Citrus Sinensis ID: 046803
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 580 | 2.2.26 [Sep-21-2011] | |||||||
| P93011 | 583 | Pentatricopeptide repeat- | yes | no | 0.987 | 0.982 | 0.622 | 0.0 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.970 | 0.710 | 0.415 | 1e-139 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.9 | 0.825 | 0.416 | 1e-133 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.962 | 0.937 | 0.424 | 1e-132 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.981 | 0.917 | 0.387 | 1e-131 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.924 | 0.723 | 0.417 | 1e-130 | |
| Q9ZVF4 | 584 | Pentatricopeptide repeat- | no | no | 0.979 | 0.972 | 0.415 | 1e-130 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.903 | 0.732 | 0.415 | 1e-128 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.977 | 0.926 | 0.398 | 1e-127 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.979 | 0.897 | 0.385 | 1e-126 |
| >sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/577 (62%), Positives = 457/577 (79%), Gaps = 4/577 (0%)
Query: 7 HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
+S AYEAI++AGPR+K LQQVHAHLIV GYGRSRS+LTKL++L C A I Y +F +
Sbjct: 8 NSAAYEAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSV 67
Query: 67 PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
P PD FLFN++I SK + +YRRM+ SN+SPSNYTF++VIKSCA LS L +G+
Sbjct: 68 PLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGK 127
Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
VHCH VSG+ D +VQAALV FY+K +++ AR+VFDRMP+KS+VAWNS++SG+EQNG
Sbjct: 128 GVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNG 187
Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
A EAI +F MR+ G PDS T V +L+ACAQ G + LG WVH++I+ +GLD+NV L T
Sbjct: 188 LADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGT 247
Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVR 305
+LIN+Y+RCG+V KARE+FD M E NV AWTAMIS YG HGYG +AVELF++M G
Sbjct: 248 ALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPI 307
Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
PNNVTFVAVLSACAHAGLV+EG V+ M + Y L+PGVEHHVCMVD+ GRAG L+EAYK
Sbjct: 308 PNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYK 367
Query: 366 FVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
F+ D G+ APA+WTAMLGACKMH+N+DLGVE+A+ L+++EP+NPGH+VMLSNIYAL
Sbjct: 368 FIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYAL 427
Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
+G+ D V +R+ M++ L+K VGYS +EV+ K Y+FSMGD+SH T EIY+YL+ L+ R
Sbjct: 428 SGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISR 487
Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
C+E GY P SE MH++EEEE+E++LRYHSEKLA+AFGL++T + I IVKNLR+C DC
Sbjct: 488 CKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDC 546
Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
HSA K+IS+ +NR+I VRD+LRFHHF+ GSCSCLDYW
Sbjct: 547 HSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 237/570 (41%), Positives = 358/570 (62%), Gaps = 7/570 (1%)
Query: 14 ILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
IL A L+ L+ Q+H+ G +LT +SL G I +F PD
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPD 286
Query: 71 SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHC 130
+N +I + + SL ++ +++S + T +++ HL ++ A+H
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI---YAIHG 343
Query: 131 HVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKE 190
+ S + S V AL Y+K N ++ ARK+FD P+KS+ +WN+MISGY QNG ++
Sbjct: 344 YCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTED 403
Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
AI LF M+ +P+ T C+L+ACAQLG + LG+WVH+ + + ++ ++T+LI
Sbjct: 404 AISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIG 463
Query: 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
MYA+CG++++AR +FD+M++ N + W MISGYG+HG G EA+ +F+ M G+ P VT
Sbjct: 464 MYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVT 523
Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
F+ VL AC+HAGLV+EG +F SM YG P V+H+ CMVD+ GRAG L A +F+ +
Sbjct: 524 FLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFI-EA 582
Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430
+ +P +VW +LGAC++HK+ +L V+E L ++P+N G++V+LSNI++ +
Sbjct: 583 MSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQA 642
Query: 431 EVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490
VR ++ L K GY+ +E+ + ++F+ GD+SHP EIY+ L++L G+ REAGY
Sbjct: 643 ATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQ 702
Query: 491 PESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFI 550
PE+E A+H++EEEERE ++ HSE+LA+AFGL+ T PG IRI+KNLR+C+DCH+ K I
Sbjct: 703 PETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLI 762
Query: 551 SVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
S T R I+VRD RFHHFK G CSC DYW
Sbjct: 763 SKITERVIVVRDANRFHHFKDGVCSCGDYW 792
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1226), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/560 (41%), Positives = 348/560 (62%), Gaps = 38/560 (6%)
Query: 54 GFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI 113
G I ++ +F PD FLF I S + L Y +++ S I+P+ +TFS+++
Sbjct: 78 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLL 137
Query: 114 KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS-- 171
KSC+ S G+ +H HV G D +V LV+ YAK +V A+KVFDRMP++S
Sbjct: 138 KSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLV 193
Query: 172 -----------------------------VVAWNSMISGYEQNGFAKEAIGLFN-LMRDF 201
+V+WN MI GY Q+GF +A+ LF L+ +
Sbjct: 194 SSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEG 253
Query: 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
PD T V L+AC+Q+G ++ GRW+H F+ + +NV + T LI+MY++CG++ +A
Sbjct: 254 KPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEA 313
Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFVAVLSACAH 320
+F+ +++AW AMI+GY MHGY +A+ LF+ M+ G++P ++TF+ L ACAH
Sbjct: 314 VLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAH 373
Query: 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
AGLV EG R+F SM QEYG+ P +EH+ C+V L GRAG L AY+ +K++ + + +W
Sbjct: 374 AGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADS-VLW 432
Query: 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440
+++LG+CK+H +F LG E+AE+L+ + +N G YV+LSNIYA G + V VRN+M +K
Sbjct: 433 SSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEK 492
Query: 441 GLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL 500
G+ K G ST+E++ K + F GD+ H + EIY L ++ R + GYVP + + + +L
Sbjct: 493 GIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDL 552
Query: 501 EEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIV 560
EE E+E SL+ HSE+LA+A+GL+ T PG ++I KNLR+C DCH+ K IS T R+I++
Sbjct: 553 EETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVM 612
Query: 561 RDRLRFHHFKRGSCSCLDYW 580
RDR RFHHF GSCSC D+W
Sbjct: 613 RDRNRFHHFTDGSCSCGDFW 632
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Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 241/568 (42%), Positives = 360/568 (63%), Gaps = 10/568 (1%)
Query: 21 LKPLQQVHAHLIVAGYGRSRSMLTK-----LLSLVCDAGFITYAQRIFFCIPSP-DSFLF 74
+ L+Q+HA I G S + L K L+SL ++YA ++F I P + F++
Sbjct: 30 ITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPP-MSYAHKVFSKIEKPINVFIW 88
Query: 75 NTLIIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF 133
NTLI ++ S + YR M VS + P +T+ +IK+ ++ + LG +H V
Sbjct: 89 NTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVI 148
Query: 134 VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG 193
SG+ S ++VQ +L++ YA +V A KVFD+MP+K +VAWNS+I+G+ +NG +EA+
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208
Query: 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253
L+ M G+ PD T V +L+ACA++G + LG+ VH +++ GL N+ + L+++YA
Sbjct: 209 LYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268
Query: 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFV 312
RCG V +A+ +FD M + N ++WT++I G ++G+G EA+ELF M + G+ P +TFV
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328
Query: 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372
+L AC+H G+V+EG F MR+EY + P +EH CMVDL RAG + +AY+++K +
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKS-MP 387
Query: 373 EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432
+P +W +LGAC +H + DL +L +EP + G YV+LSN+YA R V+
Sbjct: 388 MQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQK 447
Query: 433 VRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPE 492
+R M++ G+KK G+S VEV + + F MGDKSHP ++ IY L E+ GR R GYVP+
Sbjct: 448 IRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQ 507
Query: 493 SESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISV 552
+ ++EEEE+E ++ YHSEK+A+AF L+ T I +VKNLR+C DCH AIK +S
Sbjct: 508 ISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSK 567
Query: 553 ATNREIIVRDRLRFHHFKRGSCSCLDYW 580
NREI+VRDR RFHHFK GSCSC DYW
Sbjct: 568 VYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/607 (38%), Positives = 368/607 (60%), Gaps = 38/607 (6%)
Query: 11 YEAI--LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLV---CDAGFITYAQRIFFC 65
YE + L+ + + L+Q+HA ++ G + +TK LS + F+ YAQ +F
Sbjct: 15 YETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDG 74
Query: 66 IPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125
PD+FL+N +I S ++ SLL Y+RM+ S+ + YTF +++K+C++LS
Sbjct: 75 FDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEET 134
Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS-------- 177
+H + GY++D++ +L+N YA + N +A +FDR+P+ V+WNS
Sbjct: 135 TQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKA 194
Query: 178 -----------------------MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214
MISGY Q KEA+ LF+ M++ V PD+ + L
Sbjct: 195 GKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANAL 254
Query: 215 AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274
+ACAQLG ++ G+W+H ++ + ++ VL LI+MYA+CG + +A E+F + + +V
Sbjct: 255 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314
Query: 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334
AWTA+ISGY HG+G EA+ F M+ G++PN +TF AVL+AC++ GLV+EG +F SM
Sbjct: 315 AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 374
Query: 335 RQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394
++Y L P +EH+ C+VDL GRAGLL+EA +F+++ + KP +W A+L AC++HKN +
Sbjct: 375 ERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQE-MPLKPNAVIWGALLKACRIHKNIE 433
Query: 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVD 454
LG E+ E L++++P + G YV +NI+A+ + D+ R +M ++G+ K G ST+ ++
Sbjct: 434 LGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLE 493
Query: 455 QKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHEL-EEEEREYSLRYHS 513
+ F GD+SHP +I + + E GYVPE E + +L +++ERE + HS
Sbjct: 494 GTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHS 553
Query: 514 EKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGS 573
EKLA+ +GL++T PG IRI+KNLR+C DCH K IS R+I++RDR RFHHF+ G
Sbjct: 554 EKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGK 613
Query: 574 CSCLDYW 580
CSC DYW
Sbjct: 614 CSCGDYW 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/539 (41%), Positives = 341/539 (63%), Gaps = 3/539 (0%)
Query: 44 TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
T L+ G+I AQ++F IP D +N +I ++ ++L ++ M+ +N+
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
P T V+ +CA + LGR VH + G+ S+L + AL++ Y+K ++ A +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323
Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
F+R+P K V++WN++I GY KEA+ LF M G P+ T + +L ACA LG I
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383
Query: 224 DLGRWVHEFIVG--QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
D+GRW+H +I +G+ L TSLI+MYA+CG++ A ++F+ + ++ +W AMI
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443
Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
G+ MHG + +LF RMR G++P+++TFV +LSAC+H+G++ G +F +M Q+Y +
Sbjct: 444 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 503
Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
P +EH+ CM+DL G +GL + + + +++ +P +W ++L ACKMH N +LG AE
Sbjct: 504 PKLEHYGCMIDLLGHSGLF-KEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAE 562
Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
+L+ +EPENPG YV+LSNIYA AGR + V R ++ KG+KK G S++E+D + F
Sbjct: 563 NLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFI 622
Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFG 521
+GDK HP EIY L+E+ +AG+VP++ + E+EEE +E +LR+HSEKLA+AFG
Sbjct: 623 IGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFG 682
Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
L+ T PG + IVKNLR+C +CH A K IS REII RDR RFHHF+ G CSC DYW
Sbjct: 683 LISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 237/571 (41%), Positives = 359/571 (62%), Gaps = 3/571 (0%)
Query: 12 EAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS 71
E + + + K L+++HA ++ G+ S+LT+LL + G + YA+++F + P
Sbjct: 15 ELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRI 74
Query: 72 FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
FL+NTL + +SLL Y++M + P +T+ V+K+ + L + G A+H H
Sbjct: 75 FLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAH 134
Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
V G+ V LV Y K + A +F+ M K +VAWN+ ++ Q G + A
Sbjct: 135 VVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIA 194
Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
+ FN M V DS T V +L+AC QLG +++G +++ + +D N+++ + ++M
Sbjct: 195 LEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDM 254
Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
+ +CGN AR +F+ M + NV++W+ MI GY M+G EA+ LF M+ G+RPN VTF
Sbjct: 255 HLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTF 314
Query: 312 VAVLSACAHAGLVQEGHRVFASMRQ--EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
+ VLSAC+HAGLV EG R F+ M Q + L P EH+ CMVDL GR+GLL EAY+F+K
Sbjct: 315 LGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKK 374
Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
+ E P +W A+LGAC +H++ LG +VA+ L+ P+ ++V+LSNIYA AG+ D
Sbjct: 375 MPVE-PDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDC 433
Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
V+ VR+ M + G KK YS+VE + K + F+ GDKSHP + IY+ LDE++ + R+ GY
Sbjct: 434 VDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGY 493
Query: 490 VPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
VP++ S H++E EE+E SL +HSEKLA+AFGL++ PG IR++KNLR C DCH+ KF
Sbjct: 494 VPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKF 553
Query: 550 ISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
+S T+ EII+RD+ RFHHF+ G CSC ++W
Sbjct: 554 VSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/525 (41%), Positives = 337/525 (64%), Gaps = 1/525 (0%)
Query: 56 ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115
I +R+F +P D +NT+I +++ D+L R M +++ P ++T S+V+
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175
+ + G+ +H +V G DSD+++ ++LV+ YAKS ++ + +VF R+ + ++W
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
NS+++GY QNG EA+ LF M V P + V+ ACA L + LG+ +H +++
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371
Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
G N+ +A++L++MY++CGN+ AR+IFD M+ L+ ++WTA+I G+ +HG+G EAV L
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431
Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355
F M+ GV+PN V FVAVL+AC+H GLV E F SM + YGL +EH+ + DL G
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491
Query: 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415
RAG L EAY F+ + E P +VW+ +L +C +HKN +L +VAE + +V+ EN G YV
Sbjct: 492 RAGKLEEAYNFISKMCVE-PTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYV 550
Query: 416 MLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQ 475
++ N+YA GR + +R M +KGL+K S +E+ K + F GD+SHP+ ++I +
Sbjct: 551 LMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINE 610
Query: 476 YLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVK 535
+L +M + + GYV ++ +H+++EE + L HSE+LA+AFG++ T PG TIR+ K
Sbjct: 611 FLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTK 670
Query: 536 NLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
N+R+C DCH AIKFIS T REIIVRD RFHHF RG+CSC DYW
Sbjct: 671 NIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1169), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/603 (39%), Positives = 354/603 (58%), Gaps = 36/603 (5%)
Query: 13 AILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVC--DAGFITYAQRIFFCIPSPD 70
A+L +G K ++Q+HA L V G + ++ + V D ++ YA +I P
Sbjct: 11 ALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPT 70
Query: 71 SFLFNTLIIRNSKANFSTDSLLFYRRMIVS--NISPSNYTFSAVIKSCAHLSILNLGRAV 128
F N++I + K+ S FYRR++ S ++ P NYT + ++++C L + G V
Sbjct: 71 LFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQV 130
Query: 129 HCHVFVSGYDSDLHVQAALVNFYA-------------------------------KSNNV 157
H G+D+D HVQ L++ YA + +V
Sbjct: 131 HGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDV 190
Query: 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC 217
ARK+F+ MP++ +AWN+MISGY Q G ++EA+ +F+LM+ GV + + VL+AC
Sbjct: 191 VFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSAC 250
Query: 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277
