 24 46889986 8899999999999999876 21
Q ss_pred ccccCCcceeeeeeeeee----ccceeEEE----EcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEe-
Q 046773 276 GDLTDHNTVMGWRMLTEF----TEFVGRVR----VTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDV- 344 (453)
Q Consensus 276 ~~l~~~~~v~~w~~l~~h----~~~v~~v~----~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~- 344 (453)
..+..| ...+.++. |++++ +++++.|++|++||++++++.. ...|...+...+++|
T Consensus 154 ------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 154 ------------ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRK 220 (357)
T ss_dssp ------------EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCS
T ss_pred ------------eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCC
Confidence 112222 23677887 45554 4555667999999999987543 345555555566677
Q ss_pred --cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-----ecCCCeeEEEEeeCCC-eEEEEeC-CeEEEEECCCC-
Q 046773 345 --NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-----LRADRNVNVMGCMNQG-YALMCVE-GVIRVWEVEGG- 414 (453)
Q Consensus 345 --~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-----~~~~~v~~~~~~~~~~-~lls~s~-~tIrlWD~~tG- 414 (453)
+++.+++++.|+ .++||++.+++++..+. .|...+..+.++|++. ++++++. ++|+|||+.++
T Consensus 221 ~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 221 DISMNKLVATSLEG-------KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp SSSCCEEEEEESTT-------EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred CCCCCEEEEECCCC-------eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 788999999999 99999998876554443 7778899999999888 5666666 99999999864
Q ss_pred ------------------eEEEEecccCCceEE--EEecCCCEEE-EE-eCCcEEEEecC
Q 046773 415 ------------------EYMYSFRERIGEEVI--AFVGDDRHVA-AS-CGTNIHLWDFG 452 (453)
Q Consensus 415 ------------------~~l~tL~gh~~~~V~--a~s~d~~~la-sg-~D~~IklWDl~ 452 (453)
+++.++.+|.+. |+ +|+||+++|+ ++ .|++|+|||+.
T Consensus 294 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 294 QRSKKDSEGIEMGVAGSVSLLQNVTLSTQP-ISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CC--CCTTSCCCCCCCEEEEEEEEECCSSC-EEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred ccccccCCCCccccccccceeeccccCCCC-eeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 578899999988 87 6789999887 78 89999999985
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=279.92 Aligned_cols=269 Identities=16% Similarity=0.150 Sum_probs=210.3
Q ss_pred EEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC--
Q 046773 148 RCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA-- 223 (453)
Q Consensus 148 ~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g-- 223 (453)
++++|++ ++|++|+.|++|++||+.++++.+++.+|.. ..+..+.++++.|++|+.|++|+|||+.+ +
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~ 131 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADY-------TAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQ 131 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCE-------EEEEEECSSSCEEEEEETTSCEEEECTTS-CEE
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCc-------eEEEEEecCCCEEEEEECCCCEEEEeCCC-cce
Confidence 4677765 7899999999999999999998887776421 12222344688999999999999999887 4
Q ss_pred cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc
Q 046773 224 NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 224 ~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
...+..|.+.+. .++|+|++++ |++|+.|++|+|||+++++.. ..+.+|...|.+++|+
T Consensus 132 ~~~~~~h~~~v~----~~~~~~~~~~---l~s~s~d~~i~iwd~~~~~~~--------------~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 132 REIDQAHVSEIT----KLKFFPSGEA---LISSSQDMQLKIWSVKDGSNP--------------RTLIGHRATVTDIAII 190 (420)
T ss_dssp EEETTSSSSCEE----EEEECTTSSE---EEEEETTSEEEEEETTTCCCC--------------EEEECCSSCEEEEEEE
T ss_pred eeecccccCccE----EEEECCCCCE---EEEEeCCCeEEEEeCCCCcCc--------------eEEcCCCCcEEEEEEc
Confidence 223335655543 4899999996 889999999999999988732 3467889999999999
Q ss_pred CCc--eEEEEcCCcEEEEECCCCceEEEEee---ccCCeEEEE---------------------EEecCCEEEEEeCCCc
Q 046773 304 SHE--SAVACTSSRVITFDLRNQGMVLGERG---YGRGLYVTS---------------------VDVNAEAYIVVENREL 357 (453)
Q Consensus 304 ~~~--~~vas~d~tIrlWDl~t~~~~~~~~g---~~~~~~v~~---------------------~~~~g~~l~s~s~dg~ 357 (453)
|++ +++++.|++|++||+++++++..... +...+...+ |+++++.+++++.|+
T Consensus 191 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg- 269 (420)
T 3vl1_A 191 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG- 269 (420)
T ss_dssp TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-
T ss_pred CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-
Confidence 876 45567789999999999887766543 222222222 245777899999999
Q ss_pred cccCcceEEEEEcCCCeeEEEEEe-cCCCeeEEEEeeCCC-eEEEEeC-CeEEEEECCCCeE-EEEecccCCceEE-EEe
Q 046773 358 ENQNRRLAIVRRVDTFEEVCRFSL-RADRNVNVMGCMNQG-YALMCVE-GVIRVWEVEGGEY-MYSFRERIGEEVI-AFV 432 (453)
Q Consensus 358 ~~~~~~~i~Iw~~~tg~~v~~l~~-~~~~v~~~~~~~~~~-~lls~s~-~tIrlWD~~tG~~-l~tL~gh~~~~V~-a~s 432 (453)
.++|||+.+++.+..+.. +...+..+.+++++. ++++++. ++|+|||+.++++ +.++.+|.+..|. .+.
T Consensus 270 ------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 343 (420)
T 3vl1_A 270 ------VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF 343 (420)
T ss_dssp ------CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE
T ss_pred ------eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe
Confidence 999999999987777643 556699999999988 7777777 9999999999865 7888886555477 445
Q ss_pred cCCCEEEEE-eCCcEEEEecC
Q 046773 433 GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 433 ~d~~~lasg-~D~~IklWDl~ 452 (453)
+++++|+++ .|++|+|||+.
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEEC
T ss_pred CCCCEEEEecCCccEEEEecc
Confidence 788999999 99999999974
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=273.38 Aligned_cols=276 Identities=12% Similarity=0.085 Sum_probs=220.2
Q ss_pred CCCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 136 PSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 136 ~~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
..||. +.+++.+++|++..+++++.|++|+|||+.++++.+.+...|. ..|.+++|+ ++.|++|+.|++
T Consensus 87 ~~~~~--~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~-------~~v~~v~~s~~~~~l~~~~~dg~ 157 (401)
T 4aez_A 87 APGII--DDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDES-------TYVASVKWSHDGSFLSVGLGNGL 157 (401)
T ss_dssp CTTCC--CCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTT-------CCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCc--CCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCC-------CCEEEEEECCCCCEEEEECCCCe
Confidence 34787 5577889999998899999999999999999999988876333 268888885 678999999999
Q ss_pred EEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeee
Q 046773 214 IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~ 291 (453)
|+|||+.+.. +..+..|...+. .++|++ + .|++|+.|++|++||+++.. .. ..+.
T Consensus 158 i~iwd~~~~~~~~~~~~~~~~v~----~~~~~~--~---~l~~~~~dg~i~i~d~~~~~~~~--------------~~~~ 214 (401)
T 4aez_A 158 VDIYDVESQTKLRTMAGHQARVG----CLSWNR--H---VLSSGSRSGAIHHHDVRIANHQI--------------GTLQ 214 (401)
T ss_dssp EEEEETTTCCEEEEECCCSSCEE----EEEEET--T---EEEEEETTSEEEEEETTSSSCEE--------------EEEE
T ss_pred EEEEECcCCeEEEEecCCCCceE----EEEECC--C---EEEEEcCCCCEEEEecccCccee--------------eEEc
Confidence 9999998722 455556665543 477754 4 48899999999999998644 22 3467
Q ss_pred eeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCE-EEEEe--CCCccccCcceEE
Q 046773 292 EFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEA-YIVVE--NRELENQNRRLAI 366 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~-l~s~s--~dg~~~~~~~~i~ 366 (453)
+|...|.++.|+|++ +++++.|++|++||++++.++....+|...+...++++++.. +++++ .|+ .++
T Consensus 215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~-------~i~ 287 (401)
T 4aez_A 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK-------QIH 287 (401)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC-------EEE
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC-------EEE
Confidence 888999999999876 455567899999999998877766666665555666676544 45544 577 999
Q ss_pred EEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEe--C-CeEEEEECCCCeEEE--EecccCCceEE--EEecCCCEEE
Q 046773 367 VRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCV--E-GVIRVWEVEGGEYMY--SFRERIGEEVI--AFVGDDRHVA 439 (453)
Q Consensus 367 Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s--~-~tIrlWD~~tG~~l~--tL~gh~~~~V~--a~s~d~~~la 439 (453)
+||+.+++++..+. +...+..+.+++++.++++++ . ++|+|||+.++++.. .+.+|.+. |. +|+||+++|+
T Consensus 288 i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~-v~~~~~s~dg~~l~ 365 (401)
T 4aez_A 288 FWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR-VLYSALSPDGRILS 365 (401)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC-CCEEEECTTSSEEE
T ss_pred EEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC-EEEEEECCCCCEEE
Confidence 99999999988886 445689999999999998864 3 999999999976654 46789888 76 6789999999
Q ss_pred EE-eCCcEEEEecC
Q 046773 440 AS-CGTNIHLWDFG 452 (453)
Q Consensus 440 sg-~D~~IklWDl~ 452 (453)
++ .|++|+|||+.
T Consensus 366 s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 366 TAASDENLKFWRVY 379 (401)
T ss_dssp EECTTSEEEEEECC
T ss_pred EEeCCCcEEEEECC
Confidence 99 99999999984
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=283.39 Aligned_cols=260 Identities=15% Similarity=0.131 Sum_probs=206.6
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCc
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDG 238 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~ 238 (453)
+.++..|+..+..|.++|.||.. .|.+++|+ ++.|+|||.|++|+|||+.+ + ..++..|...+.
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~--------~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~h~~~v~--- 112 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSG--------KVYSLDWTPEKNWIVSASQDGRLIVWNALT-SQKTHAIKLHCPWVM--- 112 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSS--------CEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEEECCCTTCC---
T ss_pred cccccccccceeEEeeccccccc--------EEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CccceEEecCCCCEE---
Confidence 34556788889999999999865 68888886 66899999999999999987 4 456667766554
Q ss_pred eEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCc
Q 046773 239 VLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSR 315 (453)
Q Consensus 239 ~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~t 315 (453)
.++|+|+|++ |++|+.|++|+|||+.+.....+ .....+.+.+|.+.|.+++|.|+. ++++|.|++
T Consensus 113 -~~~~s~~g~~---las~~~d~~v~iw~~~~~~~~~~-------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~ 181 (380)
T 3iz6_a 113 -ECAFAPNGQS---VACGGLDSACSIFNLSSQADRDG-------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181 (380)
T ss_dssp -CCEECTTSSE---EEECCSSSCCEEEECCCCSSCCC-------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred -EEEECCCCCE---EEEeeCCCcEEEEECCCCccccC-------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence 3799999996 88999999999999987541100 001114577999999999998742 566677899
Q ss_pred EEEEECCCCceEEEE-----eeccCCeEEEEEEe-cCCEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCCCeeE
Q 046773 316 VITFDLRNQGMVLGE-----RGYGRGLYVTSVDV-NAEAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVN 388 (453)
Q Consensus 316 IrlWDl~t~~~~~~~-----~g~~~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~ 388 (453)
|++||+++++++... .+|...+...++.+ +++.+++++.|+ +|+|||+. +++++..+..|...|..
T Consensus 182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-------~v~~wd~~~~~~~~~~~~~h~~~v~~ 254 (380)
T 3iz6_a 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-------TVRLWDLRITSRAVRTYHGHEGDINS 254 (380)
T ss_dssp EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-------CEEEEETTTTCCCCEEECCCSSCCCE
T ss_pred EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-------eEEEEECCCCCcceEEECCcCCCeEE
Confidence 999999999887654 34544443334433 678999999999 99999997 45788888889888999
Q ss_pred EEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCc------eEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 389 VMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGE------EVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 389 ~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~------~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+.++|++.++++++. ++|||||+.+++++.++..+... .|. +|+|++++|++| .|++|+|||+.
T Consensus 255 v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 255 VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 999999999998887 99999999999999998765321 143 788999999999 99999999963
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=262.36 Aligned_cols=239 Identities=14% Similarity=0.186 Sum_probs=196.2
Q ss_pred eEEEEecCCCCCccccccceEEEEEEcC---CeEEEEeCCCCEEEEEeecC----C--cceEEeeecceecCceEEEEeC
Q 046773 175 LHVRTFRPQHSDRLGQFSRAVSGIIITD---SQLIFATLDGDIHVAVIDDV----A--NETRTAHFGSVMDDGVLIDFTG 245 (453)
Q Consensus 175 ~~~~tl~gh~~~~~~~~s~~V~~i~f~g---~~LasgS~D~tIkvWd~~~~----g--~~~~~~~~~~v~~~~~~v~Fs~ 245 (453)
.+..+|.||.. .|.+++|++ +.|+|||.|++|++|++... + +.++.+|...+. .++|+|
T Consensus 8 ~l~~~l~gH~~--------~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~----~~~~s~ 75 (319)
T 3frx_A 8 VLRGTLEGHNG--------WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ----DCTLTA 75 (319)
T ss_dssp EEEEEECCCSS--------CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEE----EEEECT
T ss_pred EEEEEEccccc--------eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEE----EEEECC
Confidence 45678998765 688899863 68999999999999998752 1 245566766554 489999
Q ss_pred CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCC
Q 046773 246 CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRN 323 (453)
Q Consensus 246 dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t 323 (453)
||++ |+|||.|++|||||+++++.+ ..+.+|...|.+++|+|++ +++++.|++|||||++.
T Consensus 76 dg~~---l~s~s~D~~v~~wd~~~~~~~--------------~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~ 138 (319)
T 3frx_A 76 DGAY---ALSASWDKTLRLWDVATGETY--------------QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138 (319)
T ss_dssp TSSE---EEEEETTSEEEEEETTTTEEE--------------EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred CCCE---EEEEeCCCEEEEEECCCCCee--------------EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 9996 889999999999999999854 3567899999999999876 45567789999999974
Q ss_pred CceEEEEeeccCCeEEEEEEec------CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCe
Q 046773 324 QGMVLGERGYGRGLYVTSVDVN------AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGY 397 (453)
Q Consensus 324 ~~~~~~~~g~~~~~~v~~~~~~------g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~ 397 (453)
+++.++.+|...+....+.|. +..+++++.|+ +|++||+.+++....+..|...+..+.++|++.+
T Consensus 139 -~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 139 -QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK-------MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210 (319)
T ss_dssp -CEEEEECCCSSCEEEEEECCC------CCEEEEEETTS-------CEEEEETTTTEEEEEECCCCSCEEEEEECTTSSE
T ss_pred -CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCC-------EEEEEECCcchhheeecCCCCcEEEEEEcCCCCE
Confidence 566666677655544444442 34789999999 9999999999998889899888999999999999
Q ss_pred EEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 398 ALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 398 lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
+++++. ++|+|||+.++++++++..+ +. |. +|+||+.+|+++.+..|++|++.
T Consensus 211 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~-v~~~~~sp~~~~la~~~~~~i~v~~~~ 266 (319)
T 3frx_A 211 IASAGKDGEIMLWNLAAKKAMYTLSAQ-DE-VFSLAFSPNRYWLAAATATGIKVFSLD 266 (319)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEECC-SC-EEEEEECSSSSEEEEEETTEEEEEEET
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCC-Cc-EEEEEEcCCCCEEEEEcCCCcEEEEeC
Confidence 998887 99999999999999999865 44 55 78899999998877789999874
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=270.78 Aligned_cols=276 Identities=9% Similarity=0.087 Sum_probs=213.1
Q ss_pred EEEEEecC--C-EEEEEeCCCcEEEEEC----CCCe------EEEEecCCCCC--ccccccceEEEEEEc--CCeEEEEe
Q 046773 147 CRCLTLSD--L-YLACGFADGAVRLFDL----TTRL------HVRTFRPQHSD--RLGQFSRAVSGIIIT--DSQLIFAT 209 (453)
Q Consensus 147 v~~lafs~--~-~LaSGS~D~TIrlWD~----~tg~------~~~tl~gh~~~--~~~~~s~~V~~i~f~--g~~LasgS 209 (453)
|+|++|++ + +||+|+.|++|+|||+ .+++ ....+...... ....+...|.+++|+ ++.|++|+
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 127 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV 127 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEe
Confidence 78999986 4 9999999999999999 9998 45555421000 000012368888886 67899999
Q ss_pred CCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 210 LDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 210 ~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
.|++|+|||....-+..+..|...+. .++|+|++++ |++++.|++|++||+++++... .
T Consensus 128 ~dg~i~i~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~---l~~~~~d~~i~iwd~~~~~~~~--------------~ 186 (425)
T 1r5m_A 128 ENGELRLWNKTGALLNVLNFHRAPIV----SVKWNKDGTH---IISMDVENVTILWNVISGTVMQ--------------H 186 (425)
T ss_dssp TTSCEEEEETTSCEEEEECCCCSCEE----EEEECTTSSE---EEEEETTCCEEEEETTTTEEEE--------------E
T ss_pred CCCeEEEEeCCCCeeeeccCCCccEE----EEEECCCCCE---EEEEecCCeEEEEECCCCcEEE--------------E
Confidence 99999999943311455555655543 4899999996 7899999999999999988431 1
Q ss_pred eeeeccc---------------eeEEEEcCCceEEE-EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEe
Q 046773 290 LTEFTEF---------------VGRVRVTSHESAVA-CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVE 353 (453)
Q Consensus 290 l~~h~~~---------------v~~v~~s~~~~~va-s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s 353 (453)
+..+... +.++.+++++.+++ +.++.|++||+++++.+....+|...+...+++++++.+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 2222222 77888887776554 5578999999999876666666766666677888889999999
Q ss_pred CCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--E
Q 046773 354 NRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--A 430 (453)
Q Consensus 354 ~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a 430 (453)
.|+ .++||++.+++++..+..+...+..+.+++++ ++++++. ++|++||+.+++++..+.+|... |. +
T Consensus 267 ~d~-------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-i~~~~ 337 (425)
T 1r5m_A 267 DDG-------TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP-IFAGR 337 (425)
T ss_dssp TTS-------CEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC-EEEEE
T ss_pred CCC-------EEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc-EEEEE
Confidence 999 99999999999888888888889999999988 7777776 99999999999999999999888 77 6
Q ss_pred EecCCCEEEEE-eCCcEEEEecC
Q 046773 431 FVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 431 ~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|+|++++|+++ .|+.|+|||+.
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECH
T ss_pred EcCCCCEEEEEECCCeEEEEECC
Confidence 78999999999 99999999973
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=272.33 Aligned_cols=252 Identities=11% Similarity=0.058 Sum_probs=185.3
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCe--EEEEecCCCCCccccccceEEEEEEc----CCeEEEE
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRL--HVRTFRPQHSDRLGQFSRAVSGIIIT----DSQLIFA 208 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--~~~tl~gh~~~~~~~~s~~V~~i~f~----g~~Lasg 208 (453)
.||.++ |+|++|++ ++|||||.|++|||||+.+++ ++.+|.+|.. .|.+++|+ +..|+||
T Consensus 10 ~~H~~~----V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~--------~V~~v~~~~~~~~~~l~s~ 77 (316)
T 3bg1_A 10 TSHEDM----IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG--------PVWQVAWAHPMYGNILASC 77 (316)
T ss_dssp ----CC----EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS--------CEEEEEECCGGGSSCEEEE
T ss_pred ccccCe----EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc--------cEEEEEeCCCCCCCEEEEE
Confidence 389855 88999975 799999999999999999885 5788998764 68889984 6789999
Q ss_pred eCCCCEEEEEeecCC----cceEEeeecceecCceEEEEeCC--CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCc
Q 046773 209 TLDGDIHVAVIDDVA----NETRTAHFGSVMDDGVLIDFTGC--SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHN 282 (453)
Q Consensus 209 S~D~tIkvWd~~~~g----~~~~~~~~~~v~~~~~~v~Fs~d--g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~ 282 (453)
|.|++|+|||+++ + ...+.+|...|. .|+|+|+ |.+ |++|+.|++|+|||++++....
T Consensus 78 s~D~~v~iWd~~~-~~~~~~~~~~~h~~~V~----~v~~~p~~~g~~---lasgs~D~~i~lwd~~~~~~~~-------- 141 (316)
T 3bg1_A 78 SYDRKVIIWREEN-GTWEKSHEHAGHDSSVN----SVCWAPHDYGLI---LACGSSDGAISLLTYTGEGQWE-------- 141 (316)
T ss_dssp ETTSCEEEECCSS-SCCCEEEEECCCSSCCC----EEEECCTTTCSC---EEEECSSSCEEEEEECSSSCEE--------
T ss_pred ECCCEEEEEECCC-CcceEEEEccCCCCceE----EEEECCCCCCcE---EEEEcCCCCEEEEecCCCCCcc--------
Confidence 9999999999987 3 223445655543 5899998 665 8899999999999998764210
Q ss_pred ceeeeeeeeeeccceeEEEEcCC-------------------ceEEEEcCCcEEEEECCCCc---eEEEEeeccCCeEEE
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSH-------------------ESAVACTSSRVITFDLRNQG---MVLGERGYGRGLYVT 340 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~-------------------~~~vas~d~tIrlWDl~t~~---~~~~~~g~~~~~~v~ 340 (453)
....+.+|...|.++.|+|+ .+++++.|++|||||+++++ ++..+.+|...+...
T Consensus 142 ---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v 218 (316)
T 3bg1_A 142 ---VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDV 218 (316)
T ss_dssp ---ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEE
T ss_pred ---eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEE
Confidence 01235578888999999875 24555678999999998653 334456676555444
Q ss_pred EEEecC----CEEEEEeCCCccccCcceEEEEEcCCC---e-eEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEEC
Q 046773 341 SVDVNA----EAYIVVENRELENQNRRLAIVRRVDTF---E-EVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEV 411 (453)
Q Consensus 341 ~~~~~g----~~l~s~s~dg~~~~~~~~i~Iw~~~tg---~-~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~ 411 (453)
+|+|++ ..+++++.|+ +|+||+.+++ + ....+..+.+.+..+.++|++.++++++. ++|+|||.
T Consensus 219 ~~sp~~~~~~~~las~s~D~-------~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 219 AWAPSIGLPTSTIASCSQDG-------RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp ECCCCSSCSCCEEEEEETTC-------EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred EecCCCCCCCceEEEEcCCC-------eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 555654 6799999999 9999998863 1 22334556778999999999999998887 99999998
Q ss_pred C-CC--eEEEEecccCCc
Q 046773 412 E-GG--EYMYSFRERIGE 426 (453)
Q Consensus 412 ~-tG--~~l~tL~gh~~~ 426 (453)
. .| +|+.++....+.
T Consensus 292 ~~~g~~~~~~~~~~~~~~ 309 (316)
T 3bg1_A 292 SVDGQWVCISDVNKGQGS 309 (316)
T ss_dssp CTTSCEEEEEECC-----
T ss_pred CCCCcEEEeeeccCCCCc
Confidence 6 33 566666655444
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=263.44 Aligned_cols=271 Identities=13% Similarity=0.133 Sum_probs=213.7
Q ss_pred CCCCCCCCeEEEEEEecC-----CEEEEEeCCCcEEEEECCC-CeEE-EEecCCCCCccccccceEEEEEEc--CCeEEE
Q 046773 137 SDVDNPDGLTCRCLTLSD-----LYLACGFADGAVRLFDLTT-RLHV-RTFRPQHSDRLGQFSRAVSGIIIT--DSQLIF 207 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~-----~~LaSGS~D~TIrlWD~~t-g~~~-~tl~gh~~~~~~~~s~~V~~i~f~--g~~Las 207 (453)
.+|.++ |+|++|++ ++||+|+.|++|+|||+.+ ++++ +++.+|.. .|.+++|+ ++.|++
T Consensus 36 ~~h~~~----v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 36 SSPDDS----IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG--------PVLDVCWSDDGSKVFT 103 (368)
T ss_dssp SCCSSC----EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS--------CEEEEEECTTSSEEEE
T ss_pred cCCCCc----eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC--------CEEEEEECcCCCEEEE
Confidence 489854 89999986 5899999999999999998 6665 77887654 68888885 678999
Q ss_pred EeCCCCEEEEEeecCC-cceEEeeecceecCceEEEE--eCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 208 ATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDF--TGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 208 gS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~F--s~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
|+.|++|+|||+++ + ...+..|...+. .++| +|++++ |++|+.|++|+|||+++++.+
T Consensus 104 ~~~dg~v~iwd~~~-~~~~~~~~~~~~v~----~~~~~~~~~~~~---l~~~~~dg~i~vwd~~~~~~~----------- 164 (368)
T 3mmy_A 104 ASCDKTAKMWDLSS-NQAIQIAQHDAPVK----TIHWIKAPNYSC---VMTGSWDKTLKFWDTRSSNPM----------- 164 (368)
T ss_dssp EETTSEEEEEETTT-TEEEEEEECSSCEE----EEEEEECSSCEE---EEEEETTSEEEEECSSCSSCS-----------
T ss_pred EcCCCcEEEEEcCC-CCceeeccccCceE----EEEEEeCCCCCE---EEEccCCCcEEEEECCCCcEE-----------
Confidence 99999999999987 4 333445655543 4788 899885 889999999999999998732
Q ss_pred eeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEE--eeccCCeEEEEEEecCCE----EEEEeCCCcc
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGE--RGYGRGLYVTSVDVNAEA----YIVVENRELE 358 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~--~g~~~~~~v~~~~~~g~~----l~s~s~dg~~ 358 (453)
..+..+ ..+.++.+.+...++++.++.+++||++........ ..+.+...+.++.+++.. +++++.|+
T Consensus 165 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-- 238 (368)
T 3mmy_A 165 ---MVLQLP-ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG-- 238 (368)
T ss_dssp ---EEEECS-SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS--
T ss_pred ---EEEecC-CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC--
Confidence 112222 356667777777888888999999999987554332 334455666777666554 99999999
Q ss_pred ccCcceEEEEEcCCC---eeEEEEEecCC------------CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc
Q 046773 359 NQNRRLAIVRRVDTF---EEVCRFSLRAD------------RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE 422 (453)
Q Consensus 359 ~~~~~~i~Iw~~~tg---~~v~~l~~~~~------------~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g 422 (453)
.++||++++. +.+..+..|.. .+..+.++|++.++++++. ++|+|||+.+++++.++.+
T Consensus 239 -----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 239 -----RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp -----EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred -----cEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 9999999987 55666766654 5889999999999998887 9999999999999999999
Q ss_pred cCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 423 RIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 423 h~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
|.+. |+ +|+||+++|+++ .|+..+.|+
T Consensus 314 ~~~~-v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 314 LDQP-ISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp CSSC-EEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred CCCC-ceEEEECCCCCeEEEEeccccccccc
Confidence 9988 87 678999999998 776555444
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=270.15 Aligned_cols=280 Identities=13% Similarity=0.083 Sum_probs=205.0
Q ss_pred EEEEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC
Q 046773 148 RCLTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 148 ~~lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g 223 (453)
.+..|+ +++||+|+.|++|+|||+.++++++.+.+|.. .|.+++|+ ++.|++|+.|++|++||+.+..
T Consensus 101 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 172 (420)
T 3vl1_A 101 AVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVS--------EITKLKFFPSGEALISSSQDMQLKIWSVKDGS 172 (420)
T ss_dssp EEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSS--------CEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccC--------ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 344454 57999999999999999999999999888754 68888885 6689999999999999998722
Q ss_pred -cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE---ecccccCCcceeeeee--------ee
Q 046773 224 -NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF---VGGDLTDHNTVMGWRM--------LT 291 (453)
Q Consensus 224 -~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~---~g~~l~~~~~v~~w~~--------l~ 291 (453)
+..+.+|.+.+. .++|+|++++ |++|+.|++|+|||+++++.. .++... ...+..... ..
T Consensus 173 ~~~~~~~h~~~v~----~~~~~~~~~~---l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~ 244 (420)
T 3vl1_A 173 NPRTLIGHRATVT----DIAIIDRGRN---VLSASLDGTIRLWECGTGTTIHTFNRKENP-HDGVNSIALFVGTDRQLHE 244 (420)
T ss_dssp CCEEEECCSSCEE----EEEEETTTTE---EEEEETTSCEEEEETTTTEEEEEECBTTBT-TCCEEEEEEEECCCSSCGG
T ss_pred CceEEcCCCCcEE----EEEEcCCCCE---EEEEcCCCcEEEeECCCCceeEEeecCCCC-CCCccEEEEecCCcceeee
Confidence 566777776654 4899999986 889999999999999998832 221100 000100000 01
Q ss_pred eeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCC-EEEEEeCCCccccCcceEEE
Q 046773 292 EFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAE-AYIVVENRELENQNRRLAIV 367 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~I 367 (453)
.+...+.+++|+|++. ++++.|++|++||+++++.+... .+|...+...++++++. .+++++.|+ .++|
T Consensus 245 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg-------~i~v 317 (420)
T 3vl1_A 245 ISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG-------MLAQ 317 (420)
T ss_dssp GCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS-------EEEE
T ss_pred cccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC-------eEEE
Confidence 1235556666777763 44567899999999998876665 44555555556677777 899999999 9999
Q ss_pred EEcCCCee-EEEEEecC-CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC---------eEEEEecccCCceEE--EEec
Q 046773 368 RRVDTFEE-VCRFSLRA-DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG---------EYMYSFRERIGEEVI--AFVG 433 (453)
Q Consensus 368 w~~~tg~~-v~~l~~~~-~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG---------~~l~tL~gh~~~~V~--a~s~ 433 (453)
||+.++++ +..+..+. ..+..+ ++++++++++++. ++|+|||+.+. .....+.+|.+. |. +|+|
T Consensus 318 wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~ 395 (420)
T 3vl1_A 318 WDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA-VSQFCYVS 395 (420)
T ss_dssp EETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC-CCEEEEEC
T ss_pred EEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc-eEEEEEcc
Confidence 99998754 77777744 435554 5667778777776 99999999873 223345567666 65 7789
Q ss_pred CCC----EEEEEeCCcEEEEecC
Q 046773 434 DDR----HVAASCGTNIHLWDFG 452 (453)
Q Consensus 434 d~~----~lasg~D~~IklWDl~ 452 (453)
|+. .+++|.++.+++|++.
T Consensus 396 ~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 396 DDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CSSSSCEEEEEETTTEEEEEESC
T ss_pred CCCCcceEEEEcCCceEEEEecc
Confidence 998 4555599999999985
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=265.34 Aligned_cols=249 Identities=9% Similarity=0.032 Sum_probs=187.6
Q ss_pred CCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCc---ceE-Ee-eecceecCceEEEEeCC
Q 046773 172 TTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVAN---ETR-TA-HFGSVMDDGVLIDFTGC 246 (453)
Q Consensus 172 ~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~---~~~-~~-~~~~v~~~~~~v~Fs~d 246 (453)
.+.+++++|.+|.. .|.+++|+++.||+||.|++|+|||+..... .++ .. |.+.|. .|+|+|+
T Consensus 2 ~~~~~~~~~~~h~~--------~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~----~v~~sp~ 69 (330)
T 2hes_X 2 ASINLIKSLKLYKE--------KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR----SVAWRPH 69 (330)
T ss_dssp -CCEEEEEEECCSS--------CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEE----EEEECTT
T ss_pred cccccceeeccCCC--------ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEE----EEEECCC
Confidence 46788999998765 6889999999999999999999999976211 222 12 554443 5899999
Q ss_pred CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCC
Q 046773 247 SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQ 324 (453)
Q Consensus 247 g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~ 324 (453)
|++ |++||.|++|+|||++.+..-. .......++.+|.+.|.+|+|+|++ +++++.|++|+|||+++.
T Consensus 70 ~~~---las~s~D~~v~iw~~~~~~~~~-------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 70 TSL---LAAGSFDSTVSIWAKEESADRT-------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp SSE---EEEEETTSCEEEEEC--------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred CCE---EEEEeCCCcEEEEEcccCcCcc-------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence 986 8899999999999996532100 0011124678999999999999876 455567899999999532
Q ss_pred ----ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC--eeEEEEEecCCCeeEEEEeeC--CC
Q 046773 325 ----GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF--EEVCRFSLRADRNVNVMGCMN--QG 396 (453)
Q Consensus 325 ----~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg--~~v~~l~~~~~~v~~~~~~~~--~~ 396 (453)
+++..+.+|...+...+|+|+++.+++++.|+ +|+||+..++ +++..+..|...|..+.++++ +.
T Consensus 140 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-------~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 212 (330)
T 2hes_X 140 GEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD-------TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVF 212 (330)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS-------CEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSC
T ss_pred CCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC-------eEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCee
Confidence 34455567776666667788899999999999 9999998876 678888889888999999997 55
Q ss_pred eEEEEeC-CeEEEEECCCC--------eEEEEecc-cCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 397 YALMCVE-GVIRVWEVEGG--------EYMYSFRE-RIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 397 ~lls~s~-~tIrlWD~~tG--------~~l~tL~g-h~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
++++++. ++|||||+.++ +++.++.+ |... |+ +|++++ .|+++ .|++|+|||+
T Consensus 213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~v~~s~~~-~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ-VYNVAWGFNG-LIASVGADGVLAVYEE 278 (330)
T ss_dssp EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC-EEEEEECTTS-CEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccc-eEEEEEcCCC-EEEEEeCCCEEEEEEc
Confidence 7777776 99999999876 67778876 8777 88 455555 67777 9999999986
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=307.53 Aligned_cols=276 Identities=16% Similarity=0.162 Sum_probs=220.5
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~ 212 (453)
.||.++ |+|++|++ ++||||+.|++|+|||+.++++++++.+|.. .|.+++|+ ++.|++|+.|+
T Consensus 612 ~~h~~~----v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~--------~v~~~~~s~~~~~l~s~~~d~ 679 (1249)
T 3sfz_A 612 RPHTDA----VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED--------EVLCCAFSSDDSYIATCSADK 679 (1249)
T ss_dssp CCCSSC----EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS--------CEEEEEECTTSSEEEEEETTS
T ss_pred eccccc----EEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCC--------CEEEEEEecCCCEEEEEeCCC
Confidence 389844 88999986 6999999999999999999999999998764 68888885 67899999999
Q ss_pred CEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeee
Q 046773 213 DIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 213 tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l 290 (453)
+|+|||+.+ + +.++.+|...+. .++|+|++... .|++|+.|++|+|||++++++. .++
T Consensus 680 ~v~vwd~~~-~~~~~~~~~~~~~v~----~~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~--------------~~~ 739 (1249)
T 3sfz_A 680 KVKIWDSAT-GKLVHTYDEHSEQVN----CCHFTNKSNHL-LLATGSNDFFLKLWDLNQKECR--------------NTM 739 (1249)
T ss_dssp EEEEEETTT-CCEEEEEECCSSCEE----EEEECSSSSCC-EEEEEETTSCEEEEETTSSSEE--------------EEE
T ss_pred eEEEEECCC-CceEEEEcCCCCcEE----EEEEecCCCce-EEEEEeCCCeEEEEECCCcchh--------------hee
Confidence 999999987 5 456666766554 48999975532 4889999999999999998853 346
Q ss_pred eeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE--------------------------------------
Q 046773 291 TEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE-------------------------------------- 330 (453)
Q Consensus 291 ~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~-------------------------------------- 330 (453)
.+|.++|.+++|+|++ +++++.|++|++||++++++....
T Consensus 740 ~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~ 819 (1249)
T 3sfz_A 740 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 819 (1249)
T ss_dssp CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence 6888999999999876 455567889999999877544322
Q ss_pred -----------------eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee
Q 046773 331 -----------------RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 331 -----------------~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~ 393 (453)
.+|...+...+|++++..+++++.++ +++||++++++++..+..|...+..+.+++
T Consensus 820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-------~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 892 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY-------CVELWNIDSRLKVADCRGHLSWVHGVMFSP 892 (1249)
T ss_dssp EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS-------CEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC-------eEEEEEcCCCceeeecCCCccceEEEEECC
Confidence 13333444556778889999999999 999999999999988888888888888888
Q ss_pred CCCeEEEEeC-CeEEEEEC-------------------------------------------------------------
Q 046773 394 NQGYALMCVE-GVIRVWEV------------------------------------------------------------- 411 (453)
Q Consensus 394 ~~~~lls~s~-~tIrlWD~------------------------------------------------------------- 411 (453)
++.++++++. ++|++||+
T Consensus 893 dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 972 (1249)
T 3sfz_A 893 DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972 (1249)
T ss_dssp TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTT
T ss_pred CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCC
Confidence 8887777765 77777764
Q ss_pred ------------------CCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 412 ------------------EGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 412 ------------------~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+++++.++.+|.+. |. +|+||+++|+++ .|++|++||+.
T Consensus 973 g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 973 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA-VRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp SSEEEEEETTSCCEEEETTTTSCEEECCCCSSC-CCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred CCEEEEEcCCCCEEEEEcCCCceeeecccCCCc-eEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 345566667778777 66 677888888888 88999999864
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=260.95 Aligned_cols=266 Identities=12% Similarity=0.066 Sum_probs=214.1
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCe---EEEEecCCCCCccccccceEEEEEE--cCC-eEEEE
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRL---HVRTFRPQHSDRLGQFSRAVSGIII--TDS-QLIFA 208 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~---~~~tl~gh~~~~~~~~s~~V~~i~f--~g~-~Lasg 208 (453)
.+|.++ |+|++|++ ++||+|+.|++|+|||+.+++ .++.+.+|.. .|.+++| ++. .|++|
T Consensus 8 ~~h~~~----v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 8 QAPKDY----ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--------PLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp SCCSSC----EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS--------CEEEEEEEESSSEEEEEE
T ss_pred cCCCCc----EEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC--------ceEEEEECCCCCcEEEEE
Confidence 378744 88999975 699999999999999999988 3455555543 5777776 477 89999
Q ss_pred eCCCCEEEEEe-ecCCcceEEe--eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC---------CcEEecc
Q 046773 209 TLDGDIHVAVI-DDVANETRTA--HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA---------EEVFVGG 276 (453)
Q Consensus 209 S~D~tIkvWd~-~~~g~~~~~~--~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t---------g~~~~g~ 276 (453)
+.|++|++||+ ++.....+.. |...+. .++|+| ++. |++++.|++|++||+++ ++.+
T Consensus 76 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~----~l~~~~-~~~---l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--- 144 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSFQALTNNEANLGIC----RICKYG-DDK---LIAASWDGLIEVIDPRNYGDGVIAVKNLNS--- 144 (342)
T ss_dssp ETTSCEEEECSSSSSSEEECBSCCCCSCEE----EEEEET-TTE---EEEEETTSEEEEECHHHHTTBCEEEEESCS---
T ss_pred cCCCeEEEEEeccCCceEeccccCCCCceE----EEEeCC-CCE---EEEEcCCCeEEEEcccccccccccccCCee---
Confidence 99999999999 7622444555 655543 489999 775 88999999999999987 4421
Q ss_pred cccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCC-CceEE--EEeeccCCeEEEEEEe-cCCEEEEE
Q 046773 277 DLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRN-QGMVL--GERGYGRGLYVTSVDV-NAEAYIVV 352 (453)
Q Consensus 277 ~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t-~~~~~--~~~g~~~~~~v~~~~~-~g~~l~s~ 352 (453)
.++. |...|.+++++|+.+++++.+++|++||+++ +.... ....|...+...++++ +++.++++
T Consensus 145 -----------~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 145 -----------NNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp -----------SSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred -----------eEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence 1233 6788999999999988888899999999998 65322 2234444555556777 88999999
Q ss_pred eCCCccccCcceEEEEEcCCC------eeEEEEEecCC---------CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeE
Q 046773 353 ENRELENQNRRLAIVRRVDTF------EEVCRFSLRAD---------RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEY 416 (453)
Q Consensus 353 s~dg~~~~~~~~i~Iw~~~tg------~~v~~l~~~~~---------~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~ 416 (453)
+.++ .++||+++.. +.+..+..+.. .+..+.+++++.++++++. ++|+|||+.++++
T Consensus 213 ~~dg-------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 213 SIDG-------RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp ETTS-------EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred ecCC-------cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 9999 9999999887 77888887754 7899999999999998887 9999999999999
Q ss_pred EEEeccc-CCceEEEEecCCCEEEEE-eCCc
Q 046773 417 MYSFRER-IGEEVIAFVGDDRHVAAS-CGTN 445 (453)
Q Consensus 417 l~tL~gh-~~~~V~a~s~d~~~lasg-~D~~ 445 (453)
+.++.+| .+. |.+++||+++|+++ .|++
T Consensus 286 ~~~~~~~h~~~-v~~~~~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 286 IKNFAKFNEDS-VVKIACSDNILCLATSDDT 315 (342)
T ss_dssp EEECCCCSSSE-EEEEEECSSEEEEEEECTH
T ss_pred hhhhhcccCCC-ceEecCCCCeEEEEecCCc
Confidence 9999998 777 99777999999999 9998
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=278.63 Aligned_cols=232 Identities=9% Similarity=0.035 Sum_probs=175.2
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCC--eEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTR--LHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg--~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~ 220 (453)
|+|++|++ ++||+|+.|++|+|||+.++ +++++|.+|.. .|.+++|+ ++.|++||.|++|+|||+.
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~--------~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK--------IVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS--------CEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCc--------eEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 78999985 69999999999999999999 88999988754 58888886 5789999999999999998
Q ss_pred cCC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee-ecc
Q 046773 221 DVA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE-FTE 295 (453)
Q Consensus 221 ~~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~-h~~ 295 (453)
+.. ...+..|...+. .++|+|++++ |++|+.|++|+|||+++++.+. ....+.+ |..
T Consensus 86 ~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~---l~~~~~d~~i~iwd~~~~~~~~-----------~~~~~~~~h~~ 147 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAAT----FVRWSPNEDK---FAVGSGARVISVCYFEQENDWW-----------VSKHLKRPLRS 147 (377)
T ss_dssp ---CCCCEEECCCCSSCEE----EEECCTTSSC---CEEEESSSCEEECCC-----CC-----------CCEEECSSCCS
T ss_pred CCCceeeeeEecccCCceE----EEEECCCCCE---EEEEecCCeEEEEEECCcccce-----------eeeEeecccCC
Confidence 722 122334554443 4899999996 7899999999999999876210 0134556 889
Q ss_pred ceeEEEEcCCc--eEEEEcCCcEEEEECCC------------------CceEEEEeeccCCeEEEEEEecCCEEEEEeCC
Q 046773 296 FVGRVRVTSHE--SAVACTSSRVITFDLRN------------------QGMVLGERGYGRGLYVTSVDVNAEAYIVVENR 355 (453)
Q Consensus 296 ~v~~v~~s~~~--~~vas~d~tIrlWDl~t------------------~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~d 355 (453)
.|.+++|+|++ +++++.|++|++||+++ ++++..+ +|...+...+|+|+++.+++++.|
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC
Confidence 99999999876 45556789999999963 3333334 666666666778888999999999
Q ss_pred CccccCcceEEEEEcCCCee----EEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECC
Q 046773 356 ELENQNRRLAIVRRVDTFEE----VCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVE 412 (453)
Q Consensus 356 g~~~~~~~~i~Iw~~~tg~~----v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~ 412 (453)
+ +|+||++.++++ +..+..|...+..+.+++++.++++++++.+.+|+..
T Consensus 227 ~-------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 227 S-------SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp T-------EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred C-------cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 9 999999999887 7788888888999999999988887777444477665
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=289.83 Aligned_cols=275 Identities=13% Similarity=0.151 Sum_probs=228.4
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
||.++ |.|++|++ ++||+|+.|++|+|||+.++++++++.+|.. .|.+++|+ ++.|++|+.|++
T Consensus 11 ~h~~~----v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 11 NRSDR----VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTET--------PVRAGKFIARKNWIIVGSDDFR 78 (814)
T ss_dssp EECSC----EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------CEEEEEEEGGGTEEEEEETTSE
T ss_pred cCCCc----eEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCC--------cEEEEEEeCCCCEEEEEeCCCe
Confidence 78744 88999986 6999999999999999999999999998754 57778775 678999999999
Q ss_pred EEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 214 IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
|+|||+.+.. +..+..|.+.+. .++|+|+|++ |++|+.|++|+|||++++.... ..+.+
T Consensus 79 i~vw~~~~~~~~~~~~~~~~~v~----~~~~s~~~~~---l~~~~~dg~i~vw~~~~~~~~~-------------~~~~~ 138 (814)
T 3mkq_A 79 IRVFNYNTGEKVVDFEAHPDYIR----SIAVHPTKPY---VLSGSDDLTVKLWNWENNWALE-------------QTFEG 138 (814)
T ss_dssp EEEEETTTCCEEEEEECCSSCEE----EEEECSSSSE---EEEEETTSEEEEEEGGGTSEEE-------------EEEEC
T ss_pred EEEEECCCCcEEEEEecCCCCEE----EEEEeCCCCE---EEEEcCCCEEEEEECCCCceEE-------------EEEcC
Confidence 9999998722 455666766554 4899999996 7899999999999998874221 34667
Q ss_pred eccceeEEEEcC-Cc--eEEEEcCCcEEEEECCCCceEEEEe-eccCCeEEEEEEe--cCCEEEEEeCCCccccCcceEE
Q 046773 293 FTEFVGRVRVTS-HE--SAVACTSSRVITFDLRNQGMVLGER-GYGRGLYVTSVDV--NAEAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 293 h~~~v~~v~~s~-~~--~~vas~d~tIrlWDl~t~~~~~~~~-g~~~~~~v~~~~~--~g~~l~s~s~dg~~~~~~~~i~ 366 (453)
|..+|.+++|+| ++ +++++.|++|++||+.++....... .+...+...++++ ++..+++++.++ +++
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-------~i~ 211 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-------TIK 211 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS-------EEE
T ss_pred CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC-------EEE
Confidence 889999999998 44 4555678999999999876655543 3334555667777 788999999999 999
Q ss_pred EEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCC--EEEEE
Q 046773 367 VRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDR--HVAAS 441 (453)
Q Consensus 367 Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~--~lasg 441 (453)
+|+..+++++..+..|...+..+.++|++.++++++. ++|++||+.+++++.++..|.+. |+ +++|+++ .++++
T Consensus 212 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ 290 (814)
T 3mkq_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER-SWCIATHPTGRKNYIASG 290 (814)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSS-EEEEEECTTCGGGEEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCc-EEEEEEccCCCceEEEEE
Confidence 9999999999999988888999999999999988887 99999999999999999999888 87 5678887 46767
Q ss_pred eCCcEEEEecC
Q 046773 442 CGTNIHLWDFG 452 (453)
Q Consensus 442 ~D~~IklWDl~ 452 (453)
.|+.+.+|+++
T Consensus 291 ~~~~~~~~~~~ 301 (814)
T 3mkq_A 291 FDNGFTVLSLG 301 (814)
T ss_dssp ETTEEEEEECS
T ss_pred eCCCEEEEEcC
Confidence 88889999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=264.74 Aligned_cols=284 Identities=14% Similarity=0.108 Sum_probs=204.6
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCC-----CccccccceEEEEEEc---CCeE
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHS-----DRLGQFSRAVSGIIIT---DSQL 205 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~-----~~~~~~s~~V~~i~f~---g~~L 205 (453)
.+|..+ |+|++|++ ++||+|+.|++|+|||+.++++..++..... .....+...|.+++|. +..|
T Consensus 40 ~~h~~~----v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 40 RIHGGG----INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp CCCSSC----EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eccCCc----EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 379854 89999976 6999999999999999999987666541000 0000112368889885 4589
Q ss_pred EEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 206 IFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 206 asgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
++++.|++|++||+.+ + ...+. +...+ ..+.|+|.+.-...|++|+.|++|+|||+++++..
T Consensus 116 ~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---------- 179 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNT-LQTADVFN-FEETV----YSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS---------- 179 (408)
T ss_dssp EEEETTSEEEEEETTT-TEEEEEEE-CSSCE----EEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC----------
T ss_pred EEEeCCCeEEEeeCCC-Cccceecc-CCCce----eeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee----------
Confidence 9999999999999987 4 11111 22222 24678775432224889999999999999988732
Q ss_pred eeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCc-eEEEE---------------eeccCCeEEEEEEe
Q 046773 284 VMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQG-MVLGE---------------RGYGRGLYVTSVDV 344 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~-~~~~~---------------~g~~~~~~v~~~~~ 344 (453)
..+.+|...|.+++|+|++ +++++.|++|++||++++. ++... .+|...+...++++
T Consensus 180 ----~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 180 ----HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp ----EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred ----eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 3466788999999999876 3456678999999998865 22222 24444555556777
Q ss_pred cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC-----CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEE
Q 046773 345 NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-----DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMY 418 (453)
Q Consensus 345 ~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-----~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~ 418 (453)
+++.+++++.|+ .++||++.+++.+..+..+. ........+..+..++.++. ++|++||+.+++++.
T Consensus 256 ~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 256 DGLHLLTVGTDN-------RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT 328 (408)
T ss_dssp TSSEEEEEETTS-------CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred CCCEEEEecCCC-------eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence 888999999999 99999999887544332211 11111222223344554444 999999999999999
Q ss_pred EecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 419 SFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 419 tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++.+|.+. |. +|+||+++|+++ .|++|+|||+.
T Consensus 329 ~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 329 MLKGHYKT-VDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp EECCCSSC-EEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred eeccCCCe-EEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 99999998 87 678999999999 99999999985
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=264.56 Aligned_cols=247 Identities=13% Similarity=0.099 Sum_probs=185.7
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCC--eEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTR--LHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATL 210 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg--~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~ 210 (453)
.||..+ |.+++|++ ++|||||.|++|+|||+.++ +++.+|.+|.. .|.+++|+ ++.|++||.
T Consensus 58 ~~h~~~----v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~--------~v~~v~~sp~~~~l~s~s~ 125 (345)
T 3fm0_A 58 EGHQRT----VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN--------EVKSVAWAPSGNLLATCSR 125 (345)
T ss_dssp SSCSSC----EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSS--------CEEEEEECTTSSEEEEEET
T ss_pred cccCCc----EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCC--------CceEEEEeCCCCEEEEEEC
Confidence 489844 89999986 69999999999999999887 57899998764 58888885 678999999
Q ss_pred CCCEEEEEeecCC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceee
Q 046773 211 DGDIHVAVIDDVA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMG 286 (453)
Q Consensus 211 D~tIkvWd~~~~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~ 286 (453)
|++|+|||+.... +..+..|...+. .++|+|++++ |++|+.|++|+|||+++++...
T Consensus 126 D~~v~iwd~~~~~~~~~~~~~~~h~~~v~----~~~~~p~~~~---l~s~s~d~~i~~w~~~~~~~~~------------ 186 (345)
T 3fm0_A 126 DKSVWVWEVDEEDEYECVSVLNSHTQDVK----HVVWHPSQEL---LASASYDDTVKLYREEEDDWVC------------ 186 (345)
T ss_dssp TSCEEEEEECTTSCEEEEEEECCCCSCEE----EEEECSSSSC---EEEEETTSCEEEEEEETTEEEE------------
T ss_pred CCeEEEEECCCCCCeEEEEEecCcCCCeE----EEEECCCCCE---EEEEeCCCcEEEEEecCCCEEE------------
Confidence 9999999997622 233445655443 4899999996 8899999999999998876211
Q ss_pred eeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCC---------------ceEEEEee-ccCCeEEEEEEecCCE
Q 046773 287 WRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQ---------------GMVLGERG-YGRGLYVTSVDVNAEA 348 (453)
Q Consensus 287 w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~---------------~~~~~~~g-~~~~~~v~~~~~~g~~ 348 (453)
..++.+|...|.+|+|+|++ +++++.|++|||||+... .|+.+..+ |...+...++++++..
T Consensus 187 ~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 266 (345)
T 3fm0_A 187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA 266 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC
T ss_pred EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE
Confidence 13577899999999999876 455577899999997432 23333333 5555666667778889
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCe----eEE-----EEEecCCCeeEEEEeeCCC-eEEEEeC-CeEEEEECCCCeEE
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFE----EVC-----RFSLRADRNVNVMGCMNQG-YALMCVE-GVIRVWEVEGGEYM 417 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~----~v~-----~l~~~~~~v~~~~~~~~~~-~lls~s~-~tIrlWD~~tG~~l 417 (453)
+++++.|+ +++||+.+++. +.. .+..|...|..++++|++. .+++++. ++|+|||+.+++.+
T Consensus 267 l~s~~~d~-------~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 267 LATACGDD-------AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEEEETTS-------CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred EEEEeCCC-------eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 99999999 99999987642 111 1235677799999999874 7777777 99999999998876
Q ss_pred EEec
Q 046773 418 YSFR 421 (453)
Q Consensus 418 ~tL~ 421 (453)
..++
T Consensus 340 ~~~~ 343 (345)
T 3fm0_A 340 HHHH 343 (345)
T ss_dssp ----
T ss_pred cccc
Confidence 6543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-31 Score=263.39 Aligned_cols=247 Identities=12% Similarity=0.104 Sum_probs=200.2
Q ss_pred eEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceee
Q 046773 175 LHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWV 251 (453)
Q Consensus 175 ~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~ 251 (453)
++.++|.||.. .|.+++|+ +++|+|||.|++|+|||..+.. .+.+..|...+. .++|+|+|+.
T Consensus 55 ~~~~~l~gH~~--------~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~----~~~~sp~g~~-- 120 (354)
T 2pbi_B 55 KTRRTLKGHGN--------KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM----ACAYAPSGCA-- 120 (354)
T ss_dssp CEEEEEECCSS--------CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC----EEEECTTSSE--
T ss_pred EEEEEecCCCC--------eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEE----EEEECCCCCE--
Confidence 46788999765 68888885 6789999999999999987621 344555554443 5899999996
Q ss_pred EEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEE
Q 046773 252 GLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLG 329 (453)
Q Consensus 252 ~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~ 329 (453)
|++|+.|++|+||++.....- ........+.+|+..|.+++|+|++ +++++.|++|+|||+++++++..
T Consensus 121 -lasg~~d~~i~v~~~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~ 191 (354)
T 2pbi_B 121 -IACGGLDNKCSVYPLTFDKNE--------NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS 191 (354)
T ss_dssp -EEEESTTSEEEEEECCCCTTC--------CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred -EEEeeCCCCEEEEEEeccccc--------cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Confidence 889999999999999765310 0000013567899999999999876 56667889999999999988877
Q ss_pred EeeccCCeEEEEEEec--CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeE
Q 046773 330 ERGYGRGLYVTSVDVN--AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVI 406 (453)
Q Consensus 330 ~~g~~~~~~v~~~~~~--g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tI 406 (453)
+.+|...+...+++|+ ++.+++++.|+ ++++||+.+++++..+..|...+..+.++|++.++++++. ++|
T Consensus 192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg-------~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v 264 (354)
T 2pbi_B 192 FHGHGADVLCLDLAPSETGNTFVSGGCDK-------KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATC 264 (354)
T ss_dssp EECCSSCEEEEEECCCSSCCEEEEEETTS-------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EcCCCCCeEEEEEEeCCCCCEEEEEeCCC-------eEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeE
Confidence 7788776666666664 57899999999 9999999999999999999999999999999999998887 999
Q ss_pred EEEECCCCeEEEEecccC--CceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 407 RVWEVEGGEYMYSFRERI--GEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 407 rlWD~~tG~~l~tL~gh~--~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
||||+.+++++..+..+. .. +. +|+|++++|+++ .|++|+|||+.
T Consensus 265 ~lwd~~~~~~~~~~~~~~~~~~-~~~~~~s~~g~~l~~g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 265 RLYDLRADREVAIYSKESIIFG-ASSVDFSLSGRLLFAGYNDYTINVWDVL 314 (354)
T ss_dssp EEEETTTTEEEEEECCTTCCSC-EEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEECCCCcEEEEEcCCCcccc-eeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence 999999999888776543 23 44 788999999999 99999999973
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=276.19 Aligned_cols=280 Identities=14% Similarity=0.137 Sum_probs=212.5
Q ss_pred EEEEEecCC---EEEEE----------eCCCcEEEEECCCCe---EEEEecCCCCCccccccceEEEEEEc--CCeEEEE
Q 046773 147 CRCLTLSDL---YLACG----------FADGAVRLFDLTTRL---HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFA 208 (453)
Q Consensus 147 v~~lafs~~---~LaSG----------S~D~TIrlWD~~tg~---~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~Lasg 208 (453)
|.|++|+++ +||+| +.|++|+|||+.+++ ++.++. |. ..|.+++|+ +..|++|
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~--------~~v~~~~~s~~~~~l~~~ 85 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ-VD--------SKFNDLDWSHNNKIIAGA 85 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC-CS--------SCEEEEEECSSSSCEEEE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe-cC--------CceEEEEECCCCCeEEEE
Confidence 678899863 89999 999999999999997 444442 33 258888885 6789999
Q ss_pred eCCCCEEEEEeecC--C---cceEEeeecceecCceEEEEeCC-CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCc
Q 046773 209 TLDGDIHVAVIDDV--A---NETRTAHFGSVMDDGVLIDFTGC-SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHN 282 (453)
Q Consensus 209 S~D~tIkvWd~~~~--g---~~~~~~~~~~v~~~~~~v~Fs~d-g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~ 282 (453)
+.|++|+|||+... + ...+..|...+. .++|+|+ +++ |++|+.|++|+|||+++++.... ..
T Consensus 86 ~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~----~~~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~-----~~ 153 (416)
T 2pm9_A 86 LDNGSLELYSTNEANNAINSMARFSNHSSSVK----TVKFNAKQDNV---LASGGNNGEIFIWDMNKCTESPS-----NY 153 (416)
T ss_dssp ESSSCEEEECCSSTTSCCCEEEECCCSSSCCC----EEEECSSSTTB---EEEECSSSCEEBCBTTTTSSCTT-----TC
T ss_pred ccCCeEEEeecccccccccchhhccCCccceE----EEEEcCCCCCE---EEEEcCCCeEEEEECCCCccccc-----cc
Confidence 99999999999761 1 334445655543 5899999 665 88999999999999998751000 00
Q ss_pred ceeeeeeeeeeccceeEEEEcCC-c-e-EEEEcCCcEEEEECCCCceEEEEeec------cCCeEEEEEEecC-CEEEEE
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSH-E-S-AVACTSSRVITFDLRNQGMVLGERGY------GRGLYVTSVDVNA-EAYIVV 352 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~-~-~-~vas~d~tIrlWDl~t~~~~~~~~g~------~~~~~v~~~~~~g-~~l~s~ 352 (453)
.......+.+|...|.+++|+|+ . . ++++.|++|++||+++++++.....+ ...+...+|++++ ..++++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA 233 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence 00001224578889999999987 3 3 34456789999999998877665443 3344445566665 467887
Q ss_pred eCCCccccCcceEEEEEcCCC-eeEEEEE-ecCCCeeEEEEee-CCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceE
Q 046773 353 ENRELENQNRRLAIVRRVDTF-EEVCRFS-LRADRNVNVMGCM-NQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEV 428 (453)
Q Consensus 353 s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~-~~~~~v~~~~~~~-~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V 428 (453)
+.++ ++..++|||+.++ +++..+. .|...+..+.+++ ++.++++++. ++|+|||+.+++++.++.+|.+. |
T Consensus 234 ~~d~----~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-v 308 (416)
T 2pm9_A 234 TGSD----NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW-C 308 (416)
T ss_dssp ECCS----SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC-C
T ss_pred ECCC----CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc-e
Confidence 7764 2337999999986 5667777 7888899999999 7888888877 99999999999999999999988 7
Q ss_pred E--EEecCC-CEEEEE-eCCcEEEEecC
Q 046773 429 I--AFVGDD-RHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 429 ~--a~s~d~-~~lasg-~D~~IklWDl~ 452 (453)
. +|+||+ ++|+++ .|++|+|||+.
T Consensus 309 ~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 309 FKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp CCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred EEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 6 788998 799999 99999999985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=269.79 Aligned_cols=238 Identities=10% Similarity=0.020 Sum_probs=180.3
Q ss_pred CCCCCCCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEec----CCCCCccccccceEEEEEEc--CCeEEEEeC
Q 046773 138 DVDNPDGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFR----PQHSDRLGQFSRAVSGIIIT--DSQLIFATL 210 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~----gh~~~~~~~~s~~V~~i~f~--g~~LasgS~ 210 (453)
+|.. + |+|++|++ ..+++++.|++|||||+.+++++.++. +|. ..|.+++|+ ++.|++|+.
T Consensus 92 ~~~~--~--V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~--------~~V~~v~~spdg~~l~sgs~ 159 (357)
T 4g56_B 92 QTEA--G--VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHD--------DIVKTLSVFSDGTQAVSGGK 159 (357)
T ss_dssp ECSS--C--EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCS--------SCEEEEEECSSSSEEEEEET
T ss_pred CCCC--C--EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCC--------CCEEEEEECCCCCEEEEEeC
Confidence 5763 3 89999997 578889999999999999998765432 443 268888885 678999999
Q ss_pred CCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 211 DGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 211 D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
|++|+|||+++ + +..+.+|...+. .|+|+|+++. .|++++.|++|+|||+++++.... .
T Consensus 160 dg~v~iwd~~~-~~~~~~~~~h~~~v~----~v~~s~~~~~--~~~s~~~dg~v~~wd~~~~~~~~~------------~ 220 (357)
T 4g56_B 160 DFSVKVWDLSQ-KAVLKSYNAHSSEVN----CVAACPGKDT--IFLSCGEDGRILLWDTRKPKPATR------------I 220 (357)
T ss_dssp TSCEEEEETTT-TEEEEEECCCSSCEE----EEEECTTCSS--CEEEEETTSCEEECCTTSSSCBCB------------C
T ss_pred CCeEEEEECCC-CcEEEEEcCCCCCEE----EEEEccCCCc--eeeeeccCCceEEEECCCCceeee------------e
Confidence 99999999987 4 455666766554 4899999874 378999999999999999873210 1
Q ss_pred eeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC-EEEEEeCCCccccCcce
Q 046773 289 MLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE-AYIVVENRELENQNRRL 364 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~ 364 (453)
.+..|...+.+|+|+|+. +++++.|++|+|||+++++++.++.+|...+...+|+|++. .+++++.|+ +
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~-------~ 293 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC-------T 293 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS-------C
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC-------E
Confidence 123455778999999753 34456789999999999988777777776666666777764 578999999 9
Q ss_pred EEEEEcCCCeeEEEEEecCCCeeEEEEee-CCCeEEEEeC-CeEEEEECCCC
Q 046773 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCM-NQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 365 i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~-~~~~lls~s~-~tIrlWD~~tG 414 (453)
|+|||+++++++..+ .|.+.|..++|+| ++.++++++. ++|+|||+.+.
T Consensus 294 i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 294 VAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999887665 6888899999998 6788888887 99999999763
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-31 Score=257.58 Aligned_cols=240 Identities=12% Similarity=0.141 Sum_probs=184.8
Q ss_pred EEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC-C--cceEEeeecceecCceEEEEeCC--Ccee
Q 046773 178 RTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV-A--NETRTAHFGSVMDDGVLIDFTGC--SRYW 250 (453)
Q Consensus 178 ~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~-g--~~~~~~~~~~v~~~~~~v~Fs~d--g~~~ 250 (453)
.++.+|.. .|.+++|+ |++||+||.|++|+|||++.. + +.++.+|.+.|. .|+|+|+ |++
T Consensus 3 ~~~~~h~~--------~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~----~v~~s~~~~g~~- 69 (297)
T 2pm7_B 3 VIANAHNE--------MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW----RVDWAHPKFGTI- 69 (297)
T ss_dssp EECCSCSS--------CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE----EEEECCGGGCSE-
T ss_pred eeccCCcC--------ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE----EEEecCCCcCCE-
Confidence 45667654 68888886 789999999999999999741 1 467778877664 4899864 765
Q ss_pred eEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC--c--eEEEEcCCcEEEEECCCCce
Q 046773 251 VGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH--E--SAVACTSSRVITFDLRNQGM 326 (453)
Q Consensus 251 ~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~--~--~~vas~d~tIrlWDl~t~~~ 326 (453)
|+|||.|++|+|||+++++... ..++.+|...|.+|+|+|+ + +++++.|++|++||++++..
T Consensus 70 --l~s~s~D~~v~iWd~~~~~~~~------------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 70 --LASCSYDGKVMIWKEENGRWSQ------------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp --EEEEETTTEEEEEEBSSSCBCC------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred --EEEEcCCCEEEEEEcCCCceEE------------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 8999999999999999875100 1245678899999999985 2 46667889999999987642
Q ss_pred --EEEEeeccCCeEEEEEEec-------------CCEEEEEeCCCccccCcceEEEEEcCCCe----eEEEEEecCCCee
Q 046773 327 --VLGERGYGRGLYVTSVDVN-------------AEAYIVVENRELENQNRRLAIVRRVDTFE----EVCRFSLRADRNV 387 (453)
Q Consensus 327 --~~~~~g~~~~~~v~~~~~~-------------g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~----~v~~l~~~~~~v~ 387 (453)
...+.+|...+...+|+|+ +..+++++.|+ +|+|||..+++ .+.++..|.+.|.
T Consensus 136 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~-------~v~lwd~~~~~~~~~~~~~l~~H~~~V~ 208 (297)
T 2pm7_B 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-------LVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (297)
T ss_dssp BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTS-------CEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC-------cEEEEEEcCCCceEEEEEEecCCCCceE
Confidence 2334566655544455554 35899999999 99999998765 5667888888999
Q ss_pred EEEEeeCC---CeEEEEeC-CeEEEEECCCCe---EEEEe--cccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 388 NVMGCMNQ---GYALMCVE-GVIRVWEVEGGE---YMYSF--RERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 388 ~~~~~~~~---~~lls~s~-~tIrlWD~~tG~---~l~tL--~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+.++|++ .++++++. ++|+|||+.+++ ....+ .+|.+. |+ +|+||+++||++ .|++|+||+..
T Consensus 209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-LWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC-EEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCc-EEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999984 67777776 999999998753 22334 567777 87 678999999999 99999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-30 Score=257.84 Aligned_cols=238 Identities=11% Similarity=0.102 Sum_probs=186.2
Q ss_pred eEEEEecCCCCCccccccceEEEEEE--------cCCeEEEEeCCCCEEEEEeecC------C--cceEEeeecceecCc
Q 046773 175 LHVRTFRPQHSDRLGQFSRAVSGIII--------TDSQLIFATLDGDIHVAVIDDV------A--NETRTAHFGSVMDDG 238 (453)
Q Consensus 175 ~~~~tl~gh~~~~~~~~s~~V~~i~f--------~g~~LasgS~D~tIkvWd~~~~------g--~~~~~~~~~~v~~~~ 238 (453)
+++.+|+||.. .|.+++| ++..|+|||.|++|+|||+... + ..++.+|...|.
T Consensus 12 ~~~~~l~gH~~--------~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~--- 80 (343)
T 2xzm_R 12 VKRGILEGHSD--------WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS--- 80 (343)
T ss_dssp EEEEEEECCSS--------CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEE---
T ss_pred eeeeeeccchh--------hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceE---
Confidence 56788999765 6888988 5678999999999999999641 1 234556666554
Q ss_pred eEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcE
Q 046773 239 VLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRV 316 (453)
Q Consensus 239 ~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tI 316 (453)
.++|+|++++ |+|||.|++|+|||+++++.+ .++.+|...|.+|+|+|++ +++++.|++|
T Consensus 81 -~~~~~~~~~~---l~s~s~D~~v~lwd~~~~~~~--------------~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 81 -DLALSQENCF---AISSSWDKTLRLWDLRTGTTY--------------KRFVGHQSEVYSVAFSPDNRQILSAGAEREI 142 (343)
T ss_dssp -EEEECSSTTE---EEEEETTSEEEEEETTSSCEE--------------EEEECCCSCEEEEEECSSTTEEEEEETTSCE
T ss_pred -EEEECCCCCE---EEEEcCCCcEEEEECCCCcEE--------------EEEcCCCCcEEEEEECCCCCEEEEEcCCCEE
Confidence 4899999986 889999999999999998854 3567899999999999876 4556778999
Q ss_pred EEEECCCCceEEEE---eeccCCeEEEEEEecC----------CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC
Q 046773 317 ITFDLRNQGMVLGE---RGYGRGLYVTSVDVNA----------EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA 383 (453)
Q Consensus 317 rlWDl~t~~~~~~~---~g~~~~~~v~~~~~~g----------~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~ 383 (453)
+|||+.. .+.... .+|...+...+++|++ ..+++++.|+ +|+||| ..++....+..|.
T Consensus 143 ~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-------~i~iwd-~~~~~~~~~~~h~ 213 (343)
T 2xzm_R 143 KLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG-------RLKVWN-TNFQIRYTFKAHE 213 (343)
T ss_dssp EEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS-------EEEEEE-TTTEEEEEEECCS
T ss_pred EEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC-------EEEEEc-CCCceeEEEcCcc
Confidence 9999984 444433 2454444444555554 5789999999 999999 4567777888888
Q ss_pred CCeeEEEEeeCCCeEEEEeC-CeEEEEECC-CCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 384 DRNVNVMGCMNQGYALMCVE-GVIRVWEVE-GGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 384 ~~v~~~~~~~~~~~lls~s~-~tIrlWD~~-tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
..+..+.++|++.++++++. ++|+|||+. .+.+...+. +... |+ +|+|++++|+++.|+.|+|||+.
T Consensus 214 ~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~-v~~v~~sp~~~~la~~~d~~v~iw~~~ 284 (343)
T 2xzm_R 214 SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGST-INQIAFNPKLQWVAVGTDQGVKIFNLM 284 (343)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSC-EEEEEECSSSCEEEEEESSCEEEEESS
T ss_pred ccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCc-EEEEEECCCCCEEEEECCCCEEEEEeC
Confidence 88999999999999998887 999999994 445555553 3444 66 77899999887789999999974
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=264.43 Aligned_cols=239 Identities=15% Similarity=0.151 Sum_probs=185.8
Q ss_pred eEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEee
Q 046773 145 LTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 145 v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~ 220 (453)
.+|+|++|++ ++||||+.|++|+|||++++++++++.+|.. .|.+++|+ ++.|++||.|++|++||+.
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--------~v~~~~~~p~~~~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ--------DIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCC--------CEEEEEEcCCCCEEEEecCCCcEEEEECC
Confidence 3489999986 6999999999999999999999999998764 57888885 6789999999999999998
Q ss_pred cCCcceEE-eeecceecCceEEEEeC-CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 221 DVANETRT-AHFGSVMDDGVLIDFTG-CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 221 ~~g~~~~~-~~~~~v~~~~~~v~Fs~-dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
+ +..... .+...+ ..++|+| +|++ |++|+.|++|+|||+++++...- +... -....+|...|.
T Consensus 196 ~-~~~~~~~~~~~~v----~~~~~~~~~~~~---l~~~s~d~~v~iwd~~~~~~~~~--~~~~-----~~~~~~h~~~v~ 260 (393)
T 1erj_A 196 T-GQCSLTLSIEDGV----TTVAVSPGDGKY---IAAGSLDRAVRVWDSETGFLVER--LDSE-----NESGTGHKDSVY 260 (393)
T ss_dssp T-TEEEEEEECSSCE----EEEEECSTTCCE---EEEEETTSCEEEEETTTCCEEEE--EC-----------CCCSSCEE
T ss_pred C-CeeEEEEEcCCCc----EEEEEECCCCCE---EEEEcCCCcEEEEECCCCcEEEe--eccc-----ccCCCCCCCCEE
Confidence 7 411111 122222 2489999 7886 88999999999999999884320 0000 012357889999
Q ss_pred EEEEcCCc--eEEEEcCCcEEEEECCCC------------ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcce
Q 046773 299 RVRVTSHE--SAVACTSSRVITFDLRNQ------------GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRL 364 (453)
Q Consensus 299 ~v~~s~~~--~~vas~d~tIrlWDl~t~------------~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~ 364 (453)
+|+|+|++ +++++.|++|+|||+++. .|..+..+|...+...++++++..+++++.|+ +
T Consensus 261 ~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-------~ 333 (393)
T 1erj_A 261 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR-------G 333 (393)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS-------E
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC-------e
Confidence 99999876 455567899999999863 34445567766666666778889999999999 9
Q ss_pred EEEEEcCCCeeEEEEEecCCCeeEEEEee------CCCeEEEEeC-CeEEEEECCC
Q 046773 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCM------NQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 365 i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~------~~~~lls~s~-~tIrlWD~~t 413 (453)
++|||..+++++..+..|.+.|..+.+++ ++.++++++. ++|||||+..
T Consensus 334 v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99999999999999999998899998876 4567777776 9999999864
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=268.91 Aligned_cols=279 Identities=11% Similarity=0.138 Sum_probs=201.6
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe-----------EEEEecCCCCCcccc-----ccceEEEEEEcC----Ce
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL-----------HVRTFRPQHSDRLGQ-----FSRAVSGIIITD----SQ 204 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~-----------~~~tl~gh~~~~~~~-----~s~~V~~i~f~g----~~ 204 (453)
|+|++|++ ++||+|+.|++|+|||+.+++ ++.++.+|..+ +.. ....|.+++|++ ..
T Consensus 31 V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~V~~l~~~~~~~~~~ 109 (447)
T 3dw8_B 31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPE-FDYLKSLEIEEKINKIRWLPQKNAAQ 109 (447)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCE-EEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccccccc-ccccccccccCceEEEEEcCCCCcce
Confidence 89999986 699999999999999999988 68899987510 000 002477788863 47
Q ss_pred EEEEeCCCCEEEEEeecCCcc----------------------------------------e-EEeeecceecCceEEEE
Q 046773 205 LIFATLDGDIHVAVIDDVANE----------------------------------------T-RTAHFGSVMDDGVLIDF 243 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g~~----------------------------------------~-~~~~~~~v~~~~~~v~F 243 (453)
|++++.|++|++||+...... . ..+|...|. .++|
T Consensus 110 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~----~~~~ 185 (447)
T 3dw8_B 110 FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN----SISI 185 (447)
T ss_dssp EEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC----EEEE
T ss_pred EEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE----EEEE
Confidence 999999999999998751100 0 123443332 5899
Q ss_pred eCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEE
Q 046773 244 TGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITF 319 (453)
Q Consensus 244 s~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlW 319 (453)
+|+|++ |++| .|++|+|||++++. .+.--.+ .+ ..+.+|...|.+++|+|++ +++++.|++|++|
T Consensus 186 ~~~~~~---l~s~-~d~~i~iwd~~~~~~~~~~~~~-~~------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 186 NSDYET---YLSA-DDLRINLWHLEITDRSFNIVDI-KP------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp CTTSSE---EEEE-CSSEEEEEETTEEEEEEEEEEC-CC------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred cCCCCE---EEEe-CCCeEEEEECCCCCceeeeeec-cc------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 999996 7788 79999999998543 3210000 00 1356888999999999875 5566778999999
Q ss_pred ECCCCce----EEEEeeccC------------CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC-CeeEEEEEec
Q 046773 320 DLRNQGM----VLGERGYGR------------GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-FEEVCRFSLR 382 (453)
Q Consensus 320 Dl~t~~~----~~~~~g~~~------------~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~v~~l~~~ 382 (453)
|++++++ +..+.+|.. .+...+|++++..+++++. + +++|||+.+ ++++..+..|
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~-------~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L-------SVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S-------EEEEEETTCCSSCSCCEESC
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C-------eEEEEeCCCCccccceeecc
Confidence 9999875 444555543 4555667788889999888 8 999999997 8888888776
Q ss_pred CCC---------------eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccC----------------------
Q 046773 383 ADR---------------NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERI---------------------- 424 (453)
Q Consensus 383 ~~~---------------v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~---------------------- 424 (453)
... +..+.+++++.++++++. ++|+|||+.+++++ ++.+|.
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCccc
Confidence 421 123889999999988887 99999999999886 444442
Q ss_pred -----------CceEE--EEecCCCEEEEEeCCcEEEEec
Q 046773 425 -----------GEEVI--AFVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 425 -----------~~~V~--a~s~d~~~lasg~D~~IklWDl 451 (453)
.. |. +++|++.+||++..+.+.||.-
T Consensus 406 ~~~~~~~~~~~~~-i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKK-ILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSC-CCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred ccccccccccCCc-eeEEEECCCCCEEEEEecceeeeecc
Confidence 22 33 7889999999994446888864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-30 Score=271.73 Aligned_cols=292 Identities=10% Similarity=0.054 Sum_probs=215.6
Q ss_pred CCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEe-c---CCCCCccccccceEEEEEE-cCCeEEEEe
Q 046773 138 DVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTF-R---PQHSDRLGQFSRAVSGIII-TDSQLIFAT 209 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl-~---gh~~~~~~~~s~~V~~i~f-~g~~LasgS 209 (453)
+|.. .+..|.|++|++ ++|++|+.|++|+|||+.++++++++ . +|.. .|.+++| +++.|++++
T Consensus 201 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~l~~~~ 271 (615)
T 1pgu_A 201 THHK-QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG--------GIFALSWLDSQKFATVG 271 (615)
T ss_dssp SSSC-TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS--------CEEEEEESSSSEEEEEE
T ss_pred ccCC-CCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC--------ceEEEEEcCCCEEEEEc
Confidence 6774 000188999975 49999999999999999999999999 5 5543 5788888 678899999
Q ss_pred CCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---EEecccc------
Q 046773 210 LDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---VFVGGDL------ 278 (453)
Q Consensus 210 ~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---~~~g~~l------ 278 (453)
.|++|++||+.+ + +..+..+...+......+.|+ ++++ |++|+.|++|++||+.+++ .+.+|.-
T Consensus 272 ~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~ 346 (615)
T 1pgu_A 272 ADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVAT-GNGR---IISLSLDGTLNFYELGHDEVLKTISGHNKGITALT 346 (615)
T ss_dssp TTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEE-ETTE---EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred CCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeC-CCCe---EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence 999999999987 4 333333321111111235664 6665 7899999999999999876 2333210
Q ss_pred -------------------------------------------cCCcceeeeeeee------------------------
Q 046773 279 -------------------------------------------TDHNTVMGWRMLT------------------------ 291 (453)
Q Consensus 279 -------------------------------------------~~~~~v~~w~~l~------------------------ 291 (453)
..+..+..|..-.
T Consensus 347 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 426 (615)
T 1pgu_A 347 VNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 426 (615)
T ss_dssp TTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred ecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCC
Confidence 0011111121100
Q ss_pred -----------------eeccceeEEEEcCCceEEEEc-CCcEEEEECCCCceE-EEEeeccCCeEEEEEEecCCEEEEE
Q 046773 292 -----------------EFTEFVGRVRVTSHESAVACT-SSRVITFDLRNQGMV-LGERGYGRGLYVTSVDVNAEAYIVV 352 (453)
Q Consensus 292 -----------------~h~~~v~~v~~s~~~~~vas~-d~tIrlWDl~t~~~~-~~~~g~~~~~~v~~~~~~g~~l~s~ 352 (453)
.|...+.+++|+++.+++++. |++|++||+.++... ....+|...+...+|+++++.++++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 506 (615)
T 1pgu_A 427 DDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG 506 (615)
T ss_dssp SEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE
T ss_pred CceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEc
Confidence 133455666666444555566 778888888875433 2234555555556677889999999
Q ss_pred eCCCccccCcceEEEEEcCCCeeEEEEEe-cCCCeeEEEEee----------CCCeEEEEeC-CeEEEEECCCC-eEEEE
Q 046773 353 ENRELENQNRRLAIVRRVDTFEEVCRFSL-RADRNVNVMGCM----------NQGYALMCVE-GVIRVWEVEGG-EYMYS 419 (453)
Q Consensus 353 s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~-~~~~v~~~~~~~----------~~~~lls~s~-~tIrlWD~~tG-~~l~t 419 (453)
+.|+ .++||++.+++++..+.. |...+..+.++| ++.++++++. ++|+|||++++ +++.+
T Consensus 507 ~~dg-------~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 579 (615)
T 1pgu_A 507 DVMG-------KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA 579 (615)
T ss_dssp ETTS-------CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred CCCC-------eEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh
Confidence 9999 999999999999888876 888899999999 8999988887 99999999998 89999
Q ss_pred ecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 420 FRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 420 L~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+.+|.+. |+ +|+||++ |+++ .|++|+|||+.
T Consensus 580 ~~~h~~~-v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 580 LNAHKDG-VNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp TTSSTTC-EEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred hhcCccc-eEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 9999988 87 6789999 9998 99999999985
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.98 E-value=7.7e-30 Score=249.12 Aligned_cols=243 Identities=12% Similarity=0.157 Sum_probs=197.0
Q ss_pred CeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCcee
Q 046773 174 RLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYW 250 (453)
Q Consensus 174 g~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~ 250 (453)
.....+|.+|.. .|.+++|+ ++.|++|+.|++|+||++.+.. ...+..|...+. .++|+|++++
T Consensus 13 ~~~~~~~~gh~~--------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~----~~~~~~~~~~- 79 (312)
T 4ery_A 13 YALKFTLAGHTK--------AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS----DVAWSSDSNL- 79 (312)
T ss_dssp CEEEEEECCCSS--------CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE----EEEECTTSSE-
T ss_pred ceeEEEEcccCC--------cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceE----EEEEcCCCCE-
Confidence 345678888764 68888886 6789999999999999987622 345555665543 4899999986
Q ss_pred eEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEE
Q 046773 251 VGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVL 328 (453)
Q Consensus 251 ~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~ 328 (453)
|++|+.|++|+|||+++++.. ..+.+|...|.++.|+|++ +++++.|++|++||+++++++.
T Consensus 80 --l~s~~~d~~i~vwd~~~~~~~--------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 143 (312)
T 4ery_A 80 --LVSASDDKTLKIWDVSSGKCL--------------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143 (312)
T ss_dssp --EEEEETTSEEEEEETTTCCEE--------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred --EEEECCCCEEEEEECCCCcEE--------------EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE
Confidence 889999999999999998853 3467888999999999876 4555678999999999998877
Q ss_pred EEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec-CCCeeEEEEeeCCCeEEEEeC-CeE
Q 046773 329 GERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR-ADRNVNVMGCMNQGYALMCVE-GVI 406 (453)
Q Consensus 329 ~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~-~~~v~~~~~~~~~~~lls~s~-~tI 406 (453)
.+..|...+...+++++++.+++++.|+ .++|||..+++++..+... ...+..+.+++++.++++++. ++|
T Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
T 4ery_A 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDG-------LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTS-------CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred EecCCCCcEEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 7766766666666778888999999999 9999999999888776433 344778889999999998887 999
Q ss_pred EEEECCCCeEEEEecccCCce--EE-EEe-cCCCEEEEE-eCCcEEEEecC
Q 046773 407 RVWEVEGGEYMYSFRERIGEE--VI-AFV-GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 407 rlWD~~tG~~l~tL~gh~~~~--V~-a~s-~d~~~lasg-~D~~IklWDl~ 452 (453)
+|||+.+++++..+.+|.... +. .++ +++++|+++ .|++|+|||+.
T Consensus 217 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 217 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp EEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred EEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 999999999999999987641 21 344 678899999 99999999975
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-30 Score=252.57 Aligned_cols=287 Identities=11% Similarity=-0.001 Sum_probs=191.0
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCC----eEEEEecCCCCCccccccceEEEEEEc----CCeEE
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTR----LHVRTFRPQHSDRLGQFSRAVSGIIIT----DSQLI 206 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg----~~~~tl~gh~~~~~~~~s~~V~~i~f~----g~~La 206 (453)
.||.++ |+|++|++ ++||+|+.|++|+|||+.++ +++.++.+|.. .|.+++|+ ++.|+
T Consensus 8 ~gH~~~----v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~d~~~l~ 75 (351)
T 3f3f_A 8 SGHDDL----VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS--------SIVAIDWASPEYGRIIA 75 (351)
T ss_dssp CCCSSC----EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS--------CEEEEEECCGGGCSEEE
T ss_pred cccccc----eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC--------cEEEEEEcCCCCCCEEE
Confidence 489855 89999986 69999999999999999988 57788887654 68889885 67899
Q ss_pred EEeCCCCEEEEEeecCC----------cceEEeeecceecCceEEEEeCC--CceeeEEEEeeCCCeEEEeeCCCCcEEe
Q 046773 207 FATLDGDIHVAVIDDVA----------NETRTAHFGSVMDDGVLIDFTGC--SRYWVGLYAGLAGRAFHIWDRQAEEVFV 274 (453)
Q Consensus 207 sgS~D~tIkvWd~~~~g----------~~~~~~~~~~v~~~~~~v~Fs~d--g~~~~~LaSgS~D~tIrvWD~~tg~~~~ 274 (453)
+|+.|++|+|||+++.. ...+..|...+. .++|+|+ +++ |++|+.|++|+|||+++++...
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~---l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY----SVKFAPAHLGLK---LACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEE----EEEECCGGGCSE---EEEEETTCEEEEEECSSTTCTT
T ss_pred EEcCCCeEEEEecCCCcccccccCcceeeeecccCCcee----EEEEcCCCCCcE---EEEecCCCcEEEecCCChHHhc
Confidence 99999999999998621 223334544443 4899999 886 8899999999999999887211
Q ss_pred cccccCCcceeee-eeeeeeccceeEEEEcCC---c--eEEEEcCCcEEEEECCCCce--EEEEeeccCCeEEEEEEecC
Q 046773 275 GGDLTDHNTVMGW-RMLTEFTEFVGRVRVTSH---E--SAVACTSSRVITFDLRNQGM--VLGERGYGRGLYVTSVDVNA 346 (453)
Q Consensus 275 g~~l~~~~~v~~w-~~l~~h~~~v~~v~~s~~---~--~~vas~d~tIrlWDl~t~~~--~~~~~g~~~~~~v~~~~~~g 346 (453)
--.+. ...... ....+|...+.++.++|+ . +++++.++.+.+|+..++.. +....+|...+...++++++
T Consensus 149 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 149 SWTLT--SEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI 226 (351)
T ss_dssp CCEEE--EEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred ccccc--ccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence 00000 000000 011256778899999874 3 45556678888888887654 23335666555555666776
Q ss_pred ----CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE----eC-CeEEEEECCCCeEE
Q 046773 347 ----EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC----VE-GVIRVWEVEGGEYM 417 (453)
Q Consensus 347 ----~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~----s~-~tIrlWD~~tG~~l 417 (453)
+.+++++.|+ +|+||++.++.+.................+.......+ .. ..+++|+..+++++
T Consensus 227 ~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (351)
T 3f3f_A 227 GRWYQLIATGCKDG-------RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL 299 (351)
T ss_dssp SCSSEEEEEEETTS-------CEEEEEEEECC---------------------------------------CCSEEEEEE
T ss_pred CCcceEEEEEcCCC-------eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEE
Confidence 5799999999 99999998765433222111111111111111111111 12 67888998899999
Q ss_pred EEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 418 YSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 418 ~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.++.+|.+. |+ +|+||+++|+++ .|++|+|||+.
T Consensus 300 ~~~~~h~~~-v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 300 SEHDDHNGE-VWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp EEECTTSSC-EEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEeccccc-EEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 999999999 88 678999999999 99999999975
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=7.8e-30 Score=260.93 Aligned_cols=251 Identities=12% Similarity=0.128 Sum_probs=198.4
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEE
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIH 215 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIk 215 (453)
+|.+. |+||+|++ ++||+|+.|++|+|||++++++++++.+|.. .+.++++++..|++|+.|++++
T Consensus 145 ~~~~~----V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~--------~v~~~s~~~~~l~sgs~d~~i~ 212 (420)
T 4gga_A 145 QPGEY----ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA--------RVGSLSWNSYILSSGSRSGHIH 212 (420)
T ss_dssp STTCC----EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEEEEEEETTEEEEEETTSEEE
T ss_pred CCCCc----EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCC--------ceEEEeeCCCEEEEEeCCCcee
Confidence 66633 89999986 6999999999999999999999999998764 5788999999999999999999
Q ss_pred EEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee
Q 046773 216 VAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 216 vWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
+||..... +.++.+|...+. .+.|+|+|++ |++++.|++|+|||..+++... ........|
T Consensus 213 ~~d~~~~~~~~~~~~~h~~~~~----~~~~~~~g~~---l~s~~~D~~v~i~~~~~~~~~~----------~~~~~~~~~ 275 (420)
T 4gga_A 213 HHDVRVAEHHVATLSGHSQEVC----GLRWAPDGRH---LASGGNDNLVNVWPSAPGEGGW----------VPLQTFTQH 275 (420)
T ss_dssp EEETTSSSCEEEEEECCSSCEE----EEEECTTSSE---EEEEETTSCEEEEESSCCSSCS----------CCSEEECCC
T ss_pred EeeecccceeeEEeccccccee----eeeecCCCCe---eeeeeccccceEEeeccccccc----------eeeeeeccc
Confidence 99987632 355566665543 4889999996 8899999999999999876210 001345678
Q ss_pred ccceeEEEEcCCc---eEEEE--cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEe--CCCccccCcceEE
Q 046773 294 TEFVGRVRVTSHE---SAVAC--TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVE--NRELENQNRRLAI 366 (453)
Q Consensus 294 ~~~v~~v~~s~~~---~~vas--~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s--~dg~~~~~~~~i~ 366 (453)
...|.+++|+|.. +++++ .|++||+||+.+++++.....+. .+....+.++++.+++++ .|+ +|+
T Consensus 276 ~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~-------~I~ 347 (420)
T 4gga_A 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQN-------QLV 347 (420)
T ss_dssp SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTC-------CEE
T ss_pred CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecCCC-------EEE
Confidence 8899999998754 23333 47899999999998776654433 444556788889998877 456 999
Q ss_pred EEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCC
Q 046773 367 VRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIG 425 (453)
Q Consensus 367 Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~ 425 (453)
|||..+++++.++.+|.+.|..++++|++.++++++. ++|||||+.+..+.+..+.+..
T Consensus 348 iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~ 407 (420)
T 4gga_A 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKA 407 (420)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--------
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccC
Confidence 9999999999999999999999999999999999887 9999999988777666554443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=266.51 Aligned_cols=272 Identities=13% Similarity=0.085 Sum_probs=219.8
Q ss_pred CCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCC----eEEEEecCCCCCccccccce-EEEEEEcC----Ce
Q 046773 136 PSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTR----LHVRTFRPQHSDRLGQFSRA-VSGIIITD----SQ 204 (453)
Q Consensus 136 ~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg----~~~~tl~gh~~~~~~~~s~~-V~~i~f~g----~~ 204 (453)
+..|... |.|++|++ ++||+++ |++|+|||++++ +++++|.+|.. . |.+++|++ +.
T Consensus 14 ~~~~~~~----v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~--------~~v~~~~~sp~~~~~~ 80 (615)
T 1pgu_A 14 PSTQRNF----TTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGS--------SVVTTVKFSPIKGSQY 80 (615)
T ss_dssp CCCCTTC----CCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTT--------SCEEEEEECSSTTCCE
T ss_pred CCCccCc----eeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCC--------ceEEEEEECcCCCCCE
Confidence 4467633 78899986 6899998 889999999999 99999998764 6 78888754 78
Q ss_pred EEEEeCCCCEEEEEeecC-------C--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCC----CeEEEeeCCCCc
Q 046773 205 LIFATLDGDIHVAVIDDV-------A--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG----RAFHIWDRQAEE 271 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~-------g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D----~tIrvWD~~tg~ 271 (453)
|++|+.|++|+|||+.+. . ...+..|...+. .++|+|+|++ |++++.| +.|++|| +++
T Consensus 81 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~s~~~~~---l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS----DISWDFEGRR---LCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE----EEEECTTSSE---EEEEECCSSCSEEEEETT--TCC
T ss_pred EEEecCCCEEEEEeCCCCcccccccccccchhhcccccEE----EEEEeCCCCE---EEEeccCCCCccEEEEEE--CCC
Confidence 999999999999999641 1 233444544443 4899999997 7788877 6899999 444
Q ss_pred EEecccccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccC---CeEEEEEEec
Q 046773 272 VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGR---GLYVTSVDVN 345 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~---~~~v~~~~~~ 345 (453)
.. ..+.+|...|.+++|+|++ +++++.|++|++||+++++++..+.+|.. .+...+|+++
T Consensus 152 ~~--------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 217 (615)
T 1pgu_A 152 SL--------------GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 217 (615)
T ss_dssp EE--------------EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred cc--------------eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCC
Confidence 32 3466888999999999876 45557789999999999887777777766 5666677788
Q ss_pred -CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE-E---ecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEE
Q 046773 346 -AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF-S---LRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYS 419 (453)
Q Consensus 346 -g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-~---~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~t 419 (453)
++.+++++.|+ .++||++.+++.+..+ . .|...+..+.++ ++.++++++. ++|++||+.+++++.+
T Consensus 218 ~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~ 289 (615)
T 1pgu_A 218 SGEFVITVGSDR-------KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQK 289 (615)
T ss_dssp TCCEEEEEETTC-------CEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCC-------eEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 88999999999 9999999999999888 5 777889999999 8889888887 9999999999999999
Q ss_pred ecccC----CceEEE-EecCCCEEEEE-eCCcEEEEecC
Q 046773 420 FRERI----GEEVIA-FVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 420 L~gh~----~~~V~a-~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+..+. .. +.+ ..+++++|+++ .|+.|++||+.
T Consensus 290 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 290 WTLDKQQLGNQ-QVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp EECCTTCGGGC-EEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EcCCCCcccCc-eeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 98773 34 443 33588999999 99999999974
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=289.45 Aligned_cols=205 Identities=10% Similarity=0.061 Sum_probs=157.2
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-CCeEEEEeCCCCE
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDI 214 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-g~~LasgS~D~tI 214 (453)
||..+ |+|++|++ ++||+|+.|++|||||..+++++.++. |.. .|.+++|+ ++.|+++|.|++|
T Consensus 15 gh~~~----V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~--------~V~~l~fspg~~L~S~s~D~~v 81 (902)
T 2oaj_A 15 GMSSK----PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRS--------AIKEMRFVKGIYLVVINAKDTV 81 (902)
T ss_dssp ECSSC----EEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCC--------CEEEEEEETTTEEEEEETTCEE
T ss_pred CCCCC----cEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCC--------CEEEEEEcCCCEEEEEECcCeE
Confidence 78744 88999986 699999999999999999999887764 332 58889887 5669999999999
Q ss_pred EEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee---ee
Q 046773 215 HVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW---RM 289 (453)
Q Consensus 215 kvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w---~~ 289 (453)
+|||+++ + +.++. |.+.+. .++|+|++++ |++|+.|++|+|||++++++..- .. + ..| ..
T Consensus 82 ~lWd~~~-~~~~~~~~-~~~~V~----~v~~sp~g~~---l~sgs~dg~V~lwd~~~~~~~~~-~i--~---~~~~~~~~ 146 (902)
T 2oaj_A 82 YVLSLYS-QKVLTTVF-VPGKIT----SIDTDASLDW---MLIGLQNGSMIVYDIDRDQLSSF-KL--D---NLQKSSFF 146 (902)
T ss_dssp EEEETTT-CSEEEEEE-CSSCEE----EEECCTTCSE---EEEEETTSCEEEEETTTTEEEEE-EE--C---CHHHHHTC
T ss_pred EEEECCC-CcEEEEEc-CCCCEE----EEEECCCCCE---EEEEcCCCcEEEEECCCCccccc-ee--c---cccccccc
Confidence 9999987 4 23332 333332 5899999997 88999999999999999874210 00 0 001 23
Q ss_pred eeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeec------------------cCCeEEEEEEecCCE
Q 046773 290 LTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGY------------------GRGLYVTSVDVNAEA 348 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~------------------~~~~~v~~~~~~g~~ 348 (453)
+.+|.++|.+|+|+|+. +++++.|++| |||+++++++.++.+| ...+...+|+|+|..
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 56889999999999963 4555667899 9999998877666544 233455567788889
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCeeEEE
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFEEVCR 378 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~ 378 (453)
+++++.|+ +|+|||+.+++++..
T Consensus 226 lasgs~Dg-------~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 226 IITIHEDN-------SLVFWDANSGHMIMA 248 (902)
T ss_dssp EEEEETTC-------CEEEEETTTCCEEEE
T ss_pred EEEEECCC-------eEEEEECCCCcEEEE
Confidence 99999999 999999998877653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=256.99 Aligned_cols=232 Identities=12% Similarity=0.107 Sum_probs=177.9
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCC--CceeeEEEEeeCCCeEEEee
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGC--SRYWVGLYAGLAGRAFHIWD 266 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~d--g~~~~~LaSgS~D~tIrvWD 266 (453)
.|.+++|+ |++||+||.|++|+|||+.+.. +.++.+|.+.|. .|+|+|+ |++ |+|||.|++|+|||
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~----~v~~~~~~~~~~---l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW----QVAWAHPMYGNI---LASCSYDRKVIIWR 87 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE----EEEECCGGGSSC---EEEEETTSCEEEEC
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE----EEEeCCCCCCCE---EEEEECCCEEEEEE
Confidence 68888885 7899999999999999998721 345677877664 4899863 775 89999999999999
Q ss_pred CCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC--c--eEEEEcCCcEEEEECCCCceE---EEEeeccCCeEE
Q 046773 267 RQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH--E--SAVACTSSRVITFDLRNQGMV---LGERGYGRGLYV 339 (453)
Q Consensus 267 ~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~--~--~~vas~d~tIrlWDl~t~~~~---~~~~g~~~~~~v 339 (453)
+++++... ..++.+|...|++|+|+|+ + +++++.|++|+|||+++++.. ....+|...+..
T Consensus 88 ~~~~~~~~------------~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 88 EENGTWEK------------SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp CSSSCCCE------------EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred CCCCcceE------------EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 99875100 1346688999999999986 3 455567899999999976422 112455444433
Q ss_pred EEEEec-----------------CCEEEEEeCCCccccCcceEEEEEcCCC---eeEEEEEecCCCeeEEEEeeCC----
Q 046773 340 TSVDVN-----------------AEAYIVVENRELENQNRRLAIVRRVDTF---EEVCRFSLRADRNVNVMGCMNQ---- 395 (453)
Q Consensus 340 ~~~~~~-----------------g~~l~s~s~dg~~~~~~~~i~Iw~~~tg---~~v~~l~~~~~~v~~~~~~~~~---- 395 (453)
.+++|+ +..+++++.|+ +|+||+..++ +++.++..|.+.|+.+.++|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~-------~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~ 228 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN-------LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT 228 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTS-------BCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSC
T ss_pred EEEccccCCccccccccccCccccceEEEecCCC-------eEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCC
Confidence 445554 35789999999 9999999765 4667788888889999999976
Q ss_pred CeEEEEeC-CeEEEEECCCC---e-EEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 396 GYALMCVE-GVIRVWEVEGG---E-YMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 396 ~~lls~s~-~tIrlWD~~tG---~-~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.++++++. ++|+|||+.++ + ....+.+|.+. |+ +|+||+++||++ .|++|+||+..
T Consensus 229 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV-VWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC-EEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc-EEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 67777776 99999999873 2 23456678887 87 678999999999 99999999964
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=287.28 Aligned_cols=293 Identities=7% Similarity=-0.012 Sum_probs=202.5
Q ss_pred CCCCCCCCeEEEEEEecCC---EEEEEeCCCcEEEEECCCCeEEEEecCCCCC----------ccccccceEEEEEEc--
Q 046773 137 SDVDNPDGLTCRCLTLSDL---YLACGFADGAVRLFDLTTRLHVRTFRPQHSD----------RLGQFSRAVSGIIIT-- 201 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~~---~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~----------~~~~~s~~V~~i~f~-- 201 (453)
.+|..+ |++++|+++ +|++|+.|++| |||+.++++++++.+|... ....+...|.+++|+
T Consensus 148 ~~h~~~----V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd 222 (902)
T 2oaj_A 148 AARLSP----IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222 (902)
T ss_dssp SSCCCC----CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred ccCCCC----eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence 478744 889999973 89999999999 9999999999999876110 000112368888885
Q ss_pred CCeEEEEeCCCCEEEEEeecCCcceEE--------ee-------------ecceecCceEEEEe----CCCceeeEEEEe
Q 046773 202 DSQLIFATLDGDIHVAVIDDVANETRT--------AH-------------FGSVMDDGVLIDFT----GCSRYWVGLYAG 256 (453)
Q Consensus 202 g~~LasgS~D~tIkvWd~~~~g~~~~~--------~~-------------~~~v~~~~~~v~Fs----~dg~~~~~LaSg 256 (453)
|..|++|+.|++|++||+.+ | ..+. +| ...| ..|+|+ ||+.. .|++|
T Consensus 223 g~~lasgs~Dg~i~lWd~~~-g-~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V----~~v~w~~~~~pd~~~--ll~sg 294 (902)
T 2oaj_A 223 SLHIITIHEDNSLVFWDANS-G-HMIMARTVFETEINVPQPDYIRDSSTNAAKI----SKVYWMCENNPEYTS--LLISH 294 (902)
T ss_dssp SSEEEEEETTCCEEEEETTT-C-CEEEEECSSCSCTTSCCTTCCCCCSSCCCEE----EEEEEEECSSTTEEE--EEEEE
T ss_pred CCEEEEEECCCeEEEEECCC-C-cEEEEEeecccccCCCCCcCCCCCccccCCe----eEEEEEecCCCCCCE--EEEeC
Confidence 67899999999999999976 4 1111 11 1111 124452 33211 13344
Q ss_pred ----------------------------------------------------------------------------eCCC
Q 046773 257 ----------------------------------------------------------------------------LAGR 260 (453)
Q Consensus 257 ----------------------------------------------------------------------------S~D~ 260 (453)
+.|+
T Consensus 295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg 374 (902)
T 2oaj_A 295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG 374 (902)
T ss_dssp ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred CCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCC
Confidence 4445
Q ss_pred eEEEeeCCCCcEEec----c-cccCC-ccee---------------------eeeeeeeeccceeEEEEcCCc--eEEEE
Q 046773 261 AFHIWDRQAEEVFVG----G-DLTDH-NTVM---------------------GWRMLTEFTEFVGRVRVTSHE--SAVAC 311 (453)
Q Consensus 261 tIrvWD~~tg~~~~g----~-~l~~~-~~v~---------------------~w~~l~~h~~~v~~v~~s~~~--~~vas 311 (453)
+|++||+.+|+.... + .+..+ ..+. .-..|.+|...+.+|+|+|++ +++++
T Consensus 375 ~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs 454 (902)
T 2oaj_A 375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH 454 (902)
T ss_dssp CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE
T ss_pred cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEec
Confidence 555555544431100 0 00000 0000 001355666677777788766 45567
Q ss_pred cCCcEEEEECCCCceE----EEE--e-----eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC-------
Q 046773 312 TSSRVITFDLRNQGMV----LGE--R-----GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF------- 373 (453)
Q Consensus 312 ~d~tIrlWDl~t~~~~----~~~--~-----g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg------- 373 (453)
.|++|||||+.++... ... . +|...+...+|+|++..+|+++.|+ +|+||+++++
T Consensus 455 ~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dg-------tV~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 455 SNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETG-------DVVLFKYEVNQFYSVEN 527 (902)
T ss_dssp TTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTS-------CEEEEEEEECCC-----
T ss_pred CCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCc-------EEEEEEecCccccCccc
Confidence 8999999999987321 111 1 5655666677888899999999999 9999999876
Q ss_pred --------------------------------------eeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 374 --------------------------------------EEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 374 --------------------------------------~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
+++.++..|...|.+++|+|++ ++++++. ++|+|||++++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 3467788888899999999999 8888887 99999999998
Q ss_pred eEEE-----Eec-ccCCceEE--EEe-----cCC---CEEEEE-eCCcEEEEec
Q 046773 415 EYMY-----SFR-ERIGEEVI--AFV-----GDD---RHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 415 ~~l~-----tL~-gh~~~~V~--a~s-----~d~---~~lasg-~D~~IklWDl 451 (453)
+.++ .+. ||.+. |+ +|+ ||| ++|++| .|++|++||+
T Consensus 607 ~~~~~~~~~~~~~gh~~~-V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 607 AIIYMENIREISGAQSAC-VTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEEEGGGTCSSCCCC-EEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred eEEEEeehhHhccccccc-eEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 7765 343 89888 88 788 885 799999 9999999997
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=260.14 Aligned_cols=237 Identities=13% Similarity=0.174 Sum_probs=190.9
Q ss_pred CCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEE
Q 046773 138 DVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVA 217 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvW 217 (453)
||..+ |.|++|++++||+|+.|++|+|||+.+++++.++.+|.. .|.+++|++..|++|+.|++|++|
T Consensus 171 ~h~~~----v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--------~v~~l~~~~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 171 GHTGS----VLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE--------AVLHLRFNNGMMVTCSKDRSIAVW 238 (435)
T ss_dssp CCSSC----EEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCS--------CEEEEECCTTEEEEEETTSCEEEE
T ss_pred CCCCc----EEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC--------cEEEEEEcCCEEEEeeCCCcEEEE
Confidence 78744 899999999999999999999999999999999998654 688899999999999999999999
Q ss_pred EeecCC-c---ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee
Q 046773 218 VIDDVA-N---ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 218 d~~~~g-~---~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
|+.+.. . ..+.+|...+. .++| ++++ |++|+.|++|+|||+++++.+ .++.+|
T Consensus 239 d~~~~~~~~~~~~~~~~~~~v~----~~~~--~~~~---l~s~~~dg~i~vwd~~~~~~~--------------~~~~~~ 295 (435)
T 1p22_A 239 DMASPTDITLRRVLVGHRAAVN----VVDF--DDKY---IVSASGDRTIKVWNTSTCEFV--------------RTLNGH 295 (435)
T ss_dssp ECSSSSCCEEEEEECCCSSCEE----EEEE--ETTE---EEEEETTSEEEEEETTTCCEE--------------EEEECC
T ss_pred eCCCCCCceeeeEecCCCCcEE----EEEe--CCCE---EEEEeCCCeEEEEECCcCcEE--------------EEEcCC
Confidence 998722 2 33444554443 3666 5554 889999999999999998853 346688
Q ss_pred ccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 294 TEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 294 ~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
...|.++.++++.+++++.|++|++||+++++++..+.+|. ..|.++.++++.+++++.|+ +|+|||+.++
T Consensus 296 ~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~l~sg~~dg-------~i~vwd~~~~ 366 (435)
T 1p22_A 296 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRFDNKRIVSGAYDG-------KIKVWDLVAA 366 (435)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEECCSSEEEEEETTS-------CEEEEEHHHH
T ss_pred CCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEecCCEEEEEeCCC-------cEEEEECCCC
Confidence 89999999988777888889999999999998887776654 45788888999999999999 9999998766
Q ss_pred e---------eEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEe
Q 046773 374 E---------EVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 374 ~---------~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL 420 (453)
+ ++..+..|...+..+.+ ++.++++++. ++|+|||+.++......
T Consensus 367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 367 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE 421 (435)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----------
T ss_pred CCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccC
Confidence 5 78888888888888877 6778888776 99999999987665443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=239.02 Aligned_cols=240 Identities=13% Similarity=0.141 Sum_probs=191.3
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEE
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIH 215 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIk 215 (453)
+|... |+|++|++ ++|||||.|++|+|||++++++++++.+|.. .+.++++++..|++|+.|+.++
T Consensus 65 ~~~~~----V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~--------~~~~~~~~~~~l~s~~~~~~~~ 132 (318)
T 4ggc_A 65 QPGEY----ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA--------RVGSLSWNSYILSSGSRSGHIH 132 (318)
T ss_dssp STTCC----EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------CEEEEEEETTEEEEEETTSEEE
T ss_pred CCCCe----EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccc--------eEEEeecCCCEEEEEecCCceE
Confidence 66633 89999986 6999999999999999999999999998764 4667888999999999999999
Q ss_pred EEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee
Q 046773 216 VAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 216 vWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
+|+..... +..+.+|...+. .+.|+++|+. |++++.|++|+|||+++++... ........|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---l~s~~~d~~i~iwd~~~~~~~~----------~~~~~~~~~ 195 (318)
T 4ggc_A 133 HHDVRVAEHHVATLSGHSQEVC----GLRWAPDGRH---LASGGNDNLVNVWPSAPGEGGW----------VPLQTFTQH 195 (318)
T ss_dssp EEETTSSSCEEEEEECCSSCEE----EEEECTTSSE---EEEEETTSCEEEEESSCBTTBS----------CCSEEECCC
T ss_pred eeecCCCceeEEEEcCccCceE----EEEEcCCCCE---EEEEecCcceeEEECCCCcccc----------cceeeeccc
Confidence 99987622 344555655443 4789999986 8899999999999999876210 001234456
Q ss_pred ccceeEEEEcCCc---eEEEE--cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEe--CCCccccCcceEE
Q 046773 294 TEFVGRVRVTSHE---SAVAC--TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVE--NRELENQNRRLAI 366 (453)
Q Consensus 294 ~~~v~~v~~s~~~---~~vas--~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s--~dg~~~~~~~~i~ 366 (453)
...|.++.+.+.. +.+++ .+++|+|||.++..+.... .+.......++.+.++.+++++ .|+ +|+
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~-------~i~ 267 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQN-------QLV 267 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTC-------CEE
T ss_pred CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCC-------EEE
Confidence 6788888887643 23333 3578999999987765443 3445566777889999988876 456 999
Q ss_pred EEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 367 VRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 367 Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
|||+.+++++.++.+|.+.|..+.++|++.++++++. ++|||||+.+.
T Consensus 268 iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999999999999999999999887 99999999754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-28 Score=237.04 Aligned_cols=256 Identities=13% Similarity=0.128 Sum_probs=190.4
Q ss_pred EEeCCCcEEE----EECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEeecCC------cc
Q 046773 159 CGFADGAVRL----FDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVIDDVA------NE 225 (453)
Q Consensus 159 SGS~D~TIrl----WD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~~~~g------~~ 225 (453)
||...++..+ ...++.++..||+||.. .|.+|+|+ ++.|+|||.|++|+|||+.... ..
T Consensus 9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~--------~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~ 80 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTEQMTLRGTLKGHNG--------WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR 80 (340)
T ss_dssp -----------------CEEEEEEEECCCSS--------CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE
T ss_pred cccCCCCccEEEEEccCCceEEEEEECCccC--------CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE
Confidence 4444454333 33455567789999875 68999986 4589999999999999997621 23
Q ss_pred eEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC
Q 046773 226 TRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH 305 (453)
Q Consensus 226 ~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~ 305 (453)
++++|...|. .++|+|||++ |++|+.|++|++|+...+.... ....+...+..+.+++.
T Consensus 81 ~l~~h~~~V~----~~~~s~dg~~---l~s~~~d~~i~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 139 (340)
T 4aow_A 81 ALRGHSHFVS----DVVISSDGQF---ALSGSWDGTLRLWDLTTGTTTR--------------RFVGHTKDVLSVAFSSD 139 (340)
T ss_dssp EECCCSSCEE----EEEECTTSSE---EEEEETTSEEEEEETTTTEEEE--------------EEECCSSCEEEEEECTT
T ss_pred EEeCCCCCEE----EEEECCCCCE---EEEEcccccceEEeecccceee--------------eecCCCCceeEEEEeec
Confidence 4556666554 4899999996 8899999999999998877321 12334455666777764
Q ss_pred c--eEEEEcCCcEEEEECCCCceEEE-EeeccCCeEEEEEEecC--CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE
Q 046773 306 E--SAVACTSSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNA--EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 306 ~--~~vas~d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g--~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~ 380 (453)
+ +++++.|+.+++||+........ ..+|...+...+|++++ ..+++++.|+ +++||+..+++++..+.
T Consensus 140 ~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~-------~i~i~d~~~~~~~~~~~ 212 (340)
T 4aow_A 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-------LVKVWNLANCKLKTNHI 212 (340)
T ss_dssp SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTS-------CEEEEETTTTEEEEEEC
T ss_pred CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCC-------EEEEEECCCCceeeEec
Confidence 4 45667789999999987544332 25566555556666554 3567888888 99999999999999999
Q ss_pred ecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 381 LRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 381 ~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
.|...|..+.++|++.++++++. ++|+|||+.++++++.+.++. . |. +++|++..|+++.|++|+|||+.
T Consensus 213 ~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~-v~~~~~~~~~~~~~~~~d~~i~iwd~~ 285 (340)
T 4aow_A 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-I-INALCFSPNRYWLCAATGPSIKIWDLE 285 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS-C-EEEEEECSSSSEEEEEETTEEEEEETT
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc-e-EEeeecCCCCceeeccCCCEEEEEECC
Confidence 99888999999999999998887 999999999999999998664 4 55 67788887776699999999974
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=298.95 Aligned_cols=265 Identities=15% Similarity=0.120 Sum_probs=221.7
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
+.|++|++ +++++|+.|++|++||+.+++++.++.+|.. .|.+++|+ ++.|++++.|++|++||+.+
T Consensus 964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~--------~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~- 1034 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK--------AVRHIQFTADGKTLISSSEDSVIQVWNWQT- 1034 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS--------CCCCEEECSSSSCEEEECSSSBEEEEETTT-
T ss_pred EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC--------ceEEEEECCCCCEEEEEcCCCEEEEEECCC-
Confidence 78888886 6999999999999999999999999998764 45667774 67899999999999999987
Q ss_pred C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 223 A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 223 g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
+ ......|...+. .++|+|+++ +++++.|++|++||+.+++.. ..+.+|...|.+++
T Consensus 1035 ~~~~~~~~~~~~v~----~~~~~~~~~----l~~~~~dg~v~vwd~~~~~~~--------------~~~~~~~~~v~~~~ 1092 (1249)
T 3sfz_A 1035 GDYVFLQAHQETVK----DFRLLQDSR----LLSWSFDGTVKVWNVITGRIE--------------RDFTCHQGTVLSCA 1092 (1249)
T ss_dssp TEEECCBCCSSCEE----EEEECSSSE----EEEEESSSEEEEEETTTTCCC--------------EEEECCSSCCCCEE
T ss_pred CceEEEecCCCcEE----EEEEcCCCc----EEEEECCCcEEEEECCCCcee--------------EEEcccCCcEEEEE
Confidence 4 222334444432 489999876 678999999999999998832 34567888999999
Q ss_pred EcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 302 VTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 302 ~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
|+|++ +++++.|++|++||+.+++++..+.+|...+...+|++++..+++++.|+ +|+||++.+++++..+
T Consensus 1093 ~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg-------~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1093 ISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG-------EIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp ECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS-------CCCEEESSSSCCCCCC
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC-------EEEEEECCCCceEEEe
Confidence 99876 46667789999999999887666677777666677888899999999999 9999999998876554
Q ss_pred ---------EecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEE
Q 046773 380 ---------SLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIH 447 (453)
Q Consensus 380 ---------~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~Ik 447 (453)
..|...+..+.|++++.++++++ ++|++||+.+|+++.++.+|.+. |+ +|+||+++|+++ .||.|+
T Consensus 1166 ~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~dg~v~ 1243 (1249)
T 3sfz_A 1166 APISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTNGTN-LKKIHVSPDFRTYVTVDNLGILY 1243 (1249)
T ss_dssp CCCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCCCSSCC-CCCCEECSSSCCEEEECTTCCEE
T ss_pred ccccccccccccCceEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeeeccCCc-ccEEEECCCCCEEEEecCCcEEE
Confidence 55677799999999999887665 89999999999999999999887 76 789999999999 999999
Q ss_pred EEec
Q 046773 448 LWDF 451 (453)
Q Consensus 448 lWDl 451 (453)
+|++
T Consensus 1244 vw~l 1247 (1249)
T 3sfz_A 1244 ILQV 1247 (1249)
T ss_dssp EECC
T ss_pred EEee
Confidence 9997
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=238.82 Aligned_cols=268 Identities=12% Similarity=0.108 Sum_probs=209.0
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
|.+++|++ ++|+++..++.+.+|+.........+.+|.. .|.+++|+ ++.|++++ |++|+|||+++.
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~ 82 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGE--------VVCAVTISNPTRHVYTGG-KGCVKVWDISHP 82 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSS--------CCCEEEECSSSSEEEEEC-BSEEEEEETTST
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCC--------ceEEEEEecCCcEEEEcC-CCeEEEEECCCC
Confidence 67888875 6888888777777777666555444445543 56777775 67899988 999999999763
Q ss_pred C-cce---EE--eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccc
Q 046773 223 A-NET---RT--AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 223 g-~~~---~~--~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
. ... +. .|...+. .++|+|++++ |++|+.|++|++||+++++... ...+.+|...
T Consensus 83 ~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~---l~~~~~d~~i~~~d~~~~~~~~------------~~~~~~~~~~ 143 (337)
T 1gxr_A 83 GNKSPVSQLDCLNRDNYIR----SCKLLPDGCT---LIVGGEASTLSIWDLAAPTPRI------------KAELTSSAPA 143 (337)
T ss_dssp TCCSCSEEEECSCTTSBEE----EEEECTTSSE---EEEEESSSEEEEEECCCC--EE------------EEEEECSSSC
T ss_pred CceeeeecccccCCCCcEE----EEEEcCCCCE---EEEEcCCCcEEEEECCCCCcce------------eeecccCCCc
Confidence 2 122 22 2333332 4899999986 7899999999999999887210 1345678888
Q ss_pred eeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 297 VGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 297 v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
+.+++|+|++ +++++.|++|++||+++++++....+|...+...+++++++.+++++.|+ .+++||..+++
T Consensus 144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~~~d~~~~~ 216 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN-------TVRSWDLREGR 216 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-------EEEEEETTTTE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC-------cEEEEECCCCc
Confidence 9999999876 45556789999999999877766666766666666778888999999999 99999999998
Q ss_pred eEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 375 EVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 375 ~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
.+..+. ++..+..+.+++++.++++++. +.|++||+.+++. ..+.+|.+. |. +|+||+++|+++ .|++|++||
T Consensus 217 ~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 217 QLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESC-VLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSC-EEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccc-eeEEEECCCCCEEEEecCCCcEEEEE
Confidence 887775 4556889999999999888887 9999999999876 467788888 77 678999999999 999999999
Q ss_pred cC
Q 046773 451 FG 452 (453)
Q Consensus 451 l~ 452 (453)
+.
T Consensus 294 ~~ 295 (337)
T 1gxr_A 294 TP 295 (337)
T ss_dssp TT
T ss_pred CC
Confidence 75
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=257.05 Aligned_cols=268 Identities=12% Similarity=0.090 Sum_probs=204.1
Q ss_pred EEEEecCCE---EEEEeCCCcEEEEECCCCe----EEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEE
Q 046773 148 RCLTLSDLY---LACGFADGAVRLFDLTTRL----HVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVA 217 (453)
Q Consensus 148 ~~lafs~~~---LaSGS~D~TIrlWD~~tg~----~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvW 217 (453)
.++++++++ +++|+.|++|+|||+.+.. .+.++.+|.. .|.+++|+ +..|++|+.|++|+||
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~--------~V~~~~~~p~~~~~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTA--------PVLDIAWCPHNDNVIASGSEDCTVMVW 109 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSS--------CEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCC--------CEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 468888864 4568999999999996652 3456667654 68889884 5789999999999999
Q ss_pred EeecCC--------cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 218 VIDDVA--------NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 218 d~~~~g--------~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
|+.+.+ +..+.+|...+. .++|+|+++. .|++|+.|++|+|||+++++.. .+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~h~~~v~----~~~~~p~~~~--~l~s~~~dg~i~iwd~~~~~~~--------------~~ 169 (402)
T 2aq5_A 110 EIPDGGLVLPLREPVITLEGHTKRVG----IVAWHPTAQN--VLLSAGCDNVILVWDVGTGAAV--------------LT 169 (402)
T ss_dssp ECCTTCCSSCBCSCSEEEECCSSCEE----EEEECSSBTT--EEEEEETTSCEEEEETTTTEEE--------------EE
T ss_pred EccCCCCccccCCceEEecCCCCeEE----EEEECcCCCC--EEEEEcCCCEEEEEECCCCCcc--------------EE
Confidence 998731 345566766553 4899999842 3889999999999999998843 23
Q ss_pred e--eeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE-eeccCC-eEEEEEEecCCEEEEE---eCCCcccc
Q 046773 290 L--TEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE-RGYGRG-LYVTSVDVNAEAYIVV---ENRELENQ 360 (453)
Q Consensus 290 l--~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~-~~v~~~~~~g~~l~s~---s~dg~~~~ 360 (453)
+ .+|.+.|.+++|+|++ +++++.|++|++||+++++++... .+|... ....++++++..++++ +.++
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~---- 245 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER---- 245 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE----
T ss_pred EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc----
Confidence 4 5788999999999876 456677899999999998877665 566543 4456678888888887 5677
Q ss_pred CcceEEEEEcCCCee-EEEEEe-cCCCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCCeE-EEEecccC--CceEE--EE
Q 046773 361 NRRLAIVRRVDTFEE-VCRFSL-RADRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGGEY-MYSFRERI--GEEVI--AF 431 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~-v~~l~~-~~~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG~~-l~tL~gh~--~~~V~--a~ 431 (453)
.++|||..+++. +..... +...+..+.+++++.++++++ . ++|+|||+.+++. +..+..|. +. |. +|
T Consensus 246 ---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~-v~~~~~ 321 (402)
T 2aq5_A 246 ---QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES-QRGMGY 321 (402)
T ss_dssp ---EEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSC-CSEEEE
T ss_pred ---eEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCc-ccceEE
Confidence 999999998654 334432 445688899999999987554 3 9999999999874 66666553 55 65 67
Q ss_pred ecCCCEEEEEeCCcEEEEecC
Q 046773 432 VGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 432 s~d~~~lasg~D~~IklWDl~ 452 (453)
+||+.+++++ |+.+++|++.
T Consensus 322 sp~~~~~~s~-~~~~~~~~l~ 341 (402)
T 2aq5_A 322 MPKRGLEVNK-CEIARFYKLH 341 (402)
T ss_dssp CCGGGSCGGG-TEEEEEEEEE
T ss_pred ecccccceec-ceeEEEEEcC
Confidence 8999887754 6699999974
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-28 Score=245.84 Aligned_cols=238 Identities=13% Similarity=0.116 Sum_probs=189.8
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA- 223 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g- 223 (453)
|+|++|++ ++||+|+.|++|+|||+.++++++++.+|.. .|.+++|+++.|++|+.|++|++||+...+
T Consensus 137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA--------RVGCLSWNRHVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS--------CEEEEEEETTEEEEEETTSEEEEEETTSSSC
T ss_pred EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC--------ceEEEEECCCEEEEEcCCCCEEEEecccCcc
Confidence 88999976 6999999999999999999999999998754 688899999999999999999999998523
Q ss_pred -cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 224 -NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 224 -~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
...+..|.+.+. .++|+|++++ |++|+.|++|+|||+++++.. .++.+|..+|.+++|
T Consensus 209 ~~~~~~~~~~~v~----~~~~~~~~~~---l~s~~~d~~v~iwd~~~~~~~--------------~~~~~~~~~v~~~~~ 267 (401)
T 4aez_A 209 QIGTLQGHSSEVC----GLAWRSDGLQ---LASGGNDNVVQIWDARSSIPK--------------FTKTNHNAAVKAVAW 267 (401)
T ss_dssp EEEEEECCSSCEE----EEEECTTSSE---EEEEETTSCEEEEETTCSSEE--------------EEECCCSSCCCEEEE
T ss_pred eeeEEcCCCCCee----EEEEcCCCCE---EEEEeCCCeEEEccCCCCCcc--------------EEecCCcceEEEEEE
Confidence 455666766554 4899999986 889999999999999998743 245678899999999
Q ss_pred cCCc--eEEEE---cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEe--CCCccccCcceEEEEEcCCCee
Q 046773 303 TSHE--SAVAC---TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVE--NRELENQNRRLAIVRRVDTFEE 375 (453)
Q Consensus 303 s~~~--~~vas---~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s--~dg~~~~~~~~i~Iw~~~tg~~ 375 (453)
+|++ +++++ .|++|++||+++++++.... +...+...++++++..+++++ .++ .++||++.+++.
T Consensus 268 ~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg-------~i~v~~~~~~~~ 339 (401)
T 4aez_A 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDN-------NLSIWSYSSSGL 339 (401)
T ss_dssp CTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTC-------EEEEEEEETTEE
T ss_pred CCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCC-------cEEEEecCCccc
Confidence 9854 44433 37899999999988776653 334555566778888888865 677 999999999765
Q ss_pred EEE--EEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEec
Q 046773 376 VCR--FSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 376 v~~--l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~ 421 (453)
... +..|...+..+.+++++.++++++. ++|++||+.+++++..+.
T Consensus 340 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 340 TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 544 5567777999999999999998887 999999999999887653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-29 Score=249.31 Aligned_cols=245 Identities=11% Similarity=0.077 Sum_probs=164.8
Q ss_pred EEEEEeCCCcEEEEECCCC---eEEEEecCCCCCccccc-----------------cceEEEEEEcCC------eEEEEe
Q 046773 156 YLACGFADGAVRLFDLTTR---LHVRTFRPQHSDRLGQF-----------------SRAVSGIIITDS------QLIFAT 209 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg---~~~~tl~gh~~~~~~~~-----------------s~~V~~i~f~g~------~LasgS 209 (453)
-|++++ ..+|+||++.++ ++++++.+|...++... ...|++|+|+++ .+++++
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 366776 559999999999 99999998765322110 124455554433 345544
Q ss_pred CCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEee--CCCeEEEeeCC-CCcEEecccccCCcceee
Q 046773 210 LDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL--AGRAFHIWDRQ-AEEVFVGGDLTDHNTVMG 286 (453)
Q Consensus 210 ~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS--~D~tIrvWD~~-tg~~~~g~~l~~~~~v~~ 286 (453)
. +++||++.+ |+. +.+++ .|++|++|++. +|+.+
T Consensus 135 ~--~~~v~~l~~-------------------------g~l---v~ss~~g~d~~V~~~~~s~dG~~~------------- 171 (356)
T 2w18_A 135 N--IKAVLGLTK-------------------------RRL---VSSSGTLSDQQVEVMTFAEDGGGK------------- 171 (356)
T ss_dssp E--EEEEEEETT-------------------------TEE---EEEESSSTTCEEEEEEECTTSCEE-------------
T ss_pred C--eEEEEecCC-------------------------CcE---EEecccCCCCcEEEEEECCCCcee-------------
Confidence 2 255555432 221 22322 48888888884 46643
Q ss_pred eeeeeeeccceeEEEEcC---Cc--eEEEEcCCcEEEEECCCCceEEEEeecc-C--CeEEEEEEecCCEEEE-------
Q 046773 287 WRMLTEFTEFVGRVRVTS---HE--SAVACTSSRVITFDLRNQGMVLGERGYG-R--GLYVTSVDVNAEAYIV------- 351 (453)
Q Consensus 287 w~~l~~h~~~v~~v~~s~---~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~-~--~~~v~~~~~~g~~l~s------- 351 (453)
..+.+|...+..++|++ ++ ++++|.|++|||||++||++++++.+|. + .+...+|+|+|..+++
T Consensus 172 -~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~ 250 (356)
T 2w18_A 172 -ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK 250 (356)
T ss_dssp -EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred -eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence 24567888888888886 22 5556788999999999999988875432 2 2233468888877644
Q ss_pred -----EeCCCccccCcceEEEEEcCCCeeEEEEEec-CCC--eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecc
Q 046773 352 -----VENRELENQNRRLAIVRRVDTFEEVCRFSLR-ADR--NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRE 422 (453)
Q Consensus 352 -----~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~-~~~--v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~g 422 (453)
++.|+ ++++|+..+++++..+... |++ ...+.++.++..+++++. +||||||+++|+|+++|++
T Consensus 251 w~laSGs~D~-------tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 251 ESESLRSPVF-------QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp -------CCE-------EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred ceeeccCCCc-------EEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence 44455 9999999999988766421 211 122333444566677765 9999999999999999999
Q ss_pred cCCceE--EEEecCCCEEEEE-eCCcEEEEecC
Q 046773 423 RIGEEV--IAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 423 h~~~~V--~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|.+..+ -+|+|||++|+|| .|++|||||+.
T Consensus 324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp C--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 987623 2799999999999 99999999963
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=266.88 Aligned_cols=237 Identities=14% Similarity=0.171 Sum_probs=191.4
Q ss_pred EEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEeecCC------cceEEeeecceecCceEEEEeCCC
Q 046773 177 VRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVIDDVA------NETRTAHFGSVMDDGVLIDFTGCS 247 (453)
Q Consensus 177 ~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~~~~g------~~~~~~~~~~v~~~~~~v~Fs~dg 247 (453)
...|++|.. .|.+|+|+ ++.|+|||.|++|+||++.... ...+.+|...|. .|+|+|+|
T Consensus 375 ~~~l~~H~~--------~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~----~v~~s~~g 442 (694)
T 3dm0_A 375 KGTMRAHTD--------MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE----DVVLSSDG 442 (694)
T ss_dssp EEEEECCSS--------CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEE----EEEECTTS
T ss_pred hhhcccCCc--------eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEE----EEEECCCC
Confidence 456888765 68889986 3579999999999999987521 234667776654 48999999
Q ss_pred ceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCc
Q 046773 248 RYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQG 325 (453)
Q Consensus 248 ~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~ 325 (453)
++ |+|||.|++|+|||+.+++.. +.+.+|...|.+|+|+|++ ++++|.|++|||||+...
T Consensus 443 ~~---l~sgs~Dg~v~vwd~~~~~~~--------------~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~- 504 (694)
T 3dm0_A 443 QF---ALSGSWDGELRLWDLAAGVST--------------RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE- 504 (694)
T ss_dssp SE---EEEEETTSEEEEEETTTTEEE--------------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-
T ss_pred CE---EEEEeCCCcEEEEECCCCcce--------------eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-
Confidence 96 889999999999999998743 3467899999999999876 566678899999998754
Q ss_pred eEEEE----eeccCCeEEEEEEecC--CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEE
Q 046773 326 MVLGE----RGYGRGLYVTSVDVNA--EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYAL 399 (453)
Q Consensus 326 ~~~~~----~g~~~~~~v~~~~~~g--~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~ll 399 (453)
+.... .+|...+...+|++++ ..+++++.|+ +|+|||+.+++++..+..|...+..+.+++++.+++
T Consensus 505 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-------~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~ 577 (694)
T 3dm0_A 505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK-------TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577 (694)
T ss_dssp EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTS-------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCC-------eEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence 43332 2344444444455554 4689999999 999999999999999999988899999999999999
Q ss_pred EEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 400 MCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 400 s~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
+++. ++|+|||+.++++++.+..+. . |. +|+|++.+|+++.|+.|+|||+.
T Consensus 578 sg~~Dg~i~iwd~~~~~~~~~~~~~~-~-v~~~~~sp~~~~l~~~~~~~i~iwd~~ 631 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKLYSLEANS-V-IHALCFSPNRYWLCAATEHGIKIWDLE 631 (694)
T ss_dssp EEETTSBCEEEETTTTEEEECCBCSS-C-EEEEEECSSSSEEEEEETTEEEEEETT
T ss_pred EEeCCCeEEEEECCCCceEEEecCCC-c-EEEEEEcCCCcEEEEEcCCCEEEEECC
Confidence 8887 999999999999999987553 4 55 78899999988888889999974
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=247.58 Aligned_cols=244 Identities=8% Similarity=0.072 Sum_probs=186.4
Q ss_pred EEEEEecCC------EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEE
Q 046773 147 CRCLTLSDL------YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVA 217 (453)
Q Consensus 147 v~~lafs~~------~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvW 217 (453)
|+|++|+++ +||+|+.|++|+|||+.++++++++.+|.. .|.+++|+ +..|++|+.|++|+||
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--------~i~~~~~~~~~~~~l~s~~~dg~i~iw 143 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN--------AINELKFHPRDPNLLLSVSKDHALRLW 143 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS--------CEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC--------cEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 788998765 899999999999999999999999998754 68888885 5689999999999999
Q ss_pred EeecCC--cceE---EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE---eccc-c-cC-------
Q 046773 218 VIDDVA--NETR---TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF---VGGD-L-TD------- 280 (453)
Q Consensus 218 d~~~~g--~~~~---~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~---~g~~-l-~~------- 280 (453)
|+.+ + ...+ ..|...+. .++|+|++++ |++|+.|++|+|||+++++.. .... . ++
T Consensus 144 d~~~-~~~~~~~~~~~~~~~~v~----~~~~~~~~~~---l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (366)
T 3k26_A 144 NIQT-DTLVAIFGGVEGHRDEVL----SADYDLLGEK---IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 215 (366)
T ss_dssp ETTT-TEEEEEECSTTSCSSCEE----EEEECTTSSE---EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCC
T ss_pred Eeec-CeEEEEecccccccCcee----EEEECCCCCE---EEEecCCCCEEEEECCCCccccccceeEEecCCCCccccc
Confidence 9987 4 2222 23544443 4899999986 889999999999999987621 1100 0 00
Q ss_pred --CcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCce--------------EEEEeeccCCeEEEEEEe
Q 046773 281 --HNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGM--------------VLGERGYGRGLYVTSVDV 344 (453)
Q Consensus 281 --~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~--------------~~~~~g~~~~~~v~~~~~ 344 (453)
......+..+.+|...|.+++|+++.+++++.|++|++||++++.+ +....+|...+...+|++
T Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 295 (366)
T 3k26_A 216 SQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM 295 (366)
T ss_dssp CEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE
T ss_pred ceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC
Confidence 0000112345568899999999976666667789999999998754 333455554454556788
Q ss_pred c--CCEEEEEeCCCccccCcceEEEEEcCCCe----eEEEEEec--CCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC
Q 046773 345 N--AEAYIVVENRELENQNRRLAIVRRVDTFE----EVCRFSLR--ADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG 413 (453)
Q Consensus 345 ~--g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~----~v~~l~~~--~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t 413 (453)
+ +..+++++.|+ .|+||++++++ .+..+..+ ...+..+.+++++.++++++. ++|+|||+.+
T Consensus 296 ~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 296 DFWQKMLALGNQVG-------KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CTTSSEEEEECTTS-------CEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCcEEEEEecCC-------cEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 8 89999999999 99999999875 34466666 567999999999999998887 9999999864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=242.21 Aligned_cols=238 Identities=10% Similarity=0.047 Sum_probs=184.9
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECC--CCeEEEEecCCCCCccccccceEEEEEEc----CCeEEEEe
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLT--TRLHVRTFRPQHSDRLGQFSRAVSGIIIT----DSQLIFAT 209 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~--tg~~~~tl~gh~~~~~~~~s~~V~~i~f~----g~~LasgS 209 (453)
||..+ |+|++|++ ++||+|+.|++|+|||+. ++++++++.+|.. .|.+++|+ ++.|++|+
T Consensus 9 ~h~~~----v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~~~l~s~~ 76 (379)
T 3jrp_A 9 AHNEL----IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG--------PVWRVDWAHPKFGTILASCS 76 (379)
T ss_dssp ECCCC----EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS--------CEEEEEECCGGGCSEEEEEE
T ss_pred CCccc----EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCC--------cEEEEEeCCCCCCCEEEEec
Confidence 79855 88999985 699999999999999998 7788899998754 68889886 78999999
Q ss_pred CCCCEEEEEeecCC----cceEEeeecceecCceEEEEeCC--CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 210 LDGDIHVAVIDDVA----NETRTAHFGSVMDDGVLIDFTGC--SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 210 ~D~tIkvWd~~~~g----~~~~~~~~~~v~~~~~~v~Fs~d--g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
.|++|+|||+.+ + ...+..|...+. .++|+|+ +++ |++++.|++|+|||++++....
T Consensus 77 ~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~---l~~~~~d~~i~v~d~~~~~~~~--------- 139 (379)
T 3jrp_A 77 YDGKVLIWKEEN-GRWSQIAVHAVHSASVN----SVQWAPHEYGPL---LLVASSDGKVSVVEFKENGTTS--------- 139 (379)
T ss_dssp TTSCEEEEEEET-TEEEEEEEECCCSSCEE----EEEECCGGGCSE---EEEEETTSEEEEEECCTTSCCC---------
T ss_pred cCCEEEEEEcCC-CceeEeeeecCCCcceE----EEEeCCCCCCCE---EEEecCCCcEEEEecCCCCcee---------
Confidence 999999999987 4 122333444433 4899999 875 8899999999999999875110
Q ss_pred eeeeeeeeeeccceeEEEEcC-------------Cc--eEEEEcCCcEEEEECCCCceE----EEEeeccCCeEEEEEEe
Q 046773 284 VMGWRMLTEFTEFVGRVRVTS-------------HE--SAVACTSSRVITFDLRNQGMV----LGERGYGRGLYVTSVDV 344 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s~-------------~~--~~vas~d~tIrlWDl~t~~~~----~~~~g~~~~~~v~~~~~ 344 (453)
-..+.+|...|.+++|+| ++ +++++.|++|++||++++... ..+.+|...+...+|+|
T Consensus 140 ---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 140 ---PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216 (379)
T ss_dssp ---EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred ---eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC
Confidence 023567889999999998 23 455567899999999887532 23456665565566777
Q ss_pred c---CCEEEEEeCCCccccCcceEEEEEcCCCee---EEEEEe--cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 345 N---AEAYIVVENRELENQNRRLAIVRRVDTFEE---VCRFSL--RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 345 ~---g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~---v~~l~~--~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
+ ++.+++++.|+ +++||++.+++. ...+.. +...+..+.+++++.++++++. ++|+|||+.++
T Consensus 217 ~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 217 TVLLRSYLASVSQDR-------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CCSSSEEEEEEETTS-------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCCeEEEEeCCC-------EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 7 77899999999 999999998742 222222 5566889999999999998877 99999999853
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=253.20 Aligned_cols=221 Identities=10% Similarity=0.032 Sum_probs=150.6
Q ss_pred CCeEEEEeCCCCEEEEEeecCCc------ceEEeeecceecCceEEEEeC--------CCceeeEEEEeeCCCeEEEeeC
Q 046773 202 DSQLIFATLDGDIHVAVIDDVAN------ETRTAHFGSVMDDGVLIDFTG--------CSRYWVGLYAGLAGRAFHIWDR 267 (453)
Q Consensus 202 g~~LasgS~D~tIkvWd~~~~g~------~~~~~~~~~v~~~~~~v~Fs~--------dg~~~~~LaSgS~D~tIrvWD~ 267 (453)
+..|++||.|++|||||+++... .++.+|.+.|. .|+|+| ||++ |||||.|+||||||+
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~----~v~~~p~~~~~~~~d~~~---las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVN----DIDIADVYSADNRLAEQV---IASVGDDCTLIIWRL 173 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEE----EEEEEEEECTTCSEEEEE---EEEEETTSEEEEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceE----EEEEccccccccCCCCCE---EEEEECCCeEEEEEC
Confidence 45799999999999999987211 23456777664 589998 7775 899999999999999
Q ss_pred CCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEE--------------
Q 046773 268 QAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGE-------------- 330 (453)
Q Consensus 268 ~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~-------------- 330 (453)
+++... ..+.+|.++|.+|+|+|++ +++++.|++|||||++++++....
T Consensus 174 ~~~~~~--------------~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~ 239 (393)
T 4gq1_A 174 TDEGPI--------------LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL 239 (393)
T ss_dssp ETTEEE--------------EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE
T ss_pred CCCcee--------------eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec
Confidence 887632 2345778899999999865 455577899999999998654332
Q ss_pred -----------eeccCCeEEEEEE-ecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCe------------
Q 046773 331 -----------RGYGRGLYVTSVD-VNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRN------------ 386 (453)
Q Consensus 331 -----------~g~~~~~~v~~~~-~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v------------ 386 (453)
.+|...+....+. +++..+++++.|+ +++|||+.+++....+..+...+
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~-------~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 240 NTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG-------AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp ESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS-------EEEEEEC-------------------CCSCSEEEE
T ss_pred ccccceeeeecccccccceeeeeecCCCCEEEEEeCCC-------CEEEEECccCCCCceEeeecCccccEEEccccccc
Confidence 1222222223333 6788999999999 99999998776554443332111
Q ss_pred ------eEEEEee-CCCeEEE-EeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEec
Q 046773 387 ------VNVMGCM-NQGYALM-CVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 387 ------~~~~~~~-~~~~lls-~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl 451 (453)
....+++ .++.+++ ++. ++|+|||+.+++++.++.+|... |+ +|+|||++||++.|+.|.||++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~-V~svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMP-IVDFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSC-EEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCc-EEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 1123333 3444444 444 99999999999999999999888 88 7889999999995556666664
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=267.67 Aligned_cols=232 Identities=9% Similarity=-0.032 Sum_probs=168.6
Q ss_pred cCCeEEEEeCCCCEEEEEeecCCc-----ceEEeeecceecCceEEEEeCC------CceeeEEEEeeCCCeEEEeeCCC
Q 046773 201 TDSQLIFATLDGDIHVAVIDDVAN-----ETRTAHFGSVMDDGVLIDFTGC------SRYWVGLYAGLAGRAFHIWDRQA 269 (453)
Q Consensus 201 ~g~~LasgS~D~tIkvWd~~~~g~-----~~~~~~~~~v~~~~~~v~Fs~d------g~~~~~LaSgS~D~tIrvWD~~t 269 (453)
+++.++|+|.|++|+|||+++... .++..|.+.|. .|+|+|+ ++ .|||||.|++|||||+.+
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~----~v~wsp~~~~~~~~~---~LAs~s~DgtvrlWd~~~ 244 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW----DLKWHEGCHAPHLVG---CLSFVSQEGTINFLEIID 244 (524)
T ss_dssp ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEE----EEEECSSCCCSSSSC---EEEEEETTSCEEEEECCC
T ss_pred hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE----EEEECCCCCCCCCCc---eEEEEecCCeEEEEEcCC
Confidence 456789999999999999987212 12344555543 4899997 34 389999999999999987
Q ss_pred CcEEec--ccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEEEcCCcEEEEECCCCceEE-EEeeccCCeEEE--EEE
Q 046773 270 EEVFVG--GDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVACTSSRVITFDLRNQGMVL-GERGYGRGLYVT--SVD 343 (453)
Q Consensus 270 g~~~~g--~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~-~~~g~~~~~~v~--~~~ 343 (453)
++.... ..+..+ ..++.+|..+|.+|+|+++. +++++.|++|+|||++++.++. .+.+|...+... +++
T Consensus 245 ~~~~~~~~~~~~~p-----~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s 319 (524)
T 2j04_B 245 NATDVHVFKMCEKP-----SLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYS 319 (524)
T ss_dssp CSSSSSEEECCCSC-----SEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECC
T ss_pred CccccccceeecCc-----eEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcC
Confidence 641100 000001 13577899999999998655 4566778999999999875443 346666544333 234
Q ss_pred ecC-CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC--CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEE
Q 046773 344 VNA-EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD--RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYS 419 (453)
Q Consensus 344 ~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~--~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~t 419 (453)
+++ ..++++|.|+ ++||||+.+++++.++..|.. .+.+++++|++..++++++ ++|||||+.+++|+++
T Consensus 320 ~~g~~~laS~S~D~-------tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~ 392 (524)
T 2j04_B 320 DFEDTVVSTVAVDG-------YFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP 392 (524)
T ss_dssp TTSCCEEEEEETTS-------EEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE
T ss_pred CCCCeEEEEeccCC-------eEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee
Confidence 455 6789999999 999999999887777766643 3778999999888887777 9999999999999999
Q ss_pred ecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 420 FRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 420 L~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|.+|.+. |+ +|+||++.|+|| .|++|+|||+.
T Consensus 393 l~gH~~~-V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 393 LVSRETT-ITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EEECSSC-EEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred eecCCCc-eEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 9999999 88 678999999999 99999999963
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-29 Score=255.19 Aligned_cols=254 Identities=10% Similarity=0.053 Sum_probs=180.8
Q ss_pred CCCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCC
Q 046773 137 SDVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLD 211 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D 211 (453)
.||..+ |+||+|++ ++|+|||.|++|||||++++.+ +++..++... ..+.+++| ++..|++|+.|
T Consensus 161 ~gH~~~----V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~l~~g~~d 230 (435)
T 4e54_B 161 IGAGGS----ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASSDTIN-----IWFCSLDVSASSRMVVTGDNV 230 (435)
T ss_dssp CSSSCC----CCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-EEEECCSSCS-----CCCCCEEEETTTTEEEEECSS
T ss_pred cCCCCC----EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-eEEeccCCCC-----ccEEEEEECCCCCEEEEEeCC
Confidence 489854 88999974 5999999999999999987765 4444333321 12344555 57799999999
Q ss_pred CCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 212 GDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 212 ~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
++|++||+++..+..+.+|...|. .|+|+|+++. .|++||.|++|+|||+++++... ......
T Consensus 231 g~i~~wd~~~~~~~~~~~h~~~v~----~v~~~p~~~~--~~~s~s~d~~v~iwd~~~~~~~~-----------~~~~~~ 293 (435)
T 4e54_B 231 GNVILLNMDGKELWNLRMHKKKVT----HVALNPCCDW--FLATASVDQTVKIWDLRQVRGKA-----------SFLYSL 293 (435)
T ss_dssp SBEEEEESSSCBCCCSBCCSSCEE----EEEECTTCSS--EEEEEETTSBCCEEETTTCCSSS-----------CCSBCC
T ss_pred CcEeeeccCcceeEEEecccceEE----eeeecCCCce--EEEEecCcceeeEEecccccccc-----------eEEEee
Confidence 999999997622566777776654 4899999885 47899999999999998866210 011245
Q ss_pred eeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCe------EEEEEEecCCEEEEEeCCCc-----c
Q 046773 292 EFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGL------YVTSVDVNAEAYIVVENREL-----E 358 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~------~v~~~~~~g~~l~s~s~dg~-----~ 358 (453)
+|..+|.+|+|+|++ +++++.|++|+|||++++.++..+.+|.+.. .-..+++++..+++++.+.. .
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 788999999999876 4556778999999999998876654443211 11235566666666543220 0
Q ss_pred ccCcceEEEEEcCCCeeEEEEE-ecCCCeeEE-EEeeCCCeEEEEeCCeEEEEECCCCeEE
Q 046773 359 NQNRRLAIVRRVDTFEEVCRFS-LRADRNVNV-MGCMNQGYALMCVEGVIRVWEVEGGEYM 417 (453)
Q Consensus 359 ~~~~~~i~Iw~~~tg~~v~~l~-~~~~~v~~~-~~~~~~~~lls~s~~tIrlWD~~tG~~l 417 (453)
...+++|+||+..+++.+..+. .|...|.++ +|+|++.+++++++++|+|||+++|+..
T Consensus 374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEARTR 434 (435)
T ss_dssp TTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC-----
T ss_pred ecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCeee
Confidence 1123489999999999888764 455567776 5889988888777799999999998764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=238.10 Aligned_cols=242 Identities=10% Similarity=0.030 Sum_probs=190.7
Q ss_pred CCCCCCCeEEEEEEec------C---CEEEEEeCCCcEEEEECCCCeE-----EEEecCCCCCccccccceEEEEEEc--
Q 046773 138 DVDNPDGLTCRCLTLS------D---LYLACGFADGAVRLFDLTTRLH-----VRTFRPQHSDRLGQFSRAVSGIIIT-- 201 (453)
Q Consensus 138 gh~~~d~v~v~~lafs------~---~~LaSGS~D~TIrlWD~~tg~~-----~~tl~gh~~~~~~~~s~~V~~i~f~-- 201 (453)
+|..+ |+|++|+ + ++|++|+.|++|+|||+.++++ ++++.+|..+. ....|.+++|+
T Consensus 60 ~h~~~----v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 60 VHKSG----LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM---KKHSFWALKWGAS 132 (397)
T ss_dssp CCTTC----EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG---GGSCEEEEEEECC
T ss_pred cCCCc----EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc---CCCcEEEEEEeec
Confidence 68744 7888886 5 6899999999999999999998 89998874110 01257777766
Q ss_pred ----CCe-EEEEeCCCCEEEEEeec------CC-cc-----eEEe-------eecceecCceEEEEeCCCceeeEEEEee
Q 046773 202 ----DSQ-LIFATLDGDIHVAVIDD------VA-NE-----TRTA-------HFGSVMDDGVLIDFTGCSRYWVGLYAGL 257 (453)
Q Consensus 202 ----g~~-LasgS~D~tIkvWd~~~------~g-~~-----~~~~-------~~~~v~~~~~~v~Fs~dg~~~~~LaSgS 257 (453)
+.. |++++.|++|++||+.. .. +. .+.+ |...+ ..++|+|++ . |++|+
T Consensus 133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~~-~---l~~~~ 204 (397)
T 1sq9_A 133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA----TSVDISERG-L---IATGF 204 (397)
T ss_dssp C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC----CEEEECTTS-E---EEEEC
T ss_pred cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCc----eEEEECCCc-e---EEEEe
Confidence 678 99999999999999986 32 33 4433 33333 258999999 5 78999
Q ss_pred CCCeEEEeeCCCCcEEecccccCCcceeeeeeeee---e---ccceeEEEEcCCc--eEEEEcC---CcEEEEECCCCce
Q 046773 258 AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE---F---TEFVGRVRVTSHE--SAVACTS---SRVITFDLRNQGM 326 (453)
Q Consensus 258 ~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~---h---~~~v~~v~~s~~~--~~vas~d---~tIrlWDl~t~~~ 326 (453)
.|++|+|||+++++.+ ..+.. | ...|.+++|+|++ +++++.| ++|++||++++++
T Consensus 205 ~dg~i~i~d~~~~~~~--------------~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 205 NNGTVQISELSTLRPL--------------YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp TTSEEEEEETTTTEEE--------------EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCCcEEEEECCCCcee--------------EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 9999999999998743 23445 7 8899999999876 4455667 8999999999988
Q ss_pred EEEEee-------------ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE------ec-----
Q 046773 327 VLGERG-------------YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS------LR----- 382 (453)
Q Consensus 327 ~~~~~g-------------~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~------~~----- 382 (453)
+..+.+ |...+...+|+++++.+++++.|+ .++||++.+++++..+. .+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 271 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-------KLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-------EEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-------eEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 777666 666666666778899999999999 99999999999999998 66
Q ss_pred ----------CCCeeEEEEeeCC----------CeEEEEeC-CeEEEEECCCCe
Q 046773 383 ----------ADRNVNVMGCMNQ----------GYALMCVE-GVIRVWEVEGGE 415 (453)
Q Consensus 383 ----------~~~v~~~~~~~~~----------~~lls~s~-~tIrlWD~~tG~ 415 (453)
...+..+.+++++ .++++++. ++|+|||+++|+
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 7779999999998 67787776 999999999875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-27 Score=224.84 Aligned_cols=242 Identities=11% Similarity=0.117 Sum_probs=191.0
Q ss_pred ECCCC-eEEEEecCCCCCccccccceEEEEEE-cCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeC
Q 046773 170 DLTTR-LHVRTFRPQHSDRLGQFSRAVSGIII-TDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTG 245 (453)
Q Consensus 170 D~~tg-~~~~tl~gh~~~~~~~~s~~V~~i~f-~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~ 245 (453)
|..++ +++++|.+|.. .|.+++| ++..|++|+.|++|+|||+.+ + ...+..|...+. .++|+|
T Consensus 3 d~~~~~~~~~~l~~h~~--------~v~~~~~~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~~~~~~~v~----~~~~~~ 69 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQ--------DVRDVVAVDDSKVASVSRDGTVRLWSKDD-QWLGTVVYTGQGFLN----SVCYDS 69 (313)
T ss_dssp --CCCCEEEEEECCCSS--------CEEEEEEEETTEEEEEETTSEEEEEEESS-SEEEEEEEECSSCEE----EEEEET
T ss_pred CccccHHHHHHhhCCCC--------CcEEEEecCCCEEEEEEcCCcEEEEECCC-CEEEEEeecCCccEE----EEEECC
Confidence 34444 78899998765 5777776 578999999999999999977 4 344555655443 589999
Q ss_pred CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCc
Q 046773 246 CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQG 325 (453)
Q Consensus 246 dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~ 325 (453)
++++ |++|+.|++|++||+...... .....+.+|...|.++.++++.+++++.|++|++|| +++
T Consensus 70 ~~~~---l~~~~~dg~i~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~ 133 (313)
T 3odt_A 70 EKEL---LLFGGKDTMINGVPLFATSGE-----------DPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGS 133 (313)
T ss_dssp TTTE---EEEEETTSCEEEEETTCCTTS-----------CC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTE
T ss_pred CCCE---EEEecCCCeEEEEEeeecCCC-----------CcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCc
Confidence 9996 889999999999999875410 001346788899999999887778888899999999 445
Q ss_pred eEEEEeeccCCeEEEEEEe-cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEe-cCCCeeEEEEeeCCCeEEEEeC
Q 046773 326 MVLGERGYGRGLYVTSVDV-NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSL-RADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 326 ~~~~~~g~~~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~-~~~~v~~~~~~~~~~~lls~s~ 403 (453)
.+.....|...+...++.+ +++.+++++.|+ .+++|| ..+.+..+.. +...+..+.+++++. +++++.
T Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-------~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 134 LVYNLQAHNASVWDAKVVSFSENKFLTASADK-------TIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp EEEEEECCSSCEEEEEEEETTTTEEEEEETTS-------CEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred EEEecccCCCceeEEEEccCCCCEEEEEECCC-------CEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence 5555566666665556666 889999999999 999999 5666777776 667788999998877 666666
Q ss_pred -CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 404 -GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 404 -~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++|++||+.+++++.++.+|.+. |. +|+|+++ |+++ .|++|+|||+.
T Consensus 204 dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~-l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEGHESF-VYCIKLLPNGD-IVSCGEDRTVRIWSKE 254 (313)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSC-EEEEEECTTSC-EEEEETTSEEEEECTT
T ss_pred CCeEEEEECCchhhhhhhhcCCce-EEEEEEecCCC-EEEEecCCEEEEEECC
Confidence 99999999999999999999998 87 6778985 6677 99999999974
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=259.15 Aligned_cols=274 Identities=13% Similarity=0.089 Sum_probs=213.6
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
+|..+ |.|++|++ ++||+|+.|++|+|||+.+++++.++.+|.. .|.+++|+ +..|++++.|++
T Consensus 53 ~~~~~----v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~dg~ 120 (814)
T 3mkq_A 53 VTETP----VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD--------YIRSIAVHPTKPYVLSGSDDLT 120 (814)
T ss_dssp CCSSC----EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS--------CEEEEEECSSSSEEEEEETTSE
T ss_pred cCCCc----EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC--------CEEEEEEeCCCCEEEEEcCCCE
Confidence 68754 88999986 6999999999999999999999999998754 57888875 668999999999
Q ss_pred EEEEEeecCC--cceEEeeecceecCceEEEEeC-CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeee
Q 046773 214 IHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTG-CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 214 IkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~-dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l 290 (453)
|++||+++.. ...+..|...+. .++|+| +++. |++++.|++|++||+.+++.. ..+
T Consensus 121 i~vw~~~~~~~~~~~~~~~~~~v~----~~~~~p~~~~~---l~~~~~dg~v~vwd~~~~~~~--------------~~~ 179 (814)
T 3mkq_A 121 VKLWNWENNWALEQTFEGHEHFVM----CVAFNPKDPST---FASGCLDRTVKVWSLGQSTPN--------------FTL 179 (814)
T ss_dssp EEEEEGGGTSEEEEEEECCSSCEE----EEEEETTEEEE---EEEEETTSEEEEEETTCSSCS--------------EEE
T ss_pred EEEEECCCCceEEEEEcCCCCcEE----EEEEEcCCCCE---EEEEeCCCeEEEEECCCCcce--------------eEE
Confidence 9999998732 344555655543 489999 7765 889999999999999887621 112
Q ss_pred e-eeccceeEEEEcC--Cc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 291 T-EFTEFVGRVRVTS--HE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 291 ~-~h~~~v~~v~~s~--~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
. .+...+.++.++| ++ +++++.|++|++||+++++++....+|...+...++++++..+++++.|+ ++
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~v 252 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG-------TL 252 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS-------CE
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-------eE
Confidence 2 3347788999987 55 34445678999999999887777777777776677888889999999999 99
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEeeCCCe--EEEEeCCeEEEEECCCCeEEEEe-----------------------
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCMNQGY--ALMCVEGVIRVWEVEGGEYMYSF----------------------- 420 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~--lls~s~~tIrlWD~~tG~~l~tL----------------------- 420 (453)
+||+..+++.+..+..+...+..+.++|++.. ++++.++.+.+|++..+.....+
T Consensus 253 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 332 (814)
T 3mkq_A 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAV 332 (814)
T ss_dssp EEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEE
T ss_pred EEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeee
Confidence 99999999999999888888999999998874 44445588999998653222111
Q ss_pred --------------------cccCCceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 421 --------------------RERIGEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 421 --------------------~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
..+... +. +|+||+++|+++.|+.+.||++.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~la~~~~~~~~i~~~~ 385 (814)
T 3mkq_A 333 IRGNEEVEQDEPLSLQTKELGSVDVF-PQSLAHSPNGRFVTVVGDGEYVIYTAL 385 (814)
T ss_dssp CCSCCCCCSSSCBCCCCEEECCCSSC-CSEEEECTTSSEEEEEETTEEEEEETT
T ss_pred cccccccccCccceeeeecCCCCccC-CceeEECCCCCEEEEecCCEEEEEECc
Confidence 112222 33 67899999988888999999864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-28 Score=237.48 Aligned_cols=244 Identities=13% Similarity=0.149 Sum_probs=186.6
Q ss_pred CeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC-C--cceEEeeecceecCceEEEEeCC--
Q 046773 174 RLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV-A--NETRTAHFGSVMDDGVLIDFTGC-- 246 (453)
Q Consensus 174 g~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~-g--~~~~~~~~~~v~~~~~~v~Fs~d-- 246 (453)
|+++.+|.+|.. .|.+++|+ ++.|++|+.|++|+|||++.. + ...+..|.+.|. .++|+|+
T Consensus 1 G~~~~~~~~h~~--------~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~----~~~~~~~~~ 68 (379)
T 3jrp_A 1 GSMVVIANAHNE--------LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW----RVDWAHPKF 68 (379)
T ss_dssp ----CCEEECCC--------CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE----EEEECCGGG
T ss_pred CCccEEecCCcc--------cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEE----EEEeCCCCC
Confidence 567788888764 68888876 678999999999999999841 2 344556666553 4899877
Q ss_pred CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC--c--eEEEEcCCcEEEEECC
Q 046773 247 SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH--E--SAVACTSSRVITFDLR 322 (453)
Q Consensus 247 g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~--~--~~vas~d~tIrlWDl~ 322 (453)
+++ |++|+.|++|+|||+++++... ...+.+|...|.+++|+|+ + +++++.|++|++||++
T Consensus 69 ~~~---l~s~~~dg~v~iwd~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 69 GTI---LASCSYDGKVLIWKEENGRWSQ------------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp CSE---EEEEETTSCEEEEEEETTEEEE------------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred CCE---EEEeccCCEEEEEEcCCCceeE------------eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 775 8899999999999999986211 1345678899999999987 4 5666778999999999
Q ss_pred CCceE--EEEeeccCCeEEEEEEe-------------cCCEEEEEeCCCccccCcceEEEEEcCCCe----eEEEEEecC
Q 046773 323 NQGMV--LGERGYGRGLYVTSVDV-------------NAEAYIVVENRELENQNRRLAIVRRVDTFE----EVCRFSLRA 383 (453)
Q Consensus 323 t~~~~--~~~~g~~~~~~v~~~~~-------------~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~----~v~~l~~~~ 383 (453)
++... ....+|...+...++++ +++.+++++.|+ .|+|||+.+++ .+..+..|.
T Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~h~ 206 (379)
T 3jrp_A 134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-------LVKIWKYNSDAQTYVLESTLEGHS 206 (379)
T ss_dssp TTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTS-------CEEEEEEETTTTEEEEEEEECCCS
T ss_pred CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC-------eEEEEEecCCCcceeeEEEEeccc
Confidence 87433 23355655555556666 578899999999 99999998764 445667778
Q ss_pred CCeeEEEEeeC---CCeEEEEeC-CeEEEEECCCCe-----EEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 384 DRNVNVMGCMN---QGYALMCVE-GVIRVWEVEGGE-----YMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 384 ~~v~~~~~~~~---~~~lls~s~-~tIrlWD~~tG~-----~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
..+..+.++|+ +.++++++. ++|+|||+.+++ .+.....|... |+ +|+||+++|+++ .|+.|+|||+
T Consensus 207 ~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-LWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC-EEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc-EEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 88999999999 777777776 999999999874 23333447777 77 678999999998 9999999997
Q ss_pred C
Q 046773 452 G 452 (453)
Q Consensus 452 ~ 452 (453)
.
T Consensus 286 ~ 286 (379)
T 3jrp_A 286 N 286 (379)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-28 Score=236.24 Aligned_cols=242 Identities=13% Similarity=0.115 Sum_probs=182.4
Q ss_pred CCCCCCCeEEEEEEecC-----CEEEEEeCCCcEEEEECCCCe-EEEEecCCCCCccccccceEEEEE--------EcCC
Q 046773 138 DVDNPDGLTCRCLTLSD-----LYLACGFADGAVRLFDLTTRL-HVRTFRPQHSDRLGQFSRAVSGII--------ITDS 203 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~-----~~LaSGS~D~TIrlWD~~tg~-~~~tl~gh~~~~~~~~s~~V~~i~--------f~g~ 203 (453)
+|..+ |.|++|++ ++|++|+.|++|+|||+.+++ +++++.+|.. .|.+++ .+++
T Consensus 63 ~~~~~----v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~s~~~~ 130 (357)
T 3i2n_A 63 EKAKP----IKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE--------IINAIDGIGGLGIGEGAP 130 (357)
T ss_dssp EESSC----EEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSS--------CEEEEEEESGGGCC-CCC
T ss_pred cccCc----EEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEeccc--------ceEEEeeccccccCCCcc
Confidence 57644 89999975 689999999999999999998 8999998764 466664 3467
Q ss_pred eEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEE----EeCCCceeeEEEEeeCCCeEEEeeCCCCcEEeccc
Q 046773 204 QLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLID----FTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGD 277 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~----Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~ 277 (453)
.|++|+.|++|++||+.+.. ...+..|.+........++ |+|++++ |++|+.|++|+|||+++++...
T Consensus 131 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~--- 204 (357)
T 3i2n_A 131 EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV---VCAGYDNGDIKLFDLRNMALRW--- 204 (357)
T ss_dssp EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE---EEEEETTSEEEEEETTTTEEEE---
T ss_pred EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCE---EEEEccCCeEEEEECccCceee---
Confidence 99999999999999998722 3344444432111112355 7899986 8899999999999999988421
Q ss_pred ccCCcceeeeeeeeeeccceeEEEEcC---Cc--eEEEEcCCcEEEEECCCCceEEEE-----eeccCCeEEEEEEecCC
Q 046773 278 LTDHNTVMGWRMLTEFTEFVGRVRVTS---HE--SAVACTSSRVITFDLRNQGMVLGE-----RGYGRGLYVTSVDVNAE 347 (453)
Q Consensus 278 l~~~~~v~~w~~l~~h~~~v~~v~~s~---~~--~~vas~d~tIrlWDl~t~~~~~~~-----~g~~~~~~v~~~~~~g~ 347 (453)
...|...|.+++|+| ++ +++++.|++|++||+++++++... .+|...+...++++++.
T Consensus 205 ------------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (357)
T 3i2n_A 205 ------------ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR 272 (357)
T ss_dssp ------------EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE
T ss_pred ------------ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC
Confidence 346778899999997 44 455667899999999886543222 25665555555666666
Q ss_pred -EEEEEeCCCccccCcceEEEEEcCCC-------------------eeEEEEEecCCCeeEEEEeeCCCeEE-EEeC-Ce
Q 046773 348 -AYIVVENRELENQNRRLAIVRRVDTF-------------------EEVCRFSLRADRNVNVMGCMNQGYAL-MCVE-GV 405 (453)
Q Consensus 348 -~l~s~s~dg~~~~~~~~i~Iw~~~tg-------------------~~v~~l~~~~~~v~~~~~~~~~~~ll-s~s~-~t 405 (453)
.+++++.|+ .++||++.++ +++..+..|...+..+.+++++.+++ +++. ++
T Consensus 273 ~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~ 345 (357)
T 3i2n_A 273 ELFLTAGGAG-------GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT 345 (357)
T ss_dssp EEEEEEETTS-------EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred cEEEEEeCCC-------cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc
Confidence 689999999 9999998754 45777888888899999999999988 6775 99
Q ss_pred EEEEECCCCeE
Q 046773 406 IRVWEVEGGEY 416 (453)
Q Consensus 406 IrlWD~~tG~~ 416 (453)
|+|||+.+.+.
T Consensus 346 i~iw~~~~~~~ 356 (357)
T 3i2n_A 346 VRVLIVTKLNK 356 (357)
T ss_dssp EEEEEECC---
T ss_pred EEEEECCCccc
Confidence 99999987654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=242.77 Aligned_cols=276 Identities=9% Similarity=-0.004 Sum_probs=206.2
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe---EEEEecCCCCC-----------------------------------
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL---HVRTFRPQHSD----------------------------------- 186 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~---~~~tl~gh~~~----------------------------------- 186 (453)
+.|++|++ ++|+++ .+++|++||+.+|+ .+.++..+...
T Consensus 7 ~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred EEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 67888875 666665 57899999999999 88787644210
Q ss_pred -----------ccccccceEEEEEEc--CCeE-EEEeCCCCEEEEEee--cCC--cceEEee--ecceecCceEEEEeCC
Q 046773 187 -----------RLGQFSRAVSGIIIT--DSQL-IFATLDGDIHVAVID--DVA--NETRTAH--FGSVMDDGVLIDFTGC 246 (453)
Q Consensus 187 -----------~~~~~s~~V~~i~f~--g~~L-asgS~D~tIkvWd~~--~~g--~~~~~~~--~~~v~~~~~~v~Fs~d 246 (453)
...++...|.+++|+ ++.| ++|+.|++|+|||+. + + +..+..| ...+ ..++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~v----~~~~~sp~ 160 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRFCFSKRP----NAISIAED 160 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEEECSSCE----EEEEECTT
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-CceeeeeecccCCCCc----eEEEEcCC
Confidence 000122258888886 5665 899999999999998 5 4 3444433 2332 25899999
Q ss_pred CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC---c--eEEEEcCCcEEEEEC
Q 046773 247 SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH---E--SAVACTSSRVITFDL 321 (453)
Q Consensus 247 g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~---~--~~vas~d~tIrlWDl 321 (453)
|++ |++|+.|++|++||+.+++... ....++.+|...|.+++|+|+ + +++++.|++|++||+
T Consensus 161 ~~~---l~~~~~~g~v~~~~~~~~~~~~----------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 161 DTT---VIIADKFGDVYSIDINSIPEEK----------FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp SSE---EEEEETTSEEEEEETTSCCCSS----------CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred CCE---EEEEeCCCcEEEEecCCccccc----------ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence 986 8899999999999998876310 001356789999999999998 5 455567899999999
Q ss_pred CCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec------------------
Q 046773 322 RNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR------------------ 382 (453)
Q Consensus 322 ~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~------------------ 382 (453)
+++.++... .+|...+...+|+ +++.+++++.|+ +|+|||+.+++++..+..+
T Consensus 228 ~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~-------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 228 PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD-------KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS-------EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred CCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC-------eEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence 998887663 5676666556667 899999999999 9999999999998888643
Q ss_pred -------CCCeeEEEEeeCCCeEEEEe-C-CeEEEEEC--CCC---eEEEEecccCCceEE--EEecCCCEEEEE-e---
Q 046773 383 -------ADRNVNVMGCMNQGYALMCV-E-GVIRVWEV--EGG---EYMYSFRERIGEEVI--AFVGDDRHVAAS-C--- 442 (453)
Q Consensus 383 -------~~~v~~~~~~~~~~~lls~s-~-~tIrlWD~--~tG---~~l~tL~gh~~~~V~--a~s~d~~~lasg-~--- 442 (453)
...+..+.+++++.++++++ . ++|+|||+ .++ +++.++.+| +. |+ +|+|++.+++.+ .
T Consensus 300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~-v~~~~~~~~~~~v~~~~~~~~ 377 (450)
T 2vdu_B 300 NENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YN-VISLSAHNDEFQVTLDNKESS 377 (450)
T ss_dssp -----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SC-EEEEEEETTEEEEEECCTTCC
T ss_pred ccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cc-eEEEEecCCcEEEEEecccCC
Confidence 23477888999999999887 4 99999999 777 888899888 66 76 566754334433 3
Q ss_pred ---CCcEEEEec
Q 046773 443 ---GTNIHLWDF 451 (453)
Q Consensus 443 ---D~~IklWDl 451 (453)
+..|+||.+
T Consensus 378 ~~~~~~i~v~~~ 389 (450)
T 2vdu_B 378 GVQKNFAKFIEY 389 (450)
T ss_dssp SSCCCSEEEEEE
T ss_pred CCCCcceEEEEE
Confidence 456899975
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=246.62 Aligned_cols=259 Identities=13% Similarity=0.137 Sum_probs=188.5
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCCccccccceEEEEEEc---CCeEEEEeCCCCEEEEEeec---CC-c-c
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTF-RPQHSDRLGQFSRAVSGIIIT---DSQLIFATLDGDIHVAVIDD---VA-N-E 225 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl-~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~D~tIkvWd~~~---~g-~-~ 225 (453)
..+++++ +|+ .+|+++.+| .+|.. .|.+++|+ +..|++||.|++|+|||+.+ .. . .
T Consensus 40 ~~~~~~~------~w~-~~g~~~~~~~~~h~~--------~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 40 EIVRSPN------MGN-LRGKLIATLMENEPN--------SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp CCCCCCC------GGG-CCCCEEEEECTTTTS--------CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred ccccccc------ccc-ccceEEeeeccCCCC--------ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 4555554 488 578899999 66543 68888875 46899999999999999865 11 1 1
Q ss_pred eEE-eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC---CCcEE---ecccccCCcceeeeeeee--e--ec
Q 046773 226 TRT-AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ---AEEVF---VGGDLTDHNTVMGWRMLT--E--FT 294 (453)
Q Consensus 226 ~~~-~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~---tg~~~---~g~~l~~~~~v~~w~~l~--~--h~ 294 (453)
.+. .|.+.|. .|+|+|+++. |++|+.|++|+|||++ +++.. .++. + +.+. . +.
T Consensus 105 ~~~~~h~~~v~----~~~~~~~~~~---l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------i---~~~~~~~~~~~ 168 (437)
T 3gre_A 105 SLTYDCSSTVT----QITMIPNFDA---FAVSSKDGQIIVLKVNHYQQESEVKFLNCEC------I---RKINLKNFGKN 168 (437)
T ss_dssp SEEEECSSCEE----EEEECTTSSE---EEEEETTSEEEEEEEEEEEETTEEEEEEEEE------E---EEEEGGGGSSC
T ss_pred eeeccCCCCEE----EEEEeCCCCE---EEEEeCCCEEEEEEeccccCCceeeccccce------e---EEEEccCcccc
Confidence 222 3555543 4899999986 8899999999999995 55522 1110 0 1111 1 33
Q ss_pred cceeEEE--EcCCc--eEEEEcCCcEEEEECCCCceEEEEee--ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 295 EFVGRVR--VTSHE--SAVACTSSRVITFDLRNQGMVLGERG--YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 295 ~~v~~v~--~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g--~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
..+.++. +++++ +++++.|++|++||+++++++..+.+ |...+...+|+++++.+++++.|+ +|+||
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-------~i~iw 241 (437)
T 3gre_A 169 EYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG-------IIDIW 241 (437)
T ss_dssp CCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS-------CEEEE
T ss_pred cCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC-------eEEEE
Confidence 4566666 34444 45567789999999999988877766 555555556677888999999999 99999
Q ss_pred EcCCCeeEEEEE-ecCCCeeEEEEee----CCCeEEEEeC-CeEEEEECCCCeEEEEecccCCc----------------
Q 046773 369 RVDTFEEVCRFS-LRADRNVNVMGCM----NQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGE---------------- 426 (453)
Q Consensus 369 ~~~tg~~v~~l~-~~~~~v~~~~~~~----~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~---------------- 426 (453)
|+.+++++.++. .+...+..+.+++ ++.++++++. ++|+|||+.+++++.++.+|...
T Consensus 242 d~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (437)
T 3gre_A 242 DIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL 321 (437)
T ss_dssp ETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred EcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccc
Confidence 999999998886 3444577886654 4556666666 99999999999999999877432
Q ss_pred ---------eEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 427 ---------EVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 427 ---------~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.|+ +|+ ++++|+++ .|++|+|||+.
T Consensus 322 ~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 322 NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence 133 455 66889999 99999999975
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=238.04 Aligned_cols=266 Identities=9% Similarity=0.048 Sum_probs=190.7
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeE-EEEeCCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQL-IFATLDGD 213 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~L-asgS~D~t 213 (453)
.+|.++ |+|++|++ ++||+|+.| .++|||+++++++.....+ . ..+..+.++++.+ ++++.|++
T Consensus 16 ~~h~~~----V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 16 NHVSNP----VTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR-H-------LSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp ---CCC----CCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS-C-------CCEEEECTTSSEEEEECSSTTE
T ss_pred ccCCCc----eEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC-C-------eEEEEEcCCCCEEEEEECCccE
Confidence 368744 78999986 689999866 5899999999887665421 1 1233345667766 56788999
Q ss_pred EEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC-cEEecccccCCcceeeeeee
Q 046773 214 IHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE-EVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 214 IkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg-~~~~g~~l~~~~~v~~w~~l 290 (453)
|+|||+.+ + +..+. +...+ ..+.|+++. ++. +.|++|+|||+.++ +.+ +++
T Consensus 83 v~iWd~~~-~~~~~~~~-~~~~v----~~v~~~~~~-----~~~-~~~~~i~i~d~~~~~~~~--------------~~~ 136 (355)
T 3vu4_A 83 VHIWDDVK-KQDVSRIK-VDAPV----KDLFLSREF-----IVV-SYGDVISVFKFGNPWKRI--------------TDD 136 (355)
T ss_dssp EEEEETTT-TEEEEEEE-CSSCE----EEEEECSSE-----EEE-EETTEEEEEESSTTCCBS--------------SCC
T ss_pred EEEEECCC-CcEEEEEE-CCCce----EEEEEcCCE-----EEE-EEcCEEEEEECCCCceee--------------EEe
Confidence 99999987 5 22222 22222 247888873 233 34889999999987 432 112
Q ss_pred eeeccceeEEEEcCCceEEE--EcCCcEEEEECCCCc----------------eEEEEeeccCCeEEEEEEecCCEEEEE
Q 046773 291 TEFTEFVGRVRVTSHESAVA--CTSSRVITFDLRNQG----------------MVLGERGYGRGLYVTSVDVNAEAYIVV 352 (453)
Q Consensus 291 ~~h~~~v~~v~~s~~~~~va--s~d~tIrlWDl~t~~----------------~~~~~~g~~~~~~v~~~~~~g~~l~s~ 352 (453)
.. +...+.+++..++++ +.+++|++||+++++ ++..+.+|...+...+|+|+++.++++
T Consensus 137 ~~---~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 137 IR---FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp EE---EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred cc---CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 22 344556777555554 346899999999865 244557787777777788889999999
Q ss_pred eCCCccccCcce-EEEEEcCCCeeEEEEE-e-cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeE--EEEecc----
Q 046773 353 ENRELENQNRRL-AIVRRVDTFEEVCRFS-L-RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEY--MYSFRE---- 422 (453)
Q Consensus 353 s~dg~~~~~~~~-i~Iw~~~tg~~v~~l~-~-~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~--l~tL~g---- 422 (453)
+.|+ + |+|||+.+++++.++. . |...+..+.++|++.++++++. ++|+|||++++.. ...|.+
T Consensus 214 s~d~-------~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~ 286 (355)
T 3vu4_A 214 SQDG-------TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM 286 (355)
T ss_dssp ETTC-------SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC
T ss_pred eCCC-------CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeec
Confidence 9999 9 9999999999999998 4 8888999999999999999887 9999999987531 111111
Q ss_pred ----------------cC---CceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 423 ----------------RI---GEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 423 ----------------h~---~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.. .. +.++++|++.|+++ .|+++++|++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 287 KYFQSEWSLCNFKLSVDKHVRGC-KIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp CCCCCSSCSEEEECCCCTTCCCC-EEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred cccccccceeEEEeccCCCCCce-EEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 11 13 55889999999999 99999999863
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-27 Score=234.31 Aligned_cols=285 Identities=12% Similarity=0.046 Sum_probs=184.0
Q ss_pred CCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-----CCeEEEEe
Q 046773 138 DVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-----DSQLIFAT 209 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-----g~~LasgS 209 (453)
+|..+ |++++|++ .+|++++.|++|+|||+.+++++..+.. .. .+.++++. +..+++++
T Consensus 97 ~~~~~----v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~ 163 (408)
T 4a11_B 97 VHRYS----VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-EE--------TVYSHHMSPVSTKHCLVAVGT 163 (408)
T ss_dssp CCSSC----EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-SS--------CEEEEEECSSCSSCCEEEEEE
T ss_pred cCCCc----EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-CC--------ceeeeEeecCCCCCcEEEEEc
Confidence 57744 89999976 4899999999999999999999988863 32 35556653 34899999
Q ss_pred CCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-E---EecccccCCcce
Q 046773 210 LDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-V---FVGGDLTDHNTV 284 (453)
Q Consensus 210 ~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~---~~g~~l~~~~~v 284 (453)
.|+.|++||+.+.. ...+..|.+.+. .++|+|++++ .|++|+.|++|+|||++++. . +..+. .....
T Consensus 164 ~~~~v~~~d~~~~~~~~~~~~~~~~v~----~~~~~~~~~~--ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~ 235 (408)
T 4a11_B 164 RGPKVQLCDLKSGSCSHILQGHRQEIL----AVSWSPRYDY--ILATASADSRVKLWDVRRASGCLITLDQHN--GKKSQ 235 (408)
T ss_dssp SSSSEEEEESSSSCCCEEECCCCSCEE----EEEECSSCTT--EEEEEETTSCEEEEETTCSSCCSEECCTTT--TCSCC
T ss_pred CCCeEEEEeCCCcceeeeecCCCCcEE----EEEECCCCCc--EEEEEcCCCcEEEEECCCCCcccccccccc--cccce
Confidence 99999999998722 455666666553 4899999985 37899999999999999876 1 11100 00000
Q ss_pred eeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeecc-----CCeEEEEEEecCCEEEEEeCCCc
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYG-----RGLYVTSVDVNAEAYIVVENREL 357 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~-----~~~~v~~~~~~g~~l~s~s~dg~ 357 (453)
.....+.+|...|.+++|+|++ +++++.|++|++||+++++......++. ...........+..++.++.++
T Consensus 236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 314 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS- 314 (408)
T ss_dssp CTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT-
T ss_pred eeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC-
Confidence 0011235788999999999876 4555678999999999986543321111 1111111122345667778888
Q ss_pred cccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEec-CC
Q 046773 358 ENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFVG-DD 435 (453)
Q Consensus 358 ~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~-d~ 435 (453)
.++||+..+++++..+..|...+..+.+++++.++++++. ++|+|||+.+++.+.....+... ..+.+ +.
T Consensus 315 ------~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~ 386 (408)
T 4a11_B 315 ------TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPAFE 386 (408)
T ss_dssp ------EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------
T ss_pred ------EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccccc
Confidence 9999999999999999989888999999999999998887 99999999999987765443322 23333 33
Q ss_pred CEEEEE-eCCcEEEEecC
Q 046773 436 RHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 436 ~~lasg-~D~~IklWDl~ 452 (453)
....+. .|+.|+||+..
T Consensus 387 ~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 387 DAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ------------------
T ss_pred eeecccCccCceeecCCc
Confidence 334455 89999999863
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-26 Score=228.41 Aligned_cols=257 Identities=10% Similarity=0.018 Sum_probs=194.9
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeE-EEEeCCCCEEEEEeecCC--cceEEe
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQL-IFATLDGDIHVAVIDDVA--NETRTA 229 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~L-asgS~D~tIkvWd~~~~g--~~~~~~ 229 (453)
.++++++.|++|++||+.++++++++.+|. .+.+++|+ ++.| ++++.|++|++||+.+ + ...+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~---------~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~ 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS---------NPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPA 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS---------SEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC---------CcceEEECCCCCEEEEECCCCCeEEEEECCC-CeEEEEEEC
Confidence 468999999999999999999999998653 35677775 5555 7788999999999987 5 222222
Q ss_pred eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--
Q 046773 230 HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-- 307 (453)
Q Consensus 230 ~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-- 307 (453)
+. .+ ..++|+|||+++ +++++.|++|++||+++++... .+..+ ..+.+++|+|++.
T Consensus 73 ~~-~v----~~~~~spdg~~l--~~~~~~~~~v~v~d~~~~~~~~--------------~~~~~-~~~~~~~~s~dg~~l 130 (391)
T 1l0q_A 73 GS-SP----QGVAVSPDGKQV--YVTNMASSTLSVIDTTSNTVAG--------------TVKTG-KSPLGLALSPDGKKL 130 (391)
T ss_dssp SS-SE----EEEEECTTSSEE--EEEETTTTEEEEEETTTTEEEE--------------EEECS-SSEEEEEECTTSSEE
T ss_pred CC-Cc----cceEECCCCCEE--EEEECCCCEEEEEECCCCeEEE--------------EEeCC-CCcceEEECCCCCEE
Confidence 21 22 248999999962 4577788999999999988431 12222 4578899998763
Q ss_pred EEEE-cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEE-EEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC
Q 046773 308 AVAC-TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAY-IVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR 385 (453)
Q Consensus 308 ~vas-~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l-~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~ 385 (453)
++++ .+++|++||+++++++.....+ ......+++++++.+ ++++.++ .+++||..+++++..+.. ...
T Consensus 131 ~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~-------~v~~~d~~~~~~~~~~~~-~~~ 201 (391)
T 1l0q_A 131 YVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSM-------SISVIDTVTNSVIDTVKV-EAA 201 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTT-------EEEEEETTTTEEEEEEEC-SSE
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCC-------EEEEEECCCCeEEEEEec-CCC
Confidence 2444 4689999999998776655433 234456677888877 5566677 999999999988877754 445
Q ss_pred eeEEEEeeCCCeEEEEe---C-CeEEEEECCCCeEEEEecccCCceEEEEecCCCEE-EEE-eCCcEEEEecC
Q 046773 386 NVNVMGCMNQGYALMCV---E-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHV-AAS-CGTNIHLWDFG 452 (453)
Q Consensus 386 v~~~~~~~~~~~lls~s---~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~l-asg-~D~~IklWDl~ 452 (453)
+..+.++++++++++++ . ++|++||+++++++..+..|....-.+|+||+++| +++ .|++|++||+.
T Consensus 202 ~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 78889999999888765 4 99999999999999999887654112788999987 677 89999999974
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-28 Score=238.92 Aligned_cols=231 Identities=8% Similarity=0.048 Sum_probs=178.9
Q ss_pred ecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeee
Q 046773 152 LSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHF 231 (453)
Q Consensus 152 fs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~ 231 (453)
.++.+||||+.|++|+|||+++++++.++.. . .|.++.+.+. ++++|.|++|++|+.+.
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~--~--------~v~~~~~~~~-~~s~s~D~~i~~w~~~~---------- 104 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITT--P--------NPRTGGEHPA-IISRGPCNRLLLLYPGN---------- 104 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEE--E--------CCCTTCCCCS-EEEECSTTEEEEEETTT----------
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEec--C--------CceeeeeCCc-eEEecCCCeEEEEEccC----------
Confidence 3567899999999999999999999988862 1 3444556666 88889999988887543
Q ss_pred cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC--Cc--e
Q 046773 232 GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS--HE--S 307 (453)
Q Consensus 232 ~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~--~~--~ 307 (453)
.+.+||+.+++++.. ...+|.++|.+++++| ++ +
T Consensus 105 -----------------------------~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~~l 142 (343)
T 3lrv_A 105 -----------------------------QITILDSKTNKVLRE-------------IEVDSANEIIYMYGHNEVNTEYF 142 (343)
T ss_dssp -----------------------------EEEEEETTTCCEEEE-------------EECCCSSCEEEEECCC---CCEE
T ss_pred -----------------------------ceEEeecCCcceeEE-------------eecCCCCCEEEEEcCCCCCCCEE
Confidence 356788888874431 1125668899999998 65 3
Q ss_pred EEEEcCCcEEEEECCCCceEEEEe-eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeE-EEEEe-cCC
Q 046773 308 AVACTSSRVITFDLRNQGMVLGER-GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEV-CRFSL-RAD 384 (453)
Q Consensus 308 ~vas~d~tIrlWDl~t~~~~~~~~-g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v-~~l~~-~~~ 384 (453)
++++.|++|++||+++++++.... .+...+...+|+|++..+++++.|+ +|+|||+.+++++ ..+.. |..
T Consensus 143 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg-------~i~iwd~~~~~~~~~~~~~~h~~ 215 (343)
T 3lrv_A 143 IWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG-------ILDVYNLSSPDQASSRFPVDEEA 215 (343)
T ss_dssp EEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS-------CEEEEESSCTTSCCEECCCCTTS
T ss_pred EEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC-------EEEEEECCCCCCCccEEeccCCC
Confidence 445678999999999988755442 2333455567788889999999999 9999999999887 77887 888
Q ss_pred CeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecc---cCCc---eEEEEecCCCEEEEE-e-CCcEEEEecC
Q 046773 385 RNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRE---RIGE---EVIAFVGDDRHVAAS-C-GTNIHLWDFG 452 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~g---h~~~---~V~a~s~d~~~lasg-~-D~~IklWDl~ 452 (453)
.|..+.|+|++.+++++++++|+|||+.++++++++.. |... ...+|+|++++|+++ . |+.|+||++.
T Consensus 216 ~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 216 KIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp CEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 89999999999999888888999999999988776654 3222 124788999999997 5 9999999873
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-27 Score=234.78 Aligned_cols=247 Identities=11% Similarity=0.045 Sum_probs=188.0
Q ss_pred EEECCCCeEEEEecCCCCCccccccceEEEEEEc--C-CeEEEEeCCCCEEEEEeecCC-cceEE--eeecceecCceEE
Q 046773 168 LFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--D-SQLIFATLDGDIHVAVIDDVA-NETRT--AHFGSVMDDGVLI 241 (453)
Q Consensus 168 lWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g-~~LasgS~D~tIkvWd~~~~g-~~~~~--~~~~~v~~~~~~v 241 (453)
+|++.+.+..+++.+|.. .|.+++|+ + +.|++|+.|++|+|||+.+.. ...+. +|.+.|. .+
T Consensus 57 ~~~~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~----~~ 124 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR--------RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT----GM 124 (383)
T ss_dssp HHHHTTCEEEEEECCCSS--------CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEE----EE
T ss_pred cccccccceEEeccCCCC--------CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCcee----EE
Confidence 456667778888988764 68889886 4 689999999999999998722 22222 3555543 48
Q ss_pred EEeC-CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEE
Q 046773 242 DFTG-CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVIT 318 (453)
Q Consensus 242 ~Fs~-dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrl 318 (453)
+|+| ++++ |++++.|++|+|||++++.... .....+|...|.+++|+|++ +++++.|++|++
T Consensus 125 ~~~~~~~~~---l~s~~~d~~i~iwd~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 189 (383)
T 3ei3_B 125 KFNQFNTNQ---LFVSSIRGATTLRDFSGSVIQV------------FAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLL 189 (383)
T ss_dssp EEETTEEEE---EEEEETTTEEEEEETTSCEEEE------------EECCCCSSCCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred EeCCCCCCE---EEEEeCCCEEEEEECCCCceEE------------EeccCCCCCCeEEEEECCCCCEEEEECCCCCEEE
Confidence 9999 5664 8899999999999998755211 01123455789999999876 455567899999
Q ss_pred EECCCCceEEEEeeccCCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEcCC----CeeEEEEEecCCCeeEEEEee
Q 046773 319 FDLRNQGMVLGERGYGRGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRVDT----FEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 319 WDl~t~~~~~~~~g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~t----g~~v~~l~~~~~~v~~~~~~~ 393 (453)
||++ ++++..+.+|...+...++++++. .+++++.|+ +|+|||+.+ ++++..+ .|...+..+.+++
T Consensus 190 ~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~ 260 (383)
T 3ei3_B 190 LGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA-------TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNP 260 (383)
T ss_dssp EETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS-------EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECT
T ss_pred EECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC-------EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcC
Confidence 9994 566666777776666666777777 899999999 999999998 5666666 5777899999999
Q ss_pred -CCCeEEEEeC-CeEEEEECCCCeEEEEecccCC-----------------ceE-EEEecCCCEEEEE-eCCcEEEEecC
Q 046773 394 -NQGYALMCVE-GVIRVWEVEGGEYMYSFRERIG-----------------EEV-IAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 394 -~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~-----------------~~V-~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++.++++++. ++|+|||+.+++++.++.+|.. ..+ .+++||+++ ++ .|++|+|||+.
T Consensus 261 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 261 TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDAN 338 (383)
T ss_dssp TTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred CCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence 9999888877 9999999999999888877641 101 245567666 56 89999999974
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=234.75 Aligned_cols=246 Identities=10% Similarity=0.086 Sum_probs=174.5
Q ss_pred CCCCCCCCeEEEEEEecCCEEEEE-----------eCCCcEEEEECCCCeE-EEEecCCCCCccccccceEEEEEEc--C
Q 046773 137 SDVDNPDGLTCRCLTLSDLYLACG-----------FADGAVRLFDLTTRLH-VRTFRPQHSDRLGQFSRAVSGIIIT--D 202 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~~~LaSG-----------S~D~TIrlWD~~tg~~-~~tl~gh~~~~~~~~s~~V~~i~f~--g 202 (453)
.+|. |. |+|++|+++.+++| +.|++||+|++.+++. +.................+++++|+ |
T Consensus 70 ~~~~--~~--v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 70 EDND--DS--PTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp CTTS--CC--CCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred cCCC--Cc--eEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 3777 44 78999999988876 4578899999877643 2211110000000111246667765 6
Q ss_pred CeEEE--EeCCCCEEEEEeecCCcceEE-eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEeccccc
Q 046773 203 SQLIF--ATLDGDIHVAVIDDVANETRT-AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLT 279 (453)
Q Consensus 203 ~~Las--gS~D~tIkvWd~~~~g~~~~~-~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~ 279 (453)
+.|++ ++.|++|||||+.+ +..... .|.+.|. .|+|+|||++ |++++. .++++|+..+++...
T Consensus 146 ~~la~as~~~d~~i~iwd~~~-~~~~~~~~~~~~V~----~v~fspdg~~---l~s~s~-~~~~~~~~~~~~~~~----- 211 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSD-LTEKFEIETRGEVK----DLHFSTDGKV---VAYITG-SSLEVISTVTGSCIA----- 211 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTT-TEEEEEEECSSCCC----EEEECTTSSE---EEEECS-SCEEEEETTTCCEEE-----
T ss_pred CEEEEEECCCCCEEEEeECCC-CcEEEEeCCCCceE----EEEEccCCce---EEeccc-eeEEEEEeccCccee-----
Confidence 67664 45799999999987 522221 2444443 5899999996 778875 557777777776321
Q ss_pred CCcceeeeeeeeeeccceeEEEEcCCce--EEEEcCC----cEEEEECCCCceEE----EEeeccCCeEEEEEEecCCEE
Q 046773 280 DHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTSS----RVITFDLRNQGMVL----GERGYGRGLYVTSVDVNAEAY 349 (453)
Q Consensus 280 ~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~----tIrlWDl~t~~~~~----~~~g~~~~~~v~~~~~~g~~l 349 (453)
..++.+|...|.+|+|+|++. ++++.|+ ++++||+....... .+.+|...+...+|+|+|+.+
T Consensus 212 -------~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 212 -------RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELA 284 (365)
T ss_dssp -------EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred -------eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCce
Confidence 023456788899999998874 4445554 58899998764321 234565556666788889999
Q ss_pred EEEeCCCccccCcceEEEEEcCCCeeEEEE-EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 350 IVVENRELENQNRRLAIVRRVDTFEEVCRF-SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
++++.|+ +|+|||+.+++++.++ .+|...|.+++|+||+++++++|. +||||||+.+.
T Consensus 285 asgs~D~-------~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDN-------SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTS-------CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCC-------EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999 9999999999999886 678889999999999999999987 99999999653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-28 Score=256.05 Aligned_cols=249 Identities=7% Similarity=-0.002 Sum_probs=184.8
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCc
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVAN 224 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~ 224 (453)
|.+++||+ .+|||+|.|+||| |.++++++ .||.. .|..++|+++. .|+++++|+.+. .
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~--------~v~~V~FsPdg-----~~~~~~~~~~~~--~ 77 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSK--------NLFHVKEFPLE-----FENKLDFELAQQ--N 77 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGG--------GTEEEEEECCC-----CCCTTTTSCCCS--S
T ss_pred EEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCc--------cEEEEEECCCC-----CcceEEEEeCCC--c
Confidence 67899986 6999999999999 88777765 67655 56778776544 566666666543 1
Q ss_pred ceEE-eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecc-----cee
Q 046773 225 ETRT-AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTE-----FVG 298 (453)
Q Consensus 225 ~~~~-~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~-----~v~ 298 (453)
..+. .|...| ..|+|||||++ ||++|.|++|+|||.++ ++ .++. |.. .|.
T Consensus 78 ~~~~~~~~~~V----~~vawSPdG~~---LAs~s~dg~V~iwd~~~--~l--------------~~l~-~~~~~~~~sv~ 133 (588)
T 2j04_A 78 GLLNSQPVCYP----RVCKPSPIDDW---MAVLSNNGNVSVFKDNK--ML--------------TNLD-SKGNLSSRTYH 133 (588)
T ss_dssp CSSTTSCSCCE----EEEEECSSSSC---EEEEETTSCEEEEETTE--EE--------------EECC-CSSCSTTTCEE
T ss_pred eEeecCCCCcE----EEEEECCCCCE---EEEEeCCCcEEEEeCCc--ee--------------eecc-CCCccccccEE
Confidence 2222 233333 25999999997 89999999999999644 22 2344 444 489
Q ss_pred EEEEcCCce--EEEEcCCcEEEEECCCCce-------EEEE----eeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 299 RVRVTSHES--AVACTSSRVITFDLRNQGM-------VLGE----RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 299 ~v~~s~~~~--~vas~d~tIrlWDl~t~~~-------~~~~----~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
+|+|+|++. ++++.|++|+|||+.++.. +.+. .+|. ..|.+++++++++++++.|+ ++
T Consensus 134 svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~--~~V~sVawSPdgLaass~D~-------tV 204 (588)
T 2j04_A 134 CFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK--DWVTHIVWYEDVLVAALSNN-------SV 204 (588)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC--CCEEEEEEETTEEEEEETTC-------CE
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc--ccEEEEEEcCCcEEEEeCCC-------eE
Confidence 999999874 5567789999999998752 3443 3343 45555555555588888888 99
Q ss_pred EEEEcCCCee---EEEEE-ecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCceEE--EE--ecCCCE
Q 046773 366 IVRRVDTFEE---VCRFS-LRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVI--AF--VGDDRH 437 (453)
Q Consensus 366 ~Iw~~~tg~~---v~~l~-~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~--a~--s~d~~~ 437 (453)
++|++++++. .+++. +|...|..++|+ +..++++++++|+|||+.+++......||.+. |+ +| +||+..
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~-V~~va~~~s~d~~~ 281 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLEN-FHIIPLNHEKESTI 281 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSC-CCEEEETTCSSCEE
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCce-EEEEEeeeCCCCCE
Confidence 9999998763 35563 666779999998 57777776799999999998885555589888 76 88 899999
Q ss_pred EEEE-eCCcEEEEecC
Q 046773 438 VAAS-CGTNIHLWDFG 452 (453)
Q Consensus 438 lasg-~D~~IklWDl~ 452 (453)
|+++ .||+ |||.+.
T Consensus 282 La~a~edG~-klw~~d 296 (588)
T 2j04_A 282 LLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEECSSCEE-EEEESS
T ss_pred EEEEcCCCC-EEEeec
Confidence 9999 8999 999864
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=233.35 Aligned_cols=240 Identities=14% Similarity=0.148 Sum_probs=169.8
Q ss_pred EEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeC
Q 046773 168 LFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTG 245 (453)
Q Consensus 168 lWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~ 245 (453)
||++.+.+.+.++.+|.. .|.+++|+ |+.|++|+.| .++|||+++ +......+... ...++|.+
T Consensus 3 i~s~~~~~~~~~~~~h~~--------~V~~v~fs~dg~~la~g~~~-~~~iw~~~~-~~~~~~~~~~~----~~~~~~~~ 68 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSN--------PVTDYEFNQDQSCLILSTLK-SFEIYNVHP-VAHIMSQEMRH----LSKVRMLH 68 (355)
T ss_dssp ----------------CC--------CCCEEEECTTSSEEEEECSS-EEEEEEETT-EEEEEEEECSC----CCEEEECT
T ss_pred cccccccCCccccccCCC--------ceEEEEECCCCCEEEEEcCC-EEEEEecCC-cceeeeeecCC----eEEEEEcC
Confidence 688889988888887654 57778885 6788888766 579999876 32222222221 12478888
Q ss_pred CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCC-
Q 046773 246 CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQ- 324 (453)
Q Consensus 246 dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~- 324 (453)
++.. .+++|+.|++|+|||+++++... .+ .|...|.+++++++.++++ .+++|++||+.++
T Consensus 69 ~~~~--~~~~~~~d~~v~iWd~~~~~~~~--------------~~-~~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~ 130 (355)
T 3vu4_A 69 RTNY--VAFVTGVKEVVHIWDDVKKQDVS--------------RI-KVDAPVKDLFLSREFIVVS-YGDVISVFKFGNPW 130 (355)
T ss_dssp TSSE--EEEECSSTTEEEEEETTTTEEEE--------------EE-ECSSCEEEEEECSSEEEEE-ETTEEEEEESSTTC
T ss_pred CCCE--EEEEECCccEEEEEECCCCcEEE--------------EE-ECCCceEEEEEcCCEEEEE-EcCEEEEEECCCCc
Confidence 8775 23578889999999999998431 22 2557899999999876654 5789999999987
Q ss_pred ceEEEEeeccCCeEEEEEEecCCEEEEE--eCCCccccCcceEEEEEcCCCe----------------eEEEEEecCCCe
Q 046773 325 GMVLGERGYGRGLYVTSVDVNAEAYIVV--ENRELENQNRRLAIVRRVDTFE----------------EVCRFSLRADRN 386 (453)
Q Consensus 325 ~~~~~~~g~~~~~~v~~~~~~g~~l~s~--s~dg~~~~~~~~i~Iw~~~tg~----------------~v~~l~~~~~~v 386 (453)
+++.+... ...+.++++ ..++.+ +.++ +|+|||+.+++ ++..+..|...|
T Consensus 131 ~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g-------~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v 198 (355)
T 3vu4_A 131 KRITDDIR---FGGVCEFSN--GLLVYSNEFNLG-------QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPI 198 (355)
T ss_dssp CBSSCCEE---EEEEEEEET--TEEEEEESSCTT-------CEEEEECCC------------------CCEEECCCSSCE
T ss_pred eeeEEecc---CCceEEEEc--cEEEEeCCCcCc-------EEEEEECCCCCccccccccccccccCcccEEEEccCCce
Confidence 55444322 233455655 677664 5667 99999999865 267788898889
Q ss_pred eEEEEeeCCCeEEEEeC-Ce-EEEEECCCCeEEEEec-c-cCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 387 VNVMGCMNQGYALMCVE-GV-IRVWEVEGGEYMYSFR-E-RIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 387 ~~~~~~~~~~~lls~s~-~t-IrlWD~~tG~~l~tL~-g-h~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
..+.++|++.++++++. ++ |||||+.+++++++|. | |.+. |+ +|+||+++|+++ .|++|+|||+.
T Consensus 199 ~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~-v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 199 KMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD-VVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp EEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSC-EEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCc-EEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 99999999999999887 98 9999999999999998 6 8888 87 678999999999 99999999984
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=239.70 Aligned_cols=246 Identities=11% Similarity=0.122 Sum_probs=181.4
Q ss_pred ceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC------------cceEEeee------------cceecCceEEEEeCC
Q 046773 193 RAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA------------NETRTAHF------------GSVMDDGVLIDFTGC 246 (453)
Q Consensus 193 ~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g------------~~~~~~~~------------~~v~~~~~~v~Fs~d 246 (453)
..|.+++|+ ++.||+|+.|++|+|||+.+.. ...+.+|. ..|. .|+|+|+
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~----~l~~~~~ 104 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN----KIRWLPQ 104 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC----EEEECCC
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE----EEEEcCC
Confidence 478889886 6789999999999999998621 23445564 3332 4899999
Q ss_pred C--ceeeEEEEeeCCCeEEEeeCCCCcEE-ecccccCCc-------ce-----------------eee-eeeeeecccee
Q 046773 247 S--RYWVGLYAGLAGRAFHIWDRQAEEVF-VGGDLTDHN-------TV-----------------MGW-RMLTEFTEFVG 298 (453)
Q Consensus 247 g--~~~~~LaSgS~D~tIrvWD~~tg~~~-~g~~l~~~~-------~v-----------------~~w-~~l~~h~~~v~ 298 (453)
+ .. |++++.|++|+|||+.+++.. ....+.++. .+ ... ..+.+|...|.
T Consensus 105 ~~~~~---l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 105 KNAAQ---FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CSSSE---EEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred CCcce---EEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 8 44 789999999999999875521 100000000 00 000 11368999999
Q ss_pred EEEEcCCce-EEEEcCCcEEEEECCCCceEEE--------EeeccCCeEEEEEEecC-CEEEEEeCCCccccCcceEEEE
Q 046773 299 RVRVTSHES-AVACTSSRVITFDLRNQGMVLG--------ERGYGRGLYVTSVDVNA-EAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 299 ~v~~s~~~~-~vas~d~tIrlWDl~t~~~~~~--------~~g~~~~~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
+++|+|++. ++++.|++|+|||+++.+.... ..+|...+...+|+|++ +.+++++.|+ +|+||
T Consensus 182 ~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-------~i~iw 254 (447)
T 3dw8_B 182 SISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG-------TIRLC 254 (447)
T ss_dssp EEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS-------CEEEE
T ss_pred EEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC-------eEEEE
Confidence 999998764 3334678999999995433222 23555555556677777 8899999999 99999
Q ss_pred EcCCCee----EEEEEecCC------------CeeEEEEeeCCCeEEEEeCCeEEEEECCC-CeEEEEecccCCceE---
Q 046773 369 RVDTFEE----VCRFSLRAD------------RNVNVMGCMNQGYALMCVEGVIRVWEVEG-GEYMYSFRERIGEEV--- 428 (453)
Q Consensus 369 ~~~tg~~----v~~l~~~~~------------~v~~~~~~~~~~~lls~s~~tIrlWD~~t-G~~l~tL~gh~~~~V--- 428 (453)
|+.+++. +..+..+.+ .+..+.+++++.++++++.++|+|||+.+ ++++.++.+|....-
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccccccc
Confidence 9999876 677877765 79999999999998877779999999998 999999999864200
Q ss_pred -------------EEEecCCCEEEEE-eCCcEEEEecC
Q 046773 429 -------------IAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 429 -------------~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+|+||+++|+++ .|++|+|||+.
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 3789999999999 99999999974
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=240.21 Aligned_cols=231 Identities=10% Similarity=0.002 Sum_probs=173.9
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~ 268 (453)
.|.+++|+ ++.|++|+.|++|+|||+.+.. ..++.+|.+.+. .++|+|+|++ |++|+.|++|+|||++
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~----~~~~s~~~~~---l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVT----CVDWAPKSNR---IVTCSQDRNAYVYEKR 85 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEE----EEEECTTTCC---EEEEETTSSEEEC---
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEE----EEEEeCCCCE---EEEEeCCCeEEEEEcC
Confidence 45566665 7789999999999999998721 355566766554 4899999986 8899999999999999
Q ss_pred CCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCc---eEEEEee-ccCCeEEEEE
Q 046773 269 AEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQG---MVLGERG-YGRGLYVTSV 342 (453)
Q Consensus 269 tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~---~~~~~~g-~~~~~~v~~~ 342 (453)
+++.+. ....+.+|...|.+++|+|++ +++++.|++|++||+++++ +...+.+ |...+...++
T Consensus 86 ~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~ 154 (377)
T 3dwl_C 86 PDGTWK-----------QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW 154 (377)
T ss_dssp ---CCC-----------CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred CCCcee-----------eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence 876110 012456788999999999865 5667788999999999876 3444544 6666666667
Q ss_pred EecCCEEEEEeCCCccccCcceEEEEEcC------------------CCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-
Q 046773 343 DVNAEAYIVVENRELENQNRRLAIVRRVD------------------TFEEVCRFSLRADRNVNVMGCMNQGYALMCVE- 403 (453)
Q Consensus 343 ~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~------------------tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~- 403 (453)
+++++.+++++.|+ +++||++. +++++..+ .|...+..+.++|++.++++++.
T Consensus 155 ~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 155 HPNNVLLAAGCADR-------KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp CTTSSEEEEEESSS-------CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT
T ss_pred cCCCCEEEEEeCCC-------EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC
Confidence 77888999999999 99999985 34566666 67777999999999999998887
Q ss_pred CeEEEEECCCCeE----EEEecccCCceEE--EEecCCCEEEEEeCCcEEEEec
Q 046773 404 GVIRVWEVEGGEY----MYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 404 ~tIrlWD~~tG~~----l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl 451 (453)
++|+|||+.++++ +.++.+|.+. |. +|+||+++|+++.|+.+.+|+.
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 227 SSVTIAYPSAPEQPPRALITVKLSQLP-LRSLLWANESAIVAAGYNYSPILLQG 279 (377)
T ss_dssp TEEC-CEECSTTSCEEECCCEECSSSC-EEEEEEEETTEEEEEESSSSEEEECC
T ss_pred CcEEEEECCCCCCcceeeEeecCCCCc-eEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence 9999999999988 8899999988 77 6789999999994445557765
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=227.78 Aligned_cols=232 Identities=11% Similarity=0.031 Sum_probs=186.3
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecC---CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDV---ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~---g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~ 268 (453)
.|.+++|+ ++.|++|+.|++|+|||+++. -...+..|...+. .++|+|++++ |++|+.|++|+|||++
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~----~~~~~~~~~~---l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT----GVDWAPDSNR---IVTCGTDRNAYVWTLK 82 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE----EEEEETTTTE---EEEEETTSCEEEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc----EEEEeCCCCE---EEEEcCCCeEEEEECC
Confidence 56778775 678999999999999999872 1344455655543 4899999986 8899999999999999
Q ss_pred CCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCce---EEEE-eeccCCeEEEEE
Q 046773 269 AEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGM---VLGE-RGYGRGLYVTSV 342 (453)
Q Consensus 269 tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~---~~~~-~g~~~~~~v~~~ 342 (453)
+++...- ..+..|...|.+++|+|++ +++++.|++|++||++++.. .... .+|...+...++
T Consensus 83 ~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 83 GRTWKPT------------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp TTEEEEE------------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred CCeeeee------------EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 8873210 1245678899999999876 45556789999999998762 2222 445555555566
Q ss_pred EecCCEEEEEeCCCccccCcceEEEEEc------------------CCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-
Q 046773 343 DVNAEAYIVVENRELENQNRRLAIVRRV------------------DTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE- 403 (453)
Q Consensus 343 ~~~g~~l~s~s~dg~~~~~~~~i~Iw~~------------------~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~- 403 (453)
+++++.+++++.|+ .++|||+ .+++++..+..|...+..+.+++++.++++++.
T Consensus 151 ~~~~~~l~~~~~dg-------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 223 (372)
T 1k8k_C 151 HPNSVLLAAGSCDF-------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223 (372)
T ss_dssp CTTSSEEEEEETTS-------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred cCCCCEEEEEcCCC-------CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence 77888999999999 9999994 467888888878888999999999999988887
Q ss_pred CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 404 GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 404 ~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
++|++||+.+++++.++.+|... |. +|+||+++|+++.|+.|+|||+.
T Consensus 224 ~~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~d~~i~i~~~~ 273 (372)
T 1k8k_C 224 STVCLADADKKMAVATLASETLP-LLAVTFITESSLVAAGHDCFPVLFTYD 273 (372)
T ss_dssp TEEEEEEGGGTTEEEEEECSSCC-EEEEEEEETTEEEEEETTSSCEEEEEE
T ss_pred CEEEEEECCCCceeEEEccCCCC-eEEEEEecCCCEEEEEeCCeEEEEEcc
Confidence 99999999999999999999888 77 67899999988899999999974
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-27 Score=238.24 Aligned_cols=238 Identities=13% Similarity=0.051 Sum_probs=158.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEE-----EEecCCCCCccccccceEEEEEE----------cCCeEEEEeCCCCEEEEE
Q 046773 154 DLYLACGFADGAVRLFDLTTRLHV-----RTFRPQHSDRLGQFSRAVSGIII----------TDSQLIFATLDGDIHVAV 218 (453)
Q Consensus 154 ~~~LaSGS~D~TIrlWD~~tg~~~-----~tl~gh~~~~~~~~s~~V~~i~f----------~g~~LasgS~D~tIkvWd 218 (453)
+.+|||||.|+||||||++++++. .+|.||.. .|.+++| +++.|||||.|+||||||
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~--------~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHN--------FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSS--------CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCC--------ceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 368999999999999999999764 34677654 6888888 467899999999999999
Q ss_pred eecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE---ecccccCCccee--------e
Q 046773 219 IDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF---VGGDLTDHNTVM--------G 286 (453)
Q Consensus 219 ~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~---~g~~l~~~~~v~--------~ 286 (453)
+.+.+ ...+..|...+. .|+|+|++.. .|++|+.|++|||||+++++.. ..+......... .
T Consensus 173 ~~~~~~~~~~~~~~~~v~----~v~~~p~~~~--~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGI----SVQFRPSNPN--QLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EETTEEEEEEEECSSCEE----EEEEETTEEE--EEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred CCCCceeeeecCCCCCcE----EEEECCCCCc--eEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 98733 334445555543 5999999864 4899999999999999998721 111000000000 0
Q ss_pred eeeeeeeccceeEEEEc-CCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEE------------------EEEec
Q 046773 287 WRMLTEFTEFVGRVRVT-SHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVT------------------SVDVN 345 (453)
Q Consensus 287 w~~l~~h~~~v~~v~~s-~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~------------------~~~~~ 345 (453)
-....+|.+.|.+|+++ +++ +++++.|++|++||+.++.....+.+|....... .+.+.
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 01245788899999986 454 4445667999999999876544333222111111 12222
Q ss_pred -CC-EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECC
Q 046773 346 -AE-AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVE 412 (453)
Q Consensus 346 -g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~ 412 (453)
++ .+++++.|+ +|+|||..+++++..+..+...|++++|+|++++|++++++.+.||.+.
T Consensus 327 ~~~~~~~sgs~Dg-------~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 327 YMDYFATAHSQHG-------LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp CTTEEEEEETTTT-------EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred CCCEEEEEECCCC-------EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 22 346667788 9999999999988888888888999999999999998888667777653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=227.91 Aligned_cols=265 Identities=9% Similarity=0.054 Sum_probs=198.6
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEE-----ecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEE
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRT-----FRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVA 217 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~t-----l~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvW 217 (453)
+.+++|++ .++++++.|++|++||+.++++++. +.+|.. .|.+++| ++..+++++.|++|++|
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~s~~~d~~v~~~ 196 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG--------FVETISIPEHNELWVSQMQANAVHVF 196 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC--------EEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC--------ceeEEEEcCCCEEEEEECCCCEEEEE
Confidence 45788875 5788889999999999999999884 334432 6778888 46789999999999999
Q ss_pred EeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecc
Q 046773 218 VIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 218 d~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
|+++ + ...+..|...+ ..++|+|+|+. .+++++.|++|++||+++++... .+..+ .
T Consensus 197 d~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~--l~~~~~~~~~i~~~d~~~~~~~~--------------~~~~~-~ 254 (433)
T 3bws_A 197 DLKT-LAYKATVDLTGKWS----KILLYDPIRDL--VYCSNWISEDISVIDRKTKLEIR--------------KTDKI-G 254 (433)
T ss_dssp ETTT-CCEEEEEECSSSSE----EEEEEETTTTE--EEEEETTTTEEEEEETTTTEEEE--------------ECCCC-S
T ss_pred ECCC-ceEEEEEcCCCCCe----eEEEEcCCCCE--EEEEecCCCcEEEEECCCCcEEE--------------EecCC-C
Confidence 9987 4 23333343333 24899999986 24677789999999999988432 12222 3
Q ss_pred ceeEEEEcCCc--eEEEE--------cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEE-EEEeCCCccccCcce
Q 046773 296 FVGRVRVTSHE--SAVAC--------TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAY-IVVENRELENQNRRL 364 (453)
Q Consensus 296 ~v~~v~~s~~~--~~vas--------~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l-~s~s~dg~~~~~~~~ 364 (453)
.+.+++++|++ +++++ .|++|++||+++++.+... .+.......+++++++.+ ++++.++ .
T Consensus 255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~-------~ 326 (433)
T 3bws_A 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCS-------K 326 (433)
T ss_dssp EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTT-------E
T ss_pred CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCC-------E
Confidence 47889999876 34444 2678999999998655443 232234445677778655 5557778 9
Q ss_pred EEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----------------CeEEEEECCCCeEEEEecccCCceE
Q 046773 365 AIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----------------GVIRVWEVEGGEYMYSFRERIGEEV 428 (453)
Q Consensus 365 i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----------------~tIrlWD~~tG~~l~tL~gh~~~~V 428 (453)
+++|+.++++.+..+. +...+..+.++++++++++++. ++|++||+++++.+..+.++. . +
T Consensus 327 v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-~-~ 403 (433)
T 3bws_A 327 IEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-Q-P 403 (433)
T ss_dssp EEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-S-E
T ss_pred EEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-C-C
Confidence 9999999998887776 4556889999999988877654 399999999999999988754 3 4
Q ss_pred E--EEecCCCEEEEE--eCCcEEEEecC
Q 046773 429 I--AFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 429 ~--a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
. +|+||+++|+++ .|++|+|||+.
T Consensus 404 ~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 404 TGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 4 778999998766 49999999975
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-25 Score=217.43 Aligned_cols=238 Identities=10% Similarity=0.065 Sum_probs=188.4
Q ss_pred EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeE
Q 046773 176 HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVG 252 (453)
Q Consensus 176 ~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~ 252 (453)
...+|.+|.. .|.+++|+ ++.|++|+.|++|+|||+.+.. +..+..|...+. .++|+|++++
T Consensus 24 ~~~~l~~h~~--------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~----~~~~~~~~~~--- 88 (369)
T 3zwl_B 24 KAIKLTGHER--------PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIW----SIDVDCFTKY--- 88 (369)
T ss_dssp EEEEEECCSS--------CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEE----EEEECTTSSE---
T ss_pred ccEEEEEeec--------eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEE----EEEEcCCCCE---
Confidence 3456777754 68888885 6789999999999999998722 455556766553 4899999986
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcC-----CcEEEEECCCCc
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTS-----SRVITFDLRNQG 325 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d-----~tIrlWDl~t~~ 325 (453)
|++++.|++|+|||+++++... .+. +...+.+++|+|++. ++++.+ +.|++||++++.
T Consensus 89 l~s~~~dg~i~iwd~~~~~~~~--------------~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 89 CVTGSADYSIKLWDVSNGQCVA--------------TWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp EEEEETTTEEEEEETTTCCEEE--------------EEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred EEEEeCCCeEEEEECCCCcEEE--------------Eee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 7899999999999999988432 122 667899999998774 444556 899999998764
Q ss_pred eE-----------EEEeeccC--CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC-CeeEEEEEecCCCeeEEEE
Q 046773 326 MV-----------LGERGYGR--GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-FEEVCRFSLRADRNVNVMG 391 (453)
Q Consensus 326 ~~-----------~~~~g~~~--~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~v~~l~~~~~~v~~~~~ 391 (453)
.. .....|.. .....+++++++.+++++.++ .+++||+.+ ++.+..+..+...+..+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 226 (369)
T 3zwl_B 154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG-------KISKYDVSNNYEYVDSIDLHEKSISDMQF 226 (369)
T ss_dssp TTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS-------EEEEEETTTTTEEEEEEECCSSCEEEEEE
T ss_pred cceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC-------EEEEEECCCCcEeEEEEecCCCceeEEEE
Confidence 21 11223333 455566788889999999999 999999998 7888888888888999999
Q ss_pred eeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCC--------------cEEEEecC
Q 046773 392 CMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGT--------------NIHLWDFG 452 (453)
Q Consensus 392 ~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~--------------~IklWDl~ 452 (453)
++++.++++++. ++|++||+.+++++..+. +... +. +++|+++.|+++ .|+ .|++||+.
T Consensus 227 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 303 (369)
T 3zwl_B 227 SPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCP-LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI 303 (369)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC-EEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred CCCCCEEEEecCCceEEEEECCCCceeeeec-CCCC-ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence 999999988877 999999999999999987 4444 55 778999999988 777 89999874
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=219.57 Aligned_cols=244 Identities=11% Similarity=0.122 Sum_probs=188.1
Q ss_pred EEECCCCeEEEEecCCCCCccccccceEEEEEEcC-----CeEEEEeCCCCEEEEEeecCC--c-ceEEeeecceecCce
Q 046773 168 LFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD-----SQLIFATLDGDIHVAVIDDVA--N-ETRTAHFGSVMDDGV 239 (453)
Q Consensus 168 lWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g-----~~LasgS~D~tIkvWd~~~~g--~-~~~~~~~~~v~~~~~ 239 (453)
.|+....+.++.+.+|.. .|.+++|++ ..|++|+.|++|+|||+++.+ + ..+..|.+.+.
T Consensus 23 ~~~~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~---- 90 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDD--------SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL---- 90 (368)
T ss_dssp CCSSCTTCCEECSSCCSS--------CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE----
T ss_pred cCCCCCcceeEeccCCCC--------ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE----
Confidence 445667778888888754 688899874 579999999999999998733 2 45566766654
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE--cCCc--eEEEEcCCc
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV--TSHE--SAVACTSSR 315 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~--s~~~--~~vas~d~t 315 (453)
.++|+|++++ |++|+.|++|+|||+++++.. .+.+|...|.+++| ++++ +++++.|++
T Consensus 91 ~~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~---------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 152 (368)
T 3mmy_A 91 DVCWSDDGSK---VFTASCDKTAKMWDLSSNQAI---------------QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKT 152 (368)
T ss_dssp EEEECTTSSE---EEEEETTSEEEEEETTTTEEE---------------EEEECSSCEEEEEEEECSSCEEEEEEETTSE
T ss_pred EEEECcCCCE---EEEEcCCCcEEEEEcCCCCce---------------eeccccCceEEEEEEeCCCCCEEEEccCCCc
Confidence 4899999996 889999999999999998843 24568899999999 7776 455567899
Q ss_pred EEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEe--cCCCeeEEEEee
Q 046773 316 VITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSL--RADRNVNVMGCM 393 (453)
Q Consensus 316 IrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~--~~~~v~~~~~~~ 393 (453)
|++||+++++++.....+. .+.++++.+..+++++.++ .+++|++........... .......+.+.+
T Consensus 153 i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (368)
T 3mmy_A 153 LKFWDTRSSNPMMVLQLPE---RCYCADVIYPMAVVATAER-------GLIVYQLENQPSEFRRIESPLKHQHRCVAIFK 222 (368)
T ss_dssp EEEECSSCSSCSEEEECSS---CEEEEEEETTEEEEEEGGG-------CEEEEECSSSCEEEEECCCSCSSCEEEEEEEE
T ss_pred EEEEECCCCcEEEEEecCC---CceEEEecCCeeEEEeCCC-------cEEEEEeccccchhhhccccccCCCceEEEcc
Confidence 9999999988766654443 3577788888999999999 999999987643332211 122344455555
Q ss_pred CCCe----EEEEeC-CeEEEEECCCC---eEEEEecccCC------------ceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 394 NQGY----ALMCVE-GVIRVWEVEGG---EYMYSFRERIG------------EEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 394 ~~~~----lls~s~-~tIrlWD~~tG---~~l~tL~gh~~------------~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
+... +++++. ++|+|||+.++ +++.++.+|.. . |. +|+||+++|+++ .|++|+|||
T Consensus 223 ~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 223 DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYA-VNGIAFHPVHGTLATVGSDGRFSFWD 301 (368)
T ss_dssp CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECC-EEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccc-eEEEEEecCCCEEEEEccCCeEEEEE
Confidence 4433 667766 99999999988 67888888875 4 76 678999999999 999999999
Q ss_pred cC
Q 046773 451 FG 452 (453)
Q Consensus 451 l~ 452 (453)
+.
T Consensus 302 ~~ 303 (368)
T 3mmy_A 302 KD 303 (368)
T ss_dssp TT
T ss_pred CC
Confidence 75
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=232.38 Aligned_cols=238 Identities=11% Similarity=0.092 Sum_probs=182.4
Q ss_pred CCCCCCCeEEEEEEecC---CEEEEEeCCCcEEEEECCCC-------eEEEEecCCCCCccccccceEEEEEEc--C-Ce
Q 046773 138 DVDNPDGLTCRCLTLSD---LYLACGFADGAVRLFDLTTR-------LHVRTFRPQHSDRLGQFSRAVSGIIIT--D-SQ 204 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~---~~LaSGS~D~TIrlWD~~tg-------~~~~tl~gh~~~~~~~~s~~V~~i~f~--g-~~ 204 (453)
||..+ |+|++|++ ++||||+.|++|+|||+.++ +++.++.+|.. .|.+++|+ + ..
T Consensus 79 ~h~~~----V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~--------~v~~~~~~p~~~~~ 146 (402)
T 2aq5_A 79 GHTAP----VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK--------RVGIVAWHPTAQNV 146 (402)
T ss_dssp CCSSC----EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS--------CEEEEEECSSBTTE
T ss_pred cCCCC----EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC--------eEEEEEECcCCCCE
Confidence 78854 89999975 59999999999999999999 67888988764 68888886 3 47
Q ss_pred EEEEeCCCCEEEEEeecCC--cceE--EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccC
Q 046773 205 LIFATLDGDIHVAVIDDVA--NETR--TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTD 280 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g--~~~~--~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~ 280 (453)
|++|+.|++|+|||+.+ + ...+ ..|...+. .++|+|+|++ |++++.|++|+|||+++++..
T Consensus 147 l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~----~~~~~~~~~~---l~~~~~d~~i~iwd~~~~~~~------- 211 (402)
T 2aq5_A 147 LLSAGCDNVILVWDVGT-GAAVLTLGPDVHPDTIY----SVDWSRDGAL---ICTSCRDKRVRVIEPRKGTVV------- 211 (402)
T ss_dssp EEEEETTSCEEEEETTT-TEEEEEECTTTCCSCEE----EEEECTTSSC---EEEEETTSEEEEEETTTTEEE-------
T ss_pred EEEEcCCCEEEEEECCC-CCccEEEecCCCCCceE----EEEECCCCCE---EEEEecCCcEEEEeCCCCcee-------
Confidence 99999999999999987 4 2333 33555443 4899999986 889999999999999998843
Q ss_pred Ccceeeeeee-eeeccc-eeEEEEcCCceEEEE-----cCCcEEEEECCCCceEEE-E-eeccCCeEEEEEEecCCEEEE
Q 046773 281 HNTVMGWRML-TEFTEF-VGRVRVTSHESAVAC-----TSSRVITFDLRNQGMVLG-E-RGYGRGLYVTSVDVNAEAYIV 351 (453)
Q Consensus 281 ~~~v~~w~~l-~~h~~~-v~~v~~s~~~~~vas-----~d~tIrlWDl~t~~~~~~-~-~g~~~~~~v~~~~~~g~~l~s 351 (453)
..+ .+|.+. +.++.|+|++.++++ .|++|++||+++++.... . ..+...+...+++++++.+++
T Consensus 212 -------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 284 (402)
T 2aq5_A 212 -------AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYL 284 (402)
T ss_dssp -------EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEE
T ss_pred -------eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEE
Confidence 123 456554 788999988865543 468999999998765222 2 234445556678888888865
Q ss_pred E-eCCCccccCcceEEEEEcCCCee-EEEEEec--CCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEE
Q 046773 352 V-ENRELENQNRRLAIVRRVDTFEE-VCRFSLR--ADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYM 417 (453)
Q Consensus 352 ~-s~dg~~~~~~~~i~Iw~~~tg~~-v~~l~~~--~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l 417 (453)
+ +.|+ +|+||++.+++. +..+..+ ...+..+.++|++.+++ ++++++++|++.++++.
T Consensus 285 ~g~~dg-------~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~-s~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 285 CGKGDS-------SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV-NKCEIARFYKLHERKCE 346 (402)
T ss_dssp EETTCS-------CEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG-GGTEEEEEEEEETTEEE
T ss_pred EEcCCC-------eEEEEEecCCCcceEeecccccCCcccceEEecccccce-ecceeEEEEEcCCCcEE
Confidence 4 4688 999999998874 5555544 36689999999887654 33489999999998763
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=254.42 Aligned_cols=239 Identities=10% Similarity=0.052 Sum_probs=185.0
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECC--CCeEEEEecCCCCCccccccceEEEEEEc----CCeEEEE
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLT--TRLHVRTFRPQHSDRLGQFSRAVSGIIIT----DSQLIFA 208 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~--tg~~~~tl~gh~~~~~~~~s~~V~~i~f~----g~~Lasg 208 (453)
.||..+ |+|++|++ ++||+|+.|++|+|||+. +++++.++.+|.. .|.+++|+ ++.|++|
T Consensus 6 ~gH~~~----V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~--------~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 6 NAHNEL----IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG--------PVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp --CCCC----EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS--------CEEEEEECCTTSCSEEEEE
T ss_pred ccCcce----eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcC--------ceEEEEecCCCCCCEEEEE
Confidence 489855 89999985 689999999999999998 6788999998754 68889885 6789999
Q ss_pred eCCCCEEEEEeecCC----cceEEeeecceecCceEEEEeCC--CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCc
Q 046773 209 TLDGDIHVAVIDDVA----NETRTAHFGSVMDDGVLIDFTGC--SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHN 282 (453)
Q Consensus 209 S~D~tIkvWd~~~~g----~~~~~~~~~~v~~~~~~v~Fs~d--g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~ 282 (453)
+.|++|++||+.+ + ...+..|...+. .++|+|+ |+. |++|+.|++|+|||++++....
T Consensus 74 s~Dg~I~vwd~~~-~~~~~~~~~~~h~~~V~----~v~~sp~~~~~~---l~sgs~dg~I~vwdl~~~~~~~-------- 137 (753)
T 3jro_A 74 SYDGKVLIWKEEN-GRWSQIAVHAVHSASVN----SVQWAPHEYGPL---LLVASSDGKVSVVEFKENGTTS-------- 137 (753)
T ss_dssp ETTSCEEEEEEET-TEEEEEEEECCCSSCEE----EEEECCGGGCSE---EEEEETTSEEEEEECCSSSCCC--------
T ss_pred eCCCeEEEEECCC-CcccccccccCCCCCeE----EEEECCCCCCCE---EEEEeCCCcEEEEEeecCCCcc--------
Confidence 9999999999987 4 123334544443 5899999 875 8899999999999999874110
Q ss_pred ceeeeeeeeeeccceeEEEEcCC-------------c--eEEEEcCCcEEEEECCCCc----eEEEEeeccCCeEEEEEE
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSH-------------E--SAVACTSSRVITFDLRNQG----MVLGERGYGRGLYVTSVD 343 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~-------------~--~~vas~d~tIrlWDl~t~~----~~~~~~g~~~~~~v~~~~ 343 (453)
-..+.+|...|.++.|+|. + +++++.|++|++||++++. +.....+|...+...+++
T Consensus 138 ----~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 138 ----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp ----CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred ----eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence 0235678889999999883 2 5666778999999999874 233345666666666677
Q ss_pred ec---CCEEEEEeCCCccccCcceEEEEEcCCCee-----EEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 344 VN---AEAYIVVENRELENQNRRLAIVRRVDTFEE-----VCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 344 ~~---g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~-----v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
|+ ++.+++++.|+ +|+||+..+++. +.....+...+..+.++|++.++++++. ++|+|||+.++
T Consensus 214 p~~~~~~~l~s~s~Dg-------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 214 PTVLLRSYLASVSQDR-------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CCCSSSEEEEEEESSS-------CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred cCCCCCCEEEEEecCC-------EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 77 77899999999 999999988642 2222235566888999999999988877 99999999853
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=226.24 Aligned_cols=208 Identities=13% Similarity=0.027 Sum_probs=147.0
Q ss_pred EEEEEecCC------EEEEEeCCCcEEEEECCCCeEEEEe-cCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEe
Q 046773 147 CRCLTLSDL------YLACGFADGAVRLFDLTTRLHVRTF-RPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~~------~LaSGS~D~TIrlWD~~tg~~~~tl-~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~ 219 (453)
|++|+|+++ ++++++ ++++||++.+|+.+.+. .| .|++|++|++
T Consensus 114 v~sla~spd~~~~~~~l~s~g--~~~~v~~l~~g~lv~ss~~g---------------------------~d~~V~~~~~ 164 (356)
T 2w18_A 114 IRALFCSSDDESEKQVLLKSG--NIKAVLGLTKRRLVSSSGTL---------------------------SDQQVEVMTF 164 (356)
T ss_dssp EEEECC------CCEEEEEEE--EEEEEEEETTTEEEEEESSS---------------------------TTCEEEEEEE
T ss_pred eEEEEECCCccccccEEEeCC--CeEEEEecCCCcEEEecccC---------------------------CCCcEEEEEE
Confidence 666777654 566666 33777777666655442 22 3677888888
Q ss_pred ecCC--cceEEeeecceecCceEEEEeC---CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee-
Q 046773 220 DDVA--NETRTAHFGSVMDDGVLIDFTG---CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF- 293 (453)
Q Consensus 220 ~~~g--~~~~~~~~~~v~~~~~~v~Fs~---dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h- 293 (453)
...| +..+.+|...+. .++|+| ++.. |+|||.|+||||||++||+++ ++|.+|
T Consensus 165 s~dG~~~~s~~~~~~~v~----~l~fs~~~g~~~~---LaSgS~D~TIkIWDl~TGk~l--------------~tL~g~~ 223 (356)
T 2w18_A 165 AEDGGGKENQFLMPPEET----ILTFAEVQGMQEA---LLGTTIMNNIVIWNLKTGQLL--------------KKMHIDD 223 (356)
T ss_dssp CTTSCEEEEEEECCCSSC----EEEEEEEETSTTE---EEEEETTSEEEEEETTTCCEE--------------EEEECCC
T ss_pred CCCCceeeeeccCCCcee----eEEeeccCCCCce---EEEecCCCcEEEEECCCCcEE--------------EEEcCCC
Confidence 5435 344556655432 578888 6675 899999999999999999854 234333
Q ss_pred --ccceeEEEEcCCceEE--------------EEcCCcEEEEECCCCceEEEEe---eccCCeEEEEEEecCCEEEEEeC
Q 046773 294 --TEFVGRVRVTSHESAV--------------ACTSSRVITFDLRNQGMVLGER---GYGRGLYVTSVDVNAEAYIVVEN 354 (453)
Q Consensus 294 --~~~v~~v~~s~~~~~v--------------as~d~tIrlWDl~t~~~~~~~~---g~~~~~~v~~~~~~g~~l~s~s~ 354 (453)
...+.+++|+|++..+ ++.|.+||+||+.+++++.... ..+|...+.+.++++..+++++.
T Consensus 224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~ 303 (356)
T 2w18_A 224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILT 303 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEET
T ss_pred cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcC
Confidence 2456777899877532 3457899999999987765431 11222234566777888999999
Q ss_pred CCccccCcceEEEEEcCCCeeEEEEEecCCCee-EEEEeeCCCeEEEEeC-CeEEEEEC
Q 046773 355 RELENQNRRLAIVRRVDTFEEVCRFSLRADRNV-NVMGCMNQGYALMCVE-GVIRVWEV 411 (453)
Q Consensus 355 dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~-~~~~~~~~~~lls~s~-~tIrlWD~ 411 (453)
|+ +|||||+.+++++.++..|.+.+. .++|+|++.++++++. ++|||||+
T Consensus 304 Dg-------TIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 304 SG-------TIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TS-------CEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CC-------cEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99 999999999999999988876655 5889999999999987 99999996
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=230.51 Aligned_cols=243 Identities=12% Similarity=0.116 Sum_probs=182.0
Q ss_pred CCCCCCCeEEEEEEecCC---EEEEEeCCCcEEEEECCC----------CeEEEEecCCCCCccccccceEEEEEEcCCe
Q 046773 138 DVDNPDGLTCRCLTLSDL---YLACGFADGAVRLFDLTT----------RLHVRTFRPQHSDRLGQFSRAVSGIIITDSQ 204 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~~---~LaSGS~D~TIrlWD~~t----------g~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~ 204 (453)
+|..+ |++++|+++ +||+|+.|++|+|||+.+ .+++.++.+|
T Consensus 126 ~h~~~----v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h--------------------- 180 (430)
T 2xyi_A 126 NHEGE----VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH--------------------- 180 (430)
T ss_dssp EESSC----CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC---------------------
T ss_pred cCCCc----EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC---------------------
Confidence 57633 789999873 899999999999999987 3333444333
Q ss_pred EEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcce
Q 046773 205 LIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTV 284 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v 284 (453)
...+. .|+|+|+++. .|++|+.|++|+|||+.++.... ..+
T Consensus 181 --------------------------~~~v~----~l~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~-------~~~ 221 (430)
T 2xyi_A 181 --------------------------QKEGY----GLSWNPNLNG--YLLSASDDHTICLWDINATPKEH-------RVI 221 (430)
T ss_dssp --------------------------SSCCC----CEEECTTSTT--EEEEECTTSCEEEEETTSCCBGG-------GEE
T ss_pred --------------------------CCCeE----EEEeCCCCCC--eEEEEeCCCeEEEEeCCCCCCCC-------cee
Confidence 22221 3788888772 27899999999999998743100 000
Q ss_pred eeeeeeeeeccceeEEEEcC-Cc-e-EEEEcCCcEEEEECCCC---ceEEEEeeccCCeEEEEEEecCC-EEEEEeCCCc
Q 046773 285 MGWRMLTEFTEFVGRVRVTS-HE-S-AVACTSSRVITFDLRNQ---GMVLGERGYGRGLYVTSVDVNAE-AYIVVENREL 357 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~-~~-~-~vas~d~tIrlWDl~t~---~~~~~~~g~~~~~~v~~~~~~g~-~l~s~s~dg~ 357 (453)
.....+.+|...|.+++|+| +. + ++++.|++|++||++++ .++.....|...+...+|++++. .+++++.|+
T Consensus 222 ~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg- 300 (430)
T 2xyi_A 222 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK- 300 (430)
T ss_dssp ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-
T ss_pred ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC-
Confidence 00134668889999999997 33 3 34456899999999987 34444456666655566667666 588999999
Q ss_pred cccCcceEEEEEcCC-CeeEEEEEecCCCeeEEEEeeCCCe-EEEEeC-CeEEEEECCC--------------CeEEEEe
Q 046773 358 ENQNRRLAIVRRVDT-FEEVCRFSLRADRNVNVMGCMNQGY-ALMCVE-GVIRVWEVEG--------------GEYMYSF 420 (453)
Q Consensus 358 ~~~~~~~i~Iw~~~t-g~~v~~l~~~~~~v~~~~~~~~~~~-lls~s~-~tIrlWD~~t--------------G~~l~tL 420 (453)
+|+|||+.+ .+++..+..|...+..+.++|++.+ +++++. ++|+|||+.+ .+++..+
T Consensus 301 ------~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 374 (430)
T 2xyi_A 301 ------TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 374 (430)
T ss_dssp ------EEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC
T ss_pred ------eEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc
Confidence 999999998 5678888888888999999999865 555555 9999999987 4778888
Q ss_pred cccCCceEE--EEecCCC-EEEEE-eCCcEEEEecC
Q 046773 421 RERIGEEVI--AFVGDDR-HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 421 ~gh~~~~V~--a~s~d~~-~lasg-~D~~IklWDl~ 452 (453)
.+|.+. |. +++|+++ .|+++ .|++|+||++.
T Consensus 375 ~~h~~~-v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 375 GGHTAK-ISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CCCSSC-EEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCCC-ceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 999988 87 6679998 88888 99999999974
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=218.01 Aligned_cols=226 Identities=17% Similarity=0.084 Sum_probs=178.6
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC----cceEEeeecceecCceEEEEeCCCc-eeeEEEEeeCCCeEEEee
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA----NETRTAHFGSVMDDGVLIDFTGCSR-YWVGLYAGLAGRAFHIWD 266 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g----~~~~~~~~~~v~~~~~~v~Fs~dg~-~~~~LaSgS~D~tIrvWD 266 (453)
.|.+++|+ +..|++|+.|++|+||++.+.. ......|...+. .++|+|+++ + |++|+.|++|+|||
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~---l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL----CCNFIDNTDLQ---IYVGTVQGEILKVD 85 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE----EEEEEESSSEE---EEEEETTSCEEEEC
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceE----EEEECCCCCcE---EEEEcCCCeEEEEE
Confidence 68888875 6789999999999999998732 233344544443 489999998 6 78999999999999
Q ss_pred C-CCCcEEecccccCCcceeeeeeeee--eccceeEEEEcCCc-eEEEEcCCcEEEEECCC---------CceEEEEeec
Q 046773 267 R-QAEEVFVGGDLTDHNTVMGWRMLTE--FTEFVGRVRVTSHE-SAVACTSSRVITFDLRN---------QGMVLGERGY 333 (453)
Q Consensus 267 ~-~tg~~~~g~~l~~~~~v~~w~~l~~--h~~~v~~v~~s~~~-~~vas~d~tIrlWDl~t---------~~~~~~~~g~ 333 (453)
+ ++++.. .+.+ |...|.+++|+|.. +++++.|++|++||+++ ++++....
T Consensus 86 ~~~~~~~~---------------~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-- 148 (342)
T 1yfq_A 86 LIGSPSFQ---------------ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-- 148 (342)
T ss_dssp SSSSSSEE---------------ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--
T ss_pred eccCCceE---------------eccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--
Confidence 9 888742 3456 88999999999733 45556789999999987 55443332
Q ss_pred cCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC-Cee--EEEEEecCCCeeEEEEee-CCCeEEEEeC-CeEEE
Q 046773 334 GRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT-FEE--VCRFSLRADRNVNVMGCM-NQGYALMCVE-GVIRV 408 (453)
Q Consensus 334 ~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t-g~~--v~~l~~~~~~v~~~~~~~-~~~~lls~s~-~tIrl 408 (453)
+...+.++.++++.+++++.++ .++||++.+ +.. ......+...+..+.+++ ++.++++++. ++|+|
T Consensus 149 -~~~~v~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i 220 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSRLIVGMNNS-------QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV 220 (342)
T ss_dssp -SCCCEEEEEECSSEEEEEESTT-------EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEE
T ss_pred -eCCceEEEEecCCcEEEEeCCC-------eEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEE
Confidence 3345678888888899999999 999999998 543 223334556688999999 9999888887 99999
Q ss_pred EECCCC------eEEEEecccCC---------ceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 409 WEVEGG------EYMYSFRERIG---------EEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 409 WD~~tG------~~l~tL~gh~~---------~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
||+..+ +++.++.+|.. . |. +|+||+++|+++ .|++|+|||+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP-VNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC-EEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred EEEcCCCcccccccceeeeccccccccccccee-EEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 999987 88899998865 6 77 678999999999 99999999975
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-24 Score=212.01 Aligned_cols=265 Identities=10% Similarity=0.061 Sum_probs=192.6
Q ss_pred EEEEEecC--CEE-EEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeE-EEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYL-ACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQL-IFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~L-aSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~L-asgS~D~tIkvWd~~ 220 (453)
+.+++|++ ++| ++++.|++|++||+.++++++++..++ .+.+++|+ ++.| ++++.|++|++||+.
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---------~v~~~~~spdg~~l~~~~~~~~~v~v~d~~ 104 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS---------SPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---------SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC---------CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence 68999986 455 788899999999999999999997543 46778776 5666 456678999999998
Q ss_pred cCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 221 DVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 221 ~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
+ + ...+..+ .. ...++|+|+|+.+ +++++.|++|++||+++++... .+..+ ..+.
T Consensus 105 ~-~~~~~~~~~~-~~----~~~~~~s~dg~~l--~~~~~~~~~v~~~d~~~~~~~~--------------~~~~~-~~~~ 161 (391)
T 1l0q_A 105 S-NTVAGTVKTG-KS----PLGLALSPDGKKL--YVTNNGDKTVSVINTVTKAVIN--------------TVSVG-RSPK 161 (391)
T ss_dssp T-TEEEEEEECS-SS----EEEEEECTTSSEE--EEEETTTTEEEEEETTTTEEEE--------------EEECC-SSEE
T ss_pred C-CeEEEEEeCC-CC----cceEEECCCCCEE--EEEeCCCCEEEEEECCCCcEEE--------------EEecC-CCcc
Confidence 7 4 2222222 11 1258999999962 4688899999999999988431 22233 3467
Q ss_pred EEEEcCCce-E-EEE-cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEe---CCCccccCcceEEEEEcCC
Q 046773 299 RVRVTSHES-A-VAC-TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVE---NRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 299 ~v~~s~~~~-~-vas-~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s---~dg~~~~~~~~i~Iw~~~t 372 (453)
.++|+|++. + +++ .+++|++||+++++++.... +.......+|+++++.+++++ .++ .+++||..+
T Consensus 162 ~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~-------~v~~~d~~~ 233 (391)
T 1l0q_A 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFN-------TVSMIDTGT 233 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCC-------EEEEEETTT
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCC-------cEEEEECCC
Confidence 899998773 3 444 45789999999987665543 222333456777888888877 466 999999999
Q ss_pred CeeEEEEEecCCCeeEEEEeeCCCeEEEE-eC-CeEEEEECCCCeEEEEecccCCce----------------EEEEecC
Q 046773 373 FEEVCRFSLRADRNVNVMGCMNQGYALMC-VE-GVIRVWEVEGGEYMYSFRERIGEE----------------VIAFVGD 434 (453)
Q Consensus 373 g~~v~~l~~~~~~v~~~~~~~~~~~lls~-s~-~tIrlWD~~tG~~l~tL~gh~~~~----------------V~a~s~d 434 (453)
++.+..+..+. .+..+.+++++++++.+ +. ++|++||+++++++.++..|.... +..|+.+
T Consensus 234 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~ 312 (391)
T 1l0q_A 234 NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSN 312 (391)
T ss_dssp TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEES
T ss_pred CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccc
Confidence 99888887654 46788899999888544 44 999999999999999987765431 1123322
Q ss_pred C----------CEEEEE-eCCcEEEEecC
Q 046773 435 D----------RHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 435 ~----------~~lasg-~D~~IklWDl~ 452 (453)
. ..+++. .|.++++||++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 341 (391)
T 1l0q_A 313 ITSGYIFLSEPVQFTDLSKDATEWKWDFG 341 (391)
T ss_dssp CCSSEEETTCCEEEEECCBSCSEEEEECS
T ss_pred cccccccccceEEEEeCCCCceEEEEECC
Confidence 1 345555 79999999985
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=246.23 Aligned_cols=241 Identities=13% Similarity=0.154 Sum_probs=184.6
Q ss_pred EEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC-C--cceEEeeecceecCceEEEEeCC--Cce
Q 046773 177 VRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV-A--NETRTAHFGSVMDDGVLIDFTGC--SRY 249 (453)
Q Consensus 177 ~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~-g--~~~~~~~~~~v~~~~~~v~Fs~d--g~~ 249 (453)
+.++.||.. .|.+++|+ ++.|++|+.|++|+|||+... + ..++.+|.+.|. .++|+|+ +++
T Consensus 2 ~~~l~gH~~--------~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~----~l~~s~~~~~~~ 69 (753)
T 3jro_A 2 VVIANAHNE--------LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW----RVDWAHPKFGTI 69 (753)
T ss_dssp ------CCC--------CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE----EEEECCTTSCSE
T ss_pred eeecccCcc--------eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE----EEEecCCCCCCE
Confidence 356777654 68888875 678999999999999999841 2 345556766554 4899988 775
Q ss_pred eeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC--c--eEEEEcCCcEEEEECCCCc
Q 046773 250 WVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH--E--SAVACTSSRVITFDLRNQG 325 (453)
Q Consensus 250 ~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~--~--~~vas~d~tIrlWDl~t~~ 325 (453)
|++|+.|++|+|||+.+++... ...+.+|...|.+++|+|+ + +++++.|++|++||++++.
T Consensus 70 ---l~s~s~Dg~I~vwd~~~~~~~~------------~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 70 ---LASCSYDGKVLIWKEENGRWSQ------------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp ---EEEEETTSCEEEEEEETTEEEE------------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred ---EEEEeCCCeEEEEECCCCcccc------------cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 8899999999999999986211 1346678899999999986 4 4566778999999999874
Q ss_pred eE--EEEeeccCCeEEEEEEe-------------cCCEEEEEeCCCccccCcceEEEEEcCCC----eeEEEEEecCCCe
Q 046773 326 MV--LGERGYGRGLYVTSVDV-------------NAEAYIVVENRELENQNRRLAIVRRVDTF----EEVCRFSLRADRN 386 (453)
Q Consensus 326 ~~--~~~~g~~~~~~v~~~~~-------------~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg----~~v~~l~~~~~~v 386 (453)
+. ....+|...+...+++| +++.+++++.|+ +|+|||..++ .++..+..|...+
T Consensus 135 ~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg-------~I~iwd~~~~~~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-------LVKIWKYNSDAQTYVLESTLEGHSDWV 207 (753)
T ss_dssp CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS-------CEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC-------eEEEEeccCCcccceeeeeecCCCCcE
Confidence 32 23355655555555666 478899999999 9999999876 5566777888889
Q ss_pred eEEEEeeC---CCeEEEEeC-CeEEEEECCCCe-----EEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 387 VNVMGCMN---QGYALMCVE-GVIRVWEVEGGE-----YMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 387 ~~~~~~~~---~~~lls~s~-~tIrlWD~~tG~-----~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
..+.++|+ +.++++++. ++|+|||+.+++ .+....+|.+. |+ +|+||+++|+++ .|+.|+|||+.
T Consensus 208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-LWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC-CCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc-eEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 99999999 778888776 999999999874 34444567777 76 788999999999 99999999975
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=209.37 Aligned_cols=252 Identities=11% Similarity=0.096 Sum_probs=166.2
Q ss_pred CCCCCCCeEEEEEEec----CCEEEEEeCCCcEEEEECCCC---------eEEEEecCCCCCccccccceEEEEEEc---
Q 046773 138 DVDNPDGLTCRCLTLS----DLYLACGFADGAVRLFDLTTR---------LHVRTFRPQHSDRLGQFSRAVSGIIIT--- 201 (453)
Q Consensus 138 gh~~~d~v~v~~lafs----~~~LaSGS~D~TIrlWD~~tg---------~~~~tl~gh~~~~~~~~s~~V~~i~f~--- 201 (453)
+|..+ |+|++|+ +++|++|+.|++|+|||+.++ +++.++.+|.. .|.+++|+
T Consensus 55 ~~~~~----v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~ 122 (351)
T 3f3f_A 55 AHDSS----IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG--------SLYSVKFAPAH 122 (351)
T ss_dssp CCSSC----EEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSS--------CEEEEEECCGG
T ss_pred cCCCc----EEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCC--------ceeEEEEcCCC
Confidence 78754 8999996 469999999999999999998 67888887654 57888886
Q ss_pred -CCeEEEEeCCCCEEEEEeecCC-cceEEe-------------eecceecCceEEEEeCC---CceeeEEEEeeCCCeEE
Q 046773 202 -DSQLIFATLDGDIHVAVIDDVA-NETRTA-------------HFGSVMDDGVLIDFTGC---SRYWVGLYAGLAGRAFH 263 (453)
Q Consensus 202 -g~~LasgS~D~tIkvWd~~~~g-~~~~~~-------------~~~~v~~~~~~v~Fs~d---g~~~~~LaSgS~D~tIr 263 (453)
+..|++++.|++|++||+.+.. +..+.. |... ...++|+|+ ++. |++++.|+.+.
T Consensus 123 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~---l~~~~~~~~~~ 195 (351)
T 3f3f_A 123 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS----DFCLSWCPSRFSPEK---LAVSALEQAII 195 (351)
T ss_dssp GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCC----CEEEEECCCSSSCCE---EEEEETTEEEE
T ss_pred CCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccc----eeEEEeccCCCCCcE---EEEecCCCcEE
Confidence 5689999999999999997622 222221 1111 225899997 664 88999999998
Q ss_pred EeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc------eEEEEcCCcEEEEECCCCceEEEEeeccCCe
Q 046773 264 IWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE------SAVACTSSRVITFDLRNQGMVLGERGYGRGL 337 (453)
Q Consensus 264 vWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~------~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~ 337 (453)
+|+..+++... ...+.+|..+|.+++|+|++ +++++.|++|++||++++.+......+....
T Consensus 196 ~~~~~~~~~~~------------~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 263 (351)
T 3f3f_A 196 YQRGKDGKLHV------------AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 263 (351)
T ss_dssp EEECTTSCEEE------------EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------
T ss_pred EEccCCCceee------------eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccce
Confidence 88888776311 13567889999999999985 4555678999999999875543321111111
Q ss_pred EEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCe-
Q 046773 338 YVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGE- 415 (453)
Q Consensus 338 ~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~- 415 (453)
......+.......+..++ .....+.+|+..+.+++..+..|...+..+.+++++.++++++. ++|+|||+.+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 264 NMFDNSADVDMDAQGRSDS---NTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred eccCCCccccccccccccc---ccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 1111222222222222211 11114556666666778888888888999999999999998887 999999999984
Q ss_pred --EEEEeccc
Q 046773 416 --YMYSFRER 423 (453)
Q Consensus 416 --~l~tL~gh 423 (453)
|+..+..|
T Consensus 341 ~~~~~~~~~~ 350 (351)
T 3f3f_A 341 FKCMSVITAQ 350 (351)
T ss_dssp EEEEEEEC--
T ss_pred hhheeehccc
Confidence 45555443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=235.05 Aligned_cols=260 Identities=6% Similarity=-0.044 Sum_probs=177.6
Q ss_pred CCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCCccccccceEEEEEEc--CCeEEEEeCCCC
Q 046773 137 SDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFR-PQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGD 213 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~-gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~t 213 (453)
+||. .. |++++|+|+- ++++|++.++++...+. +| . ..|.+++|+ |..||++|.|++
T Consensus 49 ~gh~--~~--v~~V~FsPdg--------~~~~~~~~~~~~~~~~~~~~-~-------~~V~~vawSPdG~~LAs~s~dg~ 108 (588)
T 2j04_A 49 NCNS--KN--LFHVKEFPLE--------FENKLDFELAQQNGLLNSQP-V-------CYPRVCKPSPIDDWMAVLSNNGN 108 (588)
T ss_dssp SSBG--GG--TEEEEEECCC--------CCCTTTTSCCCSSCSSTTSC-S-------CCEEEEEECSSSSCEEEEETTSC
T ss_pred cCCC--cc--EEEEEECCCC--------CcceEEEEeCCCceEeecCC-C-------CcEEEEEECCCCCEEEEEeCCCc
Confidence 3787 33 7899998853 55566666666544554 33 2 267888875 678999999999
Q ss_pred EEEEEeecCCcceEEeeecceecC-ceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeee--
Q 046773 214 IHVAVIDDVANETRTAHFGSVMDD-GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRML-- 290 (453)
Q Consensus 214 IkvWd~~~~g~~~~~~~~~~v~~~-~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l-- 290 (453)
|+|||.++ -+..+. |...+... ...|+|||||++ ||+|+.|++|+|||+.++... .+. +...+++
T Consensus 109 V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~---LAsgs~DGtVkIWd~~~~~l~------~~~-~i~l~ti~~ 176 (588)
T 2j04_A 109 VSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESS---IVVGNEDGELQFFSIRKNSEN------TPE-FYFESSIRL 176 (588)
T ss_dssp EEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSC---EEEEETTSEEEEEECCCCTTT------CCC-CEEEEEEEC
T ss_pred EEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCE---EEEEcCCCEEEEEECCCCccc------ccc-ceeeeeeec
Confidence 99999543 223333 43321111 125999999997 899999999999999987420 000 0001333
Q ss_pred --eeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceE---EEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcce
Q 046773 291 --TEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMV---LGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRL 364 (453)
Q Consensus 291 --~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~---~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~ 364 (453)
.+|.++|.+|+|+|+++++++.|++||+||+.++.+. .++ .+|. ..|.+++++++.+++++ ++ +
T Consensus 177 ~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~--~~V~svaFsg~~LASa~-~~-------t 246 (588)
T 2j04_A 177 SDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASR--RKITDLKIVDYKVVLTC-PG-------Y 246 (588)
T ss_dssp SCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCS--SCCCCEEEETTEEEEEC-SS-------E
T ss_pred ccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeeccccc--CcEEEEEEECCEEEEEe-CC-------e
Confidence 5677899999999999666678899999999987632 233 2443 34566666678888886 68 9
Q ss_pred EEEEEcCCCeeEEEEEecCCCeeEEEE--eeCCCeEEEEeC-CeEEEEECCC-----------------------CeEEE
Q 046773 365 AIVRRVDTFEEVCRFSLRADRNVNVMG--CMNQGYALMCVE-GVIRVWEVEG-----------------------GEYMY 418 (453)
Q Consensus 365 i~Iw~~~tg~~v~~l~~~~~~v~~~~~--~~~~~~lls~s~-~tIrlWD~~t-----------------------G~~l~ 418 (453)
|++|+..+++.......|.+.+..+.+ ++++..++++.. |+ |||.... |..+.
T Consensus 247 IkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~ 325 (588)
T 2j04_A 247 VHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFN 325 (588)
T ss_dssp EEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSS
T ss_pred EEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCcee
Confidence 999999988764333368888999999 888767666664 88 8887631 22233
Q ss_pred EecccCCceEE--EEecCCCEEEEE
Q 046773 419 SFRERIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 419 tL~gh~~~~V~--a~s~d~~~lasg 441 (453)
.+++ ... |. +|+|||+.||++
T Consensus 326 ~~~~-~~~-I~~va~SPdG~~lA~~ 348 (588)
T 2j04_A 326 NYET-TLV-IHGISLSPDGYSIAIV 348 (588)
T ss_dssp SSCC-EEE-EEEEEECTTSSEEEEE
T ss_pred eecc-ceE-EEEEEECCCCCEEEEE
Confidence 3332 223 66 788999999987
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=214.20 Aligned_cols=258 Identities=11% Similarity=0.047 Sum_probs=185.8
Q ss_pred CEEEEEe----CCC----cEEEEEC--CCCeEE--EEecCCCCCccccccceEEEEEEc----------------CCeEE
Q 046773 155 LYLACGF----ADG----AVRLFDL--TTRLHV--RTFRPQHSDRLGQFSRAVSGIIIT----------------DSQLI 206 (453)
Q Consensus 155 ~~LaSGS----~D~----TIrlWD~--~tg~~~--~tl~gh~~~~~~~~s~~V~~i~f~----------------g~~La 206 (453)
+++|+|+ .|+ +|||||+ .+++++ .++.+|... ++.+++. +.+|+
T Consensus 76 ~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~g~~~~~~~~l~ 147 (415)
T 2hqs_A 76 DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQW--------LRYAGHTASDEVFEKLTGIKGAFRTRIA 147 (415)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGG--------HHHHHHHHHHHHHHHHHSSCCCTTCEEE
T ss_pred CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhH--------HHHHHHHHHHHHHHHHcCCCCcCCCEEE
Confidence 4677776 356 9999999 999988 558876432 2222221 56788
Q ss_pred EEeCC------CCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCC---eEEEeeCCCCcEEeccc
Q 046773 207 FATLD------GDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGR---AFHIWDRQAEEVFVGGD 277 (453)
Q Consensus 207 sgS~D------~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~---tIrvWD~~tg~~~~g~~ 277 (453)
+++.+ ++|++||++......+..|...+. .++|+|||++ |++++.|+ +|++||+++++..
T Consensus 148 ~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~----~~~~Spdg~~---la~~s~~~~~~~i~~~d~~tg~~~---- 216 (415)
T 2hqs_A 148 YVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLM----SPAWSPDGSK---LAYVTFESGRSALVIQTLANGAVR---- 216 (415)
T ss_dssp EEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEE----EEEECTTSSE---EEEEECTTSSCEEEEEETTTCCEE----
T ss_pred EEEecCCCCccceEEEEcCCCCCCEEEeCCCCcce----eeEEcCCCCE---EEEEEecCCCcEEEEEECCCCcEE----
Confidence 77765 799999997622566666765543 4899999997 77888875 9999999998842
Q ss_pred ccCCcceeeeeeeeeeccceeEEEEcCCceEE--EE-cCC--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEE
Q 046773 278 LTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV--AC-TSS--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVV 352 (453)
Q Consensus 278 l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v--as-~d~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~ 352 (453)
.+..|...+.+++|+|++..+ ++ .++ .|++||++++++ .++..|.......+|+|+|+.++.+
T Consensus 217 -----------~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~ 284 (415)
T 2hqs_A 217 -----------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFT 284 (415)
T ss_dssp -----------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEE
T ss_pred -----------EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEE
Confidence 244566788999999988533 33 343 599999999765 4444555555556788889888888
Q ss_pred eC-CCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCCCeEEEEecccCCce
Q 046773 353 EN-RELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIGEE 427 (453)
Q Consensus 353 s~-dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~~ 427 (453)
+. ++ ...+.+|+.++++. ..+..+...+..+.++|++++++.++. .+|++||++++++ ..|..|. .
T Consensus 285 s~~~g-----~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~- 355 (415)
T 2hqs_A 285 SDQAG-----RPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-L- 355 (415)
T ss_dssp ECTTS-----SCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-S-
T ss_pred ECCCC-----CcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-C-
Confidence 75 34 11455567777653 445556666788899999999887653 5999999999987 4566664 3
Q ss_pred EE--EEecCCCEEEEE-eCC---cEEEEecC
Q 046773 428 VI--AFVGDDRHVAAS-CGT---NIHLWDFG 452 (453)
Q Consensus 428 V~--a~s~d~~~lasg-~D~---~IklWDl~ 452 (453)
+. +|+|||++|+++ .|+ .|++||+.