QLG +D GRW H +I + + V LAT+L+++YA+CG++ KA E+F M E NV W+
Sbjct: 251 TQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWS 310
Query: 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337
+ ++G M+G+G + +ELF M+ GV PN VTFV+VL C+ G V EG R F SMR E
Sbjct: 311 SALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNE 370
Query: 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397
+G+ P +EH+ C+VDL+ RAG L +A ++ + KP AVW+++L A +M+KN +LGV
Sbjct: 371 FGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQ-MPMKPHAAVWSSLLHASRMYKNLELGV 429
Query: 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKN 457
++ +L +E N G YV+LSNIYA + D V VR M KG++K G S +EV+ +
Sbjct: 430 LASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEV 489
Query: 458 YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLA 517
+ F +GDKSHP +I ++ R R AGY ++ M +++EEE+E +L HSEK A
Sbjct: 490 HEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAA 549
Query: 518 LAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCL 577
+AFG+M + IRIVKNLR+C DCH IS NREIIVRDR RFHHFK G CSC
Sbjct: 550 IAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCN 609
Query: 578 DYW 580
+W
Sbjct: 610 GFW 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/573 (38%), Positives = 356/573 (62%), Gaps = 5/573 (0%)
Query: 11 YEAILKAGPRLKPLQQ---VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
Y +LK K L Q VHAH++ + + M LL++ G + A+++F +P
Sbjct: 63 YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122
Query: 68 SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
D + TLI S+ + D+LLF+ +M+ SP+ +T S+VIK+ A G
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182
Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
+H G+DS++HV +AL++ Y + +D A+ VFD + ++ V+WN++I+G+ +
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242
Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
++A+ LF M G P + + AC+ G ++ G+WVH +++ G + +
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 302
Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
L++MYA+ G++ AR+IFD +++ +V++W ++++ Y HG+G EAV F MR G+RPN
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362
Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
++F++VL+AC+H+GL+ EG + M+++ G++P H+V +VDL GRAG LN A +F+
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFI 421
Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
+++ E P A+W A+L AC+MHKN +LG AEH+ ++P++PG +V+L NIYA GR
Sbjct: 422 EEMPIE-PTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRW 480
Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
+ VR M + G+KK S VE++ ++F D+ HP EI + +E++ + +E
Sbjct: 481 NDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKEL 540
Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
GYVP++ + ++++ERE +L+YHSEK+ALAF L+ T PG TI I KN+R+C DCH+AI
Sbjct: 541 GYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAI 600
Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
K S REIIVRD RFHHFK G+CSC DYW
Sbjct: 601 KLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 580 | ||||||
| 449479601 | 663 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.871 | 0.683 | 0.0 | |
| 449434342 | 599 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.964 | 0.683 | 0.0 | |
| 356546233 | 582 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.994 | 0.694 | 0.0 | |
| 224125332 | 585 | predicted protein [Populus trichocarpa] | 0.996 | 0.988 | 0.721 | 0.0 | |
| 227463000 | 592 | pentatricopeptide repeat protein [Gossyp | 0.986 | 0.966 | 0.706 | 0.0 | |
| 356519586 | 582 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.994 | 0.701 | 0.0 | |
| 224079221 | 584 | predicted protein [Populus trichocarpa] | 0.994 | 0.988 | 0.702 | 0.0 | |
| 359496160 | 561 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.937 | 0.969 | 0.677 | 0.0 | |
| 297823173 | 583 | pentatricopeptide repeat-containing prot | 0.987 | 0.982 | 0.622 | 0.0 | |
| 15226158 | 583 | pentatricopeptide repeat-containing prot | 0.987 | 0.982 | 0.622 | 0.0 |
| >gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/578 (68%), Positives = 492/578 (85%)
Query: 3 NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
+ Q HSP +EA+L++GPRL+ LQQVHAH+IV+G RSRS+LTKL+SLVC AG ITYA+R+
Sbjct: 86 DTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRL 145
Query: 63 FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
F +P+PDSFLF++L+ SK FS D++LFYRRM+ S SNYTF++VIK+CA LS L
Sbjct: 146 FPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSAL 205
Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
LG+ +H HV V GY SD++VQAAL+ YAK++++ VA+KVFD MP ++++AWNS+ISGY
Sbjct: 206 RLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGY 265
Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
+QNG +E+IGLF+LM + G PDS T V +L++C+QLG +D G W+H++ G G D+NV
Sbjct: 266 DQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNV 325
Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
VL TSLINMY RCGNVSKARE+FD M E NV+ WTAMISGYGMHGYG +A+ELF MRA+
Sbjct: 326 VLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAY 385
Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
G RPNN+TFVAVLSACAH+GL+ +G RVF+SM++ YGL+PGVEH+VCMVD+FGRAGLLN+
Sbjct: 386 GPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLND 445
Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
AY+F+K I ++P PAVWT+MLGAC+MH+NFDLGV+VAEH+LSVEPENPGHYVMLSNIYA
Sbjct: 446 AYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYA 505
Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
LAGRMDRVE+VRN+M ++ LKK VGYST+E+++K YLFSMGDKSHP TN IY+YLDELM
Sbjct: 506 LAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMC 565
Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
RC E+GYVP ES MH+LEEEER+Y+LRYHSEKLALAFGL++T+ G TIRIVKNLR+C D
Sbjct: 566 RCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICED 625
Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
CHSAIK IS+ +REIIVRD+ RFHHFK GSCSCLDYW
Sbjct: 626 CHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/578 (68%), Positives = 492/578 (85%)
Query: 3 NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
+ Q HSP +EA+L++GPRL+ LQQVHAH+IV+G RSRS+LTKL+SLVC AG ITYA+R+
Sbjct: 22 DTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRL 81
Query: 63 FFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL 122
F +P+PDSFLF++L+ SK FS D++LFYRRM+ S SNYTF++VIK+CA LS L
Sbjct: 82 FPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSAL 141
Query: 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGY 182
LG+ +H HV V GY SD++VQAAL+ YAK++++ VA+KVFD MP ++++AWNS+ISGY
Sbjct: 142 RLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGY 201
Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
+QNG +E+IGLF+LM + G PDS T V +L++C+QLG +D G W+H++ G G D+NV
Sbjct: 202 DQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNV 261
Query: 243 VLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302
VL TSLINMY RCGNVSKARE+FD M E NV+ WTAMISGYGMHGYG +A+ELF MRA+
Sbjct: 262 VLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAY 321
Query: 303 GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362
G RPNN+TFVAVLSACAH+GL+ +G RVF+SM++ YGL+PGVEH+VCMVD+FGRAGLLN+
Sbjct: 322 GPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLND 381
Query: 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
AY+F+K I ++P PAVWT+MLGAC+MH+NFDLGV+VAEH+LSVEPENPGHYVMLSNIYA
Sbjct: 382 AYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYA 441
Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMG 482
LAGRMDRVE+VRN+M ++ LKK VGYST+E+++K YLFSMGDKSHP TN IY+YLDELM
Sbjct: 442 LAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMC 501
Query: 483 RCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVD 542
RC E+GYVP ES MH+LEEEER+Y+LRYHSEKLALAFGL++T+ G TIRIVKNLR+C D
Sbjct: 502 RCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICED 561
Query: 543 CHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
CHSAIK IS+ +REIIVRD+ RFHHFK GSCSCLDYW
Sbjct: 562 CHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/579 (69%), Positives = 481/579 (83%)
Query: 2 KNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
K ++ S YEA++ AGP L+ LQQ HAHL+V G RSR++LTKLL+L C AG I Y +R
Sbjct: 4 KERKIKSAEYEAVVSAGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRR 63
Query: 62 IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
+F + PDSFLFN+LI +SK FS D++LFYRRM++S I PS YTF++VIK+CA LS+
Sbjct: 64 LFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSL 123
Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
L +G VH HVFVSGY SD VQAAL+ FYAKS VARKVFD MP +S+VAWNSMISG
Sbjct: 124 LCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISG 183
Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
YEQNG A EA+ +FN MR+ V PDS T V VL+AC+QLG +D G W+H+ IVG G+ +N
Sbjct: 184 YEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMN 243
Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
VVLATSL+NM++RCG+V +AR +F M E NV+ WTAMISGYGMHGYG EA+E+FHRM+A
Sbjct: 244 VVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKA 303
Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
GV PN+VTFVAVLSACAHAGL+ EG VFASM+QEYG++PGVEHHVCMVD+FGR GLLN
Sbjct: 304 RGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLN 363
Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
EAY+FVK + ++ PAVWTAMLGACKMHKNFDLGVEVAE+L++ EPENPGHYV+LSN+Y
Sbjct: 364 EAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMY 423
Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
ALAGRMDRVE VRN+MIQ+GLKK VGYST++VD ++YLFSMGDKSHP TNEIY +LDEL+
Sbjct: 424 ALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELI 483
Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
RC++AGY P ESAMHELE EEREY+LRYHSEKLA+AFGLM+T G+T+RIVKNLR+C
Sbjct: 484 WRCKDAGYAPVPESAMHELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICE 543
Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
DCHSAIKFIS NREIIVRD+LRFHHF+ GSCSC DYW
Sbjct: 544 DCHSAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/579 (72%), Positives = 488/579 (84%), Gaps = 1/579 (0%)
Query: 3 NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
+K PHSPAY +L+AGPRL L QVHAH+IV+GYGRSRS+LTKLL+L C AG I+Y ++I
Sbjct: 7 HKLPHSPAYNFLLQAGPRLYLLHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQI 66
Query: 63 FFCIPSPDSFLFNTLIIRNSKA-NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
F +P+PDSFLF +LI SK+ NFS SL FY RM++SN+SPSNYTF++VIKSCA LS
Sbjct: 67 FLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSA 126
Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
L GR VH HV V G+ D++VQAALV Y K ++ ARKVFD++ ++S+VAWNSMISG
Sbjct: 127 LKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISG 186
Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
YEQNGFAKEAIGLF+ M++ GV PDS T V VL+ACA LG LG WVHE+IVG GLD+N
Sbjct: 187 YEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLN 246
Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
VVL TSLINMY RCGNVSKARE+FD M E NV+AWTAMISGYG +GYG++AVELFH MR
Sbjct: 247 VVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRR 306
Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
+G+ PN++TFVAVLSACAHAGLV EG R+FAS+R+EY L+PGVEH+VC+VD+ GRAGLL+
Sbjct: 307 NGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLD 366
Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
EAY F+K+ I E PAPA+ TAMLGACKMHKNFDLG +VAEHLL+ EPENP HYV+LSNIY
Sbjct: 367 EAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIY 426
Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
ALAGRMD+VE+VRN MI+K LKK VGYSTVEVDQK YLFSMGDKSH TN IY YLDELM
Sbjct: 427 ALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELM 486
Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
+C EAGYVP S+S MHELEEEEREY+LRYHSEKLA+AFGL++TS G IRIVKNLRMC
Sbjct: 487 WKCSEAGYVPVSDSVMHELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCE 546
Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
DCHSAIKFIS ++REIIVRD+LRFHHFK GSCSCLDYW
Sbjct: 547 DCHSAIKFISAISSREIIVRDKLRFHHFKVGSCSCLDYW 585
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum] gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/573 (70%), Positives = 483/573 (84%), Gaps = 1/573 (0%)
Query: 9 PAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLV-CDAGFITYAQRIFFCIP 67
P Y +I+ AGPRLKPLQQ+HA +I+ G GR+RS++TKLLS A I+Y +R+FF IP
Sbjct: 20 PIYHSIILAGPRLKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIP 79
Query: 68 SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
PD+FLF++LI SK +F +SLL YRRM+++NIS SNYTFSAVIKS A L+ ++G
Sbjct: 80 KPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGET 139
Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
+HCHV++ GY D +VQAALV+FYAKS +V +ARKVFD+MP+K+VVAWNSMISGYEQNGF
Sbjct: 140 IHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGF 199
Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
KEA+ LF LM+D GV PDS+T V +L+ACAQ+G I LG WVHE+I D+NVVL T+
Sbjct: 200 GKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTA 259
Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
L+NMY+RCGNVSKARE+FD M E N++AWTAMISGYGMHG+G++A+ELF+ M G RPN
Sbjct: 260 LMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPN 319
Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
NVTFVAVLSACAHAGLV EG ++F +M+QEYGL+P VEH VCMVD+ GRAG LNEAY+F+
Sbjct: 320 NVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFI 379
Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
K+ ++PAPAVWTAMLGACKMHKNFDLGVEVAEHLLS+EPENPGHYVMLSNIYALAGRM
Sbjct: 380 KNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRM 439
Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
DRVE +RNIMI+ LKK VGYST++VD K YLFSMGDKSHP TN+IY YLDELM RCREA
Sbjct: 440 DRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREA 499
Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
GY+P SES MHE+EEEEREY+LRYHSEKLA+AFGL++T G+ IRIVKNLRMC DCH+AI
Sbjct: 500 GYIPASESVMHEVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAI 559
Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
K+IS+ NREI VRDRLRFHHFK GSCSC DYW
Sbjct: 560 KYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/579 (70%), Positives = 483/579 (83%)
Query: 2 KNKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQR 61
K ++ S YEA++ AGP L+ LQQ HAHL+V G RSR++LTKLL+L C AG I Y +R
Sbjct: 4 KERRRKSAEYEAVVSAGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRR 63
Query: 62 IFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
+F + PDSFLFN+LI +S FS D++ FYRRM+ S I PS YTF++VIK+CA LS+
Sbjct: 64 LFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSL 123
Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
L LG VH HVFVSGY S+ VQAALV FYAKS VARKVFD MP +S++AWNSMISG
Sbjct: 124 LRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISG 183
Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
YEQNG A EA+ +FN MR+ G PDS T V VL+AC+QLG +DLG W+HE IVG G+ +N
Sbjct: 184 YEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMN 243
Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
VVLATSL+NM++RCG+V +AR +FD M+E NV++WTAMISGYGMHGYG EA+E+FHRM+A
Sbjct: 244 VVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKA 303
Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
GV PN VT+VAVLSACAHAGL+ EG VFASM+QEYG++PGVEHHVCMVD+FGR GLLN
Sbjct: 304 CGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLN 363
Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
EAY+FV+ + E+ PAVWTAMLGACKMHKNFDLGVEVAE+L+S EPENPGHYV+LSN+Y
Sbjct: 364 EAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMY 423
Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
ALAGRMDRVE VRN+MIQ+GLKK VGYST++V+ ++YLFSMGDKSHP TNEIY YLDELM
Sbjct: 424 ALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELM 483
Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
RC++AGY P ESAMHELEEEEREY+LRYHSEKLA+AFGLM+T G+T+RIVKNLR+C
Sbjct: 484 WRCKDAGYAPAPESAMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICE 543
Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
DCHSAIKFISV NREIIVRD+LRFHHF+ GSCSC DYW
Sbjct: 544 DCHSAIKFISVVMNREIIVRDKLRFHHFREGSCSCSDYW 582
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/579 (70%), Positives = 482/579 (83%), Gaps = 2/579 (0%)
Query: 3 NKQPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
+K PHSPAY +L+AGPRLK L QVHAH+IV+GYG SR +LTKLL+L C AG I+Y ++I
Sbjct: 7 HKHPHSPAYNLLLQAGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQI 66
Query: 63 FFCIPSPDSFLFNTLIIRNSK-ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI 121
F +P+PDSFLF +LI SK NFS SL FY RM++SN++PSNYTF++VIKSCA L
Sbjct: 67 FLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVA 126
Query: 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISG 181
L GR +H HV V+G+ SD++VQ AL++FY K + ARKVFD+M D+SVV WNSMISG
Sbjct: 127 LRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISG 186
Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241
YEQNGFAKEAI LF+ M++ GV P+S T V VL+ACA LG LG WVHE+ VG GLD+N
Sbjct: 187 YEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLN 246
Query: 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301
VVL TSLINMY RCGNVSKARE+FD M E NV+AWTAMISGYG +GYG++AVELFH MR
Sbjct: 247 VVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRR 306
Query: 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361
+G+ PN++TFVAVLSACAHAGLV EG RVF SMR+EY L+P VEHHVC+VD+ GRAGLL+