T Consensus 356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 356 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp CEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 44 789999999887 665 79999874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-22 Score=206.85 Aligned_cols=239 Identities=12% Similarity=0.113 Sum_probs=178.1
Q ss_pred CCCCCCCeEEEEEEecC--CEE-EEEeCCCcEEEEECC--CCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYL-ACGFADGAVRLFDLT--TRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATL 210 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~L-aSGS~D~TIrlWD~~--tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~ 210 (453)
+|.++ |+|++|++ ++| |+|+.|++|+|||+. ++++++++..|.. ...|.+++|+ +..|++|+.
T Consensus 100 ~~~~~----v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~~ 169 (450)
T 2vdu_B 100 PIYSY----IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF------SKRPNAISIAEDDTTVIIADK 169 (450)
T ss_dssp CCCCC----EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC------SSCEEEEEECTTSSEEEEEET
T ss_pred ccCCc----eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC------CCCceEEEEcCCCCEEEEEeC
Confidence 56633 88999986 565 999999999999999 9999999874321 1257888885 678999999
Q ss_pred CCCEEEEEeecCC-cc----eEEeeecceecCceEEEEeCC---CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCc
Q 046773 211 DGDIHVAVIDDVA-NE----TRTAHFGSVMDDGVLIDFTGC---SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHN 282 (453)
Q Consensus 211 D~tIkvWd~~~~g-~~----~~~~~~~~v~~~~~~v~Fs~d---g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~ 282 (453)
|++|++|++.+.. .. .+.+|...+. .|+|+|+ +++ |++|+.|++|+|||+++++.+.
T Consensus 170 ~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~----~~~~sp~~~~~~~---l~s~~~d~~i~vwd~~~~~~~~-------- 234 (450)
T 2vdu_B 170 FGDVYSIDINSIPEEKFTQEPILGHVSMLT----DVHLIKDSDGHQF---IITSDRDEHIKISHYPQCFIVD-------- 234 (450)
T ss_dssp TSEEEEEETTSCCCSSCCCCCSEECSSCEE----EEEEEECTTSCEE---EEEEETTSCEEEEEESCTTCEE--------
T ss_pred CCcEEEEecCCcccccccceeeecccCceE----EEEEcCCCCCCcE---EEEEcCCCcEEEEECCCCceee--------
Confidence 9999999987622 22 5666766554 4899999 886 8899999999999999887431
Q ss_pred ceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeec-------------------------cC
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGY-------------------------GR 335 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~-------------------------~~ 335 (453)
..+.+|..+|.+++|+ ++ +++++.|++|+|||+++++++.....+ ..
T Consensus 235 -----~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 235 -----KWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp -----EECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred -----eeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 1245788999999998 54 556677899999999999877665321 11
Q ss_pred CeEEEEEEecCCEEEEEe-CCCccccCcceEEEEEc--CCC---eeEEEEEecCCCeeEEEEeeCCCeEEEEeC------
Q 046773 336 GLYVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRV--DTF---EEVCRFSLRADRNVNVMGCMNQGYALMCVE------ 403 (453)
Q Consensus 336 ~~~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~--~tg---~~v~~l~~~~~~v~~~~~~~~~~~lls~s~------ 403 (453)
.+.-.++.++++.+++++ .++ .|+||++ .++ +.+..+..+ ..+..+.++++ +.+++++.
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~-------~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~-~~~v~~~~~~~~~~ 379 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATK-------CIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND-EFQVTLDNKESSGV 379 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCS-------EEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT-EEEEEECCTTCCSS
T ss_pred EEEEEEEeCCCCEEEEEECCCC-------eEEEEEeccCCCCceeeccEeccC-CceEEEEecCC-cEEEEEecccCCCC
Confidence 222345567788888888 778 9999999 666 677777776 66888888884 45554432
Q ss_pred --CeEEEEECC--CCeE
Q 046773 404 --GVIRVWEVE--GGEY 416 (453)
Q Consensus 404 --~tIrlWD~~--tG~~ 416 (453)
+.|+||.+. +++.
T Consensus 380 ~~~~i~v~~~~~~~~~~ 396 (450)
T 2vdu_B 380 QKNFAKFIEYNLNENSF 396 (450)
T ss_dssp CCCSEEEEEEETTTTEE
T ss_pred CCcceEEEEEEcCCCeE
Confidence 348888654 4554
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=206.31 Aligned_cols=228 Identities=11% Similarity=-0.010 Sum_probs=151.7
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECC---------CCeEEEEecCCCCCccccccceEEEEEEc----CCeEEEEeCCCC
Q 046773 147 CRCLTLSDLYLACGFADGAVRLFDLT---------TRLHVRTFRPQHSDRLGQFSRAVSGIIIT----DSQLIFATLDGD 213 (453)
Q Consensus 147 v~~lafs~~~LaSGS~D~TIrlWD~~---------tg~~~~tl~gh~~~~~~~~s~~V~~i~f~----g~~LasgS~D~t 213 (453)
|.+++|.+. |+|||.|++|++|+.. ++++++.+.-.|. ..|.+++|+ ++.+++||.|++
T Consensus 79 v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~s~s~dg~ 150 (343)
T 3lrv_A 79 PRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA-------NEIIYMYGHNEVNTEYFIWADNRGT 150 (343)
T ss_dssp CCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS-------SCEEEEECCC---CCEEEEEETTCC
T ss_pred ceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC-------CCEEEEEcCCCCCCCEEEEEeCCCc
Confidence 345666777 9999999999999655 7776666652221 257778764 568999999999
Q ss_pred EEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee-
Q 046773 214 IHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE- 292 (453)
Q Consensus 214 IkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~- 292 (453)
|++||+++ + ..+..........-..++|+|||++ |++|+.|++|+|||+++++... ..+..
T Consensus 151 i~~wd~~~-~-~~~~~~~~~~~~~i~~~~~~pdg~~---lasg~~dg~i~iwd~~~~~~~~-------------~~~~~~ 212 (343)
T 3lrv_A 151 IGFQSYED-D-SQYIVHSAKSDVEYSSGVLHKDSLL---LALYSPDGILDVYNLSSPDQAS-------------SRFPVD 212 (343)
T ss_dssp EEEEESSS-S-CEEEEECCCSSCCCCEEEECTTSCE---EEEECTTSCEEEEESSCTTSCC-------------EECCCC
T ss_pred EEEEECCC-C-cEEEEEecCCCCceEEEEECCCCCE---EEEEcCCCEEEEEECCCCCCCc-------------cEEecc
Confidence 99999987 4 2222211110011125899999996 8899999999999999987320 23455
Q ss_pred eccceeEEEEcCCceEE-EEcCCcEEEEECCCCceEEEEee---ccCCe--EEEEEEecCCEEEEEeC-CCccccCcceE
Q 046773 293 FTEFVGRVRVTSHESAV-ACTSSRVITFDLRNQGMVLGERG---YGRGL--YVTSVDVNAEAYIVVEN-RELENQNRRLA 365 (453)
Q Consensus 293 h~~~v~~v~~s~~~~~v-as~d~tIrlWDl~t~~~~~~~~g---~~~~~--~v~~~~~~g~~l~s~s~-dg~~~~~~~~i 365 (453)
|.++|.+|+|+|++..+ ++++++|+|||+++++++..... |.... ...+|++++..+++++. ++ .+
T Consensus 213 h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~-------~i 285 (343)
T 3lrv_A 213 EEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN-------SL 285 (343)
T ss_dssp TTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT-------EE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCC-------cE
Confidence 88999999999987433 33466999999999876543211 11111 24678888999999888 88 99
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEee---CCCeEEEEeC-CeEEEEEC
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCM---NQGYALMCVE-GVIRVWEV 411 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~---~~~~lls~s~-~tIrlWD~ 411 (453)
+||++++....... ..+..+.+.+ +...+++++. ++++++-.
T Consensus 286 ~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 286 TIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp EEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred EEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 99999765332221 1122233333 4455555554 77777643
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-22 Score=212.47 Aligned_cols=270 Identities=14% Similarity=0.118 Sum_probs=186.5
Q ss_pred ec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEe--ecCC--
Q 046773 152 LS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVI--DDVA-- 223 (453)
Q Consensus 152 fs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~--~~~g-- 223 (453)
|+ +.++++++.|++|++||..+++++.++..++. +.+++| +++.|++++.|++|++||+ .+ +
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~---------~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~ 214 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA---------VHISRMSASGRYLLVIGRDARIDMIDLWAKE-PTK 214 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT---------EEEEEECTTSCEEEEEETTSEEEEEETTSSS-CEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc---------cceEEECCCCCEEEEECCCCeEEEEECcCCC-CcE
Confidence 55 46899999999999999999999999984332 334555 5789999999999999999 55 4
Q ss_pred cceEEeeecceecCceEEEEeC----CCceeeEEEEee-CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecc-ce
Q 046773 224 NETRTAHFGSVMDDGVLIDFTG----CSRYWVGLYAGL-AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTE-FV 297 (453)
Q Consensus 224 ~~~~~~~~~~v~~~~~~v~Fs~----dg~~~~~LaSgS-~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~-~v 297 (453)
+.++.. +. +...|+|+| ||++ |++++ .|++|+|||..+++.+.--.+.+ ..+ ....-|.+ .+
T Consensus 215 ~~~i~~--g~---~p~~va~sp~~~~dg~~---l~v~~~~~~~v~v~D~~t~~~~~~i~~~g-~~~---~~~~~~~~~~v 282 (543)
T 1nir_A 215 VAEIKI--GI---EARSVESSKFKGYEDRY---TIAGAYWPPQFAIMDGETLEPKQIVSTRG-MTV---DTQTYHPEPRV 282 (543)
T ss_dssp EEEEEC--CS---EEEEEEECCSTTCTTTE---EEEEEEESSEEEEEETTTCCEEEEEECCE-ECS---SSCCEESCCCE
T ss_pred EEEEec--CC---CcceEEeCCCcCCCCCE---EEEEEccCCeEEEEeccccccceeecccC-ccc---CccccccCCce
Confidence 222221 11 123589999 9997 66766 58999999999988432000000 000 00001323 67
Q ss_pred eEEEEcCCc-eE-EEE-cCCcEEEEECCCCceEEE-EeeccCCeEEEEEEecCCEEEEEe-CCCccccCcceEEEEEcCC
Q 046773 298 GRVRVTSHE-SA-VAC-TSSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 298 ~~v~~s~~~-~~-vas-~d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~t 372 (453)
.++.+++++ .+ ++. .+++|.+||+.+.+++.. ...++....-.+|+|+++.+++++ .++ +|+|||..+
T Consensus 283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~-------~v~v~D~~t 355 (543)
T 1nir_A 283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSN-------KVAVIDSKD 355 (543)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGT-------EEEEEETTT
T ss_pred EEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCC-------eEEEEECCC
Confidence 889999754 33 333 357999999998765442 222222223357888888766554 466 999999999
Q ss_pred CeeEEEEEe----cCCCeeEEEEeeCCCeEEE-Ee-C-CeEEEEECCC-------CeEEEEecccCCceEE--EEecCCC
Q 046773 373 FEEVCRFSL----RADRNVNVMGCMNQGYALM-CV-E-GVIRVWEVEG-------GEYMYSFRERIGEEVI--AFVGDDR 436 (453)
Q Consensus 373 g~~v~~l~~----~~~~v~~~~~~~~~~~lls-~s-~-~tIrlWD~~t-------G~~l~tL~gh~~~~V~--a~s~d~~ 436 (453)
++++..+.. |+..... .++|+++.+.+ ++ + ++|+|||+.+ ++++++|.+|.+. +. +++||++
T Consensus 356 g~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-~~~v~~~pdg~ 433 (543)
T 1nir_A 356 RRLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-SLFIKTHPKSS 433 (543)
T ss_dssp TEEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-CCCEECCTTCC
T ss_pred CeEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC-ceEEEcCCCCC
Confidence 999888864 4432222 24566565554 43 3 8999999999 8999999999766 43 7889999
Q ss_pred EEEEEe--------CCcEEEEecC
Q 046773 437 HVAASC--------GTNIHLWDFG 452 (453)
Q Consensus 437 ~lasg~--------D~~IklWDl~ 452 (453)
+|.++. |++|.|||+.
T Consensus 434 ~l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 434 HLYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp EEEECCTTCSSHHHHTCEEEEETT
T ss_pred cEEEecCCCCCcccCceEEEEECC
Confidence 998763 7799999975
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-21 Score=207.41 Aligned_cols=272 Identities=10% Similarity=0.013 Sum_probs=195.3
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEEC--CCCeEEEEecCCCCCccccccceEEEEEE------cCCeEEEEe-CCCCEE
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDL--TTRLHVRTFRPQHSDRLGQFSRAVSGIII------TDSQLIFAT-LDGDIH 215 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~--~tg~~~~tl~gh~~~~~~~~s~~V~~i~f------~g~~LasgS-~D~tIk 215 (453)
+.+++||+ ++|++++.|++|++||+ .|++++.++..+ . .+..++| +|+.|++++ .|++|.
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-~--------~p~~va~sp~~~~dg~~l~v~~~~~~~v~ 251 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-I--------EARSVESSKFKGYEDRYTIAGAYWPPQFA 251 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-S--------EEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-C--------CcceEEeCCCcCCCCCEEEEEEccCCeEE
Confidence 56888876 69999999999999999 999999999742 2 3455666 467888887 589999
Q ss_pred EEEeecCC--cceEEeeecce-----ecC--ceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceee
Q 046773 216 VAVIDDVA--NETRTAHFGSV-----MDD--GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMG 286 (453)
Q Consensus 216 vWd~~~~g--~~~~~~~~~~v-----~~~--~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~ 286 (453)
|||..+ + +.++..+...+ ..+ ...+.|+|+++. .+++.+.+++|.+||+.+++.+.
T Consensus 252 v~D~~t-~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~--~~vs~~~~g~i~vvd~~~~~~l~------------ 316 (543)
T 1nir_A 252 IMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE--FIVNVKETGKVLLVNYKDIDNLT------------ 316 (543)
T ss_dssp EEETTT-CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE--EEEEETTTTEEEEEECTTSSSCE------------
T ss_pred EEeccc-cccceeecccCcccCccccccCCceEEEEECCCCCE--EEEEECCCCeEEEEEecCCCcce------------
Confidence 999877 4 23333221100 011 124889999876 36788899999999998876211
Q ss_pred eeeeeeeccceeEEEEcCCce--EEEEc-CCcEEEEECCCCceEEEEe-e---ccCCeEEEEEEecC-CEEEEEe-CCCc
Q 046773 287 WRMLTEFTEFVGRVRVTSHES--AVACT-SSRVITFDLRNQGMVLGER-G---YGRGLYVTSVDVNA-EAYIVVE-NREL 357 (453)
Q Consensus 287 w~~l~~h~~~v~~v~~s~~~~--~vas~-d~tIrlWDl~t~~~~~~~~-g---~~~~~~v~~~~~~g-~~l~s~s-~dg~ 357 (453)
.+...+...+..+.|+|++. ++++. +++|++||+++++++.+.. + |..... .-+++++ ..+++++ .++
T Consensus 317 -~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~-~~~~p~~g~~~~s~~~~d~- 393 (543)
T 1nir_A 317 -VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA-NFVHPKYGPVWSTSHLGDG- 393 (543)
T ss_dssp -EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE-EEEETTTEEEEEEEBSSSS-
T ss_pred -eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc-ccCCCCCccEEEeccCCCc-
Confidence 00112345567789998874 44443 6899999999998776552 2 322221 2245663 3455554 456
Q ss_pred cccCcceEEEEEcCC-------CeeEEEEEecCCCeeEEEEeeCCCeEEEEe--------CCeEEEEECCCCeEE-EEe-
Q 046773 358 ENQNRRLAIVRRVDT-------FEEVCRFSLRADRNVNVMGCMNQGYALMCV--------EGVIRVWEVEGGEYM-YSF- 420 (453)
Q Consensus 358 ~~~~~~~i~Iw~~~t-------g~~v~~l~~~~~~v~~~~~~~~~~~lls~s--------~~tIrlWD~~tG~~l-~tL- 420 (453)
+|+||+.++ .++++++..++..+..+.++|+++++.+++ +++|+|||+++++++ ..|
T Consensus 394 ------~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~ 467 (543)
T 1nir_A 394 ------SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP 467 (543)
T ss_dssp ------EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred ------eEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEee
Confidence 999999998 889999999888888899999999998876 369999999999988 454
Q ss_pred -------cccCCceEE--EEecCCCEEEEE-e-----CCcEEEEecC
Q 046773 421 -------RERIGEEVI--AFVGDDRHVAAS-C-----GTNIHLWDFG 452 (453)
Q Consensus 421 -------~gh~~~~V~--a~s~d~~~lasg-~-----D~~IklWDl~ 452 (453)
..+... |+ +|+|||+.|..+ . |++|.|||..
T Consensus 468 v~~~~~~~~~~~~-~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 468 IAEWADLGEGAKR-VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp HHHHHCCCSSCCE-EEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred chhhcccCCCCCc-eEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence 344444 65 789999988644 2 7999999964
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-22 Score=201.22 Aligned_cols=258 Identities=10% Similarity=0.047 Sum_probs=179.7
Q ss_pred EEeCCCcEEEEEC--CCC--eEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEE----
Q 046773 159 CGFADGAVRLFDL--TTR--LHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRT---- 228 (453)
Q Consensus 159 SGS~D~TIrlWD~--~tg--~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~---- 228 (453)
+++.|++++||.+ +++ +.++++..+.. +.+++|+ +..+++++.|++|++||+.+ + ...+
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~~~~~~~~~i~~~d~~~-g-~~~~~~~~ 162 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTGFQ---------PKSVRFIDNTRLAIPLLEDEGMDVLDINS-G-QTVRLSPP 162 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECSSC---------BCCCEESSSSEEEEEBTTSSSEEEEETTT-C-CEEEECCC
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCCCC---------ceEEEEeCCCeEEEEeCCCCeEEEEECCC-C-eEeeecCc
Confidence 4555664555554 446 66777764321 2346665 44567778899999999987 4 1222
Q ss_pred ----eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 229 ----AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 229 ----~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
.|.+.+. .++|+|+|+. +++++.|++|++||+++++.. .++..|...+.+++|+|
T Consensus 163 ~~~~~~~~~v~----~~~~~~~~~~---~~s~~~d~~v~~~d~~~~~~~--------------~~~~~~~~~~~~~~~~~ 221 (433)
T 3bws_A 163 EKYKKKLGFVE----TISIPEHNEL---WVSQMQANAVHVFDLKTLAYK--------------ATVDLTGKWSKILLYDP 221 (433)
T ss_dssp HHHHTTCCEEE----EEEEGGGTEE---EEEEGGGTEEEEEETTTCCEE--------------EEEECSSSSEEEEEEET
T ss_pred ccccccCCcee----EEEEcCCCEE---EEEECCCCEEEEEECCCceEE--------------EEEcCCCCCeeEEEEcC
Confidence 2333332 4889999985 789999999999999998743 23456777899999998
Q ss_pred Cc--eEEEE-cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCcccc-CcceEEEEEcCCCeeEEEEE
Q 046773 305 HE--SAVAC-TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQ-NRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 305 ~~--~~vas-~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~-~~~~i~Iw~~~tg~~v~~l~ 380 (453)
++ +++++ .+++|++||+++++++.....+. .....+++++++.+++++.+..... .++.+++||..+++.+..+.
T Consensus 222 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~ 300 (433)
T 3bws_A 222 IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG 300 (433)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc
Confidence 76 33455 46899999999987655543322 2334556777888888774210000 12399999999998776653
Q ss_pred ecCCCeeEEEEeeCCCeEEEE-eC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-e-------------
Q 046773 381 LRADRNVNVMGCMNQGYALMC-VE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-C------------- 442 (453)
Q Consensus 381 ~~~~~v~~~~~~~~~~~lls~-s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~------------- 442 (453)
++..+..+.+++++++++.+ +. ++|++||+.+++++..+. +... +. +|+||+++|+++ .
T Consensus 301 -~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g 377 (433)
T 3bws_A 301 -PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDK-PNTIALSPDGKYLYVSCRGPNHPTEGYLKKG 377 (433)
T ss_dssp -EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSS-EEEEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred -CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCC-CCeEEEcCCCCEEEEEecCCCcccccccccc
Confidence 33457788999998877655 44 999999999999998886 4455 55 778999988776 4
Q ss_pred --CCcEEEEecC
Q 046773 443 --GTNIHLWDFG 452 (453)
Q Consensus 443 --D~~IklWDl~ 452 (453)
|+.|++||+.
T Consensus 378 ~~dg~v~~~d~~ 389 (433)
T 3bws_A 378 LVLGKVYVIDTT 389 (433)
T ss_dssp SSCCEEEEEETT
T ss_pred ccceEEEEEECC
Confidence 5699999974
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=193.61 Aligned_cols=197 Identities=17% Similarity=0.191 Sum_probs=149.4
Q ss_pred CCCCCCCeEEEEEEecC--C-EEEEEeCCCcEEEEECCCCeE-------EEEecCCCCCccccccceEEEEEEc---CCe
Q 046773 138 DVDNPDGLTCRCLTLSD--L-YLACGFADGAVRLFDLTTRLH-------VRTFRPQHSDRLGQFSRAVSGIIIT---DSQ 204 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~-~LaSGS~D~TIrlWD~~tg~~-------~~tl~gh~~~~~~~~s~~V~~i~f~---g~~ 204 (453)
+|..+ |++++|++ . +|++|+.|++|+|||+.++.. .+.+.+|.. .|.+++|+ +..
T Consensus 179 ~h~~~----v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~--------~v~~v~~~p~~~~~ 246 (430)
T 2xyi_A 179 GHQKE----GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA--------VVEDVAWHLLHESL 246 (430)
T ss_dssp CCSSC----CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSS--------CEEEEEECSSCTTE
T ss_pred CCCCC----eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCC--------CEeeeEEeCCCCCE
Confidence 78743 78999986 3 999999999999999998533 456666543 58889885 467
Q ss_pred EEEEeCCCCEEEEEeecCC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccC
Q 046773 205 LIFATLDGDIHVAVIDDVA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTD 280 (453)
Q Consensus 205 LasgS~D~tIkvWd~~~~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~ 280 (453)
+++++.|++|++||+.+.. ...+..|...+. .++|+|+++. .|++|+.|++|+|||+++....
T Consensus 247 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~----~i~~~p~~~~--~l~tg~~dg~v~vwd~~~~~~~------- 313 (430)
T 2xyi_A 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN----CLSFNPYSEF--ILATGSADKTVALWDLRNLKLK------- 313 (430)
T ss_dssp EEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE----EEEECSSCTT--EEEEEETTSEEEEEETTCTTSC-------
T ss_pred EEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE----EEEeCCCCCC--EEEEEeCCCeEEEEeCCCCCCC-------
Confidence 9999999999999998631 334445655443 5899999985 3789999999999999984310
Q ss_pred CcceeeeeeeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCC--------------ceEEEEeeccCCeEEEEEE
Q 046773 281 HNTVMGWRMLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQ--------------GMVLGERGYGRGLYVTSVD 343 (453)
Q Consensus 281 ~~~v~~w~~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~--------------~~~~~~~g~~~~~~v~~~~ 343 (453)
.+++.+|...|.+++|+|++ +++++.|++|+|||+.+. +++....+|...+...+++
T Consensus 314 ------~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 387 (430)
T 2xyi_A 314 ------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387 (430)
T ss_dssp ------SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC
T ss_pred ------eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC
Confidence 13466788999999999876 455567899999999872 3444445666555555566
Q ss_pred ecCC-EEEEEeCCCccccCcceEEEEEcCC
Q 046773 344 VNAE-AYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 344 ~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
+++. .+++++.|+ .++||+++.
T Consensus 388 p~~~~~l~s~s~dg-------~i~iw~~~~ 410 (430)
T 2xyi_A 388 PNEPWIICSVSEDN-------IMQVWQMAE 410 (430)
T ss_dssp SSSTTEEEEEETTS-------EEEEEEECH
T ss_pred CCCCCEEEEEECCC-------CEEEeEccc
Confidence 7777 789999999 999999875
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-19 Score=174.36 Aligned_cols=259 Identities=8% Similarity=0.030 Sum_probs=176.5
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeC-CCCEEEEEeecCCcc-eEEee
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATL-DGDIHVAVIDDVANE-TRTAH 230 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~-D~tIkvWd~~~~g~~-~~~~~ 230 (453)
..+++.+.|++|++||+++++.++++..+.. .+ +++|+ ++.|+.++. +++|.+||..+ +.. .....
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--------~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~ 80 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTLEILNQITLGYD--------FV-DTAITSDCSNVVVTSDFCQTLVQIETQL-EPPKVVAIQ 80 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECCCC--------EE-EEEECSSSCEEEEEESTTCEEEEEECSS-SSCEEEEEE
T ss_pred EEEEEecCCCeEEEEeCcccceeeeEEccCC--------cc-eEEEcCCCCEEEEEeCCCCeEEEEECCC-CceeEEecc
Confidence 3588999999999999999999888864322 23 56664 666666655 88999999987 421 22111
Q ss_pred ecceecCceE-EEEeCCCceeeEEEEeeCC-C--eEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc
Q 046773 231 FGSVMDDGVL-IDFTGCSRYWVGLYAGLAG-R--AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE 306 (453)
Q Consensus 231 ~~~v~~~~~~-v~Fs~dg~~~~~LaSgS~D-~--tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~ 306 (453)
.+ ..... ++|+|||++ |+++..+ + +|++||+++++... .+..+ .....++|+|++
T Consensus 81 ~~---~~~~~~~~~s~dg~~---l~~~~~~~~~~~i~v~d~~~~~~~~--------------~~~~~-~~~~~~~~spdg 139 (331)
T 3u4y_A 81 EG---QSSMADVDITPDDQF---AVTVTGLNHPFNMQSYSFLKNKFIS--------------TIPIP-YDAVGIAISPNG 139 (331)
T ss_dssp EC---SSCCCCEEECTTSSE---EEECCCSSSSCEEEEEETTTTEEEE--------------EEECC-TTEEEEEECTTS
T ss_pred cC---CCCccceEECCCCCE---EEEecCCCCcccEEEEECCCCCeEE--------------EEECC-CCccceEECCCC
Confidence 11 11224 899999997 4544444 3 99999999988431 12222 335789999986
Q ss_pred --eEEEEc-CCc-EEEEECCCCceEEE----EeeccCCeEEEEEEecCCEEEEEe-CCCccccCcceEEEEEcCCCee--
Q 046773 307 --SAVACT-SSR-VITFDLRNQGMVLG----ERGYGRGLYVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVDTFEE-- 375 (453)
Q Consensus 307 --~~vas~-d~t-IrlWDl~t~~~~~~----~~g~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~tg~~-- 375 (453)
+++++. ++. |++||+...+.+.. .........-.+|+++|+.++.++ .++ .+++|++.+++.
T Consensus 140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~-------~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN-------SIGILETQNPENIT 212 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT-------EEEEEECSSTTSCE
T ss_pred CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC-------eEEEEECCCCcccc
Confidence 445543 477 99999987554321 112223344456788888655544 566 999999999887
Q ss_pred -EEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeE--EEEeccc----CCce-E---EEEecCCCEEE-EE
Q 046773 376 -VCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEY--MYSFRER----IGEE-V---IAFVGDDRHVA-AS 441 (453)
Q Consensus 376 -v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~--l~tL~gh----~~~~-V---~a~s~d~~~la-sg 441 (453)
+..+... .....+.++|++++++.+.. +.|.+||+++++. +.++..+ .... . .+|+||+++|+ ++
T Consensus 213 ~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 291 (331)
T 3u4y_A 213 LLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291 (331)
T ss_dssp EEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred eeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence 7766543 44677899999998776653 8999999999987 5555433 1110 1 38899999885 44
Q ss_pred -eCCcEEEEecC
Q 046773 442 -CGTNIHLWDFG 452 (453)
Q Consensus 442 -~D~~IklWDl~ 452 (453)
.+++|+|||+.
T Consensus 292 ~~~~~v~v~d~~ 303 (331)
T 3u4y_A 292 NISRELKVFTIS 303 (331)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCcEEEEEec
Confidence 67899999985
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-20 Score=198.66 Aligned_cols=286 Identities=8% Similarity=-0.015 Sum_probs=187.3
Q ss_pred EEEEEecC--CEEEEEeC-CC-----cEEEEECCCCeEEEEecCCCCCccc--------cc--------cceEEEEEE--
Q 046773 147 CRCLTLSD--LYLACGFA-DG-----AVRLFDLTTRLHVRTFRPQHSDRLG--------QF--------SRAVSGIII-- 200 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~-D~-----TIrlWD~~tg~~~~tl~gh~~~~~~--------~~--------s~~V~~i~f-- 200 (453)
+.+++||+ ++||+++. |+ +|++||+.+|++.+.+..+....-+ .. ...|.+++|
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 67888875 69999998 88 9999999999988887643211000 00 001334455
Q ss_pred cCCeEEEEeCCCCEEEEEeecC---CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEeccc
Q 046773 201 TDSQLIFATLDGDIHVAVIDDV---ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGD 277 (453)
Q Consensus 201 ~g~~LasgS~D~tIkvWd~~~~---g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~ 277 (453)
||+.|++++. ++|++||+.+. ....+..|...+ ..++|||||++ ||.++ +++|++||+.+++...
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~----~~~~~SPDG~~---la~~~-~~~i~~~d~~~g~~~~--- 186 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFA----TDAKLSPKGGF---VSFIR-GRNLWVIDLASGRQMQ--- 186 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCE----EEEEECTTSSE---EEEEE-TTEEEEEETTTTEEEE---
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCccc----ccccCCCCCCE---EEEEe-CCcEEEEecCCCCEEE---
Confidence 5788999886 89999999873 223333343332 24899999997 56665 5699999999987321
Q ss_pred ccCCcceeeeeeeeeecc--------ceeEEEEcCCce--EEEEcCC---------------------------------
Q 046773 278 LTDHNTVMGWRMLTEFTE--------FVGRVRVTSHES--AVACTSS--------------------------------- 314 (453)
Q Consensus 278 l~~~~~v~~w~~l~~h~~--------~v~~v~~s~~~~--~vas~d~--------------------------------- 314 (453)
++..... ....++.+ .+..+.|+|++. +.++.|+
T Consensus 187 ~~~~~~~---~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 187 LTADGST---TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp CCCCCCS---SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred eccCCcc---ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 0000000 00011111 146789998874 4444443
Q ss_pred cEEEEECCC-CceEEEEee--ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC----Cee
Q 046773 315 RVITFDLRN-QGMVLGERG--YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD----RNV 387 (453)
Q Consensus 315 tIrlWDl~t-~~~~~~~~g--~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~----~v~ 387 (453)
+|++||+.+ +++.....+ |.....-.++ ++|+.++.++.+. .+++.++.+||..++++...+..+.. .+.
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~--~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR--DQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET--TSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc--cCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 788999998 875433222 3333344568 9999988776533 12344899999999987776665542 235
Q ss_pred EEEEeeCCCeEEEEeC-CeEEEEECC-CCeEEEEecccCCceEE---EEecCCCEEE-EE-eCC--cEEEEecC
Q 046773 388 NVMGCMNQGYALMCVE-GVIRVWEVE-GGEYMYSFRERIGEEVI---AFVGDDRHVA-AS-CGT--NIHLWDFG 452 (453)
Q Consensus 388 ~~~~~~~~~~lls~s~-~tIrlWD~~-tG~~l~tL~gh~~~~V~---a~s~d~~~la-sg-~D~--~IklWDl~ 452 (453)
.+.++++++.+++++. ++++||.+. +++ +..|..|... |. +|+||+++|+ ++ .|+ +++||++.
T Consensus 341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~-v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWS-VDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSC-EEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred ceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceE-EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 7889999886555555 778888765 456 8888888766 54 4899999875 45 555 89999863
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=186.80 Aligned_cols=242 Identities=10% Similarity=0.034 Sum_probs=172.9
Q ss_pred CCEEEEEeCC------CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCC---CEEEEEeecC
Q 046773 154 DLYLACGFAD------GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDG---DIHVAVIDDV 222 (453)
Q Consensus 154 ~~~LaSGS~D------~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~---tIkvWd~~~~ 222 (453)
+..||.++.+ ++|++||++ +.++++|.+|.. .|.+++|+ |+.|++++.|+ +|++||+.+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~--------~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t- 212 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQ--------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN- 212 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESS--------CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCC--------cceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-
Confidence 4566666654 799999997 456778877643 46667764 77899999986 899999987
Q ss_pred C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCC--eEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeE
Q 046773 223 A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGR--AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 223 g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~--tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
+ ...+..|.+.+ ..++|+|||+++ +++++.|+ .|.+||+++++.. .+..|...+.+
T Consensus 213 g~~~~l~~~~~~~----~~~~~spdg~~l--a~~~~~~g~~~i~~~d~~~~~~~---------------~l~~~~~~~~~ 271 (415)
T 2hqs_A 213 GAVRQVASFPRHN----GAPAFSPDGSKL--AFALSKTGSLNLYVMDLASGQIR---------------QVTDGRSNNTE 271 (415)
T ss_dssp CCEEEEECCSSCE----EEEEECTTSSEE--EEEECTTSSCEEEEEETTTCCEE---------------ECCCCSSCEEE
T ss_pred CcEEEeecCCCcc----cCEEEcCCCCEE--EEEEecCCCceEEEEECCCCCEE---------------eCcCCCCcccc
Confidence 5 33333344332 258999999972 33666665 4999999998742 24566678899
Q ss_pred EEEcCCce--EEEEcC-C--cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 300 VRVTSHES--AVACTS-S--RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 300 v~~s~~~~--~vas~d-~--tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
++|+|++. +.++.+ + .|.+||+.++++ ..+..+...+...+|+|+|+.++.++.+. .+..+.+|+.++++
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~----g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG----GQQHIAKQDLATGG 346 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECS----SCEEEEEEETTTCC
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcC----CceEEEEEECCCCC
Confidence 99999874 344543 3 588889998764 33333444444467888899888887652 12389999999987
Q ss_pred eEEEEEecCCCeeEEEEeeCCCeEEEEeC-C---eEEEEECCCCeEEEEecccCCceEE--EEecCC
Q 046773 375 EVCRFSLRADRNVNVMGCMNQGYALMCVE-G---VIRVWEVEGGEYMYSFRERIGEEVI--AFVGDD 435 (453)
Q Consensus 375 ~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~---tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~ 435 (453)
.. .+..+. .+..+.++|++++++.++. + .|++||+. |+++..|.+|.+. |. +++|-.
T Consensus 347 ~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~-v~~~~~~~~~ 409 (415)
T 2hqs_A 347 VQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQ-VKFPAWSPYL 409 (415)
T ss_dssp EE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSE-EEEEEECCCC
T ss_pred EE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCC-CcCCcccccc
Confidence 63 444443 6788999999998887765 3 89999997 6778899999888 87 566643
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-19 Score=172.86 Aligned_cols=270 Identities=7% Similarity=-0.082 Sum_probs=175.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeE-EEEeCCCCEEEEEeecCCc--ceEEe
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQL-IFATLDGDIHVAVIDDVAN--ETRTA 229 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~L-asgS~D~tIkvWd~~~~g~--~~~~~ 229 (453)
++|++++.|++|++||+.+++.++++...+.. + .+..++| +++.| ++++.+++|.+||+.+ +. ..+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG--P----TPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCT--T----CCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCC--C----CccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEc
Confidence 47899999999999999999999888632210 0 0223555 46555 5566788999999887 41 22221
Q ss_pred eecc-eecCceEEEEeCCCceeeEEEEee------------CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccc
Q 046773 230 HFGS-VMDDGVLIDFTGCSRYWVGLYAGL------------AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 230 ~~~~-v~~~~~~v~Fs~dg~~~~~LaSgS------------~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
.... .......++|+|||++ |++++ .|+.|.+||+++++... .+.. ...
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~---l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--------------~~~~-~~~ 136 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKT---LAIYESPVRLELTHFEVQPTRVALYDAETLSRRK--------------AFEA-PRQ 136 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSE---EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE--------------EEEC-CSS
T ss_pred CCcccccccccceEECCCCCE---EEEEecccccccccccccCceEEEEECCCCcEEE--------------EEeC-CCC
Confidence 1000 0001124899999986 45554 57999999999887431 1111 234
Q ss_pred eeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCcc-----------------c
Q 046773 297 VGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELE-----------------N 359 (453)
Q Consensus 297 v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~-----------------~ 359 (453)
+..++|+|++..+...++.|++||+++++.+.....+.... ...+++++..++..+..+.. .
T Consensus 137 ~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 137 ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp CCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred cceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCC-CceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 56788998875332227899999999987655442221001 12567777755433322200 0
Q ss_pred cCcceEEEEEcCCCeeEEEEEe--cCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCceEEEEecCCCE
Q 046773 360 QNRRLAIVRRVDTFEEVCRFSL--RADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRH 437 (453)
Q Consensus 360 ~~~~~i~Iw~~~tg~~v~~l~~--~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~ 437 (453)
.....+.+||..+++.. .+.. +......+.+++++++++++ +++|++||+++++.+..+..+....-.+|+||+++
T Consensus 216 ~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 293 (337)
T ss_dssp GEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCE
T ss_pred ccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCceeeEEECCCCCE
Confidence 00114688999988765 3333 33446678899999887766 69999999999999888865433312378899999
Q ss_pred EEEE-eCCcEEEEecC
Q 046773 438 VAAS-CGTNIHLWDFG 452 (453)
Q Consensus 438 lasg-~D~~IklWDl~ 452 (453)
|+++ .|+.|++||+.
T Consensus 294 l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 294 VWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEESBSSEEEEEETT
T ss_pred EEEEcCCCcEEEEECc
Confidence 9888 99999999974
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-20 Score=200.13 Aligned_cols=283 Identities=11% Similarity=0.023 Sum_probs=178.8
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCC---------CC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLD---------GD 213 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D---------~t 213 (453)
+.+++|++ ++|++ +.|++|++||+.+|++.+.+.+|....+ .|.+++| ||+.|++++.| ++
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~-----~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESL-----RAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTT-----TCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccccc-----ccceEEECCCCCEEEEEecCccceeecceee
Confidence 35677875 56666 7899999999999999988876542101 1344555 67889999875 67
Q ss_pred EEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE--e-cccccCCcceeeeee
Q 046773 214 IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF--V-GGDLTDHNTVMGWRM 289 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~--~-g~~l~~~~~v~~w~~ 289 (453)
|++||+++ + ...+....+.- .....++|||||++ ||.++. ++|++||+.+++.. . .+. ..+ .
T Consensus 93 i~~~d~~~-~~~~~l~~~~~~~-~~~~~~~~SPdG~~---la~~~~-~~i~~~~~~~g~~~~~~~~~~----~~~----~ 158 (723)
T 1xfd_A 93 YVLSKIPH-GDPQSLDPPEVSN-AKLQYAGWGPKGQQ---LIFIFE-NNIYYCAHVGKQAIRVVSTGK----EGV----I 158 (723)
T ss_dssp EEEEESSS-CCCEECCCTTCCS-CCCSBCCBCSSTTC---EEEEET-TEEEEESSSSSCCEEEECCCB----TTT----E
T ss_pred EEEEECCC-CceEeccCCcccc-ccccccEECCCCCE---EEEEEC-CeEEEEECCCCceEEEecCCC----CCc----e
Confidence 78999987 4 22222221110 00113789999997 666665 79999999998722 1 100 000 0
Q ss_pred eeeeccc---------eeEEEEcCCceE--EEEcCC----------------------------------cEEEEECCCC
Q 046773 290 LTEFTEF---------VGRVRVTSHESA--VACTSS----------------------------------RVITFDLRNQ 324 (453)
Q Consensus 290 l~~h~~~---------v~~v~~s~~~~~--vas~d~----------------------------------tIrlWDl~t~ 324 (453)
+.++.++ +.+++|+|++.. .++.+. +|++||+.++
T Consensus 159 ~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 159 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred ECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 1233332 368999998743 333322 7999999998
Q ss_pred ceEEEEeec----cCCeEE--EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec-CCCe----eEEEEee
Q 046773 325 GMVLGERGY----GRGLYV--TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR-ADRN----VNVMGCM 393 (453)
Q Consensus 325 ~~~~~~~g~----~~~~~v--~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~-~~~v----~~~~~~~ 393 (453)
++...+..+ .+...+ .+++|+|+.+++.+..+ +++..+.+||++++++...+..+ ..++ ..+.++|
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp 315 (723)
T 1xfd_A 239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA---QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK 315 (723)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT---SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT
T ss_pred ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC---CCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcC
Confidence 754444322 112334 45677777676665443 23448999999999877665443 2333 3678999
Q ss_pred CCCeEEEE-eC--C------eEEEEE-CCCCe--EEEEecccCCceE--EEEecCCCEEEEE--eC--CcEEEEecC
Q 046773 394 NQGYALMC-VE--G------VIRVWE-VEGGE--YMYSFRERIGEEV--IAFVGDDRHVAAS--CG--TNIHLWDFG 452 (453)
Q Consensus 394 ~~~~lls~-s~--~------tIrlWD-~~tG~--~l~tL~gh~~~~V--~a~s~d~~~lasg--~D--~~IklWDl~ 452 (453)
++++++.. +. + .|.+|| ..+++ ++..|..+....+ -+++||+++|+.. .| +.++||++.
T Consensus 316 dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 316 DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 99988754 32 5 577778 45555 2666764333313 2789999998754 44 889999874
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=188.87 Aligned_cols=272 Identities=9% Similarity=-0.018 Sum_probs=178.8
Q ss_pred EEEEEecCC-EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeec----
Q 046773 147 CRCLTLSDL-YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDD---- 221 (453)
Q Consensus 147 v~~lafs~~-~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~---- 221 (453)
|.+++||++ +|+.+ .|++|++||+.++++.+... +.... ..+ ++++||+.|++ +.|++|++|++.+
T Consensus 84 v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~-~~~~~-----~~~-~~SpdG~~la~-~~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 84 SFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFD-TNEET-----ASL-DFSPVGDRVAY-VRNHNLYIARGGKLGEG 154 (706)
T ss_dssp CEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEEC-CTTCC-----TTC-EECTTSSEEEE-EETTEEEEEECBCTTSC
T ss_pred ceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccC-Ccccc-----cCC-cCCCCCCEEEE-EECCeEEEEecCccccc
Confidence 689999974 55544 47999999999998765543 32211 011 24456888998 5789999999976
Q ss_pred -CCcce-EEeeecceecC----------ceEEEEeCCCceeeEEEEee--------------------------------
Q 046773 222 -VANET-RTAHFGSVMDD----------GVLIDFTGCSRYWVGLYAGL-------------------------------- 257 (453)
Q Consensus 222 -~g~~~-~~~~~~~v~~~----------~~~v~Fs~dg~~~~~LaSgS-------------------------------- 257 (453)
..... ...+...+... ...+.|||||++ |++++
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~---la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC---LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE---EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE---EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 22111 11111211100 124899999997 56666
Q ss_pred -CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcCC-----cEEEEECCCCceEEE
Q 046773 258 -AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTSS-----RVITFDLRNQGMVLG 329 (453)
Q Consensus 258 -~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~-----tIrlWDl~t~~~~~~ 329 (453)
.+.+|++||+++++...- .....|...+.+++|+|++. ++++.+. +|++||+++++++..
T Consensus 232 ~~~~~l~~~d~~~~~~~~~------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~ 299 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYL------------QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT 299 (706)
T ss_dssp CCEEEEEEEETTTTEEEEC------------CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE
T ss_pred CCeeEEEEEECCCCceEee------------ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE
Confidence 457899999999884210 00113456788999999884 3444443 899999999844433
Q ss_pred E-e-eccCC---eEEEEEEe--cCCEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCCCeeE-EEEeeCCCeEEE
Q 046773 330 E-R-GYGRG---LYVTSVDV--NAEAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVN-VMGCMNQGYALM 400 (453)
Q Consensus 330 ~-~-g~~~~---~~v~~~~~--~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~-~~~~~~~~~lls 400 (453)
. . .+... ....+|++ +|+.+++++.++ .++||+++ +++.+..++.+...+.. +.++++++.++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g-------~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~ 372 (706)
T 2z3z_A 300 LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG-------WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYF 372 (706)
T ss_dssp EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS-------SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEE
T ss_pred EEEccCCCeECccCCceeecCCCCEEEEEEccCC-------ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEE
Confidence 2 1 11111 01246788 888787777777 89999887 66777777666555665 688899988876
Q ss_pred EeC--C----eEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eC----CcEEEEecC
Q 046773 401 CVE--G----VIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CG----TNIHLWDFG 452 (453)
Q Consensus 401 ~s~--~----tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D----~~IklWDl~ 452 (453)
++. + .|..||+.+++ +..|. |... +. +|+||+++|+.. .+ +.|++||+.
T Consensus 373 ~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~-~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 373 ESTEASPLERHFYCIDIKGGK-TKDLT-PESG-MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EESSSCTTCBEEEEEETTCCC-CEESC-CSSS-EEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred EecCCCCceEEEEEEEcCCCC-ceecc-CCCc-eEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 654 4 67777888876 45554 5555 55 788999988765 43 469999974
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-18 Score=197.67 Aligned_cols=268 Identities=13% Similarity=0.050 Sum_probs=196.2
Q ss_pred CCCCCCCeEEEEEEecCC-EEEEEeCCCcEEEEECCC-CeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEE
Q 046773 138 DVDNPDGLTCRCLTLSDL-YLACGFADGAVRLFDLTT-RLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIH 215 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~~-~LaSGS~D~TIrlWD~~t-g~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIk 215 (453)
+|.. . +.+++|+++ ++++++.|++++||++.. +...+.+.+|... ...+++++|+.|++++ |++|+
T Consensus 201 ~~~~--~--v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~-------~~~~~SpDG~~la~~~-~~~i~ 268 (1045)
T 1k32_A 201 DMST--H--VSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDY-------YPRHLNTDGRRILFSK-GGSIY 268 (1045)
T ss_dssp CCSS--C--CEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSS-------CEEEEEESSSCEEEEE-TTEEE
T ss_pred CCCC--c--ccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCc-------ceeeEcCCCCEEEEEe-CCEEE
Confidence 6763 3 689999987 456778899999998764 5566777754421 2335778899999874 89999
Q ss_pred EEEeecCCcceEEe-----------eecceecCceEEEEe-CCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 216 VAVIDDVANETRTA-----------HFGSVMDDGVLIDFT-GCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 216 vWd~~~~g~~~~~~-----------~~~~v~~~~~~v~Fs-~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
+||++...+..+.. |...+ ..++|| |||++ |++++ +++|.+||+.+++...
T Consensus 269 ~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v----~~~~~S~pdG~~---la~~~-~~~i~~~~~~~~~~~~--------- 331 (1045)
T 1k32_A 269 IFNPDTEKIEKIEIGDLESPEDRIISIPSK----FAEDFSPLDGDL---IAFVS-RGQAFIQDVSGTYVLK--------- 331 (1045)
T ss_dssp EECTTTCCEEECCCCCCCBCCSEEEECGGG----GEEEEEECGGGC---EEEEE-TTEEEEECTTSSBEEE---------
T ss_pred EecCCceEeeeeccCccccccccccccccc----ceeeecCCCCCE---EEEEE-cCEEEEEcCCCCceEE---------
Confidence 99984411111111 11111 258999 99997 55666 7899999999887321
Q ss_pred eeeeeeeeeecc-ceeEEEEcCCc--eEEEEcCCcEE-EEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccc
Q 046773 284 VMGWRMLTEFTE-FVGRVRVTSHE--SAVACTSSRVI-TFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELEN 359 (453)
Q Consensus 284 v~~w~~l~~h~~-~v~~v~~s~~~--~~vas~d~tIr-lWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~ 359 (453)
+..|.. .+..++|+ ++ ++.++.+..+. +||+.+++. ..+.+|.......+++|+|+.+++++.++
T Consensus 332 ------~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~--- 400 (1045)
T 1k32_A 332 ------VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRF--- 400 (1045)
T ss_dssp ------CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTS---
T ss_pred ------ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc-eEecCCccceeeeEECCCCCEEEEECCCC---
Confidence 334444 67778888 66 34445556788 889988654 33335545556677889999999999888
Q ss_pred cCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-C----------eEEEEECCCCeEEEEecccCCceE
Q 046773 360 QNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-G----------VIRVWEVEGGEYMYSFRERIGEEV 428 (453)
Q Consensus 360 ~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~----------tIrlWD~~tG~~l~tL~gh~~~~V 428 (453)
++++||+++++....+..+...+..+.++|++++++.++. + +|++||+.+++ +..+.+|... +
T Consensus 401 ----~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~-~ 474 (1045)
T 1k32_A 401 ----EIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSH-D 474 (1045)
T ss_dssp ----EEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSB-E
T ss_pred ----eEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcc-c
Confidence 9999999999887777677777888999999999887654 3 99999999998 7788888776 5
Q ss_pred E--EEecCCCEEEEE-eCCcEEEEec
Q 046773 429 I--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 429 ~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
. +|+|||++|+.+ .++..++|+.
T Consensus 475 ~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 475 YAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp EEEEECTTSCEEEEEESCCCCCEECS
T ss_pred CCceEcCCCCEEEEEecccCCcCcch
Confidence 5 789999999888 7788888874
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=184.46 Aligned_cols=259 Identities=9% Similarity=-0.029 Sum_probs=170.7
Q ss_pred EEEEEec--CCEEEEEeC-CCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeE-EEEeC---CCCEEEEEe
Q 046773 147 CRCLTLS--DLYLACGFA-DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQL-IFATL---DGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs--~~~LaSGS~-D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~L-asgS~---D~tIkvWd~ 219 (453)
|++++|+ +++||++|. |++++||++++|++.+ +..|+. ..|.+++|+++++ ++++. +...+||.+
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~-------~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPI-------NSVLDPHYGVGRVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCC-------SEECEECTTCSEEEEEEECSTTSCCEEEEEE
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccc-------cccccccCCCCeEEEEeccCCCCcceEEEEE
Confidence 6777775 579999887 9999999998887654 444432 1466677876554 44554 466788877
Q ss_pred ec--CC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccc
Q 046773 220 DD--VA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 220 ~~--~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
+. .| ...+....+. ...+|+|||+.+ .+++++.|+++ |||+++++.. .+..+..
T Consensus 96 ~~~~~g~~~~l~~~~~~-----~~~~~s~dg~~~-~~~s~~~~~~~-l~d~~~g~~~---------------~l~~~~~- 152 (582)
T 3o4h_A 96 NTSRPGEEQRLEAVKPM-----RILSGVDTGEAV-VFTGATEDRVA-LYALDGGGLR---------------ELARLPG- 152 (582)
T ss_dssp ETTSTTCCEECTTSCSB-----EEEEEEECSSCE-EEEEECSSCEE-EEEEETTEEE---------------EEEEESS-
T ss_pred eccCCCccccccCCCCc-----eeeeeCCCCCeE-EEEecCCCCce-EEEccCCcEE---------------EeecCCC-
Confidence 65 34 1211111111 135888998764 36677777666 9999998732 1222323
Q ss_pred eeEEEEcCCceEEE--EcC----CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEc
Q 046773 297 VGRVRVTSHESAVA--CTS----SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 297 v~~v~~s~~~~~va--s~d----~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
.+++|+|++..++ +.+ .+|++||+++++.. ++.++.....-.+|+|+|+.+++.+.++ ..+|.+||+
T Consensus 153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~-----~~~i~~~d~ 225 (582)
T 3o4h_A 153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAR-----EARLVTVDP 225 (582)
T ss_dssp -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSS-----CEEEEEECT
T ss_pred -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCC-----eeEEEEEcC
Confidence 6788988775433 444 57999999988653 4444544445567888999988655555 127888899
Q ss_pred CCCeeEEEEEecCCCeeEEE--------EeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEE
Q 046773 371 DTFEEVCRFSLRADRNVNVM--------GCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVA 439 (453)
Q Consensus 371 ~tg~~v~~l~~~~~~v~~~~--------~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~la 439 (453)
++++.. .+..+...+..+. ++||+..+++++. ++++||++ |+++.++. +. |. +|+ |+++++
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~~---~~-v~~~~~s-dg~~l~ 297 (582)
T 3o4h_A 226 RDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAPQ---GN-HGRVVLW-RGKLVT 297 (582)
T ss_dssp TTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCCS---SE-EEEEEEE-TTEEEE
T ss_pred CCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccCC---Cc-eEEEEec-CCEEEE
Confidence 888776 5555544455566 8999854445554 99999999 88876443 44 55 677 888888
Q ss_pred EE-eCC---cEEEEec
Q 046773 440 AS-CGT---NIHLWDF 451 (453)
Q Consensus 440 sg-~D~---~IklWDl 451 (453)
++ .+. .|.+||+
T Consensus 298 ~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 298 SHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEETTEEEEEEEETT
T ss_pred EEcCCCCCCeEEEEcC
Confidence 77 664 3666664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-17 Score=159.08 Aligned_cols=257 Identities=11% Similarity=0.066 Sum_probs=175.8
Q ss_pred EEEEEecC--CEEEEEeC-------CCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE--EcCCeE-EEEeCCCCE
Q 046773 147 CRCLTLSD--LYLACGFA-------DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII--ITDSQL-IFATLDGDI 214 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~-------D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~--f~g~~L-asgS~D~tI 214 (453)
+..++|++ ++|+.++. +++|.+||+.+++.++++..... +.+++ .+++.+ ++.+.+++|
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---------~~~~~~s~dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK---------PFGATINNTTQTLWFGNTVNSAV 113 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC---------CCSEEEETTTTEEEEEETTTTEE
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC---------cceEEECCCCCEEEEEecCCCEE
Confidence 57888886 57776664 57899999999999988864221 12244 456755 455668999
Q ss_pred EEEEeecCC--cceEEeeeccee-----cCceEEEEeCCCceeeEEEEe--eCCCeEEEeeCCCCcEEecccccCCccee
Q 046773 215 HVAVIDDVA--NETRTAHFGSVM-----DDGVLIDFTGCSRYWVGLYAG--LAGRAFHIWDRQAEEVFVGGDLTDHNTVM 285 (453)
Q Consensus 215 kvWd~~~~g--~~~~~~~~~~v~-----~~~~~v~Fs~dg~~~~~LaSg--S~D~tIrvWD~~tg~~~~g~~l~~~~~v~ 285 (453)
.+||.++ + ...+..+.+... .....++|+|||++ |+.+ +.+++|.+||+++++...
T Consensus 114 ~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~---l~~~~~~~~~~i~~~d~~~~~~~~----------- 178 (353)
T 3vgz_A 114 TAIDAKT-GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT---VYISGIGKESVIWVVDGGNIKLKT----------- 178 (353)
T ss_dssp EEEETTT-CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE---EEEEEESSSCEEEEEETTTTEEEE-----------
T ss_pred EEEeCCC-CeeEEEEecCCCccccccCCCCCceEEECCCCCE---EEEEecCCCceEEEEcCCCCceEE-----------
Confidence 9999887 4 222222211100 00124899999996 3333 358899999999988431
Q ss_pred eeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEe----eccCCeEEEEEEecCCEEEEEeCC-Ccc
Q 046773 286 GWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGER----GYGRGLYVTSVDVNAEAYIVVENR-ELE 358 (453)
Q Consensus 286 ~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~----g~~~~~~v~~~~~~g~~l~s~s~d-g~~ 358 (453)
.+..+...+..+.|+|++ +++++.++.|.+||+++++.+.... ++.+...-.+++++++.++.++.+ +
T Consensus 179 ---~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-- 253 (353)
T 3vgz_A 179 ---AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA-- 253 (353)
T ss_dssp ---EECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS--
T ss_pred ---EecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC--
Confidence 122223346678888776 4555567899999999987665542 123333345788889877666544 5
Q ss_pred ccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCCeEEEEecccCCceEE--EEecC
Q 046773 359 NQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGD 434 (453)
Q Consensus 359 ~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d 434 (453)
.+.+||..+++.+..+.... ...+.+++++++++.+. . ++|.+||+.+++.+..+..+. . +. +|+||
T Consensus 254 -----~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~~s~d 324 (353)
T 3vgz_A 254 -----EVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-H-PNSLALSAD 324 (353)
T ss_dssp -----EEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-E-EEEEEECTT
T ss_pred -----EEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-C-CCeEEEcCC
Confidence 99999999998887776543 35688899998776655 3 999999999999998887544 3 34 78899
Q ss_pred CCEEEEE
Q 046773 435 DRHVAAS 441 (453)
Q Consensus 435 ~~~lasg 441 (453)
+++|..+
T Consensus 325 g~~l~v~ 331 (353)
T 3vgz_A 325 GKTLYVS 331 (353)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 9976544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-17 Score=159.56 Aligned_cols=263 Identities=9% Similarity=0.033 Sum_probs=164.5
Q ss_pred EEEEEeCCCcEEEEECC-CC--eEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCC-CCEEEEEee--cCC-cce
Q 046773 156 YLACGFADGAVRLFDLT-TR--LHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLD-GDIHVAVID--DVA-NET 226 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~-tg--~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D-~tIkvWd~~--~~g-~~~ 226 (453)
.+++++.|++|++||+. ++ +.+.++. |.. .+.+++| +++.|++++.+ ++|++|+++ + + ...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~-~~~~~ 76 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPG--------QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-GALTF 76 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSS--------CCCCEEECTTSSEEEEEETTTTEEEEEEECTTT-CCEEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEe-cCC--------CCceEEECCCCCEEEEeecCCCeEEEEEecCCC-Cceee
Confidence 45666889999999995 45 3444443 222 2344666 46778888886 899999998 3 3 222
Q ss_pred EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc
Q 046773 227 RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE 306 (453)
Q Consensus 227 ~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~ 306 (453)
+...... .....++|+|+|+++ ++++..|++|++||+.+++...- ...+..+ ..+.+++|+|++
T Consensus 77 ~~~~~~~--~~~~~~~~s~dg~~l--~~~~~~~~~i~~~d~~~~~~~~~-----------~~~~~~~-~~~~~~~~s~dg 140 (343)
T 1ri6_A 77 AAESALP--GSLTHISTDHQGQFV--FVGSYNAGNVSVTRLEDGLPVGV-----------VDVVEGL-DGCHSANISPDN 140 (343)
T ss_dssp EEEEECS--SCCSEEEECTTSSEE--EEEETTTTEEEEEEEETTEEEEE-----------EEEECCC-TTBCCCEECTTS
T ss_pred ccccccC--CCCcEEEEcCCCCEE--EEEecCCCeEEEEECCCCccccc-----------cccccCC-CCceEEEECCCC
Confidence 2211110 112358999999962 34445589999999954431100 0112222 346778999876
Q ss_pred --eEEEE-cCCcEEEEECCC-CceEE----EEee-ccCCeEEEEEEecCCEEEEEe-CCCccccCcceEEEEEcCC--Ce
Q 046773 307 --SAVAC-TSSRVITFDLRN-QGMVL----GERG-YGRGLYVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVDT--FE 374 (453)
Q Consensus 307 --~~vas-~d~tIrlWDl~t-~~~~~----~~~g-~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~t--g~ 374 (453)
+++++ .+++|++||+.+ ++... .... ........+++++++.++.++ .++ .++||+++. ++
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~-------~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS-------SVDVWELKDPHGN 213 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT-------EEEEEESSCTTSC
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC-------EEEEEEecCCCCc
Confidence 44555 568999999998 54321 1111 122333456778888665554 566 999999953 43
Q ss_pred e--EEEEEecC------CCeeEEEEeeCCCeEEEEe-C-CeEEEEECC--CC--eEEEEecccCCceEEEEecCCCEEEE
Q 046773 375 E--VCRFSLRA------DRNVNVMGCMNQGYALMCV-E-GVIRVWEVE--GG--EYMYSFRERIGEEVIAFVGDDRHVAA 440 (453)
Q Consensus 375 ~--v~~l~~~~------~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~--tG--~~l~tL~gh~~~~V~a~s~d~~~las 440 (453)
. +..+...+ .....+.+++++++++++. . ++|++||+. ++ +.+..+..+....-.+|+||+++|+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA 293 (343)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEE
T ss_pred EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEE
Confidence 2 33332112 1344688999998887555 3 999999998 33 55656654433212278999998776
Q ss_pred E--eCCcEEEEec
Q 046773 441 S--CGTNIHLWDF 451 (453)
Q Consensus 441 g--~D~~IklWDl 451 (453)
+ .|+.|.||++
T Consensus 294 ~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 294 AGQKSHHISVYEI 306 (343)
T ss_dssp ECTTTCEEEEEEE
T ss_pred ecCCCCeEEEEEE
Confidence 6 6899999965
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-18 Score=187.38 Aligned_cols=267 Identities=9% Similarity=0.019 Sum_probs=180.1
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe--EEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL--HVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~ 220 (453)
+.+++||+ ++|++++. ++|++||+.+++ .++.+..|.. .+..++| ||+.|++++ +++|++||+.
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~--------~~~~~~~SPDG~~la~~~-~~~i~~~d~~ 180 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEG--------FATDAKLSPKGGFVSFIR-GRNLWVIDLA 180 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSS--------CEEEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCc--------ccccccCCCCCCEEEEEe-CCcEEEEecC
Confidence 45778875 68999886 999999999993 3455665432 3555665 577899987 5689999988
Q ss_pred cCCcceEEe---eecceecC------------ceEEEEeCCCceeeEEEEeeCCC-------------------------
Q 046773 221 DVANETRTA---HFGSVMDD------------GVLIDFTGCSRYWVGLYAGLAGR------------------------- 260 (453)
Q Consensus 221 ~~g~~~~~~---~~~~v~~~------------~~~v~Fs~dg~~~~~LaSgS~D~------------------------- 260 (453)
+ + ...+. +...+... ...++|||||++ |++++.|+
T Consensus 181 ~-g-~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~---l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 181 S-G-RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA---IAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp T-T-EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC---EEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred C-C-CEEEeccCCccceeccccceeeeeccccccceEECCCCCE---EEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 7 4 12111 11111000 124899999997 66776665
Q ss_pred --------eEEEeeCCC-CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceE--EEEc-----CCcEEEEECCCC
Q 046773 261 --------AFHIWDRQA-EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESA--VACT-----SSRVITFDLRNQ 324 (453)
Q Consensus 261 --------tIrvWD~~t-g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~--vas~-----d~tIrlWDl~t~ 324 (453)
+|.+||+++ ++...- .....|...+.+++| |++.. +++. +.+|++||++++
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~------------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWI------------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEE------------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred CCCCCCeeEEEEEECCCCCceEEe------------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence 889999998 873210 000135567888999 88743 3332 257999999998
Q ss_pred ceEEEEeeccC----CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCCCeeEE-EEeeCCCeE
Q 046773 325 GMVLGERGYGR----GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVNV-MGCMNQGYA 398 (453)
Q Consensus 325 ~~~~~~~g~~~----~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~~-~~~~~~~~l 398 (453)
++......+.. .....+|+++|+.+++++.++ .++||.++ +++ +..++.+...+..+ .++++++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g-------~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l 394 (741)
T 2ecf_A 323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTG-------FQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLA 394 (741)
T ss_dssp CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTS-------SCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEE
T ss_pred ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCC-------ccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEE
Confidence 76554433321 111357888998778877777 88999887 445 66666666557676 489999888
Q ss_pred EEEeC--C--eEEEEECCC-CeEEEEecccCCceEE--EEecCCCEEEEE-eC----CcEEEEec
Q 046773 399 LMCVE--G--VIRVWEVEG-GEYMYSFRERIGEEVI--AFVGDDRHVAAS-CG----TNIHLWDF 451 (453)
Q Consensus 399 ls~s~--~--tIrlWD~~t-G~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D----~~IklWDl 451 (453)
+.++. + +++||++.. |+++..|.+ .+. +. +|+||+++|+.. .+ ..+.+||.
T Consensus 395 ~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~-~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 395 YFRAGIESARESQIYAVPLQGGQPQRLSK-APG-MHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp EEEECSSCTTCBEEEEEETTCCCCEECCC-SCS-EEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred EEEEeCCCCceEEEEEEEcCCCCeeeccc-CCC-ceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 75554 3 999999975 777788876 444 44 789999988755 32 46778875
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=158.04 Aligned_cols=242 Identities=8% Similarity=-0.035 Sum_probs=161.4
Q ss_pred EEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeec-CCc-ceEEeee-c
Q 046773 158 ACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDD-VAN-ETRTAHF-G 232 (453)
Q Consensus 158 aSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~-~g~-~~~~~~~-~ 232 (453)
.+++.|++|++||+.+++....+ .|.. .|.+++|+ ++.|++++ ++.|++||+++ ... .....+. .
T Consensus 16 ~~~~~~~~i~~~d~~~~~~~~~~-~~~~--------~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~ 85 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRKMRVVW-QTPE--------LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATI 85 (297)
T ss_dssp --CCCCEEEEEEETTTTEEEEEE-EESS--------CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCC
T ss_pred CCCCcceeEEEEeCCCCceeeec-cCCc--------ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccc
Confidence 35678999999999999976544 3432 46667765 67888876 88999999876 221 1111221 1
Q ss_pred ceecCceEEEEeCCCceeeEEEEee--CCCeEEEeeC--CCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce-
Q 046773 233 SVMDDGVLIDFTGCSRYWVGLYAGL--AGRAFHIWDR--QAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES- 307 (453)
Q Consensus 233 ~v~~~~~~v~Fs~dg~~~~~LaSgS--~D~tIrvWD~--~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~- 307 (453)
.+ ..++|+|||++ |++++ .|+.++||++ .+++.. .+..+ ..+..++++|++.
T Consensus 86 ~~----~~~~~spdg~~---l~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~~-~~~~~~~~spdg~~ 142 (297)
T 2ojh_A 86 CN----NDHGISPDGAL---YAISDKVEFGKSAIYLLPSTGGTPR---------------LMTKN-LPSYWHGWSPDGKS 142 (297)
T ss_dssp BC----SCCEECTTSSE---EEEEECTTTSSCEEEEEETTCCCCE---------------ECCSS-SSEEEEEECTTSSE
T ss_pred cc----cceEECCCCCE---EEEEEeCCCCcceEEEEECCCCceE---------------EeecC-CCccceEECCCCCE
Confidence 11 13799999997 66666 4456666654 455421 12222 3477889998774
Q ss_pred -E-EEEcCCcEEEEEC--CCCceEEEEeeccCCeEEEEEEecCCEEEEEeC-CCccccCcceEEEEEcC-CCeeEEEEEe
Q 046773 308 -A-VACTSSRVITFDL--RNQGMVLGERGYGRGLYVTSVDVNAEAYIVVEN-RELENQNRRLAIVRRVD-TFEEVCRFSL 381 (453)
Q Consensus 308 -~-vas~d~tIrlWDl--~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~-dg~~~~~~~~i~Iw~~~-tg~~v~~l~~ 381 (453)
+ +++.+++++||++ .++. ...+..+.......+++++++.++.++. ++ .++||+++ .+..+..+..
T Consensus 143 l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-------~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 143 FTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG-------QMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp EEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTS-------SCEEEEEETTSSCEEECCC
T ss_pred EEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCC-------CccEEEECCCCCCcEEEec
Confidence 3 3345788999985 4433 3333334444555667788887776664 67 88999887 4556666665
Q ss_pred cCCCeeEEEEeeCCCeEEEEeC------------CeEEEEECCCCeE--EEEecccCCceEE--EEecCCCEEEEE
Q 046773 382 RADRNVNVMGCMNQGYALMCVE------------GVIRVWEVEGGEY--MYSFRERIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 382 ~~~~v~~~~~~~~~~~lls~s~------------~tIrlWD~~tG~~--l~tL~gh~~~~V~--a~s~d~~~lasg 441 (453)
+...+..+.+++++++++.++. ..|.+||+++++. +..+.+|... +. +|+||+++|+++
T Consensus 215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~ 289 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGT-MNSPNWSPDGDEFAYV 289 (297)
T ss_dssp CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTT-SCSCCBCTTSSEEEEE
T ss_pred CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcc-cccceECCCCCEEEEE
Confidence 5555777889999998876653 4699999999865 5556677766 65 788999998876
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-18 Score=184.28 Aligned_cols=287 Identities=10% Similarity=-0.053 Sum_probs=170.4
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCeEE-EEecCCCCCc--cc-------cccceEEEEEEcCC-eEEEEeCCCCEEEEE
Q 046773 150 LTLSDLYLACGFADGAVRLFDLTTRLHV-RTFRPQHSDR--LG-------QFSRAVSGIIITDS-QLIFATLDGDIHVAV 218 (453)
Q Consensus 150 lafs~~~LaSGS~D~TIrlWD~~tg~~~-~tl~gh~~~~--~~-------~~s~~V~~i~f~g~-~LasgS~D~tIkvWd 218 (453)
+++.++.+++++.|+ | +||+.||+.+ +++..|.... +. .....|.+++|+++ .++. +.|++|++||
T Consensus 31 ~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~-~~~~~i~~~d 107 (706)
T 2z3z_A 31 LQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVL-FTQGGLVGFD 107 (706)
T ss_dssp CEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEE-EETTEEEEEE
T ss_pred CcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEE-EECCEEEEEE
Confidence 444477888888888 8 9999999984 5554432100 00 00024677888754 4444 4679999999
Q ss_pred eecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC-----CcEEecccccCCcceeeeeeeee
Q 046773 219 IDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA-----EEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 219 ~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t-----g~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
+.+ + ...+..+...+. .++|||||++ ||+ +.|++|+|||+.+ ++...--.........+....+.
T Consensus 108 ~~~-~~~~~l~~~~~~~~----~~~~SpdG~~---la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 108 MLA-RKVTYLFDTNEETA----SLDFSPVGDR---VAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp TTT-TEEEEEECCTTCCT----TCEECTTSSE---EEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred CCC-CceEEccCCccccc----CCcCCCCCCE---EEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 987 4 222332322221 3799999997 555 4689999999998 76321000000000000000111
Q ss_pred eccceeEEEEcCCceE--EEE---------------------------------cCCcEEEEECCCCceEEEEe--eccC
Q 046773 293 FTEFVGRVRVTSHESA--VAC---------------------------------TSSRVITFDLRNQGMVLGER--GYGR 335 (453)
Q Consensus 293 h~~~v~~v~~s~~~~~--vas---------------------------------~d~tIrlWDl~t~~~~~~~~--g~~~ 335 (453)
+...+.++.|+|++.. +++ .+.+|++||+++++...... .+..
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 258 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK 258 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence 2233578999998853 334 12569999999976533322 2322
Q ss_pred CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-e-cCCC---eeEEEEee--CCCeEEEEeC-CeEE
Q 046773 336 GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-L-RADR---NVNVMGCM--NQGYALMCVE-GVIR 407 (453)
Q Consensus 336 ~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-~-~~~~---v~~~~~~~--~~~~lls~s~-~tIr 407 (453)
.....+++|+|+.+++++.+. .++..++.+||.++++.+..+. . +..+ +..+.+++ +++++++++. ++++
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~--~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNR--AQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECT--TSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred eEeeEEEECCCCEEEEEEeCC--CCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 233455677888888877654 2234488999999984444432 2 2222 25678898 8876665555 8899
Q ss_pred EEECC-CCeEEEEecccCCceEE---EEecCCCEEEEE--eCC----cEEEEec
Q 046773 408 VWEVE-GGEYMYSFRERIGEEVI---AFVGDDRHVAAS--CGT----NIHLWDF 451 (453)
Q Consensus 408 lWD~~-tG~~l~tL~gh~~~~V~---a~s~d~~~lasg--~D~----~IklWDl 451 (453)
||++. +++++..|.+|... |. +|+||++.|+.+ .++ .|..||+
T Consensus 337 l~~~~~~~~~~~~l~~~~~~-v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWE-VTNFAGFDPKGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp EEEEETTSCEEEECCCSSSC-EEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred EEEEECCCCEEEecCCCCeE-EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence 99886 78888999888766 53 688999987644 444 4555554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-16 Score=182.23 Aligned_cols=280 Identities=12% Similarity=0.022 Sum_probs=185.1
Q ss_pred EEEEecC--CEEEEEeCC------CcEEEEECCCCeEEEEecCCCCCc-------------------c------------
Q 046773 148 RCLTLSD--LYLACGFAD------GAVRLFDLTTRLHVRTFRPQHSDR-------------------L------------ 188 (453)
Q Consensus 148 ~~lafs~--~~LaSGS~D------~TIrlWD~~tg~~~~tl~gh~~~~-------------------~------------ 188 (453)
.+++||+ +++++++.| ..|.+||+.++++.+ +..++... +
T Consensus 110 ~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw 188 (1045)
T 1k32_A 110 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW 188 (1045)
T ss_dssp EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred ccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence 7889985 578888865 468888898887643 32221100 0
Q ss_pred -----------ccccceEEEEEEcCCeEE-EEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEE
Q 046773 189 -----------GQFSRAVSGIIITDSQLI-FATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLY 254 (453)
Q Consensus 189 -----------~~~s~~V~~i~f~g~~La-sgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~La 254 (453)
..+...+.+++|+++.++ +++.|++++||.++..+ ...+..|.. + ..++|+|||++ |+
T Consensus 189 ~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~----~~~~~SpDG~~---la 260 (1045)
T 1k32_A 189 IEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-Y----YPRHLNTDGRR---IL 260 (1045)
T ss_dssp EEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCS-S----CEEEEEESSSC---EE
T ss_pred EECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCC-c----ceeeEcCCCCE---EE
Confidence 001123455677776654 56778999999987533 233333321 1 24699999997 55
Q ss_pred EeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc-CCce-EEEEcCCcEEEEECCCCceEEEEee
Q 046773 255 AGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT-SHES-AVACTSSRVITFDLRNQGMVLGERG 332 (453)
Q Consensus 255 SgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s-~~~~-~vas~d~tIrlWDl~t~~~~~~~~g 332 (453)
.+ .|++|.+||+.+++... +..+..... .....|...+.+++|+ |++. ++.+.++.|.+||+.++.. ..+..
T Consensus 261 ~~-~~~~i~~~d~~~~~l~~---l~~~~~~~~-~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~-~~~~~ 334 (1045)
T 1k32_A 261 FS-KGGSIYIFNPDTEKIEK---IEIGDLESP-EDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYV-LKVPE 334 (1045)
T ss_dssp EE-ETTEEEEECTTTCCEEE---CCCCCCCBC-CSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBE-EECSC
T ss_pred EE-eCCEEEEecCCceEeee---eccCccccc-ccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCce-EEccC
Confidence 55 48999999996555321 111100000 0122456678899999 9875 3334478999999998753 33333
Q ss_pred ccC-CeEEEEEEecCCEEEEEeCCCccccCcceEE-EEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEE
Q 046773 333 YGR-GLYVTSVDVNAEAYIVVENRELENQNRRLAI-VRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVW 409 (453)
Q Consensus 333 ~~~-~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~-Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlW 409 (453)
+.. .....+|+ +|+.++.++.+. .+. +|+.++++.. .+..+...+..+.++|+++++++++. ++|++|
T Consensus 335 ~~~~~~~~~~~s-dg~~l~~~s~~~-------~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 335 PLRIRYVRRGGD-TKVAFIHGTREG-------DFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp CSCEEEEEECSS-SEEEEEEEETTE-------EEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCcceEEeeeEc-CCCeEEEEECCC-------ceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 332 22233445 566788777755 777 8888877543 34455566888999999999988877 999999
Q ss_pred ECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCC----------cEEEEecC
Q 046773 410 EVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGT----------NIHLWDFG 452 (453)
Q Consensus 410 D~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~----------~IklWDl~ 452 (453)
|+++|++...+.+|.+. |. +|+|||++|+++ .++ .|+|||+.
T Consensus 406 d~~tg~~~~~~~~~~~~-v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 406 DLETGKPTVIERSREAM-ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp ETTTCCEEEEEECSSSC-CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred ECCCCceEEeccCCCCC-ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 99999998888788776 55 789999999877 543 89999974
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-16 Score=155.35 Aligned_cols=236 Identities=9% Similarity=0.036 Sum_probs=158.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeE-EEEeCCCCEEEEEeecCCcceEEee
Q 046773 154 DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQL-IFATLDGDIHVAVIDDVANETRTAH 230 (453)
Q Consensus 154 ~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~L-asgS~D~tIkvWd~~~~g~~~~~~~ 230 (453)
+.++++++.|++|++||+.+++.++++..+.. + .+..++| +++.+ ++++.+++|.+||+.+ +.......
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--~-----~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~ 82 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--F-----GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHAN 82 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSC--C-----SSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCC--C-----CCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEE
Confidence 46899999999999999999999998874331 0 1233555 46655 4556789999999887 41111111
Q ss_pred ecce----ecCceEEEEeCCCceeeEEEEeeCC------------CeEEEeeCCCCcEEecccccCCcceeeeeeeeeec
Q 046773 231 FGSV----MDDGVLIDFTGCSRYWVGLYAGLAG------------RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT 294 (453)
Q Consensus 231 ~~~v----~~~~~~v~Fs~dg~~~~~LaSgS~D------------~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~ 294 (453)
.... ......++|+|||++ |++++.| ++|.+||+++++... . ...+ .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~---l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--------~---~~~~-~~~ 147 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKE---VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK--------P---VRTF-PMP 147 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSE---EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--------C---SEEE-ECC
T ss_pred cccccccccccccceEECCCCCE---EEEEcccccccccccccCCCeEEEEECCCccccc--------e---eeec-cCC
Confidence 1110 001124899999997 5666654 899999999865210 0 0111 122
Q ss_pred cceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeecc----------------------------------------
Q 046773 295 EFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYG---------------------------------------- 334 (453)
Q Consensus 295 ~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~---------------------------------------- 334 (453)
..+.+++|+|++.+.++ +..|++||+++++.+.....+.
T Consensus 148 ~~~~~~~~s~dg~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 226 (349)
T 1jmx_B 148 RQVYLMRAADDGSLYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 226 (349)
T ss_dssp SSCCCEEECTTSCEEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred CcccceeECCCCcEEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence 34677889988764443 4459999999987655432111
Q ss_pred ----------------------------CCeEEEEEEe-cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC
Q 046773 335 ----------------------------RGLYVTSVDV-NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR 385 (453)
Q Consensus 335 ----------------------------~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~ 385 (453)
......++++ +++.++++ ++ .+.+||+.+++.+..+... ..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~-------~v~~~d~~~~~~~~~~~~~-~~ 296 (349)
T 1jmx_B 227 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN-------RLAKYDLKQRKLIKAANLD-HT 296 (349)
T ss_dssp CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES-------EEEEEETTTTEEEEEEECS-SC
T ss_pred cccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC-------eEEEEECccCeEEEEEcCC-CC
Confidence 0001123446 77777666 66 8999999999887777543 34
Q ss_pred eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEeccc
Q 046773 386 NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 386 v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh 423 (453)
+..+.++++++++++++. ++|++||+++++.+..++.+
T Consensus 297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 678899999988887655 99999999999999888655
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-15 Score=148.84 Aligned_cols=259 Identities=9% Similarity=0.030 Sum_probs=156.2
Q ss_pred CCCcEEEEEC--CCCeEEE-EecCCCCCccccccceEEEEEEc--CCeEEEEeC---CCCEEEEEeecCC-cceEEe---
Q 046773 162 ADGAVRLFDL--TTRLHVR-TFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATL---DGDIHVAVIDDVA-NETRTA--- 229 (453)
Q Consensus 162 ~D~TIrlWD~--~tg~~~~-tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~---D~tIkvWd~~~~g-~~~~~~--- 229 (453)
.++.|.+|++ ++|+... .+..+.. .+..++|+ |+ |++++. +++|++|++++ + ...+..
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~--------~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~-g~~~~~~~~~~ 83 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQ--------NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG-QTAHKLNTVVA 83 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECS--------CCCCEEECTTCE-EEEEEEETTEEEEEEEEEET-TEEEEEEEEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccC--------CcceEEEccCCe-EEEEEecCCCceEEEEEecC-CcEEEeeeeec
Confidence 3566777765 5676543 2222221 22336665 55 666554 68999999976 4 222221
Q ss_pred eecceecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCC-CCc--EEeccccc--CCcceeeeeeeeeeccceeEEEEc
Q 046773 230 HFGSVMDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQ-AEE--VFVGGDLT--DHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 230 ~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~-tg~--~~~g~~l~--~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
+... ...|+|+|||++ |++++ .|++|++||+. +|+ .+...... .+. .+.+...+.+++|+
T Consensus 84 ~~~~----p~~~a~spdg~~---l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~s 149 (347)
T 3hfq_A 84 PGTP----PAYVAVDEARQL---VYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPR-------PEQDGSHIHYTDLT 149 (347)
T ss_dssp ESCC----CSEEEEETTTTE---EEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSS-------TTCSSCCEEEEEEC
T ss_pred CCCC----CEEEEECCCCCE---EEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCC-------ccccCCCceEEEEC
Confidence 2211 224899999997 55666 78999999996 344 11100000 000 00122357789999
Q ss_pred CCceEEEEc--CCcEEEEECC-CCceEEEE--ee-ccCCeEEEEEEecCCEEEEE-eCCCccccCcceEEEEEcCC--Ce
Q 046773 304 SHESAVACT--SSRVITFDLR-NQGMVLGE--RG-YGRGLYVTSVDVNAEAYIVV-ENRELENQNRRLAIVRRVDT--FE 374 (453)
Q Consensus 304 ~~~~~vas~--d~tIrlWDl~-t~~~~~~~--~g-~~~~~~v~~~~~~g~~l~s~-s~dg~~~~~~~~i~Iw~~~t--g~ 374 (453)
|++.+.++. +++|++||+. ++...... .. .+....-.+|+|+|+.++++ ..++ .+++|+++. ++
T Consensus 150 pdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~-------~v~v~~~~~~~g~ 222 (347)
T 3hfq_A 150 PDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS-------QIASLKYDTQTGA 222 (347)
T ss_dssp TTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT-------EEEEEEEETTTTE
T ss_pred CCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC-------EEEEEEecCCCCc
Confidence 887544443 4689999999 44432211 11 11122335788888866554 4455 899999874 54
Q ss_pred e--EEEEEecC------CCeeEEEEeeCCCeEEEE-eC-CeEEEEECCC-C--eEEEEecccCCceEE--EEecCCCEEE
Q 046773 375 E--VCRFSLRA------DRNVNVMGCMNQGYALMC-VE-GVIRVWEVEG-G--EYMYSFRERIGEEVI--AFVGDDRHVA 439 (453)
Q Consensus 375 ~--v~~l~~~~------~~v~~~~~~~~~~~lls~-s~-~tIrlWD~~t-G--~~l~tL~gh~~~~V~--a~s~d~~~la 439 (453)
. +..+...+ .....++++|++++++++ .. ++|++||+.. | +.+..+..+... +. +|+||+++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~-~~~~~~spdg~~l~ 301 (347)
T 3hfq_A 223 FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF-PRDFDLDPTEAFVV 301 (347)
T ss_dssp EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC-CCEEEECTTSSEEE
T ss_pred eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC-cCeEEECCCCCEEE
Confidence 2 33333333 236678899999988544 44 9999999973 3 566677665444 33 7899999887
Q ss_pred EE--eCCcEEEEecC
Q 046773 440 AS--CGTNIHLWDFG 452 (453)
Q Consensus 440 sg--~D~~IklWDl~ 452 (453)
++ .+++|.||++.
T Consensus 302 v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 302 VVNQNTDNATLYARD 316 (347)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEEcCCCcEEEEEEe
Confidence 66 45899999653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=181.09 Aligned_cols=277 Identities=9% Similarity=-0.012 Sum_probs=168.4
Q ss_pred EEEecCC-EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEE--EcCCeEEEEeC---------CCCEEE
Q 046773 149 CLTLSDL-YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGII--ITDSQLIFATL---------DGDIHV 216 (453)
Q Consensus 149 ~lafs~~-~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~--f~g~~LasgS~---------D~tIkv 216 (453)
+++|+++ .++..+.|++|++||+.+|++.+.+.+|....+ .+.+++ +||+.|++++. |++|++
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSV-----NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTT-----TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccccc-----ceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 4566653 444455799999999999999888765321000 133444 46889999887 789999
Q ss_pred EEeecCCcce---EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee
Q 046773 217 AVIDDVANET---RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 217 Wd~~~~g~~~---~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
||+++ | .. .+. ...+ ..++|||||++ ||.++ |++|++||+.+++... ++..... -..+.++
T Consensus 95 ~d~~~-g-~~~~~~~l-~~~~----~~~~~SPDG~~---la~~~-~~~i~~~~~~~g~~~~---l~~~~~~--~~v~~g~ 158 (719)
T 1z68_A 95 YDLSN-G-EFVRGNEL-PRPI----QYLCWSPVGSK---LAYVY-QNNIYLKQRPGDPPFQ---ITFNGRE--NKIFNGI 158 (719)
T ss_dssp EETTT-T-EECCSSCC-CSSB----CCEEECSSTTC---EEEEE-TTEEEEESSTTSCCEE---CCCCCBT--TTEEESS
T ss_pred EECCC-C-ccccceec-Cccc----ccceECCCCCE---EEEEE-CCeEEEEeCCCCCcEE---EecCCCc--CCeEccc
Confidence 99987 5 11 111 1111 24899999997 56654 7899999999987321 1100000 0112344
Q ss_pred ccce---------eEEEEcCCceEE--EEcCC----------------------------------cEEEEECCCCceE-
Q 046773 294 TEFV---------GRVRVTSHESAV--ACTSS----------------------------------RVITFDLRNQGMV- 327 (453)
Q Consensus 294 ~~~v---------~~v~~s~~~~~v--as~d~----------------------------------tIrlWDl~t~~~~- 327 (453)
.++| .+++|+|++..+ ++.|. +|++||+.++++.
T Consensus 159 ~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~ 238 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG 238 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC
T ss_pred ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc
Confidence 4443 579999987533 34331 7889999987642
Q ss_pred -EEE------eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEE----cCCCeeEEEE----EecCCCee-----
Q 046773 328 -LGE------RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRR----VDTFEEVCRF----SLRADRNV----- 387 (453)
Q Consensus 328 -~~~------~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~----~~tg~~v~~l----~~~~~~v~----- 387 (453)
..+ .+|.....-.+++|++..+++..... ++...+.+|+ .+++++...+ ..+..++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~---~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 315 (719)
T 1z68_A 239 PQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRV---QNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVS 315 (719)
T ss_dssp CEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESS---TTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCC
T ss_pred eeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccc---cCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCC
Confidence 111 12322223344566654444433322 1223577778 7777654433 24455555
Q ss_pred EEEEeeCCCeEEE-EeC----CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-e-----CCcEEEEecC
Q 046773 388 NVMGCMNQGYALM-CVE----GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-C-----GTNIHLWDFG 452 (453)
Q Consensus 388 ~~~~~~~~~~lls-~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~-----D~~IklWDl~ 452 (453)
.+.++++++.++. .+. ..|.+||+.+++ +..|..+... |. .+. |++.|+.. . ++.++||.+.
T Consensus 316 ~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~-v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 316 TPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWE-AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp CCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSC-EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred ccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceE-EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 6789999987654 332 578999998887 5667655544 54 345 88877654 4 4889999763
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-15 Score=147.87 Aligned_cols=239 Identities=11% Similarity=0.011 Sum_probs=160.2
Q ss_pred EEEEEEc--CCeEEEEeC-------CCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEe
Q 046773 195 VSGIIIT--DSQLIFATL-------DGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIW 265 (453)
Q Consensus 195 V~~i~f~--g~~LasgS~-------D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvW 265 (453)
+..++|+ ++.|+.++. +++|.+||..+ +........+. ....++|+|||++ .+++.+.+++|.+|
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~---~~~~~~~s~dg~~--l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT-LEVTQAIHNDL---KPFGATINNTTQT--LWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT-CCEEEEEEESS---CCCSEEEETTTTE--EEEEETTTTEEEEE
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-CeEEEEEecCC---CcceEEECCCCCE--EEEEecCCCEEEEE
Confidence 3445554 567777764 56799999877 41111111111 1124899999996 24566778999999
Q ss_pred eCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEE-c-CCcEEEEECCCCceEEEEeeccCCeEEEE
Q 046773 266 DRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVAC-T-SSRVITFDLRNQGMVLGERGYGRGLYVTS 341 (453)
Q Consensus 266 D~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas-~-d~tIrlWDl~t~~~~~~~~g~~~~~~v~~ 341 (453)
|.++++...--.+.... ..-.........+.|+|++ +++++ . +++|.+||+++++.+.....+.......+
T Consensus 117 d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRK-----RTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA 191 (353)
T ss_dssp ETTTCCEEEEEESCCCC-----CCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred eCCCCeeEEEEecCCCc-----cccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence 99998843100000000 0000000125678898875 44554 2 57899999999876655432333233457
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec----CCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCe
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR----ADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGE 415 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~----~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~ 415 (453)
++++++.+++++.++ .+.+||..+++.+..+... ......+.++++++++..+.. +.|.+||+++++
T Consensus 192 ~s~dg~~l~~~~~~~-------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 192 LDSEGKRLYTTNADG-------ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp EETTTTEEEEECTTS-------EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred ECCCCCEEEEEcCCC-------eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 889999999888888 9999999999988877652 233566889999998776554 899999999999
Q ss_pred EEEEecccCCceEEEEecCCCEE-EEE-eCCcEEEEecC
Q 046773 416 YMYSFRERIGEEVIAFVGDDRHV-AAS-CGTNIHLWDFG 452 (453)
Q Consensus 416 ~l~tL~gh~~~~V~a~s~d~~~l-asg-~D~~IklWDl~ 452 (453)
.+..+..+... -.+|+||+++| ++. .|++|.+||+.
T Consensus 265 ~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 265 ILAKVAAPESL-AVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp EEEEEECSSCC-CEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEEEcCCCc-eEEECCCCCEEEEEECCCCeEEEEECC
Confidence 98888754433 34789999965 555 79999999974
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=170.29 Aligned_cols=225 Identities=10% Similarity=0.030 Sum_probs=153.4
Q ss_pred EEEE--EEcCCeEEEEeC-CCCEEEEEeecCC-cceEEeee-cceecCceEEEEeCCCceeeEEEEeeC---CCeEEEee
Q 046773 195 VSGI--IITDSQLIFATL-DGDIHVAVIDDVA-NETRTAHF-GSVMDDGVLIDFTGCSRYWVGLYAGLA---GRAFHIWD 266 (453)
Q Consensus 195 V~~i--~f~g~~LasgS~-D~tIkvWd~~~~g-~~~~~~~~-~~v~~~~~~v~Fs~dg~~~~~LaSgS~---D~tIrvWD 266 (453)
|.++ ++||++||++|. |++++||++++ | ...++.+. ..+ ..++|||| +. |++++. +...+||.
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-g~~~~lt~~~~~~~----~~~~~spd-~~---l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-GETVKLNREPINSV----LDPHYGVG-RV---ILVRDVSKGAEQHALFK 94 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEET-TEEEECCSSCCSEE----CEECTTCS-EE---EEEEECSTTSCCEEEEE
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEcC-CCcEeeeccccccc----ccccCCCC-eE---EEEeccCCCCcceEEEE
Confidence 4445 467999999988 99999999976 4 22333232 122 24789999 53 666664 56677766
Q ss_pred CCC---CcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEE-cCCcEEEEECCCCceEEEEeeccCCeEEEEE
Q 046773 267 RQA---EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVAC-TSSRVITFDLRNQGMVLGERGYGRGLYVTSV 342 (453)
Q Consensus 267 ~~t---g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas-~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~ 342 (453)
+.. +.... +. ...++. +.++.++++.++.++ .++.+.|||++++++......+. ...++
T Consensus 95 ~~~~~~g~~~~---l~---------~~~~~~--~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~ 157 (582)
T 3o4h_A 95 VNTSRPGEEQR---LE---------AVKPMR--ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVS 157 (582)
T ss_dssp EETTSTTCCEE---CT---------TSCSBE--EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred EeccCCCcccc---cc---------CCCCce--eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEE
Confidence 543 22111 00 011221 345556666655554 44566699999986533222222 34679
Q ss_pred EecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-C--eEEEEECCCCeEEEE
Q 046773 343 DVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-G--VIRVWEVEGGEYMYS 419 (453)
Q Consensus 343 ~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~--tIrlWD~~tG~~l~t 419 (453)
+|+|+.++.++.+.. +..++.+||+++++.. .++.+...+..+.++||+++++++.. + +|++||+++|++. .
T Consensus 158 spDG~~la~~~~~~~---~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGG---GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D 232 (582)
T ss_dssp EEETTEEEEEEEEET---TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred CCCCCEEEEEEEcCC---CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence 999999998877631 1127889998888754 66667777889999999999885544 6 9999999999988 7
Q ss_pred ecccCCceEE--E--------EecCCCEEEEE-eCCcEEEEec
Q 046773 420 FRERIGEEVI--A--------FVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 420 L~gh~~~~V~--a--------~s~d~~~lasg-~D~~IklWDl 451 (453)
+.+|... +. + |+|||++++++ .|++++||++
T Consensus 233 ~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 233 LELPSKD-FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCCSCSH-HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccCCCcC-hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 8888665 44 4 89999888888 9999999986
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-15 Score=142.49 Aligned_cols=257 Identities=11% Similarity=0.054 Sum_probs=154.6
Q ss_pred EEEEEecC--CEEEEEeCC-CcEEEEECC--CCe--EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeC-CCCEEE
Q 046773 147 CRCLTLSD--LYLACGFAD-GAVRLFDLT--TRL--HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATL-DGDIHV 216 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D-~TIrlWD~~--tg~--~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~-D~tIkv 216 (453)
+.+++|++ ++|++++.+ ++|++||+. +++ .+.++..+. .+..++|+ ++.|+.++. |++|++
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~dg~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG---------SLTHISTDHQGQFVFVGSYNAGNVSV 110 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS---------CCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC---------CCcEEEEcCCCCEEEEEecCCCeEEE
Confidence 56788875 678888877 999999998 665 344554321 23346664 666766654 888999
Q ss_pred EEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCCC-CcEEecccccCCcceeeeeeeee
Q 046773 217 AVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQA-EEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 217 Wd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~t-g~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
||++. + .......... .....++|+|||++ |++++ .|++|++||+.+ ++...-.. ..+..
T Consensus 111 ~d~~~-~~~~~~~~~~~~~--~~~~~~~~s~dg~~---l~~~~~~~~~v~~~d~~~~~~~~~~~~----------~~~~~ 174 (343)
T 1ri6_A 111 TRLED-GLPVGVVDVVEGL--DGCHSANISPDNRT---LWVPALKQDRICLFTVSDDGHLVAQDP----------AEVTT 174 (343)
T ss_dssp EEEET-TEEEEEEEEECCC--TTBCCCEECTTSSE---EEEEEGGGTEEEEEEECTTSCEEEEEE----------EEEEC
T ss_pred EECCC-CccccccccccCC--CCceEEEECCCCCE---EEEecCCCCEEEEEEecCCCceeeecc----------ccccc
Confidence 99952 3 1111111110 11124789999996 44555 899999999988 65211000 00111
Q ss_pred -eccceeEEEEcCCce--EEEE-cCCcEEEEECCC--CceE--EEEe----eccC--CeEEEEEEecCCEEEEE-eCCCc
Q 046773 293 -FTEFVGRVRVTSHES--AVAC-TSSRVITFDLRN--QGMV--LGER----GYGR--GLYVTSVDVNAEAYIVV-ENREL 357 (453)
Q Consensus 293 -h~~~v~~v~~s~~~~--~vas-~d~tIrlWDl~t--~~~~--~~~~----g~~~--~~~v~~~~~~g~~l~s~-s~dg~ 357 (453)
....+..++|+|++. ++++ .+++|++||+.. +... .... ++.. .....+|+++++.++.+ +.++
T Consensus 175 ~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~- 253 (343)
T 1ri6_A 175 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS- 253 (343)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT-
T ss_pred CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC-
Confidence 123567799998874 3445 457899999953 4321 1111 1111 12235677778777644 4566
Q ss_pred cccCcceEEEEEcC--CC--eeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEE--ECCCCeE--EEEecccCCce
Q 046773 358 ENQNRRLAIVRRVD--TF--EEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVW--EVEGGEY--MYSFRERIGEE 427 (453)
Q Consensus 358 ~~~~~~~i~Iw~~~--tg--~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlW--D~~tG~~--l~tL~gh~~~~ 427 (453)
.+++|+++ ++ +.+..+..... +..+.++++++++++++. ++|+|| |.++|+. +..+.......
T Consensus 254 ------~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~ 326 (343)
T 1ri6_A 254 ------LITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPM 326 (343)
T ss_dssp ------EEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCC
T ss_pred ------EEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCe
Confidence 99999998 33 34444444333 778899999998887763 999999 6667743 44454332331
Q ss_pred EEEEecCCC
Q 046773 428 VIAFVGDDR 436 (453)
Q Consensus 428 V~a~s~d~~ 436 (453)
-.+|.|+.+
T Consensus 327 ~i~~~~~~~ 335 (343)
T 1ri6_A 327 WVVVNAHEG 335 (343)
T ss_dssp EEEEEEEC-
T ss_pred eEEEEcccC
Confidence 125555443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-16 Score=170.74 Aligned_cols=270 Identities=9% Similarity=-0.021 Sum_probs=168.1
Q ss_pred EEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceE--EEEEEcCCeEEEEeCCC---------CE
Q 046773 148 RCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAV--SGIIITDSQLIFATLDG---------DI 214 (453)
Q Consensus 148 ~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V--~~i~f~g~~LasgS~D~---------tI 214 (453)
.+++|++ .+|+++ |++|++||+.||++...|.+|....+. ... -++++||+.|++++.|. .+
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFG---HSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCC---SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhc---ccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 3678875 478886 999999999999999888876532221 122 23456788999998874 45
Q ss_pred EEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee
Q 046773 215 HVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 215 kvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
.+||+.+ | ...+..+.+.+ ..++|||||++ ||.+ .|++|.|||+.+++... ++..... -..+.++
T Consensus 95 ~~~d~~~-~~~~~l~~~~~~~----~~~~~SPdG~~---la~~-~~~~i~~~~~~~~~~~~---lt~~g~~--~~~~~g~ 160 (740)
T 4a5s_A 95 DIYDLNK-RQLITEERIPNNT----QWVTWSPVGHK---LAYV-WNNDIYVKIEPNLPSYR---ITWTGKE--DIIYNGI 160 (740)
T ss_dssp EEEETTT-TEECCSSCCCTTE----EEEEECSSTTC---EEEE-ETTEEEEESSTTSCCEE---CCSCCBT--TTEEESB
T ss_pred EEEECCC-CcEEEcccCCCcc----eeeEECCCCCE---EEEE-ECCeEEEEECCCCceEE---EcCCCCc--cceecCc
Confidence 6999987 5 33333343332 24899999997 5555 47899999999987321 1100000 0123344
Q ss_pred cccee---------EEEEcCCceEEE--EcC-C-----------------------------------cEEEEECCC---
Q 046773 294 TEFVG---------RVRVTSHESAVA--CTS-S-----------------------------------RVITFDLRN--- 323 (453)
Q Consensus 294 ~~~v~---------~v~~s~~~~~va--s~d-~-----------------------------------tIrlWDl~t--- 323 (453)
.++|. .+.+||++..++ +.| . +|+|||+++
T Consensus 161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred ccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence 44443 488999885443 222 1 588899998
Q ss_pred Cc--eEEEEe------eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe----eEE--EE--EecCCCee
Q 046773 324 QG--MVLGER------GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE----EVC--RF--SLRADRNV 387 (453)
Q Consensus 324 ~~--~~~~~~------g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~----~v~--~l--~~~~~~v~ 387 (453)
++ ...++. ++...+.-.+++|+|+.++...... +++.+|.+||+++++ |.. .+ ..+..++.
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~---~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~ 317 (740)
T 4a5s_A 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI---QNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG 317 (740)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS---TTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS
T ss_pred CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC---CCEEEEEEEECCCCccccceeEEEEeeeccCCceEc
Confidence 73 222331 1322233345778887665554433 344578999999987 322 22 23444444
Q ss_pred -----EEEEeeCCCeEE-EEeC----CeEEEEECCCCeEEEEecccCCceEE-EEecCCCEEE-EE
Q 046773 388 -----NVMGCMNQGYAL-MCVE----GVIRVWEVEGGEYMYSFRERIGEEVI-AFVGDDRHVA-AS 441 (453)
Q Consensus 388 -----~~~~~~~~~~ll-s~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~-a~s~d~~~la-sg 441 (453)
...|+||++.++ ..+. ..|.+||+.++++.....| .-. |. .+.+|++.|+ ++
T Consensus 318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~-v~~~~~~d~~~i~f~~ 381 (740)
T 4a5s_A 318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWE-VIGIEALTSDYLYYIS 381 (740)
T ss_dssp SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSC-EEEEEEECSSEEEEEE
T ss_pred cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEE-EEEEEEEeCCEEEEEE
Confidence 678999999877 5553 6899999998876654444 223 44 3457787765 44
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=144.52 Aligned_cols=227 Identities=8% Similarity=-0.010 Sum_probs=152.0
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCC-CeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEe--CCCCEEEEEe
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTT-RLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFAT--LDGDIHVAVI 219 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~t-g~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS--~D~tIkvWd~ 219 (453)
+.+++|++ ++||+++ |+.|++||+.+ +++.+.+.+++.. .+.+++| +++.|++++ .|+.++||.+
T Consensus 44 v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~spdg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATI-------CNNDHGISPDGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCC-------BCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccc-------cccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence 67899986 6899887 88999999999 9888777665321 2334555 577899998 4567888887
Q ss_pred ecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC--CCcEEecccccCCcceeeeeeeeeecc
Q 046773 220 DDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ--AEEVFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 220 ~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~--tg~~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
+..+ ...+..+. . ...++|+|||+++ +++++.|++++||++. +++.. .+..+..
T Consensus 116 ~~~~~~~~~~~~~~-~----~~~~~~spdg~~l--~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~~~~ 173 (297)
T 2ojh_A 116 PSTGGTPRLMTKNL-P----SYWHGWSPDGKSF--TYCGIRDQVFDIYSMDIDSGVET---------------RLTHGEG 173 (297)
T ss_dssp ETTCCCCEECCSSS-S----EEEEEECTTSSEE--EEEEEETTEEEEEEEETTTCCEE---------------ECCCSSS
T ss_pred ECCCCceEEeecCC-C----ccceEECCCCCEE--EEEECCCCceEEEEEECCCCcce---------------EcccCCC
Confidence 6422 12221111 1 1247999999972 4578899999999954 44421 2345567
Q ss_pred ceeEEEEcCCce--EEEEc-CCcEEEEECC-CCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCcccc----CcceEEE
Q 046773 296 FVGRVRVTSHES--AVACT-SSRVITFDLR-NQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQ----NRRLAIV 367 (453)
Q Consensus 296 ~v~~v~~s~~~~--~vas~-d~tIrlWDl~-t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~----~~~~i~I 367 (453)
.+.++.++|++. ++++. ++.++||++. .++.+..+..+.......+++++++.++.++.++.... .+..+.+
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~ 253 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL 253 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence 788999998874 33443 6789999986 44455444444433344567788888888877631000 1236889
Q ss_pred EEcCCCee--EEEEEecCCCeeEEEEeeCCCeEEEEeC
Q 046773 368 RRVDTFEE--VCRFSLRADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 368 w~~~tg~~--v~~l~~~~~~v~~~~~~~~~~~lls~s~ 403 (453)
|+.++++. +..+..+...+..+.++|++.++++++.
T Consensus 254 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 254 MDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred EecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 99988765 3344456666788889999998887654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-15 Score=146.91 Aligned_cols=221 Identities=11% Similarity=0.055 Sum_probs=148.8
Q ss_pred eEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE-EecccccCCc
Q 046773 204 QLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV-FVGGDLTDHN 282 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~-~~g~~l~~~~ 282 (453)
.+++++.|++|++||.++ +........+. ....++|+|||+++ ++++..+++|.+||+++++. .
T Consensus 12 ~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~---~~~~~~~s~dg~~l--~~~~~~~~~i~~~d~~~~~~~~--------- 76 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDT-LEILNQITLGY---DFVDTAITSDCSNV--VVTSDFCQTLVQIETQLEPPKV--------- 76 (331)
T ss_dssp EEEEEGGGTEEEEEETTT-CCEEEEEECCC---CEEEEEECSSSCEE--EEEESTTCEEEEEECSSSSCEE---------
T ss_pred EEEEecCCCeEEEEeCcc-cceeeeEEccC---CcceEEEcCCCCEE--EEEeCCCCeEEEEECCCCceeE---------
Confidence 477889999999999987 51111111111 11158999999962 34445589999999999874 2
Q ss_pred ceeeeeeeeeeccceeEEEEcCCceEE-EEcCC----cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEe-CCC
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHESAV-ACTSS----RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVE-NRE 356 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~~~v-as~d~----tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s-~dg 356 (453)
..+..+..+..+++|+|++..+ ++.+. +|++||+++++++..... .....-.+++|+|+.+++++ .++
T Consensus 77 -----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~ 150 (331)
T 3u4y_A 77 -----VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSA 150 (331)
T ss_dssp -----EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTT
T ss_pred -----EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCC
Confidence 2334455565558999887533 33333 899999999876655432 22334567888887665554 445
Q ss_pred ccccCcce-EEEEEcCCCeeEE----EEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeE---EEEecccCCc
Q 046773 357 LENQNRRL-AIVRRVDTFEEVC----RFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEY---MYSFRERIGE 426 (453)
Q Consensus 357 ~~~~~~~~-i~Iw~~~tg~~v~----~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~---l~tL~gh~~~ 426 (453)
. +.+|+++....+. ...........+.+++++++++.+.. ++|++||+++++. +.++..+...
T Consensus 151 -------~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 223 (331)
T 3u4y_A 151 -------NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLP 223 (331)
T ss_dssp -------TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCC
T ss_pred -------ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCC
Confidence 6 9999988643331 11122344778899999987766553 8999999999998 8888755333
Q ss_pred eEEEEecCCCEEEEE--eCCcEEEEecC
Q 046773 427 EVIAFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 427 ~V~a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
.-.+|+||+++|+.+ .++.|.+||+.
T Consensus 224 ~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 224 GTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp CCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred ceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 112789999977544 67899999974
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=171.28 Aligned_cols=273 Identities=7% Similarity=-0.049 Sum_probs=163.7
Q ss_pred EEEEEecC--CEEEEEeCC---------CcEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCCCC
Q 046773 147 CRCLTLSD--LYLACGFAD---------GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDGD 213 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D---------~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~t 213 (453)
|.+++||+ ++||+++.| ++|+|||+.++++ +.|..+..+ ...+.. +++||+.||+++. ++
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~-----~~~~~~~~~SPdG~~la~~~~-~~ 135 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVS-----NAKLQYAGWGPKGQQLIFIFE-NN 135 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCC-----SCCCSBCCBCSSTTCEEEEET-TE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccc-----cccccccEECCCCCEEEEEEC-Ce
Confidence 57888886 689999875 6788999999987 455432211 001222 4456889999886 78
Q ss_pred EEEEEeecCC-cceEE-eeecceec--------------CceEEEEeCCCceeeEEEEeeCCC-----------------
Q 046773 214 IHVAVIDDVA-NETRT-AHFGSVMD--------------DGVLIDFTGCSRYWVGLYAGLAGR----------------- 260 (453)
Q Consensus 214 IkvWd~~~~g-~~~~~-~~~~~v~~--------------~~~~v~Fs~dg~~~~~LaSgS~D~----------------- 260 (453)
|++||+.+ | ...+. .+...+.. ....++|||||++ |++++.|.
T Consensus 136 i~~~~~~~-g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~---la~~~~~~~~~~~~~~~~~~~~~~~ 211 (723)
T 1xfd_A 136 IYYCAHVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR---LAYAAINDSRVPIMELPTYTGSIYP 211 (723)
T ss_dssp EEEESSSS-SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE---EEEEEEECTTSCEEEECCCSSSSSC
T ss_pred EEEEECCC-CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCE---EEEEEECCCccceEEeeccCCcCCC
Confidence 99999987 4 22221 11211100 1135899999997 55665442
Q ss_pred -----------------eEEEeeCCCCcE-EecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--EcC----CcE
Q 046773 261 -----------------AFHIWDRQAEEV-FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CTS----SRV 316 (453)
Q Consensus 261 -----------------tIrvWD~~tg~~-~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~d----~tI 316 (453)
+|++||+.+++. .. +..+ ..+..+...+.+++|+|++..++ +.. ..|
T Consensus 212 ~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~---l~~~------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 282 (723)
T 1xfd_A 212 TVKPYHYPKAGSENPSISLHVIGLNGPTHDLE---MMPP------DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSIL 282 (723)
T ss_dssp CCEEEECCBTTSCCCEEEEEEEESSSSCCCEE---CCCC------CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEE
T ss_pred cceeccCCCCCCCCCeeEEEEEECCCCceeEE---eeCC------ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEE
Confidence 799999988862 11 1100 01112346788899999986543 222 469
Q ss_pred EEEECCCCceEEEEeec-cCCe----EEEEEEecCCEEEEEeCCCccccCcceEEEEEcC--CCee---EEEEEecCCCe
Q 046773 317 ITFDLRNQGMVLGERGY-GRGL----YVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD--TFEE---VCRFSLRADRN 386 (453)
Q Consensus 317 rlWDl~t~~~~~~~~g~-~~~~----~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~--tg~~---v~~l~~~~~~v 386 (453)
++||+.++++......+ .... .-.+|+|+|+.++.++.+.... .....+||.++ ++.. ...++.....+
T Consensus 283 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~-~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 283 TLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG-RGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (723)
T ss_dssp EEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS-SSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred EEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC-CcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence 99999998865443222 1111 1357889999887653222000 01134454443 3322 44444322234
Q ss_pred eE-EEEeeCCCeEEEEeC----CeEEEEECCCC--eEEEEecc---cCCceEE--EEecCCCEEEEE
Q 046773 387 VN-VMGCMNQGYALMCVE----GVIRVWEVEGG--EYMYSFRE---RIGEEVI--AFVGDDRHVAAS 441 (453)
Q Consensus 387 ~~-~~~~~~~~~lls~s~----~tIrlWD~~tG--~~l~tL~g---h~~~~V~--a~s~d~~~lasg 441 (453)
.. +.+++++++++..+. ++++||++... .....|.+ |... +. +|+||+++|+..
T Consensus 362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCT-YFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCC-CCEEEECTTSSEEEEE
T ss_pred EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCC-eEEEEECCCCCEEEEE
Confidence 44 578999999875543 68999998753 24555654 4444 43 789999988754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.3e-15 Score=142.82 Aligned_cols=240 Identities=11% Similarity=0.058 Sum_probs=154.1
Q ss_pred EEEEEecC--CE-EEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEe------------
Q 046773 147 CRCLTLSD--LY-LACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFAT------------ 209 (453)
Q Consensus 147 v~~lafs~--~~-LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS------------ 209 (453)
+.+++|++ ++ +++++.+++|.+||+.+++.++++...+.. .+...+.+++| +++.|++++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE---ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---cccccccceEECCCCCEEEEEecccccccccccc
Confidence 35677875 44 567778899999999999998887632100 00001223555 467788876
Q ss_pred CCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 210 LDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 210 ~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
.|+.|.+||+.+ +........+. ....++|+|||++ |+++ ++.|.+||+++++...-
T Consensus 113 ~~~~i~v~d~~~-~~~~~~~~~~~---~~~~~~~s~dg~~---l~~~--~~~i~~~d~~~~~~~~~-------------- 169 (337)
T 1pby_B 113 QPTRVALYDAET-LSRRKAFEAPR---QITMLAWARDGSK---LYGL--GRDLHVMDPEAGTLVED-------------- 169 (337)
T ss_dssp CCCEEEEEETTT-TEEEEEEECCS---SCCCEEECTTSSC---EEEE--SSSEEEEETTTTEEEEE--------------
T ss_pred cCceEEEEECCC-CcEEEEEeCCC---CcceeEECCCCCE---EEEe--CCeEEEEECCCCcEeee--------------
Confidence 679999999976 41111111111 1123789999997 4554 68899999999884310
Q ss_pred eeeeccceeEEEEcCCce--EEEEcC-C-----------------------cEEEEECCCCceEEE-EeeccCCeEEEEE
Q 046773 290 LTEFTEFVGRVRVTSHES--AVACTS-S-----------------------RVITFDLRNQGMVLG-ERGYGRGLYVTSV 342 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~--~vas~d-~-----------------------tIrlWDl~t~~~~~~-~~g~~~~~~v~~~ 342 (453)
+..+. +...+.++|++. ++++.. + .|.+||++++++... ...+.....-.++
T Consensus 170 ~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 248 (337)
T 1pby_B 170 KPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV 248 (337)
T ss_dssp ECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred eeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEE
Confidence 00000 000112333332 111111 1 579999999876422 2233333334667
Q ss_pred EecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEec
Q 046773 343 DVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 343 ~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~ 421 (453)
+++++.++++ ++ .+.+||..+++.+..+... ..+..+.++++++++++++. ++|++||+++++.+..++
T Consensus 249 s~dg~~l~~~--~~-------~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 249 NPAKTRAFGA--YN-------VLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp CTTSSEEEEE--ES-------EEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEEEe--CC-------eEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 8888887776 56 9999999999888777643 44678899999998887765 999999999999998886
Q ss_pred cc
Q 046773 422 ER 423 (453)
Q Consensus 422 gh 423 (453)
.+
T Consensus 319 ~~ 320 (337)
T 1pby_B 319 LP 320 (337)
T ss_dssp CG
T ss_pred cC
Confidence 54
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-15 Score=146.50 Aligned_cols=220 Identities=7% Similarity=-0.037 Sum_probs=146.3
Q ss_pred cCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccc
Q 046773 201 TDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDL 278 (453)
Q Consensus 201 ~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l 278 (453)
++..+++++.|++|++||..+ + ...+..+.. .....++|+|||+. .+++++.+++|.+||+++++...
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~---~~~~~~~~s~dg~~--~~v~~~~~~~i~~~d~~t~~~~~---- 79 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDK---FGPGTAMMAPDNRT--AYVLNNHYGDIYGIDLDTCKNTF---- 79 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTT-TEEEEEEECSSC---CSSCEEEECTTSSE--EEEEETTTTEEEEEETTTTEEEE----
T ss_pred CCEEEEEeCCCCeEEEEECCC-CcEEEEEecCCC---CCCceeEECCCCCE--EEEEeCCCCcEEEEeCCCCcEEE----
Confidence 355788999999999999987 4 122222110 01235899999986 24566788999999999988431
Q ss_pred cCCcceeeeeeee-ee-----ccceeEEEEcCCc--eEEEEcC------------CcEEEEECCCCceE---EEEeeccC
Q 046773 279 TDHNTVMGWRMLT-EF-----TEFVGRVRVTSHE--SAVACTS------------SRVITFDLRNQGMV---LGERGYGR 335 (453)
Q Consensus 279 ~~~~~v~~w~~l~-~h-----~~~v~~v~~s~~~--~~vas~d------------~tIrlWDl~t~~~~---~~~~g~~~ 335 (453)
.+. .+ ...+..++|+|++ +++++.+ ++|.+||+++++.. ..... ..
T Consensus 80 ----------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~ 148 (349)
T 1jmx_B 80 ----------HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PR 148 (349)
T ss_dssp ----------EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CS
T ss_pred ----------EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CC
Confidence 011 11 1236778999876 3444433 78999999985432 22222 22
Q ss_pred CeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC--------------------------------
Q 046773 336 GLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-------------------------------- 383 (453)
Q Consensus 336 ~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-------------------------------- 383 (453)
.....+++++++ ++++ ++ .+.+||..+++.+..+....
T Consensus 149 ~~~~~~~s~dg~-l~~~--~~-------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T 1jmx_B 149 QVYLMRAADDGS-LYVA--GP-------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 218 (349)
T ss_dssp SCCCEEECTTSC-EEEE--SS-------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred cccceeECCCCc-EEEc--cC-------cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence 233355788888 5443 44 68999999888776654331
Q ss_pred ------------------------------------CCeeEEEEee-CCCeEEEEeCCeEEEEECCCCeEEEEecccCCc
Q 046773 384 ------------------------------------DRNVNVMGCM-NQGYALMCVEGVIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 384 ------------------------------------~~v~~~~~~~-~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
.....+.+++ ++++++++ ++.|.+||+++++.+.++......
T Consensus 219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~ 297 (349)
T 1jmx_B 219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTY 297 (349)
T ss_dssp C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCC
T ss_pred cCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCc
Confidence 0122344557 78887766 889999999999998888643332
Q ss_pred eEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 427 EVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 427 ~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.-.+|+||+++|+++ .|++|++||+.
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred cceEECCCCCEEEEecCCCeEEEEecc
Confidence 123789999988778 88999999974
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-14 Score=140.88 Aligned_cols=241 Identities=11% Similarity=0.052 Sum_probs=149.2
Q ss_pred EEEEEecCC-EEEEEeC---CCcEEEEECCCCeE--EEEecCCCCCccccccceEEEEEE--cCCeEEEEe-CCCCEEEE
Q 046773 147 CRCLTLSDL-YLACGFA---DGAVRLFDLTTRLH--VRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFAT-LDGDIHVA 217 (453)
Q Consensus 147 v~~lafs~~-~LaSGS~---D~TIrlWD~~tg~~--~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS-~D~tIkvW 217 (453)
+..++|+++ .|++++. |++|++||+.+++. +.++..+.. .+..++| +|+.|++++ .+++|++|
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~--------~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGT--------PPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC--------CCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCC--------CCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 356888763 2555544 69999999988873 344332221 2334554 577888887 68899999
Q ss_pred EeecCC-cceEEeee--cce------ecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCC-CCcEEecccccCCcceeee
Q 046773 218 VIDDVA-NETRTAHF--GSV------MDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ-AEEVFVGGDLTDHNTVMGW 287 (453)
Q Consensus 218 d~~~~g-~~~~~~~~--~~v------~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~-tg~~~~g~~l~~~~~v~~w 287 (453)
+++..| ...+.... +.- ......++|+|||+. +++...+++|++||+. +|+...-
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l---~v~~~~~~~v~~~~~~~~g~~~~~------------ 178 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL---AVIDLGSDKVYVYNVSDAGQLSEQ------------ 178 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE---EEEETTTTEEEEEEECTTSCEEEE------------
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE---EEEeCCCCEEEEEEECCCCcEEEe------------
Confidence 997434 22222111 100 001124899999993 5677788999999998 5652110
Q ss_pred eeeeee-ccceeEEEEcCCce--EEEEc-CCcEEEEECCC--CceEE--EEeecc------CCeEEEEEEecCCEE-EEE
Q 046773 288 RMLTEF-TEFVGRVRVTSHES--AVACT-SSRVITFDLRN--QGMVL--GERGYG------RGLYVTSVDVNAEAY-IVV 352 (453)
Q Consensus 288 ~~l~~h-~~~v~~v~~s~~~~--~vas~-d~tIrlWDl~t--~~~~~--~~~g~~------~~~~v~~~~~~g~~l-~s~ 352 (453)
..+... ......++|+|++. ++++. +++|++||+.. ++... ...... ....-.+|+++|+.+ ++.
T Consensus 179 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~ 258 (347)
T 3hfq_A 179 SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN 258 (347)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence 001111 12456789999874 34343 47899999874 43211 111111 112335577888876 444
Q ss_pred eCCCccccCcceEEEEEcCC-C--eeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEE--ECCCCeEE
Q 046773 353 ENRELENQNRRLAIVRRVDT-F--EEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVW--EVEGGEYM 417 (453)
Q Consensus 353 s~dg~~~~~~~~i~Iw~~~t-g--~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlW--D~~tG~~l 417 (453)
..++ .++||+++. + +.+..+..+......++++|++++++++.. ++|+|| |.++|+..
T Consensus 259 ~~~~-------~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 259 RGYN-------TLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ETTT-------EEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCC-------EEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 5567 999999873 2 455555554555788999999998887654 899999 66778764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-15 Score=147.05 Aligned_cols=274 Identities=13% Similarity=0.054 Sum_probs=167.7
Q ss_pred EEecC--CEEEEEeC-CCc--EEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-
Q 046773 150 LTLSD--LYLACGFA-DGA--VRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA- 223 (453)
Q Consensus 150 lafs~--~~LaSGS~-D~T--IrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g- 223 (453)
.+||+ ++||..+. |++ |.+||+.++++.+...++....++ ..++++|+.|++++.+++|++||+.+ +
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~------~~~spdg~~l~~~~~~~~l~~~d~~~-g~ 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFG------GFLSPDDDALFYVKDGRNLMRVDLAT-LE 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSS------CEECTTSSEEEEEETTTEEEEEETTT-CC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccc------eEEcCCCCEEEEEeCCCeEEEEECCC-Cc
Confidence 66764 68998887 664 888999999987766554321111 12556788999999999999999987 5
Q ss_pred cc-eEEeeecceecCceEEEEeCCCceeeEEE-------------------EeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 224 NE-TRTAHFGSVMDDGVLIDFTGCSRYWVGLY-------------------AGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 224 ~~-~~~~~~~~v~~~~~~v~Fs~dg~~~~~La-------------------SgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
.. ....+.+.+. .....++|||+.++.+. +.+.+..|.+||+++++..
T Consensus 114 ~~~~~~~~~~~~~--~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~---------- 181 (388)
T 3pe7_A 114 ENVVYQVPAEWVG--YGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST---------- 181 (388)
T ss_dssp EEEEEECCTTEEE--EEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE----------
T ss_pred ceeeeechhhccc--ccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE----------
Confidence 11 2222222111 01134589998643211 1234578999999998732
Q ss_pred eeeeeeeeeeccceeEEEEcC-CceEE--EEcC------CcEEEEECCCCceEEEEeeccC--CeEEEEEEecCCEEEEE
Q 046773 284 VMGWRMLTEFTEFVGRVRVTS-HESAV--ACTS------SRVITFDLRNQGMVLGERGYGR--GLYVTSVDVNAEAYIVV 352 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s~-~~~~v--as~d------~tIrlWDl~t~~~~~~~~g~~~--~~~v~~~~~~g~~l~s~ 352 (453)
.+..+...+..++|+| ++..+ .+.+ ..|.++|+.++.. ..+..+.. .....+++|+|+.++..
T Consensus 182 -----~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 182 -----VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp -----EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred -----EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEE
Confidence 2334556788899999 77433 2332 2678888876532 33322221 12234688888888666
Q ss_pred eCCCccccCcceEEEEEcCCCeeEEEEEecCC-----CeeEEEEeeCCCeEEEE---------eC-CeEEEEECCCCeEE
Q 046773 353 ENRELENQNRRLAIVRRVDTFEEVCRFSLRAD-----RNVNVMGCMNQGYALMC---------VE-GVIRVWEVEGGEYM 417 (453)
Q Consensus 353 s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~-----~v~~~~~~~~~~~lls~---------s~-~tIrlWD~~tG~~l 417 (453)
+.... .....+.+||+++++......+... ......++|++++++.. .. ..|.+||+++++.
T Consensus 256 ~~~~~--~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~- 332 (388)
T 3pe7_A 256 SYLKG--SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ- 332 (388)
T ss_dssp EEETT--CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-
T ss_pred ecCCC--CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-
Confidence 54320 1112488999998874322221110 01123688898887743 23 7999999999875
Q ss_pred EEecccCC-----------ceEE--EEecCCCEEEEE--eCCcEEEEecC
Q 046773 418 YSFRERIG-----------EEVI--AFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 418 ~tL~gh~~-----------~~V~--a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
..|..|.. . +. +|+|||++|+.. .++...||.+.
T Consensus 333 ~~l~~~~~~~~~~~~~~~~~-~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 333 HRVARHDTSWKVFEGDRQVT-HPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEEECCCCCCCBTTBSSTT-CCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEeccccCcccccccccccC-CCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 45655554 2 33 889999988754 67888888653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-14 Score=141.75 Aligned_cols=266 Identities=12% Similarity=0.029 Sum_probs=160.2
Q ss_pred EEEEEeCC--CcEEEEE--CCCCeEEE--Eec-CCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEee-cCC-c
Q 046773 156 YLACGFAD--GAVRLFD--LTTRLHVR--TFR-PQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVID-DVA-N 224 (453)
Q Consensus 156 ~LaSGS~D--~TIrlWD--~~tg~~~~--tl~-gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~-~~g-~ 224 (453)
+|..|++. +.|.+|+ .++|+... ... +... .+..++| +++.|++++.+ +|.+|+++ + | .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~--------~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~-g~~ 73 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDE--------PISWMTFDHERKNIYGAAMK-KWSSFAVKSP-TEI 73 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTC--------CCSEEEECTTSSEEEEEEBT-EEEEEEEEET-TEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCC--------CCcEEEECCCCCEEEEEccc-eEEEEEECCC-CCE
Confidence 35556664 5677765 46776432 111 1110 1234555 57789888888 99999997 5 5 1
Q ss_pred ceEEeeecceecCceEEEEeCCCceeeEEEEee-------------CCCeEEEeeCC-CCcEEecccccCCcceeeeeee
Q 046773 225 ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL-------------AGRAFHIWDRQ-AEEVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 225 ~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-------------~D~tIrvWD~~-tg~~~~g~~l~~~~~v~~w~~l 290 (453)
.....+... .....++|+|||+++. |++++ .|+++++|++. +|+... .+ ..+
T Consensus 74 ~~~~~~~~~--g~~~~~~~spdg~~l~-~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~--------~~---~~~ 139 (365)
T 1jof_A 74 VHEASHPIG--GHPRANDADTNTRAIF-LLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEK--------NV---QNY 139 (365)
T ss_dssp EEEEEEECC--SSGGGGCTTSCCEEEE-EEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEE--------EE---EEE
T ss_pred EEeeEeecC--CCCccEEECCCCCEEE-EEEecCCcceeccceeecCCceEEEEccCCCCcCcc--------eE---eeE
Confidence 111122100 0112378999999521 44543 68999999997 465321 00 001
Q ss_pred -eeeccceeEEEEcCCce--EEEEc-CCcEEEEECC-CCceEEE--Eee--ccCCeEEEEEEecCCEEEEEeC-CCcccc
Q 046773 291 -TEFTEFVGRVRVTSHES--AVACT-SSRVITFDLR-NQGMVLG--ERG--YGRGLYVTSVDVNAEAYIVVEN-RELENQ 360 (453)
Q Consensus 291 -~~h~~~v~~v~~s~~~~--~vas~-d~tIrlWDl~-t~~~~~~--~~g--~~~~~~v~~~~~~g~~l~s~s~-dg~~~~ 360 (453)
..+...+.+++|+|++. ++++. +++|++||+. +++.... ... ++....-.+|+|+|+.+++++. ++
T Consensus 140 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~---- 215 (365)
T 1jof_A 140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN---- 215 (365)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT----
T ss_pred EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC----
Confidence 02345678899999874 33332 4689999998 7764322 121 2333334567888888877664 55
Q ss_pred CcceEEEEEcC--CCeeE---EEEEecC------C-------CeeEEE-EeeCCCeEEEEeC--C-----eEEEEECC-C
Q 046773 361 NRRLAIVRRVD--TFEEV---CRFSLRA------D-------RNVNVM-GCMNQGYALMCVE--G-----VIRVWEVE-G 413 (453)
Q Consensus 361 ~~~~i~Iw~~~--tg~~v---~~l~~~~------~-------~v~~~~-~~~~~~~lls~s~--~-----tIrlWD~~-t 413 (453)
++++|+++ +++.. ..+..-+ . .+..++ ++|++++++++.. + +|++||+. +
T Consensus 216 ---~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~ 292 (365)
T 1jof_A 216 ---RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp ---EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred ---eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC
Confidence 89999876 56542 2232211 1 366788 8999998876543 4 89999996 7
Q ss_pred CeEEEE---ecccCCc-eEEEEec---CCCEEEEE-e-CCcEEEEecC
Q 046773 414 GEYMYS---FRERIGE-EVIAFVG---DDRHVAAS-C-GTNIHLWDFG 452 (453)
Q Consensus 414 G~~l~t---L~gh~~~-~V~a~s~---d~~~lasg-~-D~~IklWDl~ 452 (453)
|+.... +..+... .-.+|+| ||++|+++ . +++|+||++.
T Consensus 293 g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 293 GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 775432 3223222 0127899 89999887 5 5899999874
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-13 Score=137.62 Aligned_cols=249 Identities=14% Similarity=0.041 Sum_probs=153.0
Q ss_pred EEEEEecC--CEEEEEeCC----CcEEEEECCC--CeE--EEEecCCCCCccccccceEEEEEEcCCeEEEEe-CCCCEE
Q 046773 147 CRCLTLSD--LYLACGFAD----GAVRLFDLTT--RLH--VRTFRPQHSDRLGQFSRAVSGIIITDSQLIFAT-LDGDIH 215 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D----~TIrlWD~~t--g~~--~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS-~D~tIk 215 (453)
+..++|++ ++|++++.| ++|++|++.. |+. +.++..+.. ....++++++.|+.++ .+++|.
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~--------~p~~~~~dg~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA--------DPCYLTTNGKNIVTANYSGGSIT 123 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS--------CEEEEEECSSEEEEEETTTTEEE
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC--------CcEEEEECCCEEEEEECCCCEEE
Confidence 35678875 689998886 7999999865 553 223321111 3445777888887776 578999
Q ss_pred EEEeecCC-cceE---Eeeeccee-------cCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE------Eecccc
Q 046773 216 VAVIDDVA-NETR---TAHFGSVM-------DDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV------FVGGDL 278 (453)
Q Consensus 216 vWd~~~~g-~~~~---~~~~~~v~-------~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~------~~g~~l 278 (453)
+|++...+ +... ..+.+.-. .....++|+|||+++ +++...+++|++|++..... +...
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l--~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~-- 199 (361)
T 3scy_A 124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL--LADDLGTDQIHKFNINPNANADNKEKFLTK-- 199 (361)
T ss_dssp EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE--EEEETTTTEEEEEEECTTCCTTTCCCCEEE--
T ss_pred EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE--EEEeCCCCEEEEEEEcCCCCcccccceeec--
Confidence 99997533 1111 11211100 001348999999972 45556689999998875321 1000
Q ss_pred cCCcceeeeeeeeeeccceeEEEEcCCce--EEEE-cCCcEEEEECCCCceEEE--Ee---eccCCeEEEEEEecCCEEE
Q 046773 279 TDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVAC-TSSRVITFDLRNQGMVLG--ER---GYGRGLYVTSVDVNAEAYI 350 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas-~d~tIrlWDl~t~~~~~~--~~---g~~~~~~v~~~~~~g~~l~ 350 (453)
.... -..+ ........++|+|++. ++++ .+++|++||+.++..... .. .+.....-.+|+++|+.++
T Consensus 200 ---~~~~-~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~ 274 (361)
T 3scy_A 200 ---GTPE-AFKV-APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLY 274 (361)
T ss_dssp ---EEEE-EEEC-CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEE
T ss_pred ---cccc-ceec-CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEE
Confidence 0000 0001 1123456799999874 4445 368999999997643211 11 1112233456888898876
Q ss_pred EEeCC--CccccCcceEEEEEcC--CCe--eEEEEEecCCCeeEEEEeeCCCeEEEEe-C-CeEEEE--ECCCCeEEEEe
Q 046773 351 VVENR--ELENQNRRLAIVRRVD--TFE--EVCRFSLRADRNVNVMGCMNQGYALMCV-E-GVIRVW--EVEGGEYMYSF 420 (453)
Q Consensus 351 s~s~d--g~~~~~~~~i~Iw~~~--tg~--~v~~l~~~~~~v~~~~~~~~~~~lls~s-~-~tIrlW--D~~tG~~l~tL 420 (453)
++..+ + +++||+++ +++ .+..+.. ....+.++++|++++++++. . ++|++| |.++|+.....
T Consensus 275 v~~~~~~~-------~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 275 ASNRLKAD-------GVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp EEECSSSC-------EEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred EECCCCCC-------EEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 65554 5 89999986 454 3444443 44577899999999888776 3 899995 66788875543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=157.31 Aligned_cols=161 Identities=9% Similarity=0.020 Sum_probs=116.0
Q ss_pred EEEEeCCCceeeEEE----EeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC-c--eEEEEc
Q 046773 240 LIDFTGCSRYWVGLY----AGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH-E--SAVACT 312 (453)
Q Consensus 240 ~v~Fs~dg~~~~~La----SgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~-~--~~vas~ 312 (453)
.++|+|+|++ || +|+.|++|+|||++++.. +. ......+.....+.+|...|.+|+|+|+ . +++++.
T Consensus 97 ~l~~spdg~~---lav~~~sgs~d~~v~iwd~~~~~~--~~-~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 97 HLALSCDNLT---LSACMMSSEYGSIIAFFDVRTFSN--EA-KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp EEEECTTSCE---EEEEEEETTTEEEEEEEEHHHHHC--TT-CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred EEEEcCCCCE---EEEEEeccCCCceEEEEEcccccc--CC-cCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 4899999997 56 899999999999976510 00 0000001112456789999999999986 3 455678
Q ss_pred CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC-------C
Q 046773 313 SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD-------R 385 (453)
Q Consensus 313 d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~-------~ 385 (453)
|++|+|||++++.++....+|...+...+++++|+.+++++.|+ +|+|||.. ++....+..+.. .
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg-------~v~iwd~~-~~~~~~~~~~~~~~~~~~~~ 242 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNG-------TVVQYLPT-LQEKKVIPCPPFYESDHPVR 242 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTS-------CEEEECTT-CCEEEEECCCTTCCTTSCEE
T ss_pred CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCC-------cEEEEccC-CcccccccCCcccCCCCcee
Confidence 89999999999866555556666676777888899999999999 99999998 666666654432 4
Q ss_pred eeEEEEeeCCCeEEEEeC--C------eEEEEECCCC
Q 046773 386 NVNVMGCMNQGYALMCVE--G------VIRVWEVEGG 414 (453)
Q Consensus 386 v~~~~~~~~~~~lls~s~--~------tIrlWD~~tG 414 (453)
+.++.++++..++++.+. + .+++||+...
T Consensus 243 v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 243 VLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 677788887766654432 2 4999999864
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=156.30 Aligned_cols=271 Identities=12% Similarity=0.005 Sum_probs=162.8
Q ss_pred EEEEEecCCE--EEEE--eCCCcEEEEECCCCeEEEEecCCCCCcccc---c-cceEEEEE--EcCCe-EEEEeCCCCEE
Q 046773 147 CRCLTLSDLY--LACG--FADGAVRLFDLTTRLHVRTFRPQHSDRLGQ---F-SRAVSGII--ITDSQ-LIFATLDGDIH 215 (453)
Q Consensus 147 v~~lafs~~~--LaSG--S~D~TIrlWD~~tg~~~~tl~gh~~~~~~~---~-s~~V~~i~--f~g~~-LasgS~D~tIk 215 (453)
+.+++|+++. +++. +.|++.+||.+..+...+.|.+|....... + ...+. .+ +||+. |++.+. .+.+
T Consensus 26 ~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~SPDg~~~la~~~~-~~~~ 103 (662)
T 3azo_A 26 PACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWA-GVPRPAGGPLLVFTHF-GDQR 103 (662)
T ss_dssp CEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEE-EECCSSSSCEEEEEBT-TTCC
T ss_pred cceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccce-eeeecCCCeEEEEEEC-CCCe
Confidence 7899999974 4455 458899999976666677887664321100 0 00111 22 56888 887654 2445
Q ss_pred EEEeecC----C-cceEEe-----eecceecCceEEEEeCCCceeeEEEEeeCC----------CeEEEeeCCC------
Q 046773 216 VAVIDDV----A-NETRTA-----HFGSVMDDGVLIDFTGCSRYWVGLYAGLAG----------RAFHIWDRQA------ 269 (453)
Q Consensus 216 vWd~~~~----g-~~~~~~-----~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D----------~tIrvWD~~t------ 269 (453)
||.++.. + ...++. |...+ ..++|||||++ |++++.| .+|.+||+.+
T Consensus 104 l~~~~~~~~g~~~~~~l~~~~~~~~~~~~----~~~~~spDg~~---l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 104 LYAFEPDAPGGAVPRPLTPVSAVGGGLRW----ADPVLLPERGE---VWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp EEEECTTSTTCCCCEECSCCCCSTTCEEE----EEEEEETTTTE---EEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred EEEEcCCCCCCCCCEeccCCccCCCCccc----cCcEECCCCCE---EEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 5555432 3 233332 11111 24899999997 6666766 6899999998
Q ss_pred CcEEecccccCCcceeeeeeee-eeccceeEEEEcCCce--EEEEcC--------CcEEEEECC-CCc--eEEEE-eecc
Q 046773 270 EEVFVGGDLTDHNTVMGWRMLT-EFTEFVGRVRVTSHES--AVACTS--------SRVITFDLR-NQG--MVLGE-RGYG 334 (453)
Q Consensus 270 g~~~~g~~l~~~~~v~~w~~l~-~h~~~v~~v~~s~~~~--~vas~d--------~tIrlWDl~-t~~--~~~~~-~g~~ 334 (453)
++.. .+. .+...+..++|+|++. +.++.+ .+|++||+. ++. ....+ .++.
T Consensus 177 ~~~~---------------~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 177 SAVR---------------ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp GGSE---------------ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred Ccee---------------EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 6521 233 3345677789999884 334433 369999999 561 23333 3334
Q ss_pred CCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC--CCeeEEEEEecCC-----C---eeEEEEeeCCCeEEEEeCC
Q 046773 335 RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD--TFEEVCRFSLRAD-----R---NVNVMGCMNQGYALMCVEG 404 (453)
Q Consensus 335 ~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~--tg~~v~~l~~~~~-----~---v~~~~~~~~~~~lls~s~~ 404 (453)
....-.+++++|+.+++++.++ ..+||.++ +++.......+.+ + +..+.+++++..++++..+
T Consensus 242 ~~~~~~~~spdg~l~~~~~~~~-------~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~ 314 (662)
T 3azo_A 242 EAIAQAEWAPDGSLIVATDRTG-------WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKG 314 (662)
T ss_dssp BCEEEEEECTTSCEEEEECTTS-------SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSS
T ss_pred ceEcceEECCCCeEEEEECCCC-------CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcC
Confidence 4455566788888666666666 55666555 5554332222211 1 3456666676655544338
Q ss_pred eEEEE--ECCCCeEEEEecccCCceEEEE-ecCCCEEE--EE-eCCcEEEEe
Q 046773 405 VIRVW--EVEGGEYMYSFRERIGEEVIAF-VGDDRHVA--AS-CGTNIHLWD 450 (453)
Q Consensus 405 tIrlW--D~~tG~~l~tL~gh~~~~V~a~-s~d~~~la--sg-~D~~IklWD 450 (453)
+++|| |+.+++ +.+|..|.+. +..+ ++|+..++ ++ .+....||.
T Consensus 315 ~~~l~~~d~~~~~-~~~l~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 315 AAVLGILDPESGE-LVDAAGPWTE-WAATLTVSGTRAVGVAASPRTAYEVVE 364 (662)
T ss_dssp SCEEEEEETTTTE-EEECCSSCCE-EEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ccEEEEEECCCCc-EEEecCCCCe-EEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence 88899 766666 7888888776 7777 88887543 33 454445553
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-13 Score=134.37 Aligned_cols=268 Identities=8% Similarity=0.019 Sum_probs=158.4
Q ss_pred EEEEEeC----CCcEEEEEC--CCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCC----CCEEEEEeecC-
Q 046773 156 YLACGFA----DGAVRLFDL--TTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLD----GDIHVAVIDDV- 222 (453)
Q Consensus 156 ~LaSGS~----D~TIrlWD~--~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D----~tIkvWd~~~~- 222 (453)
++..|+| ++.|.+|++ ++|+.......+.. .+..++| +++.|++++.+ ++|.+|+++..
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~--------~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVA--------NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK 86 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECS--------CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCC--------CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence 4455654 578999965 66764332221111 2233555 57789998886 79999999763
Q ss_pred C-cceEEe-eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe------cccccCCcceeeeeeeeeec
Q 046773 223 A-NETRTA-HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV------GGDLTDHNTVMGWRMLTEFT 294 (453)
Q Consensus 223 g-~~~~~~-~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~------g~~l~~~~~v~~w~~l~~h~ 294 (453)
| ...+.. .... .....++| ||+++ +++...|++|.+||+.+...+. .+.-..+ ...+.+.
T Consensus 87 g~~~~~~~~~~~~--~~p~~~~~--dg~~l--~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~------~~~~~~~ 154 (361)
T 3scy_A 87 GTLHLLNTQKTMG--ADPCYLTT--NGKNI--VTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP------DKERQTM 154 (361)
T ss_dssp TEEEEEEEEECSS--SCEEEEEE--CSSEE--EEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS------CTTTCSS
T ss_pred CcEEEeeEeccCC--CCcEEEEE--CCCEE--EEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC------CccccCC
Confidence 3 222221 1111 11123566 77762 3344468999999997643110 0000000 0011223
Q ss_pred cceeEEEEcCCce--EEEEc-CCcEEEEECCCCce------E-E-----E-EeeccCCeEEEEEEecCCEEEEEe-CCCc
Q 046773 295 EFVGRVRVTSHES--AVACT-SSRVITFDLRNQGM------V-L-----G-ERGYGRGLYVTSVDVNAEAYIVVE-NREL 357 (453)
Q Consensus 295 ~~v~~v~~s~~~~--~vas~-d~tIrlWDl~t~~~------~-~-----~-~~g~~~~~~v~~~~~~g~~l~s~s-~dg~ 357 (453)
..+.+++|+|++. ++++. +++|++||+..... + . . .........-.+|+++|+.+++++ .++
T Consensus 155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~- 233 (361)
T 3scy_A 155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG- 233 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC-
T ss_pred CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC-
Confidence 4467899999874 34443 57899999876431 1 1 1 112222333456888888776666 466
Q ss_pred cccCcceEEEEEcCCCee--EEEEEecC---CCeeEEEEeeCCCeEEEEe-C--CeEEEEECC--CCe--EEEEecccCC
Q 046773 358 ENQNRRLAIVRRVDTFEE--VCRFSLRA---DRNVNVMGCMNQGYALMCV-E--GVIRVWEVE--GGE--YMYSFRERIG 425 (453)
Q Consensus 358 ~~~~~~~i~Iw~~~tg~~--v~~l~~~~---~~v~~~~~~~~~~~lls~s-~--~tIrlWD~~--tG~--~l~tL~gh~~ 425 (453)
.+++|++++++. +..+...+ .....+.++|++++++++. + ++|+|||+. +|+ .+..+.. ..
T Consensus 234 ------~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~ 306 (361)
T 3scy_A 234 ------TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GI 306 (361)
T ss_dssp ------EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SS
T ss_pred ------eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CC
Confidence 999999988753 33333222 3356888999999886544 3 799999995 565 4555543 22
Q ss_pred ceEE--EEecCCCEEEEE--eCCcEEEEecC
Q 046773 426 EEVI--AFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 426 ~~V~--a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
. +. +|+||+++|+++ .+++|.||++.
T Consensus 307 ~-~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 307 H-PRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp C-CCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred C-CceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2 33 789999988766 67999997653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-16 Score=167.42 Aligned_cols=272 Identities=10% Similarity=0.015 Sum_probs=167.2
Q ss_pred EEEEEecC--CEEEEEeC---------CCcEEEEECCCCeEE--EEecCCCCCccccccceEEE--EEEcCCeEEEEeCC
Q 046773 147 CRCLTLSD--LYLACGFA---------DGAVRLFDLTTRLHV--RTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLD 211 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~---------D~TIrlWD~~tg~~~--~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D 211 (453)
+.+++||+ ++||+++. |++|+|||+.+|+++ +.+.. .+.. +++||+.||+++ |
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~-----------~~~~~~~SPDG~~la~~~-~ 129 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPR-----------PIQYLCWSPVGSKLAYVY-Q 129 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCS-----------SBCCEEECSSTTCEEEEE-T
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCc-----------ccccceECCCCCEEEEEE-C
Confidence 45788875 68998876 799999999999874 23321 1222 455688999986 7
Q ss_pred CCEEEEEeecCC-cceEE--eeeccee-------------cCceEEEEeCCCceeeEEEEeeCCC---------------
Q 046773 212 GDIHVAVIDDVA-NETRT--AHFGSVM-------------DDGVLIDFTGCSRYWVGLYAGLAGR--------------- 260 (453)
Q Consensus 212 ~tIkvWd~~~~g-~~~~~--~~~~~v~-------------~~~~~v~Fs~dg~~~~~LaSgS~D~--------------- 260 (453)
++|++|++.+ | ...+. ++...+. .....++|||||++ ||+++.|.
T Consensus 130 ~~i~~~~~~~-g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~---la~~~~d~~~~~~~~~~~~~~~~ 205 (719)
T 1z68_A 130 NNIYLKQRPG-DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF---LAYAEFNDTDIPVIAYSYYGDEQ 205 (719)
T ss_dssp TEEEEESSTT-SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE---EEEEEEECTTSCEEEEEECCSSS
T ss_pred CeEEEEeCCC-CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCE---EEEEEECCCCCceEEeeccCCCC
Confidence 8999999976 4 11111 1111111 00024899999997 66776552
Q ss_pred -------------------eEEEeeCCCCcE---EecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEE--cC---
Q 046773 261 -------------------AFHIWDRQAEEV---FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVAC--TS--- 313 (453)
Q Consensus 261 -------------------tIrvWD~~tg~~---~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas--~d--- 313 (453)
+|+|||+++++. +. +..+ ..+.+|...+.+++|+|++.++.+ ..
T Consensus 206 ~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~ 276 (719)
T 1z68_A 206 YPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE---VPVP------AMIASSDYYFSWLTWVTDERVCLQWLKRVQN 276 (719)
T ss_dssp SCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE---CCCC------HHHHTSCEEEEEEEESSSSEEEEEEEESSTT
T ss_pred CccceeecCCCCCCCCCeeEEEEEECCCCCccceeE---ccCC------ccCCCCcceEEEeEEeCCCeEEEEEeccccC
Confidence 889999998763 11 0000 123456778899999999865543 22
Q ss_pred -CcEEEEE----CCCCceEEEE----eeccCCeE-----EEEEEecCCEEEEEe--CCCccccCcceEEEEEcCCCeeEE
Q 046773 314 -SRVITFD----LRNQGMVLGE----RGYGRGLY-----VTSVDVNAEAYIVVE--NRELENQNRRLAIVRRVDTFEEVC 377 (453)
Q Consensus 314 -~tIrlWD----l~t~~~~~~~----~g~~~~~~-----v~~~~~~g~~l~s~s--~dg~~~~~~~~i~Iw~~~tg~~v~ 377 (453)
..|.+|| +.++++.... .+|...+. ...|+++|+.++..+ .++ ...+.+|+.++++ ..
T Consensus 277 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g-----~~~l~~~~~~~~~-~~ 350 (719)
T 1z68_A 277 VSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG-----YKHIHYIKDTVEN-AI 350 (719)
T ss_dssp EEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS-----CEEEEEESSCSTT-CE
T ss_pred eEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC-----ceEEEEEECCCCc-eE
Confidence 2488999 8887553222 23332222 356889998766533 344 2245555666665 34
Q ss_pred EEEecCCCeeEEEEeeCCCeEEEEe-C-----CeEEEEECCC--Ce-EEEEe----cccCCceEE--EEecCCCEEEE-E
Q 046773 378 RFSLRADRNVNVMGCMNQGYALMCV-E-----GVIRVWEVEG--GE-YMYSF----RERIGEEVI--AFVGDDRHVAA-S 441 (453)
Q Consensus 378 ~l~~~~~~v~~~~~~~~~~~lls~s-~-----~tIrlWD~~t--G~-~l~tL----~gh~~~~V~--a~s~d~~~las-g 441 (453)
.++.+...+..+.++ +++.++..+ . ++++||.+.. |. ....| .+|... +. +|+||+++|+. .
T Consensus 351 ~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~-~~~~~~s~dg~~l~~~~ 428 (719)
T 1z68_A 351 QITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQ-YYTASFSDYAKYYALVC 428 (719)
T ss_dssp ECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBC-BEEEEECGGGSSEEEEE
T ss_pred ecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCc-eEEEEECCCCCEEEEEc
Confidence 454444446667777 888777554 2 6789998764 42 12333 335444 43 78899987763 3
Q ss_pred -e--CCcEEEEec
Q 046773 442 -C--GTNIHLWDF 451 (453)
Q Consensus 442 -~--D~~IklWDl 451 (453)
. ...+.+||+
T Consensus 429 s~~~~p~~~l~d~ 441 (719)
T 1z68_A 429 YGPGIPISTLHDG 441 (719)
T ss_dssp CCBSSCEEEEECS
T ss_pred CCCCCCeEEEEEC
Confidence 2 257888886
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-13 Score=130.85 Aligned_cols=259 Identities=12% Similarity=0.017 Sum_probs=154.9
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCc
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVAN 224 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~ 224 (453)
+.+++|++ +++++.+.++.++++ ++.....+..+.. ++ -.+++|.+||.++ |
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~---~~~~~~~~~~~~~---~~------------------~~~~~i~~~d~~~-g- 79 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGN---SFDSKFVYQQRGL---GP------------------IEEDTILVIDPNN-A- 79 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTT---SBCTTSCBSCGGG---CS------------------CCSCCEEEECTTT-C-
T ss_pred ceEEEECCCCCEEEEeCCCCeEEee---ccCcceeeccccc---cc------------------ccCCcEEEEECCC-C-
Confidence 78899985 688999888654433 3332223322111 00 0245566666554 3
Q ss_pred ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc--EE-ecccccCCcceeeeeeeeeeccceeEEE
Q 046773 225 ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VF-VGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 225 ~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~-~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
..++.-..........|+|+|+|+. +++.+.+++|++||..... .. .+.... +. .-.++......|+
T Consensus 80 ~~~~~~~~~~~~~p~gia~d~~g~l---~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~-~g------~~~~~~~~P~~ia 149 (329)
T 3fvz_A 80 EILQSSGKNLFYLPHGLSIDTDGNY---WVTDVALHQVFKLDPHSKEGPLLILGRSMQ-PG------SDQNHFCQPTDVA 149 (329)
T ss_dssp CEEEEECTTTCSSEEEEEECTTSCE---EEEETTTTEEEEECTTCSSCCSEEESBTTB-CC------CSTTCCSSEEEEE
T ss_pred eEEeccCCCccCCceEEEECCCCCE---EEEECCCCEEEEEeCCCCeEEEEEecccCC-CC------CCccccCCCcEEE
Confidence 1111100000011124789999985 5677788999999987652 11 110000 00 0012334567899
Q ss_pred EcC-Cc-eEEEEc--CCcEEEEECCCCceEEEEeeccC----------CeEEEEEEec-CCEEEEEeCCCccccCcceEE
Q 046773 302 VTS-HE-SAVACT--SSRVITFDLRNQGMVLGERGYGR----------GLYVTSVDVN-AEAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 302 ~s~-~~-~~vas~--d~tIrlWDl~t~~~~~~~~g~~~----------~~~v~~~~~~-g~~l~s~s~dg~~~~~~~~i~ 366 (453)
|+| ++ ++++.. +.+|++||. ++..+......+. ...-.+++++ +..+++.+.++ .|+
T Consensus 150 ~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~-------~I~ 221 (329)
T 3fvz_A 150 VEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG-------RIQ 221 (329)
T ss_dssp ECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT-------EEE
T ss_pred EeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC-------EEE
Confidence 998 55 455553 578999994 5555544421111 1223456777 55556656666 899
Q ss_pred EEEcCCCeeEEEEEec--CCCeeEEEEeeCCCeEEEEe--------C-CeEEEEECCCCeEEEEec---ccCCceEE--E
Q 046773 367 VRRVDTFEEVCRFSLR--ADRNVNVMGCMNQGYALMCV--------E-GVIRVWEVEGGEYMYSFR---ERIGEEVI--A 430 (453)
Q Consensus 367 Iw~~~tg~~v~~l~~~--~~~v~~~~~~~~~~~lls~s--------~-~tIrlWD~~tG~~l~tL~---gh~~~~V~--a 430 (453)
+|+.++|+.+..+... ...+..+.++| +.++... . .+|++||+.+|+.+.++. ++... .. +
T Consensus 222 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~-p~~ia 298 (329)
T 3fvz_A 222 CFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDM-PHDIV 298 (329)
T ss_dssp EEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSS-EEEEE
T ss_pred EEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCC-eeEEE
Confidence 9999999888877433 34466677766 3333322 2 599999999999999984 56555 55 6
Q ss_pred EecCCCEEEEE-eCCcEEEEecC
Q 046773 431 FVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 431 ~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++|||..+++. .+++|++|++.
T Consensus 299 ~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 299 ASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ECTTSEEEEEESSSCCEEEEEEE
T ss_pred ECCCCCEEEEECCCCEEEEEeCC
Confidence 78999777887 89999999863
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-13 Score=134.27 Aligned_cols=260 Identities=13% Similarity=0.039 Sum_probs=152.6
Q ss_pred EEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeC-CCC--EEEEEeecCC-cceEE-eeecceecCceE
Q 046773 166 VRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATL-DGD--IHVAVIDDVA-NETRT-AHFGSVMDDGVL 240 (453)
Q Consensus 166 IrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~-D~t--IkvWd~~~~g-~~~~~-~~~~~v~~~~~~ 240 (453)
...+|..+|.+++.|..|.......+... .++++||+.|++++. |++ |.+||+.+ + ...+. .+...+ ..
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~-~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~~lt~~~~~~~----~~ 85 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQ-KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-QVATQLTEGRGDNT----FG 85 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTS-CCBCTTSCEEEEEECTTSSCEEEEEETTT-CEEEECCCSSCBCS----SS
T ss_pred eEEecCCCCcceEEecCCcccccchhhcC-ccCCCCCCEEEEEEcCCCCceEEEEeCCC-CceEEeeeCCCCCc----cc
Confidence 34678899999999987653211100000 124567889999887 776 55566655 4 11111 111111 12
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE--EEcCCceEEEE-------
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV--RVTSHESAVAC------- 311 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v--~~s~~~~~vas------- 311 (453)
+.|+|||+. |+.++.|.+|.+||+++++... ....+...+... .+++++..+++
T Consensus 86 ~~~spdg~~---l~~~~~~~~l~~~d~~~g~~~~--------------~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~ 148 (388)
T 3pe7_A 86 GFLSPDDDA---LFYVKDGRNLMRVDLATLEENV--------------VYQVPAEWVGYGTWVANSDCTKLVGIEIRRED 148 (388)
T ss_dssp CEECTTSSE---EEEEETTTEEEEEETTTCCEEE--------------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred eEEcCCCCE---EEEEeCCCeEEEEECCCCccee--------------eeechhhcccccceeECCCCCeeccccccCcc
Confidence 589999997 7788889999999999988321 011122223222 23666654432
Q ss_pred -----------------cCCcEEEEECCCCceEEEEeeccCCeEEEEEEe-cCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 312 -----------------TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDV-NAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 312 -----------------~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
.+..|.+||+.+++. ..+..+.....-.+++| +|+.++..+.+. .+.....+.+++.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~-~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 149 WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGP-HDLVDARMWLINEDGT 226 (388)
T ss_dssp CCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSC-TTTSSCSEEEEETTSC
T ss_pred cccccccchhhhhhccCCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecC-CCCCcceEEEEeCCCC
Confidence 125799999999864 33323333344566888 888887776532 1111224555565554
Q ss_pred eeEEEEEecCC--CeeEEEEeeCCCeEEEEeC---C---eEEEEECCCCe--EEEEecccCCceEE-----EEecCCCEE
Q 046773 374 EEVCRFSLRAD--RNVNVMGCMNQGYALMCVE---G---VIRVWEVEGGE--YMYSFRERIGEEVI-----AFVGDDRHV 438 (453)
Q Consensus 374 ~~v~~l~~~~~--~v~~~~~~~~~~~lls~s~---~---tIrlWD~~tG~--~l~tL~gh~~~~V~-----a~s~d~~~l 438 (453)
+ +..+..+.. .+....++|++++++..+. . +|.+||+++|+ .+..+.++... .. +|+|||+.|
T Consensus 227 ~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~-~~~~~~~~~spdg~~l 304 (388)
T 3pe7_A 227 N-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHL-MSNYDGSLMVGDGSDA 304 (388)
T ss_dssp C-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEE-EECTTSSEEEEEECCC
T ss_pred c-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceee-eecCCCCeEccCCCcc
Confidence 3 333333332 3556789999998865442 2 49999999997 45555552111 11 689999988
Q ss_pred EEE----------eCCcEEEEecC
Q 046773 439 AAS----------CGTNIHLWDFG 452 (453)
Q Consensus 439 asg----------~D~~IklWDl~ 452 (453)
+.. .+..|++||+.
T Consensus 305 ~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 305 PVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp ------------CCCCEEEEEETT
T ss_pred eeEeeeccccccCCCCEEEEEecc
Confidence 743 35689999974
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=156.89 Aligned_cols=232 Identities=9% Similarity=-0.011 Sum_probs=148.7
Q ss_pred EEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceec-CceEEEEeCCCceeeEEEEeeCCC---------eEE
Q 046773 198 IIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMD-DGVLIDFTGCSRYWVGLYAGLAGR---------AFH 263 (453)
Q Consensus 198 i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~-~~~~v~Fs~dg~~~~~LaSgS~D~---------tIr 263 (453)
++|. +..|+++ |++|++||+.+ | ...+..|...... ....++|||||++ |+.++.|+ .+.
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~---l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEY-GNSSVFLENSTFDEFGHSINDYSISPDGQF---ILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTT-CCEEEEECTTTTTTCCSCCCEEEECTTSSE---EEEEEEEEECSSSCEEEEEE
T ss_pred cEECCCCcEEEEc--CCcEEEEECCC-CceEEEEechhhhhhcccccceEECCCCCE---EEEEECCeeeEEEccceEEE
Confidence 5554 5567765 99999999987 5 2233333322111 0112689999997 56667664 456
Q ss_pred EeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE-EcCCcEEEEECCCCceEEE-EeeccCCe----
Q 046773 264 IWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA-CTSSRVITFDLRNQGMVLG-ERGYGRGL---- 337 (453)
Q Consensus 264 vWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va-s~d~tIrlWDl~t~~~~~~-~~g~~~~~---- 337 (453)
|||+++|++. .|..|...+..++|||++..++ +.++.|.+||+.++.+... ..++....
T Consensus 96 ~~d~~~~~~~---------------~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~ 160 (740)
T 4a5s_A 96 IYDLNKRQLI---------------TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGI 160 (740)
T ss_dssp EEETTTTEEC---------------CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred EEECCCCcEE---------------EcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCc
Confidence 9999999842 2445667788999999986444 4678999999998765322 12322111
Q ss_pred -------------EEEEEEecCCEEEEEeCCCccc-----------------------------cCcceEEEEEcCC---
Q 046773 338 -------------YVTSVDVNAEAYIVVENRELEN-----------------------------QNRRLAIVRRVDT--- 372 (453)
Q Consensus 338 -------------~v~~~~~~g~~l~s~s~dg~~~-----------------------------~~~~~i~Iw~~~t--- 372 (453)
....++|||+.|+.++.|.... ....++.|||+++
T Consensus 161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred ccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence 1156899999999887543100 0112578899988
Q ss_pred Ce--eEEEEEe------cCCCeeEEEEeeCCCeEEEEeC-----CeEEEEECCCCe----EEEE--e--cccCCceEE--
Q 046773 373 FE--EVCRFSL------RADRNVNVMGCMNQGYALMCVE-----GVIRVWEVEGGE----YMYS--F--RERIGEEVI-- 429 (453)
Q Consensus 373 g~--~v~~l~~------~~~~v~~~~~~~~~~~lls~s~-----~tIrlWD~~tG~----~l~t--L--~gh~~~~V~-- 429 (453)
++ ....+.. +...+..+.++||++.++.... .+|++||+++|+ |... + .+|.++ |.
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~-v~~~ 319 (740)
T 4a5s_A 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGW-VGRF 319 (740)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSC-SSSS
T ss_pred CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCce-EccC
Confidence 74 2333432 4444778889999886554432 489999999998 6433 3 456554 32
Q ss_pred -----EEecCCCEEE-EE--eCC--cEEEEec
Q 046773 430 -----AFVGDDRHVA-AS--CGT--NIHLWDF 451 (453)
Q Consensus 430 -----a~s~d~~~la-sg--~D~--~IklWDl 451 (453)
+|+|||+.|+ .. .|+ .|.+||+
T Consensus 320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred cCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence 7899999876 44 344 5777775
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-12 Score=130.72 Aligned_cols=254 Identities=12% Similarity=0.058 Sum_probs=159.7
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEe----------CCCCEEEEEeecCC--cceE
Q 046773 162 ADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFAT----------LDGDIHVAVIDDVA--NETR 227 (453)
Q Consensus 162 ~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS----------~D~tIkvWd~~~~g--~~~~ 227 (453)
.|++|.+||..+++.+.++..+.. . .++| +++.|+.++ .|++|.+||..+ + +..+
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~--------p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t-~~~~~~i 97 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFN--------G--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK-LTFEKEI 97 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEE--------E--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-CCEEEEE
T ss_pred ccCeEEEEECCCCeEEEEecCCCC--------C--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC-CcEEEEE
Confidence 588999999999999988865321 1 4555 467787775 367899999876 3 2222
Q ss_pred Eeeecce--ecCceEEEEeCCCceeeEEEEeeC--CCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc
Q 046773 228 TAHFGSV--MDDGVLIDFTGCSRYWVGLYAGLA--GRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 228 ~~~~~~v--~~~~~~v~Fs~dg~~~~~LaSgS~--D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
....... ......++|+|||++ |+++.. +++|.|||+++++.+. ++..+.. ...+.+.
T Consensus 98 ~~~~~~~~~g~~p~~i~~spdg~~---l~v~n~~~~~~v~v~d~~~~~~~~--------------~~i~~~~-~~~v~~~ 159 (361)
T 2oiz_A 98 SLPPKRVQGLNYDGLFRQTTDGKF---IVLQNASPATSIGIVDVAKGDYVE--------------DVTAAAG-CWSVIPQ 159 (361)
T ss_dssp EECTTBCCBCCCGGGEEECTTSSE---EEEEEESSSEEEEEEETTTTEEEE--------------EEGGGTT-EEEEEEC
T ss_pred EcCccccccCCCcceEEECCCCCE---EEEECCCCCCeEEEEECCCCcEEE--------------EEecCCC-cceeEEc
Confidence 2221110 011123899999997 555553 6899999999988431 1000101 1124455
Q ss_pred CCc---eEEEEcCCcEEEEECCC-CceEEEEe----eccCCe-EEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 304 SHE---SAVACTSSRVITFDLRN-QGMVLGER----GYGRGL-YVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 304 ~~~---~~vas~d~tIrlWDl~t-~~~~~~~~----g~~~~~-~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
|.+ .++.+.|+++.+|+++. ++...... .+.... ....+++++..++..+.++ .+.++|+...+
T Consensus 160 p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~v~v~d~~~~~ 232 (361)
T 2oiz_A 160 PNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYG-------NVYSADFSGDE 232 (361)
T ss_dssp TTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTS-------EEEEEECSSSS
T ss_pred CCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCC-------eEEEEEecCCC
Confidence 533 45557789999999876 44331110 000000 0112356677777777777 88888886543
Q ss_pred --eEEEEEe----------cCCCeeEEEEeeCCCeEEEEe------------CCeEEEEECCCCeEEEEecccCCceEEE
Q 046773 375 --EVCRFSL----------RADRNVNVMGCMNQGYALMCV------------EGVIRVWEVEGGEYMYSFRERIGEEVIA 430 (453)
Q Consensus 375 --~v~~l~~----------~~~~v~~~~~~~~~~~lls~s------------~~tIrlWD~~tG~~l~tL~gh~~~~V~a 430 (453)
.+..+.. .+...+.++++++++++..+. +++|.+||+++++.+.+++.+. ..--+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia 311 (361)
T 2oiz_A 233 VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMT 311 (361)
T ss_dssp CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEE
T ss_pred ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEE
Confidence 1222221 122233467888888776542 1489999999999999998776 41238
Q ss_pred EecCCCEEEEEeCCcEEEEecC
Q 046773 431 FVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 431 ~s~d~~~lasg~D~~IklWDl~ 452 (453)
|+|||++|+++.+++|.|||..
T Consensus 312 ~spdg~~l~v~n~~~v~v~D~~ 333 (361)
T 2oiz_A 312 IDQQRNLMLTLDGGNVNVYDIS 333 (361)
T ss_dssp EETTTTEEEEECSSCEEEEECS
T ss_pred ECCCCCEEEEeCCCeEEEEECC
Confidence 8999999998833999999964
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-13 Score=140.61 Aligned_cols=199 Identities=11% Similarity=0.026 Sum_probs=134.8
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee--eeeeeeccceeEEEEcCCceEEE----E--
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW--RMLTEFTEFVGRVRVTSHESAVA----C-- 311 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w--~~l~~h~~~v~~v~~s~~~~~va----s-- 311 (453)
.+++++++.+ |++|+.|+ |+||+...-..... ...+....... .....+...|.+++|++++..++ +
T Consensus 41 ~lavs~~~~~---l~~~~~dg-v~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 41 LLAVSNKYGL---VFAGGASG-LQIFPTKNLLIQNK-PGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CEEEETTTTE---EEEEETTE-EEEEEHHHHCCCCC-TTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred EEEEecCCCE---EEEECCCE-EEEEEchHhhhhcc-cccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4789998875 67888777 99988532110000 00000000000 01123456799999999875444 3
Q ss_pred cCCcEEEEECCCC--------ce---EEEEeeccCCeEEEEEEec-CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 312 TSSRVITFDLRNQ--------GM---VLGERGYGRGLYVTSVDVN-AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 312 ~d~tIrlWDl~t~--------~~---~~~~~g~~~~~~v~~~~~~-g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
.|++|+|||++++ +. +....+|...+...+|+|+ ++.+++++.|+ +++|||+.+++.+...
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg-------~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG-------SIAVLQVTETVKVCAT 188 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS-------CEEEEEESSSEEEEEE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC-------eEEEEEcCCCcceeec
Confidence 3579999999764 11 2223556666655566666 67899999999 9999999998777666
Q ss_pred EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCC-------ceEE--EEecCCCEEEEE--eCC---
Q 046773 380 SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIG-------EEVI--AFVGDDRHVAAS--CGT--- 444 (453)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~-------~~V~--a~s~d~~~lasg--~D~--- 444 (453)
..|...+..+.+++++.++++++. ++|++||++ ++...++..|.. . |. ++++++.++++. .|+
T Consensus 189 ~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~-v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVR-VLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEE-EEEEEEEETTEEEEEEEETTCCSS
T ss_pred cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCcee-EEEEEEecCceEEEEEccCCCccC
Confidence 667777999999999999998887 999999998 777777765532 3 66 455777777543 453
Q ss_pred ---cEEEEecC
Q 046773 445 ---NIHLWDFG 452 (453)
Q Consensus 445 ---~IklWDl~ 452 (453)
.+++||+.
T Consensus 267 ~~~~v~i~~l~ 277 (434)
T 2oit_A 267 TSPDVVMALLP 277 (434)
T ss_dssp SCCEEEEEECC
T ss_pred CCCceEEEEec
Confidence 38999974
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-13 Score=134.71 Aligned_cols=272 Identities=9% Similarity=-0.009 Sum_probs=163.7
Q ss_pred EEEEEecC--CEEEEEeCC---CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLSD--LYLACGFAD---GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D---~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~ 221 (453)
+.+++||+ ++||..+.+ ..|.+||+.+++..+...++.... ....++++|+.|++.+.++.|++||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~------~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNT------FGGFISTDERAFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCT------TTCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCcc------ccceECCCCCEEEEEEcCCcEEEEECCC
Confidence 34567765 677766543 478999999998755443321110 0012456788999999999999999877
Q ss_pred CC-cceEE-eeecceecCceEE----------------EEeCCCceeeEEEEe-----eCCCeEEEeeCCCCcEEecccc
Q 046773 222 VA-NETRT-AHFGSVMDDGVLI----------------DFTGCSRYWVGLYAG-----LAGRAFHIWDRQAEEVFVGGDL 278 (453)
Q Consensus 222 ~g-~~~~~-~~~~~v~~~~~~v----------------~Fs~dg~~~~~LaSg-----S~D~tIrvWD~~tg~~~~g~~l 278 (453)
+ ...+. .+.+ ...++..| +|+|||+++ +.. ..+..|.+||+++++..
T Consensus 112 -~~~~~~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~---~~~~~~~~~~~~~l~~~d~~~g~~~----- 181 (396)
T 3c5m_A 112 -LEEQVIYTVDEE-WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWE---KFAEFYHTNPTCRLIKVDIETGELE----- 181 (396)
T ss_dssp -CCEEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH---HHHHHHHTCCCEEEEEEETTTCCEE-----
T ss_pred -CCcEEEEecccc-cCCCCCEEEeccCCccccccccccccCCCCcce---eeeeeccCCCcceEEEEECCCCcEE-----
Confidence 4 22222 1222 11122222 457887752 222 45678999999998732
Q ss_pred cCCcceeeeeeeeeeccceeEEEEcC-Cce--EEEEcC------CcEEEEECCCCceEEEEeeccCC--eEEEEEEecCC
Q 046773 279 TDHNTVMGWRMLTEFTEFVGRVRVTS-HES--AVACTS------SRVITFDLRNQGMVLGERGYGRG--LYVTSVDVNAE 347 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~~v~~v~~s~-~~~--~vas~d------~tIrlWDl~t~~~~~~~~g~~~~--~~v~~~~~~g~ 347 (453)
.+..+...+..+.|+| ++. +..+.+ ..|.+||+.++.. ..+..+... ....+|+|+|+
T Consensus 182 ----------~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~ 250 (396)
T 3c5m_A 182 ----------VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGS 250 (396)
T ss_dssp ----------EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSS
T ss_pred ----------eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCC
Confidence 1223445678889998 553 333432 3588899986542 222222112 22346778888
Q ss_pred EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee-CCCeEEEEe----------------C-CeEEEE
Q 046773 348 AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM-NQGYALMCV----------------E-GVIRVW 409 (453)
Q Consensus 348 ~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~-~~~~lls~s----------------~-~tIrlW 409 (453)
.++.++.+.. .....+.+|++.+++....... +. .. ..+++ +++.++.++ . ..|.+|
T Consensus 251 ~l~~~~~~~~--~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~ 325 (396)
T 3c5m_A 251 AMAYVSYFKG--QTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVL 325 (396)
T ss_dssp CEEEEEEETT--TCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEE
T ss_pred EEEEEecCCC--CccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEE
Confidence 8877765421 1112589999988865433222 22 33 77888 888766543 2 789999
Q ss_pred ECCCCeEEEEecccCCce----------E--EEEecCCCEEEEE--eCCcEEEEec
Q 046773 410 EVEGGEYMYSFRERIGEE----------V--IAFVGDDRHVAAS--CGTNIHLWDF 451 (453)
Q Consensus 410 D~~tG~~l~tL~gh~~~~----------V--~a~s~d~~~lasg--~D~~IklWDl 451 (453)
|+.+++. ..|..+.... + -+|+||++.|+.. .++...||.+
T Consensus 326 d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 326 NTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp ETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 9998875 4455554310 1 2789999988765 4666667654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-12 Score=128.24 Aligned_cols=246 Identities=7% Similarity=-0.034 Sum_probs=145.8
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECC-CCeEEEEecCCCCCccccccceEEEEEEcCCe--EEEEe------------
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLT-TRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQ--LIFAT------------ 209 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~-tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~--LasgS------------ 209 (453)
+..++|++ ++|++++.+ +|++||+. +|++.+... +.... .+. .+ ++..+|+. +++++
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-~~~~g-~~~--~~-~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-HPIGG-HPR--AN-DADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE-EECCS-SGG--GG-CTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE-eecCC-CCc--cE-EECCCCCEEEEEEecCCcceeccceee
Confidence 45788875 689999998 99999998 898765443 11000 011 11 12334663 44543
Q ss_pred -CCCCEEEEEeecCC-c-ceEEeeecceecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCC-CCcEEecccccCCcce
Q 046773 210 -LDGDIHVAVIDDVA-N-ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQ-AEEVFVGGDLTDHNTV 284 (453)
Q Consensus 210 -~D~tIkvWd~~~~g-~-~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~-tg~~~~g~~l~~~~~v 284 (453)
.++++++|+++..| + ..+.............++|+|||++ |+++. .+.+|++||++ +|+...-
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~---l~~~~~~~~~v~~~~~~~~g~~~~~--------- 183 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY---LYSADLTANKLWTHRKLASGEVELV--------- 183 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE---EEEEETTTTEEEEEEECTTSCEEEE---------
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE---EEEEcCCCCEEEEEEECCCCCEEEe---------
Confidence 68999999997434 1 1222210000011224899999997 44444 57899999998 7773210
Q ss_pred eeeeeee--eeccceeEEEEcCCce--EEEEc-CCcEEEEECC--CCceEE---EE-e------eccC------CeEEEE
Q 046773 285 MGWRMLT--EFTEFVGRVRVTSHES--AVACT-SSRVITFDLR--NQGMVL---GE-R------GYGR------GLYVTS 341 (453)
Q Consensus 285 ~~w~~l~--~h~~~v~~v~~s~~~~--~vas~-d~tIrlWDl~--t~~~~~---~~-~------g~~~------~~~v~~ 341 (453)
..+. .|...+..++|+|++. ++++. +++|++|++. +++... .. . +|.. ...-.+
T Consensus 184 ---~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 260 (365)
T 1jof_A 184 ---GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp ---EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred ---eeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEE
Confidence 0111 1234567899999873 44454 5789999765 565422 11 1 1110 133356
Q ss_pred -EEecCCEEEEEeCCCccccCcceEEEEEcC-CCeeEEE---EEecCCCeeEEEEee---CCCeEEEEeC--CeEEEEEC
Q 046773 342 -VDVNAEAYIVVENRELENQNRRLAIVRRVD-TFEEVCR---FSLRADRNVNVMGCM---NQGYALMCVE--GVIRVWEV 411 (453)
Q Consensus 342 -~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~---l~~~~~~v~~~~~~~---~~~~lls~s~--~tIrlWD~ 411 (453)
|+|+|+.+++++.+.. .....+++||+++ +++.... +.........++++| ++++++++.. ++|+||++
T Consensus 261 ~~spdG~~l~v~~~~~~-~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 261 ALTFSGKYMFASSRANK-FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EECTTSSEEEEEEEESS-TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EECCCCCEEEEECCCCC-CCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 7788888776554330 0011279999986 6654332 222334456788899 7999887764 89999999
Q ss_pred CCC
Q 046773 412 EGG 414 (453)
Q Consensus 412 ~tG 414 (453)
...
T Consensus 340 ~~~ 342 (365)
T 1jof_A 340 KDE 342 (365)
T ss_dssp ETT
T ss_pred chh
Confidence 876
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-11 Score=120.81 Aligned_cols=257 Identities=12% Similarity=0.040 Sum_probs=146.4
Q ss_pred EEEEEecCCEEEEE---------eCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCC---C
Q 046773 147 CRCLTLSDLYLACG---------FADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLD---G 212 (453)
Q Consensus 147 v~~lafs~~~LaSG---------S~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D---~ 212 (453)
+..++|++++||.. +++.+|.+||+.+++.. .|. .+..++| ||+.|++.+.+ +
T Consensus 17 ~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~------------~~~~~~~SpDg~~la~~~~~~~~~ 83 (347)
T 2gop_A 17 LSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FIE------------NATMPRISPDGKKIAFMRANEEKK 83 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EEE------------SCEEEEECTTSSEEEEEEEETTTT
T ss_pred cccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ecc------------cCCCeEECCCCCEEEEEEeccCCC
Confidence 45566677776653 34788999999999854 441 1333444 57889998765 3
Q ss_pred C--EEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeC---------------------------CCeE
Q 046773 213 D--IHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLA---------------------------GRAF 262 (453)
Q Consensus 213 t--IkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~---------------------------D~tI 262 (453)
. |.+|++++ | ...+..+.. + ..++|+|||+. |+.++. ...|
T Consensus 84 ~~~l~~~~~~~-g~~~~l~~~~~-~----~~~~wspdg~~---l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 84 VSEIWVADLET-LSSKKILEAKN-I----RSLEWNEDSRK---LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EEEEEEEETTT-TEEEEEEEESE-E----EEEEECTTSSE---EEEEEECCCC---------CCCC---------CEEEE
T ss_pred cceEEEEECCC-CceEEEEcCCC-c----cceeECCCCCE---EEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence 4 55556655 4 222222221 2 24799999997 444442 2579
Q ss_pred EEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc-C------C-cEEEEECCCCceEEEEeecc
Q 046773 263 HIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT-S------S-RVITFDLRNQGMVLGERGYG 334 (453)
Q Consensus 263 rvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~-d------~-tIrlWDl~t~~~~~~~~g~~ 334 (453)
.+||+.+++... .+.. . .+..+.++|++++.++. + . ..+||.+.+++ +..+..+
T Consensus 155 ~~~d~~~~~~~~--------------~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~- 216 (347)
T 2gop_A 155 WIFDTESEEVIE--------------EFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK- 216 (347)
T ss_dssp EEEETTTTEEEE--------------EEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-
T ss_pred EEEECCCCeEEe--------------eecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCc-eEEeccC-
Confidence 999999887421 1223 2 57788999988433332 2 1 44565555443 3333222
Q ss_pred CCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeE-EEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 335 RGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVN-VMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 335 ~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~-~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
..+.+++|+|+.++.++.+..... ....+||.+++++.......++..+.. +.++ ++ .+++++. ++++|| +.
T Consensus 217 --~~~~~~spdg~~l~~~~~~~~~~~-~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 217 --VSFYAVDSDGERILLYGKPEKKYM-SEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp --ESEEEEEECSSCEEEEECCSSSCC-CSSCEEEEECSSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred --cceeeECCCCCEEEEEEccccCCc-cccceEEEECCCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 223455999998888775541100 012344444455433222222333554 6666 65 5455555 899999 88
Q ss_pred CCeEEEEecccCCceEEEEecCCCEEEEE-eCCcE-EEEec
Q 046773 413 GGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNI-HLWDF 451 (453)
Q Consensus 413 tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~I-klWDl 451 (453)
+|+....+ .+.+. |.+++.++++++++ .+++. +||.+
T Consensus 291 ~g~~~~~~-~~~~~-v~~~~~s~~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 291 DGEIKPIA-KGRHW-IMGFDVDEIVVYLKETATRLRELFTW 329 (347)
T ss_dssp SSSEEEEE-CSSSE-EEEEEESSSEEEEEECSSSCCEEEEE
T ss_pred CCceEEEe-cCCCe-EEeeeeeCcEEEEEcCCCChHHheEe
Confidence 77765444 34555 77544222666666 55554 77754
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-10 Score=110.14 Aligned_cols=237 Identities=9% Similarity=0.026 Sum_probs=143.6
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEEeC-CCCEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFATL-DGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~LasgS~-D~tIkvWd~~ 220 (453)
..++++++ +++++.+.+++|++||.+ ++.++.+..... . ......+.+++++ +..+++... ++.|++||.+
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~-~-~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~ 108 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK-R-DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 108 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS-S-TTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC-C-cccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC
Confidence 78899975 688888999999999987 777777742110 0 0011245678883 334444433 8899999843
Q ss_pred cCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE
Q 046773 221 DVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 221 ~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
| ..+......-......++|+|+|+. +++.+.++.|.+||........- ...++...+..+
T Consensus 109 --g-~~~~~~~~~~~~~~~~i~~~~~g~l---~v~~~~~~~i~~~~~~g~~~~~~-------------~~~~~~~~p~~i 169 (286)
T 1q7f_A 109 --G-QFVRKFGATILQHPRGVTVDNKGRI---IVVECKVMRVIIFDQNGNVLHKF-------------GCSKHLEFPNGV 169 (286)
T ss_dssp --S-CEEEEECTTTCSCEEEEEECTTSCE---EEEETTTTEEEEECTTSCEEEEE-------------ECTTTCSSEEEE
T ss_pred --C-cEEEEecCccCCCceEEEEeCCCCE---EEEECCCCEEEEEcCCCCEEEEe-------------CCCCccCCcEEE
Confidence 3 2221111000011224899999985 45667789999999653322110 001223456789
Q ss_pred EEcCCceEE-EEc-CCcEEEEECCCCceEEEEeecc--CCeEEEEEEecCCEEEEEeCC-CccccCcceEEEEEcCCCee
Q 046773 301 RVTSHESAV-ACT-SSRVITFDLRNQGMVLGERGYG--RGLYVTSVDVNAEAYIVVENR-ELENQNRRLAIVRRVDTFEE 375 (453)
Q Consensus 301 ~~s~~~~~v-as~-d~tIrlWDl~t~~~~~~~~g~~--~~~~v~~~~~~g~~l~s~s~d-g~~~~~~~~i~Iw~~~tg~~ 375 (453)
++++++.+. +.. ++.|++||.. ++.+.....++ ....-.+++++|+.+++.+.+ + .|++|+. +++.
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~-------~i~~~~~-~g~~ 240 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNF-------NLTIFTQ-DGQL 240 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC-------EEEEECT-TSCE
T ss_pred EECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCE-------EEEEECC-CCCE
Confidence 999876544 433 5789999985 45544442222 223335567777766665444 3 7889985 4666
Q ss_pred EEEEEecCC--CeeEEEEeeCCCeEEEEeCCeEEEEECCCC
Q 046773 376 VCRFSLRAD--RNVNVMGCMNQGYALMCVEGVIRVWEVEGG 414 (453)
Q Consensus 376 v~~l~~~~~--~v~~~~~~~~~~~lls~s~~tIrlWD~~tG 414 (453)
+..+..+.. ....+++++++..+++..+++|++|+....
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 241 ISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred EEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcccc
Confidence 777765433 255778888776544533399999998653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-10 Score=115.85 Aligned_cols=269 Identities=7% Similarity=0.008 Sum_probs=159.7
Q ss_pred EEEecC--CEEEEEe----------CCCcEEEEECCCCeEEEEecCCCCCc-cccccceEEEEEEcCCeEEEEeC--CCC
Q 046773 149 CLTLSD--LYLACGF----------ADGAVRLFDLTTRLHVRTFRPQHSDR-LGQFSRAVSGIIITDSQLIFATL--DGD 213 (453)
Q Consensus 149 ~lafs~--~~LaSGS----------~D~TIrlWD~~tg~~~~tl~gh~~~~-~~~~s~~V~~i~f~g~~LasgS~--D~t 213 (453)
.++|++ ++|..++ .|++|.+||+.+++.++++..+.... .+.....+ ++..+|+.|+.+.. +++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i-~~spdg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLF-RQTTDGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGE-EECTTSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceE-EECCCCCEEEEECCCCCCe
Confidence 677875 5666665 37889999999999998875321100 00111111 13446888887764 688
Q ss_pred EEEEEeecCCcceEEe-eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC-CcEE-ecccccCCcceeeeeee
Q 046773 214 IHVAVIDDVANETRTA-HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA-EEVF-VGGDLTDHNTVMGWRML 290 (453)
Q Consensus 214 IkvWd~~~~g~~~~~~-~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t-g~~~-~g~~l~~~~~v~~w~~l 290 (453)
|.|||+++ + ..... .. + .....+.+.|+++. .+++.+.|+++.+|+.+. ++.. ..+. . ..+
T Consensus 133 v~v~d~~~-~-~~~~~~i~--~-~~~~~v~~~p~~~~--~~~~~~~dg~~~~v~~~~~g~~~~~~~~------~---~~~ 196 (361)
T 2oiz_A 133 IGIVDVAK-G-DYVEDVTA--A-AGCWSVIPQPNRPR--SFMTICGDGGLLTINLGEDGKVASQSRS------K---QMF 196 (361)
T ss_dssp EEEEETTT-T-EEEEEEGG--G-TTEEEEEECTTSSS--EEEEEETTSSEEEEEECTTSSEEEEEEC------C---CCS
T ss_pred EEEEECCC-C-cEEEEEec--C-CCcceeEEcCCCCe--eEEEECCCCcEEEEEECCCCcEeeeccc------c---ceE
Confidence 99999987 4 22211 10 0 01112567787743 256788899999999875 5532 1100 0 000
Q ss_pred eeeccceeE-EEEcCCceEEEEcCCcEEEEECCCCceEE--EEe--e----cc----CCeEEEEEEecCCEEEEEeC-CC
Q 046773 291 TEFTEFVGR-VRVTSHESAVACTSSRVITFDLRNQGMVL--GER--G----YG----RGLYVTSVDVNAEAYIVVEN-RE 356 (453)
Q Consensus 291 ~~h~~~v~~-v~~s~~~~~vas~d~tIrlWDl~t~~~~~--~~~--g----~~----~~~~v~~~~~~g~~l~s~s~-dg 356 (453)
.....++.. ..-+++..+..+.+++|.++|+.+.+... ... . .. ......+|+++++.+.++.. ++
T Consensus 197 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~ 276 (361)
T 2oiz_A 197 SVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG 276 (361)
T ss_dssp CTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred cCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence 000111100 01122334555566789999997654221 110 0 00 00012478888887766543 22
Q ss_pred cc-cc--CcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCC--eEEEEecccCCce-EEE
Q 046773 357 LE-NQ--NRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGG--EYMYSFRERIGEE-VIA 430 (453)
Q Consensus 357 ~~-~~--~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG--~~l~tL~gh~~~~-V~a 430 (453)
.. .. ...++.+||..+++.+.++..+. ...++++++++++.++..++|.|||++++ +.+.++..+-... ..+
T Consensus 277 ~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~ 354 (361)
T 2oiz_A 277 KEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQ 354 (361)
T ss_dssp CTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEE
T ss_pred CcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEE
Confidence 00 00 12378999999999999988776 88999999999877665599999999999 9999985554441 237
Q ss_pred EecCCC
Q 046773 431 FVGDDR 436 (453)
Q Consensus 431 ~s~d~~ 436 (453)
++|||+
T Consensus 355 ~~p~G~ 360 (361)
T 2oiz_A 355 FHPVGG 360 (361)
T ss_dssp ECCCSC
T ss_pred ecCCCC
Confidence 789986
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-11 Score=131.57 Aligned_cols=239 Identities=13% Similarity=0.029 Sum_probs=141.8
Q ss_pred EEEEEEecC--CEEE-----EEeCCCcEEEEECCCCeEE-EE-ecCCCCCccccccceEEEEEE--cCCeEEEEeCCCC-
Q 046773 146 TCRCLTLSD--LYLA-----CGFADGAVRLFDLTTRLHV-RT-FRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGD- 213 (453)
Q Consensus 146 ~v~~lafs~--~~La-----SGS~D~TIrlWD~~tg~~~-~t-l~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~t- 213 (453)
.+.+++||+ ++|| +|+.+.+|++||+++|+.+ .. +.+ .. ..+++| ||+.|++++.|.+
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~-~~---------~~~~~wspDg~~l~~~~~d~~~ 191 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG-GK---------YATPKWTPDSKGFYYEWLPTDP 191 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC-CT---------TCCCEECTTSSEEEEEECCCCT
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc-cc---------ccceEEecCCCEEEEEEecCCC
Confidence 378889986 5888 6677789999999999865 21 111 10 012444 6789999999887
Q ss_pred ------------EEEEEeecCCc-ceEEeeeccee-cCceEEEEeCCCceeeEEEEeeCCC----eEEEeeCCCCcEEec
Q 046773 214 ------------IHVAVIDDVAN-ETRTAHFGSVM-DDGVLIDFTGCSRYWVGLYAGLAGR----AFHIWDRQAEEVFVG 275 (453)
Q Consensus 214 ------------IkvWd~~~~g~-~~~~~~~~~v~-~~~~~v~Fs~dg~~~~~LaSgS~D~----tIrvWD~~tg~~~~g 275 (453)
|++|++.+ +. .........-. .....+.|||||++ |+..+.++ .|.+||..+++.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t-~~~~~~lv~~~~~~~~~~~~~~~SpDG~~---l~~~~~~~~~~~~l~~~~~~~~~~--- 264 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGT-EPSKDTVVHERTGDPTTFLQSDLSRDGKY---LFVYILRGWSENDVYWKRPGEKDF--- 264 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTS-CGGGCEEEECCCCCTTCEEEEEECTTSCC---EEEEEEETTTEEEEEEECTTCSSC---
T ss_pred CCccccCCCCCEEEEEECCC-CchhceEEEecCCCCEEEEEEEECCCCCE---EEEEEeCCCCceEEEEEcCCCCce---
Confidence 99999887 31 11111111000 00124789999998 44444444 677777666551
Q ss_pred ccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc----CCcEEEEECCCCce--EEEEeeccCCeEEEEEEecCCE-
Q 046773 276 GDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT----SSRVITFDLRNQGM--VLGERGYGRGLYVTSVDVNAEA- 348 (453)
Q Consensus 276 ~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~----d~tIrlWDl~t~~~--~~~~~g~~~~~~v~~~~~~g~~- 348 (453)
..|..+.+.+....+..+.+++.+. +..|.+||+.+++. ...+..+.....+..++++++.
T Consensus 265 ------------~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l 332 (695)
T 2bkl_A 265 ------------RLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHL 332 (695)
T ss_dssp ------------EEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEE
T ss_pred ------------EEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEE
Confidence 1222333333333333333444444 36799999988752 1222223323445666666655
Q ss_pred EEEEeCCCccccCcceEEEEEcC-CCeeEEEEEec-CCCeeEEEEeeCCCeEEE-EeC----CeEEEEECCCCeEEEEec
Q 046773 349 YIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLR-ADRNVNVMGCMNQGYALM-CVE----GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~-~~~v~~~~~~~~~~~lls-~s~----~tIrlWD~~tG~~l~tL~ 421 (453)
+++.+.++ ..+||.++ +++.+..+.+. ...+..+.+++++..++. .++ ++|++||+.+|+. ..|.
T Consensus 333 v~~~~~dg-------~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~ 404 (695)
T 2bkl_A 333 SLEYLKDA-------TSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWA 404 (695)
T ss_dssp EEEEEETT-------EEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEE
T ss_pred EEEEEECC-------EEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEe
Confidence 45566777 88888776 46666666655 333455556677766653 222 7999999999874 3443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-10 Score=109.57 Aligned_cols=230 Identities=12% Similarity=0.078 Sum_probs=143.8
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeee--cceecCceEEEE-eCCCceeeEEEEee-CCCeEEEee
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHF--GSVMDDGVLIDF-TGCSRYWVGLYAGL-AGRAFHIWD 266 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~--~~v~~~~~~v~F-s~dg~~~~~LaSgS-~D~tIrvWD 266 (453)
...+++++ ++.+++.+.++.|++||.+. . ...+.... ..-......++| +++|+. +++.. .++.|++||
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l---~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDI---IVTERSPTHQIQIYN 106 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEE---EEEECGGGCEEEEEC
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeE---EEEcCCCCCEEEEEC
Confidence 35667775 56677778899999999764 2 11111100 000011234788 577875 33443 388999999
Q ss_pred CCCCcEEecccccCCcceeeeeee-eeeccceeEEEEcCCceE-EEEc-CCcEEEEECCCCceEEEEe--eccCCeEEEE
Q 046773 267 RQAEEVFVGGDLTDHNTVMGWRML-TEFTEFVGRVRVTSHESA-VACT-SSRVITFDLRNQGMVLGER--GYGRGLYVTS 341 (453)
Q Consensus 267 ~~tg~~~~g~~l~~~~~v~~w~~l-~~h~~~v~~v~~s~~~~~-vas~-d~tIrlWDl~t~~~~~~~~--g~~~~~~v~~ 341 (453)
.+++.+. .+ ..+...+..+++++++.+ ++.. ++.|++||.. ++.+.... ++.....-.+
T Consensus 107 -~~g~~~~--------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 107 -QYGQFVR--------------KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp -TTSCEEE--------------EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEE
T ss_pred -CCCcEEE--------------EecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEE
Confidence 5565321 01 112245678999987654 4433 4789999975 44444332 2222333455
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC--CCeeEEEEeeCCCeEEEEeC-C-eEEEEECCCCeEE
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA--DRNVNVMGCMNQGYALMCVE-G-VIRVWEVEGGEYM 417 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~--~~v~~~~~~~~~~~lls~s~-~-tIrlWD~~tG~~l 417 (453)
++++++.+++.+.++ .|++|+.+ ++.+..+.... .....+++++++..+++... + .|++||. +|+.+
T Consensus 171 ~~~~g~l~v~~~~~~-------~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~ 241 (286)
T 1q7f_A 171 VNDKQEIFISDNRAH-------CVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLI 241 (286)
T ss_dssp ECSSSEEEEEEGGGT-------EEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEE
T ss_pred ECCCCCEEEEECCCC-------EEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEE
Confidence 667777666666677 89999974 55566664432 34677888888876666655 5 9999995 68888
Q ss_pred EEecccCCc-eEE--EEecCCCEEEEEeCCcEEEEecC
Q 046773 418 YSFRERIGE-EVI--AFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 418 ~tL~gh~~~-~V~--a~s~d~~~lasg~D~~IklWDl~ 452 (453)
.++..+... .+. +++|||+.+++..|++|+||++.
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 242 SALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp EEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred EEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcc
Confidence 888665432 133 67899987776678999999974
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-10 Score=124.82 Aligned_cols=233 Identities=12% Similarity=0.112 Sum_probs=146.2
Q ss_pred eEEEEEE--cCCeEEEEeCCC-----CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCe-----
Q 046773 194 AVSGIII--TDSQLIFATLDG-----DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRA----- 261 (453)
Q Consensus 194 ~V~~i~f--~g~~LasgS~D~-----tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~t----- 261 (453)
.+.+++| ||++||+++.++ +|+|||+++ | ..+........ ...++|+|||+. |+.++.|.+
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t-g-~~~~~~~~~~~--~~~~~wspDg~~---l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG-A-KELPDVLERVK--FSCMAWTHDGKG---MFYNAYPQQDGKSD 198 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT-T-EEEEEEEEEEC--SCCEEECTTSSE---EEEEECCCCSSCCS
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC-C-CCCcccccCcc--cceEEEEeCCCE---EEEEEECCcccccc
Confidence 3455555 577898876654 899999988 5 22221111110 113799999997 666777766
Q ss_pred -----------EEEeeCCCCc---EEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc-----CCcEEEEE
Q 046773 262 -----------FHIWDRQAEE---VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT-----SSRVITFD 320 (453)
Q Consensus 262 -----------IrvWD~~tg~---~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~-----d~tIrlWD 320 (453)
|++|++.+++ .+.. ....|..++..+.++|++. ++++. +..|.+||
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~-------------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCA-------------EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEE-------------CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred ccccccCCCCEEEEEECCCCcccceEEe-------------ccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence 9999999876 2210 0112344567788998874 33343 35799999
Q ss_pred CCC------Cc-eEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe--eEEEEEecCC--CeeEE
Q 046773 321 LRN------QG-MVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE--EVCRFSLRAD--RNVNV 389 (453)
Q Consensus 321 l~t------~~-~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~--~v~~l~~~~~--~v~~~ 389 (453)
+.+ +. ....+..+.... ...++++|+.++..+..+. ....+.+|++++++ ....+..+.+ .+..+
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 341 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHS---PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE
T ss_pred CcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCcccceeccCCCCCCeEEEE
Confidence 987 42 233343333333 2458899998887765441 12267788888764 2344544433 35556
Q ss_pred EEeeCCCeEEEEe-C---CeEEEEECCCCeEEEEecccCCceEEE--EecCCCEEEE---E--eCCcEEEEecC
Q 046773 390 MGCMNQGYALMCV-E---GVIRVWEVEGGEYMYSFRERIGEEVIA--FVGDDRHVAA---S--CGTNIHLWDFG 452 (453)
Q Consensus 390 ~~~~~~~~lls~s-~---~tIrlWD~~tG~~l~tL~gh~~~~V~a--~s~d~~~las---g--~D~~IklWDl~ 452 (453)
.++ ++++++.+. . ..|++||+.+|++++.|..+.+. |.. ++||++.|+. + ..++|.+||+.
T Consensus 342 ~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~-v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 342 ACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS-VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp EEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSE-EEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred EEE-cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCce-EEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 555 455555443 3 36788899889998999888666 764 4578876652 2 46789999974
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-11 Score=131.20 Aligned_cols=237 Identities=8% Similarity=-0.061 Sum_probs=136.7
Q ss_pred cCCE-EEEEeC-CCcEEEEECC--CCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCC----------CCEEE
Q 046773 153 SDLY-LACGFA-DGAVRLFDLT--TRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLD----------GDIHV 216 (453)
Q Consensus 153 s~~~-LaSGS~-D~TIrlWD~~--tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D----------~tIkv 216 (453)
++++ ||..+. +..|.+||+. ++...+.|...... ++...+.+++| ||+.|++++.| .+|++
T Consensus 89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAV---GGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCS---TTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccC---CCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 3567 776654 4556666665 30445667652100 00113455555 57899999887 57899
Q ss_pred EEeecC-----C-cceEE-eeecceecCceEEEEeCCCceeeEEEEeeCC--------CeEEEeeCC-CC---cEEeccc
Q 046773 217 AVIDDV-----A-NETRT-AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG--------RAFHIWDRQ-AE---EVFVGGD 277 (453)
Q Consensus 217 Wd~~~~-----g-~~~~~-~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D--------~tIrvWD~~-tg---~~~~g~~ 277 (453)
||+++. + ...+. .+...+ ..++|||||++ ||..+.| .+|.+||++ +| +..
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~SpDG~~---la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~---- 234 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDDAHRFV----TGPRLSPDGRQ---AVWLAWDHPRMPWEGTELKTARVTEDGRFADTR---- 234 (662)
T ss_dssp EETTSTTTTCGGGSEESSCSCSSEE----CCCEECTTSSE---EEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE----
T ss_pred EECCCCccccCCceeEEEecCCCcc----cCceECCCCCE---EEEEECCCCCCCCCCcEEEEEEECCCCcccccE----
Confidence 998761 2 22222 222211 13789999997 5555544 479999999 57 311
Q ss_pred ccCCcceeeeeeeeeeccceeEEEEcCCceEEE-Ec-CC--cEEEEECCCCceEEEEeeccCC--------eEEEEEEec
Q 046773 278 LTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA-CT-SS--RVITFDLRNQGMVLGERGYGRG--------LYVTSVDVN 345 (453)
Q Consensus 278 l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va-s~-d~--tIrlWDl~t~~~~~~~~g~~~~--------~~v~~~~~~ 345 (453)
....+|...+..+.|+|++.++. ++ ++ .|.+||+.+++......++... ....+++++
T Consensus 235 ----------~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 235 ----------TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLAN 304 (662)
T ss_dssp ----------EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTT
T ss_pred ----------EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCC
Confidence 11223456788899998875433 33 45 5777787776543222222111 112345567
Q ss_pred CCEEEEEeCCCccccCcceEEEEEc--CCCeeEEEEEecCCCeeEEEEeeCCCeEE-EEeC----CeEEEEECCCCeEEE
Q 046773 346 AEAYIVVENRELENQNRRLAIVRRV--DTFEEVCRFSLRADRNVNVMGCMNQGYAL-MCVE----GVIRVWEVEGGEYMY 418 (453)
Q Consensus 346 g~~l~s~s~dg~~~~~~~~i~Iw~~--~tg~~v~~l~~~~~~v~~~~~~~~~~~ll-s~s~----~tIrlWD~~tG~~l~ 418 (453)
+..+++++. + +++||.+ ++++ +..++.+...+..+. +++++.++ ++++ ..|.+||+.++++..
T Consensus 305 ~~~~~~~~~-~-------~~~l~~~d~~~~~-~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 305 GLIAVVHGK-G-------AAVLGILDPESGE-LVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp SCEEEEEBS-S-------SCEEEEEETTTTE-EEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred CEEEEEEEc-C-------ccEEEEEECCCCc-EEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 777888777 8 8899954 4454 666665554455442 55666554 3332 367777888887654
Q ss_pred Eeccc
Q 046773 419 SFRER 423 (453)
Q Consensus 419 tL~gh 423 (453)
....|
T Consensus 375 l~~~~ 379 (662)
T 3azo_A 375 IGARH 379 (662)
T ss_dssp EESCC
T ss_pred eecCC
Confidence 43444
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-11 Score=119.14 Aligned_cols=268 Identities=11% Similarity=-0.015 Sum_probs=143.9
Q ss_pred EEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCC-C--CEEEEEeecCCcceEEeeecceecCceEEEEe
Q 046773 168 LFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLD-G--DIHVAVIDDVANETRTAHFGSVMDDGVLIDFT 244 (453)
Q Consensus 168 lWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D-~--tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs 244 (453)
..|..+|+.++.|..+.......+...+ +++++|+.|++.+.+ + .|.+||+.+ + ...+...+.. .....+.|+
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~-~~SpdG~~l~~~~~~~g~~~l~~~d~~~-~-~~~~l~~~~~-~~~~~~~~s 89 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQK-CFTQDGKKLLFAGDFDGNRNYYLLNLET-Q-QAVQLTEGKG-DNTFGGFIS 89 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSC-CBCTTSCEEEEEECTTSSCEEEEEETTT-T-EEEECCCSSC-BCTTTCEEC
T ss_pred eecCCCCcceEEEecCCCCccceeeecC-cCCCCCCEEEEEEecCCCceEEEEECCC-C-cEEEeecCCC-CccccceEC
Confidence 4588999999888754221000000011 144568888887653 3 466667665 4 2222111110 001125799
Q ss_pred CCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeee---eeeccce-------eEEEEcCCceE--EE--
Q 046773 245 GCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRML---TEFTEFV-------GRVRVTSHESA--VA-- 310 (453)
Q Consensus 245 ~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l---~~h~~~v-------~~v~~s~~~~~--va-- 310 (453)
|||++ |+..+.+..|.+||+.+++...-... +.. |..- ....... ..+.++|++.. ++
T Consensus 90 pdg~~---l~~~~~~~~l~~~d~~~~~~~~~~~~--~~~---~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 90 TDERA---FFYVKNELNLMKVDLETLEEQVIYTV--DEE---WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp TTSSE---EEEEETTTEEEEEETTTCCEEEEEEC--CTT---EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred CCCCE---EEEEEcCCcEEEEECCCCCcEEEEec--ccc---cCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence 99997 66778888999999999872110000 000 1000 0000000 00123444422 11
Q ss_pred ---EcCCcEEEEECCCCceEEEEeeccCCeEEEEEEe-cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC-C-
Q 046773 311 ---CTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDV-NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-D- 384 (453)
Q Consensus 311 ---s~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-~- 384 (453)
..+..|.+||+.+++..... .+.....-..++| +++.++..+.+. .+.....+.+++.++++. ..+..+. .
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~-~~~~~~~l~~~d~~~~~~-~~l~~~~~~~ 238 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGP-HDLVDARMWLVNEDGSNV-RKIKEHAEGE 238 (396)
T ss_dssp HHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSC-SSSCSCCCEEEETTSCCC-EESSCCCTTE
T ss_pred ccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCC-CCCCCceEEEEECCCCce-eEeeccCCCc
Confidence 23357999999987653332 2333344456777 677677766533 111112566777765542 2222221 1
Q ss_pred CeeEEEEeeCCCeEEEEeC------CeEEEEECCCCeEEEEecccCCceEEEEec-CCCEEEEE-e--------------
Q 046773 385 RNVNVMGCMNQGYALMCVE------GVIRVWEVEGGEYMYSFRERIGEEVIAFVG-DDRHVAAS-C-------------- 442 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~------~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~-d~~~lasg-~-------------- 442 (453)
.+..+.++|++++++..+. ++|++||+++|+...... ..+. .-+++| |+++|+.+ .
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~-~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPPC-SHLMSNFDGSLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCSE-EEEEECSSSSEEEEEECCC----------CC
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCCC-CCCccCCCCceEEEecCCcceeecccccccc
Confidence 3566788999988776532 349999999986543221 1122 246788 99988864 3
Q ss_pred --CCcEEEEecC
Q 046773 443 --GTNIHLWDFG 452 (453)
Q Consensus 443 --D~~IklWDl~ 452 (453)
+..|.+||+.
T Consensus 317 ~~~~~i~~~d~~ 328 (396)
T 3c5m_A 317 ENDPFLYVLNTK 328 (396)
T ss_dssp CCCCEEEEEETT
T ss_pred CCCCcEEEEecc
Confidence 3679999864
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-10 Score=111.62 Aligned_cols=267 Identities=12% Similarity=0.031 Sum_probs=161.6
Q ss_pred eCCCcEEEEECCCCeEEEEecC-CCCCccccccceEEEEEEcCCeEEE-EeCCCCEEEEEeecCC--cceEEeeecceec
Q 046773 161 FADGAVRLFDLTTRLHVRTFRP-QHSDRLGQFSRAVSGIIITDSQLIF-ATLDGDIHVAVIDDVA--NETRTAHFGSVMD 236 (453)
Q Consensus 161 S~D~TIrlWD~~tg~~~~tl~g-h~~~~~~~~s~~V~~i~f~g~~Las-gS~D~tIkvWd~~~~g--~~~~~~~~~~v~~ 236 (453)
+.|++|.++|.+|++..+++.. ......| ....++++++.+|.. ...+++|.++|..+ + +.++.. ..
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg---~~~~~i~~~~~~lyv~~~~~~~v~viD~~t-~~~~~~i~~-----~~ 84 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLG---DVAQSMVIRDGIGWIVVNNSHVIFAIDINT-FKEVGRITG-----FT 84 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCB---SCEEEEEEETTEEEEEEGGGTEEEEEETTT-CCEEEEEEC-----CS
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccC---ccceEEEEECCEEEEEEcCCCEEEEEECcc-cEEEEEcCC-----CC
Confidence 4589999999999998766521 0001111 134567788776544 45578999999987 4 122211 12
Q ss_pred CceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc--CC
Q 046773 237 DGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT--SS 314 (453)
Q Consensus 237 ~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~--d~ 314 (453)
....|+|+++|+. .++...+++|.+||.++++...--.+.. ..+.......+.++.+.++++.. ++
T Consensus 85 ~p~~i~~~~~g~l---yv~~~~~~~v~~iD~~t~~~~~~i~~g~---------~~~~~~~p~~i~~~~~~lyv~~~~~~~ 152 (328)
T 3dsm_A 85 SPRYIHFLSDEKA---YVTQIWDYRIFIINPKTYEITGYIECPD---------MDMESGSTEQMVQYGKYVYVNCWSYQN 152 (328)
T ss_dssp SEEEEEEEETTEE---EEEEBSCSEEEEEETTTTEEEEEEECTT---------CCTTTCBCCCEEEETTEEEEEECTTCC
T ss_pred CCcEEEEeCCCeE---EEEECCCCeEEEEECCCCeEEEEEEcCC---------ccccCCCcceEEEECCEEEEEcCCCCC
Confidence 2235899999863 3344479999999999988321000000 00001123456666666677763 67
Q ss_pred cEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCcc---ccCcceEEEEEcCCCeeEEEEEecC-CCeeEE
Q 046773 315 RVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELE---NQNRRLAIVRRVDTFEEVCRFSLRA-DRNVNV 389 (453)
Q Consensus 315 tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~---~~~~~~i~Iw~~~tg~~v~~l~~~~-~~v~~~ 389 (453)
+|.++|+++++.+.+. .+.. ..-..++++|+.+++...+... .+....+.++|..+++.+..+.... .....+
T Consensus 153 ~v~viD~~t~~~~~~i~~g~~--p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 153 RILKIDTETDKVVDELTIGIQ--PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp EEEEEETTTTEEEEEEECSSC--BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred EEEEEECCCCeEEEEEEcCCC--ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 9999999998765554 2211 1124567777766554443000 0001278999999998776765432 346788
Q ss_pred EEeeCCCeEEEEeCCeEEEEECCCCeEEEE--ecccCCceEE--EEec-CCCEEEEE-----eCCcEEEEecC
Q 046773 390 MGCMNQGYALMCVEGVIRVWEVEGGEYMYS--FRERIGEEVI--AFVG-DDRHVAAS-----CGTNIHLWDFG 452 (453)
Q Consensus 390 ~~~~~~~~lls~s~~tIrlWD~~tG~~l~t--L~gh~~~~V~--a~s~-d~~~lasg-----~D~~IklWDl~ 452 (453)
+++++++++..+.. +|.+||+++++.... +..+... .. +++| +++..++. .+++|.+||..
T Consensus 231 a~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~-p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 231 QLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTK-YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSC-EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCc-eEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 89998888776554 899999999886422 2211223 44 6778 45555553 36789999853
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-10 Score=124.17 Aligned_cols=270 Identities=9% Similarity=-0.051 Sum_probs=152.5
Q ss_pred ecCCEEEEEeCCC---cEEEEEC--CCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEE-----EeCCCCEEEEEe
Q 046773 152 LSDLYLACGFADG---AVRLFDL--TTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIF-----ATLDGDIHVAVI 219 (453)
Q Consensus 152 fs~~~LaSGS~D~---TIrlWD~--~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~Las-----gS~D~tIkvWd~ 219 (453)
.++++++-.+.++ .-.||-+ .+++....+.+.... ..+...+.+++| ||++||. |+.+.+|+|||+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a--~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWS--KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSS--SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhc--cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 5666666665554 3455554 455543333211000 000113555555 5778884 444578999999
Q ss_pred ecCCcceE-EeeecceecCceEEEEeCCCceeeEEEEeeCCCe-------------EEEeeCCCCc---EEecccccCCc
Q 046773 220 DDVANETR-TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRA-------------FHIWDRQAEE---VFVGGDLTDHN 282 (453)
Q Consensus 220 ~~~g~~~~-~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~t-------------IrvWD~~tg~---~~~g~~l~~~~ 282 (453)
++ | ..+ ..+...+.. ..++|+|||+. |+.++.|.+ |++|++.+++ .+.
T Consensus 155 ~t-g-~~~~~~~~~~~~~--~~~~wspDg~~---l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv-------- 219 (695)
T 2bkl_A 155 DS-G-EWSKVDVIEGGKY--ATPKWTPDSKG---FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV-------- 219 (695)
T ss_dssp TT-C-CBCSSCCBSCCTT--CCCEECTTSSE---EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE--------
T ss_pred CC-C-CCcCCcccCcccc--cceEEecCCCE---EEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE--------
Confidence 88 5 222 112221110 24799999996 677788877 9999999876 121
Q ss_pred ceeeeeeeeeeccceeEEEEcCCc--eEEEEcCC----cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCC
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSS----RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRE 356 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~----tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg 356 (453)
.....+...+..+.++|++ +++++.++ .|.+||..+++. ..+..+.... ...+.++++ ++..+...
T Consensus 220 -----~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~-~~~~~~~g~-l~~~s~~~ 291 (695)
T 2bkl_A 220 -----HERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAK-YEVHAWKDR-FYVLTDEG 291 (695)
T ss_dssp -----ECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCC-EEEEEETTE-EEEEECTT
T ss_pred -----EecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCce-EEEEecCCc-EEEEECCC
Confidence 1112344567788999887 34444443 577777766542 3332222222 223346777 55544321
Q ss_pred ccccCcceEEEEEcCCCee--EEEEEec-CCC-eeEEEEeeCCCeEEE-EeC-CeEEEEECC-CCeEEEEeccc-CCceE
Q 046773 357 LENQNRRLAIVRRVDTFEE--VCRFSLR-ADR-NVNVMGCMNQGYALM-CVE-GVIRVWEVE-GGEYMYSFRER-IGEEV 428 (453)
Q Consensus 357 ~~~~~~~~i~Iw~~~tg~~--v~~l~~~-~~~-v~~~~~~~~~~~lls-~s~-~tIrlWD~~-tG~~l~tL~gh-~~~~V 428 (453)
..+..+.+|++++++. ...+..+ ++. +..+.++ +++++. ... ++.+||.+. +|++++.+..+ .+. |
T Consensus 292 ---~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~-v 365 (695)
T 2bkl_A 292 ---APRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGA-A 365 (695)
T ss_dssp ---CTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSE-E
T ss_pred ---CCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeE-E
Confidence 1123788888877753 2333333 232 4555554 445554 443 777777554 57778888766 444 6
Q ss_pred E--EEecCCCEEE----EE-eCCcEEEEecC
Q 046773 429 I--AFVGDDRHVA----AS-CGTNIHLWDFG 452 (453)
Q Consensus 429 ~--a~s~d~~~la----sg-~D~~IklWDl~ 452 (453)
. +++||++.|+ +. .+++|++||+.
T Consensus 366 ~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 366 SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp CCCBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred EEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 5 4568888776 22 56889999974
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-10 Score=110.56 Aligned_cols=254 Identities=7% Similarity=-0.022 Sum_probs=153.5
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
+.+++|++ ..+++.+.++++++| +++...++.++.. .+.+++++ ++.+++++.++.|.+||.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~- 75 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGL--------QLEGLNFDRQGQLFLLDVFEGNIFKINPET- 75 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCC--------CEEEEEECTTSCEEEEETTTCEEEEECTTT-
T ss_pred cceeeecCCccceeEEeecccCccc---ccceeEEEeccCc--------cccCcEECCCCCEEEEECCCCEEEEEeCCC-
Confidence 56788886 356666889999999 5677777765433 34667775 55666788899999999876
Q ss_pred C-cceEE-eeecceecCceEEEEeCCCceeeEEEEeeCC----CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccc
Q 046773 223 A-NETRT-AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG----RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 223 g-~~~~~-~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D----~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
+ ...+. .+...+ ..++|+|+|+. +++.+.+ +.|.+||.++++...- +.. ......
T Consensus 76 ~~~~~~~~~~~~~~----~~i~~~~dg~l---~v~~~~~~~~~~~i~~~d~~~~~~~~~--~~~----------~~~~~~ 136 (333)
T 2dg1_A 76 KEIKRPFVSHKANP----AAIKIHKDGRL---FVCYLGDFKSTGGIFAATENGDNLQDI--IED----------LSTAYC 136 (333)
T ss_dssp CCEEEEEECSSSSE----EEEEECTTSCE---EEEECTTSSSCCEEEEECTTSCSCEEE--ECS----------SSSCCC
T ss_pred CcEEEEeeCCCCCc----ceEEECCCCcE---EEEeCCCCCCCceEEEEeCCCCEEEEE--Ecc----------CccCCc
Confidence 4 22221 111111 24899999985 3454555 6899999988772100 000 012246
Q ss_pred eeEEEEcCCceEEE-EcC-------CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEE-eCCCccccCcceEEE
Q 046773 297 VGRVRVTSHESAVA-CTS-------SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVV-ENRELENQNRRLAIV 367 (453)
Q Consensus 297 v~~v~~s~~~~~va-s~d-------~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~-s~dg~~~~~~~~i~I 367 (453)
++.+.+++++.+.. +.. ..|..+|.++++.. ..........-.+++++++.+..+ +.++ .+.+
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~-------~i~~ 208 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTAN-------RLHR 208 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGT-------EEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCC-------eEEE
Confidence 78899998875444 332 24555566554432 221111122334567777755444 4456 8899
Q ss_pred EEcCC-CeeEEEE------EecC-CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCC------ceEE--E
Q 046773 368 RRVDT-FEEVCRF------SLRA-DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIG------EEVI--A 430 (453)
Q Consensus 368 w~~~t-g~~v~~l------~~~~-~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~------~~V~--a 430 (453)
|+.++ ++.+..+ .... .....+++++++..+++... +.|.+||. +|+.+.++..+.. . +. +
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~-~~~~~ 286 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR-STHPQ 286 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB-CCEEE
T ss_pred EEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccC-cceEE
Confidence 99864 4333221 1111 23566777788776666655 89999998 5777777754422 3 33 6
Q ss_pred EecCCCEEEEE
Q 046773 431 FVGDDRHVAAS 441 (453)
Q Consensus 431 ~s~d~~~lasg 441 (453)
|+||++.|..+
T Consensus 287 ~~~dg~~L~v~ 297 (333)
T 2dg1_A 287 FIPGTNQLIIC 297 (333)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCCEEEEE
Confidence 77898776433
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.3e-10 Score=121.30 Aligned_cols=237 Identities=12% Similarity=0.063 Sum_probs=142.9
Q ss_pred EEEEEEecC--CEEEEEeCCC-----cEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCC---
Q 046773 146 TCRCLTLSD--LYLACGFADG-----AVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGD--- 213 (453)
Q Consensus 146 ~v~~lafs~--~~LaSGS~D~-----TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~t--- 213 (453)
.+..++||+ ++||.++.++ +|++||+.+|+.+.....+. .+.++++ ||+.|++++.|.+
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~---------~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV---------KFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE---------CSCCEEECTTSSEEEEEECCCCSSC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc---------ccceEEEEeCCCEEEEEEECCcccc
Confidence 477888986 5888776554 99999999999876432211 1223555 6788999999877
Q ss_pred -------------EEEEEeecCCc-ceEEeeecceecC-ceEEEEeCCCceeeEEEEeeC-----CCeEEEeeCCC----
Q 046773 214 -------------IHVAVIDDVAN-ETRTAHFGSVMDD-GVLIDFTGCSRYWVGLYAGLA-----GRAFHIWDRQA---- 269 (453)
Q Consensus 214 -------------IkvWd~~~~g~-~~~~~~~~~v~~~-~~~v~Fs~dg~~~~~LaSgS~-----D~tIrvWD~~t---- 269 (453)
|++|++.+ +. .........-... ...+.|||||+++ +..+. +..|.+||+.+
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t-~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l---~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGT-DQSEDILCAEFPDEPKWMGGAELSDDGRYV---LLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTS-CGGGCEEEECCTTCTTCEEEEEECTTSCEE---EEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccCCCCEEEEEECCC-CcccceEEeccCCCCeEEEEEEEcCCCCEE---EEEEEccCCCccEEEEEECcccccc
Confidence 99999876 41 1111111100000 1247999999984 33332 67899999987
Q ss_pred --CcEEecccccCCcceeeeeeeeeeccceeEEEEc--CCceEEEEcC----CcEEEEECCCCc--eEEEEeeccCCeEE
Q 046773 270 --EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT--SHESAVACTS----SRVITFDLRNQG--MVLGERGYGRGLYV 339 (453)
Q Consensus 270 --g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s--~~~~~vas~d----~tIrlWDl~t~~--~~~~~~g~~~~~~v 339 (453)
++.- +..|..+...+.. .++ ++.+++.+.. ..|.+||+.+++ ....+..+.....+
T Consensus 273 ~~~~~~-------------~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 338 (710)
T 2xdw_A 273 ITGILK-------------WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL 338 (710)
T ss_dssp SCSSCC-------------CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred cCCccc-------------eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence 5200 1223333333333 244 3445555543 359999999864 12333333332345
Q ss_pred EEEEec-CC-EEEEEeCCCccccCcceEEE--EEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEE-EeC----CeEEEEE
Q 046773 340 TSVDVN-AE-AYIVVENRELENQNRRLAIV--RRVDTFEEVCRFSLRADRNVNVMGCMNQGYALM-CVE----GVIRVWE 410 (453)
Q Consensus 340 ~~~~~~-g~-~l~s~s~dg~~~~~~~~i~I--w~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls-~s~----~tIrlWD 410 (453)
..+.+. ++ .+++.+.++ ..+| |++.+|+.+..+.++...+..+.+++++..++. .++ ++|.+||
T Consensus 339 ~~~~~~~~~~lv~~~~~~g-------~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 339 EWVACVRSNFLVLCYLHDV-------KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEEEETTTEEEEEEEETT-------EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred EEEEEEcCCEEEEEEEECC-------EEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 555544 44 455566666 5444 566578877888776555666667777766653 333 7999999
Q ss_pred CCCCeE
Q 046773 411 VEGGEY 416 (453)
Q Consensus 411 ~~tG~~ 416 (453)
+.+|++
T Consensus 412 ~~tg~~ 417 (710)
T 2xdw_A 412 LTKEEL 417 (710)
T ss_dssp TTSSSC
T ss_pred CCCCcc
Confidence 999883
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.4e-10 Score=106.75 Aligned_cols=221 Identities=7% Similarity=-0.088 Sum_probs=136.0
Q ss_pred EEEEEEc--CC-eEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 195 VSGIIIT--DS-QLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 195 V~~i~f~--g~-~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
..+++++ ++ .+++++.++.|..||.++ +...+..+...+ ..++|+|+|+. +++.+.++.|.+||.++|+
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~----~~l~~~~dg~l---~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDG-QLSPEMHPSHHQ----NGHCLNKQGHL---IACSHGLRRLERQREPGGE 101 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTS-CEEEEESSCSSE----EEEEECTTCCE---EEEETTTTEEEEECSTTCC
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCC-CeEEEECCCCCc----ceeeECCCCcE---EEEecCCCeEEEEcCCCCc
Confidence 4556665 55 677888899999999877 333333322222 24899999985 4455567899999998887
Q ss_pred EEecccccCCcceeeeeeeee-eccceeEEEEcCCceEEEEcC-----------------CcEEEEECCCCceEEEEeec
Q 046773 272 VFVGGDLTDHNTVMGWRMLTE-FTEFVGRVRVTSHESAVACTS-----------------SRVITFDLRNQGMVLGERGY 333 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~-h~~~v~~v~~s~~~~~vas~d-----------------~tIrlWDl~t~~~~~~~~g~ 333 (453)
...- . ....+ ....++.+++++++.+..++. ..-+||.+...+.+.....+
T Consensus 102 ~~~~---~--------~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~ 170 (296)
T 3e5z_A 102 WESI---A--------DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRD 170 (296)
T ss_dssp EEEE---E--------CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECC
T ss_pred EEEE---e--------eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecC
Confidence 2110 0 00001 113456789998886555421 12245544432333333222
Q ss_pred cCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC-CCee---EEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEE
Q 046773 334 GRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD-TFEE---VCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVW 409 (453)
Q Consensus 334 ~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~---v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlW 409 (453)
.....-.+++++++.+++.+.++ .|.+|+.+ +++. ...+.........+++.+++..+++. .+.|.+|
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~-------~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~ 242 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDN-------ATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVL 242 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTT-------EEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEE
T ss_pred CCCCccEEECCCCCEEEEeCCCC-------eEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEE
Confidence 22233456788888886656666 88899886 5543 22332223335567888888766655 7889999
Q ss_pred ECCCCeEEEEecccCCceEE-EE-ecCCCEEEEE-eCC
Q 046773 410 EVEGGEYMYSFRERIGEEVI-AF-VGDDRHVAAS-CGT 444 (453)
Q Consensus 410 D~~tG~~l~tL~gh~~~~V~-a~-s~d~~~lasg-~D~ 444 (453)
|.. |+.+..+..+... .. +| .||++.|..+ .++
T Consensus 243 ~~~-g~~~~~~~~~~~~-~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQTT-SNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp CTT-SCEEEEEECSSCC-CEEEEESTTSCEEEEEETTE
T ss_pred CCC-CCEEEEEECCCCc-eeEEEECCCCCEEEEEcCCe
Confidence 987 8888888766552 22 67 4888888766 553
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.9e-10 Score=108.68 Aligned_cols=217 Identities=9% Similarity=0.010 Sum_probs=129.8
Q ss_pred eEEEEEEcCCeEEEEe---------CCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCC---C-
Q 046773 194 AVSGIIITDSQLIFAT---------LDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG---R- 260 (453)
Q Consensus 194 ~V~~i~f~g~~LasgS---------~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D---~- 260 (453)
.+...+++|+.|++.. .+.+|.+||+++ + ...+. . ....+.|||||++ ||..+.+ +
T Consensus 16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~-~-~~~~l--~----~~~~~~~SpDg~~---la~~~~~~~~~~ 84 (347)
T 2gop_A 16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKN-N-ARRFI--E----NATMPRISPDGKK---IAFMRANEEKKV 84 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTT-C-CEEEE--E----SCEEEEECTTSSE---EEEEEEETTTTE
T ss_pred EcccceECCcEEEEEEeecCcccCCccceEEEEeCCC-C-ceEEc--c----cCCCeEECCCCCE---EEEEEeccCCCc
Confidence 3455556888887753 255678888876 4 22222 1 1224799999997 4444432 2
Q ss_pred -eEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcC------------------------
Q 046773 261 -AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTS------------------------ 313 (453)
Q Consensus 261 -tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d------------------------ 313 (453)
.|.+||+++++... +..+.. +..++++|++. +.++.+
T Consensus 85 ~~l~~~~~~~g~~~~---------------l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (347)
T 2gop_A 85 SEIWVADLETLSSKK---------------ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFD 148 (347)
T ss_dssp EEEEEEETTTTEEEE---------------EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC--------
T ss_pred ceEEEEECCCCceEE---------------EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccccc
Confidence 47888998887321 222233 78899998874 333322
Q ss_pred ---CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcc-eEEEEEcCCCeeEEEEEecCCCeeEE
Q 046773 314 ---SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRR-LAIVRRVDTFEEVCRFSLRADRNVNV 389 (453)
Q Consensus 314 ---~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~-~i~Iw~~~tg~~v~~l~~~~~~v~~~ 389 (453)
..|.+||+.+++.+..+.. . .....+++++| .+++++.+.... ... ..+||.+++++ +..+..+ ..+..+
T Consensus 149 ~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~-~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~ 222 (347)
T 2gop_A 149 GEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIP-QYFKFWDIYIWEDGK-EEKMFEK-VSFYAV 222 (347)
T ss_dssp -CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSC-CSSCCEEEEEEETTE-EEEEEEE-ESEEEE
T ss_pred CccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccc-cccccccEEEeCCCc-eEEeccC-cceeeE
Confidence 4689999998765344332 2 33345667777 555554433100 001 34667666554 3444333 233333
Q ss_pred EEeeCCCeEEEEeC---------CeEEEEECCCCeEEEEecccCCceEE---EEecCCCEEEEE-eCCcEEEEec
Q 046773 390 MGCMNQGYALMCVE---------GVIRVWEVEGGEYMYSFRERIGEEVI---AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 390 ~~~~~~~~lls~s~---------~tIrlWD~~tG~~l~tL~gh~~~~V~---a~s~d~~~lasg-~D~~IklWDl 451 (453)
+|++++++..+. ..|.+|| +|+....+.+|... +. .++ |+ +++++ .|+.++|| +
T Consensus 223 --spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~-~~~~~~~s-dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 223 --DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRG-VGQAKIKD-GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp --EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSE-EEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred --CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcc-cCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence 889998876653 3688888 77765555566555 54 456 77 77888 89999999 6
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-09 Score=103.44 Aligned_cols=208 Identities=9% Similarity=0.051 Sum_probs=136.9
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecce
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSV 234 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v 234 (453)
++|++++.|++|.+||.+||+.+.++..+... .
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~------------------------------------~----------- 38 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGW------------------------------------E----------- 38 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTC------------------------------------C-----------
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccC------------------------------------C-----------
Confidence 58999999999999999999999888653210 0
Q ss_pred ecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--Ec
Q 046773 235 MDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CT 312 (453)
Q Consensus 235 ~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~ 312 (453)
...++++|+|+. |+ +.++.|..||. +|+.+ |+.-......+.++++.+++.++. +.
T Consensus 39 ---~~~~~~~pdG~i---lv--s~~~~V~~~d~-~G~~~-------------W~~~~~~~~~~~~~~~~~dG~~lv~~~~ 96 (276)
T 3no2_A 39 ---CNSVAATKAGEI---LF--SYSKGAKMITR-DGREL-------------WNIAAPAGCEMQTARILPDGNALVAWCG 96 (276)
T ss_dssp ---CCEEEECTTSCE---EE--ECBSEEEEECT-TSCEE-------------EEEECCTTCEEEEEEECTTSCEEEEEES
T ss_pred ---CcCeEECCCCCE---EE--eCCCCEEEECC-CCCEE-------------EEEcCCCCccccccEECCCCCEEEEecC
Confidence 012567788874 44 45788999998 77743 211111113466777877764333 33
Q ss_pred -CCcEEEEECCCCceEEEEee------ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC
Q 046773 313 -SSRVITFDLRNQGMVLGERG------YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR 385 (453)
Q Consensus 313 -d~tIrlWDl~t~~~~~~~~g------~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~ 385 (453)
..+|..+|. +|+.+.+... +.....-.++.++|+.+++.+.++ .+..+|.+ |+.+.++... ..
T Consensus 97 ~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~-------~v~~~d~~-G~~~w~~~~~-~~ 166 (276)
T 3no2_A 97 HPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS-------EVREIAPN-GQLLNSVKLS-GT 166 (276)
T ss_dssp TTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT-------EEEEECTT-SCEEEEEECS-SC
T ss_pred CCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC-------EEEEECCC-CCEEEEEECC-CC
Confidence 346666776 5665544321 100111135677889998888888 99999998 9988888654 33
Q ss_pred eeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccC--C-c--eEE--EEecCCCEEEEE
Q 046773 386 NVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERI--G-E--EVI--AFVGDDRHVAAS 441 (453)
Q Consensus 386 v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~--~-~--~V~--a~s~d~~~lasg 441 (453)
...+...+++..++++.+ +.|..+|.+||+.+.++..+. + . .+. ++.++|.++++.
T Consensus 167 ~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 167 PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 455666677777777666 789999999999999886431 1 1 133 445788887765
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.2e-08 Score=104.29 Aligned_cols=272 Identities=13% Similarity=0.061 Sum_probs=168.1
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEee--cCCcceEEee
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVID--DVANETRTAH 230 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~--~~g~~~~~~~ 230 (453)
.++++.+.|++|.++|..|++.+.++.... .+..+.| ||+.|+.++.|++|.++|+. + +....+..
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---------~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~ 237 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY---------AVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIK 237 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS---------CEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCC---------CccceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEe
Confidence 477888999999999999999998886322 2234555 57889889999999999985 4 31111111
Q ss_pred ecceecCceEEEEe----CCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecc-ceeEEEEcCC
Q 046773 231 FGSVMDDGVLIDFT----GCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTE-FVGRVRVTSH 305 (453)
Q Consensus 231 ~~~v~~~~~~v~Fs----~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~-~v~~v~~s~~ 305 (453)
.+. +...++|+ |||+++ +++...+++|.|+|..|.+.+.--.+.. ..+ .....|.. .+..+.++++
T Consensus 238 ~G~---~P~~ia~s~~~~pDGk~l--~v~n~~~~~v~ViD~~t~~~~~~i~~~~-~~~---~~~~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 238 IGS---EARSIETSKMEGWEDKYA--IAGAYWPPQYVIMDGETLEPKKIQSTRG-MTY---DEQEYHPEPRVAAILASHY 308 (567)
T ss_dssp CCS---EEEEEEECCSTTCTTTEE--EEEEEETTEEEEEETTTCCEEEEEECCE-ECT---TTCCEESCCCEEEEEECSS
T ss_pred cCC---CCceeEEccccCCCCCEE--EEEEccCCeEEEEECCCCcEEEEEeccc-ccc---ccccccCCCceEEEEEcCC
Confidence 121 12358999 699982 3445567999999999987432000000 000 00001222 4556666654
Q ss_pred c-e-EEEEc-CCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeC-CCccccCcceEEEEEcCCCeeEEEEE
Q 046773 306 E-S-AVACT-SSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVEN-RELENQNRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 306 ~-~-~vas~-d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~-dg~~~~~~~~i~Iw~~~tg~~v~~l~ 380 (453)
. . ++... ++.|.+.|..+.+.+... ...+....-..|+++++.+++++. +. .|.++|..+++.+..+.
T Consensus 309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn-------~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 309 RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN-------KLVVIDTKEGKLVAIED 381 (567)
T ss_dssp SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT-------EEEEEETTTTEEEEEEE
T ss_pred CCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCC-------eEEEEECCCCcEEEEEe
Confidence 3 3 33333 478999999875433221 112222223468888888777653 44 89999999998777665
Q ss_pred e-c--CCCeeEEE-EeeCCCeEEEEe--C-CeEEEEECCC-------CeEEEEecccC-CceEEEEecCCCEEEEE-e--
Q 046773 381 L-R--ADRNVNVM-GCMNQGYALMCV--E-GVIRVWEVEG-------GEYMYSFRERI-GEEVIAFVGDDRHVAAS-C-- 442 (453)
Q Consensus 381 ~-~--~~~v~~~~-~~~~~~~lls~s--~-~tIrlWD~~t-------G~~l~tL~gh~-~~~V~a~s~d~~~lasg-~-- 442 (453)
. . |+-.+... ++|+++.+.+.+ + ++|.++|+.+ -+.++++.+.. +..-..++||+++|-.. .
T Consensus 382 vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~ 461 (567)
T 1qks_A 382 TGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 461 (567)
T ss_dssp CSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC
T ss_pred ccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCC
Confidence 4 1 11112333 466656655443 3 8999999998 56788887542 22123568999987544 2
Q ss_pred -----CCcEEEEecC
Q 046773 443 -----GTNIHLWDFG 452 (453)
Q Consensus 443 -----D~~IklWDl~ 452 (453)
.++|-|+|+.
T Consensus 462 ~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 462 PEAEISGSVAVFDIK 476 (567)
T ss_dssp SSHHHHTCEEEEEGG
T ss_pred CCcccCceEEEEECC
Confidence 3589998864
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.9e-09 Score=115.03 Aligned_cols=272 Identities=11% Similarity=0.007 Sum_probs=152.9
Q ss_pred EecCCEEEEEeCCCc---EEEEECC-----CCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCC-----CCEE
Q 046773 151 TLSDLYLACGFADGA---VRLFDLT-----TRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLD-----GDIH 215 (453)
Q Consensus 151 afs~~~LaSGS~D~T---IrlWD~~-----tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D-----~tIk 215 (453)
..++++++-...++. -.||-+. +++...-|....-. .+ ....+.+++| ||++||+++.+ .+|+
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~-~~-~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWA-KD-GATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC------EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhc-cC-CCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 366777776665544 5677654 34433222211000 00 0013455555 57889887765 4699
Q ss_pred EEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCe--------------EEEeeCCCCc---EEecccc
Q 046773 216 VAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRA--------------FHIWDRQAEE---VFVGGDL 278 (453)
Q Consensus 216 vWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~t--------------IrvWD~~tg~---~~~g~~l 278 (453)
|||+++ | ..+..+...+.. ..++|+|| +. |+.++.|.+ |.+|++.+++ .+.-
T Consensus 193 v~dl~t-g-~~~~~~~~~~~~--~~~~wspD-~~---l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~--- 261 (741)
T 1yr2_A 193 FVGVAD-G-KPLADELKWVKF--SGLAWLGN-DA---LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF--- 261 (741)
T ss_dssp EEETTT-C-CEEEEEEEEEES--CCCEESTT-SE---EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEE---
T ss_pred EEECCC-C-CCCCccCCCcee--ccEEEECC-CE---EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEe---
Confidence 999988 5 223222211110 13789999 86 555566554 8999998875 1110
Q ss_pred cCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcC-----CcEEEEECCCC--ceEEEEeeccCCeEEEEEEecCCEE
Q 046773 279 TDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTS-----SRVITFDLRNQ--GMVLGERGYGRGLYVTSVDVNAEAY 349 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d-----~tIrlWDl~t~--~~~~~~~g~~~~~~v~~~~~~g~~l 349 (453)
....+...+..+.++|++. ++.+.+ ..|.+||+.++ ++...+..+.... ...++++|+.+
T Consensus 262 ----------~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~~~~~~dg~~l 330 (741)
T 1yr2_A 262 ----------ATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ-WDFVDGVGDQL 330 (741)
T ss_dssp ----------CCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC-EEEEEEETTEE
T ss_pred ----------ccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce-EEEEeccCCEE
Confidence 0112223567888999883 444433 37999999886 3133333222222 23356899998
Q ss_pred EEEeCCCccccCcceEEEEEcCCC-eeEEEEEecCCC-eeEEEEeeCCCeEEEE-eC-CeEEEEECC-CCeEEEEeccc-
Q 046773 350 IVVENRELENQNRRLAIVRRVDTF-EEVCRFSLRADR-NVNVMGCMNQGYALMC-VE-GVIRVWEVE-GGEYMYSFRER- 423 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~tg-~~v~~l~~~~~~-v~~~~~~~~~~~lls~-s~-~tIrlWD~~-tG~~l~tL~gh- 423 (453)
+..+.++. ....+.+|+++++ .....+..+... +..+.++ +++++.+ .. +..+||.+. +|++++.+..+
T Consensus 331 ~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~ 405 (741)
T 1yr2_A 331 WFVSGDGA---PLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG 405 (741)
T ss_dssp EEEECTTC---TTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS
T ss_pred EEEECCCC---CCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC
Confidence 88876541 1225778888875 233444333332 3334433 4555544 33 666666544 57777877654
Q ss_pred CCceEE--EEecCCCEEE----EE-eCCcEEEEecC
Q 046773 424 IGEEVI--AFVGDDRHVA----AS-CGTNIHLWDFG 452 (453)
Q Consensus 424 ~~~~V~--a~s~d~~~la----sg-~D~~IklWDl~ 452 (453)
.+. |. +++||++.|+ +. .+++|.+||+.
T Consensus 406 ~~~-v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 406 IGS-ASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp SCE-EEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred CeE-EEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 444 66 4568887655 22 56899999974
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-09 Score=104.45 Aligned_cols=188 Identities=7% Similarity=0.037 Sum_probs=118.8
Q ss_pred EEEEeCCCceeeEEEEeeCC------------------------CeEEEeeCCCCcEEecccccCCcceeeeeeeeeecc
Q 046773 240 LIDFTGCSRYWVGLYAGLAG------------------------RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D------------------------~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
.|+|+|+|+. +++.+.+ ++|.+||.++|+.+.. .-.++..
T Consensus 28 ~va~d~~G~l---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-------------~~~~~~~ 91 (329)
T 3fvz_A 28 GVALDSKNNL---VIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-------------SGKNLFY 91 (329)
T ss_dssp EEEECTTCCE---EEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-------------ECTTTCS
T ss_pred EEEECCCCCE---EEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-------------cCCCccC
Confidence 4899999985 4566666 4799999998884320 0012234
Q ss_pred ceeEEEEcCCceE-EEEc-CCcEEEEECCCCc-eEEEEe---------eccCCeEEEEEEe-cCCEEEEEe-CCCccccC
Q 046773 296 FVGRVRVTSHESA-VACT-SSRVITFDLRNQG-MVLGER---------GYGRGLYVTSVDV-NAEAYIVVE-NRELENQN 361 (453)
Q Consensus 296 ~v~~v~~s~~~~~-vas~-d~tIrlWDl~t~~-~~~~~~---------g~~~~~~v~~~~~-~g~~l~s~s-~dg~~~~~ 361 (453)
....|++++++.+ ++.. +++|++||+.... .+.+.. ++-....-.++++ +++.+++.+ .++
T Consensus 92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~----- 166 (329)
T 3fvz_A 92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS----- 166 (329)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC-----
T ss_pred CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC-----
Confidence 5678999987744 4433 4789999987542 333331 1111222345666 566677665 466
Q ss_pred cceEEEEEcCCCeeEEEEEecCC----------CeeEEEEeeCCCeEEEEe-C-CeEEEEECCCCeEEEEecc--cCCce
Q 046773 362 RRLAIVRRVDTFEEVCRFSLRAD----------RNVNVMGCMNQGYALMCV-E-GVIRVWEVEGGEYMYSFRE--RIGEE 427 (453)
Q Consensus 362 ~~~i~Iw~~~tg~~v~~l~~~~~----------~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG~~l~tL~g--h~~~~ 427 (453)
.|++|+ .+|+.+..+..... ....++++++++.+..+. . +.|++||..+|+++.++.. +...
T Consensus 167 --~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~- 242 (329)
T 3fvz_A 167 --RIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRN- 242 (329)
T ss_dssp --EEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC-
T ss_pred --eEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCC-
Confidence 888888 56766666643222 256788888856665554 4 8999999999999998843 3344
Q ss_pred EE--EEec------CCCEEEEE-eCCcEEEEecC
Q 046773 428 VI--AFVG------DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 428 V~--a~s~------d~~~lasg-~D~~IklWDl~ 452 (453)
+. +++| +++..++. .+.+|++||+.
T Consensus 243 ~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 243 VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS 276 (329)
T ss_dssp EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETT
T ss_pred cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcC
Confidence 55 5567 33333333 45689999853
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-08 Score=96.19 Aligned_cols=228 Identities=8% Similarity=-0.064 Sum_probs=138.1
Q ss_pred EEEEEecC--C-EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLSD--L-YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs~--~-~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~ 221 (453)
..+++|++ + +++++..+++|.+||..++ .+.+..+.. .+.+++++ |+.+++.+.++.|.+||..+
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~--------~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSH--------HQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCS--------SEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCC--------CcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 57888875 5 7899999999999999998 566654322 46678875 56666666678899999866
Q ss_pred CC-cceEEee-ecceecCceEEEEeCCCceeeEEEE----eeC-------------CCeEEEeeCCCCcEEecccccCCc
Q 046773 222 VA-NETRTAH-FGSVMDDGVLIDFTGCSRYWVGLYA----GLA-------------GRAFHIWDRQAEEVFVGGDLTDHN 282 (453)
Q Consensus 222 ~g-~~~~~~~-~~~v~~~~~~v~Fs~dg~~~~~LaS----gS~-------------D~tIrvWD~~tg~~~~g~~l~~~~ 282 (453)
| ...+... .+........++|+|+|+. +++ |+. .+.|..+|.. ++..
T Consensus 100 -g~~~~~~~~~~~~~~~~~~~i~~d~~G~l---~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~--------- 165 (296)
T 3e5z_A 100 -GEWESIADSFEGKKLNSPNDVCLAPDGSL---WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS--------- 165 (296)
T ss_dssp -CCEEEEECEETTEECCCCCCEEECTTSCE---EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE---------
T ss_pred -CcEEEEeeccCCCCCCCCCCEEECCCCCE---EEECCccccccccccccccccCCCcEEEEECCC-CCEE---------
Confidence 4 2222111 1111111123899999986 445 331 2234444443 4421
Q ss_pred ceeeeeeeeeeccceeEEEEcCCceE-EEEc-CCcEEEEECC-CCce-E--EEEeeccCCeEEEEEEecCCEEEEEeCCC
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHESA-VACT-SSRVITFDLR-NQGM-V--LGERGYGRGLYVTSVDVNAEAYIVVENRE 356 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~~~-vas~-d~tIrlWDl~-t~~~-~--~~~~g~~~~~~v~~~~~~g~~l~s~s~dg 356 (453)
.+..+....+.++|+|++.. ++.. +++|.+||+. ++.. . .....+.....-.+++++|+.+++. ++
T Consensus 166 ------~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~ 237 (296)
T 3e5z_A 166 ------APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD 237 (296)
T ss_dssp ------EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT
T ss_pred ------EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC
Confidence 12233355678999988743 3333 4789999997 4443 1 1111111111124677778766554 66
Q ss_pred ccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEe-eCCCeEEEEeCCeEEEEECCCCe
Q 046773 357 LENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGC-MNQGYALMCVEGVIRVWEVEGGE 415 (453)
Q Consensus 357 ~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~-~~~~~lls~s~~tIrlWD~~tG~ 415 (453)
.|.+|+.+ ++.+..+..... +..+++. ++++.+.+++.+.+--.++++.+
T Consensus 238 -------~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~ 288 (296)
T 3e5z_A 238 -------GVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRG 288 (296)
T ss_dssp -------EEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCB
T ss_pred -------eEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEccccc
Confidence 88899886 777777776555 7778884 67777777766544445666644
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-08 Score=98.80 Aligned_cols=235 Identities=10% Similarity=0.010 Sum_probs=143.0
Q ss_pred EEEEEecCC-EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE-cCCeEEEEe-CCCCEEEEEeecCC
Q 046773 147 CRCLTLSDL-YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII-TDSQLIFAT-LDGDIHVAVIDDVA 223 (453)
Q Consensus 147 v~~lafs~~-~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f-~g~~LasgS-~D~tIkvWd~~~~g 223 (453)
...++++++ ..++...+++|.+||+.|++.++++.... ....|++ .+.+|..+. .+++|.++|..+ +
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~---------~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~ 115 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFT---------SPRYIHFLSDEKAYVTQIWDYRIFIINPKT-Y 115 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCS---------SEEEEEEEETTEEEEEEBSCSEEEEEETTT-T
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCC---------CCcEEEEeCCCeEEEEECCCCeEEEEECCC-C
Confidence 567778775 55666678999999999999999985321 3456776 333554444 789999999877 4
Q ss_pred cceE-Eeeecce---ecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 224 NETR-TAHFGSV---MDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 224 ~~~~-~~~~~~v---~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
... +...+.- ......+++ .+++. +++.. .+++|.++|+++++... ++.. .....
T Consensus 116 -~~~~~i~~g~~~~~~~~p~~i~~-~~~~l---yv~~~~~~~~v~viD~~t~~~~~--------------~i~~-g~~p~ 175 (328)
T 3dsm_A 116 -EITGYIECPDMDMESGSTEQMVQ-YGKYV---YVNCWSYQNRILKIDTETDKVVD--------------ELTI-GIQPT 175 (328)
T ss_dssp -EEEEEEECTTCCTTTCBCCCEEE-ETTEE---EEEECTTCCEEEEEETTTTEEEE--------------EEEC-SSCBC
T ss_pred -eEEEEEEcCCccccCCCcceEEE-ECCEE---EEEcCCCCCEEEEEECCCCeEEE--------------EEEc-CCCcc
Confidence 111 1111110 001112566 34442 23333 48999999999988431 1111 12235
Q ss_pred EEEEcCCceE-EEEc-C----------CcEEEEECCCCceEEEEe-eccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 299 RVRVTSHESA-VACT-S----------SRVITFDLRNQGMVLGER-GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 299 ~v~~s~~~~~-vas~-d----------~tIrlWDl~t~~~~~~~~-g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
.+++++++.+ +++. + ++|.++|+++++...+.. ..+....-.+++++++.+..+. . ++
T Consensus 176 ~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~--~-------~v 246 (328)
T 3dsm_A 176 SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN--N-------DI 246 (328)
T ss_dssp CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES--S-------SE
T ss_pred ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc--c-------EE
Confidence 6788887654 3333 2 579999999987554432 1111223356677777776643 2 67
Q ss_pred EEEEcCCCeeEEE--EEecCCCeeEEEEeeCCCeEEEEe-----C-CeEEEEECCCCeEEEEec
Q 046773 366 IVRRVDTFEEVCR--FSLRADRNVNVMGCMNQGYALMCV-----E-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 366 ~Iw~~~tg~~v~~--l~~~~~~v~~~~~~~~~~~lls~s-----~-~tIrlWD~~tG~~l~tL~ 421 (453)
.++|.++++.... +.........++++|+++.+..+. . ++|.+||.. |+.+.+++
T Consensus 247 ~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 247 WRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred EEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 7888888764211 111123356778888666665554 4 899999998 99988875
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-07 Score=94.84 Aligned_cols=250 Identities=9% Similarity=-0.060 Sum_probs=147.7
Q ss_pred cEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEe----------CCCCEEEEEeecCCcceEEeeec--
Q 046773 165 AVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFAT----------LDGDIHVAVIDDVANETRTAHFG-- 232 (453)
Q Consensus 165 TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS----------~D~tIkvWd~~~~g~~~~~~~~~-- 232 (453)
+|.++|..|++.+.++..... + .+ .+++|++.|+.+. .+++|.++|..+ +...-+...+
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~----p---~i-~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t-~~~~~~i~~~~~ 118 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFL----P---NP-VAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT-FLPIADIELPDA 118 (373)
T ss_pred EEEEEECCCCeEEEEecCCCC----C---Ce-EECCCCCEEEEEeccccccccCCCCCeEEEEECCC-CcEEEEEECCCc
Confidence 899999999999888863211 1 11 1445677777664 367899999876 3111111111
Q ss_pred -ce--ecCceEEEEeCCCceeeEEEEeeC--CCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC---
Q 046773 233 -SV--MDDGVLIDFTGCSRYWVGLYAGLA--GRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS--- 304 (453)
Q Consensus 233 -~v--~~~~~~v~Fs~dg~~~~~LaSgS~--D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~--- 304 (453)
.. ......++|+|||++ |+.++. +.+|.++| ++++... ++.... .++.+.+
T Consensus 119 ~~~~~g~~p~~~~~spDG~~---l~v~n~~~~~~v~viD-~t~~~~~--------------~~i~~~---~~~~~~~~~~ 177 (373)
T 2mad_H 119 PRFDVGPYSWMNANTPNNAD---LLFFQFAAGPAVGLVV-QGGSSDD--------------QLLSSP---TCYHIHPGAP 177 (373)
T ss_pred cccccCCCccceEECCCCCE---EEEEecCCCCeEEEEE-CCCCEEe--------------EEcCCC---ceEEEEeCCC
Confidence 00 011124799999998 555553 58899999 9988431 000000 1233322
Q ss_pred CceEEEEcCCcEEEEECCCCceEEEEe------eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe--eE
Q 046773 305 HESAVACTSSRVITFDLRNQGMVLGER------GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE--EV 376 (453)
Q Consensus 305 ~~~~vas~d~tIrlWDl~t~~~~~~~~------g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~--~v 376 (453)
+..++.+.|+++.++|+ +++...... +...-.....+..++..++..+..+ .+.+.|+.+.+ .+
T Consensus 178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-------~v~vid~~~~~~~v~ 249 (373)
T 2mad_H 178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG-------KILQADISAAGATNK 249 (373)
T ss_pred ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc-------eEEEEeccCCcceEe
Confidence 22345567899999999 876542210 1000001123556666665556666 66666665432 11
Q ss_pred EEEE----------ecCCCeeEEEEeeCCCeEEEEe-----------CCeEEEEECCCCeEEEEecccCCceEEEEecCC
Q 046773 377 CRFS----------LRADRNVNVMGCMNQGYALMCV-----------EGVIRVWEVEGGEYMYSFRERIGEEVIAFVGDD 435 (453)
Q Consensus 377 ~~l~----------~~~~~v~~~~~~~~~~~lls~s-----------~~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~ 435 (453)
..+. +.|...+.+.++++++++..+. +++|.+.|++|++.+.++.......--+|+||+
T Consensus 250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg 329 (373)
T 2mad_H 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDG 329 (373)
T ss_pred eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCC
Confidence 2221 2344445577788888766543 158999999999999988643222122789999
Q ss_pred C-EEEEE--eCCcEEEEecC
Q 046773 436 R-HVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 436 ~-~lasg--~D~~IklWDl~ 452 (453)
+ ++.++ .+++|.++|+.
T Consensus 330 ~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 330 GPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred CeEEEEEcCCCCeEEEEECC
Confidence 9 67666 48999999974
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.4e-09 Score=100.39 Aligned_cols=175 Identities=10% Similarity=0.063 Sum_probs=120.5
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeec-cceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEe
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT-EFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGER 331 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~-~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~ 331 (453)
|++++.|+.|.+||.+||+.+ |. +..+. ..+.++.++|++.++.+.+..|..||. +++.+.+..
T Consensus 8 lv~~~~~~~v~~~d~~tG~~~-------------w~-~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~ 72 (276)
T 3no2_A 8 LVGGSGWNKIAIINKDTKEIV-------------WE-YPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIA 72 (276)
T ss_dssp EEECTTCSEEEEEETTTTEEE-------------EE-EECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEE
T ss_pred EEeeCCCCEEEEEECCCCeEE-------------EE-eCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEc
Confidence 789999999999999999953 22 11221 346788899988777777889999999 787766653
Q ss_pred ec-cCCeEEEEEEecCCEEEEEeC-CCccccCcceEEEEEcCCCeeEEEEEecCC------CeeEEEEeeCCCeEEEEeC
Q 046773 332 GY-GRGLYVTSVDVNAEAYIVVEN-RELENQNRRLAIVRRVDTFEEVCRFSLRAD------RNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 332 g~-~~~~~v~~~~~~g~~l~s~s~-dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~------~v~~~~~~~~~~~lls~s~ 403 (453)
.+ ........+.++|+.+++.+. .+ .+..++. +|+.+.++..... ..+.+...+++.++++...
T Consensus 73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~-------~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~ 144 (276)
T 3no2_A 73 APAGCEMQTARILPDGNALVAWCGHPS-------TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA 144 (276)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEESTTE-------EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT
T ss_pred CCCCccccccEECCCCCEEEEecCCCC-------EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC
Confidence 32 122333456678888887766 44 4433443 6777777764321 1334455678888877776
Q ss_pred -CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEec
Q 046773 404 -GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 404 -~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl 451 (453)
+.|..||.+ |+.+.++..+....-..+.+++++|+++ .++.|..+|.
T Consensus 145 ~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 145 TSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp TTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECT
T ss_pred CCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeC
Confidence 999999998 9999998754322112556899998887 6667877765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-06 Score=83.05 Aligned_cols=263 Identities=8% Similarity=-0.056 Sum_probs=152.8
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
+.++++++ ++.++...++.|.+||.. ++.. .+..... ...+.+++++ |...++...++.|..||.+.
T Consensus 17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g- 87 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTP------DAKVMCLTISSDGEVWFTENAANKIGRITKKG- 87 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSST------TCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred ccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcc------cCceeeEEECCCCCEEEeCCCCCeEEEECCCC-
Confidence 78899875 566666668999999998 6543 3321100 0246778876 45555555577888887652
Q ss_pred CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 223 ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 223 g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
....+...... .....++++|+|+. +++.+.++.|.+||. +++... ..+......+..+++
T Consensus 88 ~~~~~~~~~~~--~~~~~i~~~~~g~l---~v~~~~~~~i~~~d~-~g~~~~-------------~~~~~~~~~~~~i~~ 148 (299)
T 2z2n_A 88 IIKEYTLPNPD--SAPYGITEGPNGDI---WFTEMNGNRIGRITD-DGKIRE-------------YELPNKGSYPSFITL 148 (299)
T ss_dssp CEEEEECSSTT--CCEEEEEECTTSCE---EEEETTTTEEEEECT-TCCEEE-------------EECSSTTCCEEEEEE
T ss_pred cEEEEeCCCcC--CCceeeEECCCCCE---EEEecCCceEEEECC-CCCEEE-------------ecCCCCCCCCceEEE
Confidence 12222211000 11224889999985 345556789999998 665211 001112245678889
Q ss_pred cCCce-EEEEc-CCcEEEEECCCCceEEE-EeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 303 TSHES-AVACT-SSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 303 s~~~~-~vas~-d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
++++. .++.. ++.|..+|+ +++.... .........-.+++++++.+++...++ .+.+++. +++. ..+
T Consensus 149 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-------~i~~~~~-~g~~-~~~ 218 (299)
T 2z2n_A 149 GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN-------KIGRITT-SGEI-TEF 218 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT-------EEEEECT-TCCE-EEE
T ss_pred cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc-------eEEEECC-CCcE-EEE
Confidence 87764 44443 468999999 6654322 111122222344566666666554556 7888887 6653 333
Q ss_pred Eec--CCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEE-EecccCCceEE--EEecCCCEEEEEeCCcEEEEe
Q 046773 380 SLR--ADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMY-SFRERIGEEVI--AFVGDDRHVAASCGTNIHLWD 450 (453)
Q Consensus 380 ~~~--~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~-tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWD 450 (453)
... ...+..+++.+++...++... +.|.+||. +|+... .+.++... +. ++ +++++.++...+.|..+|
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~-~~~i~~-~~g~l~v~~~~~~l~~~~ 292 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAE-PHGICF-DGETIWFAMECDKIGKLT 292 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCC-EEEEEE-CSSCEEEEETTTEEEEEE
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCc-cceEEe-cCCCEEEEecCCcEEEEE
Confidence 222 244677888878775555444 89999999 565432 23444444 55 55 888877766334454444
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.5e-08 Score=107.27 Aligned_cols=240 Identities=10% Similarity=0.066 Sum_probs=139.3
Q ss_pred EEEEEEecC--CEEEEEeCC-----CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC-CeEEEEeCCCC----
Q 046773 146 TCRCLTLSD--LYLACGFAD-----GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD-SQLIFATLDGD---- 213 (453)
Q Consensus 146 ~v~~lafs~--~~LaSGS~D-----~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g-~~LasgS~D~t---- 213 (453)
.+..++||+ ++||.++.+ .+|++||+++|+.+.... +.. .+.++++++ +.|++++.|.+
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~--------~~~~~~wspD~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWV--------KFSGLAWLGNDALLYSRFAEPKEGQ 234 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEE--------ESCCCEESTTSEEEEEECCCC----
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCc--------eeccEEEECCCEEEEEEecCccccc
Confidence 367888886 588877655 579999999999865321 110 112345532 67888888775
Q ss_pred ----------EEEEEeecCCc-ceEEeeecceec-CceEEEEeCCCceeeEEEEeeC-----CCeEEEeeCCCC--cEEe
Q 046773 214 ----------IHVAVIDDVAN-ETRTAHFGSVMD-DGVLIDFTGCSRYWVGLYAGLA-----GRAFHIWDRQAE--EVFV 274 (453)
Q Consensus 214 ----------IkvWd~~~~g~-~~~~~~~~~v~~-~~~~v~Fs~dg~~~~~LaSgS~-----D~tIrvWD~~tg--~~~~ 274 (453)
|++|++.+ +. .........-.. ....+.|||||+++ +..+. ...|.+||++++ +.+
T Consensus 235 ~~~~~~~~~~v~~~~lgt-~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l---~~~~~~~~~~~~~l~~~d~~~~~~~~~- 309 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGT-PQSADQPVFATPELPKRGHGASVSSDGRWV---VITSSEGTDPVNTVHVARVTNGKIGPV- 309 (741)
T ss_dssp ----CCCCCEEEEEETTS-CGGGCEEEECCTTCTTCEEEEEECTTSCEE---EEEEECTTCSCCEEEEEEEETTEECCC-
T ss_pred ccccCCCCCEEEEEECCC-CchhCEEEeccCCCCeEEEEEEECCCCCEE---EEEEEccCCCcceEEEEECCCCCCccc-
Confidence 77888765 31 111111110000 01247899999983 33333 348999999877 201
Q ss_pred cccccCCcceeeeeeeeeeccceeE-EEEcCCceEEEEcC----CcEEEEECCCCc-eEEEEeeccCCeEEEEEEecCCE
Q 046773 275 GGDLTDHNTVMGWRMLTEFTEFVGR-VRVTSHESAVACTS----SRVITFDLRNQG-MVLGERGYGRGLYVTSVDVNAEA 348 (453)
Q Consensus 275 g~~l~~~~~v~~w~~l~~h~~~v~~-v~~s~~~~~vas~d----~tIrlWDl~t~~-~~~~~~g~~~~~~v~~~~~~g~~ 348 (453)
..|..+.+.+.. +.-+++.+++.+.+ ..|.+||+.++. ....+..+... .+..++++++.