Sbjct: 307 NGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLD 366
Query: 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421
EAY F+K+ I E+PAPA+WTAMLGACKMHKNF LG +VAEH L+ EP NP HYV+LSNIY
Sbjct: 367 EAYNFIKE-IHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIY 425
Query: 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481
ALAGRMD+VE+VR+ MI+K LKK VGYST+++D+K YLFSMGDKSH TNEIY YLD+LM
Sbjct: 426 ALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLM 485
Query: 482 GRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCV 541
+CREAGYV S+S MHELEEEEREY+L YHSEKLA+AFGL++TS G IRIVKNLRMC
Sbjct: 486 RKCREAGYVTVSDSVMHELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCE 545
Query: 542 DCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
DCHSAIK+ISV +NREIIVRD+LRFHHFK GSCSCLDYW
Sbjct: 546 DCHSAIKYISVISNREIIVRDKLRFHHFKNGSCSCLDYW 584
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/574 (67%), Positives = 458/574 (79%), Gaps = 30/574 (5%)
Query: 7 HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
HSPAY+ +L AGPRLKPLQQVHAHLIV+G RSR++LTKLL+L C AG I Y +++FF I
Sbjct: 18 HSPAYQVLLHAGPRLKPLQQVHAHLIVSGSYRSRALLTKLLTLACTAGSILYTRQLFFSI 77
Query: 67 PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
+PDSFLFN +I +SK FS D++LFYRRM+ +I SNYTF+AVIK+CA +S L +GR
Sbjct: 78 TNPDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVIKACADISALRIGR 137
Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
+H HV V GYDSD VQAAL+ FYAKS +V A+KVFDRMP+++++AWNSMISGY+QNG
Sbjct: 138 PIHSHVLVCGYDSDSFVQAALIAFYAKSGDVGEAKKVFDRMPERTIIAWNSMISGYDQNG 197
Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
F+KEA+GLF MR+ GV DS T V VL+AC+Q G +DLG WVH++IV DVNVVL T
Sbjct: 198 FSKEAVGLFYRMRELGVEFDSATFVSVLSACSQSGALDLGCWVHDYIVNNSFDVNVVLGT 257
Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306
SLINMY RCGNVSKARE+FD M+E NV+AWTAMISGYGMHGYG EA+ELF MR HG
Sbjct: 258 SLINMYTRCGNVSKAREVFDEMNERNVVAWTAMISGYGMHGYGREAIELFRLMRIHG--- 314
Query: 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366
MRQ+YGL+P VEHHVCMVD+ GRAG LNEA+++
Sbjct: 315 ---------------------------MRQDYGLVPRVEHHVCMVDMLGRAGFLNEAFQY 347
Query: 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426
+KD+ + APA+WTAMLGACKMHKN DLGV+VAEHLL+ EPENP HYV+LSN+YALAGR
Sbjct: 348 IKDLKQGEQAPALWTAMLGACKMHKNLDLGVQVAEHLLAAEPENPSHYVLLSNVYALAGR 407
Query: 427 MDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCRE 486
M+RVE+VRN+MI+KGLKK VGYS +EV QK+YLFSMGD+SHP T EIY+YLDELM R +E
Sbjct: 408 MERVEMVRNMMIRKGLKKQVGYSIIEVGQKSYLFSMGDRSHPETTEIYKYLDELMLRSKE 467
Query: 487 AGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSA 546
AGYVP E MHELEEEEREY+LRYHSEKLA+AFGLM+TS GMTIRIVKNLRMC DCHSA
Sbjct: 468 AGYVPAPELVMHELEEEEREYALRYHSEKLAIAFGLMKTSHGMTIRIVKNLRMCEDCHSA 527
Query: 547 IKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
IKFIS NREIIVRD+LRFHHFK G CSC DYW
Sbjct: 528 IKFISNIANREIIVRDKLRFHHFKNGLCSCQDYW 561
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/577 (62%), Positives = 457/577 (79%), Gaps = 4/577 (0%)
Query: 7 HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
+S AYEAI++AGPR+K LQQVHAHLIV YGRSRS+LTKL++L C A I Y +F +
Sbjct: 8 NSAAYEAIVRAGPRVKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFLSV 67
Query: 67 PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
P PD FLFN++I SK + +YRRM+ SN+SPSNYTF++VIKSCA LS L +G+
Sbjct: 68 PLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGK 127
Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
VHCH VSG+ D +VQAALV FY+K +++ AR+VFDRMP+KSVVAWNS++SG+EQNG
Sbjct: 128 GVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNG 187
Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
A++AI +F MR+ G PDS T V +L+ACAQ G I LG WVH++IV +GLDVNV L T
Sbjct: 188 LAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGT 247
Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVR 305
+LIN+Y+RCG+V KARE+FD M E NV AWTAMIS YG HGYG +AV+LF++M G
Sbjct: 248 ALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSI 307
Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
PNNVTFVAVLSACAHAGLV++G V+ M + Y L+PGVEHHVC+VD+ GRAG L+EAY+
Sbjct: 308 PNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYR 367
Query: 366 FVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
F++ D G APA+WTAMLGACKMH+N+DLGVE+A+ L+++EPENPGH+VMLSNIYAL
Sbjct: 368 FIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYAL 427
Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
+G+ D V +R+ M++ L+K VGYS +EV+ K YLFSMGD+SH T EIY+YL+ L+ R
Sbjct: 428 SGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISR 487
Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
C+E GY P SE MH++EEEE+E++LRYHSEKLA+AFGL++T I +VKNLR+C DC
Sbjct: 488 CKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVDS-AITVVKNLRICEDC 546
Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
HSA K+IS+ +NR+IIVRD+LRFHHF+ GSCSCLDYW
Sbjct: 547 HSAFKYISIVSNRQIIVRDKLRFHHFQNGSCSCLDYW 583
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana] gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/577 (62%), Positives = 457/577 (79%), Gaps = 4/577 (0%)
Query: 7 HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
+S AYEAI++AGPR+K LQQVHAHLIV GYGRSRS+LTKL++L C A I Y +F +
Sbjct: 8 NSAAYEAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSV 67
Query: 67 PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
P PD FLFN++I SK + +YRRM+ SN+SPSNYTF++VIKSCA LS L +G+
Sbjct: 68 PLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGK 127
Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
VHCH VSG+ D +VQAALV FY+K +++ AR+VFDRMP+KS+VAWNS++SG+EQNG
Sbjct: 128 GVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNG 187
Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
A EAI +F MR+ G PDS T V +L+ACAQ G + LG WVH++I+ +GLD+NV L T
Sbjct: 188 LADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGT 247
Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVR 305
+LIN+Y+RCG+V KARE+FD M E NV AWTAMIS YG HGYG +AVELF++M G
Sbjct: 248 ALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPI 307
Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
PNNVTFVAVLSACAHAGLV+EG V+ M + Y L+PGVEHHVCMVD+ GRAG L+EAYK
Sbjct: 308 PNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYK 367
Query: 366 FVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
F+ D G+ APA+WTAMLGACKMH+N+DLGVE+A+ L+++EP+NPGH+VMLSNIYAL
Sbjct: 368 FIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYAL 427
Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
+G+ D V +R+ M++ L+K VGYS +EV+ K Y+FSMGD+SH T EIY+YL+ L+ R
Sbjct: 428 SGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISR 487
Query: 484 CREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
C+E GY P SE MH++EEEE+E++LRYHSEKLA+AFGL++T + I IVKNLR+C DC
Sbjct: 488 CKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDC 546
Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
HSA K+IS+ +NR+I VRD+LRFHHF+ GSCSCLDYW
Sbjct: 547 HSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 580 | ||||||
| TAIR|locus:2057574 | 583 | AT2G33760 [Arabidopsis thalian | 0.987 | 0.982 | 0.596 | 5.1e-193 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.968 | 0.709 | 0.395 | 3e-117 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.956 | 0.932 | 0.410 | 1e-114 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.924 | 0.723 | 0.402 | 1.9e-113 | |
| TAIR|locus:2049562 | 584 | AT2G01510 "AT2G01510" [Arabido | 0.979 | 0.972 | 0.395 | 9.7e-112 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.994 | 0.713 | 0.371 | 1.8e-110 | |
| TAIR|locus:2102852 | 657 | CRR2 "AT3G46790" [Arabidopsis | 0.996 | 0.879 | 0.382 | 1.8e-110 | |
| TAIR|locus:2080727 | 623 | MEF10 "mitochondrial RNA editi | 0.977 | 0.910 | 0.385 | 9e-109 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.953 | 0.839 | 0.395 | 5.7e-107 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.953 | 0.671 | 0.390 | 2.5e-106 |
| TAIR|locus:2057574 AT2G33760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1870 (663.3 bits), Expect = 5.1e-193, P = 5.1e-193
Identities = 344/577 (59%), Positives = 437/577 (75%)
Query: 7 HSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI 66
+S AYEAI++AGPR+K LQQVHAHLIV GYGRSRS+LTKL++L C A I Y +F +
Sbjct: 8 NSAAYEAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSV 67
Query: 67 PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
P PD FLFN++I SK + +YRRM+ SN+SPSNYTF++VIKSCA LS L +G+
Sbjct: 68 PLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGK 127
Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNG 186
VHCH VSG+ D +VQAALV FY+K +++ AR+VFDRMP+KS+VAWNS++SG+EQNG
Sbjct: 128 GVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNG 187
Query: 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT 246
A EAI +F MR+ G PDS T V +L+ACAQ G + LG WVH++I+ +GLD+NV L T
Sbjct: 188 LADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGT 247
Query: 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVR 305
+LIN+Y+RCG+V KARE+FD M E NV AWTAMIS YG HGYG +AVELF++M G
Sbjct: 248 ALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPI 307
Query: 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYK 365
PNNVTFVAVLSACAHAGLV+EG V+ M + Y L+PGVEHHVCMVD+ GRAG L+EAYK
Sbjct: 308 PNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYK 367
Query: 366 FVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423
F+ D G+ APA+WTAMLGACKMH+N+DLGVE+A+ L+++EP+NPGH+VMLSNIYAL
Sbjct: 368 FIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYAL 427
Query: 424 AGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGR 483
+G+ D V +R+ M++ L+K VGYS +EV+ K Y+FSMGD+SH T EIY+YL+ L+ R
Sbjct: 428 SGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISR 487
Query: 484 CREAGYVPXXXXXXXXXXXXXXXXXXXXXXXKLALAFGLMRTSPGMTIRIVKNLRMCVDC 543
C+E GY P KLA+AFGL++T + I IVKNLR+C DC
Sbjct: 488 CKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDC 546
Query: 544 HSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
HSA K+IS+ +NR+I VRD+LRFHHF+ GSCSCLDYW
Sbjct: 547 HSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 226/571 (39%), Positives = 341/571 (59%)
Query: 14 ILKAGPRLKPLQ---QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD 70
IL A L+ L+ Q+H+ G +LT +SL G I +F PD
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPD 286
Query: 71 SFLFNTLIIRNSKANFSTD-SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129
+N +I +N T+ SL ++ +++S + T +++ HL ++ A+H
Sbjct: 287 IVAYNAMI-HGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIY---AIH 342
Query: 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAK 189
+ S + S V AL Y+K N ++ ARK+FD P+KS+ +WN+MISGY QNG +
Sbjct: 343 GYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTE 402
Query: 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249
+AI LF M+ +P+ T C+L+ACAQLG + LG+WVH+ + + ++ ++T+LI
Sbjct: 403 DAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALI 462
Query: 250 NMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309
MYA+CG++++AR +FD+M++ N + W MISGYG+HG G EA+ +F+ M G+ P V
Sbjct: 463 GMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPV 522
Query: 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
TF+ VL AC+HAGLV+EG +F SM YG P V+H+ CMVD+ GRAG L A +F+ +
Sbjct: 523 TFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFI-E 581
Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
+ +P +VW +LGAC++HK+ +L V+E L ++P+N G++V+LSNI++ +
Sbjct: 582 AMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQ 641
Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
VR ++ L K GY+ +E+ + ++F+ GD+SHP EIY+ L++L G+ REAGY
Sbjct: 642 AATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGY 701
Query: 490 VPXXXXXXXXXXXXXXXXXXXXXXXKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
P +LA+AFGL+ T PG IRI+KNLR+C+DCH+ K
Sbjct: 702 QPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKL 761
Query: 550 ISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
IS T R I+VRD RFHHFK G CSC DYW
Sbjct: 762 ISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 232/565 (41%), Positives = 343/565 (60%)
Query: 24 LQQVHAHLIVAGYGRSRSMLTK-----LLSLVCDAGFITYAQRIFFCIPSP-DSFLFNTL 77
L+Q+HA I G S + L K L+SL ++YA ++F I P + F++NTL
Sbjct: 33 LRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPP-MSYAHKVFSKIEKPINVFIWNTL 91
Query: 78 IIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG 136
I ++ S + YR M VS + P +T+ +IK+ ++ + LG +H V SG
Sbjct: 92 IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151
Query: 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFN 196
+ S ++VQ +L++ YA +V A KVFD+MP+K +VAWNS+I+G+ +NG +EA+ L+
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYT 211
Query: 197 LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256
M G+ PD T V +L+ACA++G + LG+ VH +++ GL N+ + L+++YARCG
Sbjct: 212 EMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCG 271
Query: 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFVAVL 315
V +A+ +FD M + N ++WT++I G ++G+G EA+ELF M + G+ P +TFV +L
Sbjct: 272 RVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGIL 331
Query: 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375
AC+H G+V+EG F MR+EY + P +EH CMVDL RAG + +AY+++K + +P
Sbjct: 332 YACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSM-PMQP 390
Query: 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435
+W +LGAC +H + DL +L +EP + G YV+LSN+YA R V+ +R
Sbjct: 391 NVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRK 450
Query: 436 IMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPXXXX 495
M++ G+KK G+S VEV + + F MGDKSHP ++ IY L E+ GR R GYVP
Sbjct: 451 QMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISN 510
Query: 496 XXXXXXXXXXXXXXXXXXXKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATN 555
K+A+AF L+ T I +VKNLR+C DCH AIK +S N
Sbjct: 511 VYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYN 570
Query: 556 REIIVRDRLRFHHFKRGSCSCLDYW 580
REI+VRDR RFHHFK GSCSC DYW
Sbjct: 571 REIVVRDRSRFHHFKNGSCSCQDYW 595
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
Identities = 217/539 (40%), Positives = 325/539 (60%)
Query: 44 TKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS 103
T L+ G+I AQ++F IP D +N +I ++ ++L ++ M+ +N+
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163
P T V+ +CA + LGR VH + G+ S+L + AL++ Y+K ++ A +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323
Query: 164 FDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223
F+R+P K V++WN++I GY KEA+ LF M G P+ T + +L ACA LG I
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383
Query: 224 DLGRWVHEFIVGQ--GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMIS 281
D+GRW+H +I + G+ L TSLI+MYA+CG++ A ++F+ + ++ +W AMI
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443
Query: 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341
G+ MHG + +LF RMR G++P+++TFV +LSAC+H+G++ G +F +M Q+Y +
Sbjct: 444 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 503
Query: 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401
P +EH+ CM+DL G +GL EA + + +++ +P +W ++L ACKMH N +LG AE
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMI-NMMEMEPDGVIWCSLLKACKMHGNVELGESFAE 562
Query: 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFS 461
+L+ +EPENPG YV+LSNIYA AGR + V R ++ KG+KK G S++E+D + F
Sbjct: 563 NLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFI 622
Query: 462 MGDKSHPNTNEIYQYLDELMGRCREAGYVPXXXXXXXXXXXXXXXXXXXXXXXKLALAFG 521
+GDK HP EIY L+E+ +AG+VP KLA+AFG
Sbjct: 623 IGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFG 682
Query: 522 LMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
L+ T PG + IVKNLR+C +CH A K IS REII RDR RFHHF+ G CSC DYW
Sbjct: 683 LISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2049562 AT2G01510 "AT2G01510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
Identities = 226/571 (39%), Positives = 342/571 (59%)
Query: 12 EAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS 71
E + + + K L+++HA ++ G+ S+LT+LL + G + YA+++F + P
Sbjct: 15 ELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRI 74
Query: 72 FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131
FL+NTL + +SLL Y++M + P +T+ V+K+ + L + G A+H H
Sbjct: 75 FLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAH 134
Query: 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191
V G+ V LV Y K + A +F+ M K +VAWN+ ++ Q G + A
Sbjct: 135 VVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIA 194
Query: 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251
+ FN M V DS T V +L+AC QLG +++G +++ + +D N+++ + ++M
Sbjct: 195 LEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDM 254
Query: 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311
+ +CGN AR +F+ M + NV++W+ MI GY M+G EA+ LF M+ G+RPN VTF
Sbjct: 255 HLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTF 314
Query: 312 VAVLSACAHAGLVQEGHRVFASMRQ--EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369
+ VLSAC+HAGLV EG R F+ M Q + L P EH+ CMVDL GR+GLL EAY+F+K
Sbjct: 315 LGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKK 374
Query: 370 VIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429
+ E P +W A+LGAC +H++ LG +VA+ L+ P+ ++V+LSNIYA AG+ D