T Consensus 310 -------------~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~~~~ 375 (741)
T 1yr2_A 310 -------------TALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIAGNR 375 (741)
T ss_dssp -------------EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEEBTE
T ss_pred -------------EEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEECCE
Confidence 112222222222 22234445555543 359999998852 33333222222 35566666665
Q ss_pred -EEEEeCCCccccCcceEEEEEcC-CCeeEEEEEec-CCCeeEEEEeeCCCeEEE-EeC----CeEEEEECCCCeEEEEe
Q 046773 349 -YIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLR-ADRNVNVMGCMNQGYALM-CVE----GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 349 -l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~-~~~v~~~~~~~~~~~lls-~s~----~tIrlWD~~tG~~l~tL 420 (453)
+++.+.++ ..+||.++ +++.+..+.+. ...+..+.+++++..++. .++ ++|.+||+.+|+ +..|
T Consensus 376 lv~~~~~dg-------~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~-~~~l 447 (741)
T 1yr2_A 376 LFASYIHDA-------KSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK-TTPW 447 (741)
T ss_dssp EEEEEEETT-------EEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE-EEEC
T ss_pred EEEEEEECC-------EEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc-EEEE
Confidence 45566677 77888766 46666666653 333556667777766552 222 899999999987 3444
Q ss_pred c
Q 046773 421 R 421 (453)
Q Consensus 421 ~ 421 (453)
.
T Consensus 448 ~ 448 (741)
T 1yr2_A 448 E 448 (741)
T ss_dssp S
T ss_pred e
Confidence 3
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-07 Score=92.54 Aligned_cols=272 Identities=10% Similarity=0.058 Sum_probs=159.7
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcce
Q 046773 147 CRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANET 226 (453)
Q Consensus 147 v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~ 226 (453)
......++..|..++.|+.|..+|.+||+.+..+..... . .......+..++.++.|+.|..+|..+ |...
T Consensus 96 ~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~-------~~~p~~~~~~v~v~~~~g~l~~~d~~t-G~~~ 166 (376)
T 3q7m_A 96 SGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE-A-------LSRPVVSDGLVLIHTSNGQLQALNEAD-GAVK 166 (376)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSC-C-------CSCCEEETTEEEEECTTSEEEEEETTT-CCEE
T ss_pred ccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc-e-------EcCCEEECCEEEEEcCCCeEEEEECCC-CcEE
Confidence 345667788888899999999999999999877654221 1 011234466888889999999888876 5111
Q ss_pred EEeeec-ceec--CceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc
Q 046773 227 RTAHFG-SVMD--DGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 227 ~~~~~~-~v~~--~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
.+.... .... ........ ++. |+.++.++.|..+|.++|+.+.-.....+... ..+....+......+.
T Consensus 167 W~~~~~~~~~~~~~~~~~~~~-~~~----v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~---~~~~~~~~~~~~p~~~ 238 (376)
T 3q7m_A 167 WTVNLDMPSLSLRGESAPTTA-FGA----AVVGGDNGRVSAVLMEQGQMIWQQRISQATGS---TEIDRLSDVDTTPVVV 238 (376)
T ss_dssp EEEECCC-----CCCCCCEEE-TTE----EEECCTTTEEEEEETTTCCEEEEEECCC--------------CCCCCCEEE
T ss_pred EEEeCCCCceeecCCCCcEEE-CCE----EEEEcCCCEEEEEECCCCcEEEEEecccCCCC---cccccccccCCCcEEE
Confidence 111110 0000 00011112 232 56788899999999999984311000000000 0000000000111233
Q ss_pred CCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC
Q 046773 304 SHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA 383 (453)
Q Consensus 304 ~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~ 383 (453)
.+.+++++.++.+..+|+++|+.+..... .. ...+..+++.+..++.++ .+..+|..+|+.+......+
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~--~~~~~~~~~~l~~~~~~g-------~l~~~d~~tG~~~w~~~~~~ 307 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKREL--GS--VNDFIVDGNRIYLVDQND-------RVMALTIDGGVTLWTQSDLL 307 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECC--CC--EEEEEEETTEEEEEETTC-------CEEEEETTTCCEEEEECTTT
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccC--CC--CCCceEECCEEEEEcCCC-------eEEEEECCCCcEEEeecccC
Confidence 44456666678999999999986654321 11 234555688888888888 88999999998776654211
Q ss_pred C-CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE-E-EecCCCEEEEE-eCCcEEEEe
Q 046773 384 D-RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI-A-FVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 384 ~-~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~-a-~s~d~~~lasg-~D~~IklWD 450 (453)
. .....+. .++.+..++. +.|.++|.++|+.+..++..... +. . +..++ .|..+ .|+.|..+|
T Consensus 308 ~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~-~~~~~~~~~~-~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 308 HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSG-FQTEPVAADG-KLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTC-BCSCCEEETT-EEEEEBTTSCEEEEE
T ss_pred CCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCc-ceeCCEEECC-EEEEEeCCCEEEEEe
Confidence 1 1112221 3566766666 89999999999998877643333 32 1 12344 45445 899999887
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.05 E-value=4.6e-08 Score=92.06 Aligned_cols=229 Identities=8% Similarity=-0.027 Sum_probs=133.5
Q ss_pred EEEEEEc--CCeEE-EEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 195 VSGIIIT--DSQLI-FATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 195 V~~i~f~--g~~La-sgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
..+++++ |+..+ +.+.++.|.+||..+ +......... . .....|+|+++|+. +++.. ++.|.+||..++.
T Consensus 26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~-~~~~~~~~~~-~-~~p~~i~~~~~g~l---~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGS-TGTTVLPFNG-L-YQPQGLAVDGAGTV---YVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCS-C-CSCCCEEECTTCCE---EEEET-TTEEEEECTTCSC
T ss_pred ccceEECCCCCEEEEccCCCCcEEEecCCC-cccceEeeCC-c-CCcceeEECCCCCE---EEEcC-CCEEEEEeCCCce
Confidence 4567775 45455 336788899988655 2111110111 0 11124899999985 23434 8899999987765
Q ss_pred EEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEEc-CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEE
Q 046773 272 VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVACT-SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAY 349 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas~-d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l 349 (453)
...- ..........+++++++. .++.. ++.|.+||..+...............-.+++++++.+
T Consensus 99 ~~~~--------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 164 (270)
T 1rwi_B 99 QTVL--------------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVY 164 (270)
T ss_dssp CEEC--------------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred Eeee--------------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEE
Confidence 2110 001113467889987764 44443 4789999877654332211111112224567778766
Q ss_pred EEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceE
Q 046773 350 IVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEV 428 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V 428 (453)
++...++ .|.+++.++................+++.+++...++... +.|.+||..+.........+... +
T Consensus 165 v~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-p 236 (270)
T 1rwi_B 165 VTDTDNN-------RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNT-P 236 (270)
T ss_dssp EEEGGGT-------EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSC-E
T ss_pred EEECCCC-------EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCC-c
Confidence 6655566 8888888765433221111134667777777754444444 89999999876544333333334 4
Q ss_pred E--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 429 I--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 429 ~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
. ++.+||+..++. .+++|+++++.
T Consensus 237 ~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 237 LAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred eeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 4 567899987887 89999999864
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-07 Score=90.24 Aligned_cols=221 Identities=11% Similarity=0.090 Sum_probs=131.8
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCC----CCEEEEE
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLD----GDIHVAV 218 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D----~tIkvWd 218 (453)
+.+++|++ +++++++.++.|.+||+++++..+.+..+. ..+.+++++ |+.+++...+ +.|.+||
T Consensus 47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK--------ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS--------SSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC--------CCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence 57888875 577889999999999999998765543222 146778886 5556665555 5788998
Q ss_pred eecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeC------CCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 219 IDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLA------GRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 219 ~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~------D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
.++ + ...+...... ......++|+|+|+.+ ++.+. ...|..+|.++++.. .+.
T Consensus 119 ~~~-~~~~~~~~~~~~-~~~~~~i~~d~~g~l~---v~~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~ 178 (333)
T 2dg1_A 119 ENG-DNLQDIIEDLST-AYCIDDMVFDSKGGFY---FTDFRGYSTNPLGGVYYVSPDFRTVT---------------PII 178 (333)
T ss_dssp TTS-CSCEEEECSSSS-CCCEEEEEECTTSCEE---EEECCCBTTBCCEEEEEECTTSCCEE---------------EEE
T ss_pred CCC-CEEEEEEccCcc-CCcccceEECCCCCEE---EEeccccccCCCceEEEEeCCCCEEE---------------Eee
Confidence 776 3 2211110000 0111248999999863 34332 244555565555521 111
Q ss_pred eeccceeEEEEcCCc--eEEEEc-CCcEEEEECCC-CceEEEE------eeccC-CeEEEEEEecCCEEEEEeCCCcccc
Q 046773 292 EFTEFVGRVRVTSHE--SAVACT-SSRVITFDLRN-QGMVLGE------RGYGR-GLYVTSVDVNAEAYIVVENRELENQ 360 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~--~~vas~-d~tIrlWDl~t-~~~~~~~------~g~~~-~~~v~~~~~~g~~l~s~s~dg~~~~ 360 (453)
.....++.+++++++ ++++.. ++.|.+||+++ ++.+... ....+ ...-.+++++|+.+++...++
T Consensus 179 ~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~---- 254 (333)
T 2dg1_A 179 QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG---- 254 (333)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT----
T ss_pred cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCC----
Confidence 222456788999886 344443 57899999974 3322111 11111 112245566777777666667
Q ss_pred CcceEEEEEcCCCeeEEEEEecCC------CeeEEEEeeCCCeEEEEeC
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLRAD------RNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~~~------~v~~~~~~~~~~~lls~s~ 403 (453)
.+.+|+. .++.+..+..... .+..++++++++.+..++.
T Consensus 255 ---~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 255 ---RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp ---EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred ---EEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence 8899987 4666666655432 4677888878777764443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.01 E-value=5.6e-07 Score=89.57 Aligned_cols=271 Identities=8% Similarity=0.054 Sum_probs=155.4
Q ss_pred ecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCcc-cc-ccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEe
Q 046773 152 LSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRL-GQ-FSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTA 229 (453)
Q Consensus 152 fs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~-~~-~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~ 229 (453)
..+..|..++.++.|..+|.+||+.+..+........ .. .......+..++..|+.++.|+.|..+|..+ |....+.
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~t-G~~~W~~ 129 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSD-GTVAWQT 129 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTT-CCEEEEE
T ss_pred EECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCC-CCEEEEE
Confidence 3567788888899999999999999877653211000 00 0012234566788888899999999999877 5211111
Q ss_pred eec-ceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceE
Q 046773 230 HFG-SVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESA 308 (453)
Q Consensus 230 ~~~-~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~ 308 (453)
... .+.. ..... ++. |+.++.|+.|..+|.++|+.+.-.....+. ..+..... ..+..+.++
T Consensus 130 ~~~~~~~~---~p~~~-~~~----v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~-----~~~~~~~~----~~~~~~~v~ 192 (376)
T 3q7m_A 130 KVAGEALS---RPVVS-DGL----VLIHTSNGQLQALNEADGAVKWTVNLDMPS-----LSLRGESA----PTTAFGAAV 192 (376)
T ss_dssp ECSSCCCS---CCEEE-TTE----EEEECTTSEEEEEETTTCCEEEEEECCC----------CCCCC----CEEETTEEE
T ss_pred eCCCceEc---CCEEE-CCE----EEEEcCCCeEEEEECCCCcEEEEEeCCCCc-----eeecCCCC----cEEECCEEE
Confidence 111 1111 01111 332 567888999999999999843110000000 00011111 223344455
Q ss_pred EEEcCCcEEEEECCCCceEEEEeeccCCeE--------E-EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 309 VACTSSRVITFDLRNQGMVLGERGYGRGLY--------V-TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 309 vas~d~tIrlWDl~t~~~~~~~~g~~~~~~--------v-~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
+++.++.|..+|+++|+.+........... + ......++.+..++.++ .+..+|..+|+.+...
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g-------~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG-------NLTALDLRSGQIMWKR 265 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS-------CEEEEETTTCCEEEEE
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc-------EEEEEECCCCcEEeec
Confidence 556678899999999987655321110000 0 11123356777777778 8888999999877655
Q ss_pred EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEec
Q 046773 380 SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl 451 (453)
.... ....+ .+++.+..++. +.|..+|.++|+.+..........+.+....+..|..+ .++.|.++|.
T Consensus 266 ~~~~--~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 266 ELGS--VNDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp CCCC--EEEEE--EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEET
T ss_pred cCCC--CCCce--EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEEC
Confidence 4322 22222 24666666666 89999999999988776522121022222234455556 7788888875
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-07 Score=89.65 Aligned_cols=231 Identities=6% Similarity=-0.031 Sum_probs=132.9
Q ss_pred EEEEEc--CCeEEE-------EeCCCCEEEEEeecCC-cceEEee-ecceecCceEEEEeCC-CceeeEEEEeeCCCeEE
Q 046773 196 SGIIIT--DSQLIF-------ATLDGDIHVAVIDDVA-NETRTAH-FGSVMDDGVLIDFTGC-SRYWVGLYAGLAGRAFH 263 (453)
Q Consensus 196 ~~i~f~--g~~Las-------gS~D~tIkvWd~~~~g-~~~~~~~-~~~v~~~~~~v~Fs~d-g~~~~~LaSgS~D~tIr 263 (453)
.+++++ +..+++ ++.++.|.+||..+ + ...+... ..........++|+++ |+.+ .++.+..|.
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~----v~~~~~~l~ 95 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT-GKKTVICKPEVNGYGGIPAGCQCDRDANQLF----VADMRLGLL 95 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTT-CCEEEEECCEETTEECCEEEEEECSSSSEEE----EEETTTEEE
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC-CcEEEEEecccCCCCCCCceEEEecCCCcEE----EEECCCCEE
Confidence 456775 555555 47788999998766 4 2222210 0000111224889999 8742 334455899
Q ss_pred EeeCCCCcEEec-ccccCCcceeeeeeeeeeccceeEEEEcCCceE-EEEcC----------------CcEEEEECCCCc
Q 046773 264 IWDRQAEEVFVG-GDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESA-VACTS----------------SRVITFDLRNQG 325 (453)
Q Consensus 264 vWD~~tg~~~~g-~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~-vas~d----------------~tIrlWDl~t~~ 325 (453)
+||.+ ++...- ... .. ......++.+++++++.+ +++.. +.|..+|.. ++
T Consensus 96 ~~d~~-g~~~~~~~~~--~~--------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 163 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKD--SE--------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ 163 (314)
T ss_dssp EEETT-SCEEECCSBC--TT--------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC
T ss_pred EEeCC-CCEEEEEecc--CC--------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC
Confidence 99998 763210 000 00 001134678999987754 44332 346666765 44
Q ss_pred eEEEEeeccCCeEEEEEE----ecCCEEEEE-eCCCccccCcceEEEEEcC-CCee-----EEEEEecC-CCeeEEEEee
Q 046773 326 MVLGERGYGRGLYVTSVD----VNAEAYIVV-ENRELENQNRRLAIVRRVD-TFEE-----VCRFSLRA-DRNVNVMGCM 393 (453)
Q Consensus 326 ~~~~~~g~~~~~~v~~~~----~~g~~l~s~-s~dg~~~~~~~~i~Iw~~~-tg~~-----v~~l~~~~-~~v~~~~~~~ 393 (453)
...... +.....-.+++ ++++.+..+ +.++ .+.+|+.+ +++. ...+..+. .....+++++
T Consensus 164 ~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~-------~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 164 MIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTK-------KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp EEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTT-------EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred EEEecc-CCCCcceEEEecccCCCCCEEEEEECCCC-------eEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 322211 11122234566 666555444 4456 78888876 4531 11121111 3356677777
Q ss_pred CCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEE-EEE-eCCcEEEEecC
Q 046773 394 NQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHV-AAS-CGTNIHLWDFG 452 (453)
Q Consensus 394 ~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~l-asg-~D~~IklWDl~ 452 (453)
++...++... +.|.+||.++|+.+..+..+... +. +|+||+++| ++. .++.|..+|+.
T Consensus 236 ~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 236 DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEK-PSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSC-EEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCC-ceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 8776666655 89999999989888877766555 65 566899855 555 67899999865
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-07 Score=100.70 Aligned_cols=286 Identities=7% Similarity=0.009 Sum_probs=162.5
Q ss_pred cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccc--cc-eEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEe
Q 046773 153 SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQF--SR-AVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTA 229 (453)
Q Consensus 153 s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~--s~-~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~ 229 (453)
.+..|..++.|+.|.-+|++||+.+.++..+........ .. .-+++++++.+|+.++.|+.+..+|..+ |...-+.
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~T-G~~~W~~ 147 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKT-GQRAWSV 147 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTT-CCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCC-CCEeeee
Confidence 466777788899999999999999998864322100000 00 0123456788899999999999999887 6211111
Q ss_pred eec-ceecCceEEEEeC---CCceeeEEEEee------CCCeEEEeeCCCCcEEec-cccc-CCcce-------------
Q 046773 230 HFG-SVMDDGVLIDFTG---CSRYWVGLYAGL------AGRAFHIWDRQAEEVFVG-GDLT-DHNTV------------- 284 (453)
Q Consensus 230 ~~~-~v~~~~~~v~Fs~---dg~~~~~LaSgS------~D~tIrvWD~~tg~~~~g-~~l~-~~~~v------------- 284 (453)
... .. .....+..+| +++ ++.++ .|+.|..+|.+||+++-- ...+ ++...
T Consensus 148 ~~~~~~-~~~~~~~~sP~v~~g~----v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 148 DTRADH-KRSYTITGAPRVVNGK----VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp ECCSCT-TSCCBCCSCCEEETTE----EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred cCcCCC-CCCccccCCcEEECCE----EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 111 00 0000011111 333 23332 378999999999994311 0000 00000
Q ss_pred --eeeeeeeeeccceeEEEEcCCc--eEEEEcCC-------------------cEEEEECCCCceEEEEee--cc-----
Q 046773 285 --MGWRMLTEFTEFVGRVRVTSHE--SAVACTSS-------------------RVITFDLRNQGMVLGERG--YG----- 334 (453)
Q Consensus 285 --~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~-------------------tIrlWDl~t~~~~~~~~g--~~----- 334 (453)
..|....+....-..+.++++. +++++.++ .|..+|++||+.+-.... |.
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~ 302 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYT 302 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCC
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccccc
Confidence 0000000111111246677633 34444443 499999999987755421 21
Q ss_pred --CCeEEEEEEecCC---EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC-CCe----------------------
Q 046773 335 --RGLYVTSVDVNAE---AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-DRN---------------------- 386 (453)
Q Consensus 335 --~~~~v~~~~~~g~---~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-~~v---------------------- 386 (453)
....+..+.++|. .++.++.+| .+.++|..||+.+....+.+ .+.
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G-------~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~ 375 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAPKNG-------FFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKN 375 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTS-------EEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTS
T ss_pred CCCCcEEEeeccCCcEEEEEEEECCCC-------eEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCC
Confidence 1112223445564 567778888 99999999999875544332 010
Q ss_pred ----------------eEEEEeeCCCeEEEEe----------------------------------------------CC
Q 046773 387 ----------------VNVMGCMNQGYALMCV----------------------------------------------EG 404 (453)
Q Consensus 387 ----------------~~~~~~~~~~~lls~s----------------------------------------------~~ 404 (453)
..++++|+.+.+.+.+ ++
T Consensus 376 ~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g 455 (689)
T 1yiq_A 376 GKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSG 455 (689)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEE
T ss_pred CCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcce
Confidence 0134555555444321 16
Q ss_pred eEEEEECCCCeEEEEecccCCceEE-EEecCCCEEEEE-eCCcEEEEecC
Q 046773 405 VIRVWEVEGGEYMYSFRERIGEEVI-AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 405 tIrlWD~~tG~~l~tL~gh~~~~V~-a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+|+.||+.||+.+..++.+... .. .++..+..|..+ .|+.|+.||..
T Consensus 456 ~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 456 KLIAWDPVKQQAAWEVPYVTIF-NGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp EEEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred eEEEEECCCCCeEeEccCCCCc-cCccceECCCEEEEECCCCcEEEEECC
Confidence 7999999999999888655432 21 566677788888 99999999964
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-06 Score=92.39 Aligned_cols=272 Identities=13% Similarity=0.079 Sum_probs=166.3
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECC--CCeEEEEecCCCCCccccccceEEEEEEc------CCeEEEE-eCCCCEE
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLT--TRLHVRTFRPQHSDRLGQFSRAVSGIIIT------DSQLIFA-TLDGDIH 215 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~--tg~~~~tl~gh~~~~~~~~s~~V~~i~f~------g~~Lasg-S~D~tIk 215 (453)
+.++.||+ ++|.+++.|++|.+||+. +++.+.++.... ....++|+ |+.++.+ -.+++|.
T Consensus 199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ 269 (567)
T 1qks_A 199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---------EARSIETSKMEGWEDKYAIAGAYWPPQYV 269 (567)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---------EEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---------CCceeEEccccCCCCCEEEEEEccCCeEE
Confidence 45788875 688889999999999996 999888886322 12446665 6666655 4579999
Q ss_pred EEEeecCCcceEEe-eecce-------ecC--ceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCccee
Q 046773 216 VAVIDDVANETRTA-HFGSV-------MDD--GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVM 285 (453)
Q Consensus 216 vWd~~~~g~~~~~~-~~~~v-------~~~--~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~ 285 (453)
|+|..+ . ..+.. ..+.. ..+ ...+.+++++..+ +++-..++.|.+.|..+.+.+.-
T Consensus 270 ViD~~t-~-~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~--vv~~~~~g~v~~vd~~~~~~~~v---------- 335 (567)
T 1qks_A 270 IMDGET-L-EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF--IVNVKETGKILLVDYTDLNNLKT---------- 335 (567)
T ss_dssp EEETTT-C-CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE--EEEETTTTEEEEEETTCSSEEEE----------
T ss_pred EEECCC-C-cEEEEEeccccccccccccCCCceEEEEEcCCCCEE--EEEecCCCeEEEEecCCCcccee----------
Confidence 999766 3 22221 11110 001 1236678876642 44556778999999887652210
Q ss_pred eeeeeeeeccceeEEEEcCCc--eEEEEc-CCcEEEEECCCCceEEEE-e-e---ccCCeEEEEEEecCCEEEEEe--CC
Q 046773 286 GWRMLTEFTEFVGRVRVTSHE--SAVACT-SSRVITFDLRNQGMVLGE-R-G---YGRGLYVTSVDVNAEAYIVVE--NR 355 (453)
Q Consensus 286 ~w~~l~~h~~~v~~v~~s~~~--~~vas~-d~tIrlWDl~t~~~~~~~-~-g---~~~~~~v~~~~~~g~~l~s~s--~d 355 (453)
..+ ........+.|+|++ +++++. +++|.++|+++++.+... . + |.... ..-+++++..+...+ .+
T Consensus 336 --~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g-~~~~~p~~g~v~~t~~~g~ 411 (567)
T 1qks_A 336 --TEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG-ANFVHPTFGPVWATSHMGD 411 (567)
T ss_dssp --EEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC-EEEEETTTEEEEEEEBSSS
T ss_pred --eee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccc-eeeECCCCCcEEEeCCCCC
Confidence 000 111234456788876 355553 578999999998755443 3 2 21111 122566655444333 34
Q ss_pred CccccCcceEEEEEcCC-------CeeEEEEEecCCCeeEEEEeeCCCeEEEEe--------CCeEEEEECCCC-----e
Q 046773 356 ELENQNRRLAIVRRVDT-------FEEVCRFSLRADRNVNVMGCMNQGYALMCV--------EGVIRVWEVEGG-----E 415 (453)
Q Consensus 356 g~~~~~~~~i~Iw~~~t-------g~~v~~l~~~~~~v~~~~~~~~~~~lls~s--------~~tIrlWD~~tG-----~ 415 (453)
+ +|.|++.++ -+.++++...+..-.-+..+|+++++.... +++|-|.|+.+. .
T Consensus 412 ~-------~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 412 D-------SVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp S-------EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred C-------eEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 5 999999987 456777776543333455688888887655 149999999876 2
Q ss_pred -EEEEec-c------cCCceEE--EEecCCCEEEEE-e-----CCcEEEEecC
Q 046773 416 -YMYSFR-E------RIGEEVI--AFVGDDRHVAAS-C-----GTNIHLWDFG 452 (453)
Q Consensus 416 -~l~tL~-g------h~~~~V~--a~s~d~~~lasg-~-----D~~IklWDl~ 452 (453)
+...+. + ..+..++ .|.|||+.|-.+ . ++.|-|.|..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~ 537 (567)
T 1qks_A 485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK 537 (567)
T ss_dssp CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence 223332 1 1122254 788999976433 2 6889998853
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.98 E-value=6.6e-08 Score=90.93 Aligned_cols=232 Identities=7% Similarity=-0.060 Sum_probs=132.5
Q ss_pred EEEEEecC--CEEE-EEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLSD--LYLA-CGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs~--~~La-SGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~ 221 (453)
..++++++ ++.+ +.+.++.|.+||..++........+.. .+.+|+++ ++..++.. ++.|.+||.++
T Consensus 26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~ 96 (270)
T 1rwi_B 26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY--------QPQGLAVDGAGTVYVTDF-NNRVVTLAAGS 96 (270)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCC--------SCCCEEECTTCCEEEEET-TTEEEEECTTC
T ss_pred ccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcC--------CcceeEECCCCCEEEEcC-CCEEEEEeCCC
Confidence 57888875 5666 557889999999877764322111111 23457776 45444444 88899998765
Q ss_pred CCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 222 VANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 222 ~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
.-...+.. .. ......++|+|+|+. +++.+.++.|.+||..+...... ..........++
T Consensus 97 ~~~~~~~~--~~-~~~p~~i~~~~~g~l---~v~~~~~~~i~~~~~~~~~~~~~--------------~~~~~~~p~~i~ 156 (270)
T 1rwi_B 97 NNQTVLPF--DG-LNYPEGLAVDTQGAV---YVADRGNNRVVKLAAGSKTQTVL--------------PFTGLNDPDGVA 156 (270)
T ss_dssp SCCEECCC--CS-CSSEEEEEECTTCCE---EEEEGGGTEEEEECTTCCSCEEC--------------CCCSCCSCCCEE
T ss_pred ceEeeeec--CC-cCCCcceEECCCCCE---EEEECCCCEEEEEECCCceeEee--------------ccccCCCceeEE
Confidence 11111110 10 011224899999985 44556678999998766542110 001113456788
Q ss_pred EcCCce-EEEEc-CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 302 VTSHES-AVACT-SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 302 ~s~~~~-~vas~-d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
+++++. .++.. ++.|.+||+.+.........+.....-.+++++|..+++...++ .+.+++.++..... +
T Consensus 157 ~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~-------~v~~~~~~~~~~~~-~ 228 (270)
T 1rwi_B 157 VDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN-------QVVKLLAGSTTSTV-L 228 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTS-------CEEEECTTCSCCEE-C
T ss_pred EeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCC-------cEEEEcCCCCccee-e
Confidence 887654 44443 47899999987654322211112223345566666666655566 78888876543322 2
Q ss_pred Ee-cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCe
Q 046773 380 SL-RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGE 415 (453)
Q Consensus 380 ~~-~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~ 415 (453)
.. .......+++++++...++... ++|+++++...+
T Consensus 229 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 229 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 11 1234677888888775555555 999999987654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.96 E-value=5.1e-07 Score=86.60 Aligned_cols=236 Identities=14% Similarity=0.123 Sum_probs=139.1
Q ss_pred EEEEEecC--CEEEE-------EeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC--eEEEEeCCCCEE
Q 046773 147 CRCLTLSD--LYLAC-------GFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS--QLIFATLDGDIH 215 (453)
Q Consensus 147 v~~lafs~--~~LaS-------GS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~--~LasgS~D~tIk 215 (453)
..+++|++ .++++ ++.++.|.+||..+++......+ ... .....+.+++++.+ .|..++.+..|.
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~---~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-EVN---GYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-EET---TEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec-ccC---CCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 36788864 56777 67889999999999986432221 000 00124667888644 555555555788
Q ss_pred EEEeecCCcceE-Eeee-cceecCceEEEEeCCCceeeEEEEeeCC---------------CeEEEeeCCCCcEEecccc
Q 046773 216 VAVIDDVANETR-TAHF-GSVMDDGVLIDFTGCSRYWVGLYAGLAG---------------RAFHIWDRQAEEVFVGGDL 278 (453)
Q Consensus 216 vWd~~~~g~~~~-~~~~-~~v~~~~~~v~Fs~dg~~~~~LaSgS~D---------------~tIrvWD~~tg~~~~g~~l 278 (453)
+||.+. ....+ .... +.-......++++++|+.| ++.+.+ +.|..+|.. ++...
T Consensus 96 ~~d~~g-~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~---v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~---- 166 (314)
T 1pjx_A 96 VVQTDG-TFEEIAKKDSEGRRMQGCNDCAFDYEGNLW---ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ---- 166 (314)
T ss_dssp EEETTS-CEEECCSBCTTSCBCBCCCEEEECTTSCEE---EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE----
T ss_pred EEeCCC-CEEEEEeccCCCccccCCcCEEECCCCCEE---EEecCcccccccccccccCCCCeEEEECCC-CCEEE----
Confidence 888662 11111 1100 0000112248999999863 344433 456666665 54210
Q ss_pred cCCcceeeeeeeeeeccceeEEEEc----CCc--eEEEEc-CCcEEEEECC-CCceE-----EEEeecc-CCeEEEEEEe
Q 046773 279 TDHNTVMGWRMLTEFTEFVGRVRVT----SHE--SAVACT-SSRVITFDLR-NQGMV-----LGERGYG-RGLYVTSVDV 344 (453)
Q Consensus 279 ~~~~~v~~w~~l~~h~~~v~~v~~s----~~~--~~vas~-d~tIrlWDl~-t~~~~-----~~~~g~~-~~~~v~~~~~ 344 (453)
+..+....+.++++ +++ +.++.. ++.|.+||++ ++... ....++. ....-.++++
T Consensus 167 -----------~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 167 -----------VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp -----------EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred -----------eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 11222345678888 876 345443 5789999987 44321 1111111 1122234566
Q ss_pred cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCC
Q 046773 345 NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEG 413 (453)
Q Consensus 345 ~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~t 413 (453)
+|+.+++...++ .|.+|+.++++.+..+......+..++++++++++..++. +.|..+|+.+
T Consensus 236 ~G~l~v~~~~~~-------~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 236 DNNLLVANWGSS-------HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCCEEEEEETTT-------EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCC-------EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 777777666677 8899998878777777665566788888888886665554 6999999875
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.90 E-value=8e-07 Score=90.91 Aligned_cols=186 Identities=12% Similarity=0.036 Sum_probs=110.2
Q ss_pred EEEeCCCceeeEEEEeeCCC--eEEEeeCCCCcEEecccccCCcceeeeeee-eeeccceeEEEEcC-CceEEEE-cCCc
Q 046773 241 IDFTGCSRYWVGLYAGLAGR--AFHIWDRQAEEVFVGGDLTDHNTVMGWRML-TEFTEFVGRVRVTS-HESAVAC-TSSR 315 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~--tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l-~~h~~~v~~v~~s~-~~~~vas-~d~t 315 (453)
++|+|+|+. |+++..++ .|.++|..++....- ...+ ......+..++++| ++.+..+ .+++
T Consensus 176 ia~~~~g~~---l~~~d~~~~~~I~~~d~~~~~~~~~-----------~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~ 241 (409)
T 3hrp_A 176 PAVTKDKQR---VYSIGWEGTHTVYVYMKASGWAPTR-----------IGQLGSTFSGKIGAVALDETEEWLYFVDSNKN 241 (409)
T ss_dssp CEECTTSSE---EEEEBSSTTCEEEEEEGGGTTCEEE-----------EEECCTTSCSCCCBCEECTTSSEEEEECTTCE
T ss_pred eeEecCCCc---EEEEecCCCceEEEEEcCCCceeEE-----------eeeccchhcCCcEEEEEeCCCCeEEEEECCCc
Confidence 567777774 55555544 677777765542100 0000 10124456788988 5544434 3468
Q ss_pred EEEEECCCCceEEE----EeeccCCe-E-EEEEEec-CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC-----
Q 046773 316 VITFDLRNQGMVLG----ERGYGRGL-Y-VTSVDVN-AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA----- 383 (453)
Q Consensus 316 IrlWDl~t~~~~~~----~~g~~~~~-~-v~~~~~~-g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~----- 383 (453)
|+.||+.++..... ..+..... . -.+|+++ +..+++-+..+ .|++++.+.. +..+..+.
T Consensus 242 I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~-------~I~~~~~~g~--~~~~~g~~~~~g~ 312 (409)
T 3hrp_A 242 FGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS-------SVYKITPDGE--CEWFCGSATQKTV 312 (409)
T ss_dssp EEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT-------EEEEECTTCC--EEEEEECTTCCSC
T ss_pred EEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC-------EEEEEecCCC--EEEEEeCCCCCCc
Confidence 99999998754332 11111111 1 3567775 44455544455 7777766533 44444432
Q ss_pred ----------CCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCCeEEEEeccc---------------CCceEE--EEecC
Q 046773 384 ----------DRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGGEYMYSFRER---------------IGEEVI--AFVGD 434 (453)
Q Consensus 384 ----------~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG~~l~tL~gh---------------~~~~V~--a~s~d 434 (453)
.....+++++++...++-+ . +.|+.||+.+|+ +.++.|+ ... .+ ++.+|
T Consensus 313 ~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~-P~giavd~~ 390 (409)
T 3hrp_A 313 QDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNY-PYDICYDGE 390 (409)
T ss_dssp BCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSS-EEEEEECSS
T ss_pred CCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCC-ceEEEEcCC
Confidence 2356788888887666666 6 899999988887 4556555 122 33 67788
Q ss_pred CCEEEEE-eCCcEEEEec
Q 046773 435 DRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 435 ~~~lasg-~D~~IklWDl 451 (453)
+..+++- ..+.|+..++
T Consensus 391 g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 391 GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SEEEEEESTTCEEEEEEE
T ss_pred CCEEEEECCCCeEEEEEe
Confidence 8777777 7788887765
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-06 Score=95.26 Aligned_cols=283 Identities=8% Similarity=0.046 Sum_probs=164.8
Q ss_pred cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCcccc--cc-ceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEe
Q 046773 153 SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQ--FS-RAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTA 229 (453)
Q Consensus 153 s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~--~s-~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~ 229 (453)
.+..|..++.++.|.-+|+.||+.+.++.........+ +. ...+++++++.+|+.++.|+.+..+|..+ |...-+.
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~t-G~~~W~~ 154 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAAT-GKEVWHQ 154 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTT-CCEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCC-CCEEeee
Confidence 45667777889999999999999998886432110000 00 01134566788999999999999999887 6211111
Q ss_pred eec------ceecCceEEEEeCCCceeeEEEEeeC------CCeEEEeeCCCCcEEecccccCCc------------cee
Q 046773 230 HFG------SVMDDGVLIDFTGCSRYWVGLYAGLA------GRAFHIWDRQAEEVFVGGDLTDHN------------TVM 285 (453)
Q Consensus 230 ~~~------~v~~~~~~v~Fs~dg~~~~~LaSgS~------D~tIrvWD~~tg~~~~g~~l~~~~------------~v~ 285 (453)
... ......-.+ . +++ ++.++. |+.|..+|.+||+.+--.....+. ...
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~-~~~----v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~ 227 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--F-KGK----VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAAR 227 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--E-TTE----EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred cCCcCcCcCcccccCcEE--E-CCE----EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccc
Confidence 111 000000011 1 232 334432 789999999999943110000000 000
Q ss_pred eee----ee--eeeccceeEEEEcCCc--eEEEEcC-------------------CcEEEEECCCCceEEEEe-e-cc--
Q 046773 286 GWR----ML--TEFTEFVGRVRVTSHE--SAVACTS-------------------SRVITFDLRNQGMVLGER-G-YG-- 334 (453)
Q Consensus 286 ~w~----~l--~~h~~~v~~v~~s~~~--~~vas~d-------------------~tIrlWDl~t~~~~~~~~-g-~~-- 334 (453)
.|. .. .+.......+.++++. +++++.+ .+|..+|++||+.+-... . |.
T Consensus 228 ~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w 307 (677)
T 1kb0_A 228 TWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW 307 (677)
T ss_dssp TSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred cccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence 010 00 0111111345666543 3444333 259999999998765532 1 21
Q ss_pred -----CCeEEEEEEecC---CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC-Ce-------------------
Q 046773 335 -----RGLYVTSVDVNA---EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD-RN------------------- 386 (453)
Q Consensus 335 -----~~~~v~~~~~~g---~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~-~v------------------- 386 (453)
..-.+..+..+| ..++.++.+| .+.++|..||+.+..+.+.+. +.
T Consensus 308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G-------~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 380 (677)
T 1kb0_A 308 DYTSTQPMILADIKIAGKPRKVILHAPKNG-------FFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGS 380 (677)
T ss_dssp CCCCCSCCEEEEEEETTEEEEEEEECCTTS-------EEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTT
T ss_pred ccccCCCcEEEecccCCcEeeEEEEECCCC-------EEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCC
Confidence 112233344567 5677788888 999999999998877654321 00
Q ss_pred ---------------eEEEEeeCCCeEEEEe-------------------------------------------C-CeEE
Q 046773 387 ---------------VNVMGCMNQGYALMCV-------------------------------------------E-GVIR 407 (453)
Q Consensus 387 ---------------~~~~~~~~~~~lls~s-------------------------------------------~-~tIr 407 (453)
..++++++.+.+.+.+ . ++|.
T Consensus 381 ~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~ 460 (677)
T 1kb0_A 381 KPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLL 460 (677)
T ss_dssp SCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEE
T ss_pred CccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEE
Confidence 1345666666655421 1 6899
Q ss_pred EEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 408 VWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 408 lWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.||+.||+.+-.++.. .. ++ .++.++..|..+ .|+.+++||..
T Consensus 461 A~D~~tG~~~W~~~~~-~~-~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 461 AWDPVAQKAAWSVEHV-SP-WNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp EEETTTTEEEEEEEES-SS-CCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred EEeCCCCcEEeecCCC-CC-CcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 9999999998877532 22 23 567778888878 99999999974
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-07 Score=102.02 Aligned_cols=192 Identities=9% Similarity=0.064 Sum_probs=118.4
Q ss_pred EEEeCCCceeeEEE--EeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc-CCceEEEEcCC---
Q 046773 241 IDFTGCSRYWVGLY--AGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT-SHESAVACTSS--- 314 (453)
Q Consensus 241 v~Fs~dg~~~~~La--SgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s-~~~~~vas~d~--- 314 (453)
++|||||++++... +|+.+.+|+|||++||+.+.. ++.+.. ...+.++ ++.++.++.+.
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-------------~~~~~k--~~~~~WsDg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-------------PLKDVK--FSGISWLGNEGFFYSSYDKPDG 198 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-------------EEEEEE--SCCCEEETTTEEEEEESSCCC-
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-------------ccCCce--eccEEEeCCCEEEEEEecCccc
Confidence 68999999743222 345557899999999985421 111110 1234454 44456666553
Q ss_pred ----------cEEEEECCCCce----EEEEee-ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe-eEEE
Q 046773 315 ----------RVITFDLRNQGM----VLGERG-YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE-EVCR 378 (453)
Q Consensus 315 ----------tIrlWDl~t~~~----~~~~~g-~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~-~v~~ 378 (453)
.|++|++.+++. +..... +.....-..++++|+.++..+..+. ..+.+.++++++++ +...
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceEE
Confidence 399999998752 222222 2222333567888988765544331 12377888887763 4556
Q ss_pred EEecCCCeeEEEEeeCCCeEEEEeC-----CeEEEEECCCCeE--EEEecccCCceEEEEecCCCEEEEE--eCC--cEE
Q 046773 379 FSLRADRNVNVMGCMNQGYALMCVE-----GVIRVWEVEGGEY--MYSFRERIGEEVIAFVGDDRHVAAS--CGT--NIH 447 (453)
Q Consensus 379 l~~~~~~v~~~~~~~~~~~lls~s~-----~tIrlWD~~tG~~--l~tL~gh~~~~V~a~s~d~~~lasg--~D~--~Ik 447 (453)
+..+.+..... ++++++.++..+. ..|.+||+.++++ ..+|..|....+ .+++++++|+.. .|+ .|+
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEEETTEEEEEEEETTEEEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEEECCEEEEEEEECCeeEEE
Confidence 66655554444 5667777765442 5899999998765 456666665535 999999988765 555 688
Q ss_pred EEecC
Q 046773 448 LWDFG 452 (453)
Q Consensus 448 lWDl~ 452 (453)
+||+.
T Consensus 354 ~~d~~ 358 (693)
T 3iuj_A 354 QFDYE 358 (693)
T ss_dssp EECTT
T ss_pred EEECC
Confidence 88763
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-06 Score=94.85 Aligned_cols=278 Identities=11% Similarity=0.026 Sum_probs=155.6
Q ss_pred EEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCC-CCC-ccccccceEEEEEEcCCeEEEEeC------CCCEEEEEee
Q 046773 149 CLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQ-HSD-RLGQFSRAVSGIIITDSQLIFATL------DGDIHVAVID 220 (453)
Q Consensus 149 ~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh-~~~-~~~~~s~~V~~i~f~g~~LasgS~------D~tIkvWd~~ 220 (453)
.+++.+..|..++.|+.|..+|++||+.+.++..+ ... .....+ +..+.+.+++.++. |+.|+.+|..
T Consensus 123 ~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~----~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~ 198 (677)
T 1kb0_A 123 GVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITG----APRVFKGKVIIGNGGAEYGVRGYITAYDAE 198 (677)
T ss_dssp CCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCS----CCEEETTEEEECCBCTTTCCBCEEEEEETT
T ss_pred CceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCccccc----CcEEECCEEEEEecccccCCCCEEEEEECC
Confidence 34556778899999999999999999999888753 100 001101 11233555665553 6889998887
Q ss_pred cCCcceEEeeeccee---------------------------cCc---eEEEEeCCCceeeEEEEeeCCC----------
Q 046773 221 DVANETRTAHFGSVM---------------------------DDG---VLIDFTGCSRYWVGLYAGLAGR---------- 260 (453)
Q Consensus 221 ~~g~~~~~~~~~~v~---------------------------~~~---~~v~Fs~dg~~~~~LaSgS~D~---------- 260 (453)
+ |...-+.....-. ... ..++|+|++.. |+.++.+.
T Consensus 199 t-G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~---vy~~~~~~~~w~~~~~~~ 274 (677)
T 1kb0_A 199 T-GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNT---MYVGTGNGSPWSHKVRSP 274 (677)
T ss_dssp T-CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTE---EEEECCCEESSCHHHHST
T ss_pred C-CcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCE---EEEECCCCccccCCCCCc
Confidence 7 5222111110000 000 13688888775 55555443
Q ss_pred ---------eEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee-EEEEcC---CceEEEEcCCcEEEEECCCCceE
Q 046773 261 ---------AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG-RVRVTS---HESAVACTSSRVITFDLRNQGMV 327 (453)
Q Consensus 261 ---------tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~-~v~~s~---~~~~vas~d~tIrlWDl~t~~~~ 327 (453)
+|..+|.+||+..--..+..+. .|. ......++. ....++ +.+++++.++.+.++|.+||+.+
T Consensus 275 ~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d---~wd-~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 275 KGGDNLYLASIVALDPDTGKYKWHYQETPGD---NWD-YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI 350 (677)
T ss_dssp TCCCCTTTTEEEEECTTTCCEEEEEESSTTC---CSC-CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred cCCCCeeeEEEEEEECCCCCEEEEEecCCCc---ccc-cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence 5999999999943100000000 000 000011211 111222 12344455689999999999876
Q ss_pred EEEe-eccC--------CeE--------------------------EEEEEecCCEEEEEeCC-------------C---
Q 046773 328 LGER-GYGR--------GLY--------------------------VTSVDVNAEAYIVVENR-------------E--- 356 (453)
Q Consensus 328 ~~~~-g~~~--------~~~--------------------------v~~~~~~g~~l~s~s~d-------------g--- 356 (453)
.+.. .... ... -.+++++...+++.+.+ +
T Consensus 351 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~ 430 (677)
T 1kb0_A 351 SAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAG 430 (677)
T ss_dssp EEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCC
T ss_pred ccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccc
Confidence 5432 1100 000 13567766776665432 0
Q ss_pred --------cc------------ccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCe
Q 046773 357 --------LE------------NQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGE 415 (453)
Q Consensus 357 --------~~------------~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~ 415 (453)
.. ......+..||..|++.+-.+..... .....+..+++.++.++. +++++||++||+
T Consensus 431 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 431 PGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP-WNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp TTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCC-CcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 00 00124789999999998877764321 223344556777776665 999999999999
Q ss_pred EEEEecccCCce--EEEEecCCCEEE
Q 046773 416 YMYSFRERIGEE--VIAFVGDDRHVA 439 (453)
Q Consensus 416 ~l~tL~gh~~~~--V~a~s~d~~~la 439 (453)
.+.++.-..+.. -..+.+||+..+
T Consensus 510 ~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 510 KLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred eeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 999986443220 124458887544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-05 Score=74.12 Aligned_cols=264 Identities=9% Similarity=-0.030 Sum_probs=148.9
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~ 222 (453)
+.++++++ ++.++...++.|.+||.. ++... +.-... ...+.+++++ +...++...++.|.++|.+.
T Consensus 22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~------~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g- 92 (300)
T 2qc5_A 22 PYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTP------DAKVMCLIVSSLGDIWFTENGANKIGKLSKKG- 92 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSST------TCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred cceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCC------CCcceeEEECCCCCEEEEecCCCeEEEECCCC-
Confidence 67888874 577777788999999998 66443 221110 0146678876 44455544567788887652
Q ss_pred CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 223 ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 223 g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
....+...... .....++++++|+.+ ++...++.|..+|.+ ++...- .+......+..+.+
T Consensus 93 ~~~~~~~~~~~--~~~~~i~~~~~g~l~---v~~~~~~~i~~~~~~-g~~~~~-------------~~~~~~~~~~~i~~ 153 (300)
T 2qc5_A 93 GFTEYPLPQPD--SGPYGITEGLNGDIW---FTQLNGDRIGKLTAD-GTIYEY-------------DLPNKGSYPAFITL 153 (300)
T ss_dssp CEEEEECSSTT--CCEEEEEECSTTCEE---EEETTTTEEEEECTT-SCEEEE-------------ECSSTTCCEEEEEE
T ss_pred CeEEecCCCCC--CCCccceECCCCCEE---EEccCCCeEEEECCC-CCEEEc-------------cCCCCCCCceeEEE
Confidence 12212111000 112248899999853 345557889999987 663210 01111235677888
Q ss_pred cCCc-eEEEEc-CCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE
Q 046773 303 TSHE-SAVACT-SSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF 379 (453)
Q Consensus 303 s~~~-~~vas~-d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l 379 (453)
++++ +.++.. ++.|..+|. +++..... ..+.....-.+++++++.+++....+ .+.+++. +++.. .+
T Consensus 154 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-------~i~~~~~-~g~~~-~~ 223 (300)
T 2qc5_A 154 GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN-------KIGRITT-TGEIS-EY 223 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT-------EEEEECT-TCCEE-EE
T ss_pred CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCC-------EEEEEcC-CCcEE-EE
Confidence 8766 445544 468999998 55433211 11222222334556666665544455 6777776 44432 22
Q ss_pred Ee--cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEE-EEecccCCceEE--EEecCCCEEEEEeCCcEEEEec
Q 046773 380 SL--RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYM-YSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 380 ~~--~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l-~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl 451 (453)
.. .......+++.+++...++... +.|..+|. +|+.. ..+...... +. ++.++|+..++... .|...|.
T Consensus 224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~-~~~i~~~~~g~l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAE-PHGITFGKDGSVWFALKC-KIGKLNL 298 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCC-CCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCc-cceeEeCCCCCEEEEccC-ceEEeCC
Confidence 22 2234667777777765555544 89999998 56543 233322333 44 55688887665553 5555553
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.7e-07 Score=97.38 Aligned_cols=230 Identities=12% Similarity=0.082 Sum_probs=137.4
Q ss_pred eEEEEEE--cCCeEEEEe-----CCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCe-----
Q 046773 194 AVSGIII--TDSQLIFAT-----LDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRA----- 261 (453)
Q Consensus 194 ~V~~i~f--~g~~LasgS-----~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~t----- 261 (453)
.+.+++| ||++||.+. .+.+|+|+|+++ | ..+..+...+.. ..++|+ ||+. |+..+.|.+
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t-g-~~~~~~~~~~k~--~~~~Ws-Dg~~---l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES-K-QPLETPLKDVKF--SGISWL-GNEG---FFYSSYDKPDGSEL 201 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT-C-SEEEEEEEEEES--CCCEEE-TTTE---EEEEESSCCC----
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC-C-CCCccccCCcee--ccEEEe-CCCE---EEEEEecCcccccc
Confidence 3455555 577888543 235799999988 5 223322222200 136899 9986 566676644
Q ss_pred --------EEEeeCCCCc---EEecccccCCcceeeeeeeee-eccceeEEEEcCCce--EEEEc-C---CcEEEEECCC
Q 046773 262 --------FHIWDRQAEE---VFVGGDLTDHNTVMGWRMLTE-FTEFVGRVRVTSHES--AVACT-S---SRVITFDLRN 323 (453)
Q Consensus 262 --------IrvWD~~tg~---~~~g~~l~~~~~v~~w~~l~~-h~~~v~~v~~s~~~~--~vas~-d---~tIrlWDl~t 323 (453)
|++|++.+++ .+. ..... |..+...+.++|++. ++.+. + ..|.++|+.+
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v-------------~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLV-------------FGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEE-------------ESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred cccCCCcEEEEEECCCCcccceEE-------------EecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence 9999998865 111 01112 333456788898874 33332 2 4799999987
Q ss_pred Cc-eEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee--EEEEEecCCCeeEEEEeeCCCeEEE
Q 046773 324 QG-MVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE--VCRFSLRADRNVNVMGCMNQGYALM 400 (453)
Q Consensus 324 ~~-~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~--v~~l~~~~~~v~~~~~~~~~~~lls 400 (453)
+. ...++..+..... ..++++++.++..+..+. ....+.+++++++++ ...+..+...+. .+++++++++.
T Consensus 269 ~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 269 ENAPLLTVQGDLDADV-SLVDNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp TTCCCEEEECSSSSCE-EEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred CCCceEEEeCCCCceE-EEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence 63 3333333332222 237788888766655431 122677778887654 355666655554 77888888876
Q ss_pred EeC----CeEEEEECCCCeEEEEecc-cCCceEEE--EecCCCEEEEE-eC----CcEEEEecC
Q 046773 401 CVE----GVIRVWEVEGGEYMYSFRE-RIGEEVIA--FVGDDRHVAAS-CG----TNIHLWDFG 452 (453)
Q Consensus 401 ~s~----~tIrlWD~~tG~~l~tL~g-h~~~~V~a--~s~d~~~lasg-~D----~~IklWDl~ 452 (453)
... ..|++||+.++. ++.+.- ..+. +.. +++|++.|+.. .+ ++|.+||+.
T Consensus 343 ~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~-~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 343 EYMVDATARVEQFDYEGKR-VREVALPGLGS-VSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp EEEETTEEEEEEECTTSCE-EEEECCSSSSE-EEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCeeEEEEEECCCCe-eEEeecCCCce-EEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 653 489999998554 455532 3344 553 45788766544 43 788888863
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-06 Score=94.64 Aligned_cols=276 Identities=9% Similarity=0.045 Sum_probs=153.4
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCeEEEEecCC-C-CCccccccceEEEEEEcCCeEEEEe------CCCCEEEEEeec
Q 046773 150 LTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQ-H-SDRLGQFSRAVSGIIITDSQLIFAT------LDGDIHVAVIDD 221 (453)
Q Consensus 150 lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh-~-~~~~~~~s~~V~~i~f~g~~LasgS------~D~tIkvWd~~~ 221 (453)
+++.+.+|+.++.|++|..+|++||+.+..+... . ...+...+. .+.. +.+++.++ .|+.|..+|..+
T Consensus 117 ~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~s---P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~t 192 (689)
T 1yiq_A 117 VAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGA---PRVV-NGKVVIGNGGAEFGVRGYVTAYDAET 192 (689)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSC---CEEE-TTEEEECCBCTTTCCBCEEEEEETTT
T ss_pred cEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCC---cEEE-CCEEEEEeCCCccCCCCEEEEEECCC
Confidence 4456778899999999999999999998877642 1 100111001 1223 34444443 367888888887
Q ss_pred CCcceEEeeec--c---------e------e---------cCc---eEEEEeCCCceeeEEEEeeCCC------------
Q 046773 222 VANETRTAHFG--S---------V------M---------DDG---VLIDFTGCSRYWVGLYAGLAGR------------ 260 (453)
Q Consensus 222 ~g~~~~~~~~~--~---------v------~---------~~~---~~v~Fs~dg~~~~~LaSgS~D~------------ 260 (453)
|...-+.... . + . ..+ ..++|+|++.. |+.++.++
T Consensus 193 -G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~---vy~~~~~g~~w~~~~~~~~~ 268 (689)
T 1yiq_A 193 -GKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNL---LYIGVGNGSLWDPKWRSQAK 268 (689)
T ss_dssp -CCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTE---EEEECCCEESSCHHHHHTTC
T ss_pred -CcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCE---EEEeCCCCCccccCCCCCCC
Confidence 6221111110 0 0 0 000 13688888764 66676665
Q ss_pred -------eEEEeeCCCCcEEecccccCCcceeeeeeeeeeccce--eEEEEcCC---ceEEEEcCCcEEEEECCCCceEE
Q 046773 261 -------AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFV--GRVRVTSH---ESAVACTSSRVITFDLRNQGMVL 328 (453)
Q Consensus 261 -------tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v--~~v~~s~~---~~~vas~d~tIrlWDl~t~~~~~ 328 (453)
+|..+|.+||+..--.....+. .|.. ..+.+. ..+.+.+. -+++++.++.+.++|.+||+.+-
T Consensus 269 gd~~y~~~v~AlD~~TG~~~W~~~~~~~d---~wd~--~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 343 (689)
T 1yiq_A 269 GDNLFLSSIVAVNADTGEYVWHYQTTPGD---AWDY--TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLS 343 (689)
T ss_dssp SCCTTTTEEEEEETTTCCEEEEEESSTTC---CSCC--CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCceeeeeEEEEEccCCceeEeeecCCcc---cccc--cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEec
Confidence 4999999999943100000000 0000 001111 11223332 13344556899999999998763
Q ss_pred EEee-ccCC---------eE-----------------------------EEEEEecCCEEEEEeCCC-------------
Q 046773 329 GERG-YGRG---------LY-----------------------------VTSVDVNAEAYIVVENRE------------- 356 (453)
Q Consensus 329 ~~~g-~~~~---------~~-----------------------------v~~~~~~g~~l~s~s~dg------------- 356 (453)
.... .... .. -.+++++...+++.+.+.
T Consensus 344 ~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 423 (689)
T 1yiq_A 344 AKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKR 423 (689)
T ss_dssp EEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCC
T ss_pred cccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccc
Confidence 3210 0000 00 035666666666553320
Q ss_pred -----cccc--------------------CcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEE
Q 046773 357 -----LENQ--------------------NRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWE 410 (453)
Q Consensus 357 -----~~~~--------------------~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD 410 (453)
..+. -+.+++.||..||+.+-.+..+... ........++.+..++. +.|+.||
T Consensus 424 ~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 424 NPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp CSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEEEECTTSEEEEEE
T ss_pred cccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-cCccceECCCEEEEECCCCcEEEEE
Confidence 0000 0247999999999988887665422 22244456777777665 9999999
Q ss_pred CCCCeEEEEecccCCce--EEEEecCCCEEE
Q 046773 411 VEGGEYMYSFRERIGEE--VIAFVGDDRHVA 439 (453)
Q Consensus 411 ~~tG~~l~tL~gh~~~~--V~a~s~d~~~la 439 (453)
.+||+.|..++...+.. -..+..||+..+
T Consensus 503 ~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 503 ADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 99999998886553330 124568888543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-06 Score=86.57 Aligned_cols=253 Identities=9% Similarity=-0.035 Sum_probs=150.0
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEe----------CCCCEEEEEeecCC--cceEEee
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFAT----------LDGDIHVAVIDDVA--NETRTAH 230 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS----------~D~tIkvWd~~~~g--~~~~~~~ 230 (453)
+++|-+.|..|++.+.++..... | . -.+++||+.|+.++ .+++|.+||..+ + +..+...
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~----P---~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t-~~v~~~I~v~ 128 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFL----P---N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT-LLPTADIELP 128 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSS----C---E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEET
T ss_pred CCEEEEEECCCCeEEEEEECCCC----C---c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CeEEEEEECC
Confidence 67999999999999988863221 2 1 12455677776654 367899999887 3 1222111
Q ss_pred ec-c--eecCceEEEEeCCCceeeEEEEee--CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE-EcC
Q 046773 231 FG-S--VMDDGVLIDFTGCSRYWVGLYAGL--AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR-VTS 304 (453)
Q Consensus 231 ~~-~--v~~~~~~v~Fs~dg~~~~~LaSgS--~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~-~s~ 304 (453)
.+ . +......++|+|||++ |+.+. .+++|.|+|+++++...- + .+.+. ..+. ...
T Consensus 129 ~g~r~~~g~~P~~~a~spDGk~---lyVan~~~~~~VsVID~~t~~vv~t--------I----~v~g~----~~~~P~g~ 189 (386)
T 3sjl_D 129 DAPRFLVGTYPWMTSLTPDGKT---LLFYQFSPAPAVGVVDLEGKAFKRM--------L----DVPDC----YHIFPTAP 189 (386)
T ss_dssp TCCCCCBSCCGGGEEECTTSSE---EEEEECSSSCEEEEEETTTTEEEEE--------E----ECCSE----EEEEEEET
T ss_pred CccccccCCCCceEEEcCCCCE---EEEEEcCCCCeEEEEECCCCcEEEE--------E----ECCCc----ceeecCCC
Confidence 00 0 0011123899999997 44444 378999999999984310 0 00110 0011 112
Q ss_pred CceEEEEcCCcEEEEECCC-CceEEEEe-e-ccCCeEE---EEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe--eE
Q 046773 305 HESAVACTSSRVITFDLRN-QGMVLGER-G-YGRGLYV---TSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE--EV 376 (453)
Q Consensus 305 ~~~~vas~d~tIrlWDl~t-~~~~~~~~-g-~~~~~~v---~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~--~v 376 (453)
+.++..|.|+++-+.|+.+ ++...+.. . ......+ ..|+....+++-.+.++ ++.+-|..++. .+
T Consensus 190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g-------~V~v~d~~~~~~~v~ 262 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG-------KIHQIDLSSGDAKFL 262 (386)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTS-------EEEEEECTTSSCEEC
T ss_pred ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCC-------EEEEEECCCCcceee
Confidence 3345668888888889876 44322111 0 0000111 13432233455577778 88888876543 22
Q ss_pred EEEE----------ecCCCeeEEEEeeCCCeEEEEe-----------CCeEEEEECCCCeEEEEecccCCceEE--EEec
Q 046773 377 CRFS----------LRADRNVNVMGCMNQGYALMCV-----------EGVIRVWEVEGGEYMYSFRERIGEEVI--AFVG 433 (453)
Q Consensus 377 ~~l~----------~~~~~v~~~~~~~~~~~lls~s-----------~~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~ 433 (453)
..+. ..+...+.+..+++++++.... +++|-+-|++|++.+.++.--. .++ +|++
T Consensus 263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~ 340 (386)
T 3sjl_D 263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQ 340 (386)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECS
T ss_pred cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECC
Confidence 2222 1244456677788887776542 1689999999999999885321 244 7889
Q ss_pred CCC-EEEEE--eCCcEEEEecC
Q 046773 434 DDR-HVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 434 d~~-~lasg--~D~~IklWDl~ 452 (453)
|++ +|.++ .+++|.++|..
T Consensus 341 D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 341 DEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp SSSCEEEEEETTTTEEEEEETT
T ss_pred CCCeEEEEEcCCCCeEEEEECC
Confidence 997 66554 68999999964
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-06 Score=82.04 Aligned_cols=207 Identities=9% Similarity=-0.012 Sum_probs=119.9
Q ss_pred eEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcc
Q 046773 204 QLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
.+++...+++|..||.++ +..........+ ..++|+|+|+++ .+. +..|.+||.++++...-......
T Consensus 27 l~~~d~~~~~i~~~d~~~-~~~~~~~~~~~~----~~i~~~~dG~l~----v~~-~~~l~~~d~~~g~~~~~~~~~~~-- 94 (297)
T 3g4e_A 27 LLFVDIPAKKVCRWDSFT-KQVQRVTMDAPV----SSVALRQSGGYV----ATI-GTKFCALNWKEQSAVVLATVDND-- 94 (297)
T ss_dssp EEEEETTTTEEEEEETTT-CCEEEEECSSCE----EEEEEBTTSSEE----EEE-TTEEEEEETTTTEEEEEEECCTT--
T ss_pred EEEEECCCCEEEEEECCC-CcEEEEeCCCce----EEEEECCCCCEE----EEE-CCeEEEEECCCCcEEEEEecCCC--
Confidence 445556678888888776 311111111111 248999999953 223 67899999998872110000000
Q ss_pred eeeeeeeeeeccceeEEEEcCCceEEEEc-----------CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEE-E
Q 046773 284 VMGWRMLTEFTEFVGRVRVTSHESAVACT-----------SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYI-V 351 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s~~~~~vas~-----------d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~-s 351 (453)
.....++.+++++++.+..++ ....+||-+...+.+...........-.+++++++.+. +
T Consensus 95 --------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 95 --------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp --------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred --------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEe
Confidence 001346788999877544432 13456776654333322211111122356777887654 4
Q ss_pred EeCCCccccCcceEEEEEc--CCCeeE--EEE-Ee--cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEeccc
Q 046773 352 VENRELENQNRRLAIVRRV--DTFEEV--CRF-SL--RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 352 ~s~dg~~~~~~~~i~Iw~~--~tg~~v--~~l-~~--~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh 423 (453)
.+.++ .|.+++. .+|+.. ..+ .+ .+.....+++.+++...++... +.|.+||.++|+.+.++..+
T Consensus 167 ~~~~~-------~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 167 DSLSY-------SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EGGGT-------EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred cCCCC-------cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 44455 7888876 455421 112 11 1233567777788876666665 88999999999999999877
Q ss_pred CCceEE--EEe-cCCCEE
Q 046773 424 IGEEVI--AFV-GDDRHV 438 (453)
Q Consensus 424 ~~~~V~--a~s-~d~~~l 438 (453)
... +. +|. ||+++|
T Consensus 240 ~~~-~t~~~f~g~d~~~L 256 (297)
T 3g4e_A 240 VDK-TTSCCFGGKNYSEM 256 (297)
T ss_dssp SSB-EEEEEEESGGGCEE
T ss_pred CCC-ceEEEEeCCCCCEE
Confidence 655 55 676 787765
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=103.41 Aligned_cols=189 Identities=10% Similarity=0.057 Sum_probs=103.9
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcc--eE
Q 046773 150 LTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANE--TR 227 (453)
Q Consensus 150 lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~--~~ 227 (453)
.+.++.+|++++.|++|..||+.||+++.++.. ... .+. .+..++..+++++.|++|+.||..+ |.. ..
T Consensus 5 P~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~---~s~---p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~ 75 (369)
T 2hz6_A 5 VTLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPV---LQV---PTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKL 75 (369)
T ss_dssp ---CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCS---CCC---C-----CCEEECTTTCCEEEC------CCSEEC
T ss_pred CeeeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCc---eec---ceEcCCCEEEEeCCCCEEEEEECCC-Cceeeee
Confidence 344678999999999999999999999988875 211 111 1223566777788999999999976 511 12
Q ss_pred EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc--CC
Q 046773 228 TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT--SH 305 (453)
Q Consensus 228 ~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s--~~ 305 (453)
..+....... ...+..++. |++|+.|++|..||.+||+.+ |. +..+. .+.++ .+
T Consensus 76 ~~~~~~~~~~--sp~~~~~~~----v~~g~~dg~v~a~D~~tG~~~-------------w~-~~~~~----~~~~~p~~~ 131 (369)
T 2hz6_A 76 PFTIPELVQA--SPCRSSDGI----LYMGKKQDIWYVIDLLTGEKQ-------------QT-LSSAF----ADSLSPSTS 131 (369)
T ss_dssp SCCHHHHHTT--CSCC---------CCCCEEEEEEEEECCC---------------------------------------
T ss_pred eccCcccccc--CceEecCCE----EEEEeCCCEEEEEECCCCcEE-------------EE-ecCCC----cccccccCC
Confidence 1221111100 001112332 567889999999999999843 11 11110 11222 33
Q ss_pred ceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC-----CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE
Q 046773 306 ESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA-----EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 306 ~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g-----~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~ 380 (453)
.+++++.+++|+.||+++|+.+....... .....+++ +.++.++.++ .+..||..+|+.+-.+.
T Consensus 132 ~v~~~~~dg~v~a~d~~tG~~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg-------~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 132 LLYLGRTEYTITMYDTKTRELRWNATYFD----YAASLPEDDVDYKMSHFVSNGDG-------LVVTVDSESGDVLWIQN 200 (369)
T ss_dssp -EEEEEEEEEEECCCSSSSSCCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSC-------EEEEECTTTCCEEEEEE
T ss_pred EEEEEecCCEEEEEECCCCCEEEeEeccc----ccCccccCCccccceEEEECCCC-------EEEEEECCCCcEEEEec
Confidence 45666778899999999997654432111 11222223 5677788888 99999999999887766
Q ss_pred ec
Q 046773 381 LR 382 (453)
Q Consensus 381 ~~ 382 (453)
..
T Consensus 201 ~~ 202 (369)
T 2hz6_A 201 YA 202 (369)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-05 Score=75.61 Aligned_cols=226 Identities=8% Similarity=-0.029 Sum_probs=131.2
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
.+.+|+++ |...++...++.|.+||.+. ....+...... .....++++++|+.| ++...++.|..||.+ ++
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~--~~~~~i~~~~~g~l~---v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLDG-KITEYPLPTPD--AKVMCLTISSDGEVW---FTENAANKIGRITKK-GI 88 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEECSSTT--CCEEEEEECTTSCEE---EEETTTTEEEEECTT-SC
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCCC-CeEEecCCccc--CceeeEEECCCCCEE---EeCCCCCeEEEECCC-Cc
Confidence 46678776 44455444478898888662 22222111000 112248899999863 344557889999986 44
Q ss_pred EEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEEc-CCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCE
Q 046773 272 VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVACT-SSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEA 348 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas~-d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~ 348 (453)
... ..+......+..+.+++++. .++.. ++.|.+||+ +++..... ........-.+++++++.
T Consensus 89 ~~~-------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l 154 (299)
T 2z2n_A 89 IKE-------------YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNAL 154 (299)
T ss_dssp EEE-------------EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred EEE-------------EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCE
Confidence 210 00111223567888987664 44443 468999999 55433221 112222333445566666
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCeeEEEEEe--cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEE-EecccC
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFEEVCRFSL--RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMY-SFRERI 424 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~--~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~-tL~gh~ 424 (453)
+++...++ .+.+++. +++.. .+.. .......+++.+++...++... +.|.+||. +++... .+..+.
T Consensus 155 ~v~~~~~~-------~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~ 224 (299)
T 2z2n_A 155 WFTENQNN-------AIGRITE-SGDIT-EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPN 224 (299)
T ss_dssp EEEETTTT-------EEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred EEEeCCCC-------EEEEEcC-CCcEE-EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCC
Confidence 66555556 7777777 55433 2222 2233567777777765555444 89999999 776543 233344
Q ss_pred CceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 425 GEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 425 ~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
.. +. ++.++|+..++. .++.|.+||.
T Consensus 225 ~~-~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 225 AR-PHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CC-EEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CC-ceeEEECCCCCEEEeccCCceEEEECC
Confidence 44 55 556888877777 7788988885
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.9e-09 Score=104.66 Aligned_cols=189 Identities=10% Similarity=0.020 Sum_probs=95.8
Q ss_pred EEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEeccc
Q 046773 198 IIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGD 277 (453)
Q Consensus 198 i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~ 277 (453)
.+.++.+|++++.|++|+.||..+ |....+...+.+. ...+.++++. +++++.|++|..||.++|+.+.-
T Consensus 5 P~v~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~~~~~----s~p~~~~g~~---~v~~s~dg~l~a~d~~tG~~~w~-- 74 (369)
T 2hz6_A 5 VTLPETLLFVSTLDGSLHAVSKRT-GSIKWTLKEDPVL----QVPTHVEEPA---FLPDPNDGSLYTLGSKNNEGLTK-- 74 (369)
T ss_dssp ---CTTEEEEEETTSEEEEEETTT-CCEEEEEECCCSC----CCC-----CC---EEECTTTCCEEEC-----CCSEE--
T ss_pred CeeeCCEEEEEcCCCEEEEEECCC-CCEEEEecCCCce----ecceEcCCCE---EEEeCCCCEEEEEECCCCceeee--
Confidence 345788999999999999999887 6221111112221 1223455553 56778999999999999873210
Q ss_pred ccCCcceeeeee-eee--eccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeC
Q 046773 278 LTDHNTVMGWRM-LTE--FTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVEN 354 (453)
Q Consensus 278 l~~~~~v~~w~~-l~~--h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~ 354 (453)
|.. ... ...++- ...+.+++++.+++|..||++||+++.+...+. ...+.++++.+++++.
T Consensus 75 ---------~~~~~~~~~~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~ 138 (369)
T 2hz6_A 75 ---------LPFTIPELVQASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT 138 (369)
T ss_dssp ---------CSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC--------------------------EEEEEE
T ss_pred ---------eeccCccccccCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec
Confidence 000 000 011111 022335566777899999999998765543221 1234567788888888
Q ss_pred CCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCC---CeEEEEeC-CeEEEEECCCCeEEEEec
Q 046773 355 RELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQ---GYALMCVE-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 355 dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~---~~lls~s~-~tIrlWD~~tG~~l~tL~ 421 (453)
++ .+..||..+|+.+..+.... ....+...+. +.++.++. +.|+.||.++|+.+.++.
T Consensus 139 dg-------~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 139 EY-------TITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EE-------EEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred CC-------EEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 88 99999999998766554322 1111112211 45555555 999999999999988765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.4e-06 Score=87.04 Aligned_cols=252 Identities=10% Similarity=-0.024 Sum_probs=147.1
Q ss_pred CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEe----------CCCCEEEEEeecCCcceEEeee
Q 046773 164 GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFAT----------LDGDIHVAVIDDVANETRTAHF 231 (453)
Q Consensus 164 ~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS----------~D~tIkvWd~~~~g~~~~~~~~ 231 (453)
++|-+.|+.|++.+.++.-... . .|++ |++.|+.+. .+++|.+.|..+ +....+...
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~--------P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t-~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFL--------P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT-FLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSS--------C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEE
T ss_pred CeEEEEECCCCEEEEEEECCCC--------C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-CcEEEEEEC
Confidence 7999999999999999863111 1 3554 566676655 367889998877 311111111
Q ss_pred c---ce--ecCceEEEEeCCCceeeEEEEeeC--CCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 232 G---SV--MDDGVLIDFTGCSRYWVGLYAGLA--GRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 232 ~---~v--~~~~~~v~Fs~dg~~~~~LaSgS~--D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
+ .+ ......++|+|||++ |+.+.. +++|.|.|+++++...- +. +.+ ...+...+
T Consensus 168 ~g~~r~~~g~~P~~~~~spDGk~---lyV~n~~~~~~VsVID~~t~kvv~~--I~----------v~g----~~~~~p~g 228 (426)
T 3c75_H 168 PDAPRFLVGTYQWMNALTPDNKN---LLFYQFSPAPAVGVVDLEGKTFDRM--LD----------VPD----CYHIFPAS 228 (426)
T ss_dssp TTCCCCCBSCCGGGSEECTTSSE---EEEEECSSSCEEEEEETTTTEEEEE--EE----------CCS----EEEEEEEE
T ss_pred CCccccccCCCcceEEEcCCCCE---EEEEecCCCCeEEEEECCCCeEEEE--EE----------cCC----ceeeccCC
Confidence 1 00 001123789999997 555553 68999999999984310 00 000 00111111
Q ss_pred -CceEEEEcCCcEEEEECCCCceEEEE-----eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee--E
Q 046773 305 -HESAVACTSSRVITFDLRNQGMVLGE-----RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE--V 376 (453)
Q Consensus 305 -~~~~vas~d~tIrlWDl~t~~~~~~~-----~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~--v 376 (453)
...+..+.|+++-+-|+.+++...+. .+...-.....+.+++.+++..+..+ ++.+-|...... +
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g-------~V~ViD~~~~~~~v~ 301 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTG-------KIFQADLTAEGATFR 301 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTS-------EEEEEEECSSCEEEC
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCC-------cEEEEeccCCceEEe
Confidence 22344466777777777555433111 00000000124677777777777666 777777654321 1
Q ss_pred EEEE----------ecCCCeeEEEEeeCCCeEEEEe-----------CCeEEEEECCCCeEEEEecccCCceEEEEecCC
Q 046773 377 CRFS----------LRADRNVNVMGCMNQGYALMCV-----------EGVIRVWEVEGGEYMYSFRERIGEEVIAFVGDD 435 (453)
Q Consensus 377 ~~l~----------~~~~~v~~~~~~~~~~~lls~s-----------~~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~ 435 (453)
..+. ..+...+.+.++++++++.... +++|-+.|++|++.+.++.......=-+|+||+
T Consensus 302 ~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg 381 (426)
T 3c75_H 302 APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDA 381 (426)
T ss_dssp CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSS
T ss_pred eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCC
Confidence 1111 1123334467888888766542 258999999999999988633222012788999
Q ss_pred C-EEEEE--eCCcEEEEecC
Q 046773 436 R-HVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 436 ~-~lasg--~D~~IklWDl~ 452 (453)
+ ++.++ .+++|-++|..
T Consensus 382 ~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 382 EPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp SCEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEcCCCCeEEEEECC
Confidence 9 88777 48999999974
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-05 Score=77.54 Aligned_cols=192 Identities=11% Similarity=0.095 Sum_probs=116.3
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEE
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFD 320 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWD 320 (453)
..++|+++. .+++...+++|..||.++++... ..+...+.++++++++.+..+.+..|.+||
T Consensus 18 p~w~~~~~~--l~~~d~~~~~i~~~d~~~~~~~~----------------~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d 79 (297)
T 3g4e_A 18 PVWEEVSNS--LLFVDIPAKKVCRWDSFTKQVQR----------------VTMDAPVSSVALRQSGGYVATIGTKFCALN 79 (297)
T ss_dssp EEEETTTTE--EEEEETTTTEEEEEETTTCCEEE----------------EECSSCEEEEEEBTTSSEEEEETTEEEEEE
T ss_pred CeEECCCCE--EEEEECCCCEEEEEECCCCcEEE----------------EeCCCceEEEEECCCCCEEEEECCeEEEEE
Confidence 567776543 25677788999999999887321 012356888999988766666677899999
Q ss_pred CCCCceEEEEee--ccCCeEEE--EEEecCCEEEEEeCCCcc--ccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeC
Q 046773 321 LRNQGMVLGERG--YGRGLYVT--SVDVNAEAYIVVENRELE--NQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMN 394 (453)
Q Consensus 321 l~t~~~~~~~~g--~~~~~~v~--~~~~~g~~l~s~s~dg~~--~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~ 394 (453)
+++++....... ......+. .++++|+.+++....... .......+||.++....+..+.........++++++
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 998754222111 11123333 456777766543322100 000124578877643223323222233467888899
Q ss_pred CCeEEEEeC--CeEEEEEC--CCCeE-----EEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 395 QGYALMCVE--GVIRVWEV--EGGEY-----MYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 395 ~~~lls~s~--~tIrlWD~--~tG~~-----l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
++.+..+.. +.|.+||+ ++|+. +..+..+.+. .. ++.++|++.++. .++.|.+||.
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~-p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI-PDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE-EEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC-CCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 887765544 89999987 56653 2333333333 44 567899877777 6788999986
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-06 Score=87.19 Aligned_cols=168 Identities=16% Similarity=0.117 Sum_probs=111.8
Q ss_pred EEEEEEc--CCeEEEEeCCCCEEEEEeecCC---------cce--EEeeecceecCceEEEEeCCCceeeEEEEeeCCCe
Q 046773 195 VSGIIIT--DSQLIFATLDGDIHVAVIDDVA---------NET--RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRA 261 (453)
Q Consensus 195 V~~i~f~--g~~LasgS~D~tIkvWd~~~~g---------~~~--~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~t 261 (453)
+..++++ ...+++|+.| .++||+.+... ..+ ...+.. + ..|+| |+.+ |+.+ .|+.
T Consensus 40 ~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V----~~l~f--d~~~---L~v~-~~~~ 107 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-V----IFVCF--HGDQ---VLVS-TRNA 107 (388)
T ss_dssp CBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-E----EEEEE--ETTE---EEEE-ESSE
T ss_pred ccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-e----eEEEE--CCCE---EEEE-cCCc
Confidence 3445554 4568888887 56779865411 111 111222 2 25899 7776 6777 8899
Q ss_pred EEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEE
Q 046773 262 FHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTS 341 (453)
Q Consensus 262 IrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~ 341 (453)
|++||+.+-... ..+..|...+..+++.+..+++++.|+++.+||+.++.... . . ..|.|
T Consensus 108 l~v~dv~sl~~~--------------~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-~---~--~~Vs~ 167 (388)
T 1xip_A 108 LYSLDLEELSEF--------------RTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-L---A--QNVTS 167 (388)
T ss_dssp EEEEESSSTTCE--------------EEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-E---E--ESEEE
T ss_pred EEEEEchhhhcc--------------CccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-c---c--CCceE
Confidence 999999875421 12334556677888776567777889999999999876532 1 1 23567
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCCee--EEEEE---------ecCCCeeEEEEeeCCCeEEEE
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE--VCRFS---------LRADRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~--v~~l~---------~~~~~v~~~~~~~~~~~lls~ 401 (453)
++.++++++++..|+ ++++|+.++++. ..++. .++..|.++.+.++..++++-
T Consensus 168 v~WSpkG~~vg~~dg-------~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 168 FDVTNSQLAVLLKDR-------SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEECSSEEEEEETTS-------CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEcCCceEEEEcCC-------cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 777777799999999 999999888775 45551 134447777777777776653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.6e-05 Score=83.65 Aligned_cols=284 Identities=8% Similarity=0.059 Sum_probs=157.5
Q ss_pred cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCcccc--ccce-EEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEe
Q 046773 153 SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQ--FSRA-VSGIIITDSQLIFATLDGDIHVAVIDDVANETRTA 229 (453)
Q Consensus 153 s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~--~s~~-V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~ 229 (453)
.+..|..++.++.|.-+|++||+.+.++.......... .... -+++++.+.+|+.++.|+.+..+|..+ |...-+.
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~t-G~~~W~~ 143 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKT-GKAIWSQ 143 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTT-CCEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCC-CCEeeee
Confidence 45667777889999999999999998886432110000 0000 123456678888999999999999887 6111111
Q ss_pred eec-----ceecCceEEEEeCCCceeeEEEEeeC------CCeEEEeeCCCCcEEecccc-c-CCcce------------
Q 046773 230 HFG-----SVMDDGVLIDFTGCSRYWVGLYAGLA------GRAFHIWDRQAEEVFVGGDL-T-DHNTV------------ 284 (453)
Q Consensus 230 ~~~-----~v~~~~~~v~Fs~dg~~~~~LaSgS~------D~tIrvWD~~tg~~~~g~~l-~-~~~~v------------ 284 (453)
... ......-.|. +++ ++.++. ++.|..+|.+||+.+--... . ++...
T Consensus 144 ~~~~~~~~~~~~~~P~v~---~~~----v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 216 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV---KGK----VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT 216 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE---TTE----EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred ccCCCCCcceecCCCEEE---CCE----EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence 110 0000000111 232 333332 58999999999994311000 0 00000
Q ss_pred ----eeeeeeeeeccceeEEEEcCC-c-eEEEEcCC-------------------cEEEEECCCCceEEEEe-e-cc---
Q 046773 285 ----MGWRMLTEFTEFVGRVRVTSH-E-SAVACTSS-------------------RVITFDLRNQGMVLGER-G-YG--- 334 (453)
Q Consensus 285 ----~~w~~l~~h~~~v~~v~~s~~-~-~~vas~d~-------------------tIrlWDl~t~~~~~~~~-g-~~--- 334 (453)
..|.. .+.......+.++++ + +++++.++ +|..+|++||+.+-... . |.
T Consensus 217 ~~g~~~w~~-~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd 295 (668)
T 1kv9_A 217 WQGDQYWKL-GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD 295 (668)
T ss_dssp CCSSCHHHH-CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred CCccceeee-CCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccc
Confidence 00100 011111234677653 2 34444333 49999999998765542 1 11
Q ss_pred ----CCeEEEEEEecCC---EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC-Cee-------------------
Q 046773 335 ----RGLYVTSVDVNAE---AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD-RNV------------------- 387 (453)
Q Consensus 335 ----~~~~v~~~~~~g~---~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~-~v~------------------- 387 (453)
.......+..+|+ .++.++.+| .+.+.|..||+.+....+.+. +..
T Consensus 296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G-------~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 368 (668)
T 1kv9_A 296 FTATQQITLAELNIDGKPRKVLMQAPKNG-------FFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEK 368 (668)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTS-------EEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSS
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEECCCC-------EEEEEECCCCCEeccccccccccccccccccCCccccccccccC
Confidence 1122233456665 467778888 999999999988755443320 000
Q ss_pred ----------------EEEEeeCCCeEEE-----------------------------------E-eC-CeEEEEECCCC
Q 046773 388 ----------------NVMGCMNQGYALM-----------------------------------C-VE-GVIRVWEVEGG 414 (453)
Q Consensus 388 ----------------~~~~~~~~~~lls-----------------------------------~-s~-~tIrlWD~~tG 414 (453)
.++++++.+.+.. . .. ++|..||+.||
T Consensus 369 ~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG 448 (668)
T 1kv9_A 369 EPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ 448 (668)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT
T ss_pred CeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC
Confidence 1233443333221 0 12 78999999999
Q ss_pred eEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 415 EYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 415 ~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+.+-..+.+....--.+...+..|..+ .|+.|+.||..
T Consensus 449 ~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 449 KAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence 998776543222011455667777778 89999999864
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.4e-06 Score=83.49 Aligned_cols=252 Identities=10% Similarity=-0.016 Sum_probs=132.4
Q ss_pred EEEEEecC--CEEEEEe--CCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC-CeEEEEe-C-----CCCEE
Q 046773 147 CRCLTLSD--LYLACGF--ADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD-SQLIFAT-L-----DGDIH 215 (453)
Q Consensus 147 v~~lafs~--~~LaSGS--~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g-~~LasgS-~-----D~tIk 215 (453)
...+++++ +++++.. .++.++||.+.+|+ +..+....... ......+.+|++++ ..|.... . +..|.
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~-~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNA-IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSC-CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCc-ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 67888874 6778764 23447788877775 34442110000 00113577899974 3343333 2 57888
Q ss_pred EEEeecCC--cceEEeeeccee--cCceEEEEeCCCceeeEEEEee---CCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 216 VAVIDDVA--NETRTAHFGSVM--DDGVLIDFTGCSRYWVGLYAGL---AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 216 vWd~~~~g--~~~~~~~~~~v~--~~~~~v~Fs~dg~~~~~LaSgS---~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
+||..+ | +.++........ .....|+|+|++.. .+++.+ .+++|.+||.++++...
T Consensus 97 ~~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~--~yvtd~~~~~~~~i~v~d~~~g~~~r-------------- 159 (343)
T 2qe8_A 97 AWDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNF--VYISDPAPDDKAALIRVDLQTGLAAR-------------- 159 (343)
T ss_dssp EEETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTE--EEEEECCSGGGCEEEEEETTTCCEEE--------------
T ss_pred EEECCC-CeEEEEEECChhhcccccccceEEEecCCCE--EEEEcCccCCCCeEEEEECCCCCEEE--------------
Confidence 999876 4 222222111000 00124889986543 245555 68899999999887321
Q ss_pred eeeeeccce---eEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 289 MLTEFTEFV---GRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 289 ~l~~h~~~v---~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
.+.+|.... ..+.+.+..+.+.+.+++++.|... ..-.+++++++.+..++.++ .
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~--------------~~gia~s~dg~~ly~~~~~~-------~- 217 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG--------------VNGIVLDAENEWLYLSPMHS-------T- 217 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCC--------------EEEEEECTTSCEEEEEESSC-------S-
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceeceecc--------------cceeEeccCCCEEEEEeCCC-------C-
Confidence 111221100 1111222222333455666666421 11156778887777766555 2
Q ss_pred EEEEcCCC-----e--------eEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEeccc-CCceEE-
Q 046773 366 IVRRVDTF-----E--------EVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRER-IGEEVI- 429 (453)
Q Consensus 366 ~Iw~~~tg-----~--------~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh-~~~~V~- 429 (453)
+||.+++. . .+..+ .+......+++++++...++... +.|.+||.++|+........ ... ..
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~-p~~ 295 (343)
T 2qe8_A 218 SMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSW-TDS 295 (343)
T ss_dssp EEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSC-EEE
T ss_pred eEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceec-CCe
Confidence 56655421 0 01111 11112345677777765555555 89999999778753333222 233 44
Q ss_pred -EEecCCCEEEEE
Q 046773 430 -AFVGDDRHVAAS 441 (453)
Q Consensus 430 -a~s~d~~~lasg 441 (453)
+|.+|++.+++.
T Consensus 296 va~~~~g~l~v~~ 308 (343)
T 2qe8_A 296 FNFGSDGYLYFDC 308 (343)
T ss_dssp EEECTTSCEEEEE
T ss_pred eEECCCCcEEEEe
Confidence 667888877665
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.2e-06 Score=84.61 Aligned_cols=175 Identities=11% Similarity=0.091 Sum_probs=114.6
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE-EecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV-FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVIT 318 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~-~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrl 318 (453)
+++++++... |++|+.| .++||++++-+. +.. ....... ..+..+.. |.+|+|+. ..++.+.++.|++
T Consensus 42 lLais~~~gl---l~a~~~~-~l~v~~~~~l~~~~~~----~~~~~~~-~~~~~lp~-V~~l~fd~-~~L~v~~~~~l~v 110 (388)
T 1xip_A 42 NLDISNSKSL---FVAASGS-KAVVGELQLLRDHITS----DSTPLTF-KWEKEIPD-VIFVCFHG-DQVLVSTRNALYS 110 (388)
T ss_dssp CEEEETTTTE---EEEEETT-EEEEEEHHHHHHHHHS----SSCCCCC-SEEEECTT-EEEEEEET-TEEEEEESSEEEE
T ss_pred EEEEcCCCCE---EEEeCCC-EEEEEEhhHhhhhhcc----ccccccc-eEEeeCCC-eeEEEECC-CEEEEEcCCcEEE
Confidence 5889998875 7788887 577799765430 000 0000000 01234556 99999943 3444447789999
Q ss_pred EECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeE
Q 046773 319 FDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYA 398 (453)
Q Consensus 319 WDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~l 398 (453)
||+++.........+ ...+.++.+.+..+++++.|| ++.+|++.+++... + ...|+++.+++.| ..
T Consensus 111 ~dv~sl~~~~~~~~~--~~~v~~i~~~~p~~av~~~dG-------~L~v~dl~~~~~~~-~---~~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 111 LDLEELSEFRTVTSF--EKPVFQLKNVNNTLVILNSVN-------DLSALDLRTKSTKQ-L---AQNVTSFDVTNSQ-LA 176 (388)
T ss_dssp EESSSTTCEEEEEEC--SSCEEEEEECSSEEEEEETTS-------EEEEEETTTCCEEE-E---EESEEEEEECSSE-EE
T ss_pred EEchhhhccCcccee--ecceeeEEecCCCEEEEECCC-------CEEEEEccCCcccc-c---cCCceEEEEcCCc-eE
Confidence 999876543333223 233556666665689999999 99999999887643 2 2358899999888 33
Q ss_pred EEEeCCeEEEEECCCCeE--EEEe------c---ccCCceEEE--EecCCCEEEE
Q 046773 399 LMCVEGVIRVWEVEGGEY--MYSF------R---ERIGEEVIA--FVGDDRHVAA 440 (453)
Q Consensus 399 ls~s~~tIrlWD~~tG~~--l~tL------~---gh~~~~V~a--~s~d~~~las 440 (453)
+.+.+++|++|+..++++ ..++ . +|... |.+ +.+++.++++
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~-V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS-PLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE-EEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCee-EEEEEEecCCeEEEE
Confidence 333449999999998887 7777 2 35555 664 4578888876
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.6e-05 Score=75.56 Aligned_cols=188 Identities=9% Similarity=-0.000 Sum_probs=112.5
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEE
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFD 320 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWD 320 (453)
.+|+|+++. .++++..++.|.+||.++++... + .+...+.++.+++++.+..+....|.+||
T Consensus 54 p~~~~~~~~--l~~~d~~~~~i~~~d~~~~~~~~---------------~-~~~~~v~~i~~~~dg~l~v~~~~gl~~~d 115 (326)
T 2ghs_A 54 PTFDPASGT--AWWFNILERELHELHLASGRKTV---------------H-ALPFMGSALAKISDSKQLIASDDGLFLRD 115 (326)
T ss_dssp EEEETTTTE--EEEEEGGGTEEEEEETTTTEEEE---------------E-ECSSCEEEEEEEETTEEEEEETTEEEEEE
T ss_pred CeEeCCCCE--EEEEECCCCEEEEEECCCCcEEE---------------E-ECCCcceEEEEeCCCeEEEEECCCEEEEE
Confidence 678898654 35677788999999999887321 0 11245778888877754444455699999
Q ss_pred CCCCceEEEEee-c-cCCeEEEE--EEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCC
Q 046773 321 LRNQGMVLGERG-Y-GRGLYVTS--VDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQG 396 (453)
Q Consensus 321 l~t~~~~~~~~g-~-~~~~~v~~--~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~ 396 (453)
+++++....... . .....+.. ++++|+.+++..... .......||.+++++. ..+.........++++++++
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~---~~~~~~~l~~~~~g~~-~~~~~~~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK---AETGAGSIYHVAKGKV-TKLFADISIPNSICFSPDGT 191 (326)
T ss_dssp TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT---CCTTCEEEEEEETTEE-EEEEEEESSEEEEEECTTSC
T ss_pred CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc---CCCCceEEEEEeCCcE-EEeeCCCcccCCeEEcCCCC
Confidence 998764322111 1 11233444 566676655433211 0011456666655543 33322223356778888888
Q ss_pred eEEEEeC--CeEEEEECC--CC-e-----EEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 397 YALMCVE--GVIRVWEVE--GG-E-----YMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 397 ~lls~s~--~tIrlWD~~--tG-~-----~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
.+..+.. +.|.+||+. +| + .+..+.+..+. .. ++.++|++.++. .++.|.+||.
T Consensus 192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~-p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGG-MDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSE-EEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCC-CCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 7765543 899999986 67 3 23334333333 44 456788877766 6788988875
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00024 Score=71.53 Aligned_cols=250 Identities=12% Similarity=0.062 Sum_probs=139.5
Q ss_pred EEEecC--CEEEEEe----------CCCcEEEEECCCCeEEEEecCC-CCC-ccccccceEEEEEEcCCeEEEEeC--CC
Q 046773 149 CLTLSD--LYLACGF----------ADGAVRLFDLTTRLHVRTFRPQ-HSD-RLGQFSRAVSGIIITDSQLIFATL--DG 212 (453)
Q Consensus 149 ~lafs~--~~LaSGS----------~D~TIrlWD~~tg~~~~tl~gh-~~~-~~~~~s~~V~~i~f~g~~LasgS~--D~ 212 (453)
.++||+ ++|..+. .|++|-++|+.|++.+.++.-. ... ..+.....+ .+.+||+.|+.++. +.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~-~~spDG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMN-ANTPNNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccce-EECCCCCEEEEEecCCCC
Confidence 355554 5555553 4789999999999988776421 000 000000111 24456888888764 47
Q ss_pred CEEEEEeecCCcceEE-eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 213 DIHVAVIDDVANETRT-AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 213 tIkvWd~~~~g~~~~~-~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
+|.|.| .+ +....+ .... + .+.+.|+++. .+++.+.|+++.++|. +++...-... .+ ...
T Consensus 149 ~v~viD-~t-~~~~~~~i~~~-----~-~~~~~~~~~~--~~~~~~~dg~~~~vd~-~g~~~~~~~~-~~-------~~~ 209 (373)
T 2mad_H 149 AVGLVV-QG-GSSDDQLLSSP-----T-CYHIHPGAPS--TFYLLCAQGGLAKTDH-AGGAAGAGLV-GA-------MLT 209 (373)
T ss_pred eEEEEE-CC-CCEEeEEcCCC-----c-eEEEEeCCCc--eEEEEcCCCCEEEEEC-CCcEEEEEec-cc-------ccc
Confidence 799999 77 411111 1111 1 2456677654 2456678999999999 8773310000 00 000
Q ss_pred eeccce-eEEEEc--CCceEEEEcCCcEEEEECCCCceE--EEEe---------e-ccCCeEEEEEEecCCEEEEEeCCC
Q 046773 292 EFTEFV-GRVRVT--SHESAVACTSSRVITFDLRNQGMV--LGER---------G-YGRGLYVTSVDVNAEAYIVVENRE 356 (453)
Q Consensus 292 ~h~~~v-~~v~~s--~~~~~vas~d~tIrlWDl~t~~~~--~~~~---------g-~~~~~~v~~~~~~g~~l~s~s~dg 356 (453)
+ ..++ ....+. ++..+..+..+.|.+.|+.++... .+.. + .........++++++++..+...+
T Consensus 210 ~-~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 210 A-AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred C-CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence 0 0111 111222 223444455567888888654211 1110 0 011122356788888776654322
Q ss_pred ccc---cCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCC-eEEEEe-C-CeEEEEECCCCeEEEEe
Q 046773 357 LEN---QNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQG-YALMCV-E-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 357 ~~~---~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~-~lls~s-~-~tIrlWD~~tG~~l~tL 420 (453)
.+. ...+++.|.|..+++.+.++.... ....+.+++|++ .++++. . ++|.++|+++++.+.++
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 100 012378888999998888886432 356889999999 566665 3 99999999999998874
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.4e-06 Score=83.36 Aligned_cols=251 Identities=8% Similarity=-0.101 Sum_probs=141.7
Q ss_pred EEEEEeCCC----cEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEe----------CCCCEEEEEe
Q 046773 156 YLACGFADG----AVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFAT----------LDGDIHVAVI 219 (453)
Q Consensus 156 ~LaSGS~D~----TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS----------~D~tIkvWd~ 219 (453)
..++-..++ +|-+.|..|++.+.++..... . .++| |++.|+.+. .|++|.++|.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~--------P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~ 103 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL--------S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP 103 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT--------C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCC--------C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 455555555 888999999999999863221 1 2555 577777765 3788999998
Q ss_pred ecCC--cceEEee-ecc--eecCceEEEEeCCCceeeEEEEeeC--CCeEEE--eeCCCCcEEecccccCCcceeeeeee
Q 046773 220 DDVA--NETRTAH-FGS--VMDDGVLIDFTGCSRYWVGLYAGLA--GRAFHI--WDRQAEEVFVGGDLTDHNTVMGWRML 290 (453)
Q Consensus 220 ~~~g--~~~~~~~-~~~--v~~~~~~v~Fs~dg~~~~~LaSgS~--D~tIrv--WD~~tg~~~~g~~l~~~~~v~~w~~l 290 (453)
.+ + +.++... ... ...+...++|+|||++ |+.+.. +.+|.| +|+++-..+. + +
T Consensus 104 ~T-~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~---lyVan~~~~~~v~V~~iD~~tv~~i~---v--~--------- 165 (368)
T 1mda_H 104 VT-FLPIADIELPDAPRFSVGPRVHIIGNCASSAC---LLFFLFGSSAAAGLSVPGASDDQLTK---S--A--------- 165 (368)
T ss_dssp TT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSC---EEEEECSSSCEEEEEETTTEEEEEEE---C--S---------
T ss_pred CC-CCEEEEEECCCccccccCCCcceEEEcCCCCE---EEEEccCCCCeEEEEEEchhhceEEE---C--C---------
Confidence 87 4 2222221 000 0011224899999998 555543 467888 9998711111 0 0
Q ss_pred eeeccceeEEEEcCCce-EEEEcCCcEEEEECCC-----CceEEE----E-eeccCCeEEEEEEecCCEEEEEeCCCccc
Q 046773 291 TEFTEFVGRVRVTSHES-AVACTSSRVITFDLRN-----QGMVLG----E-RGYGRGLYVTSVDVNAEAYIVVENRELEN 359 (453)
Q Consensus 291 ~~h~~~v~~v~~s~~~~-~vas~d~tIrlWDl~t-----~~~~~~----~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~ 359 (453)
+ +..+..+++.. ++.|.|+++-+-|+++ ++...+ . .+. ... . .+++..++.++. +
T Consensus 166 -~----~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~---~P~-~-~~~~~~~~~vs~-~--- 231 (368)
T 1mda_H 166 -S----CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS---QAA-Q-ANYPGMLVWAVA-S--- 231 (368)
T ss_dssp -S----CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS---CCE-E-ETTTTEEEECBS-S---
T ss_pred -C----ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCC---Ccc-c-cccCCEEEEEcC-C---
Confidence 0 00011122222 3335566666677776 221100 0 111 111 2 556666666666 6
Q ss_pred cCcceEEEEEcCCCe--eEEEEEe----------cCCCeeEEEEeeCCCeEEEE-e---------CCeEEEEECCCCeEE
Q 046773 360 QNRRLAIVRRVDTFE--EVCRFSL----------RADRNVNVMGCMNQGYALMC-V---------EGVIRVWEVEGGEYM 417 (453)
Q Consensus 360 ~~~~~i~Iw~~~tg~--~v~~l~~----------~~~~v~~~~~~~~~~~lls~-s---------~~tIrlWD~~tG~~l 417 (453)
++.+-|..+.+ .+..+.+ .|...+.+.++++++++..+ . ++.+.++|++|++.+
T Consensus 232 ----~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv 307 (368)
T 1mda_H 232 ----SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS 307 (368)
T ss_dssp ----CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE
T ss_pred ----EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE
Confidence 66666665432 1111111 12222336788888877643 2 224559999999999
Q ss_pred EEecccCCceEEEEecCCCE-EEEE--eCCcEEEEecC
Q 046773 418 YSFRERIGEEVIAFVGDDRH-VAAS--CGTNIHLWDFG 452 (453)
Q Consensus 418 ~tL~gh~~~~V~a~s~d~~~-lasg--~D~~IklWDl~ 452 (453)
.+++......=.+|+||+++ +++. .+++|.++|+.
T Consensus 308 ~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 308 GPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp ECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred EEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 98864432211278899985 4444 38999999975
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.0001 Score=71.11 Aligned_cols=221 Identities=7% Similarity=-0.088 Sum_probs=123.4
Q ss_pred EEEEE--cCC-eEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE
Q 046773 196 SGIII--TDS-QLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV 272 (453)
Q Consensus 196 ~~i~f--~g~-~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~ 272 (453)
.+.++ +++ .++++..++.|..|+.+. ....+..+...+ ..++|+++|+. +++...++.|.+||.. |+.
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~~~~~~~~~~~----~gl~~d~dG~l---~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWREDG-TVDVLLDATAFT----NGNAVDAQQRL---VHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEETTS-CEEEEEESCSCE----EEEEECTTSCE---EEEETTTTEEEEECTT-SCE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeCCC-CEEEEeCCCCcc----ceeeECCCCCE---EEEECCCCEEEEECCC-CCE
Confidence 44555 455 466677788898888632 233333322221 24899999985 3343455789999986 652
Q ss_pred --EecccccCCcceeeeeeeeee-ccceeEEEEcCCceEEEEc-------------------CCcEEEEECCCCceEEEE
Q 046773 273 --FVGGDLTDHNTVMGWRMLTEF-TEFVGRVRVTSHESAVACT-------------------SSRVITFDLRNQGMVLGE 330 (453)
Q Consensus 273 --~~g~~l~~~~~v~~w~~l~~h-~~~v~~v~~s~~~~~vas~-------------------d~tIrlWDl~t~~~~~~~ 330 (453)
+.. ...+. ...++.+.+++++.+..++ .+.|..+|.++++.....
T Consensus 119 ~~~~~-------------~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 119 HLLVG-------------RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp EEEEC-------------EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred EEEEe-------------ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 210 00011 1345678899887655532 135777888776543222
Q ss_pred eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEE---EEE-ecCCCeeEEEEeeCCCeEEEEeCCeE
Q 046773 331 RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC---RFS-LRADRNVNVMGCMNQGYALMCVEGVI 406 (453)
Q Consensus 331 ~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~---~l~-~~~~~v~~~~~~~~~~~lls~s~~tI 406 (453)
+ .....-.+|+++++.+..+...... .....|.+++++.+. +. .+. ........+...+++...+ +..+.|
T Consensus 186 -~-~~~p~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~gv 260 (305)
T 3dr2_A 186 -D-LDHPNGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTGV 260 (305)
T ss_dssp -E-ESSEEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSEE
T ss_pred -c-CCCCcceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCcE
Confidence 1 1122235778888877666544100 001177888877543 21 111 1111223456666766443 334559
Q ss_pred EEEECCCCeEEEEecccCCceEE-EEecCCCEEEEE-eCCc
Q 046773 407 RVWEVEGGEYMYSFRERIGEEVI-AFVGDDRHVAAS-CGTN 445 (453)
Q Consensus 407 rlWD~~tG~~l~tL~gh~~~~V~-a~s~d~~~lasg-~D~~ 445 (453)
.+||. +|+.+..+..+... .. +|++|++.|..+ .++.
T Consensus 261 ~~~~~-~g~~~~~~~~~~~~-~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 261 CVFDS-DGQLLGHIPTPGTA-SNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EEECT-TSCEEEEEECSSCC-CEEEECTTSCEEEEEETTEE
T ss_pred EEECC-CCCEEEEEECCCce-eEEEEeCCCCEEEEEcCCeE
Confidence 99998 58888777655432 22 677899887666 5533
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=8.7e-05 Score=72.76 Aligned_cols=207 Identities=9% Similarity=-0.016 Sum_probs=115.6
Q ss_pred eEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCc
Q 046773 204 QLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHN 282 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~ 282 (453)
.+++...++.|.+||.++ + ...+. ....+ ..++|+|+|+++ ++ + +..|.+||.++++...-......
T Consensus 63 l~~~d~~~~~i~~~d~~~-~~~~~~~-~~~~v----~~i~~~~dg~l~---v~-~-~~gl~~~d~~~g~~~~~~~~~~~- 130 (326)
T 2ghs_A 63 AWWFNILERELHELHLAS-GRKTVHA-LPFMG----SALAKISDSKQL---IA-S-DDGLFLRDTATGVLTLHAELESD- 130 (326)
T ss_dssp EEEEEGGGTEEEEEETTT-TEEEEEE-CSSCE----EEEEEEETTEEE---EE-E-TTEEEEEETTTCCEEEEECSSTT-
T ss_pred EEEEECCCCEEEEEECCC-CcEEEEE-CCCcc----eEEEEeCCCeEE---EE-E-CCCEEEEECCCCcEEEEeeCCCC-
Confidence 455566678888888776 4 11111 11111 247899999863 22 3 34599999998873110000000
Q ss_pred ceeeeeeeeeeccceeEEEEcCCceEE-EEcC-----CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEE-eCC
Q 046773 283 TVMGWRMLTEFTEFVGRVRVTSHESAV-ACTS-----SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVV-ENR 355 (453)
Q Consensus 283 ~v~~w~~l~~h~~~v~~v~~s~~~~~v-as~d-----~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~-s~d 355 (453)
.....++.+.+++++.+. ++.+ ...+||.+.+++ +...........-.+++++++.+..+ +.+
T Consensus 131 ---------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 131 ---------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp ---------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred ---------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 001347788999887543 3321 234555444443 22221111122335677788766444 444
Q ss_pred CccccCcceEEEEEcC--CC-ee--EEEE-Ee--cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCc
Q 046773 356 ELENQNRRLAIVRRVD--TF-EE--VCRF-SL--RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 356 g~~~~~~~~i~Iw~~~--tg-~~--v~~l-~~--~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
+ .|.+++.+ ++ +. ...+ .+ .......+...+++...++... +.|.+||. +|+.+..+..+...
T Consensus 201 ~-------~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~ 272 (326)
T 2ghs_A 201 N-------RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQ 272 (326)
T ss_dssp C-------EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSB
T ss_pred C-------EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCC
Confidence 5 78888876 56 31 1122 11 1222455666677766666555 88999998 68888887766655
Q ss_pred eEE--EEe-cCCCEE-EEE
Q 046773 427 EVI--AFV-GDDRHV-AAS 441 (453)
Q Consensus 427 ~V~--a~s-~d~~~l-asg 441 (453)
+. +|+ +|++.| ++.
T Consensus 273 -~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 273 -TTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp -EEEEEEESTTSCEEEEEE
T ss_pred -cEEEEEecCCCCEEEEEe
Confidence 65 566 787766 444
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00042 Score=65.15 Aligned_cols=226 Identities=7% Similarity=-0.082 Sum_probs=128.9
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
...+|+++ |...++...++.|.++|.+. ....+..... ......++++++|+.+ ++...++.|.++|.. ++
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~~~~~~~~--~~~~~~i~~~~~g~l~---v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQSG-RIKEFEVPTP--DAKVMCLIVSSLGDIW---FTENGANKIGKLSKK-GG 93 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEECSST--TCCEEEEEECTTSCEE---EEETTTTEEEEECTT-SC
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCCC-ceEEEECCCC--CCcceeEEECCCCCEE---EEecCCCeEEEECCC-CC
Confidence 34567775 45555555678888888652 1111111100 0112247889999853 344557889999987 65
Q ss_pred EEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEEEc-CCcEEEEECCCCceEEE-EeeccCCeEEEEEEecCCE
Q 046773 272 VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVACT-SSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEA 348 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~vas~-d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~ 348 (453)
... ..+......+..+++++++ +.++.. ++.|..+|.+ ++.... .........-.+++++++.
T Consensus 94 ~~~-------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l 159 (300)
T 2qc5_A 94 FTE-------------YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL 159 (300)
T ss_dssp EEE-------------EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred eEE-------------ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE
Confidence 211 0011112446778888765 445544 4689999998 554322 1111222233445666775
Q ss_pred EEEEeCCCccccCcceEEEEEcCCCeeEEEEEe--cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEE-EecccC
Q 046773 349 YIVVENRELENQNRRLAIVRRVDTFEEVCRFSL--RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMY-SFRERI 424 (453)
Q Consensus 349 l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~--~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~-tL~gh~ 424 (453)
+++...++ .+.+++. +++.. .+.. .......+++.+++...++... +.|.++|. +|+... .+..+.
T Consensus 160 ~v~~~~~~-------~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~ 229 (300)
T 2qc5_A 160 WFTENQNN-------SIGRITN-TGKLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPN 229 (300)
T ss_dssp EEEETTTT-------EEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred EEEecCCC-------eEEEECC-CCcEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCC
Confidence 55544455 6777776 44433 2332 1233566777777655555444 78999999 665543 344344
Q ss_pred CceEE--EEecCCCEEEEE-eCCcEEEEec
Q 046773 425 GEEVI--AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 425 ~~~V~--a~s~d~~~lasg-~D~~IklWDl 451 (453)
.. +. ++.++++..++. .++.|..+|.
T Consensus 230 ~~-~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 230 AR-PHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp CC-EEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CC-ceEEEECCCCCEEEeccCCCeEEEECC
Confidence 44 55 556888877777 6788888874
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=98.37 E-value=4.5e-08 Score=70.89 Aligned_cols=47 Identities=19% Similarity=0.399 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHh
Q 046773 43 EPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRL 93 (453)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~ 93 (453)
.+.++.||.|+..+|+.||+ .++|+.+++||++|+.++.++.+|+++
T Consensus 6 ~~~~~~LP~eil~~I~~~L~----~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLC----LPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSC----GGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCCHHHCCHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 34457899999999999987 679999999999999999999999754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00015 Score=73.76 Aligned_cols=241 Identities=10% Similarity=0.112 Sum_probs=130.3
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCC--ccccccceEEEEEEcCCeEEEEeC--CCCEEEEEeecCC--cceEEeeeccee
Q 046773 162 ADGAVRLFDLTTRLHVRTFRPQHSD--RLGQFSRAVSGIIITDSQLIFATL--DGDIHVAVIDDVA--NETRTAHFGSVM 235 (453)
Q Consensus 162 ~D~TIrlWD~~tg~~~~tl~gh~~~--~~~~~s~~V~~i~f~g~~LasgS~--D~tIkvWd~~~~g--~~~~~~~~~~v~ 235 (453)
.+++|.+||+.|++.+.++.-..+. ..+.....+ ++..||+.|..+.. +++|-|.|+.+ + +.++.. .
T Consensus 107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~-a~spDGk~lyVan~~~~~~VsVID~~t-~~vv~tI~v--~--- 179 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMT-SLTPDGKTLLFYQFSPAPAVGVVDLEG-KAFKRMLDV--P--- 179 (386)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGE-EECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEEC--C---
T ss_pred CCCEEEEEECCCCeEEEEEECCCccccccCCCCceE-EEcCCCCEEEEEEcCCCCeEEEEECCC-CcEEEEEEC--C---
Confidence 4789999999999999887421100 000001111 24456888776653 68899999887 3 122211 0
Q ss_pred cCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC-CcEEecc-cccCCcceeeeeeeeeeccce-eEEEEc-CCc-eEEE
Q 046773 236 DDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA-EEVFVGG-DLTDHNTVMGWRMLTEFTEFV-GRVRVT-SHE-SAVA 310 (453)
Q Consensus 236 ~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t-g~~~~g~-~l~~~~~v~~w~~l~~h~~~v-~~v~~s-~~~-~~va 310 (453)
++...+ |.|.. .+++.+.|+++-+.++.+ ++..... ...++. ..++ +...|. +++ ++..
T Consensus 180 --g~~~~~-P~g~~--~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~-----------~~~~~~~~~~~~~dG~~~~v 243 (386)
T 3sjl_D 180 --DCYHIF-PTAPD--TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE-----------DEFLINHPAYSQKAGRLVWP 243 (386)
T ss_dssp --SEEEEE-EEETT--EEEEEETTSCEEEEECCSSSCCEEEECCCCSCT-----------TSCBCSCCEEETTTTEEEEE
T ss_pred --Ccceee-cCCCc--eeEEECCCCCEEEEECCCCCeEEEeecceeccc-----------cccccccceeEcCCCcEEEE
Confidence 000111 22111 133455566666666654 4421100 000000 0111 112342 455 4456
Q ss_pred EcCCcEEEEECCCCce-E-EEEe---------e-ccCCeEEEEEEecCCEEEEEeCC-CccccC--cceEEEEEcCCCee
Q 046773 311 CTSSRVITFDLRNQGM-V-LGER---------G-YGRGLYVTSVDVNAEAYIVVENR-ELENQN--RRLAIVRRVDTFEE 375 (453)
Q Consensus 311 s~d~tIrlWDl~t~~~-~-~~~~---------g-~~~~~~v~~~~~~g~~l~s~s~d-g~~~~~--~~~i~Iw~~~tg~~ 375 (453)
+.+++|.+.|+.++.. + .+.. + ........+++++++++..+..+ ++..+. .+.|-+-|..|++.
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 6678999999976542 1 1111 0 00011235678888887665431 111111 23566778888988
Q ss_pred EEEEEecCCCeeEEEEeeCCC-eEEEEeC--CeEEEEECCCCeEEEEec--ccCCc
Q 046773 376 VCRFSLRADRNVNVMGCMNQG-YALMCVE--GVIRVWEVEGGEYMYSFR--ERIGE 426 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~-~lls~s~--~tIrlWD~~tG~~l~tL~--gh~~~ 426 (453)
+..+.... ...++.+++|++ +++++.. ++|.+.|+++++.+.++. +|...
T Consensus 324 ~~~i~vg~-~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~ 378 (386)
T 3sjl_D 324 LAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 378 (386)
T ss_dssp EEEEEEEE-EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCC
T ss_pred EEEEECCC-CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCce
Confidence 88876532 356889999987 5555543 999999999999999885 44444
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00032 Score=67.71 Aligned_cols=184 Identities=8% Similarity=0.031 Sum_probs=117.4
Q ss_pred EEEeCCCceeeEEEEee-CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc-CCcEEE
Q 046773 241 IDFTGCSRYWVGLYAGL-AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT-SSRVIT 318 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~-d~tIrl 318 (453)
++|+|||+.+ ..+|. .+++|++.|++|++...-.. +..+ ...-.+.++++.+.++.. +++|-+
T Consensus 26 l~~~~dg~Ly--vstg~~~~s~v~~iD~~tg~v~~~i~------------l~~~-~fgeGi~~~g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 26 LVYAENDTLF--ESTGLYGRSSVRQVALQTGKVENIHK------------MDDS-YFGEGLTLLNEKLYQVVWLKNIGFI 90 (266)
T ss_dssp EEECSTTEEE--EEECSTTTCEEEEEETTTCCEEEEEE------------CCTT-CCEEEEEEETTEEEEEETTCSEEEE
T ss_pred EEEeCCCeEE--EECCCCCCCEEEEEECCCCCEEEEEe------------cCCC-cceEEEEEeCCEEEEEEecCCEEEE
Confidence 7899987531 22231 36899999999999542100 1111 112246667777777775 478999
Q ss_pred EECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC-----CeeEEEEe
Q 046773 319 FDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD-----RNVNVMGC 392 (453)
Q Consensus 319 WDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~-----~v~~~~~~ 392 (453)
+|++|.+.+.+. .+...+ ..++++|+.++.+..++ ++.+.|.++.+.+..+..... ....+.+.
T Consensus 91 iD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~-------~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTS-------ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp EETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSS-------EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCC-------eEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 999998776665 231222 45788888877665555 888999999887777654321 12344444
Q ss_pred eCCCeEEEEe-C-CeEEEEECCCCeEEEEeccc------------CCceEE--EEecCCCEE-EEE-eCCcEEEEec
Q 046773 393 MNQGYALMCV-E-GVIRVWEVEGGEYMYSFRER------------IGEEVI--AFVGDDRHV-AAS-CGTNIHLWDF 451 (453)
Q Consensus 393 ~~~~~lls~s-~-~tIrlWD~~tG~~l~tL~gh------------~~~~V~--a~s~d~~~l-asg-~D~~IklWDl 451 (453)
++ ++.+.. . ++|.+=|++||+.+.++.-. .....+ ++.|++++| +++ ..++|.+-|+
T Consensus 161 -dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 161 -NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp -TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred -CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 44 555444 3 89999999999998888521 011134 778998755 677 6777766554
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-07 Score=90.54 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhhc
Q 046773 45 FVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRRI 97 (453)
Q Consensus 45 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~~ 97 (453)
|++.||.|+.++|++||. +++||.+++||++||.+++|+.||+.+|.+.
T Consensus 4 ~l~~LP~ei~l~IlsfL~----p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLS----PHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHHSCHHHHHHHHHTSC----HHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hhHhCCHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 689999999999999998 8899999999999999999999999999874
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.7e-07 Score=90.48 Aligned_cols=74 Identities=15% Similarity=0.313 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHhhhh-hHHhhcccchhccCCchhHHHhhhhcc--CC--CCcCcchhHHHHHHHhhhhh
Q 046773 46 VEALAAQVAIEASRSVGRLAAAAALA-NVFQVCSTWRAVSRSDLLWHRLTRRIW--GR--TNLLHATWRDEYIYRHRTAQ 120 (453)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~l~-~~aqv~~~W~~l~~~~~~w~~~~~~~~--~~--~~~~~~~Wk~~y~~~~~~~~ 120 (453)
++.||.|+..+|+++|. +++|+ ++++||++|+.|++++.+|+++|++.+ +. ..+...+||..|..+ +..+
T Consensus 51 ~~~LP~ell~~Il~~Lp----~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~~~~~~~~Wk~~y~~~-~~gR 125 (297)
T 2e31_A 51 LAELPEPLLLRVLAELP----ATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQFYFLS-KRRR 125 (297)
T ss_dssp TTSSCHHHHHHHHHTSC----HHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC-----CCSCHHHHHHHH-HHCC
T ss_pred hhhCCHHHHHHHHHcCC----HHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccccCCCCCChhhhhehe-eccc
Confidence 57799999999999987 78999 999999999999999999999998753 11 123567899999885 5566
Q ss_pred cccc
Q 046773 121 NFRT 124 (453)
Q Consensus 121 nw~~ 124 (453)
|+-+
T Consensus 126 NLL~ 129 (297)
T 2e31_A 126 NLLR 129 (297)
T ss_dssp CCSS
T ss_pred ceee
Confidence 6444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00037 Score=67.21 Aligned_cols=215 Identities=8% Similarity=-0.028 Sum_probs=122.4
Q ss_pred EEEEEecC--C-EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeec
Q 046773 147 CRCLTLSD--L-YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 147 v~~lafs~--~-~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~ 221 (453)
.....|++ + +++++..++.|..||. +|+ +.++..+.. .+.+++++ |+.+++...++.|.+++.+.
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~--------~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g 116 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATA--------FTNGNAVDAQQRLVHCEHGRRAITRSDADG 116 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCS--------CEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCC--------ccceeeECCCCCEEEEECCCCEEEEECCCC
Confidence 45677764 5 7888989999999998 565 344443221 35678876 55444444457788887642
Q ss_pred CCcceEEeeeccee-cCceEEEEeCCCceeeEEEE----eeC-------------CCeEEEeeCCCCcEEecccccCCcc
Q 046773 222 VANETRTAHFGSVM-DDGVLIDFTGCSRYWVGLYA----GLA-------------GRAFHIWDRQAEEVFVGGDLTDHNT 283 (453)
Q Consensus 222 ~g~~~~~~~~~~v~-~~~~~v~Fs~dg~~~~~LaS----gS~-------------D~tIrvWD~~tg~~~~g~~l~~~~~ 283 (453)
....+..+..... .....++++|+|+.| +| |+. .+.|..+|.++++...
T Consensus 117 -~~~~~~~~~~~~~~~~~~~i~~d~dG~l~---~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~--------- 183 (305)
T 3dr2_A 117 -QAHLLVGRYAGKRLNSPNDLIVARDGAIW---FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR--------- 183 (305)
T ss_dssp -CEEEEECEETTEECSCCCCEEECTTSCEE---EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE---------
T ss_pred -CEEEEEeccCCCccCCCCCEEECCCCCEE---EeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE---------
Confidence 1222222211111 111237899999863 44 332 2457777777776211
Q ss_pred eeeeeeeeeeccceeEEEEcCCc--eEEEEcC------CcEEEEECCCCceEEEE-ee-c--cCCeEEEEEEecCCEEEE
Q 046773 284 VMGWRMLTEFTEFVGRVRVTSHE--SAVACTS------SRVITFDLRNQGMVLGE-RG-Y--GRGLYVTSVDVNAEAYIV 351 (453)
Q Consensus 284 v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d------~tIrlWDl~t~~~~~~~-~g-~--~~~~~v~~~~~~g~~l~s 351 (453)
+. .....+.++|+|++ ++++... ..|.+||+..++ +... .. . .....-.+++.+|+.+++
T Consensus 184 ------~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~ 255 (305)
T 3dr2_A 184 ------MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSS 255 (305)
T ss_dssp ------EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEEC
T ss_pred ------Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEe
Confidence 11 22345778999886 4455444 579999998654 2111 00 0 000001356667774433
Q ss_pred EeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC
Q 046773 352 VENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 352 ~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~ 403 (453)
+ .+ -|.+++. .++.+..+.... .+..+++.++++.+..++.
T Consensus 256 -~-~~-------gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 256 -S-GT-------GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp -C-SS-------EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEET
T ss_pred -c-CC-------cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcC
Confidence 3 33 4677776 466666665443 5677888877777776665
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0012 Score=71.74 Aligned_cols=274 Identities=11% Similarity=0.088 Sum_probs=144.5
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCC-ccccccceEEEEEEcCCeEEEEeC------CCCEEEEEeecC
Q 046773 150 LTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSD-RLGQFSRAVSGIIITDSQLIFATL------DGDIHVAVIDDV 222 (453)
Q Consensus 150 lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~-~~~~~s~~V~~i~f~g~~LasgS~------D~tIkvWd~~~~ 222 (453)
+++.+.+|..++.|+.|..+|++||+.+.++...... .+...+.. + ..+.+++.++. ++.|..+|..+
T Consensus 113 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P---~-v~~~~v~vg~~~~~~~~~g~v~a~D~~t- 187 (668)
T 1kv9_A 113 VALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP---R-VVKGKVIIGNGGAEYGVRGFVSAYDADT- 187 (668)
T ss_dssp CEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC---E-EETTEEEECCBCTTTCCBCEEEEEETTT-
T ss_pred eEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCC---E-EECCEEEEeCCCCCcCCCCEEEEEECCC-
Confidence 3445678888999999999999999998887642110 01100001 1 22445555443 47788888777
Q ss_pred CcceEEeee--cc---------e------e---------cCc---eEEEEeCCCceeeEEEEeeCCC-------------
Q 046773 223 ANETRTAHF--GS---------V------M---------DDG---VLIDFTGCSRYWVGLYAGLAGR------------- 260 (453)
Q Consensus 223 g~~~~~~~~--~~---------v------~---------~~~---~~v~Fs~dg~~~~~LaSgS~D~------------- 260 (453)
|...-+... +. + . ..+ ..++|+|++.. ++.++.++
T Consensus 188 G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~---vy~~~~~g~~w~~~~~~~~~g 264 (668)
T 1kv9_A 188 GKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDL---LYVGTGNGSPWNREVRSPGGG 264 (668)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTE---EEEECCCEESSCHHHHSTTCC
T ss_pred CcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCE---EEEeCCCCCccccCCCCCCCC
Confidence 511111111 00 0 0 000 13678887664 55666554
Q ss_pred ------eEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee--EEEEcCC---ceEEEEcCCcEEEEECCCCceEEE
Q 046773 261 ------AFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG--RVRVTSH---ESAVACTSSRVITFDLRNQGMVLG 329 (453)
Q Consensus 261 ------tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~--~v~~s~~---~~~vas~d~tIrlWDl~t~~~~~~ 329 (453)
+|..+|.+||+..--.....+. .|.. ....+.. .+.++++ -+++++.++.+.++|.+||+.+.+
T Consensus 265 d~l~~~~v~AlD~~tG~~~W~~~~~~~~---~wd~--~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 265 DNLYLSSILAIRPDTGKLAWHYQVTPGD---SWDF--TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA 339 (668)
T ss_dssp CCTTTTEEEEECTTTCCEEEEEESSTTC---CSCC--CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred CceeeeeEEEEcCCCCceeeEeecCCCc---cccc--cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence 4999999999943100000000 0000 0011111 1223332 134445668999999999987633
Q ss_pred EeeccC----------CeE--------------------------EEEEEecCCEEEEEeCC------------------
Q 046773 330 ERGYGR----------GLY--------------------------VTSVDVNAEAYIVVENR------------------ 355 (453)
Q Consensus 330 ~~g~~~----------~~~--------------------------v~~~~~~g~~l~s~s~d------------------ 355 (453)
...... ... -.+++++...+.....+
T Consensus 340 ~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~ 419 (668)
T 1kv9_A 340 EKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAF 419 (668)
T ss_dssp EESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSC
T ss_pred ccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccccccc
Confidence 211000 000 02445544443332110
Q ss_pred --Cc---------cccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEeccc
Q 046773 356 --EL---------ENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 356 --g~---------~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh 423 (453)
+. ....+..+.-||..||+.+-....... .........++.+..++. +.|++||.++|+.+..++-.
T Consensus 420 ~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 420 NTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp CCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 00 000124788899999998877654332 222233446777777665 99999999999999888644
Q ss_pred CCce--EEEEecCCCE
Q 046773 424 IGEE--VIAFVGDDRH 437 (453)
Q Consensus 424 ~~~~--V~a~s~d~~~ 437 (453)
.+.. -..+..||+.
T Consensus 499 ~~~~~~p~~~~~~G~~ 514 (668)
T 1kv9_A 499 SGIVAAPMTFELAGRQ 514 (668)
T ss_dssp SCCCSCCEEEEETTEE
T ss_pred CCcccCceEEEECCEE
Confidence 3210 1133567763
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.8e-05 Score=75.86 Aligned_cols=192 Identities=8% Similarity=-0.021 Sum_probs=109.1
Q ss_pred EEEEeCCCceeeEEEEee--CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceE-EEEc----
Q 046773 240 LIDFTGCSRYWVGLYAGL--AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESA-VACT---- 312 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS--~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~-vas~---- 312 (453)
.|+|+|+|+. +++.. .++.++||.+.+++... .+... ....++...+..|++++++.+ ++..
T Consensus 21 ~va~~~~g~~---~v~~~~~~~~~~~l~~~~~g~~~~---~p~~~-----~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~ 89 (343)
T 2qe8_A 21 NITLTPDGRL---FLSLHQFYQPEMQVAELTQDGLIP---FPPQS-----GNAIITFDTVLGIKSDGNGIVWMLDNGNQS 89 (343)
T ss_dssp EEEECTTSCE---EEEECGGGCCSCSEEEEETTEEEE---SCCCC-----SSCCCCCSCEEEEEECSSSEEEEEECHHHH
T ss_pred eEEECCCCCE---EEEeCCCCCCceEEEEECCCCeec---CCCcc-----cCcccceeEeeEEEEcCCCcEEEEcCCCCc
Confidence 4899999985 44543 23337788776665321 00000 011234467889999987744 4432
Q ss_pred --CCcEEEEECCCCceEEEEeecc----CCe--EEEEEEecCCE-EEEEe---CCCccccCcceEEEEEcCCCeeEEEEE
Q 046773 313 --SSRVITFDLRNQGMVLGERGYG----RGL--YVTSVDVNAEA-YIVVE---NRELENQNRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 313 --d~tIrlWDl~t~~~~~~~~g~~----~~~--~v~~~~~~g~~-l~s~s---~dg~~~~~~~~i~Iw~~~tg~~v~~l~ 380 (453)
+..|.+||+.+++.+.+..... +.. .-.++++++.. +++-+ .++ .|.+++.++++....+.
T Consensus 90 ~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~-------~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 90 KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA-------ALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC-------EEEEEETTTCCEEEECT
T ss_pred CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC-------eEEEEECCCCCEEEEec
Confidence 4689999999987555442210 111 12345654444 45544 344 88999998876554432
Q ss_pred ecC-----------------------------CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC----------eEEE--
Q 046773 381 LRA-----------------------------DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG----------EYMY-- 418 (453)
Q Consensus 381 ~~~-----------------------------~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG----------~~l~-- 418 (453)
.++ .....++++++++.+..+.. +. +||.+.+. +...
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcce
Confidence 210 12466788888887776655 32 45544321 1000
Q ss_pred EecccCCceE--EEEecCCCEEEEE-eCCcEEEEec
Q 046773 419 SFRERIGEEV--IAFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 419 tL~gh~~~~V--~a~s~d~~~lasg-~D~~IklWDl 451 (453)
...|+.+. . .++.++|+..++. .++.|.+||.
T Consensus 242 ~~~g~~g~-pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 242 ERYSEKPI-CDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp EEEEECCS-CSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred EecccCCC-CceEEECCCCCEEEEccCCCeEEEEEC
Confidence 11122222 1 2678999988888 8899999996
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00017 Score=69.34 Aligned_cols=255 Identities=10% Similarity=0.008 Sum_probs=140.2
Q ss_pred EEEEEec-CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcc
Q 046773 147 CRCLTLS-DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANE 225 (453)
Q Consensus 147 v~~lafs-~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~ 225 (453)
+.++.++ +..|..++.+ |..+|. +|+.+..+..... ......+.+..|..++.++.+..+|.+ |..
T Consensus 62 ~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~--------~~~~~~~~~~~l~v~t~~~~l~~~d~~--g~~ 128 (330)
T 3hxj_A 62 ECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKA--------IVSDFTIFEDILYVTSMDGHLYAINTD--GTE 128 (330)
T ss_dssp EECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-------------CCEEEETTEEEEECTTSEEEEECTT--SCE
T ss_pred ccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCC--------cccCceEECCEEEEEecCCEEEEEcCC--CCE
Confidence 4566665 3455556655 888896 7776554432111 111223336677888888888887765 311
Q ss_pred eEEeee-cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 226 TRTAHF-GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 226 ~~~~~~-~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
..+... ..+. ..+.++++|+ |+.|+.++.|..+|.+ |+.+. . .......+.++.+++
T Consensus 129 ~~~~~~~~~~~---~~~~~~~~g~----l~vgt~~~~l~~~d~~-g~~~~-------------~-~~~~~~~~~~~~~d~ 186 (330)
T 3hxj_A 129 KWRFKTKKAIY---ATPIVSEDGT----IYVGSNDNYLYAINPD-GTEKW-------------R-FKTNDAITSAASIGK 186 (330)
T ss_dssp EEEEECSSCCC---SCCEECTTSC----EEEECTTSEEEEECTT-SCEEE-------------E-EECSSCCCSCCEECT
T ss_pred EEEEcCCCcee---eeeEEcCCCE----EEEEcCCCEEEEECCC-CCEeE-------------E-EecCCCceeeeEEcC
Confidence 111111 1111 1245666776 4457888999999998 76331 1 111123455566765
Q ss_pred CceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC
Q 046773 305 HESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA 383 (453)
Q Consensus 305 ~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~ 383 (453)
++.+..+. +.|..+| .+++.+....... ..+.++..+++ .+..++.++ .+..++ .+++.+..+....