Sbjct: 375 MPVE-PDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDC 433
Query: 430 VEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489
V+ VR+ M + G KK YS+VE + K + F+ GDKSHP + IY+ LDE++ + R+ GY
Sbjct: 434 VDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGY 493
Query: 490 VPXXXXXXXXXXXXXXXXXXXXXXXKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKF 549
VP KLA+AFGL++ PG IR++KNLR C DCH+ KF
Sbjct: 494 VPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKF 553
Query: 550 ISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
+S T+ EII+RD+ RFHHF+ G CSC ++W
Sbjct: 554 VSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
Identities = 216/582 (37%), Positives = 350/582 (60%)
Query: 2 KNKQPHSPAYEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
+N +P ++L A L+ + +++H + + +G+ ++ T L+ + G +
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLET 289
Query: 59 AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
A+++F + + +N++I + +++L +++M+ + P++ + + +CA
Sbjct: 290 ARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACAD 349
Query: 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSM 178
L L GR +H G D ++ V +L++ Y K VD A +F ++ +++V+WN+M
Sbjct: 350 LGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAM 409
Query: 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238
I G+ QNG +A+ F+ MR V PD+ T V V+ A A+L +W+H ++ L
Sbjct: 410 ILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCL 469
Query: 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHR 298
D NV + T+L++MYA+CG + AR IFDMMSE +V W AMI GYG HG+G A+ELF
Sbjct: 470 DKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEE 529
Query: 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358
M+ ++PN VTF++V+SAC+H+GLV+ G + F M++ Y + ++H+ MVDL GRAG
Sbjct: 530 MQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAG 589
Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418
LNEA+ F+ + KPA V+ AMLGAC++HKN + + AE L + P++ G++V+L+
Sbjct: 590 RLNEAWDFIMQM-PVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLA 648
Query: 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478
NIY A ++V VR M+++GL+K G S VE+ + + F G +HP++ +IY +L+
Sbjct: 649 NIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLE 708
Query: 479 ELMGRCREAGYVPXXXXXXXXXXXXXXXXXXXXXXXKLALAFGLMRTSPGMTIRIVKNLR 538
+L+ +EAGYVP KLA++FGL+ T+ G TI + KNLR
Sbjct: 709 KLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSE-KLAISFGLLNTTAGTTIHVRKNLR 767
Query: 539 MCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
+C DCH+A K+IS+ T REI+VRD RFHHFK G+CSC DYW
Sbjct: 768 VCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
Identities = 225/588 (38%), Positives = 348/588 (59%)
Query: 2 KNKQPHSPAYEA-ILKAGPR--LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITY 58
+ P YE IL G R L +VH H++ G + + TKL+ + D G + Y
Sbjct: 71 QESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDY 130
Query: 59 AQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC-- 116
A+++F +++N L + A + L Y +M + +T++ V+K+C
Sbjct: 131 ARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVA 190
Query: 117 AHLSILNL--GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVA 174
+ ++ +L G+ +H H+ GY S +++ LV+ YA+ VD A VF MP ++VV+
Sbjct: 191 SECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVS 250
Query: 175 WNSMISGYEQNGFAKEAIGLFN-LMRDF-GVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232
W++MI+ Y +NG A EA+ F +MR+ +P+S T V VL ACA L ++ G+ +H +
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGY 310
Query: 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292
I+ +GLD + + ++L+ MY RCG + + +FD M + +V++W ++IS YG+HGYG +A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370
Query: 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352
+++F M A+G P VTFV+VL AC+H GLV+EG R+F +M +++G+ P +EH+ CMVD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVD 430
Query: 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412
L GRA L+EA K V+D+ E P P VW ++LG+C++H N +L + L ++EP+N G
Sbjct: 431 LLGRANRLDEAAKMVQDMRTE-PGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAG 489
Query: 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472
+YV+L++IYA A D V+ V+ ++ +GL+K G +EV +K Y F D+ +P +
Sbjct: 490 NYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQ 549
Query: 473 IYQYLDELMGRCREAGYVPXXXXXXXXXXXXXXXXXXXXXXXKLALAFGLMRTSPGMTIR 532
I+ +L +L +E GY+P KLALAFGL+ TS G IR
Sbjct: 550 IHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIR 609
Query: 533 IVKNLRMCVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
I KNLR+C DCH KFIS +EI+VRD RFH FK G CSC DYW
Sbjct: 610 ITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
|
|
| TAIR|locus:2080727 MEF10 "mitochondrial RNA editing factor 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
Identities = 224/581 (38%), Positives = 338/581 (58%)
Query: 6 PHSPAYEAILKAGPRLK-PL--QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRI 62
P + ++ ILK+ L P+ QQ+H H+ G +LT L+S+ C G + A+++
Sbjct: 51 PDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKV 110
Query: 63 FFCIPSPD--SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120
F P S +N LI + + TD+ +RRM + +S + T ++ C
Sbjct: 111 FEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPE 170
Query: 121 ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMIS 180
L LGR++H G DS++ V + + Y K +V+ R++FD MP K ++ WN++IS
Sbjct: 171 YLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVIS 230
Query: 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240
GY QNG A + + L+ M+ GV PD T V VL++CA LG +G V + + G
Sbjct: 231 GYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVP 290
Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMR 300
NV ++ + I+MYARCGN++KAR +FD+M ++++WTAMI YGMHG G + LF M
Sbjct: 291 NVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMI 350
Query: 301 AHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL 360
G+RP+ FV VLSAC+H+GL +G +F +M++EY L PG EH+ C+VDL GRAG L
Sbjct: 351 KRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRL 410
Query: 361 NEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420
+EA +F++ + E P AVW A+LGACK+HKN D+ ++ EP N G+YV++SNI
Sbjct: 411 DEAMEFIESMPVE-PDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNI 469
Query: 421 YALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDEL 480
Y+ + + + +R +M ++ +K GYS VE + +LF GD+SH T E+++ LDEL
Sbjct: 470 YSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDEL 529
Query: 481 MGRCRE-AGYVPXXXXXXXXXXXXXXXXXXXXXXXKLALAFGLMRTSPGMTIRIVKNLRM 539
E AG + +LA+AFG++ + PG I ++KNLR+
Sbjct: 530 ETSVMELAGNMDCDRGEEVSSTTREHSE-------RLAIAFGILNSIPGTEILVIKNLRV 582
Query: 540 CVDCHSAIKFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
C DCH +K +S +R+ +VRD RFH+FK G CSC DYW
Sbjct: 583 CEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
Identities = 224/567 (39%), Positives = 340/567 (59%)
Query: 25 QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
+Q H V GY + + L+ + G + A+++F IP + + T +IR
Sbjct: 96 KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSW-TSMIRGYDL 154
Query: 85 NFST-DSLLFYRRMIVSNISPSNYTFS------AVIKSCAHLSILNLGRAVHCHVFVSGY 137
N + D++ ++ ++V + F +VI +C+ + L ++H V G+
Sbjct: 155 NGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGF 214
Query: 138 DSDLHVQAALVNFYAKSNN--VDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195
D + V L++ YAK V VARK+FD++ DK V++NS++S Y Q+G + EA +F
Sbjct: 215 DRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVF 274
Query: 196 N-LMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254
L+++ V ++ T VL A + G + +G+ +H+ ++ GL+ +V++ TS+I+MY +
Sbjct: 275 RRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCK 334
Query: 255 CGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314
CG V AR+ FD M NV +WTAMI+GYGMHG+ +A+ELF M GVRPN +TFV+V
Sbjct: 335 CGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSV 394
Query: 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374
L+AC+HAGL EG R F +M+ +G+ PG+EH+ CMVDL GRAG L +AY ++ + K
Sbjct: 395 LAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM-KMK 453
Query: 375 PAPAVWTAMLGACKMHKNFDLG-VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVV 433
P +W+++L AC++HKN +L + VA L ++ N G+Y++LS+IYA AGR VE V
Sbjct: 454 PDSIIWSSLLAACRIHKNVELAEISVAR-LFELDSSNCGYYMLLSHIYADAGRWKDVERV 512
Query: 434 RNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPXX 493
R IM +GL K G+S +E++ + ++F +GD+ HP +IY++L EL + EAGYV
Sbjct: 513 RMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNT 572
Query: 494 XXXXXXXXXXXXXXXXXXXXXKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVA 553
KLA+AFG+M T PG T+ +VKNLR+C DCH+ IK IS
Sbjct: 573 SSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKI 632
Query: 554 TNREIIVRDRLRFHHFKRGSCSCLDYW 580
+RE +VRD RFHHFK G CSC DYW
Sbjct: 633 VDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 217/556 (39%), Positives = 327/556 (58%)
Query: 27 VHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANF 86
+H++ I G + KL+ L + G + Q++F + D +N++I
Sbjct: 269 IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQ 328
Query: 87 STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLHVQA 145
++ ++ M +S I P T ++ + L + R+V G+ D+ +
Sbjct: 329 PLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGN 388
Query: 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VN 204
A+V YAK VD AR VF+ +P+ V++WN++ISGY QNGFA EAI ++N+M + G +
Sbjct: 389 AVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA 448
Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
+ T V VL AC+Q G + G +H ++ GL ++V + TSL +MY +CG + A +
Sbjct: 449 ANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSL 508
Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
F + +N + W +I+ +G HG+G +AV LF M GV+P+++TFV +LSAC+H+GLV
Sbjct: 509 FYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLV 568
Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
EG F M+ +YG+ P ++H+ CMVD++GRAG L A KF+K + +P ++W A+L
Sbjct: 569 DEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSM-SLQPDASIWGALL 627
Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
AC++H N DLG +EHL VEPE+ G++V+LSN+YA AG+ + V+ +R+I KGL+K
Sbjct: 628 SACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRK 687
Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPXXXXXXXXXXXXX 504
G+S++EVD K +F G+++HP E+Y+ L L + + GYVP
Sbjct: 688 TPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDE 747
Query: 505 XXXXXXXXXXKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
+LA+AF L+ T TIRI KNLR+C DCHS KFIS T REIIVRD
Sbjct: 748 KEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSN 807
Query: 565 RFHHFKRGSCSCLDYW 580
RFHHFK G CSC DYW
Sbjct: 808 RFHHFKNGVCSCGDYW 823
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P93011 | PP182_ARATH | No assigned EC number | 0.6221 | 0.9879 | 0.9828 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 580 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-168 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-136 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-68 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-62 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-45 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-40 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 493 bits (1271), Expect = e-168
Identities = 223/573 (38%), Positives = 350/573 (61%), Gaps = 4/573 (0%)
Query: 11 YEAILKAGPRLKPL---QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP 67
Y+A+++A LK + + V+ H+ +G+ + M+ ++L + G + A+R+F +P
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185
Query: 68 SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127
+ + T+I A ++ +R M TF ++++ A L G+
Sbjct: 186 ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245
Query: 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187
+HC V +G D V AL++ Y+K +++ AR VFD MP+K+ VAWNSM++GY +G+
Sbjct: 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGY 305
Query: 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
++EA+ L+ MRD GV+ D T ++ ++L ++ + H ++ G +++V T+
Sbjct: 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365
Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
L+++Y++ G + AR +FD M N+I+W A+I+GYG HG GT+AVE+F RM A GV PN
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425
Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
+VTF+AVLSAC ++GL ++G +F SM + + + P H+ CM++L GR GLL+EAY +
Sbjct: 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485
Query: 368 KDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427
+ KP +W A+L AC++HKN +LG AE L + PE +YV+L N+Y +GR
Sbjct: 486 RRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544
Query: 428 DRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREA 487
V + +KGL H + +EV ++++ F GD+ HP + EIYQ LDELM E
Sbjct: 545 AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY 604
Query: 488 GYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAI 547
GYV E + +++E+E + S RYHSEKLA+AFGL+ TS ++I ++ R+C DCH I
Sbjct: 605 GYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVI 664
Query: 548 KFISVATNREIIVRDRLRFHHFKRGSCSCLDYW 580
KFI++ T REI+VRD RFHHFK G CSC DYW
Sbjct: 665 KFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 416 bits (1071), Expect = e-136
Identities = 202/554 (36%), Positives = 321/554 (57%), Gaps = 4/554 (0%)
Query: 25 QQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKA 84
+++H +++ G+ S+ L+ + G A+++F + + D+ + +I K
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 85 NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ 144
+L Y M N+SP T ++V+ +CA L L++G +H G S + V
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204
AL+ Y+K +D A +VF +P+K V++W S+I+G N EA+ F M +
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLK 486
Query: 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264
P+S T + L+ACA++G + G+ +H ++ G+ + L +L+++Y RCG ++ A
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546
Query: 265 FDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV 324
F+ E +V++W +++GY HG G+ AVELF+RM GV P+ VTF+++L AC+ +G+V
Sbjct: 547 FNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605
Query: 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAML 384
+G F SM ++Y + P ++H+ C+VDL GRAG L EAY F+ + P PAVW A+L
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK-MPITPDPAVWGALL 664
Query: 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444
AC++H++ +LG A+H+ ++P + G+Y++L N+YA AG+ D V VR M + GL
Sbjct: 665 NACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724
Query: 445 HVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE 504
G S VEV K + F D+SHP EI L+ + + +G S+M E+E +
Sbjct: 725 DPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSK 784
Query: 505 REYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL 564
+ HSE+LA+AFGL+ T PGM I + KNL MC +CH+ +KFIS REI VRD
Sbjct: 785 DDI-FCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTE 843
Query: 565 RFHHFKRGSCSCLD 578
+FHHFK G CSC D
Sbjct: 844 QFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 7e-68
Identities = 124/369 (33%), Positives = 205/369 (55%), Gaps = 14/369 (3%)
Query: 46 LLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPS 105
+LS+ G + +A +F +P D F +N L+ +KA + ++L Y RM+ + + P
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186
Query: 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD 165
YTF V+++C + L GR VH HV G++ D+ V AL+ Y K +V AR VFD
Sbjct: 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246
Query: 166 RMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225
RMP + ++WN+MISGY +NG E + LF MR+ V+PD T V++AC LGD L
Sbjct: 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306
Query: 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGM 285
GR +H ++V G V+V + SLI MY G+ +A ++F M + ++WTAMISGY
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366
Query: 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE 345
+G +A+E + M V P+ +T +VLSACA G + G ++ + + GL+ V
Sbjct: 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH-ELAERKGLISYVV 425
Query: 346 HHVCMVDLFGRAGLLNEA---YKFV--KDVIGEKPAPAVWTAML-GACKMHKNFDLGVEV 399
+++++ + +++A + + KDVI WT+++ G ++ F+ +
Sbjct: 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVIS-------WTSIIAGLRLNNRCFEALIFF 478
Query: 400 AEHLLSVEP 408
+ LL+++P
Sbjct: 479 RQMLLTLKP 487
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 8e-62
Identities = 128/401 (31%), Positives = 206/401 (51%), Gaps = 22/401 (5%)
Query: 19 PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78
P L ++VHAH++ G+ ++ L+++ G + A+ +F +P D +N +I
Sbjct: 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMI 260
Query: 79 IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD 138
+ + L + M ++ P T ++VI +C L LGR +H +V +G+
Sbjct: 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320
Query: 139 SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLM 198
D+ V +L+ Y + A KVF RM K V+W +MISGYE+NG +A+ + LM
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 199 RDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258
V+PD T VL+ACA LGD+D+G +HE +GL VV+A +LI MY++C +
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 259 SKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318
KA E+F + E +VI+WT++I+G ++ EA+ F +M ++PN+VT +A LSAC