T Consensus 187 ~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~l~v~t~~~-------gl~~~~-~~g~~~~~~~~~~ 254 (330)
T 3hxj_A 187 DGTIYFGS-DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISEDGTIYVTSLDG-------HLYAIN-PDGTEKWRFKTGK 254 (330)
T ss_dssp TCCEEEES-SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTTSCEEEEETTT-------EEEEEC-TTSCEEEEEECSS
T ss_pred CCEEEEEe-CEEEEEC-CCCcEEEEEccCC--cceeceEECCCCeEEEEcCCC-------eEEEEC-CCCCEeEEeeCCC
Confidence 55554455 8899999 6766554432111 12333333333 455566666 555555 3555555554433
Q ss_pred CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEec
Q 046773 384 DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 384 ~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl 451 (453)
.....++... ++.+..++. +.|..+|. +|+.+..+.-.... +. .+.++++..+.+.+|.+++-..
T Consensus 255 ~~~~~~~~~~-~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~-~~~~~~d~~g~l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 255 RIESSPVIGN-TDTIYFGSYDGHLYAINP-DGTEKWNFETGSWI-IATPVIDENGTIYFGTRNGKFYALFN 322 (330)
T ss_dssp CCCSCCEECT-TSCEEEECTTCEEEEECT-TSCEEEEEECSSCC-CSCCEECTTCCEEEECTTSCEEEEEC
T ss_pred CccccceEcC-CCeEEEecCCCCEEEECC-CCcEEEEEEcCCcc-ccceEEcCCCEEEEEcCCCeEEEEec
Confidence 2223333332 445555655 78999996 78877766533333 33 3346777766558899887654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00027 Score=71.94 Aligned_cols=182 Identities=12% Similarity=-0.040 Sum_probs=108.5
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcCC--c
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTSS--R 315 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~--t 315 (453)
.|+|+++|+. +++...++.|++||.++++...- +.. ..... +++++++. +++..++ .
T Consensus 135 ~la~d~~g~l---yv~d~~~~~I~~id~~~g~~~~~--------------~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~ 195 (409)
T 3hrp_A 135 GIAAVGNNTV---LAYQRDDPRVRLISVDDNKVTTV--------------HPG-FKGGK-PAVTKDKQRVYSIGWEGTHT 195 (409)
T ss_dssp EEEECSTTEE---EEEETTTTEEEEEETTTTEEEEE--------------EET-CCBCB-CEECTTSSEEEEEBSSTTCE
T ss_pred EEEEeCCCCE---EEEecCCCcEEEEECCCCEEEEe--------------ecc-CCCCc-eeEecCCCcEEEEecCCCce
Confidence 5899999984 45666779999999998873210 011 11122 78887763 4444433 7
Q ss_pred EEEEECCCCceEEEE--e-e-ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-----ecCCCe
Q 046773 316 VITFDLRNQGMVLGE--R-G-YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-----LRADRN 386 (453)
Q Consensus 316 IrlWDl~t~~~~~~~--~-g-~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-----~~~~~v 386 (453)
|.++|..++...... . . ......-.++++++..+..+..++ .|..++.+++.. ..+. ......
T Consensus 196 I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~-------~I~~~d~~~~~~-~~~~~~~~~g~~~~~ 267 (409)
T 3hrp_A 196 VYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNK-------NFGRFNVKTQEV-TLIKQLELSGSLGTN 267 (409)
T ss_dssp EEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTC-------EEEEEETTTCCE-EEEEECCCCSCCCCS
T ss_pred EEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCC-------cEEEEECCCCCE-EEEecccccCCCCCC
Confidence 999998876543222 0 1 111112245666444454455555 788888887753 2221 111112
Q ss_pred -e-EEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEecccC---------------CceEE--EEecCCCEEEEE--eC
Q 046773 387 -V-NVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFRERI---------------GEEVI--AFVGDDRHVAAS--CG 443 (453)
Q Consensus 387 -~-~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~gh~---------------~~~V~--a~s~d~~~lasg--~D 443 (453)
. .++++++++.+..+.. +.|+.||... + +.++.|+. .. .. ++.|||++.++- .+
T Consensus 268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~-P~gia~d~dG~lyvad~~~~ 344 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQ-PNGMTVDEDGNFYIVDGFKG 344 (409)
T ss_dssp SCCEEEEETTTTEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSS-EEEEEECTTCCEEEEETTTT
T ss_pred ccccEEEeCCCCEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCC-CeEEEEeCCCCEEEEeCCCC
Confidence 2 7888887677665544 8999999764 3 44454442 22 33 678999866654 46
Q ss_pred CcEEEEec
Q 046773 444 TNIHLWDF 451 (453)
Q Consensus 444 ~~IklWDl 451 (453)
+.|+.||+
T Consensus 345 ~~I~~~~~ 352 (409)
T 3hrp_A 345 YCLRKLDI 352 (409)
T ss_dssp CEEEEEET
T ss_pred CEEEEEEC
Confidence 78999984
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00011 Score=70.65 Aligned_cols=252 Identities=8% Similarity=-0.026 Sum_probs=134.6
Q ss_pred EEec-CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-CCeEEEEeCCCCEEEEEeecCCcceE
Q 046773 150 LTLS-DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDIHVAVIDDVANETR 227 (453)
Q Consensus 150 lafs-~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIkvWd~~~~g~~~~ 227 (453)
..++ +..|..|+.++.|..|| .+|+.+..+..+. ..+.++.++ +..|..++.+ +..+|.+..-...+
T Consensus 25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~--------~~~~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~ 93 (330)
T 3hxj_A 25 PILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGE--------IIECRPSIGKDGTIYFGSDK--VYAINPDGTEKWRF 93 (330)
T ss_dssp CEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGG--------EEEECCEETTTTEECCSSCE--EEEECCCGGGGGGS
T ss_pred ceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCC--------CcccceEEecCCcEEEecCc--EEEECCCCcEEEEE
Confidence 4443 34666778899999999 9999876654211 134556665 4455555555 77777532001111
Q ss_pred EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-
Q 046773 228 TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE- 306 (453)
Q Consensus 228 ~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~- 306 (453)
... ..... ...+. +++ |+.|+.++.|..+|.+ |+... . .......+.++.+++++
T Consensus 94 ~~~-~~~~~---~~~~~-~~~----l~v~t~~~~l~~~d~~-g~~~~-------------~-~~~~~~~~~~~~~~~~g~ 149 (330)
T 3hxj_A 94 DTK-KAIVS---DFTIF-EDI----LYVTSMDGHLYAINTD-GTEKW-------------R-FKTKKAIYATPIVSEDGT 149 (330)
T ss_dssp CC------C---CEEEE-TTE----EEEECTTSEEEEECTT-SCEEE-------------E-EECSSCCCSCCEECTTSC
T ss_pred ECC-CCccc---CceEE-CCE----EEEEecCCEEEEEcCC-CCEEE-------------E-EcCCCceeeeeEEcCCCE
Confidence 111 11110 12222 444 5567889999999998 76321 1 01112234455666444
Q ss_pred eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCe
Q 046773 307 SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRN 386 (453)
Q Consensus 307 ~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v 386 (453)
+.+++.++.|..+|.+ ++.+..............++.++. +..++ + .+..++ .+++.+..+......+
T Consensus 150 l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~-------~l~~~d-~~g~~~~~~~~~~~~~ 217 (330)
T 3hxj_A 150 IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--D-------KVYAIN-PDGTEKWNFYAGYWTV 217 (330)
T ss_dssp EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--S-------SEEEEC-TTSCEEEEECCSSCCC
T ss_pred EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--C-------EEEEEC-CCCcEEEEEccCCcce
Confidence 4555556889999999 665444322211111122333444 44444 5 566777 6776665555444445
Q ss_pred eEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEe
Q 046773 387 VNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWD 450 (453)
Q Consensus 387 ~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWD 450 (453)
.+++...++...+.+.++.|..+|. +|+.+..+...... +. .+.++++..++..++.|..+|
T Consensus 218 ~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~-~~~~~~~~~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 218 TRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRI-ESSPVIGNTDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp SCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCC-CSCCEECTTSCEEEECTTCEEEEEC
T ss_pred eceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCc-cccceEcCCCeEEEecCCCCEEEEC
Confidence 5666655554444333466777774 67776665433222 22 333456555444666777666
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0032 Score=66.96 Aligned_cols=112 Identities=10% Similarity=0.103 Sum_probs=64.7
Q ss_pred cCCEEEEEeC-CCcEEEEEC-CCCeEEEEecCCCCC-ccc-ccc-ceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceE
Q 046773 153 SDLYLACGFA-DGAVRLFDL-TTRLHVRTFRPQHSD-RLG-QFS-RAVSGIIITDSQLIFATLDGDIHVAVIDDVANETR 227 (453)
Q Consensus 153 s~~~LaSGS~-D~TIrlWD~-~tg~~~~tl~gh~~~-~~~-~~s-~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~ 227 (453)
.+..|..++. ++.|.-.|+ +||+.+.++...... ... .+. ..-+++++++.+|+.++.|+.+...|..+ |...-
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~t-G~~~W 139 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKT-GKINW 139 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTT-CCEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCC-CCEEE
Confidence 3555666666 899999999 999999887532110 000 000 00123456788888899999998888877 51111
Q ss_pred Eeeec------ceecCceEEEEeCCCceeeEEEEeeC------CCeEEEeeCCCCcEE
Q 046773 228 TAHFG------SVMDDGVLIDFTGCSRYWVGLYAGLA------GRAFHIWDRQAEEVF 273 (453)
Q Consensus 228 ~~~~~------~v~~~~~~v~Fs~dg~~~~~LaSgS~------D~tIrvWD~~tg~~~ 273 (453)
+.... .+.... .| . +++ ++.++. |+.|..+|.+||+.+
T Consensus 140 ~~~~~~~~~~~~~~~~P-~v--~-~g~----v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAP-FV--A-KDT----VLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp EEECCCGGGTCBCCSCC-EE--E-TTE----EEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred EecCCCCCccceeccCC-EE--E-CCE----EEEEecCCccCCCCEEEEEECCCCcEE
Confidence 11111 111000 11 1 333 344443 789999999999943
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00084 Score=71.54 Aligned_cols=77 Identities=8% Similarity=0.032 Sum_probs=49.5
Q ss_pred ceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCce--EEEEecCCCEEE
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEE--VIAFVGDDRHVA 439 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~--V~a~s~d~~~la 439 (453)
..+..+|..+|+.+-++..... +.+......++.+..++. +.|+.+|.+||+.+.+++-..... -..+.+||+.++
T Consensus 444 g~l~a~D~~tG~~~W~~~~~~~-~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 444 GQIRAFDLTTGKAKWTKWEKFA-AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSC-CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CeEEEEECCCCCEEEEecCCCC-ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 4788899999988777654321 222222334566666665 999999999999998886332110 113457887655
Q ss_pred E
Q 046773 440 A 440 (453)
Q Consensus 440 s 440 (453)
.
T Consensus 523 ~ 523 (571)
T 2ad6_A 523 G 523 (571)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0014 Score=62.95 Aligned_cols=172 Identities=10% Similarity=0.022 Sum_probs=107.7
Q ss_pred EEEeCCCceeeEEEEeeCC--CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc-CCcEE
Q 046773 241 IDFTGCSRYWVGLYAGLAG--RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT-SSRVI 317 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D--~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~-d~tIr 317 (453)
+.|+ +++. ..|.+.+ .+|++.|++||+.+.-.. +... -+--.+.+.++.+.++.. ++.+.
T Consensus 48 L~~~-~~~L---yestG~~g~S~v~~vD~~Tgkv~~~~~------------l~~~-~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 48 FFYR-NGYF---YESTGLNGRSSIRKVDIESGKTLQQIE------------LGKR-YFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEE-TTEE---EEEEEETTEEEEEEECTTTCCEEEEEE------------CCTT-CCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEE-CCEE---EEECCCCCCceEEEEECCCCcEEEEEe------------cCCc-cceeEEEEeCCEEEEEEeeCCEEE
Confidence 6787 5553 3455554 489999999999542111 1110 111236667777777765 47899
Q ss_pred EEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCC-----CeeEEEEe
Q 046773 318 TFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRAD-----RNVNVMGC 392 (453)
Q Consensus 318 lWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~-----~v~~~~~~ 392 (453)
++|++|.+.+.+......+ ..++++++.++....+. .+.+.|..|.+.+.++....+ .+..+.+
T Consensus 111 v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~-------~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~- 179 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTP-------VLRFLDPESLTPVRTITVTAHGEELPELNELEW- 179 (262)
T ss_dssp EEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSS-------EEEEECTTTCSEEEEEECEETTEECCCEEEEEE-
T ss_pred EEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCC-------eEEEEcCCCCeEEEEEEeccCCccccccceeEE-
Confidence 9999998877665321221 35667888777655455 788889999888777655321 1122332
Q ss_pred eCCCeEEEEe-C-CeEEEEECCCCeEEEEeccc-----------CCceEE--EEecCCCEE-EEE
Q 046773 393 MNQGYALMCV-E-GVIRVWEVEGGEYMYSFRER-----------IGEEVI--AFVGDDRHV-AAS 441 (453)
Q Consensus 393 ~~~~~lls~s-~-~tIrlWD~~tG~~l~tL~gh-----------~~~~V~--a~s~d~~~l-asg 441 (453)
.++ ++.+.. . ++|.+-|.+||+.+.++.-. .+...+ |+.|++++| ++|
T Consensus 180 ~~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 180 VDG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp ETT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ECC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 354 444443 3 89999999999998877421 122134 778887754 778
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0015 Score=67.42 Aligned_cols=162 Identities=9% Similarity=0.060 Sum_probs=90.6
Q ss_pred CeEEEeeCCCCcEEecccccCCcceeeeeeeeeec-cceeEEEEcCCc-eEEEEc--------------------CCcEE
Q 046773 260 RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT-EFVGRVRVTSHE-SAVACT--------------------SSRVI 317 (453)
Q Consensus 260 ~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~-~~v~~v~~s~~~-~~vas~--------------------d~tIr 317 (453)
+.|-+.|.+|++...- |. ..... ..-..+.++|+. .+++|. +++|.
T Consensus 164 g~v~vlD~~T~~v~~~-----------~~-~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~ 231 (462)
T 2ece_A 164 GGILMLDHYSFEPLGK-----------WE-IDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIH 231 (462)
T ss_dssp CEEEEECTTTCCEEEE-----------CC-SBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEE
T ss_pred CeEEEEECCCCeEEEE-----------Ec-cCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEE
Confidence 7899999999884321 10 00011 112235667665 444443 57899
Q ss_pred EEECCCCceEEEE-eeccCCeEEE----EEEecCCEEEEEe------CCCccccCcceEEEEEcCCCe--eEEEEEec--
Q 046773 318 TFDLRNQGMVLGE-RGYGRGLYVT----SVDVNAEAYIVVE------NRELENQNRRLAIVRRVDTFE--EVCRFSLR-- 382 (453)
Q Consensus 318 lWDl~t~~~~~~~-~g~~~~~~v~----~~~~~g~~l~s~s------~dg~~~~~~~~i~Iw~~~tg~--~v~~l~~~-- 382 (453)
+||+.+++.+.+. .+.. +.... .+++++....+++ .++ ++.+|..+.++ .++.+...
T Consensus 232 v~D~~~~k~~~tI~vg~~-g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss-------~V~v~~~d~g~~~~~~vIdi~~~ 303 (462)
T 2ece_A 232 FWDLRKRKRIHSLTLGEE-NRMALELRPLHDPTKLMGFINMVVSLKDLSS-------SIWLWFYEDGKWNAEKVIEIPAE 303 (462)
T ss_dssp EEETTTTEEEEEEESCTT-EEEEEEEEECSSTTCCEEEEEEEEETTTCCE-------EEEEEEEETTEEEEEEEEEECCE
T ss_pred EEECCCCcEeeEEecCCC-CCccceeEeeECCCCCEEEEEEeeeccCCCc-------eEEEEEecCCceeEEEEEeCCCc
Confidence 9999987655444 2211 11112 2366777655544 344 66666555442 12221111
Q ss_pred ----------------CCCeeEEEEeeCCCeEEEEeC--CeEEEEECCC---CeEEEEec-c-c---------C----Cc
Q 046773 383 ----------------ADRNVNVMGCMNQGYALMCVE--GVIRVWEVEG---GEYMYSFR-E-R---------I----GE 426 (453)
Q Consensus 383 ----------------~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~t---G~~l~tL~-g-h---------~----~~ 426 (453)
+.....+..++|+++|..+.- ++|.++|+.. .+.+..+. | . . +.
T Consensus 304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggP 383 (462)
T 2ece_A 304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAP 383 (462)
T ss_dssp ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCC
T ss_pred cccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCC
Confidence 123456778899999876654 9999999863 35555543 2 1 0 12
Q ss_pred eEEEEecCCCEEEEE
Q 046773 427 EVIAFVGDDRHVAAS 441 (453)
Q Consensus 427 ~V~a~s~d~~~lasg 441 (453)
.-.+++|||++|..+
T Consensus 384 r~~~lSpDGk~LyVa 398 (462)
T 2ece_A 384 QMLEISRDGRRVYVT 398 (462)
T ss_dssp CCEEECTTSSEEEEE
T ss_pred CEEEEcCCCCEEEEE
Confidence 123789999988765
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.019 Score=61.23 Aligned_cols=217 Identities=12% Similarity=0.073 Sum_probs=111.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccc-eEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeec
Q 046773 154 DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSR-AVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFG 232 (453)
Q Consensus 154 ~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~-~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~ 232 (453)
+..|..++.++.|.-.|++||+.+.++.........+... .-+++++.+.+|+.++.|+.+.-.|..+ |...-+....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~T-G~~~W~~~~~ 146 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNT-GKVVWKKKFA 146 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSS-CCEEEEEECS
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCC-CCEEeeecCC
Confidence 4444445553349999999999998876432110000000 0123455678888899999988888877 6221111111
Q ss_pred c-----eecCceEEEEeC--CCceeeEEEEee------CCCeEEEeeCCCCcEEecccccC---------------Ccce
Q 046773 233 S-----VMDDGVLIDFTG--CSRYWVGLYAGL------AGRAFHIWDRQAEEVFVGGDLTD---------------HNTV 284 (453)
Q Consensus 233 ~-----v~~~~~~v~Fs~--dg~~~~~LaSgS------~D~tIrvWD~~tg~~~~g~~l~~---------------~~~v 284 (453)
. -....-.| +.. +|+. .|+.++ .++.|.-+|.+||+.+--....+ ....
T Consensus 147 ~~~~~~~~~~sP~v-~~~~~~G~~--~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 147 DHGAGYTMTGAPTI-VKDGKTGKV--LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp CGGGTCBCCSCCEE-EECTTTCCE--EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred CCCcCcccccCCEE-eCCCcCCcE--EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 0 00001012 211 2332 244544 37899999999999432100000 0000
Q ss_pred eeeee-------------eeeeccceeEEEEcCC--ceEEEEc--------------------C----CcEEEEECCCCc
Q 046773 285 MGWRM-------------LTEFTEFVGRVRVTSH--ESAVACT--------------------S----SRVITFDLRNQG 325 (453)
Q Consensus 285 ~~w~~-------------l~~h~~~v~~v~~s~~--~~~vas~--------------------d----~tIrlWDl~t~~ 325 (453)
..|.. .-+...+ ...+++++ .+++++. | ++|..+|++||+
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w-~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPW-QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCC-SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred ccCCCccccccccccccccCCcccc-CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 00000 0011111 23455543 2344442 2 479999999998
Q ss_pred eEEEEe--ecc------CCeEEE-EEE-ecCC---EEEEEeCCCccccCcceEEEEEcCCCeeEEEEEec
Q 046773 326 MVLGER--GYG------RGLYVT-SVD-VNAE---AYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLR 382 (453)
Q Consensus 326 ~~~~~~--g~~------~~~~v~-~~~-~~g~---~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~ 382 (453)
.+-... .|. ....+. ... .+|+ .++.++.+| .+.+.|.+||+.+..+...
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G-------~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNG-------FFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTS-------EEEEEETTTCCEEEEEESS
T ss_pred EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCc-------eEEEEECCCCCEecccccc
Confidence 765542 121 011111 121 3564 566778888 9999999999988776554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0061 Score=57.84 Aligned_cols=172 Identities=10% Similarity=0.044 Sum_probs=106.0
Q ss_pred EEEeCCCceeeEEEEeeCC--CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc-CCcEE
Q 046773 241 IDFTGCSRYWVGLYAGLAG--RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT-SSRVI 317 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D--~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~-d~tIr 317 (453)
+.|++ ++. ..|.+.+ .+|++.|++||+.+.-..+ ..+ -.--.+.+.++.+..... ++.+.
T Consensus 26 L~~~~-~~L---yestG~~g~S~v~~vD~~tgkv~~~~~l------------~~~-~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 26 LFYLR-GHL---YESTGETGRSSVRKVDLETGRILQRAEV------------PPP-YFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEET-TEE---EEEECCTTSCEEEEEETTTCCEEEEEEC------------CTT-CCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEC-CEE---EEECCCCCCceEEEEECCCCCEEEEEeC------------CCC-cceeEEEEeCCEEEEEEeeCCEEE
Confidence 56776 342 2343433 5999999999995431111 111 011235566677777665 47899
Q ss_pred EEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC-----eeEEEEe
Q 046773 318 TFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR-----NVNVMGC 392 (453)
Q Consensus 318 lWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~-----v~~~~~~ 392 (453)
++|++|.+.+.+......+ ..+.+++..++....+. .+.+.|..|.+.+.++....+. +..+. +
T Consensus 89 v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~-------~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe-~ 157 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTA-------VIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE-W 157 (243)
T ss_dssp EEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSS-------EEEEECTTTCCEEEEEECEETTEECCCEEEEE-E
T ss_pred EEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCC-------eEEEEeCCCCeEEEEEEEccCCcccccceeeE-E
Confidence 9999998877665322222 46667888777665555 8889999998888777553221 11222 2
Q ss_pred eCCCeEEEEe-C-CeEEEEECCCCeEEEEeccc------------CCceEE--EEecCCCE-EEEE
Q 046773 393 MNQGYALMCV-E-GVIRVWEVEGGEYMYSFRER------------IGEEVI--AFVGDDRH-VAAS 441 (453)
Q Consensus 393 ~~~~~lls~s-~-~tIrlWD~~tG~~l~tL~gh------------~~~~V~--a~s~d~~~-lasg 441 (453)
.++ ++.+.. . ..|.+-|.+||+.+.++.-. .+...+ |+.|++++ +++|
T Consensus 158 ~~G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 158 VNG-ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp ETT-EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eCC-EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 344 444333 3 89999999999998876411 222245 67787665 5888
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0018 Score=66.64 Aligned_cols=234 Identities=12% Similarity=0.130 Sum_probs=121.6
Q ss_pred CCCcEEEEECCCCeEEEEecCC--CCC--ccccccceEEEEEEcCCeEEEEeC--CCCEEEEEeecCC--cceEEeeecc
Q 046773 162 ADGAVRLFDLTTRLHVRTFRPQ--HSD--RLGQFSRAVSGIIITDSQLIFATL--DGDIHVAVIDDVA--NETRTAHFGS 233 (453)
Q Consensus 162 ~D~TIrlWD~~tg~~~~tl~gh--~~~--~~~~~s~~V~~i~f~g~~LasgS~--D~tIkvWd~~~~g--~~~~~~~~~~ 233 (453)
.+++|-++|+.|++.++++.-. ... ...|+ .+ .+..||++|+.+.. +++|-|-|+.+ + +.++.. +.
T Consensus 147 ~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~--~~-~~spDGk~lyV~n~~~~~~VsVID~~t-~kvv~~I~v--~g 220 (426)
T 3c75_H 147 RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW--MN-ALTPDNKNLLFYQFSPAPAVGVVDLEG-KTFDRMLDV--PD 220 (426)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG--GS-EECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEEC--CS
T ss_pred CCCEEEEEECCCCcEEEEEECCCccccccCCCcc--eE-EEcCCCCEEEEEecCCCCeEEEEECCC-CeEEEEEEc--CC
Confidence 4789999999999998887411 000 00111 11 14456778877664 57788888776 3 111111 10
Q ss_pred eecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccce-eEEEEcCC--ceEEE
Q 046773 234 VMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFV-GRVRVTSH--ESAVA 310 (453)
Q Consensus 234 v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v-~~v~~s~~--~~~va 310 (453)
. ....|+|+. .+++-+.|+++-+-|..+++...-.+ ..+.--..++ ..+.|+++ .++..
T Consensus 221 -----~-~~~~p~g~~--~~v~~~~dG~~~~V~~~~~~v~~~~~----------~~~~v~~~p~~~~~~~~~dg~~~~~~ 282 (426)
T 3c75_H 221 -----C-YHIFPASPT--VFYMNCRDGSLARVDFADGETKVTNT----------EVFHTEDELLINHPAFSLRSGRLVWP 282 (426)
T ss_dssp -----E-EEEEEEETT--EEEEEETTSSEEEEECCTTCCEEEEC----------CCCSCTTSCBCSCCEECTTTCEEEEE
T ss_pred -----c-eeeccCCCc--EEEEEcCCCCEEEEECCCCcEEEEee----------eeeccCCCceeeEeeecCCCCEEEEE
Confidence 0 111222221 12233344444444443333110000 0000000010 01233433 34444
Q ss_pred EcCCcEEEEECCCCceEEE--Ee---------e-ccCCeEEEEEEecCCEEEEEeCCCcc-c--cCcceEEEEEcCCCee
Q 046773 311 CTSSRVITFDLRNQGMVLG--ER---------G-YGRGLYVTSVDVNAEAYIVVENRELE-N--QNRRLAIVRRVDTFEE 375 (453)
Q Consensus 311 s~d~tIrlWDl~t~~~~~~--~~---------g-~~~~~~v~~~~~~g~~l~s~s~dg~~-~--~~~~~i~Iw~~~tg~~ 375 (453)
+..++|.+.|+.++..... .. + ........+++++++++.++...+.+ . +..+++.|.|..+.+.
T Consensus 283 s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv 362 (426)
T 3c75_H 283 TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER 362 (426)
T ss_dssp BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE
Confidence 4556788888765432110 00 0 00011124788998877665421100 0 1123788999999998
Q ss_pred EEEEEecCCCeeEEEEeeCCC-eEEEEe-C-CeEEEEECCCCeEEEEe
Q 046773 376 VCRFSLRADRNVNVMGCMNQG-YALMCV-E-GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~-~lls~s-~-~tIrlWD~~tG~~l~tL 420 (453)
+.++.... ....+.++++++ +++++. . ++|.+.|++|++.+.++
T Consensus 363 v~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 363 INKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 88876432 245788999998 777666 3 99999999999999887
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0031 Score=60.66 Aligned_cols=171 Identities=8% Similarity=-0.014 Sum_probs=108.6
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc-CCcEEEE
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT-SSRVITF 319 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~-d~tIrlW 319 (453)
|.|+. ++. ..|.+.++.|++.|++||+.+.-. +.. .-+--.+.+.++.+.++.. ++.+.++
T Consensus 60 L~~~~-~~L---y~stG~~g~v~~iD~~Tgkv~~~~-------------l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 60 LVFHQ-GHF---FESTGHQGTLRQLSLESAQPVWME-------------RLG-NIFAEGLASDGERLYQLTWTEGLLFTW 121 (268)
T ss_dssp EEEET-TEE---EEEETTTTEEEECCSSCSSCSEEE-------------ECT-TCCEEEEEECSSCEEEEESSSCEEEEE
T ss_pred EEEEC-CEE---EEEcCCCCEEEEEECCCCcEEeEE-------------CCC-CcceeEEEEeCCEEEEEEccCCEEEEE
Confidence 66764 332 456667788999999999843100 111 0111236777778877765 4789999
Q ss_pred ECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCC-----eeEEEEeeC
Q 046773 320 DLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADR-----NVNVMGCMN 394 (453)
Q Consensus 320 Dl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~-----v~~~~~~~~ 394 (453)
|++|.+.+.+......+ ..+++++..|+....++ .+.+.|..|.+.+.++....+. +..+. +.+
T Consensus 122 D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSdGs~-------~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe-~~d 190 (268)
T 3nok_A 122 SGMPPQRERTTRYSGEG---WGLCYWNGKLVRSDGGT-------MLTFHEPDGFALVGAVQVKLRGQPVELINELE-CAN 190 (268)
T ss_dssp ETTTTEEEEEEECSSCC---CCEEEETTEEEEECSSS-------EEEEECTTTCCEEEEEECEETTEECCCEEEEE-EET
T ss_pred ECCcCcEEEEEeCCCce---eEEecCCCEEEEECCCC-------EEEEEcCCCCeEEEEEEeCCCCcccccccccE-EeC
Confidence 99998877665322221 45668888887766566 8889999999888776543211 12222 235
Q ss_pred CCeEEEEe-C-CeEEEEECCCCeEEEEeccc------------CCceEE--EEecCCC-EEEEE
Q 046773 395 QGYALMCV-E-GVIRVWEVEGGEYMYSFRER------------IGEEVI--AFVGDDR-HVAAS 441 (453)
Q Consensus 395 ~~~lls~s-~-~tIrlWD~~tG~~l~tL~gh------------~~~~V~--a~s~d~~-~lasg 441 (453)
+ ++.+.. . ++|.+=|.+||+.+.++.-. .+...+ |+.|+++ .+++|
T Consensus 191 G-~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 191 G-VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp T-EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred C-EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 5 444443 3 89999999999998877421 122245 6667654 56888
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00036 Score=70.42 Aligned_cols=236 Identities=11% Similarity=0.072 Sum_probs=123.7
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCCcc--ccccceEEEEEEcCCeEEEEeC--CCCEEE--EEeecCCcceEEeeeccee
Q 046773 162 ADGAVRLFDLTTRLHVRTFRPQHSDRL--GQFSRAVSGIIITDSQLIFATL--DGDIHV--AVIDDVANETRTAHFGSVM 235 (453)
Q Consensus 162 ~D~TIrlWD~~tg~~~~tl~gh~~~~~--~~~s~~V~~i~f~g~~LasgS~--D~tIkv--Wd~~~~g~~~~~~~~~~v~ 235 (453)
.|++|.+||+.|++.++++.-+....+ +..... -++..||+.|+.+.. +.++.| +|..+ ...+.. +.
T Consensus 94 ~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~-ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v--~~-- 166 (368)
T 1mda_H 94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHI-IGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKS--AS-- 166 (368)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTS-EEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEEC--SS--
T ss_pred CCCEEEEEECCCCCEEEEEECCCccccccCCCcce-EEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEEC--CC--
Confidence 478999999999999999853200000 000001 124446777777764 356777 77654 111111 00
Q ss_pred cCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCC-----CcEEecccccCCcceeeeeeeeeeccceeEEEEc-CCceEE
Q 046773 236 DDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQA-----EEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT-SHESAV 309 (453)
Q Consensus 236 ~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~t-----g~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s-~~~~~v 309 (453)
. +.+.|+|+. .+++.+.|+++-+-|+++ ++...-.+ . . +. .+ ..+. .+. ++.++.
T Consensus 167 --~--~~~~p~g~~--~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t---~-~---i~--vg-~~P~---~~~~~~~~~~ 227 (368)
T 1mda_H 167 --C--FHIHPGAAA--THYLGSCPASLAASDLAAAPAAAGIVGAQCT---G-A---QN--CS-SQAA---QANYPGMLVW 227 (368)
T ss_dssp --C--CCCEEEETT--EEECCCCTTSCEEEECCSSCCCCEECCCCSC---T-T---SC--BC-SCCE---EETTTTEEEE
T ss_pred --c--eEEccCCCe--EEEEEcCCCCEEEEECccccccCCeEEEEee---e-e---ee--CC-CCcc---ccccCCEEEE
Confidence 0 122344443 133455677766667766 33110000 0 0 00 00 1222 122 222344
Q ss_pred EEcCCcEEEEECCCCce--EEEEe---------e-ccCCeEEEEEEecCCEEEEEeC-C-CccccCcceEEEEEcCCCee
Q 046773 310 ACTSSRVITFDLRNQGM--VLGER---------G-YGRGLYVTSVDVNAEAYIVVEN-R-ELENQNRRLAIVRRVDTFEE 375 (453)
Q Consensus 310 as~d~tIrlWDl~t~~~--~~~~~---------g-~~~~~~v~~~~~~g~~l~s~s~-d-g~~~~~~~~i~Iw~~~tg~~ 375 (453)
.+. ++|.+-|+.++.. +.+.. + ........+|+++++++..+.. . +.....+....|+|+.+.+.
T Consensus 228 vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v 306 (368)
T 1mda_H 228 AVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT 306 (368)
T ss_dssp CBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE
T ss_pred EcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE
Confidence 444 6777777764321 11100 0 0001111468999888766432 1 10000000445999999988
Q ss_pred EEEEEecCCCeeEEEEeeCCCeE-EEEe-C-CeEEEEECCCCeEEEEecccCC
Q 046773 376 VCRFSLRADRNVNVMGCMNQGYA-LMCV-E-GVIRVWEVEGGEYMYSFRERIG 425 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~~l-ls~s-~-~tIrlWD~~tG~~l~tL~gh~~ 425 (453)
+..+.... ....+.++++++++ ++.. . ++|.++|++|++.+.+++....
T Consensus 307 v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 307 SGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp EECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred EEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence 87775543 35678889998854 4555 4 9999999999999999975443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.028 Score=60.17 Aligned_cols=112 Identities=10% Similarity=0.117 Sum_probs=63.2
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCeEEEEecCCCCCcccc--cc-ceEEEEEE--cCCe----EEEEeCCCCEEEEEeecC
Q 046773 154 DLYLACGFA-DGAVRLFDL-TTRLHVRTFRPQHSDRLGQ--FS-RAVSGIII--TDSQ----LIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 154 ~~~LaSGS~-D~TIrlWD~-~tg~~~~tl~gh~~~~~~~--~s-~~V~~i~f--~g~~----LasgS~D~tIkvWd~~~~ 222 (453)
+..|..++. ++.|.-.|+ +||+.+.++.........+ +. ...+++++ .+.+ |+.++.|+.+.-.|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T- 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET- 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT-
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC-
Confidence 556666666 899999999 9999998876322110000 00 00123455 5555 88889999888888777
Q ss_pred CcceEEeeecc-----eecCceEEEEeCCCceeeEEEEee------CCCeEEEeeCCCCcEE
Q 046773 223 ANETRTAHFGS-----VMDDGVLIDFTGCSRYWVGLYAGL------AGRAFHIWDRQAEEVF 273 (453)
Q Consensus 223 g~~~~~~~~~~-----v~~~~~~v~Fs~dg~~~~~LaSgS------~D~tIrvWD~~tg~~~ 273 (453)
|...-+..... .....-.| . +++ ++.++ .++.|+-+|.+||+++
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v--~-~g~----V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYV--V-KDK----VIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEE--E-TTE----EEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCEEEeecCCCCCccceeecCCEE--E-CCE----EEEEecccccCCCCeEEEEECCCCcEE
Confidence 62211111110 00000011 1 333 33444 3789999999999943
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.028 Score=53.98 Aligned_cols=192 Identities=9% Similarity=-0.039 Sum_probs=110.4
Q ss_pred EEEEEecC-CE-EEEEe--CCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecC
Q 046773 147 CRCLTLSD-LY-LACGF--ADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDV 222 (453)
Q Consensus 147 v~~lafs~-~~-LaSGS--~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~ 222 (453)
...|+|++ .. .+|.+ .+++|++.|+.||+.++++.-... . ...+++++++.|..
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~------fgeGi~~~g~~lyv--------------- 80 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-Y------FGEGLTLLNEKLYQ--------------- 80 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-C------CEEEEEEETTEEEE---------------
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-c------ceEEEEEeCCEEEE---------------
Confidence 46788987 43 33333 268999999999999888642111 0 11223333332211
Q ss_pred CcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEE
Q 046773 223 ANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRV 302 (453)
Q Consensus 223 g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~ 302 (453)
+.-.+++|-++|.+|.+.+.- ++ .+ ...-..+..
T Consensus 81 --------------------------------~t~~~~~v~viD~~t~~v~~~--i~-----------~g-~~~g~glt~ 114 (266)
T 2iwa_A 81 --------------------------------VVWLKNIGFIYDRRTLSNIKN--FT-----------HQ-MKDGWGLAT 114 (266)
T ss_dssp --------------------------------EETTCSEEEEEETTTTEEEEE--EE-----------CC-SSSCCEEEE
T ss_pred --------------------------------EEecCCEEEEEECCCCcEEEE--EE-----------CC-CCCeEEEEE
Confidence 122456778888888773310 00 00 000112445
Q ss_pred cCCceEEEEcCCcEEEEECCCCceEEEE-eecc-CCe-EEEEEEecCCEEEEEe-CCCccccCcceEEEEEcCCCeeEEE
Q 046773 303 TSHESAVACTSSRVITFDLRNQGMVLGE-RGYG-RGL-YVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVDTFEEVCR 378 (453)
Q Consensus 303 s~~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~-~~~-~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~tg~~v~~ 378 (453)
+++.++++..+++|.+.|.++.+.+.+. .+.. ... ..+.+.+.+..+.... .++ +|.+-|..+++.+..
T Consensus 115 Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~-------~V~vID~~tg~V~~~ 187 (266)
T 2iwa_A 115 DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTD-------CIARISAKDGTLLGW 187 (266)
T ss_dssp CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSS-------EEEEEETTTCCEEEE
T ss_pred CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCC-------eEEEEECCCCcEEEE
Confidence 5555666655678999999998766553 2211 100 1234443334444333 345 889999999998888
Q ss_pred EEecC-------------CCeeEEEEeeCCCeEEEEeC--CeEEEEECCC
Q 046773 379 FSLRA-------------DRNVNVMGCMNQGYALMCVE--GVIRVWEVEG 413 (453)
Q Consensus 379 l~~~~-------------~~v~~~~~~~~~~~lls~s~--~tIrlWD~~t 413 (453)
+.+.+ +....++++++++++..+.. .+|.+=|+.+
T Consensus 188 I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 188 ILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 87641 23467888888887765554 7776666654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.03 Score=53.67 Aligned_cols=182 Identities=7% Similarity=-0.042 Sum_probs=103.2
Q ss_pred eEEEEEEecCC-EEEEEeCCC--cEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeec
Q 046773 145 LTCRCLTLSDL-YLACGFADG--AVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 145 v~v~~lafs~~-~LaSGS~D~--TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~ 221 (453)
-+...|.|++. +.+|.+.++ +|++.|++||+.++++.-.. ..| -.++++++++|..
T Consensus 43 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~F------geGit~~g~~ly~-------------- 101 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYF------GEGISDWKDKIVG-------------- 101 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCC------EEEEEEETTEEEE--------------
T ss_pred cccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccc------eeEEEEeCCEEEE--------------
Confidence 44677899864 556666655 99999999999988875321 111 1234444332221
Q ss_pred CCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 222 VANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 222 ~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
..-.++.+-++|.+|.+.+.--.. .+ .+ ..++
T Consensus 102 ---------------------------------ltw~~~~v~v~D~~t~~~~~ti~~------------~~-eG--~glt 133 (262)
T 3nol_A 102 ---------------------------------LTWKNGLGFVWNIRNLRQVRSFNY------------DG-EG--WGLT 133 (262)
T ss_dssp ---------------------------------EESSSSEEEEEETTTCCEEEEEEC------------SS-CC--CCEE
T ss_pred ---------------------------------EEeeCCEEEEEECccCcEEEEEEC------------CC-Cc--eEEe
Confidence 112356777888888773310000 00 01 1234
Q ss_pred EcCCceEEEEcCCcEEEEECCCCceEEEE-ee-ccCC-eEEEEEEecCCEEEEEe-CCCccccCcceEEEEEcCCCeeEE
Q 046773 302 VTSHESAVACTSSRVITFDLRNQGMVLGE-RG-YGRG-LYVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVDTFEEVC 377 (453)
Q Consensus 302 ~s~~~~~vas~d~tIrlWDl~t~~~~~~~-~g-~~~~-~~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~tg~~v~ 377 (453)
.+++.++++..+++|.+.|.+|.+.+.+. .+ .+.. ...+.+.+.+..+.... .+. +|.+-|..+|+.+.
T Consensus 134 ~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~-------~I~vIDp~tG~V~~ 206 (262)
T 3nol_A 134 HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTN-------KIVRIDPETGKVTG 206 (262)
T ss_dssp ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSS-------EEEEECTTTCBEEE
T ss_pred cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCC-------eEEEEECCCCcEEE
Confidence 44544555544567999999988766553 21 1111 11233444444444443 344 88889999999888
Q ss_pred EEEecC------------CCeeEEEEeeCCCeEEEEe
Q 046773 378 RFSLRA------------DRNVNVMGCMNQGYALMCV 402 (453)
Q Consensus 378 ~l~~~~------------~~v~~~~~~~~~~~lls~s 402 (453)
.+.+.+ +-...++++++.+.+..++
T Consensus 207 ~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 207 IIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 887641 2245678888777666544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.011 Score=62.91 Aligned_cols=76 Identities=9% Similarity=0.052 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCce--EEEEecCCCEEE
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEE--VIAFVGDDRHVA 439 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~--V~a~s~d~~~la 439 (453)
..+.-||..||+.+-....... .........++.+..++. +.++.+|.+||+.+..++...+.. -..+..||+..+
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSC-CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceEEEEECCCCCEEEEecCCCC-CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 4788899999988766654321 111111224566666655 999999999999998886543320 113457887443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0061 Score=58.61 Aligned_cols=180 Identities=8% Similarity=-0.033 Sum_probs=104.0
Q ss_pred EEEEEEecCC-EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCc
Q 046773 146 TCRCLTLSDL-YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVAN 224 (453)
Q Consensus 146 ~v~~lafs~~-~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~ 224 (453)
+...|.|+++ +.+|.+.++.|++.|++||+.++++ - ....|+ .++++++++|..
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~Fg------eGit~~g~~Ly~----------------- 110 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFA------EGLASDGERLYQ----------------- 110 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCE------EEEEECSSCEEE-----------------
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcce------eEEEEeCCEEEE-----------------
Confidence 3578999875 6678888889999999999987776 2 111111 234444432221
Q ss_pred ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 225 ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 225 ~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
..-.++.+.++|.+|.+.+.- +.- ...-..++.++
T Consensus 111 ------------------------------ltw~~~~v~V~D~~Tl~~~~t--------------i~~-~~eGwGLt~Dg 145 (268)
T 3nok_A 111 ------------------------------LTWTEGLLFTWSGMPPQRERT--------------TRY-SGEGWGLCYWN 145 (268)
T ss_dssp ------------------------------EESSSCEEEEEETTTTEEEEE--------------EEC-SSCCCCEEEET
T ss_pred ------------------------------EEccCCEEEEEECCcCcEEEE--------------EeC-CCceeEEecCC
Confidence 112356677888888773310 000 00011234455
Q ss_pred CceEEEEcCCcEEEEECCCCceEEEE-e-eccCCe-EEEEEEecCCEEEEEe-CCCccccCcceEEEEEcCCCeeEEEEE
Q 046773 305 HESAVACTSSRVITFDLRNQGMVLGE-R-GYGRGL-YVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 305 ~~~~vas~d~tIrlWDl~t~~~~~~~-~-g~~~~~-~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~tg~~v~~l~ 380 (453)
+.++++..+++|.++|.+|.+.+.+. . .++... .++.+.+.+..+.... .+. .|.+-|..+|+.+..+.
T Consensus 146 ~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~-------~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 146 GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSS-------DVLEIDPATGTVVGVID 218 (268)
T ss_dssp TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCS-------EEEEECTTTCBEEEEEE
T ss_pred CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCC-------eEEEEeCCCCcEEEEEE
Confidence 55555555678999999998766553 2 111111 2344554444554443 344 88888999999888887
Q ss_pred ecC-------------CCeeEEEEeeCCCeEEEEe
Q 046773 381 LRA-------------DRNVNVMGCMNQGYALMCV 402 (453)
Q Consensus 381 ~~~-------------~~v~~~~~~~~~~~lls~s 402 (453)
+.+ +-...+++.++.+.+...+
T Consensus 219 l~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 219 ASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 641 2245677777666555443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.037 Score=59.25 Aligned_cols=75 Identities=8% Similarity=0.029 Sum_probs=46.6
Q ss_pred ceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCce--EEEEecCCCEE
Q 046773 363 RLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEE--VIAFVGDDRHV 438 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~--V~a~s~d~~~l 438 (453)
..+.-||..||+.+-........ .+-.....++.+..++. +.|+.+|.+||+.|..++-..+.. -..+..||+..
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERFAV-WGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESSCC-CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEECCCCCEEeEecCCCCc-cCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 47888899999887766432211 11111224566666655 999999999999998875433220 11345788743
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.01 Score=61.34 Aligned_cols=192 Identities=12% Similarity=0.118 Sum_probs=111.4
Q ss_pred CCCceeeEEEEeeCCCeEEEeeCCCC--c-EEecccccCCcceeeeeeee--------eeccceeEEEEcCCceEEEEc-
Q 046773 245 GCSRYWVGLYAGLAGRAFHIWDRQAE--E-VFVGGDLTDHNTVMGWRMLT--------EFTEFVGRVRVTSHESAVACT- 312 (453)
Q Consensus 245 ~dg~~~~~LaSgS~D~tIrvWD~~tg--~-~~~g~~l~~~~~v~~w~~l~--------~h~~~v~~v~~s~~~~~vas~- 312 (453)
+++++ .+++|-.+.+|.|.|+.+. + .+. +++. +.+ .--.+...|+++++++.
T Consensus 93 ~~r~~--l~v~~l~s~~I~viD~~t~p~~p~~~-------------k~ie~~~~~~~~g~s-~Ph~~~~~pdGi~Vs~~g 156 (462)
T 2ece_A 93 IERRF--LIVPGLRSSRIYIIDTKPNPREPKII-------------KVIEPEEVKKVSGYS-RLHTVHCGPDAIYISALG 156 (462)
T ss_dssp CCSCE--EEEEBTTTCCEEEEECCSCTTSCEEE-------------EEECHHHHHHHHCEE-EEEEEEECSSCEEEEEEE
T ss_pred ccCCE--EEEccCCCCeEEEEECCCCCCCceee-------------eeechhhcccccCCC-cccceeECCCeEEEEcCC
Confidence 66665 3567888999999999864 1 111 1110 111 11235567777666532
Q ss_pred C------CcEEEEECCCCceEEEE-eeccCC--eEEEEEEecCCEEEEEeC-------CC---cc--ccCcceEEEEEcC
Q 046773 313 S------SRVITFDLRNQGMVLGE-RGYGRG--LYVTSVDVNAEAYIVVEN-------RE---LE--NQNRRLAIVRRVD 371 (453)
Q Consensus 313 d------~tIrlWDl~t~~~~~~~-~g~~~~--~~v~~~~~~g~~l~s~s~-------dg---~~--~~~~~~i~Iw~~~ 371 (453)
+ +.|-+.|.+|.+.+.+. .+.... .+-.-++|+++.+++..- .| ++ .+...+|.+||++
T Consensus 157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp ETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred CcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 2 57999999998877664 221111 111345788887766531 00 00 0112389999999
Q ss_pred CCeeEEEEEecCC--CeeEEEE--eeCCCeEEE-Ee-----C-CeEEEEECCCCeE--EEEe--ccc--C----------
Q 046773 372 TFEEVCRFSLRAD--RNVNVMG--CMNQGYALM-CV-----E-GVIRVWEVEGGEY--MYSF--RER--I---------- 424 (453)
Q Consensus 372 tg~~v~~l~~~~~--~v~~~~~--~~~~~~lls-~s-----~-~tIrlWD~~tG~~--l~tL--~gh--~---------- 424 (453)
+++.+.++..... ..+.+.| +|++++... +. . ++|-+|....|+. ++++ ... .
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 9988888876422 2344444 778877653 44 4 7887766554432 1111 100 0
Q ss_pred ---CceEE--EEecCCCEEEEE--eCCcEEEEecC
Q 046773 425 ---GEEVI--AFVGDDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 425 ---~~~V~--a~s~d~~~lasg--~D~~IklWDl~ 452 (453)
+.... .+++||++|-.+ ..+.|.++|+.
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 01012 689999998544 67899999973
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.1 Score=49.36 Aligned_cols=182 Identities=12% Similarity=-0.037 Sum_probs=104.2
Q ss_pred eEEEEEEecCC-EEEEEeCC--CcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeec
Q 046773 145 LTCRCLTLSDL-YLACGFAD--GAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 145 v~v~~lafs~~-~LaSGS~D--~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~ 221 (453)
-+...|.|++. +..|.+.+ .+|+..|++||+.++++.-... .|| .++++++++|.-
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fg------eGi~~~~~~ly~-------------- 79 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFG------AGIVAWRDRLIQ-------------- 79 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCE------EEEEEETTEEEE--------------
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cce------eEEEEeCCEEEE--------------
Confidence 34678999986 44555554 5999999999999888753211 111 223333332211
Q ss_pred CCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 222 VANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 222 ~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
..-.++++.++|.+|.+.+.--.. + ..+ ..++
T Consensus 80 ---------------------------------ltw~~~~v~v~D~~tl~~~~ti~~--~--~~G-----------wglt 111 (243)
T 3mbr_X 80 ---------------------------------LTWRNHEGFVYDLATLTPRARFRY--P--GEG-----------WALT 111 (243)
T ss_dssp ---------------------------------EESSSSEEEEEETTTTEEEEEEEC--S--SCC-----------CEEE
T ss_pred ---------------------------------EEeeCCEEEEEECCcCcEEEEEeC--C--CCc-----------eEEe
Confidence 112356778888888773310000 0 011 1233
Q ss_pred EcCCceEEEEcCCcEEEEECCCCceEEEE-ee-ccCC-eEEEEEEecCCEEEEEe-CCCccccCcceEEEEEcCCCeeEE
Q 046773 302 VTSHESAVACTSSRVITFDLRNQGMVLGE-RG-YGRG-LYVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVDTFEEVC 377 (453)
Q Consensus 302 ~s~~~~~vas~d~tIrlWDl~t~~~~~~~-~g-~~~~-~~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~tg~~v~ 377 (453)
.+++.++++..+++|.++|.+|.+.+.+. .+ ++.. ..++.+.+.+..+.... .+. .|.+-|..+|+.+.
T Consensus 112 ~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~-------~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 112 SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTS-------RIARIDPASGKVVA 184 (243)
T ss_dssp ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTT-------EEEEECTTTCBEEE
T ss_pred eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCC-------eEEEEECCCCCEEE
Confidence 44555666555678999999998766553 21 1111 12345555555555444 344 88889999999888
Q ss_pred EEEecC-------------CCeeEEEEeeCCCeEEEEe
Q 046773 378 RFSLRA-------------DRNVNVMGCMNQGYALMCV 402 (453)
Q Consensus 378 ~l~~~~-------------~~v~~~~~~~~~~~lls~s 402 (453)
.+.+.+ +-...++..++.+.+...+
T Consensus 185 ~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 185 WIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 887542 1234567777666665444
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.028 Score=61.52 Aligned_cols=236 Identities=6% Similarity=-0.029 Sum_probs=117.8
Q ss_pred EEEEEEec-C--CEEEEEe-----CCCcEEEEECCCC-eEEE-EecCCCCCccccccceEEEEE--EcCCeEEEEeCCC-
Q 046773 146 TCRCLTLS-D--LYLACGF-----ADGAVRLFDLTTR-LHVR-TFRPQHSDRLGQFSRAVSGII--ITDSQLIFATLDG- 212 (453)
Q Consensus 146 ~v~~lafs-~--~~LaSGS-----~D~TIrlWD~~tg-~~~~-tl~gh~~~~~~~~s~~V~~i~--f~g~~LasgS~D~- 212 (453)
.+...+|| + ++||-++ ...+|+++|+.+| +.+. .+.. ...+++ .||+.|+..+.|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~-----------~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG-----------TNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE-----------ECSCCEECSSTTEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC-----------ceeeEEEecCCCEEEEEEECCC
Confidence 36678888 6 5676332 2246999999999 6321 1111 011233 4677888888763
Q ss_pred ----CEEEEEeecCCc-c-eEEee-e-cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcc
Q 046773 213 ----DIHVAVIDDVAN-E-TRTAH-F-GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNT 283 (453)
Q Consensus 213 ----tIkvWd~~~~g~-~-~~~~~-~-~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~ 283 (453)
.|.++++.+ +. . .+... . ... ...+.+||||++++..........|.++|+.++. .+.
T Consensus 244 ~~~~~v~~~~lgt-~~~~~~lv~~~~~~~~---~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~--------- 310 (751)
T 2xe4_A 244 LRENKVWRHVMGK-LQSEDVCLYEEHNPLF---SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT--------- 310 (751)
T ss_dssp CCEEEEEEEETTS-CGGGCEEEEECCCTTC---EEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC---------
T ss_pred CCCCEEEEEECCC-CchhcEEEEecCCCce---EEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce---------
Confidence 355555554 21 1 11111 1 111 1247899999985422221234568888998762 110
Q ss_pred eeeeeee-eeeccceeEEEEc-CCceEEEEcC-----CcEEEEECCCCceEEE-EeeccCCeEEEEEEecCCEEEE-EeC
Q 046773 284 VMGWRML-TEFTEFVGRVRVT-SHESAVACTS-----SRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEAYIV-VEN 354 (453)
Q Consensus 284 v~~w~~l-~~h~~~v~~v~~s-~~~~~vas~d-----~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~l~s-~s~ 354 (453)
...+ ....+...++.++ ++.++..+.. ..|.++|+.+++.... +..+.....+..+++.++.++. ...
T Consensus 311 ---~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~ 387 (751)
T 2xe4_A 311 ---LEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRR 387 (751)
T ss_dssp ---EEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEE
T ss_pred ---eEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEe
Confidence 0001 1122334444432 4445555542 2466778875322122 2223334456778888877654 444
Q ss_pred CCccccCcceEEEE--Ec-------CCCeeEEEEEecCCCeeEEEE------eeCCCeEE-EEeC----CeEEEEECCCC
Q 046773 355 RELENQNRRLAIVR--RV-------DTFEEVCRFSLRADRNVNVMG------CMNQGYAL-MCVE----GVIRVWEVEGG 414 (453)
Q Consensus 355 dg~~~~~~~~i~Iw--~~-------~tg~~v~~l~~~~~~v~~~~~------~~~~~~ll-s~s~----~tIrlWD~~tG 414 (453)
++ ..+|+ +. ++++.+..+.+... .....+ ..++..++ +.++ .++.+.|+.+|
T Consensus 388 ~g-------~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 388 AG-------LTRIWTMMADSQDGVFKAGTGLREVVMEEP-IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp TT-------EEEEEEEECCTTTSCCCTTTCCEECCCCCS-SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred CC-------EEEEEEEecccccccccCCccceEECCCCc-eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 55 44554 43 33331344433221 112222 23444443 3333 68888899887
Q ss_pred eE
Q 046773 415 EY 416 (453)
Q Consensus 415 ~~ 416 (453)
+.
T Consensus 460 ~~ 461 (751)
T 2xe4_A 460 SR 461 (751)
T ss_dssp CE
T ss_pred cE
Confidence 53
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.021 Score=60.92 Aligned_cols=243 Identities=9% Similarity=0.052 Sum_probs=128.3
Q ss_pred EEEe-----cCC-EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE----cCCeEEEEe---------
Q 046773 149 CLTL-----SDL-YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII----TDSQLIFAT--------- 209 (453)
Q Consensus 149 ~laf-----s~~-~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f----~g~~LasgS--------- 209 (453)
.+.| +++ ..++...+.+|-+-|+.+.+|.+.+.-... ....++++ ++.++..++
T Consensus 91 ~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-------~~phg~~~~~~p~~~~v~~~~~~~~p~~~d 163 (595)
T 1fwx_A 91 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-------KGIHGLRPQKWPRSNYVFCNGEDETPLVND 163 (595)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-------CSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred ccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-------CCCcceeeeecCCCcEEEEecccccccCCC
Confidence 4666 555 455677778899999999999995531111 12344554 456665553
Q ss_pred ---------CCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCC---------------eEEEe
Q 046773 210 ---------LDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGR---------------AFHIW 265 (453)
Q Consensus 210 ---------~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~---------------tIrvW 265 (453)
.++++-+.|.++ ..-..+.-.+. .. ..++++|||++ +++.+.+. .|.|-
T Consensus 164 g~~l~~~~~~~~~vtvID~~t-~~v~~qI~Vgg-~p--d~~~~spdGk~---~~vt~~~se~~~~i~~~~~~~~d~v~V~ 236 (595)
T 1fwx_A 164 GTNMEDVANYVNVFTAVDADK-WEVAWQVLVSG-NL--DNCDADYEGKW---AFSTSYNSEKGMTLPEMTAAEMDHIVVF 236 (595)
T ss_dssp SSSTTCGGGEEEEEEEEETTT-TEEEEEEEESS-CC--CCEEECSSSSE---EEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred CcccccccccCceEEEEECCC-CeEEEEEEeCC-Cc--cceEECCCCCE---EEEEecCcccCcchhhccccccceEEEe
Confidence 233555666554 21111111111 11 23789999998 45555432 24444
Q ss_pred eCCCCc--------EEecc-cccCCcc--eee-eeeeeeeccceeEEEEcCCce-EEEEc--CCcEEEEECCCCc-----
Q 046773 266 DRQAEE--------VFVGG-DLTDHNT--VMG-WRMLTEFTEFVGRVRVTSHES-AVACT--SSRVITFDLRNQG----- 325 (453)
Q Consensus 266 D~~tg~--------~~~g~-~l~~~~~--v~~-w~~l~~h~~~v~~v~~s~~~~-~vas~--d~tIrlWDl~t~~----- 325 (453)
|..+.+ ...+. ++-|... -.- ..++.. .....+|.++|++. +.+++ +.+|-+.|+++.+
T Consensus 237 ~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~ 315 (595)
T 1fwx_A 237 NIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE 315 (595)
T ss_dssp EHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS
T ss_pred eccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc
Confidence 433221 00000 0000000 000 001110 01224588999885 33343 4789999999652
Q ss_pred ------eEEEE--eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC----------CeeEEEEEecCC-Ce
Q 046773 326 ------MVLGE--RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT----------FEEVCRFSLRAD-RN 386 (453)
Q Consensus 326 ------~~~~~--~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t----------g~~v~~l~~~~~-~v 386 (453)
++... .|. +-.=.+|+++|..+++.-.|+ ++.+|++++ .+.+.++..+-. +.
T Consensus 316 ~l~~~~~v~~~v~vG~--gP~h~aF~~dG~aY~t~~lds-------qV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh 386 (595)
T 1fwx_A 316 NADPRSAVVAEPELGL--GPLHTAFDGRGNAYTSLFLDS-------QVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH 386 (595)
T ss_dssp CCCGGGGEEECCBCCS--CEEEEEECTTSEEEEEETTTT-------EEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE
T ss_pred ccCcccceEEEcCCCC--CcceEEECCCCeEEEEEecCC-------cEEEEEhhHhhhhhcccccceeEEEeeccccccc
Confidence 12222 222 223367888885556666677 999999887 456677766532 11
Q ss_pred eE----EEEeeCCCeEEEEeC---CeE-----------EEEECCCCe
Q 046773 387 VN----VMGCMNQGYALMCVE---GVI-----------RVWEVEGGE 415 (453)
Q Consensus 387 ~~----~~~~~~~~~lls~s~---~tI-----------rlWD~~tG~ 415 (453)
.. ...++||++++++.. ..+ .|.|+.+++
T Consensus 387 ~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 387 LKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 11 133578999887643 233 889996654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.1 Score=55.93 Aligned_cols=108 Identities=7% Similarity=-0.054 Sum_probs=60.5
Q ss_pred cCCEEEEEeCCC-----------cEEEEECCCCeEEE--EecCCCCCccccccceEEEEEEcCCeEEEEeC-CCCEEEEE
Q 046773 153 SDLYLACGFADG-----------AVRLFDLTTRLHVR--TFRPQHSDRLGQFSRAVSGIIITDSQLIFATL-DGDIHVAV 218 (453)
Q Consensus 153 s~~~LaSGS~D~-----------TIrlWD~~tg~~~~--tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~-D~tIkvWd 218 (453)
++++++.|+.+. .+.+||+.+++... .+...+. . +... .++..++..+++|+. +.++.+||
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~-~---~~~~-~~~~~~g~lyv~GG~~~~~v~~yd 271 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD-M---FCPG-ISMDGNGQIVVTGGNDAKKTSLYD 271 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC-C---SSCE-EEECTTSCEEEECSSSTTCEEEEE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC-C---cccc-ccCCCCCCEEEeCCCCCCceEEec
Confidence 557888887654 68999999997432 2211111 0 0001 112346888899885 55789998
Q ss_pred eecCCcceEE-eeecceecCceEEEEeCCCceeeEEEEee-CC-----CeEEEeeCCCCc
Q 046773 219 IDDVANETRT-AHFGSVMDDGVLIDFTGCSRYWVGLYAGL-AG-----RAFHIWDRQAEE 271 (453)
Q Consensus 219 ~~~~g~~~~~-~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D-----~tIrvWD~~tg~ 271 (453)
..+....... .+.. .....+++.++|+. ++.|+ .+ .++.+||.++++
T Consensus 272 ~~t~~W~~~~~~~~~---R~~~s~~~~~dg~i---yv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 272 SSSDSWIPGPDMQVA---RGYQSSATMSDGRV---FTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp GGGTEEEECCCCSSC---CSSCEEEECTTSCE---EEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CcCCceeECCCCCcc---ccccceEEecCCeE---EEEeCcccCCcccccceEeCCCCCc
Confidence 7651111110 0000 01123455567775 44555 44 679999999887
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.041 Score=60.26 Aligned_cols=188 Identities=4% Similarity=-0.105 Sum_probs=99.3
Q ss_pred EEEe-CCCceeeEEEE--eeCCCeEEEeeCCCC-cEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcC-
Q 046773 241 IDFT-GCSRYWVGLYA--GLAGRAFHIWDRQAE-EVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTS- 313 (453)
Q Consensus 241 v~Fs-~dg~~~~~LaS--gS~D~tIrvWD~~tg-~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d- 313 (453)
..|| |||++++...+ |+...+|+|+|+++| +.+. . .+.. ....+.++|++ ++..+.+
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------~------~~~~---~~~~~~WspDg~~l~y~~~d~ 242 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------D------KVSG---TNGEIVWGPDHTSLFYVTKDE 242 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-------C------CEEE---ECSCCEECSSTTEEEEEEECT
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-------c------cccC---ceeeEEEecCCCEEEEEEECC
Confidence 6899 99997432222 233357999999999 6321 0 0111 12356788776 3444443
Q ss_pred ----CcEEEEECCCCce--EEEEe-eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe-eE--EEEEecC
Q 046773 314 ----SRVITFDLRNQGM--VLGER-GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE-EV--CRFSLRA 383 (453)
Q Consensus 314 ----~tIrlWDl~t~~~--~~~~~-g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~-~v--~~l~~~~ 383 (453)
..|.++++.+++. .+... ....-..-..++++|+.++..+.+. ....+.++++++++ .. ..+....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~~~l~~~~ 318 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP----ETAEVHLLDLRKGNAHNTLEIVRPRE 318 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS----SCEEEEEEESSSCTTCCCEEESSCCC
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC----CCceEEEEECCCCCCCceeEEeecCC
Confidence 2588899988642 12211 1111222346788898887766443 12256677777652 22 3332222
Q ss_pred CC-eeEEEEeeCCCeEEEEeC------CeEEEEECCCCeEEEE-ecccC-CceEEEEecCCCEEE-EE-eCCcEEEE
Q 046773 384 DR-NVNVMGCMNQGYALMCVE------GVIRVWEVEGGEYMYS-FRERI-GEEVIAFVGDDRHVA-AS-CGTNIHLW 449 (453)
Q Consensus 384 ~~-v~~~~~~~~~~~lls~s~------~tIrlWD~~tG~~l~t-L~gh~-~~~V~a~s~d~~~la-sg-~D~~IklW 449 (453)
.. ..+..+ .+++.++..+. ..|.++|+.++..... +-.|. +..+..+++++..|+ +. .|+..+||
T Consensus 319 ~~~~~s~~~-~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 319 KGVRYDVQM-HGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp TTCCEEEEE-ETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred CCceEEEee-eeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEE
Confidence 21 122111 23676655432 3677778876433233 32233 323557777776654 55 78866555
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.13 Score=55.16 Aligned_cols=235 Identities=9% Similarity=-0.060 Sum_probs=113.3
Q ss_pred cCCeEEEEeCCC-----------CEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCC
Q 046773 201 TDSQLIFATLDG-----------DIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQ 268 (453)
Q Consensus 201 ~g~~LasgS~D~-----------tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~ 268 (453)
++..++.|+.+. .+.+||..+.....+.........-...+++.++|+. ++.|+ .+.++.+||..
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~l---yv~GG~~~~~v~~yd~~ 273 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQI---VVTGGNDAKKTSLYDSS 273 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCE---EEECSSSTTCEEEEEGG
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCE---EEeCCCCCCceEEecCc
Confidence 677788887654 4677887662122211100000000113567788885 45665 56689999999
Q ss_pred CCcEEecccccCCcceeeeeeeeeeccceeEEEEc-CCceEEEEc--C-----CcEEEEECCCCceEEEE-e--e--ccC
Q 046773 269 AEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT-SHESAVACT--S-----SRVITFDLRNQGMVLGE-R--G--YGR 335 (453)
Q Consensus 269 tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s-~~~~~vas~--d-----~tIrlWDl~t~~~~~~~-~--g--~~~ 335 (453)
+++-.....++.+ ... .++.+. .+.+++.++ + .++.+||+.++...... . . ...
T Consensus 274 t~~W~~~~~~~~~------------R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~ 340 (656)
T 1k3i_A 274 SDSWIPGPDMQVA------------RGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA 340 (656)
T ss_dssp GTEEEECCCCSSC------------CSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCC
T ss_pred CCceeECCCCCcc------------ccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccc
Confidence 8872211111111 011 122333 233433332 2 46999999987533210 0 0 000
Q ss_pred CeEEEEEEecCCEEEEEeCCCccc--cCcceEEEEEcCCCeeEEEEEecCC---------CeeEEEEeeCCCeEEEEeC-
Q 046773 336 GLYVTSVDVNAEAYIVVENRELEN--QNRRLAIVRRVDTFEEVCRFSLRAD---------RNVNVMGCMNQGYALMCVE- 403 (453)
Q Consensus 336 ~~~v~~~~~~g~~l~s~s~dg~~~--~~~~~i~Iw~~~tg~~v~~l~~~~~---------~v~~~~~~~~~~~lls~s~- 403 (453)
.. ...+..++..++.+..++... ....++..+|..+.+....+...+. ....+++...++.++.+++
T Consensus 341 ~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 341 DK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp CT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred cc-cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 00 001112334445554443100 0122677888877654433322211 1222333333445554432
Q ss_pred ---------C---eEEEEECCCCeEEEEe--cccCCc-e-EEEEecCCCEEEEE-eC-----------CcEEEEecC
Q 046773 404 ---------G---VIRVWEVEGGEYMYSF--RERIGE-E-VIAFVGDDRHVAAS-CG-----------TNIHLWDFG 452 (453)
Q Consensus 404 ---------~---tIrlWD~~tG~~l~tL--~gh~~~-~-V~a~s~d~~~lasg-~D-----------~~IklWDl~ 452 (453)
. .|.+||.++.+..... .-+... . ...+.||+++++.| .+ ..+.+||..
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence 1 7899999988765443 222222 0 11445799998887 54 468888853
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.28 Score=47.01 Aligned_cols=192 Identities=10% Similarity=0.044 Sum_probs=96.7
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcE--Eeccc-ccC---CcceeeeeeeeeeccceeEEEEcC-Cc-eEEEEc
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEV--FVGGD-LTD---HNTVMGWRMLTEFTEFVGRVRVTS-HE-SAVACT 312 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~--~~g~~-l~~---~~~v~~w~~l~~h~~~v~~v~~s~-~~-~~vas~ 312 (453)
++++++|+. |+++..++.|..||..+++. +.... ... ....... ...........+++++ ++ ++++..
T Consensus 24 i~~d~~g~~---l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 24 FTFDSTNKG---FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA-EKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp EECCTTCSS---EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCG-GGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred EEEcCCCCE---EEEEcCCCeEEEECCCCCceEEEecccccccccccccccch-hccccCCCCceEEEcCCCCcEEEEEC
Confidence 788899874 56778889999999887652 21000 000 0000000 0000112456788886 54 556555
Q ss_pred CCcEEEEECCCCceEEEE--eecc---CCeEEEEEEe-cCCEEEEEeCCCc----------cccCcceEEEEEcCCCeeE
Q 046773 313 SSRVITFDLRNQGMVLGE--RGYG---RGLYVTSVDV-NAEAYIVVENREL----------ENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 313 d~tIrlWDl~t~~~~~~~--~g~~---~~~~v~~~~~-~g~~l~s~s~dg~----------~~~~~~~i~Iw~~~tg~~v 376 (453)
...|..+|+.++.. ..+ .... ....-.++++ +|+.+++-+...- .......+..++.++++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 56688899886532 111 1110 1112244566 6766665432100 0001124556666666532
Q ss_pred EEEEecCCCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCC---e--EEEEecccCCceEEEEecCCCEEEEE
Q 046773 377 CRFSLRADRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGG---E--YMYSFRERIGEEVIAFVGDDRHVAAS 441 (453)
Q Consensus 377 ~~l~~~~~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG---~--~l~tL~gh~~~~V~a~s~d~~~lasg 441 (453)
.... .......++++++++++..+. . +.|.++|+.+. + .+..+.+ .+. .++.++|++.++.
T Consensus 179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~g--i~~d~~G~l~va~ 246 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGN--IKRNADGHFWVSS 246 (322)
T ss_dssp EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEE--EEECTTSCEEEEE
T ss_pred Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCC--eEECCCCCEEEEe
Confidence 2111 111234577888887666553 3 89999998752 2 2222333 111 1566788766654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.53 Score=44.88 Aligned_cols=181 Identities=7% Similarity=-0.099 Sum_probs=92.7
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEEcC-Cc--
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVACTS-SR-- 315 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas~d-~t-- 315 (453)
.++++++|+. +++-..++.|..+|.+++.... + ........+++++++. +++... ..
T Consensus 36 gia~~~~g~l---yv~d~~~~~I~~~d~~g~~~~~------------~----~~~~~p~gia~~~dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 36 NLASAPDGTI---FVTNHEVGEIVSITPDGNQQIH------------A----TVEGKVSGLAFTSNGDLVATGWNADSIP 96 (306)
T ss_dssp EEEECTTSCE---EEEETTTTEEEEECTTCCEEEE------------E----ECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred eEEECCCCCE---EEEeCCCCeEEEECCCCceEEE------------E----eCCCCceeEEEcCCCcEEEEeccCCcce
Confidence 3788999874 3454567889999987654210 0 1113467788987764 444422 23
Q ss_pred EEEEECCCCceEEEEe-eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe-eEEEEEe-----c--C--C
Q 046773 316 VITFDLRNQGMVLGER-GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE-EVCRFSL-----R--A--D 384 (453)
Q Consensus 316 IrlWDl~t~~~~~~~~-g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~-~v~~l~~-----~--~--~ 384 (453)
|..+|..+++...... .......-.++...+..+++-+..+ .+.+.+..+++ .+..... . . .
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g-------~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRG-------AIWLIDVVQPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTT-------EEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCC-------eEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence 6667888775432111 1111111112222222333333345 44455554432 1211110 0 0 1
Q ss_pred CeeEEEEeeCCCeEEEEeC--CeEEEEECCC-CeE-----EEEecccCCceEEEEecCCCEEEEE-eCCcEEEEec
Q 046773 385 RNVNVMGCMNQGYALMCVE--GVIRVWEVEG-GEY-----MYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~--~tIrlWD~~t-G~~-----l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl 451 (453)
....+ +++++++..+.. +.|..+|+.. |+. +..+ ...+. .++.+||+..++. ..+.|.++|.
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~g--i~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDD--FAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSS--EEEBTTCCEEEECBTTCCEEEECT
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCC--eEECCCCCEEEEeCCCCeEEEECC
Confidence 12233 677777766554 8999999875 431 1122 12222 1667888876665 5677877763
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=1.2 Score=48.36 Aligned_cols=279 Identities=8% Similarity=-0.022 Sum_probs=153.0
Q ss_pred EEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC-eEEEEeCCCCEEEEEeecCCc
Q 046773 147 CRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS-QLIFATLDGDIHVAVIDDVAN 224 (453)
Q Consensus 147 v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~-~LasgS~D~tIkvWd~~~~g~ 224 (453)
|+|+..+. ..|--|+.+ .|.++|..+++..+.... .....+.....|.+|..|.+ .|-.|+.++-|..++..+...
T Consensus 265 i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~ 342 (795)
T 4a2l_A 265 IRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSN-PVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF 342 (795)
T ss_dssp EEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCC-TTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSS
T ss_pred EEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecC-CCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc
Confidence 78898874 344455655 799999999876543221 11001111236888888743 466788878888887654111
Q ss_pred ceEEee--ecceecCce-EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE-ecccccCCcceeeeeeeeeeccceeEE
Q 046773 225 ETRTAH--FGSVMDDGV-LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF-VGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 225 ~~~~~~--~~~v~~~~~-~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~-~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
..+... ......+.+ .+..+++|..| .|+.++-|..+|..+++.. ......++. ..+ ....|.++
T Consensus 343 ~~~~~~~~~~~l~~~~V~~i~~d~~g~lW----iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~-----~~l--~~~~v~~i 411 (795)
T 4a2l_A 343 KNIRNIPYKNSLSDNVVSCIVEDKDKNLW----IGTNDGGLNLYNPITQRFTSYTLQEDESA-----RGI--GSNNIKAV 411 (795)
T ss_dssp EEECCCTTSSSCSCSSEEEEEECTTSCEE----EEESSSCEEEECTTTCCEEEECCC-----------CC--SCSCEEEE
T ss_pred eEEcCCCCCCCCCCCeeEEEEECCCCCEE----EEECCCCeEEEcCCCCcEEEEecCCCCcc-----cCC--CCccEEEE
Confidence 211110 011111222 36677888855 4788878999999887621 100000000 000 12457888
Q ss_pred EEcCCc--eEEEEcCCcEEEEECCCCceEEEEe--eccCCeEEEEEEecC-CEEEEEeCCCccccCcceEEEEEcCCCee
Q 046773 301 RVTSHE--SAVACTSSRVITFDLRNQGMVLGER--GYGRGLYVTSVDVNA-EAYIVVENRELENQNRRLAIVRRVDTFEE 375 (453)
Q Consensus 301 ~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~--g~~~~~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~ 375 (453)
..++++ +.+++.++.+.++|.++++...-.. .......|.++..+. ..+-.++..| +.+++..+++.
T Consensus 412 ~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~G--------l~~~~~~~~~~ 483 (795)
T 4a2l_A 412 YVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSA--------LVRFNPEQRSF 483 (795)
T ss_dssp EEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSC--------EEEEETTTTEE
T ss_pred EEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCc--------eeEEeCCCCeE
Confidence 877555 6777776789999999876432211 001123456665543 2344455544 55677766543
Q ss_pred EEEEE------ecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEec-------ccCCceEEEEe--cCCCEEEE
Q 046773 376 VCRFS------LRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFR-------ERIGEEVIAFV--GDDRHVAA 440 (453)
Q Consensus 376 v~~l~------~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~-------gh~~~~V~a~s--~d~~~las 440 (453)
..... +....+..+....++...+.+. +-|.+||..+++. .+. .+... |.++. ++|++.++
T Consensus 484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~-i~~i~~d~~g~lWig 559 (795)
T 4a2l_A 484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLF-TNCIYEASNGIIWVG 559 (795)
T ss_dssp EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSC-EEEEEECTTSCEEEE
T ss_pred EEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCe-eEEEEECCCCCEEEE
Confidence 22111 1124466666666666655444 5688899988876 222 12334 77664 56775554
Q ss_pred EeCCcEEEEec
Q 046773 441 SCGTNIHLWDF 451 (453)
Q Consensus 441 g~D~~IklWDl 451 (453)
... .|..||.
T Consensus 560 T~~-Gl~~~d~ 569 (795)
T 4a2l_A 560 TRE-GFYCFNE 569 (795)
T ss_dssp ESS-CEEEEET
T ss_pred eCC-CceeECC
Confidence 433 5556653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.85 Score=43.52 Aligned_cols=228 Identities=8% Similarity=-0.030 Sum_probs=121.7
Q ss_pred EEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeee---------c-------ceecCceEEEEeC-CCceeeEEEEeeC
Q 046773 198 IIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHF---------G-------SVMDDGVLIDFTG-CSRYWVGLYAGLA 258 (453)
Q Consensus 198 i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~---------~-------~v~~~~~~v~Fs~-dg~~~~~LaSgS~ 258 (453)
++++ ++.+.++..++.|..|+.++.....+.... + ........++|++ +|+. +.+..
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l----~v~d~ 99 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL----YIVDC 99 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE----EEEET
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcE----EEEEC
Confidence 5554 455777778888888876651122221100 0 0001122478997 7764 44555
Q ss_pred CCeEEEeeCCCCc--EEecccccCCcceeeeeeeee-eccceeEEEEcC-Cce-EEEEcC------------------Cc
Q 046773 259 GRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTE-FTEFVGRVRVTS-HES-AVACTS------------------SR 315 (453)
Q Consensus 259 D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~-h~~~v~~v~~s~-~~~-~vas~d------------------~t 315 (453)
.+.|.++|..+++ .+.. ...+ .....+.+++++ ++. .++... +.
T Consensus 100 ~~~i~~~d~~~g~~~~~~~-------------~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLAT-------------SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp TTEEEEECTTCEECEEEES-------------EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred CCCEEEEeCCCCEEEEecc-------------cCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 5668888988775 2210 0000 012456788888 664 444322 45
Q ss_pred EEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEE-eCCCccccCcceEEEEEcCCCe--eEEEEEecCCCeeEEEEe
Q 046773 316 VITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVV-ENRELENQNRRLAIVRRVDTFE--EVCRFSLRADRNVNVMGC 392 (453)
Q Consensus 316 IrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~-s~dg~~~~~~~~i~Iw~~~tg~--~v~~l~~~~~~v~~~~~~ 392 (453)
|..+|..+++......+-... .-.+++++++.+..+ +..+ .|.+++.+... ....+...+. ...++..
T Consensus 167 v~~~d~~~~~~~~~~~~~~~p-~gia~~~dg~~lyv~d~~~~-------~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d 237 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKELHVP-GGAEVSADSSFVLVAEFLSH-------QIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237 (322)
T ss_dssp EEEEETTTTEEEEEEEEESCC-CEEEECTTSSEEEEEEGGGT-------EEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred EEEEeCCCCEEEEeccCCccC-cceEECCCCCEEEEEeCCCC-------eEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence 888898876532221110111 114677777755444 4445 77777776421 1222221122 4566777
Q ss_pred eCCCeEEEEeC-----------CeEEEEECCCCeEEEEecccCC---ceEEEEe-cCCCEEEEE-eCCcEEEEecC
Q 046773 393 MNQGYALMCVE-----------GVIRVWEVEGGEYMYSFRERIG---EEVIAFV-GDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 393 ~~~~~lls~s~-----------~tIrlWD~~tG~~l~tL~gh~~---~~V~a~s-~d~~~lasg-~D~~IklWDl~ 452 (453)
+++...++... +.|...|. .|+.+..+....+ ..+..+. .+++..++. ..+.|..+++.
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 77776665432 56777887 4887777754322 1133332 456555666 77888888764
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=1.8 Score=47.02 Aligned_cols=277 Identities=9% Similarity=0.042 Sum_probs=152.4
Q ss_pred EEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC-CeEEEEeCCCCEEEEEeecCC-
Q 046773 147 CRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD-SQLIFATLDGDIHVAVIDDVA- 223 (453)
Q Consensus 147 v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g-~~LasgS~D~tIkvWd~~~~g- 223 (453)
|.++..+. ..|--|+.++-|.+||..+++.......... ........|.+|..+. ..|..|+.+ -|.++|..+ +
T Consensus 217 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~-~~ 293 (795)
T 4a2l_A 217 IQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSN-PKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGT-DS 293 (795)
T ss_dssp EEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTC-TTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTT-TE
T ss_pred eEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCC-ccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCC-Ce
Confidence 67777653 3455566666699999999876543221100 0001123588888873 345556655 677787654 2
Q ss_pred cceEEee---ecceecCce-EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc--EEecccccCCcceeeeeeeeeeccce
Q 046773 224 NETRTAH---FGSVMDDGV-LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 224 ~~~~~~~---~~~v~~~~~-~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
...+... ......+.+ .+..+++|..| .|+.++-|..+|..+++ .+.. . ..++ .| ....|
T Consensus 294 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW----igt~~~Gl~~~~~~~~~~~~~~~-~-~~~~------~l--~~~~V 359 (795)
T 4a2l_A 294 FASYSSNPVENGSLSQRSVRSIFMDSQGGMW----LGTYFGGLNYYHPIRNRFKNIRN-I-PYKN------SL--SDNVV 359 (795)
T ss_dssp EEEECCCTTSTTSCSSSCEEEEEECTTSCEE----EEESSSCEEEECGGGGSSEEECC-C-TTSS------SC--SCSSE
T ss_pred EEEEecCCCCCCCCCCCcEEEEEEeCCcCEE----EEECCCCeEEeCCCcccceEEcC-C-CCCC------CC--CCCee
Confidence 1111100 011111222 37778888865 57788889999987765 2210 0 0000 01 12458
Q ss_pred eEEEEcCCc-eEEEEcCCcEEEEECCCCceEEEEeec------cCCeEEEEEEe--cCCEEEEEeCCCccccCcceEEEE
Q 046773 298 GRVRVTSHE-SAVACTSSRVITFDLRNQGMVLGERGY------GRGLYVTSVDV--NAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 298 ~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~~~~g~------~~~~~v~~~~~--~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
.++..++++ +.+++.++-|..||..++......... -....|.++.. +++.+-.++.++ -+.++
T Consensus 360 ~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~-------Gl~~~ 432 (795)
T 4a2l_A 360 SCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAG-------GLSIL 432 (795)
T ss_dssp EEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTT-------EEEEE
T ss_pred EEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcC-------ceeEE
Confidence 888888665 566666678999999887543321110 01233556544 444266677666 56777
Q ss_pred EcCCCeeEEEEE-----ecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecc------cCCceEEEEe--cCC
Q 046773 369 RVDTFEEVCRFS-----LRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRE------RIGEEVIAFV--GDD 435 (453)
Q Consensus 369 ~~~tg~~v~~l~-----~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~g------h~~~~V~a~s--~d~ 435 (453)
+..+++. ..+. +....+..+....++...+.+. +-|.++|.++++....... .... |.++. +++
T Consensus 433 d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~d~~g 509 (795)
T 4a2l_A 433 HRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQ-ITTLFRDSHK 509 (795)
T ss_dssp ETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCC-EEEEEECTTC
T ss_pred eCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCce-EEEEEECCCC
Confidence 7777653 2232 1234466776666666555443 5588899998876433211 1234 77654 566
Q ss_pred CEEEEEeCCcEEEEec
Q 046773 436 RHVAASCGTNIHLWDF 451 (453)
Q Consensus 436 ~~lasg~D~~IklWDl 451 (453)
+..++.. +.|..||.
T Consensus 510 ~lWigt~-~Gl~~~~~ 524 (795)
T 4a2l_A 510 RLWIGGE-EGLSVFKQ 524 (795)
T ss_dssp CEEEEES-SCEEEEEE
T ss_pred CEEEEeC-CceEEEeC
Confidence 6555434 45666654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.82 Score=42.28 Aligned_cols=195 Identities=9% Similarity=-0.039 Sum_probs=105.3
Q ss_pred EEEEEEc--CCeEEEE-eCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 195 VSGIIIT--DSQLIFA-TLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 195 V~~i~f~--g~~Lasg-S~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
..+++++ +..|..+ ...+.|.+.+.++ + .......... .....++|+|++..+ .++-...+.|.+.|.....
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~-~~~~~~~~~~-~~p~~ia~d~~~~~l--yv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHG-G-EPTTIIRQDL-GSPEGIALDHLGRTI--FWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSS-C-CCEEEECTTC-CCEEEEEEETTTTEE--EEEETTTTEEEEEETTSCS
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCC-C-CcEEEEECCC-CCccEEEEEecCCeE--EEEECCCCEEEEEEcCCCC
Confidence 4567776 3455544 4467788888765 2 1111111110 112348899976541 3344566789999986543
Q ss_pred --EEecccccCCcceeeeeeeeeeccceeEEEEcC-Cc-eEEEEcC---CcEEEEECCCCceEEEE-eeccCCeEEEEEE
Q 046773 272 --VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS-HE-SAVACTS---SRVITFDLRNQGMVLGE-RGYGRGLYVTSVD 343 (453)
Q Consensus 272 --~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~-~~-~~vas~d---~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~ 343 (453)
.+.. .+. ...+.++++| ++ +.++... +.|...++.... .... ......-.-.+++
T Consensus 113 ~~~~~~---------------~~~-~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d 175 (267)
T 1npe_A 113 RRVLFD---------------TGL-VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFD 175 (267)
T ss_dssp CEEEEC---------------SSC-SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEE
T ss_pred EEEEEE---------------CCC-CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEc
Confidence 2110 011 2346788887 34 4555432 578888886432 1111 1111112224566
Q ss_pred ecCCEEEEEe-CCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEe
Q 046773 344 VNAEAYIVVE-NRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSF 420 (453)
Q Consensus 344 ~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL 420 (453)
++++.+..+. ..+ .|.+.+.+.......+. ....-..+ +++++++..+.. +.|.+.|..+|+.+.++
T Consensus 176 ~~~~~lyv~d~~~~-------~I~~~~~~g~~~~~~~~-~~~~P~gi--~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 176 AFSSQLCWVDAGTH-------RAECLNPAQPGRRKVLE-GLQYPFAV--TSYGKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp TTTTEEEEEETTTT-------EEEEEETTEEEEEEEEE-CCCSEEEE--EEETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCCC-------EEEEEecCCCceEEEec-CCCCceEE--EEeCCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 6666655444 344 77777776543222222 11122333 345666665543 89999999999999888
Q ss_pred c
Q 046773 421 R 421 (453)
Q Consensus 421 ~ 421 (453)
.
T Consensus 246 ~ 246 (267)
T 1npe_A 246 H 246 (267)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.32 Score=51.81 Aligned_cols=146 Identities=8% Similarity=-0.043 Sum_probs=91.1
Q ss_pred ceEEEEcC-CcEEEEECCCCceEEEE-eeccCCeEEEEE-E-ecCCEEEEEeCC-------C----ccccCcceEEEEEc
Q 046773 306 ESAVACTS-SRVITFDLRNQGMVLGE-RGYGRGLYVTSV-D-VNAEAYIVVENR-------E----LENQNRRLAIVRRV 370 (453)
Q Consensus 306 ~~~vas~d-~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~-~-~~g~~l~s~s~d-------g----~~~~~~~~i~Iw~~ 370 (453)
-+++...+ .+|.+-|+++.+|.... ...++...-.++ + |++++++.++.. | ..+..+.++.+.|.
T Consensus 103 ~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~ 182 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA 182 (595)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred EEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence 35565443 57999999999876532 111222222344 4 788887776422 1 11233558999999
Q ss_pred CCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC---------------------------------------CeEEEEEC
Q 046773 371 DTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE---------------------------------------GVIRVWEV 411 (453)
Q Consensus 371 ~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~---------------------------------------~tIrlWD~ 411 (453)
++.+.+.++.... .-..+..+++++++.+++. +.|.|-|.
T Consensus 183 ~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~ 261 (595)
T 1fwx_A 183 DKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDG 261 (595)
T ss_dssp TTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEEC
T ss_pred CCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeC
Confidence 9988777765422 1234567777777766542 25888999
Q ss_pred CC--CeE-EEEecccCCceEEEEecCCCEEEE-E-eCCcEEEEecC
Q 046773 412 EG--GEY-MYSFRERIGEEVIAFVGDDRHVAA-S-CGTNIHLWDFG 452 (453)
Q Consensus 412 ~t--G~~-l~tL~gh~~~~V~a~s~d~~~las-g-~D~~IklWDl~ 452 (453)
++ ++. +.+++.....-=..++|||+++.. + .+.+|.+.|+.
T Consensus 262 ~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~ 307 (595)
T 1fwx_A 262 RKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT 307 (595)
T ss_dssp SGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred cccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECc
Confidence 88 655 555543222101268999998754 4 78899999975
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.93 Score=41.90 Aligned_cols=189 Identities=4% Similarity=-0.133 Sum_probs=100.9
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC-c-eEEEEc-CCcE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH-E-SAVACT-SSRV 316 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~-~-~~vas~-d~tI 316 (453)
.++++++++.+ .++-...+.|.++|..++.... .+..-......++++++ + +.++.. .++|
T Consensus 40 gi~~d~~~~~l--y~~d~~~~~I~~~~~~g~~~~~--------------~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I 103 (267)
T 1npe_A 40 GLAFDCVDKVV--YWTDISEPSIGRASLHGGEPTT--------------IIRQDLGSPEGIALDHLGRTIFWTDSQLDRI 103 (267)
T ss_dssp EEEEETTTTEE--EEEETTTTEEEEEESSSCCCEE--------------EECTTCCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEecCCCEE--EEEECCCCEEEEEecCCCCcEE--------------EEECCCCCccEEEEEecCCeEEEEECCCCEE
Confidence 47899976642 3455567899999997764110 00000123567888863 3 455544 3689
Q ss_pred EEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-ecCCCeeEEEEeeCC
Q 046773 317 ITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-LRADRNVNVMGCMNQ 395 (453)
Q Consensus 317 rlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-~~~~~v~~~~~~~~~ 395 (453)
.+.|+...............-.-.++++++..+..+.... +...|.+.+.+. +....+. .....-..+++++++
T Consensus 104 ~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~ 178 (267)
T 1npe_A 104 EVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFS 178 (267)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS----SSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTT
T ss_pred EEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC----CCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCC
Confidence 9999875332111111111122245677555554443321 001555556553 2222232 111234567788877
Q ss_pred CeEEEEeC--CeEEEEECCCCeEEEEecccCCceEEEEecCCCEE-EEE-eCCcEEEEec
Q 046773 396 GYALMCVE--GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHV-AAS-CGTNIHLWDF 451 (453)
Q Consensus 396 ~~lls~s~--~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~l-asg-~D~~IklWDl 451 (453)
+++..+.. +.|.+.|+.++.....+.+ ... -..+.+|+..| ++. ..+.|...|.
T Consensus 179 ~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~-P~gi~~d~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQY-PFAVTSYGKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp TEEEEEETTTTEEEEEETTEEEEEEEEEC-CCS-EEEEEEETTEEEEEETTTTEEEEEET
T ss_pred CEEEEEECCCCEEEEEecCCCceEEEecC-CCC-ceEEEEeCCEEEEEECCCCeEEEEeC
Confidence 77765544 8999999986544333332 122 23455556655 444 5678887775
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.93 E-value=8.4 Score=41.61 Aligned_cols=281 Identities=11% Similarity=0.024 Sum_probs=141.4
Q ss_pred EEEEEecCC-EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC-CeEEEEeCCCCEEEEEeecCCc
Q 046773 147 CRCLTLSDL-YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD-SQLIFATLDGDIHVAVIDDVAN 224 (453)
Q Consensus 147 v~~lafs~~-~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g-~~LasgS~D~tIkvWd~~~~g~ 224 (453)
|.++..+.+ .|--|..+ -+.++|..+++..+-.... ..........|.+|..+. ..|..|+..+-|.++|..+.-.
T Consensus 213 i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~ 290 (781)
T 3v9f_A 213 VRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNP-GNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQF 290 (781)
T ss_dssp EEEEEECTTCCEEEEETT-EEEEEETTTTEEEC------------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC--
T ss_pred eeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCC-CccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCee
Confidence 778887652 33345555 7899999888754322111 000001123578888764 3566677656677777654111
Q ss_pred ceEEe-------e---ecceecCce-EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEeccccc--CCcceeeeeee
Q 046773 225 ETRTA-------H---FGSVMDDGV-LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLT--DHNTVMGWRML 290 (453)
Q Consensus 225 ~~~~~-------~---~~~v~~~~~-~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~--~~~~v~~w~~l 290 (453)
..+.. . ...+..+.+ .+..+++|..| .|+.++-|..+|..++. ....+... .+. .+
T Consensus 291 ~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW----igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~------~l 360 (781)
T 3v9f_A 291 LLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW----IGTWGGGINFISNAPPTFHTWSYSPTQMNES------SL 360 (781)
T ss_dssp -------CEEECBCSSTTSBSSSCEEEEEECSSCCEE----EEEBSSCEEEECSSCCSCEEEC----CCCSS------CC
T ss_pred eeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE----EEecCCeEEEeCCCCCcceeeccCccccccC------CC
Confidence 11110 0 011111222 36778888765 46777889999988766 21100000 000 01
Q ss_pred eeeccceeEEEEcCCc-eEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEec-CCEEEEEeCCCccccCcceEEE
Q 046773 291 TEFTEFVGRVRVTSHE-SAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVN-AEAYIVVENRELENQNRRLAIV 367 (453)
Q Consensus 291 ~~h~~~v~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~-g~~l~s~s~dg~~~~~~~~i~I 367 (453)
....|.++..++++ +.+++.++-+.++|..++...... ........|.++..+ ...+-.++.++ -+.+
T Consensus 361 --~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~-------Gl~~ 431 (781)
T 3v9f_A 361 --SNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLG-------NISY 431 (781)
T ss_dssp --SSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTE-------EEEE
T ss_pred --CCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccC-------CEEE
Confidence 12458888888654 566666677889998865322111 001112345666554 23455566544 4455
Q ss_pred EEcCCCeeEEEEEe---cCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEeccc-----CCceEEEEe--cCCCE
Q 046773 368 RRVDTFEEVCRFSL---RADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRER-----IGEEVIAFV--GDDRH 437 (453)
Q Consensus 368 w~~~tg~~v~~l~~---~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh-----~~~~V~a~s--~d~~~ 437 (453)
++..+++. ..+.. ....+..+....++...+ ++.+-|.++|..+++........ ... |.++. ++|++
T Consensus 432 ~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~d~~g~l 508 (781)
T 3v9f_A 432 YNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWI-GTHAGVFVIDLASKKVIHHYDTSNSQLLENF-VRSIAQDSEGRF 508 (781)
T ss_dssp ECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEE-EETTEEEEEESSSSSCCEEECTTTSSCSCSC-EEEEEECTTCCE
T ss_pred EcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEE-EECCceEEEeCCCCeEEecccCcccccccce-eEEEEEcCCCCE
Confidence 55555532 22211 123466665555554444 44456888999887654332211 234 66554 56666
Q ss_pred EEEEeCCcEEEEec
Q 046773 438 VAASCGTNIHLWDF 451 (453)
Q Consensus 438 lasg~D~~IklWDl 451 (453)
.++..++.+..+|.
T Consensus 509 Wigt~~~Gl~~~~~ 522 (781)
T 3v9f_A 509 WIGTFGGGVGIYTP 522 (781)
T ss_dssp EEEESSSCEEEECT
T ss_pred EEEEcCCCEEEEeC
Confidence 55444333545553
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=93.87 E-value=0.0045 Score=60.17 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhh
Q 046773 46 VEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLT 94 (453)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~ 94 (453)
++.||.|+..+|+.||+ .++++.+++||++|+.+..+..+|+++-
T Consensus 9 ~~~LP~eil~~If~~L~----~~d~~~~~~vc~~W~~~~~~~~~~~~l~ 53 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLC----LPELLKVSGVCKRWYRLASDESLWQTLD 53 (336)
T ss_dssp SSSSCHHHHHHHHTTSC----HHHHHHTTSSCHHHHHHHTCSTTSSEEE
T ss_pred hhhCCHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHhcCchhheeec
Confidence 48899999999999997 5589999999999999998888886543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.73 E-value=9 Score=41.34 Aligned_cols=280 Identities=8% Similarity=-0.001 Sum_probs=145.5
Q ss_pred EEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecC------CCCCccccccceEEEEEEcCC-eEEEEeCCCCEEEEE
Q 046773 147 CRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRP------QHSDRLGQFSRAVSGIIITDS-QLIFATLDGDIHVAV 218 (453)
Q Consensus 147 v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~g------h~~~~~~~~s~~V~~i~f~g~-~LasgS~D~tIkvWd 218 (453)
|+++..+. ..|--|+..+-|.++|..+++....... ......+.....|.+|..|.+ .|-.|+.++-|..++
T Consensus 260 i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~ 339 (781)
T 3v9f_A 260 IFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFIS 339 (781)
T ss_dssp EEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEEC
T ss_pred EEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeC
Confidence 78888865 4666677767888999988864322110 000000111236888888743 466677777777777
Q ss_pred eecCCcceEEee-----ecceecCc-eEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeee
Q 046773 219 IDDVANETRTAH-----FGSVMDDG-VLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTE 292 (453)
Q Consensus 219 ~~~~g~~~~~~~-----~~~v~~~~-~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~ 292 (453)
........+... ......+. ..+..+++|+.| .|+.++-|.++|..+++... ...+. ..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW----igt~~~Gl~~~~~~~~~~~~---~~~~~--------~~ 404 (781)
T 3v9f_A 340 NAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW----IGTDGGGINVFENGKRVAIY---NKENR--------EL 404 (781)
T ss_dssp SSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE----EEEBSSCEEEEETTEEEEEC---C-------------C
T ss_pred CCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE----EEeCCCcEEEEECCCCeEEE---ccCCC--------CC
Confidence 654111221100 01111111 136677778754 56767779999987765211 00000 01
Q ss_pred eccceeEEEEcCCc-eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecC-CEEEEEeCCCccccCcceEEEEEc
Q 046773 293 FTEFVGRVRVTSHE-SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNA-EAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 293 h~~~v~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g-~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
....|.++..++++ +.+++.++.+..+|.++++.............|.++..+. ..+-.++..| +.+++.
T Consensus 405 ~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~G--------l~~~~~ 476 (781)
T 3v9f_A 405 LSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAG--------VFVIDL 476 (781)
T ss_dssp CCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTE--------EEEEES
T ss_pred CCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCc--------eEEEeC
Confidence 12567888877554 5666666678899998865322111001123466665553 3455555533 455666
Q ss_pred CCCeeEEEEEec-----CCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEec--cc-CCceEEEEe--cCCCEEEE
Q 046773 371 DTFEEVCRFSLR-----ADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFR--ER-IGEEVIAFV--GDDRHVAA 440 (453)
Q Consensus 371 ~tg~~v~~l~~~-----~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~--gh-~~~~V~a~s--~d~~~las 440 (453)
.+++........ ...+..+....++...+++.++-|..+|..+++...-.. +- ... |.++. ++++..++
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 477 ASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNT-INQIYRSSKGQMWLA 555 (781)
T ss_dssp SSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSC-EEEEEECTTSCEEEE
T ss_pred CCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCe-eEEEEECCCCCEEEE
Confidence 655432211111 234666666666666665554446779988776533211 11 233 66654 56665554
Q ss_pred EeCCcEEEEe
Q 046773 441 SCGTNIHLWD 450 (453)
Q Consensus 441 g~D~~IklWD 450 (453)
..+|.|..+|
T Consensus 556 T~~Glv~~~d 565 (781)
T 3v9f_A 556 TGEGLVCFPS 565 (781)
T ss_dssp ETTEEEEESC
T ss_pred ECCCceEEEC
Confidence 3444325554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=91.82 E-value=12 Score=37.76 Aligned_cols=145 Identities=15% Similarity=0.031 Sum_probs=75.2
Q ss_pred EEEEeCC---CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEEcCC-
Q 046773 240 LIDFTGC---SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVACTSS- 314 (453)
Q Consensus 240 ~v~Fs~d---g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas~d~- 314 (453)
-|+++|+ |+ |+.+...+.|+.+|.++++... +..-....+.|++++++. +++...+
T Consensus 143 gvavd~~s~~g~----Lyv~D~~~~I~~id~~~g~v~~---------------~~~~~~~P~giavd~dG~lyVad~~~~ 203 (433)
T 4hw6_A 143 RMMFDPNSNYDD----LYWVGQRDAFRHVDFVNQYVDI---------------KTTNIGQCADVNFTLNGDMVVVDDQSS 203 (433)
T ss_dssp EEEECTTTTTCE----EEEECBTSCEEEEETTTTEEEE---------------ECCCCSCEEEEEECTTCCEEEEECCSC
T ss_pred eEEEccccCCCE----EEEEeCCCCEEEEECCCCEEEE---------------eecCCCCccEEEECCCCCEEEEcCCCC
Confidence 4889985 55 3444434899999998887321 111123467788987664 4444321
Q ss_pred ---c-EEEEECCCCce-EEEE-eeccCCeEEEEEEe-cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEE-EecC-CC
Q 046773 315 ---R-VITFDLRNQGM-VLGE-RGYGRGLYVTSVDV-NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRF-SLRA-DR 385 (453)
Q Consensus 315 ---t-IrlWDl~t~~~-~~~~-~g~~~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l-~~~~-~~ 385 (453)
. +...+...+.. ...+ .+.. -.-.++++ ++..+++-...+ .|...+.++++.+..+ .... ..
T Consensus 204 ~~~~gv~~~~~~~~~~~~~~~~~~~~--P~giavd~~~G~lyv~d~~~~-------~V~~~d~~~g~~~~~~~~~~~~~~ 274 (433)
T 4hw6_A 204 DTNTGIYLFTRASGFTERLSLCNARG--AKTCAVHPQNGKIYYTRYHHA-------MISSYDPATGTLTEEEVMMDTKGS 274 (433)
T ss_dssp TTSEEEEEECGGGTTCCEEEEEECSS--BCCCEECTTTCCEEECBTTCS-------EEEEECTTTCCEEEEEEECSCCSS
T ss_pred cccceEEEEECCCCeeccccccccCC--CCEEEEeCCCCeEEEEECCCC-------EEEEEECCCCeEEEEEeccCCCCC
Confidence 1 22223322111 0011 1100 01135666 455555433344 5666666666542333 2211 12
Q ss_pred eeEEEEeeCCCeEEEEeC--CeEEEEECC
Q 046773 386 NVNVMGCMNQGYALMCVE--GVIRVWEVE 412 (453)
Q Consensus 386 v~~~~~~~~~~~lls~s~--~tIrlWD~~ 412 (453)
-..++++++++++..+.. +.|+..|..
T Consensus 275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 345888888886655543 899998765
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.76 E-value=14 Score=36.49 Aligned_cols=234 Identities=8% Similarity=-0.056 Sum_probs=118.6
Q ss_pred EEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEE-eCCCCEEEEEeecCC
Q 046773 148 RCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFA-TLDGDIHVAVIDDVA 223 (453)
Q Consensus 148 ~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~Lasg-S~D~tIkvWd~~~~g 223 (453)
.|.+.++ .+|.-+ ....|+..|+.+++....+.+.. ...+++++ +..|... ...+.|+.++.++..
T Consensus 80 ~C~~~~~~~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~---------~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 149 (386)
T 3v65_B 80 SCKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLE---------NAIALDFHHRRELVFWSDVTLDRILRANLNGSN 149 (386)
T ss_dssp CEEECSSCCEEEEE-CBSCEEEECTTSCCCEEEECSCS---------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred eECCccccceeEee-cCccceeeccCCCcEEEEecCCC---------ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC
Confidence 3555554 344433 34679999998876554443321 35668876 3455544 445667777766511
Q ss_pred cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc--EEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 224 NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 224 ~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
...+ ....+ ....-|++++.+..+ .++-+..+.|.+.++.... .+. .......+.++
T Consensus 150 ~~~~--~~~~~-~~p~glavd~~~g~l--Y~~d~~~~~I~~~~~dg~~~~~l~----------------~~~l~~P~gia 208 (386)
T 3v65_B 150 VEEV--VSTGL-ESPGGLAVDWVHDKL--YWTDSGTSRIEVANLDGAHRKVLL----------------WQSLEKPRAIA 208 (386)
T ss_dssp EEEE--ECSSC-SCCCCEEEETTTTEE--EEEETTTTEEEECBTTSCSCEEEE----------------CSSCSCEEEEE
T ss_pred cEEE--EeCCC-CCccEEEEEeCCCeE--EEEcCCCCeEEEEeCCCCceEEee----------------cCCCCCCcEEE
Confidence 1111 11111 011137888765541 3444566788888886543 211 01112346788
Q ss_pred EcCC-c-eEEEEc-C-CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEe-CCCccccCcceEEEEEcCCCeeE
Q 046773 302 VTSH-E-SAVACT-S-SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 302 ~s~~-~-~~vas~-d-~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
++|. + ++.+.. . ..|...|+...............-.-.+++++++.+..+. ..+ .|...+.+.....
T Consensus 209 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~-------~I~~~d~dG~~~~ 281 (386)
T 3v65_B 209 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH-------VIERANLDGSHRK 281 (386)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT-------EEEEECTTSCSCE
T ss_pred EEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC-------EEEEEeCCCCeeE
Confidence 8863 3 344432 3 5688888874322111111111112245676666655543 333 5666666533222
Q ss_pred EEEEecCCCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCCeEEEEec
Q 046773 377 CRFSLRADRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 377 ~~l~~~~~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG~~l~tL~ 421 (453)
..+......-..++. +.+.+..+. . +.|...|..+|+.+.++.
T Consensus 282 ~~~~~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 282 AVISQGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEECSSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEECCCCCceEEEE--ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 122211122334444 344554443 3 889889988887777664
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.55 E-value=15 Score=36.81 Aligned_cols=150 Identities=8% Similarity=-0.004 Sum_probs=78.6
Q ss_pred eeEEEEcCC--c-eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 297 VGRVRVTSH--E-SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 297 v~~v~~s~~--~-~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
...|+++|. + +.++.....|+.+|++++.. ..+......-.-.+++++++.+..+...+. ... ...++....+
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~--~~~-~~v~~~~~~g 214 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-STVYSGLSKVRTICWTHEADSMIITNDQNN--NDR-PNNYILTRES 214 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-EEEECCCSCEEEEEECTTSSEEEEEECCSC--TTS-EEEEEEEGGG
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-EEEecCCCCcceEEEeCCCCEEEEEeCCCC--ccc-ceEEEEeCCC
Confidence 356788862 3 44544447899999987643 332222222233567777885555544220 000 1122322222
Q ss_pred ee--EEEEEecCCCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCCeE--EEEecccCCceEEEEecCCCEE-EEE-eCCc
Q 046773 374 EE--VCRFSLRADRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGGEY--MYSFRERIGEEVIAFVGDDRHV-AAS-CGTN 445 (453)
Q Consensus 374 ~~--v~~l~~~~~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG~~--l~tL~gh~~~~V~a~s~d~~~l-asg-~D~~ 445 (453)
.. ...+.. ......++.+++.+++..+. . +.|..+|..+++. +..+.+.....=.+|+|++++| ++- ..+.
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 11 122221 11234566777455555544 3 8999999988765 2222222122112788999955 444 6778
Q ss_pred EEEEec
Q 046773 446 IHLWDF 451 (453)
Q Consensus 446 IklWDl 451 (453)
|..+|.
T Consensus 294 I~~~~~ 299 (430)
T 3tc9_A 294 ILRSDY 299 (430)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 888764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=90.05 E-value=13 Score=34.99 Aligned_cols=215 Identities=10% Similarity=-0.034 Sum_probs=104.7
Q ss_pred EEEEEEc--CCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCC-eEEEeeCCCCc
Q 046773 195 VSGIIIT--DSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGR-AFHIWDRQAEE 271 (453)
Q Consensus 195 V~~i~f~--g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~-tIrvWD~~tg~ 271 (453)
..+++++ ++.+++-...+.|..+|.++ ...... ..+. ....++|+++|+.+ ++....++ .|-.+|..+|+
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~-~~~~---~p~gia~~~dG~l~--vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHA-TVEG---KVSGLAFTSNGDLV--ATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEE-ECSS---EEEEEEECTTSCEE--EEEECTTSCEEEEEECTTSC
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEE-eCCC---CceeEEEcCCCcEE--EEeccCCcceEEEEcCCCCe
Confidence 3456765 45445544677777777554 211111 1111 11248899999852 22222232 45556777877
Q ss_pred EEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEE-cCCcEEEEECCCCc-eEEEEee-------ccCCeEEEE
Q 046773 272 VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVAC-TSSRVITFDLRNQG-MVLGERG-------YGRGLYVTS 341 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas-~d~tIrlWDl~t~~-~~~~~~g-------~~~~~~v~~ 341 (453)
...-.. +.. ....+.+.+.+++. +++. ..+.|...|..++. .+....+ ...-.....
T Consensus 107 ~~~~~~------------~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 107 VETLLT------------LPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp EEEEEE------------CTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred EEEEEe------------CCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence 311000 000 01123344444444 3333 25778888887642 1211100 001012244
Q ss_pred EEecCCEEEEE-eCCCccccCcceEEEEEcCC-Cee--EEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeE
Q 046773 342 VDVNAEAYIVV-ENRELENQNRRLAIVRRVDT-FEE--VCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEY 416 (453)
Q Consensus 342 ~~~~g~~l~s~-s~dg~~~~~~~~i~Iw~~~t-g~~--v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~ 416 (453)
++++++.+..+ +..+ .|.+++.+. ++. ...+.. ......++..+++...++... +.|.++|.. |+.
T Consensus 174 is~dg~~lyv~d~~~~-------~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 174 LKRFGNFLYVSNTEKM-------LLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp EEEETTEEEEEETTTT-------EEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred cCcCCCEEEEEeCCCC-------EEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence 58888765444 3444 777788764 321 122211 112244667777765454444 889999975 765
Q ss_pred EE--EecccCCceEE--EEe---cCCCEEE
Q 046773 417 MY--SFRERIGEEVI--AFV---GDDRHVA 439 (453)
Q Consensus 417 l~--tL~gh~~~~V~--a~s---~d~~~la 439 (453)
.. .+...... .. +|. ||+++|.
T Consensus 245 ~~~~~~~~~~~~-p~~~a~~g~~~d~~~Ly 273 (306)
T 2p4o_A 245 TIIAQAEQGVIG-STAVAFGQTEGDCTAIY 273 (306)
T ss_dssp EEEECGGGTCTT-EEEEEECCSTTTTTEEE
T ss_pred EEEeecccccCC-ceEEEEecccCCCCEEE
Confidence 33 33322233 44 566 7877664
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.93 E-value=14 Score=37.05 Aligned_cols=145 Identities=15% Similarity=0.059 Sum_probs=78.6
Q ss_pred EEEEeC-CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcC-C-
Q 046773 240 LIDFTG-CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTS-S- 314 (453)
Q Consensus 240 ~v~Fs~-dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d-~- 314 (453)
.|+|+| ++.. |+.....+.|+.+|+++++... +..-......|+|++++ ++++... +
T Consensus 141 ~lavdp~~~g~---Lyv~d~~~~I~~id~~~~~v~~---------------~~~~~~~P~~ia~d~~G~~lyvad~~~~~ 202 (430)
T 3tc9_A 141 WLSFDPKNHNH---LYLVGEQHPTRLIDFEKEYVST---------------VYSGLSKVRTICWTHEADSMIITNDQNNN 202 (430)
T ss_dssp EEEEETTEEEE---EEEEEBTEEEEEEETTTTEEEE---------------EECCCSCEEEEEECTTSSEEEEEECCSCT
T ss_pred EEEECCCCCCe---EEEEeCCCcEEEEECCCCEEEE---------------EecCCCCcceEEEeCCCCEEEEEeCCCCc
Confidence 489998 3432 4554444889999998876211 11112345678898765 4454432 1
Q ss_pred --cEEEEECCCCceE--EEE--eeccCCeEEEEEEe-cCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecC-CCe
Q 046773 315 --RVITFDLRNQGMV--LGE--RGYGRGLYVTSVDV-NAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRA-DRN 386 (453)
Q Consensus 315 --tIrlWDl~t~~~~--~~~--~g~~~~~~v~~~~~-~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~-~~v 386 (453)
...+|-...+... ..+ ..+.+. .++++ ++..+++-...+ .|..++.++++....+.... .+-
T Consensus 203 ~~~~v~~~~~~g~~~~~~~l~~~~~p~g---iavdp~~g~lyv~d~~~~-------~V~~~~~~~~~~~~~~~~~~~~~P 272 (430)
T 3tc9_A 203 DRPNNYILTRESGFKVITELTKGQNCNG---AETHPINGELYFNSWNAG-------QVFRYDFTTQETTPLFTIQDSGWE 272 (430)
T ss_dssp TSEEEEEEEGGGTSCSEEEEEECSSCCC---EEECTTTCCEEEEETTTT-------EEEEEETTTTEEEEEEECSSSSCC
T ss_pred ccceEEEEeCCCceeeeeeeccCCCceE---EEEeCCCCEEEEEECCCC-------EEEEEECCCCcEEEEEEcCCCCcc
Confidence 1223333333221 111 112222 45777 555555544445 67777777665322222221 235
Q ss_pred eEEEEeeCCCeEEEEeC--CeEEEEECC
Q 046773 387 VNVMGCMNQGYALMCVE--GVIRVWEVE 412 (453)
Q Consensus 387 ~~~~~~~~~~~lls~s~--~tIrlWD~~ 412 (453)
+.++++++++++..+.. +.|..+|..
T Consensus 273 ~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 273 FHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred eeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 67899999986665543 889887764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=88.97 E-value=18 Score=35.41 Aligned_cols=154 Identities=10% Similarity=0.137 Sum_probs=86.7
Q ss_pred EEEeCC-CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee-ccceeEEEE---cCCceEEE-Ec--
Q 046773 241 IDFTGC-SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF-TEFVGRVRV---TSHESAVA-CT-- 312 (453)
Q Consensus 241 v~Fs~d-g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h-~~~v~~v~~---s~~~~~va-s~-- 312 (453)
++|++. +++ ++|.-..++|-.||..++....- ...+.. ..+- ...+..|.+ ++++.+.+ +.
T Consensus 18 ~~wd~~~g~~---~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s-------~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 18 TIYDRTRQVF---YQSNLYKGRIEVYNPKTQSHFNV-VIDGAS-------SNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp EEEETTTTEE---EEEETTTTEEEEECTTTCCEEEE-CCTTTC-------CSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred ccCcCCCCEE---EEEeccCCEEEEEcCCCCeEEEE-ecCCcc-------ccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 567663 443 33434789999999986652210 011000 0000 012357888 56664443 32
Q ss_pred ------------CCcEEEEECC---CCceEEEE--eeccC-----------CeEEEEEEecCCEEEEEeCC-CccccCcc
Q 046773 313 ------------SSRVITFDLR---NQGMVLGE--RGYGR-----------GLYVTSVDVNAEAYIVVENR-ELENQNRR 363 (453)
Q Consensus 313 ------------d~tIrlWDl~---t~~~~~~~--~g~~~-----------~~~v~~~~~~g~~l~s~s~d-g~~~~~~~ 363 (453)
+..+..+|+. |++.+... ..... ...-.+++++|+.+++.+.. +
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~------- 159 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP------- 159 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC-------
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC-------
Confidence 3458889999 77654322 11111 12335678889999998877 6
Q ss_pred eEEEEEcCC-CeeEEEEEecC-C-----CeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 364 LAIVRRVDT-FEEVCRFSLRA-D-----RNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 364 ~i~Iw~~~t-g~~v~~l~~~~-~-----~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
.||-++. |+.+..+.... . ....+++.|++..|++... +.+.-.|+.+-
T Consensus 160 --~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 160 --AIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp --EEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred --eEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 4555442 44444332222 1 1347888999888887655 88888898853
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=87.81 E-value=0.16 Score=53.08 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=27.9
Q ss_pred cchHHHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhc
Q 046773 43 EPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAV 83 (453)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l 83 (453)
.|.++.||.|+..+|++||. ..+++..+++||++|+.+
T Consensus 3 ~d~~~~LPdevL~~If~~L~---~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQ---LDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -------CHHHHHHHHHTCC---CHHHHHHHHTSCHHHHHH
T ss_pred ccchhhCCHHHHHHHHhhcC---CchhHHHHHHHHHHHHHh
Confidence 47789999999999999986 246889999999999988
|
| >3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A | Back alignment and structure |
|---|
Probab=87.39 E-value=0.79 Score=49.79 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=33.1
Q ss_pred EEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 046773 146 TCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFR 181 (453)
Q Consensus 146 ~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~ 181 (453)
.|.|+.++..+|++=+.|+++|+||+.|++|+.+..
T Consensus 223 ~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 378999999999999999999999999999998864
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=87.01 E-value=19 Score=36.18 Aligned_cols=149 Identities=10% Similarity=-0.011 Sum_probs=76.5
Q ss_pred eeEEEEcCC---c-eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC
Q 046773 297 VGRVRVTSH---E-SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 297 v~~v~~s~~---~-~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
...|+++++ + +.++.....|+.+|++++.. .+..+....-.-.+++++|+.+++ ...+. ..+...++....
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-~~~~~~~~~P~giavd~dG~lyVa-d~~~~---~~~~gv~~~~~~ 215 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-DIKTTNIGQCADVNFTLNGDMVVV-DDQSS---DTNTGIYLFTRA 215 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE-EEECCCCSCEEEEEECTTCCEEEE-ECCSC---TTSEEEEEECGG
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEE-EEeecCCCCccEEEECCCCCEEEE-cCCCC---cccceEEEEECC
Confidence 356888873 4 44543337899999988653 333222222334567788884444 32210 001112222211
Q ss_pred Cee--EEEEEecCCCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCCeEEEEeccc--CCce-EEEEecCCCEE-EEE-eC
Q 046773 373 FEE--VCRFSLRADRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGGEYMYSFRER--IGEE-VIAFVGDDRHV-AAS-CG 443 (453)
Q Consensus 373 g~~--v~~l~~~~~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG~~l~tL~gh--~~~~-V~a~s~d~~~l-asg-~D 443 (453)
+.. ...+. ....-..++..++.+.+..+. . +.|+.+|..+|+....+... .... =.+|+|++++| ++- ..
T Consensus 216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 110 01111 112223456666445555443 3 88999999988763333211 1111 13788999855 444 66
Q ss_pred CcEEEEec
Q 046773 444 TNIHLWDF 451 (453)
Q Consensus 444 ~~IklWDl 451 (453)
+.|+.+|+
T Consensus 295 ~~I~~~~~ 302 (433)
T 4hw6_A 295 HCIYRVDY 302 (433)
T ss_dssp TEEEEEEB
T ss_pred CEEEEEeC
Confidence 78888774
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=86.72 E-value=26 Score=34.62 Aligned_cols=88 Identities=13% Similarity=0.167 Sum_probs=53.0
Q ss_pred eEEEEEc---C----CCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECC-----CCeEEEEec-ccCCceEE
Q 046773 364 LAIVRRV---D----TFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVE-----GGEYMYSFR-ERIGEEVI 429 (453)
Q Consensus 364 ~i~Iw~~---~----tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~-----tG~~l~tL~-gh~~~~V~ 429 (453)
.+..|++ . +++.+++|.+.+ .+..++..+..+++..+-. .-|...|.+ +++.+..+. ++-...+.
T Consensus 154 ~~~q~~l~~~~~g~~~~~lVR~f~lgs-q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvE 232 (355)
T 3amr_A 154 EFEQYELKADKNGYISGKKVRAFKMNS-QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIE 232 (355)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEECSS-CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEE
T ss_pred eEEEEEEEeCCCCcccceEEEEecCCC-CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcc
Confidence 6666665 2 335677777643 4566666666677777765 336556754 456666552 33221144
Q ss_pred --EE--ecCCC--EEEEE-eCCcEEEEecC
Q 046773 430 --AF--VGDDR--HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 430 --a~--s~d~~--~lasg-~D~~IklWDl~ 452 (453)
++ .++++ .|||+ .+++..|+|..
T Consensus 233 GLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 233 GLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 34 35655 45677 78899999874
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=86.49 E-value=24 Score=34.95 Aligned_cols=138 Identities=12% Similarity=0.206 Sum_probs=72.0
Q ss_pred ceEEEEcC-CcEEEEECCCCceEEEEe-eccCCeE-EEEEEecCCE--EEEEeCCCccccCcceEEEEEcC--CCeeEEE
Q 046773 306 ESAVACTS-SRVITFDLRNQGMVLGER-GYGRGLY-VTSVDVNAEA--YIVVENRELENQNRRLAIVRRVD--TFEEVCR 378 (453)
Q Consensus 306 ~~~vas~d-~tIrlWDl~t~~~~~~~~-g~~~~~~-v~~~~~~g~~--l~s~s~dg~~~~~~~~i~Iw~~~--tg~~v~~ 378 (453)
+++++... +.+.++|+ +|+.+..+. +..+++- ...|...|+. ++.++..+.. .++++|++++ +++ +..
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~---~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEG---KNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTT---CCEEEEEEECTTTCC-EEE
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCC---CCeEEEEEECCCCCc-eee
Confidence 35666544 57999999 677665553 2222222 1234444544 3444432100 1289999774 332 444
Q ss_pred EEec--C-----CCeeEEEE--eeCCC--eEEEEeC-CeEEEEEC-------CCCeEEEEecccCCceEEEE--ecCCCE
Q 046773 379 FSLR--A-----DRNVNVMG--CMNQG--YALMCVE-GVIRVWEV-------EGGEYMYSFRERIGEEVIAF--VGDDRH 437 (453)
Q Consensus 379 l~~~--~-----~~v~~~~~--~~~~~--~lls~s~-~tIrlWD~-------~tG~~l~tL~gh~~~~V~a~--s~d~~~ 437 (453)
+..- | .....++. ++..+ +++.... +.+..|++ .+++.+++|.-.. . +..+ .+...+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-q-~EgcvvDd~~g~ 193 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-Q-TEGMAADDEYGR 193 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS-C-EEEEEEETTTTE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC-C-cceEEEcCCCCe
Confidence 4210 1 22344444 34333 3444444 88888888 3457777775432 2 4433 355567
Q ss_pred EEEE-eCCcEEEEecC
Q 046773 438 VAAS-CGTNIHLWDFG 452 (453)
Q Consensus 438 lasg-~D~~IklWDl~ 452 (453)
|-.+ +|.. ||.+.
T Consensus 194 Lyv~eEd~G--Iw~~d 207 (355)
T 3amr_A 194 LYIAEEDEA--IWKFS 207 (355)
T ss_dssp EEEEETTTE--EEEEE
T ss_pred EEEecccce--EEEEe
Confidence 7777 6644 66554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.64 E-value=46 Score=36.43 Aligned_cols=240 Identities=8% Similarity=-0.057 Sum_probs=119.0
Q ss_pred EEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcC--CeEEEE-eCCCCEEEEEeecCC
Q 046773 148 RCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITD--SQLIFA-TLDGDIHVAVIDDVA 223 (453)
Q Consensus 148 ~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g--~~Lasg-S~D~tIkvWd~~~~g 223 (453)
.|.+.+. .+|.-. ....|+.-++...+....+.+. . .+.+|+|+. .+|... ...+.|+.++++...
T Consensus 388 ~C~~~~~~p~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~-~--------~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~ 457 (791)
T 3m0c_C 388 ACKAVGSIAYLFFT-NRHEVRKMTLDRSEYTSLIPNL-R--------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 457 (791)
T ss_dssp CCEETTSCCEEEEE-CBSSEEEECTTSCCCEEEECSC-S--------SEEEEEEETTTTEEEEEETTTTEEEEEEC----
T ss_pred eeeecccccccccc-cccceeEeeccCCcceeeecCC-C--------ceEEEeecccCCeeEEeeccceeEEEEeccCCC
Confidence 3555554 244333 3467888888877654444331 1 356688863 455444 445667777766411
Q ss_pred c--ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 224 N--ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 224 ~--~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
. .........+ .....|++++.++.+ .++-+..+.|.+-|+....... .+.........|+
T Consensus 458 ~~~~~~~vi~~~l-~~P~GLAvD~~~~~L--Y~tD~~~~~I~v~~ldG~~~~~--------------l~~~~l~~P~gIa 520 (791)
T 3m0c_C 458 GVSSYDTVISRDI-QAPDGLAVDWIHSNI--YWTDSVLGTVSVADTKGVKRKT--------------LFRENGSKPRAIV 520 (791)
T ss_dssp ----CEEEECSSC-SCCCEEEEETTTTEE--EEEETTTTEEEEEETTSSSEEE--------------EEECTTCCEEEEE
T ss_pred CCcceeEEEecCC-CCcceeeeeecCCcE--EEEecCCCeEEEEeCCCCeEEE--------------EEeCCCCCcceEE
Confidence 0 0111111011 111247888887642 3455667899999987654210 0011112356788
Q ss_pred EcCC-c-eEEEEc-C-CcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeE
Q 046773 302 VTSH-E-SAVACT-S-SRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 302 ~s~~-~-~~vas~-d-~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
++|. + ++.+.. . ..|..-++.... ...+ ......-.-.+|++....|..+.... ..|.+.+.+.....
T Consensus 521 VDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~------~~I~~~d~dG~~~~ 593 (791)
T 3m0c_C 521 VDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKL------HSISSIDVNGGNRK 593 (791)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTT------TEEEEEETTSCSCE
T ss_pred EecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEeCCCCCceEEEEecCCCeEEEEeCCC------CcEEEEecCCCceE
Confidence 8874 3 555543 2 578888887433 2222 11111122245665566665553322 15555566533222
Q ss_pred EEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEec
Q 046773 377 CRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 377 ~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~ 421 (453)
..+.........+.....+++|..+.. +.|..-|..+|+.+.++.
T Consensus 594 ~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 594 TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 222221111122233334556654443 788888888887666553
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.78 E-value=55 Score=35.80 Aligned_cols=199 Identities=10% Similarity=0.014 Sum_probs=99.1
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECCCC----eEEEEecCCCCCccccccceEEEEEEc--CCeEEEE-eCCCCEEE
Q 046773 147 CRCLTLSD---LYLACGFADGAVRLFDLTTR----LHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFA-TLDGDIHV 216 (453)
Q Consensus 147 v~~lafs~---~~LaSGS~D~TIrlWD~~tg----~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~Lasg-S~D~tIkv 216 (453)
+..|+|+. .+.++-...+.|+.+++... .....+.... ....+|++| +..|+.+ +..++|.+
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l--------~~P~GLAvD~~~~~LY~tD~~~~~I~v 497 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--------QAPDGLAVDWIHSNIYWTDSVLGTVSV 497 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--------SCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC--------CCcceeeeeecCCcEEEEecCCCeEEE
Confidence 56788875 35667677788999998753 2222222111 123457776 5555544 45677877
Q ss_pred EEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEee-CC-CeEEEeeCCCCcEEecccccCCcceeeeeeeeeec
Q 046773 217 AVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL-AG-RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT 294 (453)
Q Consensus 217 Wd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D-~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~ 294 (453)
-+++.....++. ...+ .....|+++|.+.+ |+-.. .. ..|.+-++....... .+..--
T Consensus 498 ~~ldG~~~~~l~--~~~l-~~P~gIaVDp~~g~---LYwtD~g~~~~I~~~~~dG~~~~~--------------lv~~~l 557 (791)
T 3m0c_C 498 ADTKGVKRKTLF--RENG-SKPRAIVVDPVHGF---MYWTDWGTPAKIKKGGLNGVDIYS--------------LVTENI 557 (791)
T ss_dssp EETTSSSEEEEE--ECTT-CCEEEEEEETTTTE---EEEEECSSSCEEEEEETTSCCEEE--------------EECSSC
T ss_pred EeCCCCeEEEEE--eCCC-CCcceEEEecCCCC---EEEecCCCCCeEEEEecCCCceEE--------------EEeCCC
Confidence 777641112221 1111 11224889987554 33322 22 678888886543210 001111
Q ss_pred cceeEEEEcCC--ceEEEEcC-CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 295 EFVGRVRVTSH--ESAVACTS-SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 295 ~~v~~v~~s~~--~~~vas~d-~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
.+.+.|++++. .+.++-.. ..|...|+..............-....++++.++.|..+.... ..|..-+..
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~------~~I~~~dk~ 631 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN------EAIFSANRL 631 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTT------TEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCC------CEEEEEeCC
Confidence 35677888843 35566443 5799999875432221222111111245665666655543322 144444555
Q ss_pred CCeeEEEE
Q 046773 372 TFEEVCRF 379 (453)
Q Consensus 372 tg~~v~~l 379 (453)
+|+.+..+
T Consensus 632 tG~~~~~l 639 (791)
T 3m0c_C 632 TGSDVNLL 639 (791)
T ss_dssp TCCCCEEE
T ss_pred CCcceEEe
Confidence 66555444
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=82.92 E-value=6.8 Score=42.27 Aligned_cols=222 Identities=7% Similarity=-0.093 Sum_probs=104.8
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEE-eCCCCEEEEEeecC--CcceEEeeecceecC
Q 046773 163 DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFA-TLDGDIHVAVIDDV--ANETRTAHFGSVMDD 237 (453)
Q Consensus 163 D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~Lasg-S~D~tIkvWd~~~~--g~~~~~~~~~~v~~~ 237 (453)
.+.|+.-++.+.+....+.... .+.+|+++ +..|... ...+.|+..++++. +..........+ ..