Sbjct: 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSAC 499
Query: 319 AHAGLVQEGHRVFA-SMRQEYGL---LPGVEHHVCMVDLFGRAGLLNEAY-KF---VKDV 370
A G + G + A +R G LP ++DL+ R G +N A+ +F KDV
Sbjct: 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNA-----LLDLYVRCGRMNYAWNQFNSHEKDV 554
Query: 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411
W +L H + VE+ ++ NP
Sbjct: 555 -------VSWNILLTGYVAHGKGSMAVELFNRMVESG-VNP 587
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 7e-45
Identities = 89/317 (28%), Positives = 169/317 (53%), Gaps = 4/317 (1%)
Query: 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167
T+ A++++C L + +AV+ HV SG++ D ++ ++ + K + AR++FD M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR 227
P++++ +W ++I G G +EA LF M + G + + T V +L A A LG G+
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 228 WVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG 287
+H ++ G+ + ++ +LI+MY++CG++ AR +FD M E +AW +M++GY +HG
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347
Y EA+ L++ MR GV + TF ++ + L++ + A + + G + +
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVAN 363
Query: 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407
+VDL+ + G + +A + V D + K + W A++ H VE+ E +++ E
Sbjct: 364 TALVDLYSKWGRMEDA-RNVFDRMPRKNLIS-WNALIAGYGNHGRGTKAVEMFERMIA-E 420
Query: 408 PENPGHYVMLSNIYALA 424
P H L+ + A
Sbjct: 421 GVAPNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 8e-40
Identities = 108/360 (30%), Positives = 169/360 (46%), Gaps = 32/360 (8%)
Query: 102 ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVAR 161
+ + A+ + C + G V S + + A+++ + + + A
Sbjct: 82 VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAW 141
Query: 162 KVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221
VF +MP++ + +WN ++ GY + G+ EA+ L++ M GV PD T CVL C +
Sbjct: 142 YVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201
Query: 222 DIDLGRWVHEFIV--GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAM 279
D+ GR VH +V G LDV+VV A LI MY +CG+V AR +FD M + I+W AM
Sbjct: 202 DLARGREVHAHVVRFGFELDVDVVNA--LITMYVKCGDVVSARLVFDRMPRRDCISWNAM 259
Query: 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339
ISGY +G E +ELF MR V P+ +T +V+SAC L+ G Y
Sbjct: 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC---ELL--GDERLGREMHGYV 314
Query: 340 LLPG--VEHHVC--MVDLFGRAGLLNEAYKF-----VKDVIGEKPAPAVWTAMLGACKMH 390
+ G V+ VC ++ ++ G EA K KD + WTAM+ +
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS-------WTAMISGYE-- 365
Query: 391 KNF--DLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRNIMIQKGLKKHV 446
KN D +E L+ + +P + S + A A G +D + + +KGL +V
Sbjct: 366 KNGLPDKALETYA-LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 2e-24
Identities = 50/120 (41%), Positives = 65/120 (54%), Gaps = 19/120 (15%)
Query: 458 YLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEE------REYSLRY 511
GD SHP +EL R + G VPE++ H+++ EE + L
Sbjct: 9 KKTLSGDGSHP------TSKEELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLAS 62
Query: 512 HSEKLALAFGLMRTSPGMTIRIVKNL-RMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570
H+EK ALA+GL+ T RI+K L RMC DCH ++I+ T REIIVRD RFHHFK
Sbjct: 63 HAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 4e-17
Identities = 44/157 (28%), Positives = 72/157 (45%)
Query: 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235
NS + +G ++A+ L M++ V D V + C ++ G V +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL 295
+ V L ++++M+ R G + A +F M E ++ +W ++ GY GY EA+ L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332
+HRM GVRP+ TF VL C + G V A
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 4e-17
Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 23/261 (8%)
Query: 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248
KEA L+R NP +T +++ CA DID V + GL + L T+L
Sbjct: 423 KEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 249 INMYARCGNVSKAREIFDMMS----ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
I+ A+ G V E+F M E NV + A+I G G +A + MR+ V
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF------GRAG 358
+P+ V F A++SAC +G V V A M+ E P H+ + L G+
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH--PIDPDHITVGALMKACANAGQVD 596
Query: 359 LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SVEPENPGHYVM 416
E Y+ + + K P V+T + +C ++D + + + + V+P+ V
Sbjct: 597 RAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE----VF 651
Query: 417 LSNIYALAGRMDRVEVVRNIM 437
S + +AG ++ I+
Sbjct: 652 FSALVDVAGHAGDLDKAFEIL 672
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 1e-14
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 4/203 (1%)
Query: 189 KEAIGLFNLMR-DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247
+EA+ LF ++ ++T ++ AC L I + V+ + G + + +
Sbjct: 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163
Query: 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
++ M+ +CG + AR +FD M E N+ +W +I G G EA LF M G
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223
Query: 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367
TFV +L A A G + G ++ + + G++ ++D++ + G + +A + V
Sbjct: 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDA-RCV 281
Query: 368 KDVIGEKPAPAVWTAMLGACKMH 390
D + EK A W +ML +H
Sbjct: 282 FDGMPEKTTVA-WNSMLAGYALH 303
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 2e-14
Identities = 66/259 (25%), Positives = 120/259 (46%), Gaps = 44/259 (16%)
Query: 191 AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250
A+ + L+++ G+ D +++ CA+ G +D V +V G++ NV +LI+
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
Query: 251 MYARCGNVSKAREIFDMMSELNV----IAWTAMISGYGMHGYGTEAVELFHRMRA--HGV 304
AR G V+KA + +M NV + + A+IS G G A ++ M+A H +
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575
Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL--LPGVEH---HVC---------- 349
P+++T A++ ACA+AG V V+ + EY + P V + C
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIH-EYNIKGTPEVYTIAVNSCSQKGDWDFAL 634
Query: 350 --------------------MVDLFGRAGLLNEAYKFVKDV--IGEKPAPAVWTAMLGAC 387
+VD+ G AG L++A++ ++D G K +++++GAC
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
Query: 388 KMHKNFDLGVEVAEHLLSV 406
KN+ +E+ E + S+
Sbjct: 695 SNAKNWKKALELYEDIKSI 713
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 76/381 (19%), Positives = 156/381 (40%), Gaps = 52/381 (13%)
Query: 41 SMLTKLLSLVCDAGFITYAQRIFFCIPS----PDSFLFNTLIIRNSKANFSTDSLL-FYR 95
S L+S+ + I A R+ + D L+ TLI +K+ D++ +
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFH 496
Query: 96 RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155
M+ + + + +TF A+I CA RA Y +S
Sbjct: 497 EMVNAGVEANVHTFGALIDGCA--------RAGQVAKAFGAYG------------IMRSK 536
Query: 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-----VNPDSTTC 210
NV R VF N++IS Q+G A F+++ + ++PD T
Sbjct: 537 NVKPDRVVF-----------NALISACGQSGAVDRA---FDVLAEMKAETHPIDPDHITV 582
Query: 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE 270
++ ACA G +D + V++ I + + T +N ++ G+ A I+D M +
Sbjct: 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642
Query: 271 LNV----IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326
V + ++A++ G G +A E+ R G++ V++ +++ AC++A ++
Sbjct: 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV--IGEKPAPAVWTAML 384
++ ++ L P V ++ L +A + + ++ +G P ++ +L
Sbjct: 703 ALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
Query: 385 GACKMHKNFDLGVEVAEHLLS 405
A + + D+G+++
Sbjct: 762 VASERKDDADVGLDLLSQAKE 782
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-10
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320
+V+ + +I GY G EA++LF+ M+ G++PN T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219
VV +N++I GY + G +EA+ LFN M+ G+ P+ T ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 52/260 (20%), Positives = 100/260 (38%), Gaps = 10/260 (3%)
Query: 69 PDSFLFNTLI--IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGR 126
PD +FN LI S A +L + I P + T A++K+CA+ ++ +
Sbjct: 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
Query: 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV----VAWNSMISGY 182
V+ + V VN ++ + D A ++D M K V V +++++
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659
Query: 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV 242
G +A + R G+ + + ++ AC+ + ++E I L V
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719
Query: 243 VLATSLINMYARCGNVSKAREIFDMMSEL----NVIAWTAMISGYGMHGYGTEAVELFHR 298
+LI + KA E+ M L N I ++ ++ ++L +
Sbjct: 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779
Query: 299 MRAHGVRPNNVTFVAVLSAC 318
+ G++PN V + C
Sbjct: 780 AKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203
V +NS+ISGY + G +EA+ LF M++ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
+ + ++ISGY G EA+ELF M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307
+ + +I G G EA+ELF M+ G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 241 NVVLATSLINMYARCGNVSKAREIFDMMSEL----NVIAWTAMISGY 283
+VV +LI+ Y + G V +A ++F+ M + NV ++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207
V +N++I G + G +EA+ LF M++ G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 69 PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118
PD +NTLI K ++L + M I P+ YT+S +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 246 TSLINMYARCGNVSKAREIFDMMSELNV 273
SLI+ Y + G + +A E+F M E V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.002
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
+GL +VV +LI+ R G V +A E+ D M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 580 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.66 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.52 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.48 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.41 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.41 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.39 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.34 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.34 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.23 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.18 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.16 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.1 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.1 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.08 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.06 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.99 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.97 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.96 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.91 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.91 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.85 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.84 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.82 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.82 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.8 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.79 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.79 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.78 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.71 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.71 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.71 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.7 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.69 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.69 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.65 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.57 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.56 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.56 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.49 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.49 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.48 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.48 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.47 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.43 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.41 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.39 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.36 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.36 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.33 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.31 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.23 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.23 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.18 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.16 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.16 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.15 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.12 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.08 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.05 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.04 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.04 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.98 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.96 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.95 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.95 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.91 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.91 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.91 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.9 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.88 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.85 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.85 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.84 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.82 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.81 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.78 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.78 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.73 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.73 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.73 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.72 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.61 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.54 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.47 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.47 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.46 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.43 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.36 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.33 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.33 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.32 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.32 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.29 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.28 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.28 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.26 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.24 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.22 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.21 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.2 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.19 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.18 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.18 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.18 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.17 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.13 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.08 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.07 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.03 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.01 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.95 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.92 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.86 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.8 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.79 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.77 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.76 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.75 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.72 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.68 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.68 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.66 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.62 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.61 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.6 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.46 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.39 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.37 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.29 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.24 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.18 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.18 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.06 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.97 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.93 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.88 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.77 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.72 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.61 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.59 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.54 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.45 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.4 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.4 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.34 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.32 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.31 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.25 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.14 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.09 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.05 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.98 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.94 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.89 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.87 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.86 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.85 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.83 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.7 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.64 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.5 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.49 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.49 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.45 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.32 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.23 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.19 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.13 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.05 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.92 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.8 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.68 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.55 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.3 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.71 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.63 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.13 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.93 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.83 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.8 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.56 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.45 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.24 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.08 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.01 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.98 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.82 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.8 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.59 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.43 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.08 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 89.62 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.55 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.4 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.33 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.25 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.24 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.99 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.93 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.69 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.47 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.24 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.14 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.93 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.85 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.47 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.98 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 86.94 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.77 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.71 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.22 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.83 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.71 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 85.68 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 85.64 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.23 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.03 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.9 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.43 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.36 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.22 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.86 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 83.72 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 83.38 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.17 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.15 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.06 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.99 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.83 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.64 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.58 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.49 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.46 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.38 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.3 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.25 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.85 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 81.74 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.56 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 81.45 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.25 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.08 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-120 Score=983.28 Aligned_cols=577 Identities=38% Similarity=0.688 Sum_probs=569.2
Q ss_pred CCCCCHHHHHHHHhcCCC---CchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHHH
Q 046803 3 NKQPHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLII 79 (580)
Q Consensus 3 ~~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~ 79 (580)
++.||.+||+++|.+|+. .+.++++|..+.+.|+.||+.++|+|+..|++.|++++|.++|++|++||+++||++|.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 578999999999999964 47789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Q 046803 80 RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV 159 (580)
Q Consensus 80 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 159 (580)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+.|+.+|..++|+||++|+++|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 046803 160 ARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLD 239 (580)
Q Consensus 160 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 239 (580)
|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|..+.+.|++
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046803 240 VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319 (580)
Q Consensus 240 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 319 (580)
||..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEV 399 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 399 (580)
+.|++++|.++|+.|.+++|+.|+..+|++++++|++.|++++|.+++ +.++..|+..+|++|+.+|+.+|+++.|..+
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~-~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI-RRAPFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999999988899999999999999999999999999999 7789999999999999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHH
Q 046803 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDE 479 (580)
Q Consensus 400 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 479 (580)
++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+||+++++.+|.|++|+..||+.+++++.+.+
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 596 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccCCccccccccchhhhhhhcccccHHHHHHHhhccCCCCCeEEEEeccccCCcchhhhHHHhhhcCceEE
Q 046803 480 LMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREII 559 (580)
Q Consensus 480 l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~ 559 (580)
+..+|++.||.||+..++|++++++|+..+.+||||||++|||+++|+|.||||+||||+|+|||+|+|+||++++|+||
T Consensus 597 l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~ 676 (697)
T PLN03081 597 LMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIV 676 (697)
T ss_pred HHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccccccCccccCCCCC
Q 046803 560 VRDRLRFHHFKRGSCSCLDYW 580 (580)
Q Consensus 560 ~~d~~~~h~~~~g~csc~~~w 580 (580)
|||.+|||||+||+|||+|||
T Consensus 677 ~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 677 VRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EecCCccccCCCCcccccccC
Confidence 999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-115 Score=965.69 Aligned_cols=573 Identities=35% Similarity=0.642 Sum_probs=562.5
Q ss_pred CCCCCCHHHHHHHHhcCC---CCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHH
Q 046803 2 KNKQPHSPAYEAILKAGP---RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78 (580)
Q Consensus 2 ~~~~p~~~~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li 78 (580)
.|++||.+||+++|.+|+ +.+.++++|..+.+.|+.||+.++|+||..|++.|++++|.++|++|++||+++||+||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 489999999999999995 45889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Q 046803 79 IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158 (580)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 158 (580)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 046803 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238 (580)
Q Consensus 159 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 238 (580)
+|.++|++|.++|+++||++|.+|+++|+.++|+++|++|.. +++||..||++++.+|++.|+++.+.++|..+.+.|+
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999986 5999999999999999999999999999999999999
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
.++..++|+|+++|+++|++++|.++|+.+ ++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
++.|++++|.++|+.|.+++|+.|+..+|++++++|++.|++++|.+++ +.|+.+||..+|++|+.+|..+|+.+.|+.
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~-~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI-NKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999978899999999999999999999999999999 778999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHH
Q 046803 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLD 478 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 478 (580)
+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++++||+|||++++++|.|..|+.+||+.++|+..|+
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~ 758 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccCCccccccccchhhhhhhcccccHHHHHHHhhccCCCCCeEEEEeccccCCcchhhhHHHhhhcCceE
Q 046803 479 ELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREI 558 (580)
Q Consensus 479 ~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~ 558 (580)
+|..+|++.||.||+..+++ +++++|+..+++||||||++|||++||+|+||||+||||+|+|||+++|+||++.+|+|
T Consensus 759 ~l~~~~~~~g~~~~~~~~~~-~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i 837 (857)
T PLN03077 759 GFYEKMKASGLAGSESSSMD-EIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREI 837 (857)
T ss_pred HHHHHHHhCCcCCCcchhcc-ccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEE
Confidence 99999999999999998884 47889999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCccccccCccccCCC
Q 046803 559 IVRDRLRFHHFKRGSCSCLD 578 (580)
Q Consensus 559 ~~~d~~~~h~~~~g~csc~~ 578 (580)
||||.+|||||+||+|||+|
T Consensus 838 ~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 838 SVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EEecCCcceeCCCCcccCCC
Confidence 99999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-72 Score=622.01 Aligned_cols=564 Identities=25% Similarity=0.400 Sum_probs=496.5
Q ss_pred CCCCCCHHHHHHHHhcCCC---CchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHH
Q 046803 2 KNKQPHSPAYEAILKAGPR---LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI 78 (580)
Q Consensus 2 ~~~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li 78 (580)
.|+.|+..||.+++++|.. +..|.++|+.+.+.|..+++.++|+||..|++.|+++.|.++|++|++||+++||+||
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence 3688999999999999954 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Q 046803 79 IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158 (580)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 158 (580)
.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.++|..+++.|+.||..++|+||++|+++|+++
T Consensus 160 ~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 239 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 046803 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238 (580)
Q Consensus 159 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 238 (580)
+|.++|++|+++|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+
T Consensus 240 ~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
.||..+||+|+++|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
++.|++++|.++++.+.+. |+.|+..+|++|+++|+++|++++|.++| +.|. +||..+|++++.+|.+.|+.++|..
T Consensus 400 ~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf-~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVF-HNIP-EKDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred hccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHH-HhCC-CCCeeeHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999864 99999999999999999999999999999 5554 4788999999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECC---------------------E-
Q 046803 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQ---------------------K- 456 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~---------------------~- 456 (580)
+|++|.+.-++|..+|..++.+|++.|.++.+.+++..|.+.|+.++.......++. .
T Consensus 477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s 556 (857)
T PLN03077 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556 (857)
T ss_pred HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhh
Confidence 999998655556777777777777777777777777776666665443221111100 0
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCCccccccccchhhhhhhc---ccccHHHHHHHhhccCCCCCeEEE
Q 046803 457 NYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSL---RYHSEKLALAFGLMRTSPGMTIRI 533 (580)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~h~e~la~~~~~~~~~~~~~~~~ 533 (580)
...++.++..|++.+++.+ ++++|++.|+.||..++..-+..+.+.+.+ ....+.+.-.+|+.++..+.. ++
T Consensus 557 ~n~lI~~~~~~G~~~~A~~----lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~l 631 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVE----LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CV 631 (857)
T ss_pred HHHHHHHHHHcCCHHHHHH----HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HH
Confidence 0123456677888888877 677789999999999887666666554443 233444544688888776544 89
Q ss_pred EeccccCCcchhhhHHHhhhcCce------EEeeCCCccccccCcc
Q 046803 534 VKNLRMCVDCHSAIKFISVATNRE------IIVRDRLRFHHFKRGS 573 (580)
Q Consensus 534 ~~~l~~~~~~~~~~~~~s~~~~~~------~~~~d~~~~h~~~~g~ 573 (580)
++.+.++|+..+|.++|.+|+.++ .++..|+.+.+.+.|+
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 999999999999999999997432 2344555555554443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=525.95 Aligned_cols=439 Identities=19% Similarity=0.275 Sum_probs=409.3
Q ss_pred CCHHHHHHHHhcCC---CCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCC----CCChhhHHHHH
Q 046803 6 PHSPAYEAILKAGP---RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP----SPDSFLFNTLI 78 (580)
Q Consensus 6 p~~~~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~----~~~~~~~~~li 78 (580)
||.+||+.+|.+|. +.+.|.++|..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||.++||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999995 458899999999999999999999999999999999999999999998 58999999999
Q ss_pred HHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHhCCC
Q 046803 79 IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV--SGYDSDLHVQAALVNFYAKSNN 156 (580)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~ 156 (580)
.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|+++|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999987 6789999999999999999999
Q ss_pred HHHHHHHHccCCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 046803 157 VDVARKVFDRMPD----KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232 (580)
Q Consensus 157 ~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 232 (580)
+++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|..