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~---------~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~-~~ 454 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLR---------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-QA 454 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCT---------TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC---
T ss_pred ccceEEEeCCCCcceeeeccCc---------ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC-CC
Confidence 4688888998877654443211 12346665 3455544 34567877776531 000000000000 01
Q ss_pred ceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCC-c-eEEEEc-C-
Q 046773 238 GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH-E-SAVACT-S- 313 (453)
Q Consensus 238 ~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~-~-~~vas~-d- 313 (453)
...|++++.++.+ +++-...++|.+.|+.......- +..-......++++|. + ++.+.. .
T Consensus 455 P~glavD~~~g~L--Y~tD~~~~~I~v~d~dg~~~~~l--------------~~~~~~~P~giavDp~~g~ly~td~~~~ 518 (699)
T 1n7d_A 455 PDGLAVDWIHSNI--YWTDSVLGTVSVADTKGVKRKTL--------------FREQGSKPRAIVVDPVHGFMYWTDWGTP 518 (699)
T ss_dssp CCCEECCCSSSBC--EECCTTTSCEEEEBSSSCCEEEE--------------CCCSSCCCCCEECCSSSSCCEECCCSSS
T ss_pred cceEEEEeeCCcE--EEEeccCCeEEEEecCCCceEEE--------------EeCCCCCcceEEEccCCCcEEEcccCCC
Confidence 1136777554431 33445567899999876542110 0000012345677753 2 444432 2
Q ss_pred CcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEE-eCCCccccCcceEEEEEcCCCeeEEEEEec-C--CCeeE
Q 046773 314 SRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVV-ENRELENQNRRLAIVRRVDTFEEVCRFSLR-A--DRNVN 388 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~-s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~-~--~~v~~ 388 (453)
.+|...++..... ..+ ......-.-.+|+++++.|..+ +... .|.+.+.+... ...+... . .....
T Consensus 519 ~~I~~~~~dG~~~-~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~-------~I~~~d~dG~~-~~~~~~~~~~~~~P~g 589 (699)
T 1n7d_A 519 AKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLH-------SISSIDVNGGN-RKTILEDEKRLAHPFS 589 (699)
T ss_dssp CCEEBCCSSSCCC-CEESCSSCSSCCCEEECTTTCCEEEEETTTT-------EEEEECSSSSC-CEEECCCSSSCSSCCC
T ss_pred CeEEEEeCCCCCe-eEEEeCCCCCccEEEEeccCCEEEEEecCCC-------eEEEEccCCCc-eEEEEecCCcCCCceE
Confidence 5677777753211 111 0000001114666665554443 3333 66666665322 2222211 1 11122
Q ss_pred EEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEec
Q 046773 389 VMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 389 ~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~ 421 (453)
++. ++.++..+.. +.|...|..+|+.+.++.
T Consensus 590 lav--d~~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 590 LAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp CEE--ETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred eEE--ECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 333 3445554433 899999999998887774
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=82.70 E-value=38 Score=34.94 Aligned_cols=151 Identities=10% Similarity=0.019 Sum_probs=79.3
Q ss_pred eeEEEEcCC--c-eEEEEcC-CcEEEEECCCCceEEEE--eeccC--CeEEEEE-------EecCCEEEEEeCCCccccC
Q 046773 297 VGRVRVTSH--E-SAVACTS-SRVITFDLRNQGMVLGE--RGYGR--GLYVTSV-------DVNAEAYIVVENRELENQN 361 (453)
Q Consensus 297 v~~v~~s~~--~-~~vas~d-~tIrlWDl~t~~~~~~~--~g~~~--~~~v~~~-------~~~g~~l~s~s~dg~~~~~ 361 (453)
...|+|+|. . ++++... ..|++.|++++.. .++ .+... .-.-.+| +++++.++.+...+....+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v-~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML-SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE-EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE-EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 457889972 3 4555443 5799999998643 333 11111 1233556 7788866666544311011
Q ss_pred cceEEEEEcCC-CeeE-----EEEE-e-cCCCeeEEEEeeCCCeEEEEeC--CeEEEEECC-------CCeE--------
Q 046773 362 RRLAIVRRVDT-FEEV-----CRFS-L-RADRNVNVMGCMNQGYALMCVE--GVIRVWEVE-------GGEY-------- 416 (453)
Q Consensus 362 ~~~i~Iw~~~t-g~~v-----~~l~-~-~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~-------tG~~-------- 416 (453)
...+.+.+... ++-. ..+. + ++ ..++.+++.++|..+.. +.|..+|++ +++.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p---~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQC---NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCC---CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred CceEEEEecCCCCceeecccceeeccCCCc---eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 11233333222 1110 1221 1 23 34566776677766554 889999998 6653
Q ss_pred ------EEEecccCCceEEEEecCCCEEEEE--eCCcEEEEec
Q 046773 417 ------MYSFRERIGEEVIAFVGDDRHVAAS--CGTNIHLWDF 451 (453)
Q Consensus 417 ------l~tL~gh~~~~V~a~s~d~~~lasg--~D~~IklWDl 451 (453)
+.++.......-.+|+|++++|..+ ..+.|+.+|+
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 2233221112123889999964333 5667777553
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=82.55 E-value=4.1 Score=43.98 Aligned_cols=197 Identities=11% Similarity=0.013 Sum_probs=93.9
Q ss_pred EEEEecC--C-EEEEEeCCCcEEEEECCCC---eEEEEecCCCCCccccccceEEEEEEc--CCeEE-EEeCCCCEEEEE
Q 046773 148 RCLTLSD--L-YLACGFADGAVRLFDLTTR---LHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLI-FATLDGDIHVAV 218 (453)
Q Consensus 148 ~~lafs~--~-~LaSGS~D~TIrlWD~~tg---~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~La-sgS~D~tIkvWd 218 (453)
..++|++ . +.++-...+.|+..++.+. ....++..... ....+|+++ +..|+ +-...++|.+.+
T Consensus 409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~-------~~P~glavD~~~g~LY~tD~~~~~I~v~d 481 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-------QAPDGLAVDWIHSNIYWTDSVLGTVSVAD 481 (699)
T ss_dssp CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC---------CCCEECCCSSSBCEECCTTTSCEEEEB
T ss_pred EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC-------CCcceEEEEeeCCcEEEEeccCCeEEEEe
Confidence 4567764 3 4555556789999998761 11111110000 012346765 34444 334567788877
Q ss_pred eecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCC-CeEEEeeCCCCc--EEecccccCCcceeeeeeeeeecc
Q 046773 219 IDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG-RAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 219 ~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D-~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
.+..-..++ ...+. .....|+++|++.++ .++-... +.|.+.++.... .+. ..--.
T Consensus 482 ~dg~~~~~l-~~~~~--~~P~giavDp~~g~l--y~td~~~~~~I~~~~~dG~~~~~l~----------------~~~l~ 540 (699)
T 1n7d_A 482 TKGVKRKTL-FREQG--SKPRAIVVDPVHGFM--YWTDWGTPAKIKKGGLNGVDIYSLV----------------TENIQ 540 (699)
T ss_dssp SSSCCEEEE-CCCSS--CCCCCEECCSSSSCC--EECCCSSSCCEEBCCSSSCCCCEES----------------CSSCS
T ss_pred cCCCceEEE-EeCCC--CCcceEEEccCCCcE--EEcccCCCCeEEEEeCCCCCeeEEE----------------eCCCC
Confidence 664111111 11110 111237888876542 2232222 567777765332 221 00013
Q ss_pred ceeEEEEcCC--ceEEEEcC-CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEe-CCCccccCcceEEEEEcC
Q 046773 296 FVGRVRVTSH--ESAVACTS-SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVD 371 (453)
Q Consensus 296 ~v~~v~~s~~--~~~vas~d-~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~ 371 (453)
.-+.|+|+++ .+.++... .+|...|+....................++++++.++.+. ..+ .|...+..
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~-------~V~~~d~~ 613 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE-------AIFSANRL 613 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTT-------CEEEEETT
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCC-------eEEEEEcc
Confidence 3467888864 35566543 6799999874322111111000001123444555554443 333 66666766
Q ss_pred CCeeEEEE
Q 046773 372 TFEEVCRF 379 (453)
Q Consensus 372 tg~~v~~l 379 (453)
+|+.+..+
T Consensus 614 ~G~~~~~i 621 (699)
T 1n7d_A 614 TGSDVNLL 621 (699)
T ss_dssp TEEEEECC
T ss_pred CCCceEEe
Confidence 77666555
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=81.72 E-value=39 Score=32.58 Aligned_cols=233 Identities=8% Similarity=-0.048 Sum_probs=117.7
Q ss_pred EEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEE-eCCCCEEEEEeecCC
Q 046773 148 RCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFA-TLDGDIHVAVIDDVA 223 (453)
Q Consensus 148 ~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~Lasg-S~D~tIkvWd~~~~g 223 (453)
.|.+.++ .+|.-+ ..+.|+..++.+.+....+.+.. ...+++++ +..|... ...+.|+.++.++..
T Consensus 37 ~C~~~~~~~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~---------~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 37 SCKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLE---------NAIALDFHHRRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp CEEESSSCCEEEEE-CBSCEEEECTTSCCEEEEECSCS---------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cccccccCceeEee-cccceEEEeCCCCeeEEeecCCC---------ceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence 4666554 344333 34568888988776554443321 34668876 3455544 446677777766511
Q ss_pred cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc--EEecccccCCcceeeeeeeeeeccceeEEE
Q 046773 224 NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFVGRVR 301 (453)
Q Consensus 224 ~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~ 301 (453)
...+. ..+ + .....+++++.+..+ .++-+..+.|.+.|+.... .+. .......+.++
T Consensus 107 ~~~~~-~~~-~-~~p~glavd~~~g~l--y~~d~~~~~I~~~~~dG~~~~~l~----------------~~~l~~P~~ia 165 (349)
T 3v64_C 107 VEEVV-STG-L-ESPGGLAVDWVHDKL--YWTDSGTSRIEVANLDGAHRKVLL----------------WQSLEKPRAIA 165 (349)
T ss_dssp CEEEE-CSS-C-SCCCEEEEETTTTEE--EEEETTTTEEEEEETTSCSCEEEE----------------CTTCSCEEEEE
T ss_pred ceEEE-eCC-C-CCccEEEEecCCCeE--EEEcCCCCeEEEEcCCCCceEEEE----------------eCCCCCcceEE
Confidence 11111 111 1 111237888765531 3454566789999987543 211 01112346788
Q ss_pred EcC-Cc-eEEEEc-C-CcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEe-CCCccccCcceEEEEEcCCCee
Q 046773 302 VTS-HE-SAVACT-S-SRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVDTFEE 375 (453)
Q Consensus 302 ~s~-~~-~~vas~-d-~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~tg~~ 375 (453)
++| ++ ++.+.. . ..|...|+..... ..+ ......-.-.+++++++.+..+. ..+ .|...+.+....
T Consensus 166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~-------~I~~~~~dG~~~ 237 (349)
T 3v64_C 166 LHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHH-------VIERANLDGSHR 237 (349)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTT-------EEEEEETTSCSC
T ss_pred EecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCC-------EEEEEeCCCCce
Confidence 886 33 344432 3 5688888874322 221 11111112245666566655543 333 666667664322
Q ss_pred EEEEEecCCCeeEEEEeeCCCeEEEEe-C-CeEEEEECCCCeEEEEec
Q 046773 376 VCRFSLRADRNVNVMGCMNQGYALMCV-E-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~~lls~s-~-~tIrlWD~~tG~~l~tL~ 421 (453)
...+......-..++. +.+.+..+. . +.|...|..+|+.+.++.
T Consensus 238 ~~~~~~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 238 KAVISQGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEECSSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEeCCCCCceEEEE--ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2112111122334444 344554443 3 788888877887666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 453 | ||||
| d2ovrb1 | 102 | a.158.1.1 (B:2263-2364) F-box/WD repeat-containing | 3e-06 | |
| d1p22a1 | 118 | a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b | 1e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.002 |
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (103), Expect = 3e-06
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 70 LANVFQVCSTWRAVSRSDLLWHRLTRRIWGRTNL------------LHATWRDEYIYRHR 117
L Q C WR ++ +LLW + L +H+ W+ YI +HR
Sbjct: 39 LLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHR 98
Query: 118 TAQN 121
N
Sbjct: 99 IDTN 102
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (99), Expect = 1e-05
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 45 FVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRRIWGRTNLL 104
F+ AL A+ + ++ A +L VC W V+ +LW +L R+ +L
Sbjct: 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSL- 68
Query: 105 HATWRDEYIYRHRTAQNFRTRRYTHFN 131
WR R F+ +
Sbjct: 69 ---WRGLAERRGWGQYLFKNKPPDGNA 92
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.3 bits (100), Expect = 4e-05
Identities = 27/311 (8%), Positives = 69/311 (22%), Gaps = 22/311 (7%)
Query: 156 YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDI 214
Y+ + + D + + ++ ++ +AT++
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVI------TIADAGPTPMVPMVAPGGRIAYATVNKSE 56
Query: 215 HVAVIDDVANETRTAHFGSVMDD------GVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQ 268
+ ID V ET S ++ G + G + L F + +
Sbjct: 57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 269 AEEV-FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMV 327
+ + ++ + V + + D Q
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176
Query: 328 L-------GERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS 380
+ + + + R + ++T E R
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236
Query: 381 LRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVA- 439
D V+ +++E + + D V
Sbjct: 237 RIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL 296
Query: 440 ASCGTNIHLWD 450
++ +D
Sbjct: 297 GGALGDLAAYD 307
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 39/318 (12%), Positives = 71/318 (22%), Gaps = 15/318 (4%)
Query: 125 RRYTHFNLYFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQH 184
H F V G + S A G V +FD T L +
Sbjct: 57 VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD 116
Query: 185 SDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFT 244
+ R R S + L G A + + + I
Sbjct: 117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS---VPGASDDQLTKSASCFHIHPG 173
Query: 245 GCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304
Y G + D A G + G +
Sbjct: 174 A----AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229
Query: 305 HESA-VACTSSRVITFDLRNQGMVLGERGYGR---GLYVTSVDVNAEAYIVVENRELENQ 360
S + T G G + G + + N + +++ +
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289
Query: 361 NRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQG----YALMCVEGVIRVWEVEGGEY 416
V + + + + G YA V+ +++ +
Sbjct: 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349
Query: 417 MYSFRERIGEEVIAFVGD 434
S G E ++ +
Sbjct: 350 QSSVELDKGPESLSVQNE 367
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 37/304 (12%), Positives = 81/304 (26%), Gaps = 12/304 (3%)
Query: 149 CLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFA 208
CL D Y+ G D +R++D + + H V + ++ +
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDG-------GVWALKYAHGGILVS 69
Query: 209 TLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWD-R 267
G V + H + V + + G H+W
Sbjct: 70 ---GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 268 QAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMV 327
+ V G+ D+ V + V R + S + + V +
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 186
Query: 328 LGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNV 387
+ + D E + + + I E+ V
Sbjct: 187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 246
Query: 388 NVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAASCGTNIH 447
++ ++ +G IR W+ +S+ + F D + + +
Sbjct: 247 GLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFN 306
Query: 448 LWDF 451
+++
Sbjct: 307 IYNL 310
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.1 bits (92), Expect = 3e-04
Identities = 24/317 (7%), Positives = 78/317 (24%), Gaps = 29/317 (9%)
Query: 156 YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDI 214
Y+ + + D+ + ++ ++ D++ + +
Sbjct: 10 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFG-------PGTAMMAPDNRTAYVLNNHYG 62
Query: 215 HVAVID-----DVANETRTAHFGSVMDDGVLIDFTGCSRY-WVGLYAGLAGRAFHIWDRQ 268
+ ID + + ++ G V + + + + ++
Sbjct: 63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122
Query: 269 AEEVFVGGDLTDHNTVMGWRMLTEFT----EFVGRVRVTSHESAVACTSSRVITFDLRNQ 324
EVF D + V + M + G + V + + T L +
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLR 182
Query: 325 GMVLGER--GYGRGLYVTSVDVNAEAYIVVENR--------ELENQNRRLAIVRRVDTFE 374
+ + + + R + V
Sbjct: 183 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT 242
Query: 375 EVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVIAFVGD 434
F+ + + + V + ++++ + + + +AF
Sbjct: 243 HTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK 302
Query: 435 DRHVAASCGTN-IHLWD 450
+ N + +++
Sbjct: 303 GDKLYLGGTFNDLAVFN 319
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.6 bits (85), Expect = 0.002
Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 5/127 (3%)
Query: 90 WHRLTRRIWGRTNLLHATWRDEYIYRHRTAQNFRTRRYTHFNLYFDPSDVDNPDGLTCRC 149
R N + + N T +V + +
Sbjct: 186 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 245
Query: 150 LTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFAT 209
+ +A AD ++++++ T +T + GII T L+ +
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-----RIEDQQLGIIWTKQALVSIS 300
Query: 210 LDGDIHV 216
+G I+
Sbjct: 301 ANGFINF 307
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.98 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.85 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.83 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.81 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.76 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.76 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.74 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.72 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.69 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.63 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.62 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.6 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.5 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.49 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.46 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.45 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.38 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.3 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 99.22 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.11 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.92 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.75 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.39 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.98 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.96 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.94 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.91 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.84 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.73 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.66 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.5 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.48 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.42 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.0 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.9 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.83 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.45 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 95.95 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 95.76 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 95.51 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 92.9 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.34 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 90.19 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 87.95 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 87.82 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.8e-38 Score=294.74 Aligned_cols=286 Identities=14% Similarity=0.176 Sum_probs=231.0
Q ss_pred hcccccCceeeEEeeCCCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEE
Q 046773 120 QNFRTRRYTHFNLYFDPSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG 197 (453)
Q Consensus 120 ~nw~~g~~~~~~~~~~~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~ 197 (453)
|+|.-..-...+|. ||+.+ |+||+|++ ++|||||.|++|||||+++++++++|.+|.. .|.+
T Consensus 1 k~w~p~~~~~~~L~----GH~~~----I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~--------~V~~ 64 (317)
T d1vyhc1 1 KEWIPRPPEKYALS----GHRSP----VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD--------SVQD 64 (317)
T ss_dssp CCCCCCSSCSCEEE----CCSSC----EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS--------CEEE
T ss_pred CccCCCCCccEEEc----CCCCC----eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC--------cEEE
Confidence 34544333333443 89855 89999986 6999999999999999999999999998754 5788
Q ss_pred EEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe
Q 046773 198 IIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV 274 (453)
Q Consensus 198 i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~ 274 (453)
++++ +..+++++.+.++.+|+..... ...+..|...+ ..+.|+|+++. |++++.|+++++||+++++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~- 136 (317)
T d1vyhc1 65 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV----SSVSIMPNGDH---IVSASRDKTIKMWEVQTGYCV- 136 (317)
T ss_dssp EEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCE----EEEEECSSSSE---EEEEETTSEEEEEETTTCCEE-
T ss_pred Eeeecccccccccccccccccccccccccccccccccccc----eeeeccCCCce---EEeeccCcceeEeecccceee-
Confidence 8875 5689999999999999876522 22223333332 24789999986 789999999999999998843
Q ss_pred cccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEec-------
Q 046773 275 GGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVN------- 345 (453)
Q Consensus 275 g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~------- 345 (453)
.++.+|...+.++++++++. ++++.|++|++||+.++.++..+.+|...+...+++++
T Consensus 137 -------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 203 (317)
T d1vyhc1 137 -------------KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 203 (317)
T ss_dssp -------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGG
T ss_pred -------------eEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceee
Confidence 34667888999999998764 44567899999999998877766666554443334332
Q ss_pred -------------CCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEEC
Q 046773 346 -------------AEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEV 411 (453)
Q Consensus 346 -------------g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~ 411 (453)
+..+++++.|+ ++++|+..+++++.++..|...+..+.+++++.++++++. ++|+|||+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~-------~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 276 (317)
T d1vyhc1 204 EATGSETKKSGKPGPFLLSGSRDK-------TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 276 (317)
T ss_dssp GCCSCC-------CCEEEEEETTS-------EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred ccccceeeeeccCCceeEeccCCC-------EEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 34678889999 9999999999999999999988999999999999998887 99999999
Q ss_pred CCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 412 EGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 412 ~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
.+++++.+|.+|.+. |+ +|+||+++|+|| .|++|+|||
T Consensus 277 ~~~~~~~~~~~h~~~-V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 277 KNKRCMKTLNAHEHF-VTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp TTSCCCEEEECCSSC-EEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEcCCCCC-EEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999998 88 578999999999 999999998
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-37 Score=291.58 Aligned_cols=289 Identities=14% Similarity=0.196 Sum_probs=212.2
Q ss_pred ccccCceee-EEeeCCCCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE
Q 046773 122 FRTRRYTHF-NLYFDPSDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII 200 (453)
Q Consensus 122 w~~g~~~~~-~~~~~~~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f 200 (453)
|+.+..++. +++ ||+ +.| +.|++|++++|||||.|++|||||+.+++++++|.+|.. .|.+++|
T Consensus 1 W~~~~~~~~~~l~----GH~--~~V-~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~--------~V~~v~~ 65 (342)
T d2ovrb2 1 WRRGELKSPKVLK----GHD--DHV-ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG--------GVWSSQM 65 (342)
T ss_dssp HHHSCCCCCEEEE----CST--TSC-EEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSS--------CEEEEEE
T ss_pred CCCCCCCcCEEEC----CcC--Cce-EEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC--------CEEEEEe
Confidence 677777765 443 998 556 469999999999999999999999999999999998764 6888999
Q ss_pred cCCeEEEEeCCCCEEEEEeecCCcceEEee--eccee-------------cCc---------------------eEEEEe
Q 046773 201 TDSQLIFATLDGDIHVAVIDDVANETRTAH--FGSVM-------------DDG---------------------VLIDFT 244 (453)
Q Consensus 201 ~g~~LasgS~D~tIkvWd~~~~g~~~~~~~--~~~v~-------------~~~---------------------~~v~Fs 244 (453)
+++.|++||.|+++++|+..... ...... ...+. .+. ....+.
T Consensus 66 ~~~~l~s~s~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
T d2ovrb2 66 RDNIIISGSTDRTLKVWNAETGE-CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 144 (342)
T ss_dssp ETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE
T ss_pred CCCccccceeccccccccccccc-ceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeec
Confidence 99999999999999999976511 111100 00000 000 000111
Q ss_pred CCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCC
Q 046773 245 GCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQ 324 (453)
Q Consensus 245 ~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~ 324 (453)
+.... ++.++.|++|++||...++.. ..+.+|...+..+.+++..+++++.|++|++||++++
T Consensus 145 ~~~~~---~~~~~~d~~i~~~d~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~ 207 (342)
T d2ovrb2 145 YDGRR---VVSGAYDFMVKVWDPETETCL--------------HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 207 (342)
T ss_dssp ECSSC---EEEEETTSCEEEEEGGGTEEE--------------EEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC
T ss_pred cccce---eeeecCCCeEEEeecccceee--------------EEEcCcccccccccCCCCEEEEEeCCCeEEEeecccc
Confidence 11111 344555555555555444421 3456777777788888877888889999999999998
Q ss_pred ceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCe-eEEEEeeCCCeEEEEeC
Q 046773 325 GMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRN-VNVMGCMNQGYALMCVE 403 (453)
Q Consensus 325 ~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v-~~~~~~~~~~~lls~s~ 403 (453)
+++....+|. ..+.+++++++.+++++.|+ +|+||+....+....+..+.... ......+++.++++++.
T Consensus 208 ~~~~~~~~~~--~~v~~~~~~~~~l~s~s~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 278 (342)
T d2ovrb2 208 NCIHTLTGHQ--SLTSGMELKDNILVSGNADS-------TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 278 (342)
T ss_dssp CEEEEECCCC--SCEEEEEEETTEEEEEETTS-------CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEET
T ss_pred eeeeEecccc--cceeEEecCCCEEEEEcCCC-------EEEEEecccccccccccccceeeeceeecccCCCeeEEEcC
Confidence 8877665554 45788999999999999999 99999999988877776543222 22334456778888887
Q ss_pred -CeEEEEECCCCeEEEEec-----ccCCceEE--EEecCCCEEEEE-eCCc----EEEEecCC
Q 046773 404 -GVIRVWEVEGGEYMYSFR-----ERIGEEVI--AFVGDDRHVAAS-CGTN----IHLWDFGA 453 (453)
Q Consensus 404 -~tIrlWD~~tG~~l~tL~-----gh~~~~V~--a~s~d~~~lasg-~D~~----IklWDl~~ 453 (453)
++|||||+++|+++++|. +|.+. |+ +|+||+.+||+| .||+ |++|||.+
T Consensus 279 Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~-v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGV-VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp TSEEEEEETTTCCEEEEEEECTTGGGTCE-EEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCEEEEEECCCCCEEEEEecccCCCCCCC-EEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 999999999999999884 56666 88 567999999999 8886 99999974
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.1e-36 Score=278.60 Aligned_cols=271 Identities=14% Similarity=0.180 Sum_probs=216.3
Q ss_pred CCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEE
Q 046773 137 SDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHV 216 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkv 216 (453)
.+|. .+ |+|++|++++|||||.|++|||||+++++++++|++|.. .|.+|+|+++.|+|||.|++|++
T Consensus 12 ~~~~--~~--V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~--------~V~~v~~~~~~l~s~s~D~~i~~ 79 (293)
T d1p22a2 12 SETS--KG--VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG--------SVLCLQYDERVIITGSSDSTVRV 79 (293)
T ss_dssp CSSC--CC--EEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSS--------CEEEEECCSSEEEEEETTSCEEE
T ss_pred CCCC--CC--EEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC--------CEeeeecccceeecccccccccc
Confidence 3676 44 789999999999999999999999999999999998764 68889999999999999999999
Q ss_pred EEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccc
Q 046773 217 AVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 217 Wd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
|++.. +.......... .....+.+... .++++..++++++||..+..... ....+..|...
T Consensus 80 ~~~~~-~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 140 (293)
T d1p22a2 80 WDVNT-GEMLNTLIHHC----EAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDIT-----------LRRVLVGHRAA 140 (293)
T ss_dssp EESSS-CCEEEEECCCC----SCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCE-----------EEEEECCCSSC
T ss_pred ccccc-ccccccccccc----ccccccccccc---ceeecccccceeEeecccccccc-----------ccccccccccc
Confidence 99987 31111111110 11233334433 27789999999999998866110 01345677788
Q ss_pred eeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeE
Q 046773 297 VGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 297 v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
+..+.+.+...++++.|++|++||+++++++..+.++. ..+..+.+++..+++++.|+ +++||+..+.+++
T Consensus 141 v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~ 211 (293)
T d1p22a2 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK--RGIACLQYRDRLVVSGSSDN-------TIRLWDIECGACL 211 (293)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEEETTEEEEEETTS-------CEEEEETTTCCEE
T ss_pred cccceecccccccccCCCceeeecCCCCcEEEEEcccc--cccccccCCCCeEEEecCCC-------EEEEEecccceee
Confidence 88888888888888899999999999998877765554 34677888899999999999 9999999999988
Q ss_pred EEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCC---------CeEEEEecccCCceEEEEecCCCEEEEE-eCCc
Q 046773 377 CRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEG---------GEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTN 445 (453)
Q Consensus 377 ~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~t---------G~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~ 445 (453)
..+..+...+. ..++++.++++++. ++|+|||+.+ ..++++|.+|.+. |+++++|+++|+|+ .|++
T Consensus 212 ~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~-V~~v~~d~~~l~s~s~Dg~ 288 (293)
T d1p22a2 212 RVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-VFRLQFDEFQIVSSSHDDT 288 (293)
T ss_dssp EEECCCSSCEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC-CCCEEECSSCEEECCSSSE
T ss_pred eeecccceeee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCC-EEEEEEcCCEEEEEecCCE
Confidence 88877665543 34567788888777 9999999754 4678999999999 99999999999999 9999
Q ss_pred EEEEe
Q 046773 446 IHLWD 450 (453)
Q Consensus 446 IklWD 450 (453)
|+|||
T Consensus 289 i~iWD 293 (293)
T d1p22a2 289 ILIWD 293 (293)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99998
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-34 Score=276.12 Aligned_cols=288 Identities=13% Similarity=0.144 Sum_probs=213.5
Q ss_pred CCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-CCeEEEEeCCCCEEE
Q 046773 138 DVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDIHV 216 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIkv 216 (453)
||. +.| ++|++|++++|||||.|++|||||+.+++++++|.+|.. .|.+++|+ +..|++||.|++|++
T Consensus 10 GH~--~~v-itc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~--------~V~~l~~s~~~~l~s~s~D~~i~i 78 (355)
T d1nexb2 10 GHM--TSV-ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG--------GVWALKYAHGGILVSGSTDRTVRV 78 (355)
T ss_dssp CCS--SSC-EEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSS--------CEEEEEEETTTEEEEEETTCCEEE
T ss_pred CcC--CCc-EEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC--------CEEEEEEcCCCEEEEEeccccccc
Confidence 998 556 579999999999999999999999999999999999764 68889986 568999999999999
Q ss_pred EEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccc---------cCCcceeee
Q 046773 217 AVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDL---------TDHNTVMGW 287 (453)
Q Consensus 217 Wd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l---------~~~~~v~~w 287 (453)
|++.. ....................++++++. |++++.|++|++||++++........ .........
T Consensus 79 w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (355)
T d1nexb2 79 WDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKY---IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154 (355)
T ss_dssp EETTT-TEEEEEECCCSSCEEEEEEEEETTEEE---EEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred ccccc-cccccccccccccccccccccccccce---eeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence 99876 211111111000001123567888775 78999999999999998762211000 000000001
Q ss_pred eeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEE
Q 046773 288 RMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIV 367 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~I 367 (453)
.....|...+.....+++.++.++.|+.|++||+++++.+....++........+++++..+++++.|+ +++|
T Consensus 155 ~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-------~i~i 227 (355)
T d1nexb2 155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT-------TIRI 227 (355)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS-------CEEE
T ss_pred eeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccc-------eEEe
Confidence 223445556666666666667778889999999999877766666666666777889999999999999 9999
Q ss_pred EEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE---EEecCCCEEEEEeC
Q 046773 368 RRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI---AFVGDDRHVAASCG 443 (453)
Q Consensus 368 w~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~---a~s~d~~~lasg~D 443 (453)
|+..+++++..+..|...+..+.+ ++.++++++. ++|++||+.++++.. .+|... +. ++++++++|++|.|
T Consensus 228 ~d~~~~~~~~~~~~h~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-~~~~~~~~~~~~~l~~g~d 302 (355)
T d1nexb2 228 WDLENGELMYTLQGHTALVGLLRL--SDKFLVSAAADGSIRGWDANDYSRKF--SYHHTN-LSAITTFYVSDNILVSGSE 302 (355)
T ss_dssp EETTTCCEEEEECCCSSCCCEEEE--CSSEEEEECTTSEEEEEETTTCCEEE--EEECTT-CCCCCEEEECSSEEEEEET
T ss_pred eecccccccccccccccccccccc--ccceeeeeecccccccccccccceec--ccccCC-ceEEEEEcCCCCEEEEEeC
Confidence 999999999999988887877765 4578887776 999999999887654 446555 33 67889998888899
Q ss_pred CcEEEEecC
Q 046773 444 TNIHLWDFG 452 (453)
Q Consensus 444 ~~IklWDl~ 452 (453)
++|+|||+.
T Consensus 303 ~~i~vwd~~ 311 (355)
T d1nexb2 303 NQFNIYNLR 311 (355)
T ss_dssp TEEEEEETT
T ss_pred CEEEEEECC
Confidence 999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-34 Score=280.72 Aligned_cols=269 Identities=10% Similarity=0.162 Sum_probs=213.3
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEE-----ecCCCCCccccccceEEEEEEc--CCeEEEE
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRT-----FRPQHSDRLGQFSRAVSGIIIT--DSQLIFA 208 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~t-----l~gh~~~~~~~~s~~V~~i~f~--g~~Lasg 208 (453)
+|.++ |+|++|++ ++||||+ |++|||||+.+++.... ..+|. ..|.+++|+ ++.|++|
T Consensus 49 ~H~~~----V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~--------~~I~~v~~s~dg~~l~s~ 115 (337)
T d1gxra_ 49 NHGEV----VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD--------NYIRSCKLLPDGCTLIVG 115 (337)
T ss_dssp CCSSC----CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT--------SBEEEEEECTTSSEEEEE
T ss_pred CCCCc----EEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCC--------CcEEEEEEcCCCCEEEEe
Confidence 68855 78999986 5999998 89999999988754322 22333 268888884 6789999
Q ss_pred eCCCCEEEEEeecCC---cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCccee
Q 046773 209 TLDGDIHVAVIDDVA---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVM 285 (453)
Q Consensus 209 S~D~tIkvWd~~~~g---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~ 285 (453)
+.|++|++||+.... ...+..|...+. .++|+|++.. |++++.|++|++||+.+++..
T Consensus 116 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~---l~s~~~d~~i~~~~~~~~~~~------------ 176 (337)
T d1gxra_ 116 GEASTLSIWDLAAPTPRIKAELTSSAPACY----ALAISPDSKV---CFSCCSDGNIAVWDLHNQTLV------------ 176 (337)
T ss_dssp ESSSEEEEEECCCC--EEEEEEECSSSCEE----EEEECTTSSE---EEEEETTSCEEEEETTTTEEE------------
T ss_pred eccccccccccccccccccccccccccccc----cccccccccc---ccccccccccccccccccccc------------
Confidence 999999999987521 223333443332 4789999986 789999999999999998843
Q ss_pred eeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcc
Q 046773 286 GWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRR 363 (453)
Q Consensus 286 ~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~ 363 (453)
....+|...|.+++|++++ +++++.|++|++||+++++++... .+...+...+++++++.+++++.++
T Consensus 177 --~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~------- 246 (337)
T d1gxra_ 177 --RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESS------- 246 (337)
T ss_dssp --EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTS-------
T ss_pred --ccccccccccccccccccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceecccc-------
Confidence 2345788899999999775 455567899999999998766543 3444455556778888999999999
Q ss_pred eEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEE
Q 046773 364 LAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAA 440 (453)
Q Consensus 364 ~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~las 440 (453)
.+++|++++++.. ....|.+.+..+.+++++.++++++. ++|+|||+.+++++.++. |.+. |. +|+||+++|++
T Consensus 247 ~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~-v~~~~~s~d~~~l~t 323 (337)
T d1gxra_ 247 NVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSS-VLSCDISVDDKYIVT 323 (337)
T ss_dssp CEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC-EEEEEECTTSCEEEE
T ss_pred ccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCC-EEEEEEeCCCCEEEE
Confidence 9999999988765 34567778999999999999998887 999999999999998875 6677 77 67899999999
Q ss_pred E-eCCcEEEEec
Q 046773 441 S-CGTNIHLWDF 451 (453)
Q Consensus 441 g-~D~~IklWDl 451 (453)
+ .|++|+|||+
T Consensus 324 ~s~D~~I~vWdl 335 (337)
T d1gxra_ 324 GSGDKKATVYEV 335 (337)
T ss_dssp EETTSCEEEEEE
T ss_pred EeCCCeEEEEEE
Confidence 9 9999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.1e-34 Score=280.28 Aligned_cols=279 Identities=15% Similarity=0.203 Sum_probs=210.3
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCcc----------ccccceEEEEEEc--CC
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRL----------GQFSRAVSGIIIT--DS 203 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~----------~~~s~~V~~i~f~--g~ 203 (453)
+|+++ |+|++||+ ++||||+ |++|||||+.+++++.++..+..... ..+...|.+++|+ ++
T Consensus 60 ~H~~~----V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ 134 (388)
T d1erja_ 60 DHTSV----VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 134 (388)
T ss_dssp ECSSC----CCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred CCCCc----EEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence 68854 89999986 6999997 89999999999999999976532100 1122358888885 67
Q ss_pred eEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCC
Q 046773 204 QLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDH 281 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~ 281 (453)
.|++|+.|++|++||... + .....+|...+. .++|++++.. +++|+.|+.|++||.++.....
T Consensus 135 ~l~s~~~dg~v~i~~~~~-~~~~~~~~~h~~~v~----~~~~~~~~~~---~~~~~~~~~i~~~d~~~~~~~~------- 199 (388)
T d1erja_ 135 FLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIY----SLDYFPSGDK---LVSGSGDRTVRIWDLRTGQCSL------- 199 (388)
T ss_dssp EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEE----EEEECTTSSE---EEEEETTSEEEEEETTTTEEEE-------
T ss_pred cceecccccccccccccc-ccccccccccccccc----cccccccccc---ccccccceeeeeeecccccccc-------
Confidence 899999999999999877 4 344455655543 4789999885 7799999999999999887321
Q ss_pred cceeeeeeeeeeccceeEEEEcC-Cc--eEEEEcCCcEEEEECCCCceEEEE-------eeccCCeEEEEEEecCCEEEE
Q 046773 282 NTVMGWRMLTEFTEFVGRVRVTS-HE--SAVACTSSRVITFDLRNQGMVLGE-------RGYGRGLYVTSVDVNAEAYIV 351 (453)
Q Consensus 282 ~~v~~w~~l~~h~~~v~~v~~s~-~~--~~vas~d~tIrlWDl~t~~~~~~~-------~g~~~~~~v~~~~~~g~~l~s 351 (453)
.. .+.....++.+.+ ++ +++++.|++|++||++++..+... .+|...+...+++++++.+++
T Consensus 200 -------~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 271 (388)
T d1erja_ 200 -------TL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271 (388)
T ss_dssp -------EE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred -------cc-ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEE
Confidence 11 1223344555543 33 455577899999999998765543 234444545556778889999
Q ss_pred EeCCCccccCcceEEEEEcCCCe------------eEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEE
Q 046773 352 VENRELENQNRRLAIVRRVDTFE------------EVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMY 418 (453)
Q Consensus 352 ~s~dg~~~~~~~~i~Iw~~~tg~------------~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~ 418 (453)
++.|+ .++||++.+++ +......|...+..+.+++++.++++++. ++|+|||+.+++++.
T Consensus 272 ~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~ 344 (388)
T d1erja_ 272 GSLDR-------SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344 (388)
T ss_dssp EETTS-------EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred EECCC-------cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence 99999 99999987653 33445556677899999999999998887 999999999999999
Q ss_pred EecccCCceEEEE--------ecCCCEEEEE-eCCcEEEEecC
Q 046773 419 SFRERIGEEVIAF--------VGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 419 tL~gh~~~~V~a~--------s~d~~~lasg-~D~~IklWDl~ 452 (453)
+|++|.+. |.++ +||+++|||| .|++|+|||+.
T Consensus 345 ~l~~H~~~-V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 345 MLQGHRNS-VISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEECCSSC-EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEeCCCCC-EEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99999998 7743 5799999999 99999999984
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.9e-33 Score=264.95 Aligned_cols=272 Identities=13% Similarity=0.097 Sum_probs=212.8
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDG 212 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~ 212 (453)
+||.++ |+|++|++ ++|||||.|++|+|||+.++++++++.+|.. .|.+++|+ +..+++|+.|+
T Consensus 52 ~GH~~~----I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~--------~v~~v~~~~~~~~l~~~~~d~ 119 (340)
T d1tbga_ 52 RGHLAK----IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS--------WVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CCCSSC----EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCS--------CEEEEEECTTSSEEEEEETTC
T ss_pred CCCCCC----EEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccc--------cEEeeEeeccceeeeeecccc
Confidence 399955 89999986 5999999999999999999999999998654 57888885 67899999999
Q ss_pred CEEEEEeecCC-----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee
Q 046773 213 DIHVAVIDDVA-----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW 287 (453)
Q Consensus 213 tIkvWd~~~~g-----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w 287 (453)
++++|+..... ...+.+|..... .....++ . .+.....|.+.+.|+..+.....
T Consensus 120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~------------- 178 (340)
T d1tbga_ 120 ICSIYNLKTREGNVRVSRELAGHTGYLS----CCRFLDD-N---QIVTSSGDTTCALWDIETGQQTT------------- 178 (340)
T ss_dssp CEEEEESSSSCSCCCEEEEECCCSSCEE----EEEEEET-T---EEEEEETTTEEEEEETTTTEEEE-------------
T ss_pred eeecccccccccccccceeccccccccc----ccccccc-c---ccccccccccccccccccccccc-------------
Confidence 99999976522 112223332211 1222222 2 25677889999999988766321
Q ss_pred eeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 288 RMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
....+...+....+.+.. .++++.|++|++||+++++++.++.+|...+...+++|+++.+++++.|+ ++
T Consensus 179 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~-------~i 250 (340)
T d1tbga_ 179 -TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA-------TC 250 (340)
T ss_dssp -EEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-------CE
T ss_pred -cccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCC-------eE
Confidence 122344556666666554 34556789999999999988777777776666667788889999999999 99
Q ss_pred EEEEcCCCeeEEEEEec--CCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEE
Q 046773 366 IVRRVDTFEEVCRFSLR--ADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAA 440 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~--~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~las 440 (453)
++|+....+.+..+... ...+..+.+++++.++++++. ++|+|||+.+++++.+|.+|.+. |+ +|+||+++|+|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~-V~~l~~s~d~~~l~s 329 (340)
T d1tbga_ 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVAT 329 (340)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSCEEE
T ss_pred EEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCC-EEEEEEeCCCCEEEE
Confidence 99999998887766433 344888999999999998887 99999999999999999999998 88 67899999999
Q ss_pred E-eCCcEEEEe
Q 046773 441 S-CGTNIHLWD 450 (453)
Q Consensus 441 g-~D~~IklWD 450 (453)
| .|++|+|||
T Consensus 330 ~s~Dg~v~iWd 340 (340)
T d1tbga_ 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EccCCEEEEeC
Confidence 9 999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.5e-33 Score=272.56 Aligned_cols=268 Identities=8% Similarity=-0.015 Sum_probs=217.1
Q ss_pred EEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC
Q 046773 148 RCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA 223 (453)
Q Consensus 148 ~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g 223 (453)
.++++++ +.||.++ ++.|.+||+++++..+.|.+|.. .|.+++|+ |+.||+|+.|++|+|||+....
T Consensus 21 ~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~--------~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~ 91 (311)
T d1nr0a1 21 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSH--------QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 91 (311)
T ss_dssp CCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSS--------CEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred EEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCC--------CEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence 4667765 6888886 66799999999999999998764 57888874 7899999999999999998732
Q ss_pred ---cceEEeeecceecCceEEEEeCCCceeeEEEEeeC--CCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 224 ---NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLA--GRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 224 ---~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~--D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
...+..|.+.|. .|+|+|++++ |++++. |..++|||+++++.. +++.+|.+.|.
T Consensus 92 ~~~~~~~~~~~~~v~----~v~~s~d~~~---l~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~h~~~v~ 150 (311)
T d1nr0a1 92 HILKTTIPVFSGPVK----DISWDSESKR---IAAVGEGRERFGHVFLFDTGTSN--------------GNLTGQARAMN 150 (311)
T ss_dssp CCEEEEEECSSSCEE----EEEECTTSCE---EEEEECCSSCSEEEEETTTCCBC--------------BCCCCCSSCEE
T ss_pred cccccccccccCccc----cccccccccc---ccccccccccccccccccccccc--------------ccccccccccc
Confidence 133455665553 4899999997 566664 567999999998742 35678899999
Q ss_pred EEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee
Q 046773 299 RVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE 375 (453)
Q Consensus 299 ~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~ 375 (453)
+|+|+|++ +++++.|++|++||++++++.....+|...+....++|+++.+++++.|+ .++||+..+++.
T Consensus 151 ~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~-------~v~~~d~~~~~~ 223 (311)
T d1nr0a1 151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG-------TIVLYNGVDGTK 223 (311)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-------CEEEEETTTCCE
T ss_pred cccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccc-------cccccccccccc
Confidence 99999865 23456789999999999877666677776666667788899999999999 999999999888
Q ss_pred EEEEEe-------cCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCc--eEEEEecCCCEEEEE-eCC
Q 046773 376 VCRFSL-------RADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGE--EVIAFVGDDRHVAAS-CGT 444 (453)
Q Consensus 376 v~~l~~-------~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~--~V~a~s~d~~~lasg-~D~ 444 (453)
+..+.. |...|..+.+++++.++++++. ++|||||+++++++++|+.|... .+.++.+++..|+++ .||
T Consensus 224 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG 303 (311)
T d1nr0a1 224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303 (311)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred cccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCC
Confidence 776643 4566889999999999998887 99999999999999999877542 255788888889888 999
Q ss_pred cEEEEecC
Q 046773 445 NIHLWDFG 452 (453)
Q Consensus 445 ~IklWDl~ 452 (453)
.|++||.+
T Consensus 304 ~i~~wd~d 311 (311)
T d1nr0a1 304 FINFVNPE 311 (311)
T ss_dssp CEEEEETT
T ss_pred EEEEEeCC
Confidence 99999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9e-33 Score=263.95 Aligned_cols=272 Identities=13% Similarity=0.124 Sum_probs=201.0
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCC-eEEEEeCCCC
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDS-QLIFATLDGD 213 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~-~LasgS~D~t 213 (453)
.||..+ |+||+|++ ++|||||.|++|||||++++++++++...|. ..|.+++|+++ .+++++.|++
T Consensus 9 ~GH~~~----V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~-------~~v~~v~~~~~g~~~~~~~d~~ 77 (299)
T d1nr0a2 9 YGHNKA----ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA-------TMITGIKTTSKGDLFTVSWDDH 77 (299)
T ss_dssp CCCSSC----EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS-------SCEEEEEECTTSCEEEEETTTE
T ss_pred CCCCCC----cEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC-------CcEEEEEeeccceeecccceee
Confidence 399955 89999986 5999999999999999999999999864333 26888998643 5788899999
Q ss_pred EEEEEeecCCcce----EEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 214 IHVAVIDDVANET----RTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 214 IkvWd~~~~g~~~----~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
+++|+........ ...+...+ ..++|+|+|+. +++ +.++.+++|+.......
T Consensus 78 v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~g~~---~~~-~~~~~i~~~~~~~~~~~---------------- 133 (299)
T d1nr0a2 78 LKVVPAGGSGVDSSKAVANKLSSQP----LGLAVSADGDI---AVA-ACYKHIAIYSHGKLTEV---------------- 133 (299)
T ss_dssp EEEECSSSSSSCTTSCCEEECSSCE----EEEEECTTSSC---EEE-EESSEEEEEETTEEEEE----------------
T ss_pred EEEeccCCccccccccccccccccc----ccccccccccc---ccc-ccccccccccccccccc----------------
Confidence 9999986522111 11222222 24899999985 344 45679999995432211
Q ss_pred eeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEE-EeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEE
Q 046773 290 LTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLG-ERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~-~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~ 366 (453)
. ....+.+++|+|++. ++++.|+.|++||++++++... ...|...+...+++++++.+++++.++ .++
T Consensus 134 ~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~ 204 (299)
T d1nr0a2 134 P--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR-------KVI 204 (299)
T ss_dssp E--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS-------CEE
T ss_pred c--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccc
Confidence 1 123466788998764 4556789999999998765432 245655555566777888999999999 999
Q ss_pred EEEcCCCeeE---EEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEE--EEecccCCceEE-EEecCCCEEE
Q 046773 367 VRRVDTFEEV---CRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYM--YSFRERIGEEVI-AFVGDDRHVA 439 (453)
Q Consensus 367 Iw~~~tg~~v---~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l--~tL~gh~~~~V~-a~s~d~~~la 439 (453)
+|+..++..+ ..+..|...+..+.++|++.++++++. ++|+|||+++++.. .....|....|. .+.+++++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 284 (299)
T d1nr0a2 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV 284 (299)
T ss_dssp EEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEE
T ss_pred cccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEE
Confidence 9999887543 344556777999999999999998887 99999999987543 333455544376 4567888999
Q ss_pred EE-eCCcEEEEecC
Q 046773 440 AS-CGTNIHLWDFG 452 (453)
Q Consensus 440 sg-~D~~IklWDl~ 452 (453)
|+ .|++|||||+.
T Consensus 285 s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 285 SAGQDSNIKFWNVP 298 (299)
T ss_dssp EEETTSCEEEEECC
T ss_pred EEeCCCEEEEEecc
Confidence 88 99999999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.7e-32 Score=268.34 Aligned_cols=272 Identities=10% Similarity=0.109 Sum_probs=202.5
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCe--EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRL--HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~--~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~ 220 (453)
|+|++|++ ++||+|+.|++|+|||+++++ ++.+|++|.. .|.+|+|+ +.+|++||.|++|+|||+.
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~--------~V~~l~fsp~~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG--------QVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS--------CEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCC--------CEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence 78999986 699999999999999999886 7888998765 68888875 7789999999999999998
Q ss_pred cCC-cceE--EeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccc
Q 046773 221 DVA-NETR--TAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 221 ~~g-~~~~--~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
+.. ...+ ..|...+. .++|+|++++ |++|+.|++|+||+++... ... .-.....|.+.
T Consensus 82 ~~~~~~~~~~~~~~~~v~----~i~~~p~~~~---l~~~s~d~~i~i~~~~~~~~~~~-----------~~~~~~~~~~~ 143 (371)
T d1k8kc_ 82 GRTWKPTLVILRINRAAR----CVRWAPNEKK---FAVGSGSRVISICYFEQENDWWV-----------CKHIKKPIRST 143 (371)
T ss_dssp TTEEEEEEECCCCSSCEE----EEEECTTSSE---EEEEETTSSEEEEEEETTTTEEE-----------EEEECTTCCSC
T ss_pred cccccccccccccccccc----cccccccccc---ceeecccCcceeeeeeccccccc-----------ccccccccccc
Confidence 621 1222 22333332 4899999996 8899999999999988765 110 01234577889
Q ss_pred eeEEEEcCCce--EEEEcCCcEEEEECCCCc------------------eEEEEeeccCCeEEEEEEecCCEEEEEeCCC
Q 046773 297 VGRVRVTSHES--AVACTSSRVITFDLRNQG------------------MVLGERGYGRGLYVTSVDVNAEAYIVVENRE 356 (453)
Q Consensus 297 v~~v~~s~~~~--~vas~d~tIrlWDl~t~~------------------~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg 356 (453)
|.+++|+|++. ++++.|++|++||+.... ++....+|...+...+|+|+++.+++++.|+
T Consensus 144 v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~ 223 (371)
T d1k8kc_ 144 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 223 (371)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred cccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC
Confidence 99999999774 445678999999986532 2222244544455566788899999999999
Q ss_pred ccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEE--EECCCCeEEEE--e------------
Q 046773 357 LENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRV--WEVEGGEYMYS--F------------ 420 (453)
Q Consensus 357 ~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrl--WD~~tG~~l~t--L------------ 420 (453)
+++|||+.+++++..+..|...+.++.|++++..+++++++.+++ ||..++++... +
T Consensus 224 -------~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (371)
T d1k8kc_ 224 -------TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 296 (371)
T ss_dssp -------EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred -------cceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCcccccccccc
Confidence 999999999999999998888899999999887766665665555 45444333110 0
Q ss_pred -------------------------cccCCceEEEE--ecCC----CEEEEE-eCCcEEEEecC
Q 046773 421 -------------------------RERIGEEVIAF--VGDD----RHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 421 -------------------------~gh~~~~V~a~--s~d~----~~lasg-~D~~IklWDl~ 452 (453)
..|.+. |+++ .+++ ..|+|+ .|++|+|||+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~-I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 297 ARERFQNLDKKASSEGSAAAGAGLDSLHKNS-VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359 (371)
T ss_dssp HHHHHHHCCCCC---------CCCSSSSSSC-EEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred ceeeEecccceeEEeccccccceecccccCC-EEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence 126666 7754 3322 368888 99999999974
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.1e-30 Score=261.80 Aligned_cols=279 Identities=9% Similarity=0.019 Sum_probs=185.1
Q ss_pred CCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEE------EEecCCCCCccccc-cceEEEEEEc---CCeEE
Q 046773 137 SDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHV------RTFRPQHSDRLGQF-SRAVSGIIIT---DSQLI 206 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~------~tl~gh~~~~~~~~-s~~V~~i~f~---g~~La 206 (453)
+||..+ |+|+++++++|+|+|.|++|||||..+.+.. .....|.. +.+ ......+..+ ...++
T Consensus 11 ~~H~~~----I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 83 (393)
T d1sq9a_ 11 KAHDAD----IFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS---GLHHVDVLQAIERDAFELCLVA 83 (393)
T ss_dssp SCSSSC----EEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT---CEEEEEEEEEEETTTEEEEEEE
T ss_pred CcccCc----cEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccC---CceEeeeEeeeccCCCCCcEEE
Confidence 599854 7899999999999999999999998876521 11112211 111 0112222322 24678
Q ss_pred EEeCCCCEEEEEeecCC-cceEEeeecce-----ec-CceEEEEeCCCc--eeeEEEEeeCCCeEEEeeCCCCc----EE
Q 046773 207 FATLDGDIHVAVIDDVA-NETRTAHFGSV-----MD-DGVLIDFTGCSR--YWVGLYAGLAGRAFHIWDRQAEE----VF 273 (453)
Q Consensus 207 sgS~D~tIkvWd~~~~g-~~~~~~~~~~v-----~~-~~~~v~Fs~dg~--~~~~LaSgS~D~tIrvWD~~tg~----~~ 273 (453)
+++.|++|++|++.... ......+...+ .. +...+++.+++. ....|++++.|++|+|||+.... .+
T Consensus 84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence 99999999999986522 22222221111 00 112355655532 11247899999999999986432 00
Q ss_pred ecccccCCcceeeeeeeeeeccceeEEEEcCCceEE-EEcCCcEEEEECCCCceEEEE------eeccCCeEEEEEEecC
Q 046773 274 VGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV-ACTSSRVITFDLRNQGMVLGE------RGYGRGLYVTSVDVNA 346 (453)
Q Consensus 274 ~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v-as~d~tIrlWDl~t~~~~~~~------~g~~~~~~v~~~~~~g 346 (453)
..+................+...+.+|+|+|++.++ ++.|++|||||+++++++... .+|...+...+|+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 164 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243 (393)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence 000000000000001223445678899999987654 456799999999998776543 3455555556678889
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-------------ecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-------------LRADRNVNVMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-------------~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
+.+++++.|+ ....|+|||+++++++.++. +|.+.|.++.|+|++.++++++. ++|||||++
T Consensus 244 ~~l~sgs~D~----t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 244 SLLAIAHDSN----SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 319 (393)
T ss_dssp TEEEEEEEET----TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred ceeeeecCCC----CcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence 9999999886 11248999999998888774 57788999999999999998887 999999999
Q ss_pred CCeEEEEecccCCc
Q 046773 413 GGEYMYSFRERIGE 426 (453)
Q Consensus 413 tG~~l~tL~gh~~~ 426 (453)
+|+|+++|+||.+.
T Consensus 320 ~g~~~~~l~gH~~~ 333 (393)
T d1sq9a_ 320 TKERITTLNMHCDD 333 (393)
T ss_dssp TTEEEEEEECCGGG
T ss_pred CCCEEEEECCcCCc
Confidence 99999999999654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=2.9e-29 Score=245.19 Aligned_cols=236 Identities=15% Similarity=0.135 Sum_probs=184.5
Q ss_pred CCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEE--EEecCCCCCccccccceEEEEEEc--CCeEEEEeC-
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHV--RTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATL- 210 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~--~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~- 210 (453)
||.++ |+|++|++ ++||||+.|++|+|||+.+++++ .++.+|.. .|.+++|+ +..|++++.
T Consensus 56 ~H~~~----v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~d~~~l~~~~~~ 123 (311)
T d1nr0a1 56 EHSHQ----TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG--------PVKDISWDSESKRIAAVGEG 123 (311)
T ss_dssp CCSSC----EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS--------CEEEEEECTTSCEEEEEECC
T ss_pred CCCCC----EEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccC--------cccccccccccccccccccc
Confidence 89855 89999976 69999999999999999998754 55777653 58888886 567888876
Q ss_pred -CCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 211 -DGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 211 -D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
|+.++||++++.. ..++.+|...|. .|+|+|++++ .|++|+.|++|+|||+++++.. .
T Consensus 124 ~~~~~~v~~~~~~~~~~~l~~h~~~v~----~v~~~~~~~~--~l~sgs~d~~i~i~d~~~~~~~--------------~ 183 (311)
T d1nr0a1 124 RERFGHVFLFDTGTSNGNLTGQARAMN----SVDFKPSRPF--RIISGSDDNTVAIFEGPPFKFK--------------S 183 (311)
T ss_dssp SSCSEEEEETTTCCBCBCCCCCSSCEE----EEEECSSSSC--EEEEEETTSCEEEEETTTBEEE--------------E
T ss_pred ccccccccccccccccccccccccccc----ccccccccee--eecccccccccccccccccccc--------------c
Confidence 4569999998722 456667766553 4899999986 4789999999999999998843 2
Q ss_pred eeeeeccceeEEEEcCCce--EEEEcCCcEEEEECCCCceEEEE-------eeccCCeEEEEEEecCCEEEEEeCCCccc
Q 046773 289 MLTEFTEFVGRVRVTSHES--AVACTSSRVITFDLRNQGMVLGE-------RGYGRGLYVTSVDVNAEAYIVVENRELEN 359 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~~~--~vas~d~tIrlWDl~t~~~~~~~-------~g~~~~~~v~~~~~~g~~l~s~s~dg~~~ 359 (453)
.+.+|..+|.++.++|++. ++++.|++|++||+.++..+..+ .+|...+...+|+++++.+++++.|+
T Consensus 184 ~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg--- 260 (311)
T d1nr0a1 184 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK--- 260 (311)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS---
T ss_pred ccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCC---
Confidence 4567889999999998764 44567899999999998766543 24555555556777889999999999
Q ss_pred cCcceEEEEEcCCCeeEEEEEecCCC-eeEEEEeeCCCeEEEEeC-CeEEEEECC
Q 046773 360 QNRRLAIVRRVDTFEEVCRFSLRADR-NVNVMGCMNQGYALMCVE-GVIRVWEVE 412 (453)
Q Consensus 360 ~~~~~i~Iw~~~tg~~v~~l~~~~~~-v~~~~~~~~~~~lls~s~-~tIrlWD~~ 412 (453)
+++|||.+++++++++..+... ...+.+.+++.++++++. |.|++||++
T Consensus 261 ----~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 261 ----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp ----EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred ----eEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 9999999999999988766432 223344556778888777 999999975
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.7e-29 Score=237.62 Aligned_cols=274 Identities=13% Similarity=0.148 Sum_probs=194.2
Q ss_pred CCCCCCCeEEEEEEecC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCE
Q 046773 138 DVDNPDGLTCRCLTLSD-LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDI 214 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~-~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tI 214 (453)
||..+ |+|++|++ .+|+|||.|++|++|++.+.++......+... .......+ ++..+++++.|++|
T Consensus 51 ~H~~~----V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~~i 120 (355)
T d1nexb2 51 GHDGG----VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNST------VRCLDIVEYKNIKYIVTGSRDNTL 120 (355)
T ss_dssp CCSSC----EEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSC------EEEEEEEEETTEEEEEEEETTSEE
T ss_pred CCCCC----EEEEEEcCCCEEEEEeccccccccccccccccccccccccc------ccccccccccccceeeeecCCCcE
Confidence 89855 89999986 69999999999999999999998877643321 11222333 35679999999999
Q ss_pred EEEEeecCC-cce--------EEeeec----ce-----ecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecc
Q 046773 215 HVAVIDDVA-NET--------RTAHFG----SV-----MDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGG 276 (453)
Q Consensus 215 kvWd~~~~g-~~~--------~~~~~~----~v-----~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~ 276 (453)
++||+.+.. ... ...... .. ........+.++++. ++++..|+.|++||+++++.+
T Consensus 121 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~d~~i~~~d~~~~~~~--- 194 (355)
T d1nexb2 121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI---VVSGSYDNTLIVWDVAQMKCL--- 194 (355)
T ss_dssp EEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTE---EEEEETTSCEEEEETTTTEEE---
T ss_pred EEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccce---eeeecccceeeeeecccccce---
Confidence 999987611 000 000000 00 000112355666664 788999999999999998843
Q ss_pred cccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeC
Q 046773 277 DLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVEN 354 (453)
Q Consensus 277 ~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~ 354 (453)
....++...+.++.+++.. +++++.|++|++||++++.++..+.+|. ..|.++.++++.+++++.
T Consensus 195 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~~~~~l~~~~~ 261 (355)
T d1nexb2 195 -----------YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT--ALVGLLRLSDKFLVSAAA 261 (355)
T ss_dssp -----------EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCCCEEEECSSEEEEECT
T ss_pred -----------eeeeccccccccccccccceeeecccccceEEeeecccccccccccccc--ccccccccccceeeeeec
Confidence 1234555667788888755 4556778999999999998877776664 456788889999999999
Q ss_pred CCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEE-eeCCCeEEEEeCCeEEEEECCCCeEEE-EecccCCceEEEEe
Q 046773 355 RELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMG-CMNQGYALMCVEGVIRVWEVEGGEYMY-SFRERIGEEVIAFV 432 (453)
Q Consensus 355 dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~-~~~~~~lls~s~~tIrlWD~~tG~~l~-tL~gh~~~~V~a~s 432 (453)
|+ +|+|||+++++.. +..|...+..+.+ ++++..++++++++|+|||+++|++++ .+.+|.+. |++++
T Consensus 262 dg-------~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~-V~~v~ 331 (355)
T d1nexb2 262 DG-------SIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQ-IWSVN 331 (355)
T ss_dssp TS-------EEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSE-EEEEE
T ss_pred cc-------cccccccccccee--cccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCC-EEEEE
Confidence 99 9999999987644 4556655665544 445555555556999999999999996 46788888 98655
Q ss_pred cCCC-EEEEE-eCCcEEEEe
Q 046773 433 GDDR-HVAAS-CGTNIHLWD 450 (453)
Q Consensus 433 ~d~~-~lasg-~D~~IklWD 450 (453)
++++ .|+++ .||+++||.
T Consensus 332 ~~~~~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 332 FKGKTLVAAVEKDGQSFLEI 351 (355)
T ss_dssp EETTEEEEEEESSSCEEEEE
T ss_pred EcCCeEEEEEECCCcEEEEE
Confidence 4444 45566 899866553
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.5e-29 Score=246.18 Aligned_cols=272 Identities=11% Similarity=0.069 Sum_probs=200.5
Q ss_pred EEEEEecC--CEEEEEeCCC-cEEEEECCCC--eEEEEecCCCCCccccccceEEEEEEc----CCeEEEEeCCCCEEEE
Q 046773 147 CRCLTLSD--LYLACGFADG-AVRLFDLTTR--LHVRTFRPQHSDRLGQFSRAVSGIIIT----DSQLIFATLDGDIHVA 217 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~-TIrlWD~~tg--~~~~tl~gh~~~~~~~~s~~V~~i~f~----g~~LasgS~D~tIkvW 217 (453)
+.+++|++ +.||.++.+. .|+.||.... ..+.++.+|+.. .|.+++|+ +..|+||+.|++|+||
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~-------~v~~v~fsP~~~g~~lasgs~Dg~i~iW 92 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSS-------VVTTVKFSPIKGSQYLCSGDESGKVIVW 92 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTS-------CEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCC-------CEEEEEEeeCCCCCEEEEEeCCCCEEEe
Confidence 46888875 6888887664 4788886554 457788887642 58888884 4689999999999999
Q ss_pred EeecCC-cceEEe--------eecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 218 VIDDVA-NETRTA--------HFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 218 d~~~~g-~~~~~~--------~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
|+.... ...+.. |.+.+. .|+|+++|+.+. .++++.|+.+++|+.++++.+ .
T Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~v~----~v~~s~~~~~l~-~~~~~~~~~~~~~~~~~~~~~--------------~ 153 (325)
T d1pgua1 93 GWTFDKESNSVEVNVKSEFQVLAGPIS----DISWDFEGRRLC-VVGEGRDNFGVFISWDSGNSL--------------G 153 (325)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEE----EEEECTTSSEEE-EEECCSSCSEEEEETTTCCEE--------------E
T ss_pred eecCCcceeeeecccccccccccCcEE----EEEECCCCCccc-eeeccccceEEEEeecccccc--------------e
Confidence 997621 222222 223322 489999999732 233346789999999998853 3
Q ss_pred eeeeeccceeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEE--EEec-CCEEEEEeCCCccccC
Q 046773 289 MLTEFTEFVGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTS--VDVN-AEAYIVVENRELENQN 361 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~--~~~~-g~~l~s~s~dg~~~~~ 361 (453)
.+.+|..+|.++.|+|+. .++++.|+.|++||+.+.+..... ..+.+...|.+ |+|+ ++.+++++.|+
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~----- 228 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR----- 228 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC-----
T ss_pred eeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccccc-----
Confidence 467889999999999765 344567899999999987655443 22334444555 5554 46788899999
Q ss_pred cceEEEEEcCCCeeEEEEEecCCCeeEEEEe---eCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCc---eEEEEec-
Q 046773 362 RRLAIVRRVDTFEEVCRFSLRADRNVNVMGC---MNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGE---EVIAFVG- 433 (453)
Q Consensus 362 ~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~---~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~---~V~a~s~- 433 (453)
.|+|||..+++++.++..|...+..+.++ +++.++++++. ++|||||+++++++.++..|... ...++.+
T Consensus 229 --~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (325)
T d1pgua1 229 --KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306 (325)
T ss_dssp --CEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred --ceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEEC
Confidence 99999999999999998887777666665 57888888887 99999999999999998876543 1225554
Q ss_pred CCCEEEEE-eCCcEEEEec
Q 046773 434 DDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 434 d~~~lasg-~D~~IklWDl 451 (453)
.+.+|+|+ .|++|+|||+
T Consensus 307 ~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 307 GNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ETTEEEEEETTSCEEEEET
T ss_pred CCCEEEEEECCCEEEEEEC
Confidence 34478888 8999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.3e-29 Score=237.15 Aligned_cols=258 Identities=10% Similarity=0.059 Sum_probs=190.4
Q ss_pred CCCCCCCCeEEEEEEecCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc-CCeEEEEeCCCCEE
Q 046773 137 SDVDNPDGLTCRCLTLSDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT-DSQLIFATLDGDIH 215 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~-g~~LasgS~D~tIk 215 (453)
.||..+ |+||+|++ |+|||.|++|++||+.+++ .+|.. .|.++++. +..++++|.|++|+
T Consensus 10 ~gH~~~----I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~-----~~h~~--------~V~~~~~~~~~~~~s~s~D~~v~ 70 (287)
T d1pgua2 10 SGHNKG----ITALTVNP--LISGSYDGRIMEWSSSSMH-----QDHSN--------LIVSLDNSKAQEYSSISWDDTLK 70 (287)
T ss_dssp CCCSSC----EEEEETTT--TEEEETTSCEEETTTTEEE-----CCCCS--------CEEEEECCSTTCCEEEETTTEEE
T ss_pred CCCCCc----eEEEEECc--EEEEeCCCeEEEEECCCCC-----CCCCC--------CEEEEEecCCCeEEEEeeccccc
Confidence 399966 89999998 9999999999999998764 45543 68888876 56789999999999
Q ss_pred EEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecc
Q 046773 216 VAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTE 295 (453)
Q Consensus 216 vWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~ 295 (453)
+|++... .+ .. ....+++++++.. ++ .+.+..+.+|+..+++... .+ .+..
T Consensus 71 ~w~~~~~---~~---~~----~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--------------~~-~~~~ 121 (287)
T d1pgua2 71 VNGITKH---EF---GS----QPKVASANNDGFT---AV-LTNDDDLLILQSFTGDIIK--------------SV-RLNS 121 (287)
T ss_dssp ETTEEEE---EC---SS----CEEEEEECSSSEE---EE-EETTSEEEEEETTTCCEEE--------------EE-ECSS
T ss_pred ccccccc---cc---cc----ceeeeeeccCCce---EE-Eeecccceeeeccceeeee--------------ec-cccc
Confidence 9998651 00 00 1123678888764 33 4567789999999888432 11 1224
Q ss_pred ceeEEEEcCCceEEEEcC-CcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCC
Q 046773 296 FVGRVRVTSHESAVACTS-SRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTF 373 (453)
Q Consensus 296 ~v~~v~~s~~~~~vas~d-~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg 373 (453)
++.++..+++.+++++.+ +.|++||+...+..... ..+.......+|++++..+++++.|+ .++||+..++
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-------~i~i~d~~~~ 194 (287)
T d1pgua2 122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG-------KILLYDLQSR 194 (287)
T ss_dssp CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS-------CEEEEETTTT
T ss_pred eeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccc-------cccceeeccc
Confidence 455666666667777776 57999999865544433 23444455567788889999999999 9999999988
Q ss_pred eeEEE-EEecCCCeeEEEEeeC----------CCeEEEEeC-CeEEEEECCC-CeEEEEecccCCceEE--EEecCCCEE
Q 046773 374 EEVCR-FSLRADRNVNVMGCMN----------QGYALMCVE-GVIRVWEVEG-GEYMYSFRERIGEEVI--AFVGDDRHV 438 (453)
Q Consensus 374 ~~v~~-l~~~~~~v~~~~~~~~----------~~~lls~s~-~tIrlWD~~t-G~~l~tL~gh~~~~V~--a~s~d~~~l 438 (453)
+.+.. +.+|...+..+.++|+ +.++++++. ++|+|||+++ ++++..+.+|.+. |+ +++|+++ |
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~-V~~v~~~~~~~-l 272 (287)
T d1pgua2 195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG-VNNLLWETPST-L 272 (287)
T ss_dssp EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC-EEEEEEEETTE-E
T ss_pred ccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCC-eEEEEECCCCE-E
Confidence 75443 4566666777777653 456777776 9999999987 6788889999999 88 4568764 6
Q ss_pred EEE-eCCcEEEEec
Q 046773 439 AAS-CGTNIHLWDF 451 (453)
Q Consensus 439 asg-~D~~IklWDl 451 (453)
+|+ .|++|||||+
T Consensus 273 ~s~g~D~~v~iW~i 286 (287)
T d1pgua2 273 VSSGADACIKRWNV 286 (287)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEEECCCeEEEEEE
Confidence 666 9999999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3.5e-28 Score=228.35 Aligned_cols=247 Identities=16% Similarity=0.179 Sum_probs=201.1
Q ss_pred EEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEE
Q 046773 167 RLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLID 242 (453)
Q Consensus 167 rlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~ 242 (453)
|.|-.. +....+|+||.. .|.+|+|+ ++.|+|||.|++|+|||+++ + +.++.+|...|. .++
T Consensus 1 k~w~p~-~~~~~~L~GH~~--------~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~~~h~~~V~----~~~ 66 (317)
T d1vyhc1 1 KEWIPR-PPEKYALSGHRS--------PVTRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQ----DIS 66 (317)
T ss_dssp CCCCCC-SSCSCEEECCSS--------CEEEEEECSSSSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEE----EEE
T ss_pred CccCCC-CCccEEEcCCCC--------CeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCcEE----EEe
Confidence 456543 445678999865 68889885 67899999999999999987 4 566777776654 489
Q ss_pred EeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEE
Q 046773 243 FTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFD 320 (453)
Q Consensus 243 Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWD 320 (453)
|+|++.. +++++.+.++.+|+....+.. ..+.+|...+.++.+++++ +++++.|+++++||
T Consensus 67 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (317)
T d1vyhc1 67 FDHSGKL---LASCSADMTIKLWDFQGFECI--------------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129 (317)
T ss_dssp ECTTSSE---EEEEETTSCCCEEETTSSCEE--------------ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred eeccccc---ccccccccccccccccccccc--------------cccccccccceeeeccCCCceEEeeccCcceeEee
Confidence 9999986 789999999999999887732 1245677888888998765 45556789999999
Q ss_pred CCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeC------
Q 046773 321 LRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMN------ 394 (453)
Q Consensus 321 l~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~------ 394 (453)
+++++.+..+.+|.......++++++..+++++.|+ ++++|+..+++.+..+..+...+..+.++++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-------~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 202 (317)
T d1vyhc1 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ-------TVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 202 (317)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-------CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGG
T ss_pred cccceeeeEEccCCCcceeeecccCCCEEEEEeCCC-------eEEEEeeccceeeEEEecCCCCceEEEEeecccccee
Confidence 999988777777777776677888899999999999 9999999999988888777766777666543
Q ss_pred --------------CCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 395 --------------QGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 395 --------------~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+..+++++. ++|++||+.+++++.++.+|... |. +++|++++|+++ .|++|+|||+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 277 (317)
T d1vyhc1 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVLFHSGGKFILSCADDKTLRVWDYK 277 (317)
T ss_dssp GGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC-EEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred eccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCC-EEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 234556665 99999999999999999999998 87 667999999999 99999999974
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.8e-28 Score=232.40 Aligned_cols=280 Identities=14% Similarity=0.090 Sum_probs=186.6
Q ss_pred CCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEec---CCCCCccccccceEEEEEEc---CCeEEEE
Q 046773 137 SDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFR---PQHSDRLGQFSRAVSGIIIT---DSQLIFA 208 (453)
Q Consensus 137 ~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~---gh~~~~~~~~s~~V~~i~f~---g~~Lasg 208 (453)
.+|. |+ |++|+|++ ++|||||.|++|||||++++.+...+. +|.. .|.+++|. +..|++|
T Consensus 8 ~~h~--d~--I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~--------~V~~v~f~~~~~~~l~sg 75 (342)
T d1yfqa_ 8 QAPK--DY--ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--------PLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp SCCS--SC--EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS--------CEEEEEEEESSSEEEEEE
T ss_pred CCCC--CC--EEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCC--------CEEEEEEeCCCCCEEEEc
Confidence 4898 55 89999986 699999999999999998776543332 3433 68888884 3479999
Q ss_pred eCCCCEEEEEeecCCc-ceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc---EEecccccCCcce
Q 046773 209 TLDGDIHVAVIDDVAN-ETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE---VFVGGDLTDHNTV 284 (453)
Q Consensus 209 S~D~tIkvWd~~~~g~-~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~---~~~g~~l~~~~~v 284 (453)
+.|++|++|++..... .....+... ......+.++... +++++.|+++++||++++. .+... +...
T Consensus 76 ~~d~~v~~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~wd~~~~~~~~~~~~~-~~~~--- 145 (342)
T d1yfqa_ 76 TVQGEILKVDLIGSPSFQALTNNEAN---LGICRICKYGDDK---LIAASWDGLIEVIDPRNYGDGVIAVKN-LNSN--- 145 (342)
T ss_dssp ETTSCEEEECSSSSSSEEECBSCCCC---SCEEEEEEETTTE---EEEEETTSEEEEECHHHHTTBCEEEEE-SCSS---
T ss_pred ccccceeeeecccccccccccccccc---ccccccccccccc---ccccccccccceeeccccccceeeecc-cccc---
Confidence 9999999999876221 111111111 1112344445443 7899999999999997654 21110 0000
Q ss_pred eeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEE---EeeccCCeEEEE-EEecCCEEEEEeCCCcccc
Q 046773 285 MGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLG---ERGYGRGLYVTS-VDVNAEAYIVVENRELENQ 360 (453)
Q Consensus 285 ~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~---~~g~~~~~~v~~-~~~~g~~l~s~s~dg~~~~ 360 (453)
..........+...+...++++.|++|++||+.+...... ...+........ +..++..+++++.++
T Consensus 146 -----~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---- 216 (342)
T d1yfqa_ 146 -----NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG---- 216 (342)
T ss_dssp -----SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS----
T ss_pred -----cccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCC----
Confidence 0001112223344455677788899999999987654322 122222222222 345567889999999
Q ss_pred CcceEEEEEcCCCee------EEEE---------EecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccC
Q 046773 361 NRRLAIVRRVDTFEE------VCRF---------SLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERI 424 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~------v~~l---------~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~ 424 (453)
.+.+|+++.... ...+ ..+...+..+.++|++.++++++. ++|+|||+++++++.++..+.
T Consensus 217 ---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~ 293 (342)
T d1yfqa_ 217 ---RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp ---EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred ---eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 999998774321 1111 112233678899999999998887 999999999999999997654
Q ss_pred CceEEEEecCCCEEEEE-eCCcEEEEe
Q 046773 425 GEEVIAFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 425 ~~~V~a~s~d~~~lasg-~D~~IklWD 450 (453)
...+.+|+|+++.|+++ .|.++++|.
T Consensus 294 ~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 294 EDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp SSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred CCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence 44388999999999988 888887774
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.3e-27 Score=230.84 Aligned_cols=232 Identities=15% Similarity=0.126 Sum_probs=182.8
Q ss_pred CCCCCCCCCeEEEEEEecC--CEEEEEeCCCcEEEEECC--CCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEe
Q 046773 136 PSDVDNPDGLTCRCLTLSD--LYLACGFADGAVRLFDLT--TRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFAT 209 (453)
Q Consensus 136 ~~gh~~~d~v~v~~lafs~--~~LaSGS~D~TIrlWD~~--tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS 209 (453)
..+|+++ |.|++|++ ++||+|+.|++|+|||+. ++++...+.+|.. .|..++|+ +..+++++
T Consensus 93 ~~~h~~~----I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~s~~ 160 (337)
T d1gxra_ 93 CLNRDNY----IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP--------ACYALAISPDSKVCFSCC 160 (337)
T ss_dssp CSCTTSB----EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS--------CEEEEEECTTSSEEEEEE
T ss_pred ecCCCCc----EEEEEEcCCCCEEEEeecccccccccccccccccccccccccc--------cccccccccccccccccc
Confidence 3478744 89999976 699999999999999987 4466777776543 46667765 66899999
Q ss_pred CCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeee
Q 046773 210 LDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGW 287 (453)
Q Consensus 210 ~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w 287 (453)
.|++|++|++.+ + ......|...+. .++|+++++. +++|+.|++|++||+++++.+.
T Consensus 161 ~d~~i~~~~~~~-~~~~~~~~~~~~~v~----~l~~s~~~~~---~~~~~~d~~v~i~d~~~~~~~~------------- 219 (337)
T d1gxra_ 161 SDGNIAVWDLHN-QTLVRQFQGHTDGAS----CIDISNDGTK---LWTGGLDNTVRSWDLREGRQLQ------------- 219 (337)
T ss_dssp TTSCEEEEETTT-TEEEEEECCCSSCEE----EEEECTTSSE---EEEEETTSEEEEEETTTTEEEE-------------
T ss_pred cccccccccccc-ccccccccccccccc----cccccccccc---cccccccccccccccccceeec-------------
Confidence 999999999987 4 233333444432 4899999986 7899999999999999988542
Q ss_pred eeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceE
Q 046773 288 RMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLA 365 (453)
Q Consensus 288 ~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i 365 (453)
...|.+.|.+++|+|++ +++++.|+.|++||++++++. ....|...+...+|+++++.+++++.|+ ++
T Consensus 220 --~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg-------~i 289 (337)
T d1gxra_ 220 --QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDN-------LL 289 (337)
T ss_dssp --EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTS-------EE
T ss_pred --ccccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCC-------eE
Confidence 12467889999999876 455577899999999987654 3345555555556778888999999999 99
Q ss_pred EEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEEC
Q 046773 366 IVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEV 411 (453)
Q Consensus 366 ~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~ 411 (453)
+||+..+++++..+. +...+.++.++++++++++++. ++|+|||+
T Consensus 290 ~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 290 NAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 999999999887764 5667999999999999998877 99999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.6e-26 Score=227.17 Aligned_cols=260 Identities=13% Similarity=0.102 Sum_probs=190.6
Q ss_pred EEEEeCCCcEEEEECCCCeEE-----EEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceE
Q 046773 157 LACGFADGAVRLFDLTTRLHV-----RTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETR 227 (453)
Q Consensus 157 LaSGS~D~TIrlWD~~tg~~~-----~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~ 227 (453)
+..+..++.+.+|+....+++ +++ +|.. .|.+++|+ |+.||+|+ |++|+|||+.+ + +..+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~H~~--------~V~~l~fs~dg~~lasg~-d~~i~iW~~~~-~~~~~~~ 99 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSL-DHTS--------VVCCVKFSNDGEYLATGC-NKTTQVYRVSD-GSLVARL 99 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEE-ECSS--------CCCEEEECTTSSEEEEEC-BSCEEEEETTT-CCEEEEE
T ss_pred ccccCCCCcEEEeCCCCCcceeeeeEeeC-CCCC--------cEEEEEECCCCCEEEEEe-CCeEEEEEecc-cceEeee
Confidence 346778889999998877643 233 3443 68889886 67899987 99999999976 3 2222
Q ss_pred Eeeecc-------------eecCc-eEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee
Q 046773 228 TAHFGS-------------VMDDG-VLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 228 ~~~~~~-------------v~~~~-~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
..+... ..... ..|+|+|+|++ |++|+.|++|++||..+++.. ..+.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~---l~s~~~dg~v~i~~~~~~~~~--------------~~~~~h 162 (388)
T d1erja_ 100 SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF---LATGAEDRLIRIWDIENRKIV--------------MILQGH 162 (388)
T ss_dssp CC-----------------CCCCBEEEEEECTTSSE---EEEEETTSCEEEEETTTTEEE--------------EEECCC
T ss_pred cccccccccccccccccccCCCCCEEEEEECCCCCc---ceecccccccccccccccccc--------------cccccc
Confidence 221110 00111 14899999996 889999999999999998843 235678
Q ss_pred ccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 294 TEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 294 ~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
...|.++.++++. .++++.++.|++||+++..+......+.....+..+..+++.+++++.|+ .+++|+..
T Consensus 163 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-------~i~i~~~~ 235 (388)
T d1erja_ 163 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDR-------AVRVWDSE 235 (388)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTS-------CEEEEETT
T ss_pred cccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCC-------eEEEeecc
Confidence 8999999998765 45556778999999999876555443333222222345678899999999 99999999
Q ss_pred CCeeEEEEE-------ecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC------------eEEEEecccCCceEE--
Q 046773 372 TFEEVCRFS-------LRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG------------EYMYSFRERIGEEVI-- 429 (453)
Q Consensus 372 tg~~v~~l~-------~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG------------~~l~tL~gh~~~~V~-- 429 (453)
++..+..+. .|.+.+..+.+++++.++++++. ++|++||+.++ .++.....|... |.
T Consensus 236 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~ 314 (388)
T d1erja_ 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF-VLSV 314 (388)
T ss_dssp TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC-EEEE
T ss_pred cCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccce-EEEE
Confidence 987766653 34566889999999999988887 99999999764 345566678777 77
Q ss_pred EEecCCCEEEEE-eCCcEEEEecC
Q 046773 430 AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 430 a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+|+|++++|++| .|++|+|||+.
T Consensus 315 ~~s~~~~~l~sg~~dg~i~vwd~~ 338 (388)
T d1erja_ 315 ATTQNDEYILSGSKDRGVLFWDKK 338 (388)
T ss_dssp EECGGGCEEEEEETTSEEEEEETT
T ss_pred EECCCCCEEEEEeCCCEEEEEECC
Confidence 677999999999 99999999975
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=4e-27 Score=233.93 Aligned_cols=230 Identities=11% Similarity=0.034 Sum_probs=182.2
Q ss_pred eEEEEEEc--CCeEEEEeCCCCEEEEEeecCC----cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeC
Q 046773 194 AVSGIIIT--DSQLIFATLDGDIHVAVIDDVA----NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDR 267 (453)
Q Consensus 194 ~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g----~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~ 267 (453)
.|.+++|+ ++.||+|+.|++|+|||+++ + +..+++|.+.|. .|+|+|++++ |+|||.|++|+|||+
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~-~~~~~~~~l~gH~~~V~----~l~fsp~~~~---l~s~s~D~~i~vWd~ 80 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVT----GVDWAPDSNR---IVTCGTDRNAYVWTL 80 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEE----EEEEETTTTE---EEEEETTSCEEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEECCC-CCEEEEEEecCCCCCEE----EEEECCCCCE---EEEEECCCeEEEEee
Confidence 57788875 67899999999999999986 3 455677877664 5899999996 889999999999999
Q ss_pred CCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEEcCCcEEEEECCCCceEEE----EeeccCCeEEEE
Q 046773 268 QAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVACTSSRVITFDLRNQGMVLG----ERGYGRGLYVTS 341 (453)
Q Consensus 268 ~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~----~~g~~~~~~v~~ 341 (453)
.+++... -..+.+|...|.+++|+|++ +++++.|++|++|+++....... ..+|...+...+
T Consensus 81 ~~~~~~~------------~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~ 148 (371)
T d1k8kc_ 81 KGRTWKP------------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 148 (371)
T ss_dssp ETTEEEE------------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred ccccccc------------ccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccc
Confidence 8876211 02345778899999999876 45567789999999887643322 134444444555
Q ss_pred EEecCCEEEEEeCCCccccCcceEEEEEcCCC------------------eeEEEEEecCCCeeEEEEeeCCCeEEEEeC
Q 046773 342 VDVNAEAYIVVENRELENQNRRLAIVRRVDTF------------------EEVCRFSLRADRNVNVMGCMNQGYALMCVE 403 (453)
Q Consensus 342 ~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg------------------~~v~~l~~~~~~v~~~~~~~~~~~lls~s~ 403 (453)
++|++..+++++.|+ +++||+.... +.+.....|...+..+.++|++.++++++.
T Consensus 149 ~~p~~~~l~s~s~D~-------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 221 (371)
T d1k8kc_ 149 WHPNSVLLAAGSCDF-------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221 (371)
T ss_dssp ECTTSSEEEEEETTS-------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred ccccccceeccccCc-------EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc
Confidence 677888999999999 9999997532 344555666777899999999999988887
Q ss_pred -CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEEeCCcEEEEec
Q 046773 404 -GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAASCGTNIHLWDF 451 (453)
Q Consensus 404 -~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg~D~~IklWDl 451 (453)
++|++||+.+++++.++.+|... |. +|+||+++|++|.|+.+++|+.
T Consensus 222 d~~i~iwd~~~~~~~~~~~~~~~~-v~s~~fs~d~~~la~g~d~~~~~~~~ 271 (371)
T d1k8kc_ 222 DSTVCLADADKKMAVATLASETLP-LLAVTFITESSLVAAGHDCFPVLFTY 271 (371)
T ss_dssp TTEEEEEEGGGTTEEEEEECSSCC-EEEEEEEETTEEEEEETTSSCEEEEE
T ss_pred CCcceEEeeecccceeeeeccccc-ceeeeecCCCCEEEEEcCCceEEEEe
Confidence 99999999999999999999988 87 6789999999888888888764
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.9e-26 Score=219.18 Aligned_cols=241 Identities=12% Similarity=0.150 Sum_probs=191.4
Q ss_pred EECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCC
Q 046773 169 FDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGC 246 (453)
Q Consensus 169 WD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~d 246 (453)
|+..+.++.++|+||... -+++++|+|++|||||.|++|||||+.+ + ++++.+|.+.|. .++|+|+
T Consensus 1 W~~~~~~~~~~l~GH~~~-------V~s~~~~~g~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~V~----~v~~~~~ 68 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDH-------VITCLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVW----SSQMRDN 68 (342)
T ss_dssp HHHSCCCCCEEEECSTTS-------CEEEEEEETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEE----EEEEETT
T ss_pred CCCCCCCcCEEECCcCCc-------eEEEEEECCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCCEE----EEEeCCC
Confidence 677788899999998752 1356899999999999999999999987 5 566667776654 4899886
Q ss_pred CceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCce
Q 046773 247 SRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGM 326 (453)
Q Consensus 247 g~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~ 326 (453)
.|++||.|+++++|+........ ....+...+......+.....++.|.+|.+||+.+++.
T Consensus 69 -----~l~s~s~D~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 129 (342)
T d2ovrb2 69 -----IIISGSTDRTLKVWNAETGECIH--------------TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129 (342)
T ss_dssp -----EEEEEETTSCEEEEETTTTEEEE--------------EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE
T ss_pred -----ccccceeccccccccccccccee--------------cccccceeEeeeecccccccccccceeEEEeecccccc
Confidence 48999999999999998877321 11123344555555666677778899999999999876
Q ss_pred EEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-Ce
Q 046773 327 VLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GV 405 (453)
Q Consensus 327 ~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~t 405 (453)
......+. ............++.++.++ .+++|+...++++..+..+.. ......+++.++++++. ++
T Consensus 130 ~~~~~~~~--~~~~~~~~~~~~~~~~~~d~-------~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~l~s~~~dg~ 198 (342)
T d2ovrb2 130 LHVLMGHV--AAVRCVQYDGRRVVSGAYDF-------MVKVWDPETETCLHTLQGHTN--RVYSLQFDGIHVVSGSLDTS 198 (342)
T ss_dssp EEEEECCS--SCEEEEEECSSCEEEEETTS-------CEEEEEGGGTEEEEEECCCSS--CEEEEEECSSEEEEEETTSC
T ss_pred eeeeeccc--ccceeeccccceeeeecCCC-------eEEEeecccceeeEEEcCccc--ccccccCCCCEEEEEeCCCe
Confidence 55543222 22345666778889999999 999999999998888877664 34455668888888877 99
Q ss_pred EEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 406 IRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 406 IrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|+|||+.+++++.++.+|... |.++++++++|+++ .|++|+|||+.
T Consensus 199 i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~~l~s~s~d~~i~iwd~~ 245 (342)
T d2ovrb2 199 IRVWDVETGNCIHTLTGHQSL-TSGMELKDNILVSGNADSTVKIWDIK 245 (342)
T ss_dssp EEEEETTTCCEEEEECCCCSC-EEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEeecccceeeeEecccccc-eeEEecCCCEEEEEcCCCEEEEEecc
Confidence 999999999999999999988 99999999999999 99999999974
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.4e-27 Score=230.78 Aligned_cols=240 Identities=13% Similarity=0.109 Sum_probs=176.7
Q ss_pred EEEEEecC----CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeC--CCCEEEEE
Q 046773 147 CRCLTLSD----LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATL--DGDIHVAV 218 (453)
Q Consensus 147 v~~lafs~----~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~--D~tIkvWd 218 (453)
|+|++|+| .+||||+.|++|||||+.++++...+..+....+..+...|.+++|+ +..|++++. |+.+++|+
T Consensus 66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~ 145 (325)
T d1pgua1 66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 145 (325)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEe
Confidence 89999974 59999999999999999888766555433221122223368888875 667777654 67899999
Q ss_pred eecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccc
Q 046773 219 IDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 219 ~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
+++ + +..+.+|...+. .++|+|++.. .+++++.|++|++||+.+++.... ...+.+|..+
T Consensus 146 ~~~-~~~~~~~~~h~~~v~----~~~~~~~~~~--~~~~~~~d~~v~~~d~~~~~~~~~-----------~~~~~~~~~~ 207 (325)
T d1pgua1 146 WDS-GNSLGEVSGHSQRIN----ACHLKQSRPM--RSMTVGDDGSVVFYQGPPFKFSAS-----------DRTHHKQGSF 207 (325)
T ss_dssp TTT-CCEEEECCSCSSCEE----EEEECSSSSC--EEEEEETTTEEEEEETTTBEEEEE-----------ECSSSCTTCC
T ss_pred ecc-cccceeeeecccccc----cccccccccc--eEEEeeccccccccccccccccee-----------cccccCCCCc
Confidence 987 4 344555665543 4899999876 367899999999999988773210 1234567888
Q ss_pred eeEEEEcCCc---eEEEEcCCcEEEEECCCCceEEEEeeccCCeE--EEEEE-ecCCEEEEEeCCCccccCcceEEEEEc
Q 046773 297 VGRVRVTSHE---SAVACTSSRVITFDLRNQGMVLGERGYGRGLY--VTSVD-VNAEAYIVVENRELENQNRRLAIVRRV 370 (453)
Q Consensus 297 v~~v~~s~~~---~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~--v~~~~-~~g~~l~s~s~dg~~~~~~~~i~Iw~~ 370 (453)
|.+++|+|+. +++++.|++|++||+++++++..+.+|...+. +.++. +++..+++++.|+ +|+|||+
T Consensus 208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~-------~i~iwd~ 280 (325)
T d1pgua1 208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA-------TIRVWDV 280 (325)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS-------EEEEEET
T ss_pred cEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCC-------eEEEEEC
Confidence 9999999853 34456789999999999988777666554332 33433 5678999999999 9999999
Q ss_pred CCCeeEEEEEecCCC--eeEEEEee-CCCeEEEEeC-CeEEEEEC
Q 046773 371 DTFEEVCRFSLRADR--NVNVMGCM-NQGYALMCVE-GVIRVWEV 411 (453)
Q Consensus 371 ~tg~~v~~l~~~~~~--v~~~~~~~-~~~~lls~s~-~tIrlWD~ 411 (453)
.+++++..+..+.+. +..+.+++ ++.++++++. ++|+|||+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 281 TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 999999998887654 33444443 3467888876 99999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7.7e-26 Score=210.19 Aligned_cols=225 Identities=16% Similarity=0.246 Sum_probs=174.2
Q ss_pred ceEEEEEEcCCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCC
Q 046773 193 RAVSGIIITDSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAE 270 (453)
Q Consensus 193 ~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg 270 (453)
..|.+++|+|++|||||.|++|+|||+++ + +.++.+|.+.|. .|+| ++++ |+|||.|++|++||+.++
T Consensus 16 ~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~-~~~~~~l~~H~~~V~----~v~~--~~~~---l~s~s~D~~i~~~~~~~~ 85 (293)
T d1p22a2 16 KGVYCLQYDDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVL----CLQY--DERV---IITGSSDSTVRVWDVNTG 85 (293)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEE----EEEC--CSSE---EEEEETTSCEEEEESSSC
T ss_pred CCEEEEEEcCCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCCEe----eeec--ccce---eecccccccccccccccc
Confidence 36889999999999999999999999987 4 566777877653 2554 6664 899999999999999998
Q ss_pred cEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEE
Q 046773 271 EVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAY 349 (453)
Q Consensus 271 ~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l 349 (453)
..... ...+.............+++++.++.+++||+.+....... ....+...+.++.+.+..+
T Consensus 86 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 151 (293)
T d1p22a2 86 EMLNT--------------LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYI 151 (293)
T ss_dssp CEEEE--------------ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEE
T ss_pred ccccc--------------ccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceeccccc
Confidence 73321 01111112222223344566677899999999886543222 2233445667888889999
Q ss_pred EEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceE
Q 046773 350 IVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEV 428 (453)
Q Consensus 350 ~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V 428 (453)
++++.|+ ++++|+..+++.+..+..+...+..+. +++.++++++. ++|+|||+.+++++..+.+|... |
T Consensus 152 ~~~s~d~-------~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v 221 (293)
T d1p22a2 152 VSASGDR-------TIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-V 221 (293)
T ss_dssp EEEETTS-------EEEEEETTTCCEEEEEECCSSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEECCCSSC-E
T ss_pred ccccCCC-------ceeeecCCCCcEEEEEccccccccccc--CCCCeEEEecCCCEEEEEecccceeeeeeccccee-e
Confidence 9999999 999999999999998887776555443 45677777776 99999999999999999999888 9
Q ss_pred EEEecCCCEEEEE-eCCcEEEEec
Q 046773 429 IAFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 429 ~a~s~d~~~lasg-~D~~IklWDl 451 (453)
..+++++.+|+++ .|++|+|||+
T Consensus 222 ~~~~~~~~~l~sg~~dg~i~iwd~ 245 (293)
T d1p22a2 222 RCIRFDNKRIVSGAYDGKIKVWDL 245 (293)
T ss_dssp EEEECCSSEEEEEETTSCEEEEEH
T ss_pred eeccccceEEEEEcCCCEEEEEEC
Confidence 9999999999999 9999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=5.7e-26 Score=216.24 Aligned_cols=239 Identities=11% Similarity=0.078 Sum_probs=181.9
Q ss_pred CeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceE-EeeecceecCceEEEEeCCCc
Q 046773 174 RLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETR-TAHFGSVMDDGVLIDFTGCSR 248 (453)
Q Consensus 174 g~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~-~~~~~~v~~~~~~v~Fs~dg~ 248 (453)
|+..+++.||.. .|.+|+|+ ++.|+|||.|++|+|||+++ + ..++ ..|...|. .++|+|+|+
T Consensus 2 g~~~~~~~GH~~--------~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~h~~~v~----~v~~~~~g~ 68 (299)
T d1nr0a2 2 GSIDQVRYGHNK--------AITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMIT----GIKTTSKGD 68 (299)
T ss_dssp TEEEEEECCCSS--------CEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEE----EEEECTTSC
T ss_pred CccceEcCCCCC--------CcEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCCcEE----EEEeeccce
Confidence 677899999865 68889886 67899999999999999987 4 2222 23444432 489999997
Q ss_pred eeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEEcCCcEEEEECCCCceE
Q 046773 249 YWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVACTSSRVITFDLRNQGMV 327 (453)
Q Consensus 249 ~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas~d~tIrlWDl~t~~~~ 327 (453)
+++++.|++|++|+........ .. .....+...+.++.+++++. ++++.++.+++||... ..
T Consensus 69 ----~~~~~~d~~v~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~ 131 (299)
T d1nr0a2 69 ----LFTVSWDDHLKVVPAGGSGVDS------SK-----AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LT 131 (299)
T ss_dssp ----EEEEETTTEEEEECSSSSSSCT------TS-----CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EE
T ss_pred ----eecccceeeEEEeccCCccccc------cc-----ccccccccccccccccccccccccccccccccccccc--cc
Confidence 4577889999999987644110 00 11235567788899998764 4555678999999653 22
Q ss_pred EEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEE-EEEecCCCeeEEEEeeCCCeEEEEeC-Ce
Q 046773 328 LGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVC-RFSLRADRNVNVMGCMNQGYALMCVE-GV 405 (453)
Q Consensus 328 ~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~-~l~~~~~~v~~~~~~~~~~~lls~s~-~t 405 (453)
.. ...+.....+++++++.+++++.++ .+++||+.+++... ....|+..+..+.+++++.++++++. ++
T Consensus 132 ~~--~~~~~~~~~~~s~~~~~l~~g~~dg-------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 202 (299)
T d1nr0a2 132 EV--PISYNSSCVALSNDKQFVAVGGQDS-------KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK 202 (299)
T ss_dssp EE--ECSSCEEEEEECTTSCEEEEEETTS-------EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cc--ccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccc
Confidence 21 2234456677888999999999999 99999999886544 23456777999999999999988877 99
Q ss_pred EEEEECCCCeEE---EEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 406 IRVWEVEGGEYM---YSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 406 IrlWD~~tG~~l---~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
|++||+.+++.+ ..+.+|... |+ +|+|++++|+++ .|++|+|||+.
T Consensus 203 i~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~sgs~dg~i~iwd~~ 254 (299)
T d1nr0a2 203 VIPYSVANNFELAHTNSWTFHTAK-VACVSWSPDNVRLATGSLDNSVIVWNMN 254 (299)
T ss_dssp EEEEEGGGTTEESCCCCCCCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cccccccccccccccccccccccc-cccccccccccceEEEcCCCEEEEEECC
Confidence 999999998665 456778888 87 567999999999 99999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=7.8e-25 Score=209.04 Aligned_cols=244 Identities=14% Similarity=0.113 Sum_probs=190.4
Q ss_pred eEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCcee
Q 046773 175 LHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYW 250 (453)
Q Consensus 175 ~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~ 250 (453)
+..+||+||.. .|.+|+|+ +..|||||.|++|+|||+.+ + +..+..|...|. .++|+|++++
T Consensus 46 ~~~~tL~GH~~--------~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~~~~~~~~v~----~v~~~~~~~~- 111 (340)
T d1tbga_ 46 RTRRTLRGHLA--------KIYAMHWGTDSRLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVM----TCAYAPSGNY- 111 (340)
T ss_dssp CEEEEECCCSS--------CEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEEECSCSCEE----EEEECTTSSE-
T ss_pred eeeEEECCCCC--------CEEEEEECCCCCEEEEEECCCceeeeeccc-ceeEEEEecccccEE----eeEeecccee-
Confidence 46789999875 68899986 66899999999999999987 5 455666766554 4899999996
Q ss_pred eEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc-eEEEEcCCcEEEEECCCCceEEE
Q 046773 251 VGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE-SAVACTSSRVITFDLRNQGMVLG 329 (453)
Q Consensus 251 ~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~-~~vas~d~tIrlWDl~t~~~~~~ 329 (453)
|++|+.|++|++|+....... ......+.+|............. ......+.+.+.|+..+......
T Consensus 112 --l~~~~~d~~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (340)
T d1tbga_ 112 --VACGGLDNICSIYNLKTREGN----------VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179 (340)
T ss_dssp --EEEEETTCCEEEEESSSSCSC----------CCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred --eeeecccceeecccccccccc----------cccceeccccccccccccccccccccccccccccccccccccccccc
Confidence 889999999999998775510 00013455666655554444333 44456678899999987655444
Q ss_pred EeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEE
Q 046773 330 ERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRV 408 (453)
Q Consensus 330 ~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrl 408 (453)
...+........+.+.+..+++++.|+ ++++||+.+++++.++..|...+..+.++|++.++++++. ++|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~d~-------~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~ 252 (340)
T d1tbga_ 180 FTGHTGDVMSLSLAPDTRLFVSGACDA-------SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252 (340)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTT-------EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccccceeEeeeccccccceeEEeecCc-------eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 444444555556677788889999999 9999999999999999998888999999999999988887 99999
Q ss_pred EECCCCeEEEEec--ccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 409 WEVEGGEYMYSFR--ERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 409 WD~~tG~~l~tL~--gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
||+.+.+++.++. .|... |. +|+|++++|++| .|++|+|||+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~g~~dg~i~iwd~~ 300 (340)
T d1tbga_ 253 FDLRADQELMTYSHDNIICG-ITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp EETTTTEEEEEECCTTCCSC-EEEEEECSSSCEEEEEETTSCEEEEETT
T ss_pred EeecccccccccccccccCc-eEEEEECCCCCEEEEEECCCEEEEEECC
Confidence 9999999888774 34455 66 678999999999 99999999974
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.9e-24 Score=213.77 Aligned_cols=252 Identities=11% Similarity=0.077 Sum_probs=163.6
Q ss_pred EEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCC-----cceEEe--eecceecCceEEEEeCCCcee
Q 046773 178 RTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVA-----NETRTA--HFGSVMDDGVLIDFTGCSRYW 250 (453)
Q Consensus 178 ~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g-----~~~~~~--~~~~v~~~~~~v~Fs~dg~~~ 250 (453)
...++|.. .|.+|+++++.|+|||.|++|||||..+.. ...... |...+..-........++...
T Consensus 8 ~~~~~H~~--------~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (393)
T d1sq9a_ 8 NAGKAHDA--------DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79 (393)
T ss_dssp EESSCSSS--------CEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred ecCCcccC--------ccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC
Confidence 34567654 688899999999999999999999976511 111111 111110000001111222222
Q ss_pred eEEEEeeCCCeEEEeeCCCCc---EEecccccCCcceeeeeeeeeeccceeEEEEcCC-------ceEEEEcCCcEEEEE
Q 046773 251 VGLYAGLAGRAFHIWDRQAEE---VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSH-------ESAVACTSSRVITFD 320 (453)
Q Consensus 251 ~~LaSgS~D~tIrvWD~~tg~---~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~-------~~~vas~d~tIrlWD 320 (453)
..+++++.|++|++|++.... .+..+..... ....+...+..+++.++ .+++++.|++|++||
T Consensus 80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~ 152 (393)
T d1sq9a_ 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLL-------DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 152 (393)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCS-------CTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred cEEEEEeCCCcEEEEEccCCCceeeeecccccee-------eeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEE
Confidence 347899999999999987644 1111110000 00112233445555432 245567789999999
Q ss_pred CCCCce--------------EEE-E-eeccCCeEEEEEEecCC-EEEEEeCCCccccCcceEEEEEcCCCeeEEEE----
Q 046773 321 LRNQGM--------------VLG-E-RGYGRGLYVTSVDVNAE-AYIVVENRELENQNRRLAIVRRVDTFEEVCRF---- 379 (453)
Q Consensus 321 l~t~~~--------------~~~-~-~g~~~~~~v~~~~~~g~-~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l---- 379 (453)
+..... +.. . ....+...+.+++++++ .+++++.|+ +|+|||+.+++++..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg-------~i~iwd~~~~~~~~~~~~~~ 225 (393)
T d1sq9a_ 153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNG-------TVQISELSTLRPLYNFESQH 225 (393)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTS-------EEEEEETTTTEEEEEEECCC
T ss_pred eecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCC-------cEEEEeeccccccccccccc
Confidence 853210 001 1 11122223445554443 778999999 9999999999877655
Q ss_pred --EecCCCeeEEEEeeCCCeEEEEeC-C---eEEEEECCCCeEEEEec-------------ccCCceEE--EEecCCCEE
Q 046773 380 --SLRADRNVNVMGCMNQGYALMCVE-G---VIRVWEVEGGEYMYSFR-------------ERIGEEVI--AFVGDDRHV 438 (453)
Q Consensus 380 --~~~~~~v~~~~~~~~~~~lls~s~-~---tIrlWD~~tG~~l~tL~-------------gh~~~~V~--a~s~d~~~l 438 (453)
..|.+.|..+.|+|++.++++++. + .|||||+++|+++.+|. ||.+. |+ +|+||+++|
T Consensus 226 ~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~-V~~l~fspd~~~l 304 (393)
T d1sq9a_ 226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW-VMSLSFNDSGETL 304 (393)
T ss_dssp ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC-EEEEEECSSSSEE
T ss_pred ccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCc-eeeeccCCCCCee
Confidence 346678999999999999998875 4 69999999999999885 89998 88 678999999
Q ss_pred EEE-eCCcEEEEecC
Q 046773 439 AAS-CGTNIHLWDFG 452 (453)
Q Consensus 439 asg-~D~~IklWDl~ 452 (453)
+|+ .|++|||||+.
T Consensus 305 ~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 305 CSAGWDGKLRFWDVK 319 (393)
T ss_dssp EEEETTSEEEEEETT
T ss_pred EEECCCCEEEEEECC
Confidence 999 99999999974
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4.6e-23 Score=195.03 Aligned_cols=226 Identities=12% Similarity=0.106 Sum_probs=171.4
Q ss_pred CeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEE
Q 046773 174 RLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGL 253 (453)
Q Consensus 174 g~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~L 253 (453)
.+.+++|+||.. .|.+++|+. |+|||.|++|++||+.+ + ...|...|. .++|++++. |
T Consensus 3 ~~~i~~l~gH~~--------~I~~l~~s~--l~sgs~Dg~v~~Wd~~~-~---~~~h~~~V~----~~~~~~~~~----~ 60 (287)
T d1pgua2 3 DEVLKTISGHNK--------GITALTVNP--LISGSYDGRIMEWSSSS-M---HQDHSNLIV----SLDNSKAQE----Y 60 (287)
T ss_dssp EEEEEEECCCSS--------CEEEEETTT--TEEEETTSCEEETTTTE-E---ECCCCSCEE----EEECCSTTC----C
T ss_pred cceeEEECCCCC--------ceEEEEECc--EEEEeCCCeEEEEECCC-C---CCCCCCCEE----EEEecCCCe----E
Confidence 467999999865 689999986 99999999999999875 2 345665543 478887765 6
Q ss_pred EEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce-EEEEcCCcEEEEECCCCceEEEEee
Q 046773 254 YAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES-AVACTSSRVITFDLRNQGMVLGERG 332 (453)
Q Consensus 254 aSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~-~vas~d~tIrlWDl~t~~~~~~~~g 332 (453)
+++|.|++||+||+.+.+. ...+..+.+++++. ++.+.++.+.+|+..++.++.....
T Consensus 61 ~s~s~D~~v~~w~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (287)
T d1pgua2 61 SSISWDDTLKVNGITKHEF---------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119 (287)
T ss_dssp EEEETTTEEEETTEEEEEC---------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEeecccccccccccccc---------------------ccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc
Confidence 7999999999999855331 12344566776665 4446678899999999887666533
Q ss_pred ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEe-cCCCeeEEEEeeCCCeEEEEeC-CeEEEEE
Q 046773 333 YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSL-RADRNVNVMGCMNQGYALMCVE-GVIRVWE 410 (453)
Q Consensus 333 ~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~-~~~~v~~~~~~~~~~~lls~s~-~tIrlWD 410 (453)
+. .+.+++++++.+++++.++ +.+++|+....+....+.. +...+..+.++|++.++++++. +.|++||
T Consensus 120 ~~---~~~~~~~~~~~~~v~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d 190 (287)
T d1pgua2 120 NS---PGSAVSLSQNYVAVGLEEG------NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYD 190 (287)
T ss_dssp SS---CEEEEEECSSEEEEEETTT------SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cc---eeeeeeccCcceeeecccc------ceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccccccee
Confidence 22 3568899999988887765 2799999876554444332 3345888999999999988877 9999999
Q ss_pred CCCCeEEEE-ecccCCceEEEE--ec----------CCCEEEEE-eCCcEEEEecC
Q 046773 411 VEGGEYMYS-FRERIGEEVIAF--VG----------DDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 411 ~~tG~~l~t-L~gh~~~~V~a~--s~----------d~~~lasg-~D~~IklWDl~ 452 (453)
+.+++.+.. +.+|.+. |.++ +| ++.+|+|| .|++|+|||+.
T Consensus 191 ~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 191 LQSREVKTSRWAFRTSK-INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp TTTTEEEECCSCCCSSC-EEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred ecccccccccccccccc-cceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence 999988764 6788888 8744 33 56789999 99999999974
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=7.5e-23 Score=197.43 Aligned_cols=260 Identities=8% Similarity=0.076 Sum_probs=178.0
Q ss_pred EEEEEe-cCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCC--CEEEEEeec
Q 046773 147 CRCLTL-SDLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDG--DIHVAVIDD 221 (453)
Q Consensus 147 v~~laf-s~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~--tIkvWd~~~ 221 (453)
.+.+.. +++++|+++ ++.|.|||++++++++. +|.. .|.+++|+ |+.|+++|.|. +|++||+++
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~--------~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~ 75 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPL--------RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT 75 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCS--------CEEEEEECSSSEEEEEEEETTEEEEEEEETTT
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCC--------CEEEEEECCCCCEEEEEEcCCCCEEEEEECCC
Confidence 455665 567899887 46999999999988764 4443 57788885 66788877664 799999987
Q ss_pred CC-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE
Q 046773 222 VA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 222 ~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
+ ...+..|...+. .++|+|||++ |++++.|+++++||+++++.. ..+..|...+.++
T Consensus 76 -~~~~~~~~~~~~v~----~~~~spdg~~---l~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 133 (360)
T d1k32a3 76 -GKAEKFEENLGNVF----AMGVDRNGKF---AVVANDRFEIMTVDLETGKPT--------------VIERSREAMITDF 133 (360)
T ss_dssp -CCEEECCCCCCSEE----EEEECTTSSE---EEEEETTSEEEEEETTTCCEE--------------EEEECSSSCCCCE
T ss_pred -CcEEEeeCCCceEE----eeeecccccc---cceecccccccccccccccee--------------eeeecccccccch
Confidence 5 344444555443 4899999997 889999999999999998842 2344566778889
Q ss_pred EEcCCceEEE--Ec----------CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEE
Q 046773 301 RVTSHESAVA--CT----------SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVR 368 (453)
Q Consensus 301 ~~s~~~~~va--s~----------d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw 368 (453)
+|+|++..++ +. +..+++||+.++++.. ...+.......+++++|+.+++++.++ .+++|
T Consensus 134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~-------~~~~~ 205 (360)
T d1k32a3 134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRS-------LDPSP 205 (360)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCC-------CCCEE
T ss_pred hhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCC-------ceEcc
Confidence 9999875443 11 2358999999875533 333444556678899999999999888 77888
Q ss_pred EcCCC-------eeEEEEEecCCC------------------------------------eeEEEEeeCCCeEE------
Q 046773 369 RVDTF-------EEVCRFSLRADR------------------------------------NVNVMGCMNQGYAL------ 399 (453)
Q Consensus 369 ~~~tg-------~~v~~l~~~~~~------------------------------------v~~~~~~~~~~~ll------ 399 (453)
+..+. ..+..+.++.+. ...+...+++...+
T Consensus 206 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (360)
T d1k32a3 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285 (360)
T ss_dssp CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCC
T ss_pred cccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecC
Confidence 75432 122222222111 11111111111111
Q ss_pred -------EEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 400 -------MCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 400 -------s~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+++. ++|++||+++++.. .+ .+. |. +|+|||++|+++ .|++|+|||+.
T Consensus 286 ~~~~~~~~~~~~~~i~~~d~~~~~~~-~~---~~~-v~~~~~SpDG~~l~~~~~Dg~i~v~d~~ 344 (360)
T d1k32a3 286 EFAAYYQGAPEKGVLLKYDVKTRKVT-EV---KNN-LTDLRLSADRKTVMVRKDDGKIYTFPLE 344 (360)
T ss_dssp SHHHHHHCCCCCEEEEEEETTTCCEE-EE---EEE-EEEEEECTTSCEEEEEETTSCEEEEESS
T ss_pred CCeeEEEecCCCCEEEEEECCCCeEE-Ee---cCC-cCEEEECCCCCEEEEEECCCeEEEEECC
Confidence 1122 79999999998753 33 334 55 789999999999 99999999975
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=1e-22 Score=206.25 Aligned_cols=274 Identities=11% Similarity=0.047 Sum_probs=160.5
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecCC--cceEE---
Q 046773 156 YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDVA--NETRT--- 228 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g--~~~~~--- 228 (453)
++|+.+.|++|+|||+.|++++++|..|. .+.+|+| ||++|++++.|++|++||+.+ + ..+.+
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~---------~~~~vafSPDGk~l~~~~~d~~v~vwd~~t-~~~~~~~~i~~ 103 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY---------AVHISRMSASGRYLLVIGRDARIDMIDLWA-KEPTKVAEIKI 103 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS---------SEEEEEECTTSCEEEEEETTSEEEEEETTS-SSCEEEEEEEC
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC---------CeeEEEECCCCCEEEEEeCCCCEEEEEccC-CceeEEEEEeC
Confidence 57899999999999999999999998653 3556766 588999999999999999987 4 12222
Q ss_pred --eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE---ecccccCCcceeeeeeeeeeccceeEEEEc
Q 046773 229 --AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF---VGGDLTDHNTVMGWRMLTEFTEFVGRVRVT 303 (453)
Q Consensus 229 --~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~---~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s 303 (453)
.|.+-+. .++|+|||+++ +++++.|++|++||.++++.. .++.... . .....+......+.++
T Consensus 104 ~~~~~~~~~----s~~~spDG~~l--~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~i~~s 171 (426)
T d1hzua2 104 GIEARSVES----SKFKGYEDRYT--IAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-D-----TQTYHPEPRVAAIIAS 171 (426)
T ss_dssp CSEEEEEEE----CCSTTCTTTEE--EEEEEESSEEEEEETTTCCEEEEEECCEECS-S-----SCCEESCCCEEEEEEC
T ss_pred CCCCcceEE----eeeecCCCCEE--EEeecCCCeEEEEcCCccceeEEeeccCCCc-c-----ceeecCCCceeEEEEC
Confidence 2222111 36789999972 456678999999999998732 2211000 0 0000111112222233
Q ss_pred CCce--EEEEcC-CcEEEEECCCCceEE-EEeeccCCeEEEEEEecCCEEEEEeCCCcc---------------------
Q 046773 304 SHES--AVACTS-SRVITFDLRNQGMVL-GERGYGRGLYVTSVDVNAEAYIVVENRELE--------------------- 358 (453)
Q Consensus 304 ~~~~--~vas~d-~tIrlWDl~t~~~~~-~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~--------------------- 358 (453)
+++. +++..+ +.|.+++..+...+. ...+++....-..++++++.++++..+...
T Consensus 172 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (426)
T d1hzua2 172 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 251 (426)
T ss_dssp SSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCC
T ss_pred CCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcc
Confidence 2221 111111 223333333222111 111222222223333444433333221100
Q ss_pred --------------------ccCcceEEEEEcCC-------CeeEEEEEecCCCeeEEEEeeCCCeEEEE-------eC-
Q 046773 359 --------------------NQNRRLAIVRRVDT-------FEEVCRFSLRADRNVNVMGCMNQGYALMC-------VE- 403 (453)
Q Consensus 359 --------------------~~~~~~i~Iw~~~t-------g~~v~~l~~~~~~v~~~~~~~~~~~lls~-------s~- 403 (453)
...+..+.+|+... ++...++..|...+..+.++|+++++++. +.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~ 331 (426)
T d1hzua2 252 HPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS 331 (426)
T ss_dssp CCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHH
T ss_pred cccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccC
Confidence 00012445554332 35666777777778899999999998852 22
Q ss_pred CeEEEEECCCCeEEEEec---------ccCCceEE--EEecCCCEE-EEE-----eCCcEEEEecC
Q 046773 404 GVIRVWEVEGGEYMYSFR---------ERIGEEVI--AFVGDDRHV-AAS-----CGTNIHLWDFG 452 (453)
Q Consensus 404 ~tIrlWD~~tG~~l~tL~---------gh~~~~V~--a~s~d~~~l-asg-----~D~~IklWDl~ 452 (453)
++|+|||++++++++++. .|... |+ +|+|||++| +|. .|++|+|||..
T Consensus 332 ~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~r-v~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~ 396 (426)
T d1hzua2 332 QSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR-VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 396 (426)
T ss_dssp TCEEEEETTCTTSCCEEECHHHHHCCCSSCCC-EEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred CEEEEEECCCCCcCeEEeccchhcccCCCCcc-EEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence 899999999998876652 33444 66 789999976 442 47889999964
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=2.6e-20 Score=175.13 Aligned_cols=254 Identities=10% Similarity=0.032 Sum_probs=182.0
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeE-EEEeCCCCEEEEEeecCC--cceEEeee
Q 046773 157 LACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQL-IFATLDGDIHVAVIDDVA--NETRTAHF 231 (453)
Q Consensus 157 LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~L-asgS~D~tIkvWd~~~~g--~~~~~~~~ 231 (453)
.|+++.|++|+|||++|++.++++.... .+.+++|+ |++| ++++.+++|++||+.+ + +.++..+.
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~---------~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~~~~ 74 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVGS---------NPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS 74 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSS---------SEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECCC---------CceEEEEeCCCCEEEEEECCCCEEEEEECCC-Cceeeeeeccc
Confidence 3678899999999999999999987422 24556765 6666 6778899999999987 4 23333222
Q ss_pred cceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EE
Q 046773 232 GSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AV 309 (453)
Q Consensus 232 ~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~v 309 (453)
....++|+++++. .+++++.|..+++||..+++... .+. +......+.++|++. ++
T Consensus 75 -----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~dg~~~~~ 132 (301)
T d1l0qa2 75 -----SPQGVAVSPDGKQ--VYVTNMASSTLSVIDTTSNTVAG--------------TVK-TGKSPLGLALSPDGKKLYV 132 (301)
T ss_dssp -----SEEEEEECTTSSE--EEEEETTTTEEEEEETTTTEEEE--------------EEE-CSSSEEEEEECTTSSEEEE
T ss_pred -----ccccccccccccc--ccccccccceeeecccccceeee--------------ecc-ccccceEEEeecCCCeeee
Confidence 1235899999987 35677889999999999987431 122 224556788988764 33
Q ss_pred EEc-CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeE
Q 046773 310 ACT-SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVN 388 (453)
Q Consensus 310 as~-d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~ 388 (453)
++. +.++.+||..++.++.....+ .......+++++..+++++.+. ..+.+++....+....+... .....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (301)
T d1l0qa2 133 TNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDS------MSISVIDTVTNSVIDTVKVE-AAPSG 204 (301)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECS-SEEEE
T ss_pred eeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccc------cccccccccceeeeeccccc-CCcce
Confidence 443 578999999998766554332 2334456778888887776654 16777877777665555433 34567
Q ss_pred EEEeeCCCeEEEE-eC---CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEE-EEE-eCCcEEEEecC
Q 046773 389 VMGCMNQGYALMC-VE---GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHV-AAS-CGTNIHLWDFG 452 (453)
Q Consensus 389 ~~~~~~~~~lls~-s~---~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~l-asg-~D~~IklWDl~ 452 (453)
+++++++..++.+ .+ ++|++||+.+++++.++..+.. ++ +|+|||++| +++ .|++|+|||+.
T Consensus 205 ~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~--~~~va~spdg~~l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD--PAGIAVTPDGKKVYVALSFCNTVSVIDTA 274 (301)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS--EEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred eeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCC--EEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 7888888887644 33 7899999999999998875543 44 789999987 677 89999999974
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=1.6e-21 Score=183.99 Aligned_cols=241 Identities=16% Similarity=0.047 Sum_probs=155.6
Q ss_pred EEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeecCC-cce---EEeeecceecCceEEEEeCCCce
Q 046773 176 HVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDDVA-NET---RTAHFGSVMDDGVLIDFTGCSRY 249 (453)
Q Consensus 176 ~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~---~~~~~~~v~~~~~~v~Fs~dg~~ 249 (453)
.++.+++|.. .|++|+|+ ++.||+||.|++|||||++... ... ...|.+.|. .|+|+|++..
T Consensus 3 ~v~~~~~h~d--------~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~----~v~f~~~~~~ 70 (342)
T d1yfqa_ 3 IVQIEQAPKD--------YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL----CCNFIDNTDL 70 (342)
T ss_dssp EEECSSCCSS--------CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE----EEEEEESSSE
T ss_pred eEEcCCCCCC--------CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEE----EEEEeCCCCC
Confidence 4555666543 68899885 7799999999999999998632 111 223555543 4899988653
Q ss_pred eeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccce-eEEE--EcCCceEEEEcCCcEEEEECCCCce
Q 046773 250 WVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFV-GRVR--VTSHESAVACTSSRVITFDLRNQGM 326 (453)
Q Consensus 250 ~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v-~~v~--~s~~~~~vas~d~tIrlWDl~t~~~ 326 (453)
.|+||+.|++|++||+.++..... ...+.... .... ......+.++.++++++||++++..
T Consensus 71 --~l~sg~~d~~v~~w~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~ 134 (342)
T d1yfqa_ 71 --QIYVGTVQGEILKVDLIGSPSFQA--------------LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp --EEEEEETTSCEEEECSSSSSSEEE--------------CBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT
T ss_pred --EEEEcccccceeeeeccccccccc--------------ccccccccccccccccccccccccccccccceeecccccc
Confidence 388999999999999998762210 00111111 1122 2233456667789999999976533
Q ss_pred EEEE----eec--cCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE---ecCCCeeEEEEee-CCC
Q 046773 327 VLGE----RGY--GRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS---LRADRNVNVMGCM-NQG 396 (453)
Q Consensus 327 ~~~~----~g~--~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~---~~~~~v~~~~~~~-~~~ 396 (453)
.... ..+ ........+.+.++.+++++.|+ .+++|++.+.+...... ............+ ++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (342)
T d1yfqa_ 135 GVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNS-------QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE 207 (342)
T ss_dssp BCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTT-------EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC
T ss_pred ceeeecccccccccceeeeeeeeccCCceeeecCCC-------cEEEEecccCcccceeeeecccccceeeeEeecCCCC
Confidence 2211 111 11223456788899999999999 99999998764332221 1222233444444 445
Q ss_pred eEEEEeC-CeEEEEECCCCeEE---------E------EecccCCceEE--EEecCCCEEEEE-eCCcEEEEecC
Q 046773 397 YALMCVE-GVIRVWEVEGGEYM---------Y------SFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 397 ~lls~s~-~tIrlWD~~tG~~l---------~------tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.+++++. +.+++|+....... . ...+|... |+ +|+|++++|||| .|++|+|||+.
T Consensus 208 ~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~sp~~~~lasg~~Dg~v~vWD~~ 281 (342)
T d1yfqa_ 208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP-VNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC-EEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred EEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccc-ceeEEecCCccEEEEECCCCEEEEEECC
Confidence 5666665 99999998753221 1 11244445 66 678999999999 99999999975
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=2.9e-20 Score=176.97 Aligned_cols=269 Identities=7% Similarity=-0.075 Sum_probs=171.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeE-EEEeCCCCEEEEEeecCC--cceEEe
Q 046773 155 LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQL-IFATLDGDIHVAVIDDVA--NETRTA 229 (453)
Q Consensus 155 ~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~L-asgS~D~tIkvWd~~~~g--~~~~~~ 229 (453)
++|+|++.|++|+|||++++++++++..+.... .+.+++| ||+.| ++++.|++|.+||+.+ + +.....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~------~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~ 74 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGP------TPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTT------CCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEEC
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCC------CccEEEECCCCCEEEEEECCCCeEEEEECCC-CcEEEEEec
Confidence 589999999999999999999999997543211 2234555 56666 6778899999999988 5 222322
Q ss_pred eeccee-cCceEEEEeCCCceeeEEEEee------------CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccc
Q 046773 230 HFGSVM-DDGVLIDFTGCSRYWVGLYAGL------------AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 230 ~~~~v~-~~~~~v~Fs~dg~~~~~LaSgS------------~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
+..... .....++|+|||++ |++++ .+..+.+||..+++... ++. +...
T Consensus 75 ~~~~~~~~~~~~v~~s~dg~~---l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--------------~~~-~~~~ 136 (337)
T d1pbyb_ 75 STPEERVKSLFGAALSPDGKT---LAIYESPVRLELTHFEVQPTRVALYDAETLSRRK--------------AFE-APRQ 136 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSE---EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE--------------EEE-CCSS
T ss_pred CCCcccccceeeEEEcCCCcE---EEEeecCCcceeeeccccccceeeccccCCeEEE--------------ecc-ccCC
Confidence 222110 11124899999997 44433 46788999999988432 111 2245
Q ss_pred eeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEE--------------EEEeCCC---ccc
Q 046773 297 VGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAY--------------IVVENRE---LEN 359 (453)
Q Consensus 297 v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l--------------~s~s~dg---~~~ 359 (453)
+..+.|++++..+.+.++.+.+||+.++++..+...+.... ...+.+++..+ .....+. ...
T Consensus 137 ~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T d1pbyb_ 137 ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp CCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred ceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccc-cceecCCcceeeccccccceeeeeeeeeeeccceeeec
Confidence 66789999886665556778999999987665542211100 01111111100 0111110 000
Q ss_pred cCcceEEEEEcCCCeeEEE-EEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCCceEE--EEecCCC
Q 046773 360 QNRRLAIVRRVDTFEEVCR-FSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDR 436 (453)
Q Consensus 360 ~~~~~i~Iw~~~tg~~v~~-l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~ 436 (453)
..+..+.+|+..+++.... +..+........+++++.++. +.+++|++||+++++++.++.- ... +. +|+|||+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~-~~~-~~~~~~s~dG~ 292 (337)
T d1pbyb_ 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF-GAYNVLESFDLEKNASIKRVPL-PHS-YYSVNVSTDGS 292 (337)
T ss_dssp GEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE-EEESEEEEEETTTTEEEEEEEC-SSC-CCEEEECTTSC
T ss_pred ccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEE-EccccEEEEECCCCcEEEEEcC-CCC-EEEEEECCCCC
Confidence 1123688888888865443 333444455566666666544 4458999999999999998853 333 33 7899999
Q ss_pred EEEEE-eCCcEEEEecC
Q 046773 437 HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 437 ~lasg-~D~~IklWDl~ 452 (453)
+|+++ .|++|+|||..
T Consensus 293 ~l~v~~~~~~i~v~D~~ 309 (337)
T d1pbyb_ 293 TVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEEESBSSEEEEEETT
T ss_pred EEEEEeCCCcEEEEECC
Confidence 99988 99999999975
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=2.1e-19 Score=171.67 Aligned_cols=269 Identities=9% Similarity=0.039 Sum_probs=172.9
Q ss_pred EEec--CCEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeE-EEEeCCCCEEEEEeecCCc
Q 046773 150 LTLS--DLYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQL-IFATLDGDIHVAVIDDVAN 224 (453)
Q Consensus 150 lafs--~~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~L-asgS~D~tIkvWd~~~~g~ 224 (453)
++|+ +++|++++.|++|.|||++|++++++++.++.. .+.+++| ||+.| ++++.|++|++||+.+ +.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~-------~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-~~ 73 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-------GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CK 73 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC-------SSCEEEECTTSSEEEEEETTTTEEEEEETTT-TE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCC-------CcceEEECCCCCEEEEEECCCCcEEEEeCcc-Ce
Confidence 3555 469999999999999999999999998743321 2334666 56665 6777899999999987 41
Q ss_pred ceEEeee----cceecCceEEEEeCCCceeeEEEEe------------eCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 225 ETRTAHF----GSVMDDGVLIDFTGCSRYWVGLYAG------------LAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 225 ~~~~~~~----~~v~~~~~~v~Fs~dg~~~~~LaSg------------S~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
...+... .........++|+|||++ |+.+ ..+..+++||..+++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~v~~s~DG~~---l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------- 136 (346)
T d1jmxb_ 74 NTFHANLSSVPGEVGRSMYSFAISPDGKE---VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-------------- 136 (346)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSE---EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--------------
T ss_pred eeeeecccccccccCCceEEEEEecCCCE---EEEEecCCcceeeeeccCcceEEEEecccceeee--------------
Confidence 1111111 111111124899999997 3332 357889999998877210
Q ss_pred eeeee--ccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEE-----------------
Q 046773 289 MLTEF--TEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAY----------------- 349 (453)
Q Consensus 289 ~l~~h--~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l----------------- 349 (453)
.+..+ ...+..+.+++++.+...+ ..+.+||+.+++.+.....+.. ..-..+++++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (346)
T d1jmxb_ 137 PVRTFPMPRQVYLMRAADDGSLYVAG-PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214 (346)
T ss_dssp CSEEEECCSSCCCEEECTTSCEEEES-SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred EEEeeeccCceEEEEecCCCEEEEeC-CcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeee
Confidence 01111 1223345566666655543 5689999999877655422111 0001122222211
Q ss_pred ---------EEEeCCCccccCcceEEEEEcCCCeeEEE-EEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEE
Q 046773 350 ---------IVVENRELENQNRRLAIVRRVDTFEEVCR-FSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYS 419 (453)
Q Consensus 350 ---------~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~-l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~t 419 (453)
++++.+. .+.+|+..+++.... +..+...+..+.+++++.+++....+.|++||+++++.+..