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999976 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046803 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS----ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308 (580)
Q Consensus 233 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 308 (580)
|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999995 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH----HcC-------------------CHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG----RAG-------------------LLNEAYK 365 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~ 365 (580)
.||+.++.+|++.|++++|.++|..|.+. |+.||..+|++++.++. +++ ..++|..
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 99999999999999999999999999864 99999999999997643 222 2467999
Q ss_pred HHHhHc--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 366 FVKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSV-EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 366 ~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
+|++|. ++.||..+|+.++.++...+..+.+..+++.+... .+++..+|..|++++.+. .++|..++++|.+.|+
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 997776 88899999999998888888888888888877543 356788999999988432 3689999999999999
Q ss_pred ccCCc
Q 046803 443 KKHVG 447 (580)
Q Consensus 443 ~~~~~ 447 (580)
.|+..
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 98765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-61 Score=520.35 Aligned_cols=523 Identities=17% Similarity=0.237 Sum_probs=411.6
Q ss_pred CHHHHHHHHhcC---CCCchHHHHHHHHHHhCC-CCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHHHHHH
Q 046803 7 HSPAYEAILKAG---PRLKPLQQVHAHLIVAGY-GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNS 82 (580)
Q Consensus 7 ~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~ 82 (580)
+...|..++..| ++++.+.++++.|.+.|+ .++...++.++..|.+.+.+++|.++|+.|+.||..+||.+|.+|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 444444444444 677888889998888885 4577777888888888888999999999998899999999999999
Q ss_pred cCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 046803 83 KANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162 (580)
Q Consensus 83 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 162 (580)
+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999998899999999999999999999999999999999988888899999999999999999999999
Q ss_pred HHccCCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 046803 163 VFDRMPD----KSVVAWNSMISGYEQNGFAKEAIGLFNLMRD--FGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236 (580)
Q Consensus 163 ~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 236 (580)
+|++|.+ ||..+||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9988853 7888999999999999999999999999876 578889999999999999999999999999999998
Q ss_pred CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046803 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV 312 (580)
Q Consensus 237 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 312 (580)
|++|+..+||++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8889999999999999999999999999988874 788899999999999999999999999999888999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc--CCCCCHHHHHHHHHHHHhc
Q 046803 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI--GEKPAPAVWTAMLGACKMH 390 (580)
Q Consensus 313 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~ll~~~~~~ 390 (580)
.++.+|++.|++++|.++|++|.+ .|+.|+..+|+.||.+|++.|++++|.++|++|. +..||..+|++++.+|.+.
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999998875 4888999999999999999999999999996554 6788999999999999999
Q ss_pred CCchHHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCC
Q 046803 391 KNFDLGVEVAEHLLSVE-PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469 (580)
Q Consensus 391 g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 469 (580)
|++++|.+++++|.+.+ .+|..+|..|+.+|. ++++++.++.+.+..-+. +.. ......
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----g~~--------------~~~n~w 827 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----GRP--------------QIENKW 827 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----ccc--------------ccccch
Confidence 99999999999988766 335677888876654 245555555444332110 000 000112
Q ss_pred hHHHHHHHHHHHHHHHHcCccCCccccccccchhhhhhhcccccHHHHHHHhhccCCCCCe--EEEEeccccCCc-chhh
Q 046803 470 TNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMT--IRIVKNLRMCVD-CHSA 546 (580)
Q Consensus 470 ~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~ 546 (580)
..++. .++++|.+.|+.||..++...+ .+..........+.+--.+++.+.+++.. ..+++.+ +. -++|
T Consensus 828 ~~~Al----~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A 899 (1060)
T PLN03218 828 TSWAL----MVYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRA 899 (1060)
T ss_pred HHHHH----HHHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHH
Confidence 23344 3788899999999987765544 22211111122333444567666666532 3455543 22 2579
Q ss_pred hHHHhhhcCceE
Q 046803 547 IKFISVATNREI 558 (580)
Q Consensus 547 ~~~~s~~~~~~~ 558 (580)
..++..|..+.|
T Consensus 900 ~~l~~em~~~Gi 911 (1060)
T PLN03218 900 FSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHHHcCC
Confidence 999988886654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-60 Score=512.03 Aligned_cols=489 Identities=20% Similarity=0.339 Sum_probs=427.7
Q ss_pred CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 046803 68 SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSN-ISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146 (580)
Q Consensus 68 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 146 (580)
.++.++|+.+|.++.+.|++++|+++|++|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHH
Q 046803 147 LVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226 (580)
Q Consensus 147 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 226 (580)
|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 046803 227 RWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306 (580)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 306 (580)
.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHH
Q 046803 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGA 386 (580)
Q Consensus 307 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~ 386 (580)
|..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++|+++|+++|++++|.++|++ |. +||..+|++|+.+
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~-m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDR-MP-RKNLISWNALIAG 400 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHh-CC-CCCeeeHHHHHHH
Confidence 9999999999999999999999999999865 9999999999999999999999999999954 43 4899999999999
Q ss_pred HHhcCCchHHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-CCCccCCceeEEEECCEEEEEeeCC
Q 046803 387 CKMHKNFDLGVEVAEHLLSVE-PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ-KGLKKHVGYSTVEVDQKNYLFSMGD 464 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~~ 464 (580)
|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+...+.. ++.+.
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~--------li~~l 472 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC--------MIELL 472 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh--------HHHHH
Confidence 999999999999999999866 44688999999999999999999999999986 588876644433 33445
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCccCCccccccccchhhhhhhcccccHHHHHHHhhccCCCCCeEEEEeccccCCcch
Q 046803 465 KSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEEREYSLRYHSEKLALAFGLMRTSPGMTIRIVKNLRMCVDCH 544 (580)
Q Consensus 465 ~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (580)
...+..+++++.+ ++.++.|+..++-.-+..+.+.+.+-.-.+-....+++.+...+..+.+++.+..+|+..
T Consensus 473 ~r~G~~~eA~~~~-------~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 473 GREGLLDEAYAMI-------RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HhcCCHHHHHHHH-------HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 5678888887643 356888988664433333332222110000111124555554556777888899999999
Q ss_pred hhhHHHhhhcCceEEee-------CCCccccccCccc
Q 046803 545 SAIKFISVATNREIIVR-------DRLRFHHFKRGSC 574 (580)
Q Consensus 545 ~~~~~~s~~~~~~~~~~-------d~~~~h~~~~g~c 574 (580)
+|.+++..|..+.+-.. -.+..|.|-.|-.
T Consensus 546 ~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 546 EAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 99999999998764322 2345577765543
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=213.85 Aligned_cols=106 Identities=62% Similarity=1.011 Sum_probs=97.0
Q ss_pred ceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCCccccccccchhhh--------hhhcccccHHHHH
Q 046803 447 GYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEEEER--------EYSLRYHSEKLAL 518 (580)
Q Consensus 447 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~h~e~la~ 518 (580)
|++|+++ |.|++|+.+||+. ++..++...||.|++..+.|+++++++ +..++.||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6889776 9999999999998 356667889999999999998888766 5688999999999
Q ss_pred HHhhccCCCCCeEEEEecc-ccCCcchhhhHHHhhhcCceEEeeCCCcccccc
Q 046803 519 AFGLMRTSPGMTIRIVKNL-RMCVDCHSAIKFISVATNREIIVRDRLRFHHFK 570 (580)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 570 (580)
+|||+++ +|+||+ |+|+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-26 Score=259.97 Aligned_cols=395 Identities=12% Similarity=0.087 Sum_probs=286.2
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIP---SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 115 (580)
++.+++.+...+...+++++|.+.|+++. +.+...+..+...+...|++++|.+.|+++...+ +.+..++..+...
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 542 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGL 542 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 44555555556666666666666666543 2344455566666666666666666666665543 2244555666666
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHH
Q 046803 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAI 192 (580)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 192 (580)
+...|+.++|...+.++.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666667777777766666554 34455666677777777777777777766643 35567777777777777777777
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--
Q 046803 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-- 270 (580)
Q Consensus 193 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 270 (580)
..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.+
T Consensus 622 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 622 SSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777776642 3345566677777777777777777777777654 55567777777777788888888887777764
Q ss_pred -CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 046803 271 -LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVC 349 (580)
Q Consensus 271 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 349 (580)
.+...|..+...+...|++++|+..|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~ 775 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTA 775 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 35566777778888888888888888888774 455567777888888888888888888888753 3446778888
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 428 (580)
+...|...|++++|.+.|++++...| ++.+++.+...+...|+ ++|+..++++++..|+++..+..++.+|...|+++
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 88888889999999999987777666 47778888888888888 78999999999888988888888999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 046803 429 RVEVVRNIMIQKGL 442 (580)
Q Consensus 429 ~a~~~~~~m~~~~~ 442 (580)
+|.++++++.+.+.
T Consensus 855 ~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 855 RALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999887654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-26 Score=257.69 Aligned_cols=414 Identities=9% Similarity=0.012 Sum_probs=362.4
Q ss_pred cCCCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHH
Q 046803 17 AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLF 93 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 93 (580)
..++.+.+...+..+++.. ..+...+..+...+...+++++|.+.|+.+.+ .+..+++.+...+.+.|++++|..+
T Consensus 477 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred hCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3356677888888887654 23456677777788899999999999998753 5678899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---C
Q 046803 94 YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---K 170 (580)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~ 170 (580)
|+++...+ +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...|+++.+ .
T Consensus 556 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 633 (899)
T TIGR02917 556 LEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633 (899)
T ss_pred HHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99998764 3356677888899999999999999999998764 56788999999999999999999999998754 3
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhh
Q 046803 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250 (580)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 250 (580)
+...|..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 66789999999999999999999999998753 4457789999999999999999999999999886 667888999999
Q ss_pred HhhhcCCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046803 251 MYARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 328 (580)
.|.+.|++++|.+.|+.+.+ |+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999998864 666788889999999999999999999998853 446778888899999999999999
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
++|+++.+. .+++...+..+...+...|+ ++|++.+++.+...|+ +.++..+...+...|++++|...++++++.+
T Consensus 791 ~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 791 KHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999863 34568889999999999999 8899999988888874 7788899999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 408 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 868 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 868 PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=196.25 Aligned_cols=359 Identities=15% Similarity=0.191 Sum_probs=314.5
Q ss_pred hhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchH-HHHHHH
Q 046803 71 SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP-SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLH-VQAALV 148 (580)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li 148 (580)
..+|..+.+.+-..|++++|+.+++.|++. +| ....|..+..++...|+.+.|.+.|.+.++.. |+.. ..+.+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 457888999999999999999999999985 44 56679999999999999999999999998864 4433 344566
Q ss_pred HHHHhCCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhCCChH
Q 046803 149 NFYAKSNNVDVARKVFDRMPD--KS-VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS-TTCVCVLAACAQLGDID 224 (580)
Q Consensus 149 ~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~ 224 (580)
+..-..|++.+|...+.+..+ |. .+.|+.|...+..+|+...|+..|++... +.|+- ..|..+...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcch
Confidence 667778999999998887654 32 47899999999999999999999999987 46664 48999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--LN-VIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
.|...+....... +....++..+...|..+|.++-|+..+++..+ |+ ..+|+.|..++-..|+..+|...|.+.+.
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999998888764 55678888999999999999999999999875 44 56999999999999999999999999988
Q ss_pred CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HH
Q 046803 302 HGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PA 378 (580)
Q Consensus 302 ~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 378 (580)
+.|+. ...+.|..++...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+..|++++.++|+ ..
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 45554 578899999999999999999999886 44565 677889999999999999999999999999998 78
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 379 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
.++.+...|...|+.+.|++.+.+++..+|.-..+...|+.+|-..|+..+|.+-++...+..
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 899999999999999999999999999999999999999999999999999999999987754
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=194.45 Aligned_cols=378 Identities=12% Similarity=0.100 Sum_probs=324.6
Q ss_pred hhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHH-HH
Q 046803 42 MLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS-CA 117 (580)
Q Consensus 42 ~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~ 117 (580)
.|+.+-+.+-..|++++|+..++.+.+ ..+..|-.+..++...|+.+.|.++|.+.++ +.|+.....+-+.- .-
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH
Confidence 444455555577799999999998764 4677999999999999999999999999887 56766554333322 33
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhCCChhHHHHH
Q 046803 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKS---VVAWNSMISGYEQNGFAKEAIGL 194 (580)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 194 (580)
..|++++|..-|.++++.. +.-...|+.|...+-..|++..|+..|++...-| ..+|-.|...|-..+.+++|+..