T Consensus 215 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~ 287 (346)
T d1jmxb_ 215 RFKDDKQDPATADLLY-------GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKA 287 (346)
T ss_dssp EC-------CCCEEEE-------EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEE
T ss_pred eeccCceeEeeccCCc-------eEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEE
Confidence 1112222 678888888765443 34455557778888888888776668999999999999988
Q ss_pred ecccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 420 FRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 420 L~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
+.-.....--+|+|||++|+++ .|++|+|||..
T Consensus 288 ~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~ 321 (346)
T d1jmxb_ 288 ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321 (346)
T ss_dssp EECSSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred EcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECc
Confidence 8532222123889999999999 99999999975
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=3.3e-18 Score=174.31 Aligned_cols=268 Identities=12% Similarity=0.011 Sum_probs=168.5
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeCCCCEEEEEeecCC-cceEE----
Q 046773 156 YLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATLDGDIHVAVIDDVA-NETRT---- 228 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~D~tIkvWd~~~~g-~~~~~---- 228 (453)
++++.+.|++|+|||++|++++++|..|+ .+.+++| ||++|+++|.|++|++||+.+.. ....+
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~---------~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~ 104 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY---------AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 104 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS---------CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC---------CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC
Confidence 46999999999999999999999998653 2455666 57899999999999999998722 11121
Q ss_pred -eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEE---ecccccCCcceeeeeeeeeeccceeEEEEcC
Q 046773 229 -AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVF---VGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS 304 (453)
Q Consensus 229 -~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~---~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~ 304 (453)
.|.+-+. .++|+|||++ .+++++.|++|+|||.++++.. .++..... ..-..+......|.+++
T Consensus 105 ~~~~~~~~----s~~~SpDG~~--l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~s~ 172 (432)
T d1qksa2 105 SEARSIET----SKMEGWEDKY--AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD------EQEYHPEPRVAAILASH 172 (432)
T ss_dssp SEEEEEEE----CCSTTCTTTE--EEEEEEETTEEEEEETTTCCEEEEEECCEECTT------TCCEESCCCEEEEEECS
T ss_pred CCCCCeEE----ecccCCCCCE--EEEEcCCCCeEEEEeCccccceeeeccCCcccc------ceeccCCCceeEEEECC
Confidence 1222111 2578999997 2578899999999999999832 22211000 00112334556778887
Q ss_pred Cc--eEEEEc-CCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE
Q 046773 305 HE--SAVACT-SSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 305 ~~--~~vas~-d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~ 380 (453)
++ ++++.. +++|.+||..+++.+... ..++....-..|+|+|+.+++++.++ ..+.+++.++++.+..+.
T Consensus 173 dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~------~~v~v~d~~~~~~~~~~~ 246 (432)
T d1qksa2 173 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR------NKLVVIDTKEGKLVAIED 246 (432)
T ss_dssp SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG------TEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecccc------ceEEEeecccceEEEEec
Confidence 66 334443 478999999987655432 23333445567889999888877655 278899998887766553
Q ss_pred ec-----CCCeeEEEEeeCCCeEE-EEe-C-CeEEEEECCCC-------eEEEEecccCCc-----------eEE-----
Q 046773 381 LR-----ADRNVNVMGCMNQGYAL-MCV-E-GVIRVWEVEGG-------EYMYSFRERIGE-----------EVI----- 429 (453)
Q Consensus 381 ~~-----~~~v~~~~~~~~~~~ll-s~s-~-~tIrlWD~~tG-------~~l~tL~gh~~~-----------~V~----- 429 (453)
.. +...... ..++++... +.. + ++|.+|+..+. +....++++.+. .+|
T Consensus 247 ~g~~~~~~~~~~~~-~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~ 325 (432)
T d1qksa2 247 TGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL 325 (432)
T ss_dssp CSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT
T ss_pred cCccccccCcccce-ecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccC
Confidence 22 1111111 122333222 222 2 78888887653 233333332110 011
Q ss_pred ---------EEecCCCEEEEE-eCCcEEEEec
Q 046773 430 ---------AFVGDDRHVAAS-CGTNIHLWDF 451 (453)
Q Consensus 430 ---------a~s~d~~~lasg-~D~~IklWDl 451 (453)
...||++.|+++ .|+++|+||+
T Consensus 326 ~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~ 357 (432)
T d1qksa2 326 NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI 357 (432)
T ss_dssp CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECH
T ss_pred CCCCCeeeEEEEEechhhcccccCCceEeccc
Confidence 112777777777 7888888875
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.81 E-value=6.7e-17 Score=151.40 Aligned_cols=237 Identities=9% Similarity=0.019 Sum_probs=167.7
Q ss_pred EEEEEecC--CEE-EEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCe-EEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYL-ACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQ-LIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~L-aSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~-LasgS~D~tIkvWd~~ 220 (453)
+..++||+ ++| ++++.|++|++||+.++++++++..+.. +.+++++ +.. +++++.+..+++|+..
T Consensus 34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (301)
T d1l0qa2 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS---------PQGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (301)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS---------EEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc---------ccccccccccccccccccccceeeecccc
Confidence 57889986 555 7888999999999999999999986542 3556665 444 5566778889999987
Q ss_pred cCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeecccee
Q 046773 221 DVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVG 298 (453)
Q Consensus 221 ~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~ 298 (453)
+ + ...+..+. ....+.|+|||+.+ +++++.|.++.+||..+++... .+. +...+.
T Consensus 105 ~-~~~~~~~~~~~-----~~~~~~~~~dg~~~--~~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~ 161 (301)
T d1l0qa2 105 S-NTVAGTVKTGK-----SPLGLALSPDGKKL--YVTNNGDKTVSVINTVTKAVIN--------------TVS-VGRSPK 161 (301)
T ss_dssp T-TEEEEEEECSS-----SEEEEEECTTSSEE--EEEETTTTEEEEEETTTTEEEE--------------EEE-CCSSEE
T ss_pred c-ceeeeeccccc-----cceEEEeecCCCee--eeeeccccceeeeeccccceee--------------ecc-cCCCce
Confidence 7 4 12222111 12347999999973 5677889999999999987431 111 123456
Q ss_pred EEEEcCCc--eEEEEcC-CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCee
Q 046773 299 RVRVTSHE--SAVACTS-SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEE 375 (453)
Q Consensus 299 ~v~~s~~~--~~vas~d-~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~ 375 (453)
.+.++++. +++++.+ ..+.+|+....+.......+. ...-.+++++++.++.++.+. .+.++++||..+++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~v~~~~~----~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-APSGIAVNPEGTKAYVTNVDK----YFNTVSMIDTGTNKI 236 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-EEEEEEECTTSSEEEEEEECS----SCCEEEEEETTTTEE
T ss_pred EEEeeccccceeeecccccccccccccceeeeecccccC-Ccceeeccccccccccccccc----eeeeeeeeecCCCeE
Confidence 78888765 4555555 568888888765444332221 222356788888877665443 123899999999998
Q ss_pred EEEEEecCCCeeEEEEeeCCCeEE-EEeC-CeEEEEECCCCeEEEEec
Q 046773 376 VCRFSLRADRNVNVMGCMNQGYAL-MCVE-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 376 v~~l~~~~~~v~~~~~~~~~~~ll-s~s~-~tIrlWD~~tG~~l~tL~ 421 (453)
+..+..+ ..+..++++|++++++ +++. ++|++||++|++++.+++
T Consensus 237 ~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 237 TARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 8877654 3478899999999875 5555 999999999999999985
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=1.3e-18 Score=177.46 Aligned_cols=271 Identities=11% Similarity=0.007 Sum_probs=160.2
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEE--Eec---CCCCCccccccceEEEEE--EcCCeE-EEEeCCCCEEE
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVR--TFR---PQHSDRLGQFSRAVSGII--ITDSQL-IFATLDGDIHV 216 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~--tl~---gh~~~~~~~~s~~V~~i~--f~g~~L-asgS~D~tIkv 216 (453)
+..++||+ ++|+++|.|++|++||+.|++... .+. +|.. .+.+.+ +||+.| ++++.|++|+|
T Consensus 64 ~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~--------~~~s~~~SpDG~~l~vs~~~~~~v~i 135 (432)
T d1qksa2 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS--------IETSKMEGWEDKYAIAGAYWPPQYVI 135 (432)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE--------EEECCSTTCTTTEEEEEEEETTEEEE
T ss_pred eeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC--------eEEecccCCCCCEEEEEcCCCCeEEE
Confidence 67889986 699999999999999999987432 222 2211 222222 367765 78999999999
Q ss_pred EEeecCC-cceEEeeecc-----eec--CceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee
Q 046773 217 AVIDDVA-NETRTAHFGS-----VMD--DGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR 288 (453)
Q Consensus 217 Wd~~~~g-~~~~~~~~~~-----v~~--~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~ 288 (453)
||.++.. +.+...+... +.. ....|.|+|||+.+ +++.+.+++|.+||..+++...- .
T Consensus 136 ~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~--~vs~~~~~~i~~~d~~~~~~~~~------------~ 201 (432)
T d1qksa2 136 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF--IVNVKETGKILLVDYTDLNNLKT------------T 201 (432)
T ss_dssp EETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE--EEEETTTTEEEEEETTCSSEEEE------------E
T ss_pred EeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEE--EEEEccCCeEEEEEccCCCcceE------------E
Confidence 9998722 3333333211 111 12347899999863 56778899999999988763210 0
Q ss_pred eeeeeccceeEEEEcCCce--EEEEcC-CcEEEEECCCCceEEEE-eecc--CCeEEEEEE-ecCCEEEEEeC--CCccc
Q 046773 289 MLTEFTEFVGRVRVTSHES--AVACTS-SRVITFDLRNQGMVLGE-RGYG--RGLYVTSVD-VNAEAYIVVEN--RELEN 359 (453)
Q Consensus 289 ~l~~h~~~v~~v~~s~~~~--~vas~d-~tIrlWDl~t~~~~~~~-~g~~--~~~~v~~~~-~~g~~l~s~s~--dg~~~ 359 (453)
++ .+......+.|+|++. ++++.+ .+|.++|+++++..... .+.. +......+. +.......... ++
T Consensus 202 ~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~--- 277 (432)
T d1qksa2 202 EI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD--- 277 (432)
T ss_dssp EE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS---
T ss_pred EE-cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCc---
Confidence 01 2224567799999874 555654 68999999987654332 2210 111112222 22222222222 33
Q ss_pred cCcceEEEEEcCCC-------eeEEEEEe----------cCCC---------------eeEEEEeeCCCeEEEEeC-CeE
Q 046773 360 QNRRLAIVRRVDTF-------EEVCRFSL----------RADR---------------NVNVMGCMNQGYALMCVE-GVI 406 (453)
Q Consensus 360 ~~~~~i~Iw~~~tg-------~~v~~l~~----------~~~~---------------v~~~~~~~~~~~lls~s~-~tI 406 (453)
.+.+|...+. +....+.. +++. ..+ +.++|+..+++++. +++
T Consensus 278 ----~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~s-v~vpDg~~la~~s~d~~~ 352 (432)
T d1qksa2 278 ----SVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS-VAVFDIKAMTGDGSDPEF 352 (432)
T ss_dssp ----EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC-EEEEEGGGCCCSSSCCCE
T ss_pred ----eEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeE-EEEEechhhcccccCCce
Confidence 6677765432 11111111 1111 111 22356666555555 889
Q ss_pred EEEECCCCeEEEEecccCCceEE--EEecCCCEEEEE------eCCcEEEEecC
Q 046773 407 RVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHVAAS------CGTNIHLWDFG 452 (453)
Q Consensus 407 rlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~lasg------~D~~IklWDl~ 452 (453)
|+||+.++..+ .+|... |. +|+|||++|+.+ .|+.|+|||-.
T Consensus 353 k~w~~~~~~~l---~~~~~~-v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~ 402 (432)
T d1qksa2 353 KTLPIAEWAGI---TEGQPR-VVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK 402 (432)
T ss_dssp EEECHHHHHTC---CSSCCE-EEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred Eeccccccccc---CCCCCc-EEEeEECCCCCEEEEEEecCCCCCCcEEEEECC
Confidence 99998776443 356666 55 799999988433 26889999953
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.76 E-value=1.6e-17 Score=167.47 Aligned_cols=112 Identities=12% Similarity=-0.014 Sum_probs=79.7
Q ss_pred eEEEEeCCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCC
Q 046773 204 QLIFATLDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDH 281 (453)
Q Consensus 204 ~LasgS~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~ 281 (453)
.+++.+.|++|+|||+.+ + +.++.++. .+ ..|+|||||++ ||+++.|++|+|||+.|++...
T Consensus 34 ~~V~~~~dg~v~vwD~~t-~~~~~~l~~g~-~~----~~vafSPDGk~---l~~~~~d~~v~vwd~~t~~~~~------- 97 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDS-KKIVKVIDTGY-AV----HISRMSASGRY---LLVIGRDARIDMIDLWAKEPTK------- 97 (426)
T ss_dssp EEEEETTTTEEEEEETTT-CSEEEEEECCS-SE----EEEEECTTSCE---EEEEETTSEEEEEETTSSSCEE-------
T ss_pred EEEEEcCCCEEEEEECCC-CcEEEEEeCCC-Ce----eEEEECCCCCE---EEEEeCCCCEEEEEccCCceeE-------
Confidence 468899999999999998 5 34444332 12 25899999997 7899999999999999987211
Q ss_pred cceeeeeeeeeeccceeEEEEcCCce--EEEE-cCCcEEEEECCCCceEEEEeec
Q 046773 282 NTVMGWRMLTEFTEFVGRVRVTSHES--AVAC-TSSRVITFDLRNQGMVLGERGY 333 (453)
Q Consensus 282 ~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas-~d~tIrlWDl~t~~~~~~~~g~ 333 (453)
+.-+....+|...+.++.|+|++. ++++ .++++++||++++.++....++
T Consensus 98 --~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~ 150 (426)
T d1hzua2 98 --VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 150 (426)
T ss_dssp --EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred --EEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeecc
Confidence 000122346666677778888774 3444 5689999999998876655433
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.76 E-value=2.2e-17 Score=158.59 Aligned_cols=184 Identities=15% Similarity=0.029 Sum_probs=144.7
Q ss_pred EEEeC-CCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEcC--Cc
Q 046773 241 IDFTG-CSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACTS--SR 315 (453)
Q Consensus 241 v~Fs~-dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~d--~t 315 (453)
-+||| ||++ +|+++ ++.|.|||++++++.. ..|...|.+++|+|++. ++++.+ ..
T Consensus 8 ~~fSP~dG~~---~a~~~-~g~v~v~d~~~~~~~~----------------~~~~~~v~~~~~spDg~~l~~~~~~~g~~ 67 (360)
T d1k32a3 8 EDFSPLDGDL---IAFVS-RGQAFIQDVSGTYVLK----------------VPEPLRIRYVRRGGDTKVAFIHGTREGDF 67 (360)
T ss_dssp EEEEECGGGC---EEEEE-TTEEEEECTTSSBEEE----------------CSCCSCEEEEEECSSSEEEEEEEETTEEE
T ss_pred ccccCCCCCE---EEEEE-CCeEEEEECCCCcEEE----------------ccCCCCEEEEEECCCCCEEEEEEcCCCCE
Confidence 47999 9997 56655 4689999999888432 15678899999999884 344544 37
Q ss_pred EEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCC
Q 046773 316 VITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQ 395 (453)
Q Consensus 316 IrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~ 395 (453)
|++||+++++. .++..|...+...+|+|+++.+++++.++ .+++|+.+++++...+..+...+..+.+++++
T Consensus 68 v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 139 (360)
T d1k32a3 68 LGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRF-------EIMTVDLETGKPTVIERSREAMITDFTISDNS 139 (360)
T ss_dssp EEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTS-------EEEEEETTTCCEEEEEECSSSCCCCEEECTTS
T ss_pred EEEEECCCCcE-EEeeCCCceEEeeeecccccccceecccc-------ccccccccccceeeeeecccccccchhhccce
Confidence 99999998754 44455666666778899999999999999 99999999999888888777778889999999
Q ss_pred CeEEEEe----------C-CeEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 396 GYALMCV----------E-GVIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 396 ~~lls~s----------~-~tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
++++.+. . +.+++||+.++++......+......+++|||++|+++ .|+.+++||..
T Consensus 140 ~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~ 208 (360)
T d1k32a3 140 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 208 (360)
T ss_dssp CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred eeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccccc
Confidence 9987543 1 57999999999887655433322123789999999988 99999999863
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.74 E-value=2.6e-15 Score=146.12 Aligned_cols=274 Identities=10% Similarity=-0.031 Sum_probs=167.9
Q ss_pred CCCCCCCeEEEEEEecC--CEEEE-----EeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEe-
Q 046773 138 DVDNPDGLTCRCLTLSD--LYLAC-----GFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFAT- 209 (453)
Q Consensus 138 gh~~~d~v~v~~lafs~--~~LaS-----GS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS- 209 (453)
+|..| +.+++|++ ++++. .+.+.+|.+||.+||+.+.++.++... . -++++||+.|+.++
T Consensus 18 ~~~~p----~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~-------~-~a~SpDG~~l~va~~ 85 (373)
T d2madh_ 18 AADGP----TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-------N-PVAAHSGSEFALAST 85 (373)
T ss_pred cCCCC----ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc-------c-EEEcCCCCEEEEEee
Confidence 45544 66777876 45543 234567999999999999998764321 1 12556788887764
Q ss_pred ---------CCCCEEEEEeecCC--cceEEeeecc---eecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEec
Q 046773 210 ---------LDGDIHVAVIDDVA--NETRTAHFGS---VMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVG 275 (453)
Q Consensus 210 ---------~D~tIkvWd~~~~g--~~~~~~~~~~---v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g 275 (453)
.|++|+|||..+ + ......+... +......+.|++||+.+. ++....+..+.+|+..+++...
T Consensus 86 ~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~-v~~~~~~~~~~~~~~~~~~~~~- 162 (373)
T d2madh_ 86 SFSRIAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLL-FFQFAAGPAVGLVVQGGSSDDQ- 162 (373)
T ss_pred cCCcccccccceEEEEEECCC-CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEE-EEEEcCCCceEEeeccCCeEEE-
Confidence 467899999987 4 1122222111 111222478999998732 4445667889999998876321
Q ss_pred ccccCCcceeeeeeeeeeccceeEEEEcCCc--e-EEEEcCCcEEEEECCCCceEEEEee----ccCCeEEEEEEecCCE
Q 046773 276 GDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--S-AVACTSSRVITFDLRNQGMVLGERG----YGRGLYVTSVDVNAEA 348 (453)
Q Consensus 276 ~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~-~vas~d~tIrlWDl~t~~~~~~~~g----~~~~~~v~~~~~~g~~ 348 (453)
+.....++.+++++ . ++.+.|+++.+||..++........ .........+.++++.
T Consensus 163 -----------------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T d2madh_ 163 -----------------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred -----------------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc
Confidence 12234456677654 3 4456789999999998866544321 1112222334455543
Q ss_pred -EEEEeCCCccccCcceEEEEEcCCCeeEEE--E----------EecCCCeeEEEEeeCCCeEE----------EEeC-C
Q 046773 349 -YIVVENRELENQNRRLAIVRRVDTFEEVCR--F----------SLRADRNVNVMGCMNQGYAL----------MCVE-G 404 (453)
Q Consensus 349 -l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~--l----------~~~~~~v~~~~~~~~~~~ll----------s~s~-~ 404 (453)
++..+.++ .+.+++..+++.... . ...+.....+.+++++..+. .... +
T Consensus 226 ~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 298 (373)
T d2madh_ 226 RIVWPVYSG-------KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred eEEEecCCc-------eEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCC
Confidence 44555666 778887776542211 1 11122223344444444332 2233 7
Q ss_pred eEEEEECCCCeEEEEecccCCceEE--EEecCCCE--EEEE-eCCcEEEEecC
Q 046773 405 VIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRH--VAAS-CGTNIHLWDFG 452 (453)
Q Consensus 405 tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~--lasg-~D~~IklWDl~ 452 (453)
+|.+||+.+++.+.++... .. +. +|+|||+. ++++ .|++|+|||+.
T Consensus 299 ~v~~~d~~t~~~~~~~~~~-~~-~~~~a~spDG~~~l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 299 EVTSVTGLVGQTSSQISLG-HD-VDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred eEEEEECCCCcEEEEecCC-CC-eeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence 9999999999999988633 33 44 78999985 3677 99999999975
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2.4e-15 Score=142.96 Aligned_cols=264 Identities=10% Similarity=0.048 Sum_probs=160.6
Q ss_pred EEEEEeCCCcEEEEECCCCeEE---EEecCCCCCccccccceEEEEEE--cCCeE-EEEeCCCCEEEEEeecCC-cceEE
Q 046773 156 YLACGFADGAVRLFDLTTRLHV---RTFRPQHSDRLGQFSRAVSGIII--TDSQL-IFATLDGDIHVAVIDDVA-NETRT 228 (453)
Q Consensus 156 ~LaSGS~D~TIrlWD~~tg~~~---~tl~gh~~~~~~~~s~~V~~i~f--~g~~L-asgS~D~tIkvWd~~~~g-~~~~~ 228 (453)
.+|+++.|++|+|||+.+...+ +++. |.. .+.+|+| ||+.| ++++.|++|++|+++... ...+.
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~-~~~--------~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~ 76 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPG--------QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA 76 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSS--------CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEc-CCC--------CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe
Confidence 4688999999999999765443 4443 332 3445665 56777 455668999999998632 22333
Q ss_pred eeecceecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCce
Q 046773 229 AHFGSVMDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES 307 (453)
Q Consensus 229 ~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~ 307 (453)
.+... ......++|+|||++ |++++ .+.+|++|+........- .....+...+.++.|++++.
T Consensus 77 ~~~~~-~~~p~~l~~spDg~~---l~v~~~~~~~v~~~~~~~~~~~~~------------~~~~~~~~~~~~v~~s~d~~ 140 (333)
T d1ri6a_ 77 AESAL-PGSLTHISTDHQGQF---VFVGSYNAGNVSVTRLEDGLPVGV------------VDVVEGLDGCHSANISPDNR 140 (333)
T ss_dssp EEEEC-SSCCSEEEECTTSSE---EEEEETTTTEEEEEEEETTEEEEE------------EEEECCCTTBCCCEECTTSS
T ss_pred eeccc-CCCceEEEEcCCCCE---EeecccCCCceeeeccccccceec------------ccccCCCccceEEEeeecce
Confidence 33211 112234899999997 55555 578999999887662210 11223445677788998774
Q ss_pred --EEEEc-CCcEEEEECCCCceEEEE------eeccCCeEEEEEEecCCEEEEEe-CCCccccCcceEEEEEcCCC----
Q 046773 308 --AVACT-SSRVITFDLRNQGMVLGE------RGYGRGLYVTSVDVNAEAYIVVE-NRELENQNRRLAIVRRVDTF---- 373 (453)
Q Consensus 308 --~vas~-d~tIrlWDl~t~~~~~~~------~g~~~~~~v~~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~tg---- 373 (453)
++++. +..|.+|++.+....... ...+.......|++++..+.... ..+ ...++++...
T Consensus 141 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~ 213 (333)
T d1ri6a_ 141 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS-------SVDVWELKDPHGNI 213 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT-------EEEEEESSCTTSCC
T ss_pred eeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccC-------ceEEEeecccccce
Confidence 33343 367999999875432221 11222223345666666655443 333 6677776532
Q ss_pred eeEEEEEecC------CCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEeccc---CCceEE--EEecCCCEEEE
Q 046773 374 EEVCRFSLRA------DRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFRER---IGEEVI--AFVGDDRHVAA 440 (453)
Q Consensus 374 ~~v~~l~~~~------~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~gh---~~~~V~--a~s~d~~~las 440 (453)
.....+...+ ......++++++++++.... +++++|++....++..+.++ .+. ++ +|+|||++|+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~a~spDGk~l~v 292 (333)
T d1ri6a_ 214 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIA 292 (333)
T ss_dssp EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEE
T ss_pred eeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCC-eeEEEEeCCCCEEEE
Confidence 2222332222 22345667888888776654 89999999876554444332 222 32 88999998765
Q ss_pred E--eCCcEEEEecC
Q 046773 441 S--CGTNIHLWDFG 452 (453)
Q Consensus 441 g--~D~~IklWDl~ 452 (453)
+ .+++|+||++.
T Consensus 293 a~~~~~~v~v~~id 306 (333)
T d1ri6a_ 293 AGQKSHHISVYEIV 306 (333)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred EECCCCeEEEEEEE
Confidence 5 57899999763
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=5e-15 Score=140.15 Aligned_cols=253 Identities=11% Similarity=0.037 Sum_probs=152.5
Q ss_pred EEEEEecC--CEE-EEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeC-----------
Q 046773 147 CRCLTLSD--LYL-ACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATL----------- 210 (453)
Q Consensus 147 v~~lafs~--~~L-aSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~----------- 210 (453)
+.+++|++ ++| ++++.|++|++||+.|++++.++..+.....+ ..+.+++| +++.++.++.
T Consensus 36 ~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~---~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T d1pbyb_ 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV---KSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE---ECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred ccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc---cceeeEEEcCCCcEEEEeecCCcceeeeccc
Confidence 45788875 555 78899999999999999999988764322111 11123444 4667776653
Q ss_pred -CCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe---ccccc-----CC
Q 046773 211 -DGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV---GGDLT-----DH 281 (453)
Q Consensus 211 -D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~---g~~l~-----~~ 281 (453)
+..+.+||..+ + ........ ......++|+|||++ |++++. .+.+||+.+++... .+... .+
T Consensus 113 ~~~~~~~~d~~~-~-~~~~~~~~--~~~~~~~~~s~dg~~---l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 183 (337)
T d1pbyb_ 113 QPTRVALYDAET-L-SRRKAFEA--PRQITMLAWARDGSK---LYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQP 183 (337)
T ss_dssp CCCEEEEEETTT-T-EEEEEEEC--CSSCCCEEECTTSSC---EEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCC
T ss_pred cccceeeccccC-C-eEEEeccc--cCCceEEEEcCCCCE---EEEEcC--CcceeeeecCcEEEEeecCCccccceecC
Confidence 55677777766 3 11111110 011124899999997 566654 47889999987321 11100 01
Q ss_pred cceeeeeeee-eeccceeEEEEc--CCceEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCc
Q 046773 282 NTVMGWRMLT-EFTEFVGRVRVT--SHESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENREL 357 (453)
Q Consensus 282 ~~v~~w~~l~-~h~~~v~~v~~s--~~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~ 357 (453)
+....|.... .+.......... .......+.+..+.+||+.++.+.... ..+........+.+++..+.. .++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 260 (337)
T d1pbyb_ 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYN- 260 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE--EES-
T ss_pred CcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE--ccc-
Confidence 1110000000 000000000000 111111122346999999998765543 344444444455566655543 356
Q ss_pred cccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEec
Q 046773 358 ENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFR 421 (453)
Q Consensus 358 ~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~ 421 (453)
++++||+.+++.+..+. .+..+..++++++++++++++. ++|+|||+++++.+.++.
T Consensus 261 ------~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 261 ------VLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp ------EEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred ------cEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence 99999999999888875 3556889999999999888766 999999999999998875
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=2e-14 Score=138.21 Aligned_cols=274 Identities=10% Similarity=-0.097 Sum_probs=159.8
Q ss_pred EEecCCEEEEE-----eCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEE----------eCCCCE
Q 046773 150 LTLSDLYLACG-----FADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFA----------TLDGDI 214 (453)
Q Consensus 150 lafs~~~LaSG-----S~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~Lasg----------S~D~tI 214 (453)
.+.++++++.. +.+.+|.+||+.+|+.+.++..+... . -++++||+.|+.+ +.|++|
T Consensus 9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~-------~-~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-------N-PVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-------E-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC-------c-eEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence 33455555432 46778999999999999998754321 1 1244567777654 457899
Q ss_pred EEEEeecCC--cceEEeeec---ceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeee
Q 046773 215 HVAVIDDVA--NETRTAHFG---SVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRM 289 (453)
Q Consensus 215 kvWd~~~~g--~~~~~~~~~---~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~ 289 (453)
++||..+ + ......+.. .+..+...++|+|||+++ .+++.+.+..+.+||..+++...- +..+...
T Consensus 81 ~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~-~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----- 151 (355)
T d2bbkh_ 81 EVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL-LFYQFSPAPAVGVVDLEGKAFKRM--LDVPDCY----- 151 (355)
T ss_dssp EEECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEE-EEEECSSSCEEEEEETTTTEEEEE--EECCSEE-----
T ss_pred EEEECCC-CCEEEEEecCCcceeecCCCCceEEEecCCCee-EEecCCCCceeeeeecCCCcEeeE--EecCCcc-----
Confidence 9999987 4 222222211 111122247999999974 245556788999999999984310 0000000
Q ss_pred eeeeccceeEEEEcCCceEE--EE-cCCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEE
Q 046773 290 LTEFTEFVGRVRVTSHESAV--AC-TSSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAI 366 (453)
Q Consensus 290 l~~h~~~v~~v~~s~~~~~v--as-~d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~ 366 (453)
...-......+.+++++... .. .+.++.+.+..+... .+........+...+..++.++.++ .+.
T Consensus 152 ~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 219 (355)
T d2bbkh_ 152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTG-------KIH 219 (355)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTS-------EEE
T ss_pred eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCC-------eEE
Confidence 00001122334444443221 11 123445555444321 1111111134566677888888888 999
Q ss_pred EEEcCCCeeEE--EEEe----------cCCCeeEEEEeeCCCeEEEEeC-----------CeEEEEECCCCeEEEEeccc
Q 046773 367 VRRVDTFEEVC--RFSL----------RADRNVNVMGCMNQGYALMCVE-----------GVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 367 Iw~~~tg~~v~--~l~~----------~~~~v~~~~~~~~~~~lls~s~-----------~tIrlWD~~tG~~l~tL~gh 423 (453)
+|+...++... .... .++....+.+++++..+..... ++|++||+.+++.+.+++.+
T Consensus 220 v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~ 299 (355)
T d2bbkh_ 220 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG 299 (355)
T ss_dssp EEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred EEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC
Confidence 99988764321 1111 1233345677788877664421 48999999999999888643
Q ss_pred CCceEEEEecCCC--EEEEE-eCCcEEEEecC
Q 046773 424 IGEEVIAFVGDDR--HVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 424 ~~~~V~a~s~d~~--~lasg-~D~~IklWDl~ 452 (453)
....--+|+|||+ .++++ .|++|+|||+.
T Consensus 300 ~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~ 331 (355)
T d2bbkh_ 300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331 (355)
T ss_dssp EEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence 2221127889998 34677 89999999974
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.62 E-value=4.6e-13 Score=129.85 Aligned_cols=260 Identities=10% Similarity=0.035 Sum_probs=150.8
Q ss_pred EEEecC--CEEEEE----------eCCCcEEEEECCCCeEEEEecCCCCCcccccc-ceEEEEEEcCCeEEEE--eCCCC
Q 046773 149 CLTLSD--LYLACG----------FADGAVRLFDLTTRLHVRTFRPQHSDRLGQFS-RAVSGIIITDSQLIFA--TLDGD 213 (453)
Q Consensus 149 ~lafs~--~~LaSG----------S~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s-~~V~~i~f~g~~Lasg--S~D~t 213 (453)
.++|++ ++|+.+ +.|++|+|||+.|++++..+..+......... ..-..++.+++.++.. ..+..
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 149 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence 355654 566665 45689999999999999888765432110000 0001133455544433 33455
Q ss_pred EEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeee
Q 046773 214 IHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEF 293 (453)
Q Consensus 214 IkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h 293 (453)
+.+|+... + . ...+.. ....+.|+|+|+. .+++.+.|+++.+||..+++........ ....+.
T Consensus 150 ~~~~~~~~-~-~-~~~~~~----~~~~~~~s~~g~~--~~v~~~~dg~~~~~~~~~~~~~~~~~~~--------~~~~~~ 212 (373)
T d2madh_ 150 VGLVVQGG-S-S-DDQLLS----SPTCYHIHPGAPS--TFYLLCAQGGLAKTDHAGGAAGAGLVGA--------MLTAAQ 212 (373)
T ss_pred eEEeeccC-C-e-EEEEec----cceeEEEecCCCc--EEEEEcCCCeEEEEEcCCceeeEEEeee--------ccccCc
Confidence 66666654 1 1 111111 1124789999986 3678899999999999988732100000 000111
Q ss_pred ccceeEEEEcCCceEEE-EcCCcEEEEECCCCceEEEE--eeccC----------CeEEEEEEecCCEEEEEeCCCc---
Q 046773 294 TEFVGRVRVTSHESAVA-CTSSRVITFDLRNQGMVLGE--RGYGR----------GLYVTSVDVNAEAYIVVENREL--- 357 (453)
Q Consensus 294 ~~~v~~v~~s~~~~~va-s~d~tIrlWDl~t~~~~~~~--~g~~~----------~~~v~~~~~~g~~l~s~s~dg~--- 357 (453)
......+.++++...+. +.++++.+|+..++...... ..+.. .....++++++..++....++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 292 (373)
T d2madh_ 213 NLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred cceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEE
Confidence 11223345566665554 45678999998876432211 11111 1112345555555443332220
Q ss_pred cccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEE--EEeC-CeEEEEECCCCeEEEEecccCCc
Q 046773 358 ENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYAL--MCVE-GVIRVWEVEGGEYMYSFRERIGE 426 (453)
Q Consensus 358 ~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~ll--s~s~-~tIrlWD~~tG~~l~tL~gh~~~ 426 (453)
....++.+.+||..+++.+..+. .+..+..+.+++|+++++ +.+. ++|+|||++||+.++++.++...
T Consensus 293 ~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~ 363 (373)
T d2madh_ 293 LHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSG 363 (373)
T ss_pred eecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCC
Confidence 01112388999999999888775 345578899999998754 3333 99999999999999999876444
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.60 E-value=8.9e-14 Score=131.82 Aligned_cols=258 Identities=10% Similarity=-0.021 Sum_probs=152.5
Q ss_pred EEEEEecC--CE-EEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEe------------
Q 046773 147 CRCLTLSD--LY-LACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFAT------------ 209 (453)
Q Consensus 147 v~~lafs~--~~-LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS------------ 209 (453)
+.+++|++ ++ +++++.|++|++||+.+++.+.++...... ......+.+++| ||+.|+.++
T Consensus 42 p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~--~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~ 119 (346)
T d1jmxb_ 42 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP--GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119 (346)
T ss_dssp SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST--TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred cceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc--cccCCceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence 46788876 45 588889999999999999999887642211 000111223455 566776554
Q ss_pred CCCCEEEEEeecCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEe---cccc-----c
Q 046773 210 LDGDIHVAVIDDVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFV---GGDL-----T 279 (453)
Q Consensus 210 ~D~tIkvWd~~~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~---g~~l-----~ 279 (453)
.+..+.+|+..+ + ..++..+... .....+.++++++. +++ +..+.+||+.+++... .+.. .
T Consensus 120 ~~~~i~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (346)
T d1jmxb_ 120 KPPRLEVFSTAD-GLEAKPVRTFPMP--RQVYLMRAADDGSL---YVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYS 190 (346)
T ss_dssp CCCEEEEEEGGG-GGGBCCSEEEECC--SSCCCEEECTTSCE---EEE---SSSEEEECTTTCCEEEEECSTTCCCTTBC
T ss_pred CcceEEEEeccc-ceeeeEEEeeecc--CceEEEEecCCCEE---EEe---CCcceEEEccCCCEEEEEecCCCccceEE
Confidence 466788888766 3 2223322211 01113567777764 233 3468999999988332 1110 0
Q ss_pred CCcceeeeeeeeeecccee----EEEEcCCc--eEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEE
Q 046773 280 DHNTVMGWRMLTEFTEFVG----RVRVTSHE--SAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVV 352 (453)
Q Consensus 280 ~~~~v~~w~~l~~h~~~v~----~v~~s~~~--~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~ 352 (453)
.+.....|..- .....+. ...+.... ...++.+..+.+||+.++...... ..+........+++++..++..
T Consensus 191 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (346)
T d1jmxb_ 191 APDVLYFWPHQ-SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG 269 (346)
T ss_dssp CCBCCCCCCCC-CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE
T ss_pred eccccEEEEEe-cCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEe
Confidence 01100001000 0000000 01111111 122233467999999998765443 4454444444556666655544
Q ss_pred eCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCC
Q 046773 353 ENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIG 425 (453)
Q Consensus 353 s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~ 425 (453)
.++ .+++||..+++.+..+. .+..+..+++++|++++++++. ++|+|||++|++++.+++-+.+
T Consensus 270 -~~~-------~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 270 -VLN-------RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp -EES-------EEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred -cCC-------eEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence 345 78999999999887775 3455889999999999988776 9999999999999999875543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.50 E-value=4.8e-13 Score=131.03 Aligned_cols=258 Identities=9% Similarity=-0.073 Sum_probs=145.0
Q ss_pred EEeCCCc--EEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEe----------CCCCEEEEEeecCCc--
Q 046773 159 CGFADGA--VRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFAT----------LDGDIHVAVIDDVAN-- 224 (453)
Q Consensus 159 SGS~D~T--IrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS----------~D~tIkvWd~~~~g~-- 224 (453)
+.+.+++ |.+||..+++.+.++.++.. ...++++||+.|+..+ .|++|++||..+ +.
T Consensus 39 ~~~~~g~~~~~~~d~~~~~~~~~~~~~~~--------~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t-~~~~ 109 (368)
T d1mdah_ 39 PAYFAGTTENWVSCAGCGVTLGHSLGAFL--------SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPI 109 (368)
T ss_dssp CTTTCSSEEEEEEETTTTEEEEEEEECTT--------CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEE
T ss_pred eccCCCcceEEEEeCCCCcEEEEEeCCCC--------CcceECCCCCEEEEEcccCccccccccCCeEEEEECCC-CcEe
Confidence 3555666 55669999999999876542 1223556677777654 478899999887 41
Q ss_pred ceEEeeeccee---cCceEEEEeCCCceeeEEEEee-CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE
Q 046773 225 ETRTAHFGSVM---DDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 225 ~~~~~~~~~v~---~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
.....+..... .....++|+|||++ |+.++ .+++|.+||+++++...- +..+..... .
T Consensus 110 ~~i~~p~~~~~~~g~~p~~~a~SpDGk~---l~va~~~~~~v~~~d~~~~~~~~~--------------~~~~~~~~~-~ 171 (368)
T d1mdah_ 110 ADIELPDAPRFSVGPRVHIIGNCASSAC---LLFFLFGSSAAAGLSVPGASDDQL--------------TKSASCFHI-H 171 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSC---EEEEECSSSCEEEEEETTTEEEEE--------------EECSSCCCC-E
T ss_pred eeecCCccceecccCCccceEECCCCCE---EEEEeCCCCeEEEEECCCCcEeEE--------------eeccCcceE-c
Confidence 22222211110 11123899999998 44444 679999999999984320 101111000 0
Q ss_pred EEcCCceEEEEcCCcEEEEECCCCceEEEE----eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeE
Q 046773 301 RVTSHESAVACTSSRVITFDLRNQGMVLGE----RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 301 ~~s~~~~~vas~d~tIrlWDl~t~~~~~~~----~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
...+...+..|.|+++.+|++......... ....+...+....+..+..+..+..+ .+.+.++..++..
T Consensus 172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~v~~~~~~~~~~~ 244 (368)
T d1mdah_ 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVAS-------SILQGDIPAAGAT 244 (368)
T ss_dssp EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSS-------CCEEEECCSSCCE
T ss_pred cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCC-------CEEEEeecCCceE
Confidence 011222333356778888887765432211 00111111122333334344444445 5555555544322
Q ss_pred EEEE------------ecCCCeeEEEEeeCCCeEEEEe---------C-CeEEEEECCCCeEEEEecccCCceEE--EEe
Q 046773 377 CRFS------------LRADRNVNVMGCMNQGYALMCV---------E-GVIRVWEVEGGEYMYSFRERIGEEVI--AFV 432 (453)
Q Consensus 377 ~~l~------------~~~~~v~~~~~~~~~~~lls~s---------~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s 432 (453)
.... ..++..+.++++++++.+.... . .+|++||..+++.+.++... .. +. +|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~-~~~~a~s 322 (368)
T d1mdah_ 245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HD-SDAIIAA 322 (368)
T ss_dssp EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EE-ECEEEEC
T ss_pred EEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-Cc-eeEEEEC
Confidence 1110 1122334567777777665432 1 47999999999999988643 22 43 789
Q ss_pred cCCCE--EEEE-eCCcEEEEecC
Q 046773 433 GDDRH--VAAS-CGTNIHLWDFG 452 (453)
Q Consensus 433 ~d~~~--lasg-~D~~IklWDl~ 452 (453)
|||+. ++++ .|++|+|||..
T Consensus 323 pDG~~~ly~s~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 323 QDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp CSSSCEEEEEETTTTEEEEEESS
T ss_pred CCCCEEEEEEeCCCCeEEEEECC
Confidence 99973 3667 89999999974
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=4.5e-15 Score=121.25 Aligned_cols=82 Identities=22% Similarity=0.507 Sum_probs=71.3
Q ss_pred cccccCCcchHHHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhhccCC------------CCc
Q 046773 36 AVNEVWPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRRIWGR------------TNL 103 (453)
Q Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~~~~~------------~~~ 103 (453)
.++..++.||++.||.|+..+|++||+ +.+|+.+++||++|+.+++++.+|+++|.+.+.. ...
T Consensus 9 ~~~p~~~~D~i~~LP~Eil~~Ils~Ld----~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~ 84 (102)
T d2ovrb1 9 VIEPQFQRDFISLLPKELALYVLSFLE----PKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGF 84 (102)
T ss_dssp HHCCCCCCSTTTSSCHHHHHHHHTTSC----HHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCC
T ss_pred HcCchhccCChhhCCHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCC
Confidence 467889999999999999999999987 8899999999999999999999999999875411 123
Q ss_pred CcchhHHHHHHHhhhhhc
Q 046773 104 LHATWRDEYIYRHRTAQN 121 (453)
Q Consensus 104 ~~~~Wk~~y~~~~~~~~n 121 (453)
...+||..|++++++.+|
T Consensus 85 ~~~~WK~~Y~~~~~l~~n 102 (102)
T d2ovrb1 85 IHSPWKSAYIRQHRIDTN 102 (102)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhcC
Confidence 456899999999998877
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=2.6e-12 Score=123.12 Aligned_cols=240 Identities=10% Similarity=0.028 Sum_probs=141.9
Q ss_pred EeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEe--CCCCEEEEEeecCC--cceEEeeecc
Q 046773 160 GFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFAT--LDGDIHVAVIDDVA--NETRTAHFGS 233 (453)
Q Consensus 160 GS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS--~D~tIkvWd~~~~g--~~~~~~~~~~ 233 (453)
++.|++|++||+.+++.++++..+......... ....++| +++.++.++ .+..+.+|+..+ + +..+..+...
T Consensus 74 g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 151 (355)
T d2bbkh_ 74 GERTDYVEVFDPVTLLPTADIELPDAPRFLVGT-YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-KAFKRMLDVPDCY 151 (355)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC-CGGGEEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECCSEE
T ss_pred cCCCCEEEEEECCCCCEEEEEecCCcceeecCC-CCceEEEecCCCeeEEecCCCCceeeeeecCC-CcEeeEEecCCcc
Confidence 456899999999999999887654332111100 1112444 567776654 456788999877 4 2222222110
Q ss_pred -e--ecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEc-CCc-eE
Q 046773 234 -V--MDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVT-SHE-SA 308 (453)
Q Consensus 234 -v--~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s-~~~-~~ 308 (453)
+ ......++|++||+.+ ++....+.++.+.+..+... .+...+....+. ++. ++
T Consensus 152 ~~~~~~~~~~~~~~~dg~~~--~v~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 210 (355)
T d2bbkh_ 152 HIFPTAPDTFFMHCRDGSLA--KVAFGTEGTPEITHTEVFHP-------------------EDEFLINHPAYSQKAGRLV 210 (355)
T ss_dssp EEEEEETTEEEEEETTSCEE--EEECCSSSCCEEEECCCCSC-------------------TTSCBCSCCEEETTTTEEE
T ss_pred eEeecCCcceEEEcCCCCEE--EEEecCCCeEEEEecccccc-------------------eecceeeeccccCCCCeEE
Confidence 0 1122346778887752 33344556666666655431 111122333333 333 34
Q ss_pred EEEcCCcEEEEECCCCceEEE--Eeecc----------CCeEEEEEEecCCEEEEEeCCCc---cccCcceEEEEEcCCC
Q 046773 309 VACTSSRVITFDLRNQGMVLG--ERGYG----------RGLYVTSVDVNAEAYIVVENREL---ENQNRRLAIVRRVDTF 373 (453)
Q Consensus 309 vas~d~tIrlWDl~t~~~~~~--~~g~~----------~~~~v~~~~~~g~~l~s~s~dg~---~~~~~~~i~Iw~~~tg 373 (453)
.++.++++.+||+.+++.... ..++. ......++++++..++..+.++. .......+.+||..++
T Consensus 211 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~ 290 (355)
T d2bbkh_ 211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG 290 (355)
T ss_dssp EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred EecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC
Confidence 445678999999998764321 11111 11123567778887766554431 1112347899999999
Q ss_pred eeEEEEEecCCCeeEEEEeeCCCeE-EEEe-C-CeEEEEECCCCeEEEEeccc
Q 046773 374 EEVCRFSLRADRNVNVMGCMNQGYA-LMCV-E-GVIRVWEVEGGEYMYSFRER 423 (453)
Q Consensus 374 ~~v~~l~~~~~~v~~~~~~~~~~~l-ls~s-~-~tIrlWD~~tG~~l~tL~gh 423 (453)
+.+.++... ..+..++++||++++ ++++ . ++|+|||++||+.++++.++
T Consensus 291 ~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~ 342 (355)
T d2bbkh_ 291 ERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342 (355)
T ss_dssp CEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred cEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence 988777543 336788999999854 3443 3 99999999999999999765
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.8e-15 Score=123.56 Aligned_cols=82 Identities=23% Similarity=0.388 Sum_probs=68.5
Q ss_pred ccCCcchHHHHHH----HHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhHHHhhhhcc---------------C
Q 046773 39 EVWPEPFVEALAA----QVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLWHRLTRRIW---------------G 99 (453)
Q Consensus 39 ~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w~~~~~~~~---------------~ 99 (453)
.+++.||++.||. |++++|++||+ +++|+.++|||+.|+.++.++.+|+++|.+.+ .
T Consensus 4 ~~l~~D~i~~LP~~l~~EI~~~Ils~Ld----~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~~~~~~~~~~~~~~~~~ 79 (118)
T d1p22a1 4 IMLQRDFITALPARGLDHIAENILSYLD----AKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWG 79 (118)
T ss_dssp CCSCCCHHHHTGGGTCHHHHHHHHTTCC----HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGG
T ss_pred HHHcccHHHHCCCCChHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhccccccchhhhcccccc
Confidence 4788999999997 99999999987 88999999999999999999999999986531 1
Q ss_pred CC----------Cc----CcchhHHHHHHHhhhhhcccc
Q 046773 100 RT----------NL----LHATWRDEYIYRHRTAQNFRT 124 (453)
Q Consensus 100 ~~----------~~----~~~~Wk~~y~~~~~~~~nw~~ 124 (453)
.. .+ ...+||..|++++.+++|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~yk~~y~~r~~l~~nWr~ 118 (118)
T d1p22a1 80 QYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRC 118 (118)
T ss_dssp GGCC---------CCSHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccCcccccCCCccccccchHHHHHHHHHHHHcCCC
Confidence 00 01 124689999999999999973
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=1.2e-10 Score=109.82 Aligned_cols=244 Identities=11% Similarity=0.053 Sum_probs=143.6
Q ss_pred EEEEEecC--CEE-EEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeC-CCCEEEEEee
Q 046773 147 CRCLTLSD--LYL-ACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATL-DGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~L-aSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~-D~tIkvWd~~ 220 (453)
+.+|+||+ ++| ++++.|++|++|++.+.....++.++..... .+..++| ||+.|++++. +.+|++|+..
T Consensus 39 v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~-----~p~~l~~spDg~~l~v~~~~~~~v~~~~~~ 113 (333)
T d1ri6a_ 39 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-----SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 113 (333)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-----CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC-----CceEEEEcCCCCEEeecccCCCceeeeccc
Confidence 57888886 466 6666799999999988765555543322111 2234555 5778888775 6789999887
Q ss_pred cCCc-ceEE--eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccc
Q 046773 221 DVAN-ETRT--AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEF 296 (453)
Q Consensus 221 ~~g~-~~~~--~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~ 296 (453)
.... .... .+... ...+.|+||+++. +.....+..|.+|+..+.. ...... . .........
T Consensus 114 ~~~~~~~~~~~~~~~~----~~~v~~s~d~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~--------~-~~~~~~g~~ 178 (333)
T d1ri6a_ 114 DGLPVGVVDVVEGLDG----CHSANISPDNRTL--WVPALKQDRICLFTVSDDGHLVAQDP--------A-EVTTVEGAG 178 (333)
T ss_dssp TTEEEEEEEEECCCTT----BCCCEECTTSSEE--EEEEGGGTEEEEEEECTTSCEEEEEE--------E-EEECSTTCC
T ss_pred cccceecccccCCCcc----ceEEEeeecceee--eccccccceeeEEEeccCCcceeeec--------e-eeeeecCCC
Confidence 6211 1111 11111 1247899999972 3344466789999988765 211000 0 001111234
Q ss_pred eeEEEEcCCceEE--EEc-CCcEEEEECCCCceEE----EE----eec--cCCeEEEEEEecCCEEEEEe-CCCccccCc
Q 046773 297 VGRVRVTSHESAV--ACT-SSRVITFDLRNQGMVL----GE----RGY--GRGLYVTSVDVNAEAYIVVE-NRELENQNR 362 (453)
Q Consensus 297 v~~v~~s~~~~~v--as~-d~tIrlWDl~t~~~~~----~~----~g~--~~~~~v~~~~~~g~~l~s~s-~dg~~~~~~ 362 (453)
...++|++++... ... .+...+|+........ .. ... .......+++++++.++.+. .++
T Consensus 179 p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~------ 252 (333)
T d1ri6a_ 179 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS------ 252 (333)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT------
T ss_pred ccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCC------
Confidence 4678888776433 232 3567888875432111 11 011 11223356788887665543 445
Q ss_pred ceEEEEEcCCCeeEEEE---EecCCCeeEEEEeeCCCeEEEEeC--CeEEEE--ECCCCeEE
Q 046773 363 RLAIVRRVDTFEEVCRF---SLRADRNVNVMGCMNQGYALMCVE--GVIRVW--EVEGGEYM 417 (453)
Q Consensus 363 ~~i~Iw~~~tg~~v~~l---~~~~~~v~~~~~~~~~~~lls~s~--~tIrlW--D~~tG~~l 417 (453)
++.+|+++.......+ .......+.++++|++++++++.. ++|+|| |.+||++-
T Consensus 253 -~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 253 -LITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp -EEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred -eEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence 8999988765333222 223344678899999999887653 899999 66888653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.30 E-value=3.7e-11 Score=117.24 Aligned_cols=244 Identities=11% Similarity=0.062 Sum_probs=137.1
Q ss_pred EeCCCcEEEEECCCCeEEEEecCCCCCcc--ccccceEEEEEEcCCeEEEEe-CCCCEEEEEeecCC--cceEEeeecce
Q 046773 160 GFADGAVRLFDLTTRLHVRTFRPQHSDRL--GQFSRAVSGIIITDSQLIFAT-LDGDIHVAVIDDVA--NETRTAHFGSV 234 (453)
Q Consensus 160 GS~D~TIrlWD~~tg~~~~tl~gh~~~~~--~~~s~~V~~i~f~g~~LasgS-~D~tIkvWd~~~~g--~~~~~~~~~~v 234 (453)
|+.|++|++||+.|++++..+..+....+ +.....+ +++.||+.|+.++ .++++.+||+.+ + ......+...
T Consensus 92 g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~-a~SpDGk~l~va~~~~~~v~~~d~~~-~~~~~~~~~~~~~- 168 (368)
T d1mdah_ 92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII-GNCASSACLLFFLFGSSAAAGLSVPG-ASDDQLTKSASCF- 168 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSE-EECTTSSCEEEEECSSSCEEEEEETT-TEEEEEEECSSCC-
T ss_pred cccCCeEEEEECCCCcEeeeecCCccceecccCCccce-EECCCCCEEEEEeCCCCeEEEEECCC-CcEeEEeeccCcc-
Confidence 35689999999999999988864432111 1001111 2455688887776 579999999987 4 1222221110
Q ss_pred ecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCC
Q 046773 235 MDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSS 314 (453)
Q Consensus 235 ~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~ 314 (453)
...|+++. .+++.+.|+++.+|+...+......... .....+...+..+.+.+++.++.+..+
T Consensus 169 -------~~~~~~~~--~~v~~~~Dg~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~ 231 (368)
T d1mdah_ 169 -------HIHPGAAA--THYLGSCPASLAASDLAAAPAAAGIVGA--------QCTGAQNCSSQAAQANYPGMLVWAVAS 231 (368)
T ss_dssp -------CCEEEETT--EEECCCCTTSCEEEECCSSCCCCEECCC--------CSCTTSCBCSCCEEETTTTEEEECBSS
T ss_pred -------eEccCCCc--eEEEEcCCCCEEEEEecCCceeeeeeec--------ccccccccceeecccccCcEEEEecCC
Confidence 11122221 1345566777777776654310000000 001112222334556666666666666
Q ss_pred cEEEEECCCCceEEEE--eecc----------CCeEEEEEEecCCEEEEEeCCCccc--cCcceEEEEEcCCCeeEEEEE
Q 046773 315 RVITFDLRNQGMVLGE--RGYG----------RGLYVTSVDVNAEAYIVVENRELEN--QNRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 315 tIrlWDl~t~~~~~~~--~g~~----------~~~~v~~~~~~g~~l~s~s~dg~~~--~~~~~i~Iw~~~tg~~v~~l~ 380 (453)
.+.+.|+..+...... .++. ......+++++++.+.....++... .....+.+||..+++.+.++.
T Consensus 232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~ 311 (368)
T d1mdah_ 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred CEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec
Confidence 6777776654332111 1100 0112356788888765543322111 112368889999998887765
Q ss_pred ecCCCeeEEEEeeCCCeE-EEE-eC-CeEEEEECCCCeEEEEecccC
Q 046773 381 LRADRNVNVMGCMNQGYA-LMC-VE-GVIRVWEVEGGEYMYSFRERI 424 (453)
Q Consensus 381 ~~~~~v~~~~~~~~~~~l-ls~-s~-~tIrlWD~~tG~~l~tL~gh~ 424 (453)
.. ..+..+.+++|++.+ .++ +. ++|+|||+++|+.+.+++...
T Consensus 312 ~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 312 NG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred CC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCC
Confidence 43 346778999999754 333 33 999999999999999997543
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=2.5e-12 Score=104.44 Aligned_cols=81 Identities=12% Similarity=0.192 Sum_probs=66.3
Q ss_pred CCcchHHHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhcc-CCchhHHHhhhhccC-----------------CCC
Q 046773 41 WPEPFVEALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVS-RSDLLWHRLTRRIWG-----------------RTN 102 (453)
Q Consensus 41 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~-~~~~~w~~~~~~~~~-----------------~~~ 102 (453)
++.||++.||.|++.+|++||+ +++|+.|+|||++|+.++ .++.+|+++|.+..- ..-
T Consensus 1 lk~D~~~~LP~Ell~~I~s~Ld----~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T d1nexb1 1 LKRDLITSLPFEISLKIFNYLQ----FEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKL 76 (100)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSC----HHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHCTTS
T ss_pred CCCCchhhCCHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCCHHHHHHHhcccccCCCc
Confidence 5789999999999999999987 789999999999999876 678899999865320 011
Q ss_pred cCcchhHHHHHHHhhhhhccccc
Q 046773 103 LLHATWRDEYIYRHRTAQNFRTR 125 (453)
Q Consensus 103 ~~~~~Wk~~y~~~~~~~~nw~~g 125 (453)
.....|+..|.++..+.+||-..
T Consensus 77 ~~~~~~r~~~~r~~~l~~nW~~p 99 (100)
T d1nexb1 77 SQQDRLRLSFLENIFILKNWYNP 99 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ChhhhHHHHHHHHHHHHhcCCCC
Confidence 23457889999999999999643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.11 E-value=1.4e-09 Score=109.39 Aligned_cols=99 Identities=6% Similarity=0.027 Sum_probs=69.1
Q ss_pred eCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEE--cCCeEEEEeC---------CCCEEEEEeecCC-cceEE
Q 046773 161 FADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIII--TDSQLIFATL---------DGDIHVAVIDDVA-NETRT 228 (453)
Q Consensus 161 S~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f--~g~~LasgS~---------D~tIkvWd~~~~g-~~~~~ 228 (453)
..|++|.+||+.|+++...+..+.-. .+...|.+++| ||+.|++++. ++.+.|||+++ + +.++.
T Consensus 33 ~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~-~~~~~l~ 108 (470)
T d2bgra1 33 KQENNILVFNAEYGNSSVFLENSTFD---EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-RQLITEE 108 (470)
T ss_dssp ESSSCEEEEETTTCCEEEEECTTTTT---TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEECCSS
T ss_pred EcCCcEEEEECCCCCEEEEEchhhhh---hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC-Ccccccc
Confidence 35789999999999998777654321 11123455544 6788998854 55678999987 4 44444
Q ss_pred eeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 229 AHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 229 ~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
.+...+. .+.|||||++ ||. ..|+.+.+|+..+++
T Consensus 109 ~~~~~~~----~~~~SPDG~~---ia~-~~~~~l~~~~~~~g~ 143 (470)
T d2bgra1 109 RIPNNTQ----WVTWSPVGHK---LAY-VWNNDIYVKIEPNLP 143 (470)
T ss_dssp CCCTTEE----EEEECSSTTC---EEE-EETTEEEEESSTTSC
T ss_pred cCCcccc----ccccccCcce---eeE-eecccceEEECCCCc
Confidence 4443332 4899999998 444 467899999999987
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.92 E-value=6e-09 Score=105.45 Aligned_cols=257 Identities=9% Similarity=0.057 Sum_probs=145.0
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEeCCCCEEEEEeecCCcceEEeeecceec
Q 046773 157 LACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMD 236 (453)
Q Consensus 157 LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~ 236 (453)
.+||+.+++|+|||+.+++.++++.- |. +++.. ..|..+.+.+|..... +...--.|..+.
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpV-----fs----------pd~~~-g~g~~~es~~vl~~~~-~~~~gd~hhP~~-- 74 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPV-----FN----------VDSAT-GWGITNESKEILGGDQ-QYLNGDCHHPHI-- 74 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECS-----SS----------BCTTT-CTTTSHHHHHHHCSSS-CCSCCCBCCCEE--
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEe-----Ec----------CCCCE-EEEECCccceEEeccc-ccccCcccCCCc--
Confidence 57999999999999999999988731 11 11111 1122222222211000 000000111111
Q ss_pred CceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCc--eEEEE-cC
Q 046773 237 DGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHE--SAVAC-TS 313 (453)
Q Consensus 237 ~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~--~~vas-~d 313 (453)
....++|||+++ .++...+.+|.++|++|.++-.- +. ..+......++|+|++ ..+++ ..
T Consensus 75 --s~t~gtpDGr~l--fV~d~~~~rVavIDl~t~k~~~i--i~-----------iP~g~gphgi~~spdg~t~YV~~~~~ 137 (441)
T d1qnia2 75 --SMTDGRYDGKYL--FINDKANTRVARIRLDIMKTDKI--TH-----------IPNVQAIHGLRLQKVPKTNYVFCNAE 137 (441)
T ss_dssp --EEETTEEEEEEE--EEEETTTTEEEEEETTTTEEEEE--EE-----------CTTCCCEEEEEECCSSBCCEEEEEEC
T ss_pred --ceecccCCCCEE--EEEcCCCCEEEEEECCCCcEeeE--Ee-----------cCCCCCccceEEeccCCEEEEEeccC
Confidence 124568999982 45667889999999999874210 00 0112335567887654 24443 23
Q ss_pred Cc------------------EEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccc---------------
Q 046773 314 SR------------------VITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELEN--------------- 359 (453)
Q Consensus 314 ~t------------------IrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~--------------- 359 (453)
.. +..+|.++.+...+. .+. ...-..++++|..+++.+.+...-
T Consensus 138 ~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~--~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~ 215 (441)
T d1qnia2 138 FVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG--NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV 215 (441)
T ss_dssp SCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE
T ss_pred CcccccCcccccccccccceEEeecCccceeeEEEecCC--CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE
Confidence 33 356899998766554 222 122367889999887776553110
Q ss_pred -------------------cCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEE-
Q 046773 360 -------------------QNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYM- 417 (453)
Q Consensus 360 -------------------~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l- 417 (453)
....++.|+.....+.+..+... .....+.++||++++++++. +||.|||+++-+.+
T Consensus 216 v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~ 294 (441)
T d1qnia2 216 VFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLF 294 (441)
T ss_dssp EEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHT
T ss_pred eCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHh
Confidence 00124445544444444444332 22456788999999887765 99999999753211
Q ss_pred -------EEecccC----CceEEEEecCCCEEEEE-eCCcEEEEecC
Q 046773 418 -------YSFRERI----GEEVIAFVGDDRHVAAS-CGTNIHLWDFG 452 (453)
Q Consensus 418 -------~tL~gh~----~~~V~a~s~d~~~lasg-~D~~IklWDl~ 452 (453)
.++.++. +..-.+|.++|..+.|. .|..|..|+++
T Consensus 295 ~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 295 EDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp TTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred hccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence 1111111 11113688888877888 99999999974
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.75 E-value=3.3e-08 Score=99.02 Aligned_cols=151 Identities=8% Similarity=-0.031 Sum_probs=105.3
Q ss_pred EEEcCCceEEEEcCCcEEEEECCCCceEEEEe-----eccCCeEEEEEEecCCEEEEEeCCCcc--ccCcceEEEEEcCC
Q 046773 300 VRVTSHESAVACTSSRVITFDLRNQGMVLGER-----GYGRGLYVTSVDVNAEAYIVVENRELE--NQNRRLAIVRRVDT 372 (453)
Q Consensus 300 v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~~-----g~~~~~~v~~~~~~g~~l~s~s~dg~~--~~~~~~i~Iw~~~t 372 (453)
++..+++.++...+++|.+||+.+++....+. .+...+.-..|+|||+.++.++..... ......+.|||+.+
T Consensus 22 ~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~ 101 (470)
T d2bgra1 22 LRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK 101 (470)
T ss_dssp CEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred CEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC
Confidence 45556676777778899999999997644332 223344556789999998887542100 00012778999998
Q ss_pred CeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEecccCC-c------------------eEEEEec
Q 046773 373 FEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFRERIG-E------------------EVIAFVG 433 (453)
Q Consensus 373 g~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~gh~~-~------------------~V~a~s~ 433 (453)
++ +..+..+++.+..+.++|||.+++...++.+.+|++.+|+..+....+.. . ....++|
T Consensus 102 ~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP 180 (470)
T d2bgra1 102 RQ-LITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP 180 (470)
T ss_dssp TE-ECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT
T ss_pred Cc-ccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC
Confidence 86 44567778889999999999999988789999999999987765432211 1 0124899
Q ss_pred CCCEEEEE-e-CCcEEEEec
Q 046773 434 DDRHVAAS-C-GTNIHLWDF 451 (453)
Q Consensus 434 d~~~lasg-~-D~~IklWDl 451 (453)
||++||.. . +..|+.|++
T Consensus 181 DGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 181 NGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp TSSEEEEEEEECTTCCEEEE
T ss_pred CCCccceeEecCCcCceEEE
Confidence 99999987 4 455776654
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=5.5e-09 Score=70.23 Aligned_cols=40 Identities=20% Similarity=0.493 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhhhhhHhHhhhhhHHhhcccchhccCCchhH
Q 046773 47 EALAAQVAIEASRSVGRLAAAAALANVFQVCSTWRAVSRSDLLW 90 (453)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~l~~~aqv~~~W~~l~~~~~~w 90 (453)
+.||.|+..+|++||+ .++|++++||||+|+.++.++.+|
T Consensus 2 ~~LP~eil~~If~~L~----~~dl~~~~~Vcr~w~~l~~~~~lW 41 (41)
T d1fs1a1 2 DSLPDELLLGIFSCLC----LPELLKVSGVCKRWYRLASDESLW 41 (41)
T ss_dssp CSSCHHHHHHHHTTSC----GGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred CcCCHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHhCCcccC
Confidence 4699999999999987 779999999999999999999998
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.39 E-value=4e-06 Score=84.32 Aligned_cols=199 Identities=8% Similarity=-0.001 Sum_probs=114.5
Q ss_pred EEEeeCCCeEEEeeCCCCcEEecccccCCcceeeee----------------eeeeeccceeEEEEcCCc--eEEEE-cC
Q 046773 253 LYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWR----------------MLTEFTEFVGRVRVTSHE--SAVAC-TS 313 (453)
Q Consensus 253 LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~----------------~l~~h~~~v~~v~~s~~~--~~vas-~d 313 (453)
++||+.+++|+|||+.+++.+.--....++...+|- ....|........++|++ ++++. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 568889999999999999844311111111101110 001122222222233444 45554 35
Q ss_pred CcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEE-EEEeC-CCcc----------ccCcceEEEEEcCCCeeEEEEE
Q 046773 314 SRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAY-IVVEN-RELE----------NQNRRLAIVRRVDTFEEVCRFS 380 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l-~s~s~-dg~~----------~~~~~~i~Iw~~~tg~~v~~l~ 380 (453)
++|.++|++++++.... ..++....-.+|+++|+.. +.... +... +.....+...|..+.+...++.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 78999999999775543 2233344446788888753 33322 2110 0111234567777776655554
Q ss_pred ecCCCeeEEEEeeCCCeEEEEe------------------------------------------CCeEEEEECCCCeEEE
Q 046773 381 LRADRNVNVMGCMNQGYALMCV------------------------------------------EGVIRVWEVEGGEYMY 418 (453)
Q Consensus 381 ~~~~~v~~~~~~~~~~~lls~s------------------------------------------~~tIrlWD~~tG~~l~ 418 (453)
... ....+.++++++++.+++ .+++.|++..+.+.++
T Consensus 174 v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~ 252 (441)
T d1qnia2 174 VDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR 252 (441)
T ss_dssp ESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred cCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence 432 355677777777766443 1456777777777777
Q ss_pred EecccCCceEEEEecCCCEE-EEE-eCCcEEEEecC
Q 046773 419 SFRERIGEEVIAFVGDDRHV-AAS-CGTNIHLWDFG 452 (453)
Q Consensus 419 tL~gh~~~~V~a~s~d~~~l-asg-~D~~IklWDl~ 452 (453)
+++.+....=-.++|||++| +++ .|++|.|||+.
T Consensus 253 ~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 253 YIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp EECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred EEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence 77655433012789999987 556 89999999974
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.98 E-value=0.0039 Score=59.72 Aligned_cols=243 Identities=12% Similarity=-0.003 Sum_probs=119.9
Q ss_pred EEEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEEee-CCCeEEEeeCCC-Cc
Q 046773 197 GIIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGL-AGRAFHIWDRQA-EE 271 (453)
Q Consensus 197 ~i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS-~D~tIrvWD~~t-g~ 271 (453)
.++|+ ++.|..++ .+.+..+.++..+ +.....+... .....++++++++... |++.. ...+|..+.+.. +.
T Consensus 44 ~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~--~~p~~v~~~~~~~~~~-v~~a~~~~~~v~~~~~~~~~~ 119 (365)
T d1jofa_ 44 WMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIG--GHPRANDADTNTRAIF-LLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp EEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECC--SSGGGGCTTSCCEEEE-EEECSSTTCCEEEEEESSSCC
T ss_pred EEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCC--CCcEEEEECCCCCEEE-EEEecCCCCEEEEeEccCCCC
Confidence 36665 55666554 4567777776533 2222222111 1122368899988532 33322 345555554322 11
Q ss_pred ---EEecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc-CCcEEEEECCCCceEEEE-----eeccCCeEEE
Q 046773 272 ---VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT-SSRVITFDLRNQGMVLGE-----RGYGRGLYVT 340 (453)
Q Consensus 272 ---~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~-d~tIrlWDl~t~~~~~~~-----~g~~~~~~v~ 340 (453)
.+.-......+.. .....+.....+.++.|+|++. ++++. .+.|.+++....+.+... ...+.+-.=.
T Consensus 120 ~~~~~~~~~~~~~~~~-~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i 198 (365)
T d1jofa_ 120 YGNVFSVSETGKLEKN-VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV 198 (365)
T ss_dssp EEEEEEECTTCCEEEE-EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred cceeEeeeecceecCc-ccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEE
Confidence 1110000000000 0000111123467899999885 33332 357888876554332211 1112222335
Q ss_pred EEEecCCEEEEE-eCCCccccCcceEEEEEcCCCee--E---EEEEecC--------------CCeeEEEEeeCCCeEEE
Q 046773 341 SVDVNAEAYIVV-ENRELENQNRRLAIVRRVDTFEE--V---CRFSLRA--------------DRNVNVMGCMNQGYALM 400 (453)
Q Consensus 341 ~~~~~g~~l~s~-s~dg~~~~~~~~i~Iw~~~tg~~--v---~~l~~~~--------------~~v~~~~~~~~~~~lls 400 (453)
.|+++++.+.+. ..++ ++.+++.+.+.. + ..+..-+ .....+.++|+++++.+
T Consensus 199 ~f~pdg~~~yv~~e~~~-------~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv 271 (365)
T d1jofa_ 199 AMHPTGNYLYALMEAGN-------RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp EECTTSSEEEEEETTTT-------EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred EECCCCceEEEeccCCC-------EEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence 677888766444 3445 899999876532 2 2221111 11235678899999876
Q ss_pred EeC-------CeEEEEECCC-CeEEEEec-----ccCCceE--EEEec-CCCEEEEE--eCCcEEEEecC
Q 046773 401 CVE-------GVIRVWEVEG-GEYMYSFR-----ERIGEEV--IAFVG-DDRHVAAS--CGTNIHLWDFG 452 (453)
Q Consensus 401 ~s~-------~tIrlWD~~t-G~~l~tL~-----gh~~~~V--~a~s~-d~~~lasg--~D~~IklWDl~ 452 (453)
+.. ..|-.+++.. |.....+. ..-.. - .+|+| ||++|+.+ .+++|.||++.
T Consensus 272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~-p~~i~~~p~~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH-SNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT-CCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred EcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCC-ccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence 531 3477777654 32221111 01111 2 25777 88987555 78999999863
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=0.0037 Score=55.76 Aligned_cols=190 Identities=11% Similarity=0.042 Sum_probs=95.9
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEE--Ec-CCc-
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVA--CT-SSR- 315 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~va--s~-d~t- 315 (453)
.-+|||||++++.+........+.+-+..++... .+..+........++|++..++ +. .+.
T Consensus 43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~ 107 (269)
T d2hqsa1 43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------------QVASFPRHNGAPAFSPDGSKLAFALSKTGSL 107 (269)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------------EEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eeEECCCCCEEEEEEeeccCcceeeeecccCcee---------------EEeeeecccccceecCCCCeeeEeeecCCcc
Confidence 3689999998543222122234555566665521 1233445566677888775333 32 222
Q ss_pred -EEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeC-CCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEee
Q 046773 316 -VITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVEN-RELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCM 393 (453)
Q Consensus 316 -IrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~-dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~ 393 (453)
+..+............ .........+.++++.+...+. ++ ...+.+.+.+++... .+...........+++
T Consensus 108 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~sp 180 (269)
T d2hqsa1 108 NLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAG-----RPQVYKVNINGGAPQ-RITWEGSQNQDADVSS 180 (269)
T ss_dssp EEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTS-----SCEEEEEETTSSCCE-ECCCSSSEEEEEEECT
T ss_pred ceeecccccccceeeee-ccccccccccccccccceecccccC-----CceEeeeecccccce-eeeccccccccccccc
Confidence 3333333332222211 1222233455666666555443 34 113444455555332 2222222234556788
Q ss_pred CCCeEEEEeC--C--eEEEEECCCCeEEEEecccCCceEEEEecCCCEEEEE--e--CCcEEEEecC
Q 046773 394 NQGYALMCVE--G--VIRVWEVEGGEYMYSFRERIGEEVIAFVGDDRHVAAS--C--GTNIHLWDFG 452 (453)
Q Consensus 394 ~~~~lls~s~--~--tIrlWD~~tG~~l~tL~gh~~~~V~a~s~d~~~lasg--~--D~~IklWDl~ 452 (453)
++..++..+. + .|.+.|..++.+..+....... --.|+|||++|+-. . ...|.++++.
T Consensus 181 dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~p~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 181 DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDE-TPSLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCE-EEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ccceeEEEeecCCceeeeEeecccccceEeecCcccc-ceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 8888876554 3 5555576666553332222211 22799999998733 2 3457777764
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.94 E-value=0.0046 Score=57.22 Aligned_cols=215 Identities=10% Similarity=0.023 Sum_probs=118.0
Q ss_pred EEEEEE--cCCeEEEEeCCCCEEEEEeecCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-
Q 046773 195 VSGIII--TDSQLIFATLDGDIHVAVIDDVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE- 271 (453)
Q Consensus 195 V~~i~f--~g~~LasgS~D~tIkvWd~~~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~- 271 (453)
+.++++ ||+.+++...+++|..++-+. ....+....+.+ ..++|+|||+. +++...++.+.+|+..+..
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~~~~~~~~~~----~gla~~~dG~l---~v~~~~~~~~~~~~~~~~~~ 101 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKV----SGLAFTSNGDL---VATGWNADSIPVVSLVKSDG 101 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEE----EEEEECTTSCE---EEEEECTTSCEEEEEECTTS
T ss_pred cCCEEECCCCCEEEEeCCCCEEEEEeCCC-CEEEEEcCCCCc----ceEEEcCCCCe---EEEecCCceEEEEEeccccc
Confidence 455665 577888888888776665433 123333222222 24899999995 5566777888888776543
Q ss_pred -EEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc--CCcEEEEECCCCceEEEE-ee-------ccCCeEEE
Q 046773 272 -VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT--SSRVITFDLRNQGMVLGE-RG-------YGRGLYVT 340 (453)
Q Consensus 272 -~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~--d~tIrlWDl~t~~~~~~~-~g-------~~~~~~v~ 340 (453)
... +..+ ......+.+.+++++.+..+. ++.|..+|+.++...... .. +.......
T Consensus 102 ~~~~------------~~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 168 (302)
T d2p4oa1 102 TVET------------LLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 168 (302)
T ss_dssp CEEE------------EEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred ceee------------cccc-CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccc
Confidence 110 0000 112456788888888766654 357888888876432211 11 11122345
Q ss_pred EEEecCCEEEEEe-CCCccccCcceEEEEEcCCCee---EEEEEecCCCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCe
Q 046773 341 SVDVNAEAYIVVE-NRELENQNRRLAIVRRVDTFEE---VCRFSLRADRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGE 415 (453)
Q Consensus 341 ~~~~~g~~l~s~s-~dg~~~~~~~~i~Iw~~~tg~~---v~~l~~~~~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~ 415 (453)
.++++++.+..+. ..+ .+...+.+.... ...+. .......+++.+++...++... +.|..++.....
T Consensus 169 gi~~~~~~l~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~ 240 (302)
T d2p4oa1 169 GLKRFGNFLYVSNTEKM-------LLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST 240 (302)
T ss_dssp EEEEETTEEEEEETTTT-------EEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE
T ss_pred cccccCCceeeecCCCC-------eEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE
Confidence 6677777665543 333 444444443211 11111 1223456788888876555554 888888876432
Q ss_pred -EEEEecccCCceEE--EE---ecCCCEEE
Q 046773 416 -YMYSFRERIGEEVI--AF---VGDDRHVA 439 (453)
Q Consensus 416 -~l~tL~gh~~~~V~--a~---s~d~~~la 439 (453)
.+.++...... .. +| .+|++.|.
T Consensus 241 ~~~~~~~~~~~~-pt~vafg~~~~D~~~Ly 269 (302)
T d2p4oa1 241 TIIAQAEQGVIG-STAVAFGQTEGDCTAIY 269 (302)
T ss_dssp EEEECGGGTCTT-EEEEEECCSTTTTTEEE
T ss_pred EEEEecCCCCCC-ceEEEEcCCCCCCCEEE
Confidence 23333323233 33 67 46888763
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.91 E-value=0.0031 Score=58.44 Aligned_cols=225 Identities=10% Similarity=-0.045 Sum_probs=124.5
Q ss_pred EEEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEeec
Q 046773 146 TCRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVIDD 221 (453)
Q Consensus 146 ~v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~~ 221 (453)
++..+++++ ++++|...+++|..||...... .+.... ..+.+++|+ |+.+++...++.+.+++...
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~~~~~--------~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~ 98 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IHATVE--------GKVSGLAFTSNGDLVATGWNADSIPVVSLVK 98 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EEEECS--------SEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--EEEcCC--------CCcceEEEcCCCCeEEEecCCceEEEEEecc
Confidence 367788865 7999999999999999764432 332111 146677775 67778777788888777665
Q ss_pred C-C-cceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc--EEecccccCCcceeeeeeeeeeccce
Q 046773 222 V-A-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE--VFVGGDLTDHNTVMGWRMLTEFTEFV 297 (453)
Q Consensus 222 ~-g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~--~~~g~~l~~~~~v~~w~~l~~h~~~v 297 (453)
. + ...+....... ...-++++++|++ +++-+.++.|..+|..++. .......... ..........
T Consensus 99 ~~~~~~~~~~~~~~~--~~n~i~~~~~g~~---~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 167 (302)
T d2p4oa1 99 SDGTVETLLTLPDAI--FLNGITPLSDTQY---LTADSYRGAIWLIDVVQPSGSIWLEHPMLAR------SNSESVFPAA 167 (302)
T ss_dssp TTSCEEEEEECTTCS--CEEEEEESSSSEE---EEEETTTTEEEEEETTTTEEEEEEECGGGSC------SSTTCCSCSE
T ss_pred cccceeeccccCCcc--ccceeEEccCCCE---EeeccccccceeeeccCCcceeEecCCccce------eeccCccccc
Confidence 2 2 11111111110 1123789999986 5566778888888988876 2111000000 0001112345
Q ss_pred eEEEEcCCceEEEEc-CCcEEEEECCCCceEEE---E-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCC
Q 046773 298 GRVRVTSHESAVACT-SSRVITFDLRNQGMVLG---E-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDT 372 (453)
Q Consensus 298 ~~v~~s~~~~~vas~-d~tIrlWDl~t~~~~~~---~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~t 372 (453)
+.+.++++.++++.. .+.|..+|+........ . .+.. ..-.+++.+|+.+++...++ .|..++.+
T Consensus 168 ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--pdgia~d~dG~l~va~~~~~-------~V~~i~p~- 237 (302)
T d2p4oa1 168 NGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN--IDDFAFDVEGNLYGATHIYN-------SVVRIAPD- 237 (302)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCC--CSSEEEBTTCCEEEECBTTC-------CEEEECTT-
T ss_pred ccccccCCceeeecCCCCeEEeccccccccccccccccCCCC--CcceEECCCCCEEEEEcCCC-------cEEEECCC-
Confidence 667777777766654 46788888765432211 1 1111 11257788888776655566 55555443
Q ss_pred CeeEEEEEec--CCCeeEEEE---eeCCCeEEEE
Q 046773 373 FEEVCRFSLR--ADRNVNVMG---CMNQGYALMC 401 (453)
Q Consensus 373 g~~v~~l~~~--~~~v~~~~~---~~~~~~lls~ 401 (453)
++........ -.....++| .+|++.|..+
T Consensus 238 G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt 271 (302)
T d2p4oa1 238 RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 271 (302)
T ss_dssp CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence 3322222222 123556777 3455665444
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=0.0063 Score=54.14 Aligned_cols=230 Identities=10% Similarity=0.013 Sum_probs=112.9
Q ss_pred cEEEEECCCCeEEEEecCCCCCccccccceEEE--EEEcCCeEEEEeCCCC-EEEE--EeecCCcceEEeeecceecCce
Q 046773 165 AVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSG--IIITDSQLIFATLDGD-IHVA--VIDDVANETRTAHFGSVMDDGV 239 (453)
Q Consensus 165 TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~--i~f~g~~LasgS~D~t-IkvW--d~~~~g~~~~~~~~~~v~~~~~ 239 (453)
.|.|=|...+...+.+.+ .. .+.. .++||++||+.+.... ..+| +.++.....+..+.+.. .
T Consensus 20 ~l~i~d~dG~~~~~l~~~-~~--------~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 86 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRS-PQ--------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN----G 86 (269)
T ss_dssp EEEEEETTSCSCEEEEEE-SS--------CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCE----E
T ss_pred EEEEEcCCCCCcEEEecC-CC--------ceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeeccc----c
Confidence 566777764444433333 22 2333 4457899998776543 2333 33331122233232221 2
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEee--CCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcC--CceEEEEc-CC
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWD--RQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTS--HESAVACT-SS 314 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD--~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~--~~~~vas~-d~ 314 (453)
...|+|||+.+. +....++...++. ......... ...........+++ ......+. ++
T Consensus 87 ~~~~spdg~~i~--~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~g 149 (269)
T d2hqsa1 87 APAFSPDGSKLA--FALSKTGSLNLYVMDLASGQIRQV---------------TDGRSNNTEPTWFPDSQNLAFTSDQAG 149 (269)
T ss_dssp EEEECTTSSEEE--EEECTTSSCEEEEEETTTCCEEEC---------------CCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred cceecCCCCeee--EeeecCCccceeecccccccceee---------------eeccccccccccccccccceecccccC
Confidence 368999999743 2222232223332 222222110 00111111122332 22333333 33
Q ss_pred --cEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEe
Q 046773 315 --RVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGC 392 (453)
Q Consensus 315 --tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~ 392 (453)
.|.+.++.++..... ........-..+++++..++..+.++ . ...||..+.......+...........++
T Consensus 150 ~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~~~~~~~~~----~--~~~i~~~~~~~~~~~~~~~~~~~~~p~~S 222 (269)
T d2hqsa1 150 RPQVYKVNINGGAPQRI-TWEGSQNQDADVSSDGKFMVMVSSNG----G--QQHIAKQDLATGGVQVLSSTFLDETPSLA 222 (269)
T ss_dssp SCEEEEEETTSSCCEEC-CCSSSEEEEEEECTTSSEEEEEEECS----S--CEEEEEEETTTCCEEECCCSSSCEEEEEC
T ss_pred CceEeeeecccccceee-ecccccccccccccccceeEEEeecC----C--ceeeeEeecccccceEeecCccccceEEC
Confidence 467778777643221 22222223356788888887766544 1 34455444322222333344446677899
Q ss_pred eCCCeEEEEeC----CeEEEEECCCCeEEEEecccCCceEE--EEec
Q 046773 393 MNQGYALMCVE----GVIRVWEVEGGEYMYSFRERIGEEVI--AFVG 433 (453)
Q Consensus 393 ~~~~~lls~s~----~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~ 433 (453)
|||++++-.+. ..|.++|+.+++. ..|....+. +. +++|
T Consensus 223 PDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~-~~~p~WSP 267 (269)
T d2hqsa1 223 PNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQ-VKFPAWSP 267 (269)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSE-EEEEEECC
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCc-EEeEEeCC
Confidence 99999885443 6899999987665 445555454 54 4454
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.73 E-value=0.0084 Score=54.75 Aligned_cols=146 Identities=13% Similarity=0.085 Sum_probs=88.6
Q ss_pred ceeEEEEcCCceEEEEc-C-CcEEEEECCCCceEEEEe--eccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC
Q 046773 296 FVGRVRVTSHESAVACT-S-SRVITFDLRNQGMVLGER--GYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD 371 (453)
Q Consensus 296 ~v~~v~~s~~~~~vas~-d-~tIrlWDl~t~~~~~~~~--g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~ 371 (453)
....+++++++.+...+ . ..+.+.|.. ++.+.+.. .+.....-.+++.+++.+++....+ .|++++.+
T Consensus 115 ~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~-------~V~~~d~~ 186 (279)
T d1q7fa_ 115 HPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH-------CVKVFNYE 186 (279)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT-------EEEEEETT
T ss_pred ccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccc-------ceeeeecC
Confidence 34567787766544433 3 457777754 34444431 1222223345666676666655555 78888764
Q ss_pred CCeeEEEEEe--cCCCeeEEEEeeCCCeEEEEeC--CeEEEEECCCCeEEEEecccC--CceEE--EEecCCCEEEEEeC
Q 046773 372 TFEEVCRFSL--RADRNVNVMGCMNQGYALMCVE--GVIRVWEVEGGEYMYSFRERI--GEEVI--AFVGDDRHVAASCG 443 (453)
Q Consensus 372 tg~~v~~l~~--~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~~tG~~l~tL~gh~--~~~V~--a~s~d~~~lasg~D 443 (453)
|+.+.++.. ..+....+++.+++..+++-.. ..|.++|. +|+.+.++.... .. .+ ++.|||+.+++..+
T Consensus 187 -G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~-p~~vav~~dG~l~V~~~n 263 (279)
T d1q7fa_ 187 -GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ-CFDVALMDDGSVVLASKD 263 (279)
T ss_dssp -CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC-EEEEEEETTTEEEEEETT
T ss_pred -CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCC-EeEEEEeCCCcEEEEeCC
Confidence 566666532 1223456777777775554333 57999984 699888875432 22 33 67899987665578
Q ss_pred CcEEEEecC
Q 046773 444 TNIHLWDFG 452 (453)
Q Consensus 444 ~~IklWDl~ 452 (453)
+.|++|.+.
T Consensus 264 ~~v~~fr~~ 272 (279)
T d1q7fa_ 264 YRLYIYRYV 272 (279)
T ss_dssp TEEEEEECS
T ss_pred CeEEEEEee
Confidence 899999875
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.66 E-value=0.0081 Score=53.36 Aligned_cols=233 Identities=12% Similarity=0.059 Sum_probs=108.8
Q ss_pred EEEc--CCeEEEEeCCCCEEEEEeecCC-cceEEeeecceecCceEEEEeCCCceeeEEEE-eeCCC--eEEEeeCCCCc
Q 046773 198 IIIT--DSQLIFATLDGDIHVAVIDDVA-NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYA-GLAGR--AFHIWDRQAEE 271 (453)
Q Consensus 198 i~f~--g~~LasgS~D~tIkvWd~~~~g-~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaS-gS~D~--tIrvWD~~tg~ 271 (453)
+++| |+++|+.+.+ .|.+.|+.+ | ...++.+.+.. ....|||||++++.+.. .+.+. .|-+.+..+++
T Consensus 6 ~sPdi~G~~v~f~~~~-dl~~~d~~~-g~~~~Lt~~~~~~----~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 6 LNPDIHGDRIIFVCCD-DLWEHDLKS-GSTRKIVSNLGVI----NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp EEEEEETTEEEEEETT-EEEEEETTT-CCEEEEECSSSEE----EEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred cCCCCCCCEEEEEeCC-cEEEEECCC-CCEEEEecCCCcc----cCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence 5677 9999987655 344445555 4 33343332222 13689999998542211 12222 36666787777
Q ss_pred EEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc-C-------CcEEEEECCCCceEEEEeeccCCeEEEEEE
Q 046773 272 VFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT-S-------SRVITFDLRNQGMVLGERGYGRGLYVTSVD 343 (453)
Q Consensus 272 ~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~-d-------~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~ 343 (453)
... ++.... .............++|++..++.. . ..+.+.+...+.......+. ....+.
T Consensus 80 ~~~---lt~~~~-----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 147 (281)
T d1k32a2 80 IKR---ITYFSG-----KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP----ATHILF 147 (281)
T ss_dssp EEE---CCCCCE-----EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS----CSEEEE
T ss_pred eEE---eeecCC-----CccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCc----cceeee
Confidence 321 111000 001111234456788887555431 1 13556666654321111111 113344
Q ss_pred ecCCEEEEEeCCCccccC-----cceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC----CeEEEEECCCC
Q 046773 344 VNAEAYIVVENRELENQN-----RRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE----GVIRVWEVEGG 414 (453)
Q Consensus 344 ~~g~~l~s~s~dg~~~~~-----~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~----~tIrlWD~~tG 414 (453)
+++..++........... .....+......... ..............+ +..++.... ..|.+.|+.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~g~ 224 (281)
T d1k32a2 148 ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIV--GHRIYFITDIDGFGQIYSTDLDGK 224 (281)
T ss_dssp ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEE--TTEEEEEECTTSSCEEEEEETTSC
T ss_pred cCCCeEEEeeccccceeeeeccCCcceeeeecccccee-eccCCccccceeeee--ccccceecccccccceEEEeCCCC
Confidence 555444333222100000 001111222222211 111111112222222 334444433 57888898876
Q ss_pred eEEEEecccCCceEEEEecCCCEEEEEeCCcEEEEecC
Q 046773 415 EYMYSFRERIGEEVIAFVGDDRHVAASCGTNIHLWDFG 452 (453)
Q Consensus 415 ~~l~tL~gh~~~~V~a~s~d~~~lasg~D~~IklWDl~ 452 (453)
+. ..|..+.+..+..++|||+.|+-..++.|.++|+.
T Consensus 225 ~~-~~lt~~~~~~~~~~SpDG~~I~f~~~~~l~~~d~~ 261 (281)
T d1k32a2 225 DL-RKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPD 261 (281)
T ss_dssp SC-EECCCCCSSCEEEEEESSSCEEEEETTEEEEECTT
T ss_pred ce-EEeecCCCcccccCcCCCCEEEEEeCCEEEEEECC
Confidence 54 33443333336789999999886677888888874
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.50 E-value=0.033 Score=50.49 Aligned_cols=237 Identities=9% Similarity=0.042 Sum_probs=124.1
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc---CCeEEEE-eCCCCEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT---DSQLIFA-TLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~---g~~Lasg-S~D~tIkvWd~~ 220 (453)
...+++++ +++++-...+.|++||.+ |++++.+..... .-+. ...-.++++. +..++.. +....|.+++..
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~-~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK-RDSQ-LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS-STTC-BSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCC-Cccc-ccccccccccccccccceeccCCcccccccccc
Confidence 45677764 688888888999999975 888888742111 0000 0012234432 2233332 233445554432
Q ss_pred cCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEE
Q 046773 221 DVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRV 300 (453)
Q Consensus 221 ~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v 300 (453)
|.......... ......++++++|+. +++.+..+.+.+.|........-. ...+......+
T Consensus 102 --g~~~~~~~~~~-~~~p~~~avd~~G~i---~v~~~~~~~~~~~~~~g~~~~~~g-------------~~~~~~~~~~i 162 (279)
T d1q7fa_ 102 --GQFVRKFGATI-LQHPRGVTVDNKGRI---IVVECKVMRVIIFDQNGNVLHKFG-------------CSKHLEFPNGV 162 (279)
T ss_dssp --SCEEEEECTTT-CSCEEEEEECTTSCE---EEEETTTTEEEEECTTSCEEEEEE-------------CTTTCSSEEEE
T ss_pred --ccceeecCCCc-ccccceeccccCCcE---EEEeeccceeeEeccCCceeeccc-------------cccccccccee
Confidence 21111111111 111224778888875 334344456667665432211100 01223445667
Q ss_pred EEcCCceE-EEEcC-CcEEEEECCCCceEEEE--eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeE
Q 046773 301 RVTSHESA-VACTS-SRVITFDLRNQGMVLGE--RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEV 376 (453)
Q Consensus 301 ~~s~~~~~-vas~d-~tIrlWDl~t~~~~~~~--~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v 376 (453)
++++++.+ ++... ..|+++|.. ++.+.+. .++...-.-.+++++|+.+++-+.+. ..|.+++ .+|+.+
T Consensus 163 ~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~------~~v~~f~-~~G~~~ 234 (279)
T d1q7fa_ 163 VVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN------FNLTIFT-QDGQLI 234 (279)
T ss_dssp EECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS------CEEEEEC-TTSCEE
T ss_pred eeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCC------cEEEEEC-CCCCEE
Confidence 88877644 44433 689999976 4544443 12222222346778888666533322 1577776 357777
Q ss_pred EEEEecC--CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCC
Q 046773 377 CRFSLRA--DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGG 414 (453)
Q Consensus 377 ~~l~~~~--~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG 414 (453)
.++.... .....++..+++. ++.+.. +.|++|...+.
T Consensus 235 ~~~~~~~~~~~p~~vav~~dG~-l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 235 SALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECSCC
T ss_pred EEEeCCCCCCCEeEEEEeCCCc-EEEEeCCCeEEEEEeeee
Confidence 7765432 2245667777754 554445 89999987654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=0.022 Score=51.14 Aligned_cols=183 Identities=7% Similarity=0.037 Sum_probs=97.9
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEc--CCcEE
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACT--SSRVI 317 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~--d~tIr 317 (453)
.|+|+++|+. .++....+.|++++-.+++.... ..+ ......|++++++.+..++ ...+.
T Consensus 61 gvav~~~g~i---~v~d~~~~~i~~~~~~~~~~~~~--------------~~~-~~~p~~iavd~~g~i~v~d~~~~~~~ 122 (260)
T d1rwia_ 61 GLAVDGAGTV---YVTDFNNRVVTLAAGSNNQTVLP--------------FDG-LNYPEGLAVDTQGAVYVADRGNNRVV 122 (260)
T ss_dssp CEEECTTCCE---EEEETTTEEEEECTTCSCCEECC--------------CCS-CCSEEEEEECTTCCEEEEEGGGTEEE
T ss_pred EEEEcCCCCE---EEeeeeeceeeeeeeccceeeee--------------eee-eeecccccccccceeEeecccccccc
Confidence 3789999985 44666677788877655553210 111 1345678888776444332 24566
Q ss_pred EEECCCCceEEEE-eeccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEE-ecCCCeeEEEEeeCC
Q 046773 318 TFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFS-LRADRNVNVMGCMNQ 395 (453)
Q Consensus 318 lWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~-~~~~~v~~~~~~~~~ 395 (453)
..+.......... .+-. ...-.+++++++.+++..... .+..++.+.... ..+. ........+++.+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~-~p~~i~~~~~g~~~v~~~~~~-------~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g 193 (260)
T d1rwia_ 123 KLAAGSKTQTVLPFTGLN-DPDGVAVDNSGNVYVTDTDNN-------RVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAG 193 (260)
T ss_dssp EECTTCSSCEECCCCSCC-SCCEEEECTTCCEEEEEGGGT-------EEEEECTTTCCE-EECCCSSCCSEEEEEECTTC
T ss_pred ccccccceeeeeeecccC-CcceeeecCCCCEeeeccccc-------ccccccccccee-eeeeccccCCCccceeeeee
Confidence 7776554322211 1111 111245667777666655555 566666554322 2221 112234566777776
Q ss_pred CeEEEEeC-CeEEEEECCCCeEEEEecccCCceE-EEEecCCCEEEEE-eCCcEEEE
Q 046773 396 GYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEV-IAFVGDDRHVAAS-CGTNIHLW 449 (453)
Q Consensus 396 ~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V-~a~s~d~~~lasg-~D~~IklW 449 (453)
...++... +.|...+...+.........-..+. .++.++|.+.++- .++.|+..
T Consensus 194 ~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 194 TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 250 (260)
T ss_dssp CEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred eeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence 65555555 7787777765433221122222212 2677888887776 66666543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.42 E-value=0.05 Score=50.57 Aligned_cols=190 Identities=5% Similarity=-0.026 Sum_probs=99.1
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeec-cceeEEEEcCCceEEEEc-CC---
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFT-EFVGRVRVTSHESAVACT-SS--- 314 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~-~~v~~v~~s~~~~~vas~-d~--- 314 (453)
-++|+++|.. |+.+...+.|...|..++....-.... .+.. ...+.+.|++++.+-.++ ..
T Consensus 75 Gl~~~~dg~~---l~vad~~~~i~~~~~~g~~~~~~~~~~-----------~g~~~~~pndl~~d~~G~lyvtd~~~~~~ 140 (314)
T d1pjxa_ 75 GCQCDRDANQ---LFVADMRLGLLVVQTDGTFEEIAKKDS-----------EGRRMQGCNDCAFDYEGNLWITAPAGEVA 140 (314)
T ss_dssp EEEECSSSSE---EEEEETTTEEEEEETTSCEEECCSBCT-----------TSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred eEEEeCCCCE---EEEEECCCeEEEEeCCCcEEEEEeccc-----------cccccCCCcEEEECCCCCEEEecCccCcc
Confidence 4899999875 455666677888898776522100000 0110 124667888776443322 11
Q ss_pred -----------cEEEEECCC-CceEEEEeeccCCeEEEEEEecCC----EE-EEEeCCCccccCcceEEEEEcCCCeeEE
Q 046773 315 -----------RVITFDLRN-QGMVLGERGYGRGLYVTSVDVNAE----AY-IVVENRELENQNRRLAIVRRVDTFEEVC 377 (453)
Q Consensus 315 -----------tIrlWDl~t-~~~~~~~~g~~~~~~v~~~~~~g~----~l-~s~s~dg~~~~~~~~i~Iw~~~tg~~v~ 377 (453)
.-+||-+.. ++......+-. .-.=.+++++++ .+ ++-+..+ .|..++++....+.
T Consensus 141 ~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~-~pNGi~~~~d~d~~~~~lyv~d~~~~-------~i~~~d~~~~g~~~ 212 (314)
T d1pjxa_ 141 PADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQ-FPNGIAVRHMNDGRPYQLIVAETPTK-------KLWSYDIKGPAKIE 212 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTTSCEEEEEEEES-SEEEEEEEECTTSCEEEEEEEETTTT-------EEEEEEEEETTEEE
T ss_pred cccccceeccCCceEEEEeecCceeEeeCCcc-eeeeeEECCCCCcceeEEEEEeeccc-------ceEEeeccCccccc
Confidence 123443332 22221111111 111135666654 23 3333444 44444444221121
Q ss_pred E---E-EecC---CCeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEecCCCEE-EEE-eCCc
Q 046773 378 R---F-SLRA---DRNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFVGDDRHV-AAS-CGTN 445 (453)
Q Consensus 378 ~---l-~~~~---~~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s~d~~~l-asg-~D~~ 445 (453)
. + .+.. .....+++..++...++... +.|.++|.++|+.+.++..+... .. +|.||++.| ++. ..++
T Consensus 213 ~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~-~t~~afg~d~~~lyVt~~~~g~ 291 (314)
T d1pjxa_ 213 NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEK-PSNLHFKPQTKTIFVTEHENNA 291 (314)
T ss_dssp EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSC-EEEEEECTTSSEEEEEETTTTE
T ss_pred eeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCC-EEEEEEeCCCCEEEEEECCCCc
Confidence 1 1 1111 11335666677776666655 89999999999877777655444 43 788999865 566 6777
Q ss_pred EEEEecC
Q 046773 446 IHLWDFG 452 (453)
Q Consensus 446 IklWDl~ 452 (453)
|.-.|+.
T Consensus 292 i~~~~~~ 298 (314)
T d1pjxa_ 292 VWKFEWQ 298 (314)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 7766654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.00 E-value=0.033 Score=52.88 Aligned_cols=160 Identities=10% Similarity=0.117 Sum_probs=86.0
Q ss_pred EEEEeCCCceeeEEEEe-eCCCeEEEeeCCC-CcE-EecccccCCcceeeeeeeeeeccceeEEEEcCCce--EEEEc-C
Q 046773 240 LIDFTGCSRYWVGLYAG-LAGRAFHIWDRQA-EEV-FVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHES--AVACT-S 313 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSg-S~D~tIrvWD~~t-g~~-~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~--~vas~-d 313 (453)
.+.|+|||++ |++. .....|.++++.. +.. ..+.. . ......-...+.|+|++. .++.. +
T Consensus 149 ~v~~sPdG~~---l~v~d~g~d~v~~~~~~~~g~~~~~~~~----------~-~~~~g~gPr~i~f~pdg~~~yv~~e~~ 214 (365)
T d1jofa_ 149 GMVFDPTETY---LYSADLTANKLWTHRKLASGEVELVGSV----------D-APDPGDHPRWVAMHPTGNYLYALMEAG 214 (365)
T ss_dssp EEEECTTSSE---EEEEETTTTEEEEEEECTTSCEEEEEEE----------E-CSSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred EEEECCCCCE---EEEeeCCCCEEEEEEccCCCceeeccce----------e-ecCCCCceEEEEECCCCceEEEeccCC
Confidence 5899999997 3444 3445788887654 332 11100 0 001112346689998874 34443 5
Q ss_pred CcEEEEECCCCceEEE-Eee------------------ccCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcCCCe
Q 046773 314 SRVITFDLRNQGMVLG-ERG------------------YGRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVDTFE 374 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~-~~g------------------~~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~ 374 (453)
++|.+||+.+++.... ... +........++|+|+.++++.... ++.....|.++..+...
T Consensus 215 ~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~-~~~~~~~i~~~~~~~~g 293 (365)
T d1jofa_ 215 NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN-KFELQGYIAGFKLRDCG 293 (365)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES-STTSCCEEEEEEECTTS
T ss_pred CEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC-CCccceEEEEEEecCCC
Confidence 7899999977542211 100 000122356789998876654321 11111235555554321
Q ss_pred eEEE-EE-----ecCCCeeEEEEee-CCCeEEEEeC--CeEEEEECCCC
Q 046773 375 EVCR-FS-----LRADRNVNVMGCM-NQGYALMCVE--GVIRVWEVEGG 414 (453)
Q Consensus 375 ~v~~-l~-----~~~~~v~~~~~~~-~~~~lls~s~--~tIrlWD~~tG 414 (453)
.+.. .. ....+-+.+.+++ ++++++++.. ++|.||++...
T Consensus 294 ~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 294 SIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 1211 11 1123346677887 6788877754 99999987543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.90 E-value=0.13 Score=45.79 Aligned_cols=179 Identities=12% Similarity=0.068 Sum_probs=85.2
Q ss_pred EEEEEecC--C-EEEEEeCCCcEEEEECCCCeEEEE-ecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEEEEee
Q 046773 147 CRCLTLSD--L-YLACGFADGAVRLFDLTTRLHVRT-FRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~-~LaSGS~D~TIrlWD~~tg~~~~t-l~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkvWd~~ 220 (453)
-..+++++ + +++..+..+.|..++..+...... +.+.. ...+|+++ +...++....+.+++++-.
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~p~gvav~~~g~i~v~d~~~~~i~~~~~~ 86 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY---------QPQGLAVDGAGTVYVTDFNNRVVTLAAGS 86 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCC---------SCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCcc---------CceEEEEcCCCCEEEeeeeeceeeeeeec
Confidence 57888875 4 444455556666666544432211 11111 11235664 4555554444455554332
Q ss_pred cCCcceEEeeecceecCceEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc-EEecccccCCcceeeeeeeeeeccceeE
Q 046773 221 DVANETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE-VFVGGDLTDHNTVMGWRMLTEFTEFVGR 299 (453)
Q Consensus 221 ~~g~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~-~~~g~~l~~~~~v~~w~~l~~h~~~v~~ 299 (453)
. + .......+ ......|+++++|+.+ ++-.....+.+.+..+.. .... ..+. .....
T Consensus 87 ~-~-~~~~~~~~--~~~p~~iavd~~g~i~---v~d~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~p~~ 144 (260)
T d1rwia_ 87 N-N-QTVLPFDG--LNYPEGLAVDTQGAVY---VADRGNNRVVKLAAGSKTQTVLP--------------FTGL-NDPDG 144 (260)
T ss_dssp S-C-CEECCCCS--CCSEEEEEECTTCCEE---EEEGGGTEEEEECTTCSSCEECC--------------CCSC-CSCCE
T ss_pred c-c-eeeeeeee--eeecccccccccceeE---eeccccccccccccccceeeeee--------------eccc-CCcce
Confidence 2 2 11111110 1112247888998853 344455556666665544 2110 1111 23356
Q ss_pred EEEcCCce-EEEEc-CCcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEEEeCCC
Q 046773 300 VRVTSHES-AVACT-SSRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIVVENRE 356 (453)
Q Consensus 300 v~~s~~~~-~vas~-d~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s~s~dg 356 (453)
+++++++. +++.. ...|..+|.+..............-.-.+++++|+.+++-...+
T Consensus 145 i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~ 203 (260)
T d1rwia_ 145 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN 203 (260)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTT
T ss_pred eeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCC
Confidence 88887654 44433 36799999886543322111211222245666777666655555
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.83 E-value=0.18 Score=46.45 Aligned_cols=235 Identities=14% Similarity=0.129 Sum_probs=122.5
Q ss_pred EEEEecC--CEEEEEeC-------CCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCCCCEEE
Q 046773 148 RCLTLSD--LYLACGFA-------DGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLDGDIHV 216 (453)
Q Consensus 148 ~~lafs~--~~LaSGS~-------D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D~tIkv 216 (453)
...+|++ ++.++... +++|..||..+++......+.... ....-.+++|+ +..|+.+...+.|..
T Consensus 21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~----~~g~P~Gl~~~~dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG----YGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT----EECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCcccc----CCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence 4566764 55444322 468999999999865444321110 00123467776 557777777666766
Q ss_pred EEeecCCcceE-Eee-ecceecCceEEEEeCCCceeeEEEEeeCC-------------CeEEEeeCC-CCcEEecccccC
Q 046773 217 AVIDDVANETR-TAH-FGSVMDDGVLIDFTGCSRYWVGLYAGLAG-------------RAFHIWDRQ-AEEVFVGGDLTD 280 (453)
Q Consensus 217 Wd~~~~g~~~~-~~~-~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D-------------~tIrvWD~~-tg~~~~g~~l~~ 280 (453)
.+.++ +...+ ... .+.-...-.-++|+++|+.++ +-+.. .+=+||-+. .|+..
T Consensus 97 ~~~~g-~~~~~~~~~~~g~~~~~pndl~~d~~G~lyv---td~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~------- 165 (314)
T d1pjxa_ 97 VQTDG-TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWI---TAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI------- 165 (314)
T ss_dssp EETTS-CEEECCSBCTTSCBCBCCCEEEECTTSCEEE---EECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE-------
T ss_pred EeCCC-cEEEEEeccccccccCCCcEEEECCCCCEEE---ecCccCcccccccceeccCCceEEEEeecCcee-------
Confidence 66554 21111 111 111011112378999998643 32110 111233222 12210
Q ss_pred CcceeeeeeeeeeccceeEEEEcCCc------eEEEEc-CCcEEEEECCCCceEEEE------eeccCCeE-EEEEEecC
Q 046773 281 HNTVMGWRMLTEFTEFVGRVRVTSHE------SAVACT-SSRVITFDLRNQGMVLGE------RGYGRGLY-VTSVDVNA 346 (453)
Q Consensus 281 ~~~v~~w~~l~~h~~~v~~v~~s~~~------~~vas~-d~tIrlWDl~t~~~~~~~------~g~~~~~~-v~~~~~~g 346 (453)
.+......-|.++|+++. +.++.. .+.|..+|+...+.+... .+...... =.+++.+|
T Consensus 166 --------~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G 237 (314)
T d1pjxa_ 166 --------QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp --------EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred --------EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC
Confidence 111112234667776543 444433 367888887654433211 11111111 14567778
Q ss_pred CEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEE-eC-CeEEEEECC
Q 046773 347 EAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMC-VE-GVIRVWEVE 412 (453)
Q Consensus 347 ~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~-s~-~tIrlWD~~ 412 (453)
+.+++....+ .|.+++.++++.+..+........+++|.++++.|... +. ++|..-|+.
T Consensus 238 nlyVa~~~~g-------~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 238 NLLVANWGSS-------HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CEEEEEETTT-------EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred cEEEEEcCCC-------EEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 8777766667 78888888777666665544456778888877766544 44 777666654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.054 Score=53.38 Aligned_cols=100 Identities=10% Similarity=0.082 Sum_probs=55.6
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEcCCeEEEEe---------CCCCEEEEEeecCC-cceEEeee
Q 046773 162 ADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIITDSQLIFAT---------LDGDIHVAVIDDVA-NETRTAHF 231 (453)
Q Consensus 162 ~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~g~~LasgS---------~D~tIkvWd~~~~g-~~~~~~~~ 231 (453)
.|+.|.+||+.+++....+....-..+.+ .-..+++|++.|+..+ ..+.+.++|+.+ + ...+....
T Consensus 35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~-~~~~~l~~~~ 110 (465)
T d1xfda1 35 QKGTVRLWNVETNTSTVLIEGKKIESLRA---IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-GDPQSLDPPE 110 (465)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTTTTTTTC---SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-CCCEECCCTT
T ss_pred CCCcEEEEECCCCCEEEEEcCcccccccc---ceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC-CceeeccCcc
Confidence 46789999999998744443322111111 1122556677776653 345667778776 3 22221110
Q ss_pred cceecCc-eEEEEeCCCceeeEEEEeeCCCeEEEeeCCCCc
Q 046773 232 GSVMDDG-VLIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEE 271 (453)
Q Consensus 232 ~~v~~~~-~~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~ 271 (453)
. .... ....|||||+.++ - -.++.|-+.+..++.
T Consensus 111 ~--~~~~l~~~~wSPDG~~ia---f-v~~~nl~~~~~~~~~ 145 (465)
T d1xfda1 111 V--SNAKLQYAGWGPKGQQLI---F-IFENNIYYCAHVGKQ 145 (465)
T ss_dssp C--CSCCCSBCCBCSSTTCEE---E-EETTEEEEESSSSSC
T ss_pred C--CccccceeeeccCCceEE---E-EecceEEEEecCCCc
Confidence 0 0001 1257999999843 2 236778888887766
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.95 E-value=0.59 Score=42.75 Aligned_cols=189 Identities=10% Similarity=0.062 Sum_probs=98.5
Q ss_pred EEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEE-EEc-C--Cc-
Q 046773 241 IDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV-ACT-S--SR- 315 (453)
Q Consensus 241 v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v-as~-d--~t- 315 (453)
++|+++|+. .++-...+.|.-||.++++... .........+.+++++++.+. +.. + ..
T Consensus 45 ~~~D~~G~L---y~~D~~~g~I~ri~p~g~~~~~--------------~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~ 107 (319)
T d2dg1a1 45 LNFDRQGQL---FLLDVFEGNIFKINPETKEIKR--------------PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG 107 (319)
T ss_dssp EEECTTSCE---EEEETTTCEEEEECTTTCCEEE--------------EEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred CEECCCCCE---EEEECCCCEEEEEECCCCeEEE--------------EEeCCCCCeeEEEECCCCCEEEEecCCCccce
Confidence 689999984 3455678889889988876221 011122345678999887544 432 2 23
Q ss_pred -EEEEECCCCceEEEEee-c-cCCeEEEEEEecCCEEEEEeCCCccccCcceEEEEEcC-CCeeEEEEEecCCCeeEEEE
Q 046773 316 -VITFDLRNQGMVLGERG-Y-GRGLYVTSVDVNAEAYIVVENRELENQNRRLAIVRRVD-TFEEVCRFSLRADRNVNVMG 391 (453)
Q Consensus 316 -IrlWDl~t~~~~~~~~g-~-~~~~~v~~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~-tg~~v~~l~~~~~~v~~~~~ 391 (453)
|..-|..++........ . .....-..++++|+.+++-. .+... ...-.++.++ .+..+..+...-..-..+++
T Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~-~~~~~--~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~ 184 (319)
T d2dg1a1 108 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDF-RGYST--NPLGGVYYVSPDFRTVTPIIQNISVANGIAL 184 (319)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEEC-CCBTT--BCCEEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred eEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeeccc-ccccc--cCcceeEEEecccceeEEEeeccceeeeeee
Confidence 44445554432222111 1 11122345677787666532 22111 1133444443 23333333222122356788
Q ss_pred eeCCCeEEEEeC--CeEEEEECCC-CeEEEEe--------cccCCceE-EEEecCCCEEEEE-eCCcEEEEe
Q 046773 392 CMNQGYALMCVE--GVIRVWEVEG-GEYMYSF--------RERIGEEV-IAFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 392 ~~~~~~lls~s~--~tIrlWD~~t-G~~l~tL--------~gh~~~~V-~a~s~d~~~lasg-~D~~IklWD 450 (453)
+++++.+..+.. +.|..+|+.. |...... .+.... - .++.++|+..++. ..+.|.++|
T Consensus 185 s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~P-dGl~vD~~G~l~Va~~~~g~V~~~~ 255 (319)
T d2dg1a1 185 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP-DSCCIDSDDNLYVAMYGQGRVLVFN 255 (319)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE-EEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred ccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccce-eeeeEcCCCCEEEEEcCCCEEEEEC
Confidence 888887755543 8999999863 2222111 111111 1 1566788866666 677887776
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.011 Score=58.69 Aligned_cols=139 Identities=7% Similarity=-0.024 Sum_probs=83.0
Q ss_pred cCCcEEEEECCCCceEEEE---eeccCCeEEEEEEecCCEEEEEeCCCccc--c-CcceEEEEEcCCCeeEEEE--EecC
Q 046773 312 TSSRVITFDLRNQGMVLGE---RGYGRGLYVTSVDVNAEAYIVVENRELEN--Q-NRRLAIVRRVDTFEEVCRF--SLRA 383 (453)
Q Consensus 312 ~d~tIrlWDl~t~~~~~~~---~g~~~~~~v~~~~~~g~~l~s~s~dg~~~--~-~~~~i~Iw~~~tg~~v~~l--~~~~ 383 (453)
.++.|.+||+.+++..... ........-..++||++.++..+.-. .. . .....-|+|+.+++..... ...+
T Consensus 35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~-~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~ 113 (465)
T d1xfda1 35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVE-PIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN 113 (465)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCC-CCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEccc-ceeEeeccccEEEEEccCCceeeccCccCCc
Confidence 3467999999887542222 11122333456889888876654311 00 0 0116677888887543211 1112
Q ss_pred CCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEEEec-ccCCc------------------eEEEEecCCCEEEEE--e
Q 046773 384 DRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMYSFR-ERIGE------------------EVIAFVGDDRHVAAS--C 442 (453)
Q Consensus 384 ~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~tL~-gh~~~------------------~V~a~s~d~~~lasg--~ 442 (453)
..++...++|+|++++-..++.|.+.+..+++.++... |-.+. .-.-+||||++||-. .
T Consensus 114 ~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D 193 (465)
T d1xfda1 114 AKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (465)
T ss_dssp CCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred cccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence 23455678999999888888889999988876554332 22111 011368999999876 6
Q ss_pred CCcEEEEec
Q 046773 443 GTNIHLWDF 451 (453)
Q Consensus 443 D~~IklWDl 451 (453)
|..|+.+.+
T Consensus 194 ~s~V~~~~~ 202 (465)
T d1xfda1 194 DSRVPIMEL 202 (465)
T ss_dssp CTTSCEEEE
T ss_pred ccccceeec
Confidence 777777654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.51 E-value=0.88 Score=41.53 Aligned_cols=219 Identities=10% Similarity=0.056 Sum_probs=115.6
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEECCCCeEEEEecCCCCCccccccceEEEEEEc--CCeEEEEeCC--CCEEEEEee
Q 046773 147 CRCLTLSD--LYLACGFADGAVRLFDLTTRLHVRTFRPQHSDRLGQFSRAVSGIIIT--DSQLIFATLD--GDIHVAVID 220 (453)
Q Consensus 147 v~~lafs~--~~LaSGS~D~TIrlWD~~tg~~~~tl~gh~~~~~~~~s~~V~~i~f~--g~~LasgS~D--~tIkvWd~~ 220 (453)
...++|++ ++.++-...++|.-||.++++....+..... ...+|+|+ |+.+++...+ ....+..++
T Consensus 42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~--------~p~gla~~~dG~l~va~~~~~~~~~~i~~~~ 113 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA--------NPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 113 (319)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSS--------SEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCC--------CeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence 56788864 6777888899999999998876665543221 23567775 5555554333 344555554
Q ss_pred cCC--cceEEeeecceecCceEEEEeCCCceeeEEEEeeCC-------CeEEEeeCCCCcEEecccccCCcceeeeeeee
Q 046773 221 DVA--NETRTAHFGSVMDDGVLIDFTGCSRYWVGLYAGLAG-------RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLT 291 (453)
Q Consensus 221 ~~g--~~~~~~~~~~v~~~~~~v~Fs~dg~~~~~LaSgS~D-------~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~ 291 (453)
..+ +.....+.... ....-++++++|++++ + ..+ +.+...+...+.. ..+.
T Consensus 114 ~~~~~~~~~~~~~~~~-~~~nd~~~d~~G~l~v---t-d~~~~~~~~~g~v~~~~~dg~~~---------------~~~~ 173 (319)
T d2dg1a1 114 ENGDNLQDIIEDLSTA-YCIDDMVFDSKGGFYF---T-DFRGYSTNPLGGVYYVSPDFRTV---------------TPII 173 (319)
T ss_dssp TTSCSCEEEECSSSSC-CCEEEEEECTTSCEEE---E-ECCCBTTBCCEEEEEECTTSCCE---------------EEEE
T ss_pred CCCceeeeeccCCCcc-cCCcceeEEeccceee---c-ccccccccCcceeEEEeccccee---------------EEEe
Confidence 322 11111111110 0011378999998632 2 221 1233333333221 1111
Q ss_pred eeccceeEEEEcCCc--eEEEEc-CCcEEEEECCCCc-eEEEE------eeccCCeE-EEEEEecCCEEEEEeCCCcccc
Q 046773 292 EFTEFVGRVRVTSHE--SAVACT-SSRVITFDLRNQG-MVLGE------RGYGRGLY-VTSVDVNAEAYIVVENRELENQ 360 (453)
Q Consensus 292 ~h~~~v~~v~~s~~~--~~vas~-d~tIrlWDl~t~~-~~~~~------~g~~~~~~-v~~~~~~g~~l~s~s~dg~~~~ 360 (453)
.....-+.++|++++ +.++.. .+.|..+|+.... ..... ........ =.+++.+|+.+++....+
T Consensus 174 ~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g---- 249 (319)
T d2dg1a1 174 QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG---- 249 (319)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT----
T ss_pred eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC----
Confidence 112334779999876 445543 4789999987532 11111 00001111 146777888777777777
Q ss_pred CcceEEEEEcCCCeeEEEEEecC------CCeeEEEEeeCCCeEEEE
Q 046773 361 NRRLAIVRRVDTFEEVCRFSLRA------DRNVNVMGCMNQGYALMC 401 (453)
Q Consensus 361 ~~~~i~Iw~~~tg~~v~~l~~~~------~~v~~~~~~~~~~~lls~ 401 (453)
.|.+++- .|+.+..+..-. ....+++|.+....++.+
T Consensus 250 ---~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 250 ---RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp ---EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred ---EEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEE
Confidence 7777774 677777765421 123455665554444433
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.90 E-value=2.4 Score=36.14 Aligned_cols=53 Identities=9% Similarity=0.015 Sum_probs=34.1
Q ss_pred eEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeCCeEEEEECCCCeEEE
Q 046773 364 LAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVEGVIRVWEVEGGEYMY 418 (453)
Q Consensus 364 ~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~~tIrlWD~~tG~~l~ 418 (453)
.+-+.++++++ +..++...+ .....+++|++.++-.+++.|.+.|+++|+.-.
T Consensus 215 ~l~~~d~~g~~-~~~lt~~~~-~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 215 QIYSTDLDGKD-LRKHTSFTD-YYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp EEEEEETTSCS-CEECCCCCS-SCEEEEEESSSCEEEEETTEEEEECTTTCCEEE
T ss_pred ceEEEeCCCCc-eEEeecCCC-cccccCcCCCCEEEEEeCCEEEEEECCCCCEEE
Confidence 44555666554 333433322 223457899999887667889999999987643
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=91.34 E-value=1.6 Score=43.55 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=44.8
Q ss_pred CeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEE-eeccCCeE
Q 046773 260 RAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLY 338 (453)
Q Consensus 260 ~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~ 338 (453)
++|.-||+.||+.. |..-.+....-..+...++-++.++.|+.++.+|.+||+.+-.. .+......
T Consensus 457 G~l~AiD~~tGk~~-------------W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~ 523 (573)
T d1kb0a2 457 GRLLAWDPVAQKAA-------------WSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA 523 (573)
T ss_dssp EEEEEEETTTTEEE-------------EEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccEEEeCCCCCceE-------------eeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcccc
Confidence 35777888888743 22111111111234445554566677899999999999988654 22111122
Q ss_pred EEEEEecCCEEEEE
Q 046773 339 VTSVDVNAEAYIVV 352 (453)
Q Consensus 339 v~~~~~~g~~l~s~ 352 (453)
...+..+|+.++..
T Consensus 524 P~ty~~~GkQYv~v 537 (573)
T d1kb0a2 524 PSTYMVDGRQYVSV 537 (573)
T ss_dssp CEEEEETTEEEEEE
T ss_pred CEEEEECCEEEEEE
Confidence 24456678765443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=90.19 E-value=5.9 Score=35.21 Aligned_cols=172 Identities=9% Similarity=0.004 Sum_probs=89.7
Q ss_pred CCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEEEEcCCcEEEEECCCCceEEEE--eeccC
Q 046773 258 AGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAVACTSSRVITFDLRNQGMVLGE--RGYGR 335 (453)
Q Consensus 258 ~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~--~g~~~ 335 (453)
..+.|.-||.++++.-. -.....++++.+.+++.++.+....|.++|+.+++...-. .....
T Consensus 38 ~~~~I~r~d~~~g~~~~----------------~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~~~ 101 (295)
T d2ghsa1 38 LERELHELHLASGRKTV----------------HALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLP 101 (295)
T ss_dssp GGTEEEEEETTTTEEEE----------------EECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCT
T ss_pred CCCEEEEEECCCCeEEE----------------EECCCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecCCC
Confidence 45778888988887211 0112456777777666444444457899999998643211 11122
Q ss_pred CeEEE--EEEecCCEEEEEeCCCccccCcceEEEEEcCCCeeEEEEEecCCCeeEEEEeeCCCeEEEEeC--CeEEEEEC
Q 046773 336 GLYVT--SVDVNAEAYIVVENRELENQNRRLAIVRRVDTFEEVCRFSLRADRNVNVMGCMNQGYALMCVE--GVIRVWEV 411 (453)
Q Consensus 336 ~~~v~--~~~~~g~~l~s~s~dg~~~~~~~~i~Iw~~~tg~~v~~l~~~~~~v~~~~~~~~~~~lls~s~--~tIrlWD~ 411 (453)
....+ .++++|+..++..... .. .....++....++....+.. -..-..++++++++.+..+.. +.|..+++
T Consensus 102 ~~~~nd~~vd~~G~iw~~~~~~~-~~--~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~ 177 (295)
T d2ghsa1 102 GNRSNDGRMHPSGALWIGTMGRK-AE--TGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPL 177 (295)
T ss_dssp TEEEEEEEECTTSCEEEEEEETT-CC--TTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred cccceeeEECCCCCEEEEecccc-cc--ccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeee
Confidence 23333 3567776665533222 11 11445666666653332221 112346677788877665543 88888876
Q ss_pred CC------Ce--EEEEecccCCceEE--EEecCCCEEEEE-eCCcEEEEe
Q 046773 412 EG------GE--YMYSFRERIGEEVI--AFVGDDRHVAAS-CGTNIHLWD 450 (453)
Q Consensus 412 ~t------G~--~l~tL~gh~~~~V~--a~s~d~~~lasg-~D~~IklWD 450 (453)
.. ++ ....+.+-.+. .. ++..+|++-++. ..+.|..+|
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~g~-pdG~~vD~~GnlWva~~~~g~V~~~d 226 (295)
T d2ghsa1 178 DARTGLPTGKAEVFIDSTGIKGG-MDGSVCDAEGHIWNARWGEGAVDRYD 226 (295)
T ss_dssp CTTTCCBSSCCEEEEECTTSSSE-EEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred cccccccccceEEEeccCccccc-ccceEEcCCCCEEeeeeCCCceEEec
Confidence 42 11 11122222222 22 445666655554 455566555
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.95 E-value=13 Score=36.35 Aligned_cols=51 Identities=10% Similarity=-0.030 Sum_probs=31.6
Q ss_pred EEEcCCceEEEEcCCcEEEEECCCCceEEEE-eeccCCeEEEEEEecCCEEE
Q 046773 300 VRVTSHESAVACTSSRVITFDLRNQGMVLGE-RGYGRGLYVTSVDVNAEAYI 350 (453)
Q Consensus 300 v~~s~~~~~vas~d~tIrlWDl~t~~~~~~~-~g~~~~~~v~~~~~~g~~l~ 350 (453)
|...++-+++++.|+.++.+|.+||+.+-.. .+......-..+..+|+.++
T Consensus 471 l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi 522 (571)
T d2ad6a1 471 LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence 3334444566677899999999999987654 22221122244566787654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.82 E-value=8.6 Score=34.03 Aligned_cols=177 Identities=6% Similarity=-0.050 Sum_probs=95.4
Q ss_pred EEEEeCCCceeeEEEEeeCCCeEEEeeCCCCcEEecccccCCcceeeeeeeeeeccceeEEEEcCCceEE-EEcC-----
Q 046773 240 LIDFTGCSRYWVGLYAGLAGRAFHIWDRQAEEVFVGGDLTDHNTVMGWRMLTEFTEFVGRVRVTSHESAV-ACTS----- 313 (453)
Q Consensus 240 ~v~Fs~dg~~~~~LaSgS~D~tIrvWD~~tg~~~~g~~l~~~~~v~~w~~l~~h~~~v~~v~~s~~~~~v-as~d----- 313 (453)
.+++.++|+++ + ++. .-|.++|.++++.-.-...... .-....+.+.+++++.+- ++.+
T Consensus 63 ~i~~~~dg~l~---v-a~~-~gl~~~d~~tg~~~~l~~~~~~----------~~~~~~nd~~vd~~G~iw~~~~~~~~~~ 127 (295)
T d2ghsa1 63 ALAKISDSKQL---I-ASD-DGLFLRDTATGVLTLHAELESD----------LPGNRSNDGRMHPSGALWIGTMGRKAET 127 (295)
T ss_dssp EEEEEETTEEE---E-EET-TEEEEEETTTCCEEEEECSSTT----------CTTEEEEEEEECTTSCEEEEEEETTCCT
T ss_pred EEEEecCCCEE---E-EEe-CccEEeecccceeeEEeeeecC----------CCcccceeeEECCCCCEEEEeccccccc
Confidence 37788888853 2 344 4588999999882110000000 001246777888877543 3321
Q ss_pred CcEEEEECCCCceEEEEeeccCCeEEEEEEecCCEEEE-EeCCCccccCcceEEEEEcCC--C----eeEEEEEe--cCC
Q 046773 314 SRVITFDLRNQGMVLGERGYGRGLYVTSVDVNAEAYIV-VENRELENQNRRLAIVRRVDT--F----EEVCRFSL--RAD 384 (453)
Q Consensus 314 ~tIrlWDl~t~~~~~~~~g~~~~~~v~~~~~~g~~l~s-~s~dg~~~~~~~~i~Iw~~~t--g----~~v~~l~~--~~~ 384 (453)
..-.+|.+..++......+.. ...-.+++++++.+.. -+..+ .|..++.+. + +....+.. ...
T Consensus 128 ~~g~l~~~~~g~~~~~~~~~~-~~Ng~~~s~d~~~l~~~dt~~~-------~I~~~~~d~~~~~~~~~~~~~~~~~~~~g 199 (295)
T d2ghsa1 128 GAGSIYHVAKGKVTKLFADIS-IPNSICFSPDGTTGYFVDTKVN-------RLMRVPLDARTGLPTGKAEVFIDSTGIKG 199 (295)
T ss_dssp TCEEEEEEETTEEEEEEEEES-SEEEEEECTTSCEEEEEETTTC-------EEEEEEBCTTTCCBSSCCEEEEECTTSSS
T ss_pred cceeEeeecCCcEEEEeeccC-CcceeeecCCCceEEEeecccc-------eeeEeeecccccccccceEEEeccCcccc
Confidence 245677777664322222211 1123456777775544 34444 555555542 1 11111111 122
Q ss_pred CeeEEEEeeCCCeEEEEeC-CeEEEEECCCCeEEEEecccCCceEE--EEe-cCCCEE-EEE
Q 046773 385 RNVNVMGCMNQGYALMCVE-GVIRVWEVEGGEYMYSFRERIGEEVI--AFV-GDDRHV-AAS 441 (453)
Q Consensus 385 ~v~~~~~~~~~~~lls~s~-~tIrlWD~~tG~~l~tL~gh~~~~V~--a~s-~d~~~l-asg 441 (453)
....++...++...++.-. +.|..+|. +|+.+..+.-.... ++ +|- +|.+.| +++
T Consensus 200 ~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~-~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 200 GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQ-TTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSB-EEEEEEESTTSCEEEEEE
T ss_pred cccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCc-eEEEEEeCCCCCEEEEEE
Confidence 2456666677776666655 88999995 68888887655555 66 454 576655 443
|