T Consensus 196 a~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 4689999999999988764 2235678899999999999999999999987643 46899999999999999999999
Q ss_pred HHHHHHCCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C
Q 046803 195 FNLMRDFGVNPD-STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L 271 (580)
Q Consensus 195 ~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~ 271 (580)
|.+.... .|+ .+.+..+...|...|.++.|...+++.++.. +.-...|+.|..++-..|++.+|.+.+++... |
T Consensus 275 Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 275 YLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 9998864 565 5688888888999999999999999999875 45578999999999999999999999998875 3
Q ss_pred -ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHH
Q 046803 272 -NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHV 348 (580)
Q Consensus 272 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 348 (580)
-..+.+.|...|...|.+++|..+|....+ +.|.. ..++.|...|-+.|++++|...|++.. .++|+ ...|+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~ 426 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALS 426 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHH
Confidence 456889999999999999999999999887 56665 578899999999999999999999987 78887 78999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 427 (580)
.+...|-..|+.+.|.+.+.+++.+.|. ...++.|...|...|+..+|+..|+.++++.|+.|.+|-.++.+..--.+|
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 9999999999999999999999999996 788999999999999999999999999999999999999998887666666
Q ss_pred hHH
Q 046803 428 DRV 430 (580)
Q Consensus 428 ~~a 430 (580)
.+-
T Consensus 507 ~D~ 509 (966)
T KOG4626|consen 507 TDY 509 (966)
T ss_pred cch
Confidence 553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-19 Score=192.59 Aligned_cols=358 Identities=11% Similarity=0.004 Sum_probs=261.3
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 046803 75 NTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154 (580)
Q Consensus 75 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 154 (580)
......+.+.|++++|+..|++.+. ..|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 3444555566666666666666554 34455555555556666666666666666665543 22344555566666666
Q ss_pred CCHHHHHHHHccCC---------------------------------CCChhHHHHHHH---------------------
Q 046803 155 NNVDVARKVFDRMP---------------------------------DKSVVAWNSMIS--------------------- 180 (580)
Q Consensus 155 g~~~~A~~~f~~~~---------------------------------~~~~~~~~~li~--------------------- 180 (580)
|++++|...|.... ..+..++..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 66666654332210 001011111100
Q ss_pred ---------HH------HhCCChhHHHHHHHHHHHCC-CCC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH
Q 046803 181 ---------GY------EQNGFAKEAIGLFNLMRDFG-VNP-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVV 243 (580)
Q Consensus 181 ---------~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 243 (580)
.+ ...+++++|++.|++..+.+ ..| +...+..+...+...|++++|...+...++.. +.+..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 00 12357889999999998764 234 34567778888889999999999999999875 44567
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACA 319 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~ 319 (580)
.+..+..+|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHH
Confidence 888999999999999999999998764 45788999999999999999999999999884 454 566777888899
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCH-HH-------HHHHHHHHHhcC
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP-AV-------WTAMLGACKMHK 391 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~-------~~~ll~~~~~~g 391 (580)
+.|++++|...|+...+. .+.+...++.+..++...|++++|++.|++++...|+. .+ ++..+..+...|
T Consensus 445 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 999999999999998753 23357888899999999999999999998888776641 11 222223344569
Q ss_pred CchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
++++|+.+++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=189.94 Aligned_cols=292 Identities=13% Similarity=0.119 Sum_probs=199.0
Q ss_pred HHhCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhCCChH
Q 046803 151 YAKSNNVDVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD---STTCVCVLAACAQLGDID 224 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~ 224 (580)
+...|++++|...|+++.+. +..+|..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44555566666666555431 334555666666666666666666666655321111 134455566666666666
Q ss_pred HHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC--------hHHHHHHHHHHHhcCChHHHHHHH
Q 046803 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN--------VIAWTAMISGYGMHGYGTEAVELF 296 (580)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~ 296 (580)
+|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666666543 3455566666666666666666666666664311 123455667777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC
Q 046803 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374 (580)
Q Consensus 297 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 374 (580)
+++.+.. +.+...+..+...+.+.|++++|.++|+++.+. .|+ ...++.++.+|.+.|++++|.+.++++....
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887642 223456667777888888888888888888743 233 4567788888999999999999997777777
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh---cCChhHHHHHHHHHHhCCCccCCce
Q 046803 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL---AGRMDRVEVVRNIMIQKGLKKHVGY 448 (580)
Q Consensus 375 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 448 (580)
|+...+..++..+.+.|++++|...++++++..|+++ .+..+...+.. .|+.+++..++++|.++++.++|.+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 8777778888888999999999999999988888765 45555555543 5689999999999999888888863
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-18 Score=198.25 Aligned_cols=377 Identities=10% Similarity=0.001 Sum_probs=251.1
Q ss_pred ccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCC-ChhhHH------------HHHHH
Q 046803 52 DAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP-SNYTFS------------AVIKS 115 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~------------~ll~a 115 (580)
..+++++|...|++..+ .+...+..+...|.+.|++++|+..|++..+..... +...+. .....
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 55566666666654432 244555555556666666666666666555432111 100010 11223
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhH------------------
Q 046803 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVA------------------ 174 (580)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~------------------ 174 (580)
+.+.|++++|...++++++.. +.+...+..+..+|...|++++|++.|++..+ | +...
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 345556666666666555543 23344455555556666666666655555432 1 1222
Q ss_pred ------------------------HHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhCCChHHHHHH
Q 046803 175 ------------------------WNSMISGYEQNGFAKEAIGLFNLMRDFGVNP-DSTTCVCVLAACAQLGDIDLGRWV 229 (580)
Q Consensus 175 ------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~ 229 (580)
+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++|...
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 223444556678888888888887764 34 345666777778888888888888
Q ss_pred HHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCC----Ch---------HHHHHHHHHHHhcCChHHHHHHH
Q 046803 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL----NV---------IAWTAMISGYGMHGYGTEAVELF 296 (580)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~ 296 (580)
++.+.+.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+.++|+.++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 88877654 345555555555667778888888888776531 11 11224456678888899998887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 297 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
+. .+++...+..+...+.+.|+.++|...|+.+.+. -+.+...+..++.+|...|++++|++.++..+...|+
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 72 2344556677888899999999999999999853 2235788889999999999999999999877777774
Q ss_pred -HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc------hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 377 -PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG------HYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 377 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..++..+..++...|++++|.+.++++++..|+++. .+..++.++...|++++|.+.+++...
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677888888999999999999999999988765543 566678999999999999999998754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-19 Score=203.05 Aligned_cols=437 Identities=10% Similarity=0.035 Sum_probs=294.1
Q ss_pred hhhhchHHHHHhccCChhHHHHHHccCC----CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046803 40 RSMLTKLLSLVCDAGFITYAQRIFFCIP----SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115 (580)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 115 (580)
...+...+..+-....++.|...++... .|+... ......+...|++++|+..|++.++... .+...+..+..+
T Consensus 235 ~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~ 312 (1157)
T PRK11447 235 VAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQA 312 (1157)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4456666644433335667777776533 233221 2345667889999999999999988532 266778888899
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCch-H------------HHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHH
Q 046803 116 CAHLSILNLGRAVHCHVFVSGYDSDL-H------------VQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMI 179 (580)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~g~~~~~-~------------~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li 179 (580)
+.+.|++++|...++++++....... . ....+...+.+.|++++|+..|++..+ .+...+..+.
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg 392 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLG 392 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999987543221 1 112346678899999999999998865 3566888899
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHH-----------------------------------------
Q 046803 180 SGYEQNGFAKEAIGLFNLMRDFGVNPD-STTCVCVLAAC----------------------------------------- 217 (580)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~----------------------------------------- 217 (580)
..+...|++++|++.|++..+. .|+ ...+..+...+
T Consensus 393 ~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~ 470 (1157)
T PRK11447 393 DVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA 470 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999875 343 33443333333
Q ss_pred -HhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHH
Q 046803 218 -AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAV 293 (580)
Q Consensus 218 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 293 (580)
...|++++|.+.+++.++.. +.+..++..+...|.+.|++++|...|+++.+ .+...+..+...+...++.++|+
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 34456666666666665553 33455555566666666666666666665532 23334444444455566666666
Q ss_pred HHHHHHHhCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 046803 294 ELFHRMRAHGVRPNNV---------TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 294 ~~~~~m~~~g~~pd~~---------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 364 (580)
..++++......++.. .+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|+
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 6665543321111111 122344556677777777777651 1235566778999999999999999
Q ss_pred HHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 365 KFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 365 ~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
+.|++.+...|+ +..+..++..+...|++++|++.++++.+..|+++..+..++.++...|++++|.++++++......
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 999989988884 8889999999999999999999999999999999999999999999999999999999999875432
Q ss_pred cCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCCc
Q 046803 444 KHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPES 493 (580)
Q Consensus 444 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 493 (580)
..+......+- .....-....++.+++...+++. |...|+.|..
T Consensus 704 ~~~~~~~a~~~---~~~a~~~~~~G~~~~A~~~y~~A---l~~~~~~~~~ 747 (1157)
T PRK11447 704 QPPSMESALVL---RDAARFEAQTGQPQQALETYKDA---MVASGITPTR 747 (1157)
T ss_pred CCcchhhHHHH---HHHHHHHHHcCCHHHHHHHHHHH---HhhcCCCCCC
Confidence 22211000000 00001123456667776666655 4455666543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-19 Score=181.26 Aligned_cols=282 Identities=15% Similarity=0.140 Sum_probs=187.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCC-C------hhHHHHHHHHHHhCCChhHH
Q 046803 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-S------VVAWNSMISGYEQNGFAKEA 191 (580)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~------~~~~~~li~~~~~~g~~~~A 191 (580)
.|++++|...+.++++.+ +.+..++..+...|...|++++|..+++.+... + ...+..++..|.+.|++++|
T Consensus 48 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred cCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344444444444444432 122334444444444444444444444443321 0 12345555555555555555
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc----HHHhhHHhhHhhhcCCHHHHHHHHHh
Q 046803 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN----VVLATSLINMYARCGNVSKAREIFDM 267 (580)
Q Consensus 192 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~ 267 (580)
+.+|+++.+.. +++..++..++..+...|++++|.+.+..+.+.+..+. ...+..+...|.+.|++++|.+.|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555555431 23344555555555566666666666655555432211 12345566777788888888888887
Q ss_pred ccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH
Q 046803 268 MSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344 (580)
Q Consensus 268 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 344 (580)
+.+ .+...+..+...|.+.|++++|.++|+++.+.+..+...++..+..+|...|++++|...++.+.+. .|+.
T Consensus 206 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~ 282 (389)
T PRK11788 206 ALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGA 282 (389)
T ss_pred HHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCc
Confidence 764 2355777888899999999999999999987533222456788889999999999999999998753 4676
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHh
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM---HKNFDLGVEVAEHLLS 405 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 405 (580)
..+..++..+.+.|++++|..++++++...|+...++.++..+.. .|+.+++...++++++
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 677889999999999999999998888889998889888877664 5689999999998885
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-18 Score=182.64 Aligned_cols=367 Identities=9% Similarity=-0.047 Sum_probs=287.7
Q ss_pred ccCChhHHHHHHccCCC------CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHH
Q 046803 52 DAGFITYAQRIFFCIPS------PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 125 (580)
+..+++.---.|..-++ .+..-.-.++..+.+.|++++|+.+++..+.....+ ...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 66667666666766654 122334456778889999999999999998864443 34455555667779999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046803 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202 (580)
Q Consensus 126 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 202 (580)
...++.+++.. +.+...+..+...+...|++++|...|++... | +...|..+...+...|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999999875 45677888899999999999999999998765 3 56789999999999999999999999887653
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHH
Q 046803 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAM 279 (580)
Q Consensus 203 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 279 (580)
|+.......+..+...|++++|...+..+++....++......+...+.+.|++++|...|++..+ .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 333322222345788999999999999988775334455556667889999999999999998764 456788889
Q ss_pred HHHHHhcCChHH----HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH
Q 046803 280 ISGYGMHGYGTE----AVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDL 353 (580)
Q Consensus 280 i~~~~~~g~~~~----A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 353 (580)
...|.+.|++++ |+..|++..+. .|+ ...+..+...+...|++++|...+++..+. .| +...+..+..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 999999999986 89999999884 454 467888888999999999999999998753 45 46677778999
Q ss_pred HHHcCCHHHHHHHHHhHcCCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 046803 354 FGRAGLLNEAYKFVKDVIGEKPAPAV-WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 432 (580)
|.+.|++++|.+.+++.+...|+... +..+..++...|+.++|+..|+++++..|++. ...+++|..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 99999999999999888878886433 44467788999999999999999999998864 234455665
Q ss_pred HHHHHHh
Q 046803 433 VRNIMIQ 439 (580)
Q Consensus 433 ~~~~m~~ 439 (580)
.+.+..+
T Consensus 396 ~~~~~~~ 402 (656)
T PRK15174 396 ALDGQIS 402 (656)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-18 Score=180.04 Aligned_cols=326 Identities=11% Similarity=0.019 Sum_probs=270.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHh
Q 046803 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQ 184 (580)
Q Consensus 108 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~ 184 (580)
....++..+.+.|+++.|..++..++.....+ ......++......|++++|...|+++.. | +...|..+...+.+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 35566778889999999999999999886544 44455555667789999999999999865 3 56789999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHH
Q 046803 185 NGFAKEAIGLFNLMRDFGVNP-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263 (580)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 263 (580)
.|++++|+..|++..+. .| +...+..+..++...|++++|...+..+.... +.+...+..+. .+...|++++|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~~-~l~~~g~~~eA~~ 198 (656)
T PRK15174 123 SKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATCL-SFLNKSRLPEDHD 198 (656)
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHcCCHHHHHH
Confidence 99999999999999875 44 45678888999999999999999999887765 33344443343 4788999999999
Q ss_pred HHHhccCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhH
Q 046803 264 IFDMMSEL----NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE----GHRVFASMR 335 (580)
Q Consensus 264 ~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~----a~~~~~~~~ 335 (580)
.++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++ |...|+++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99987653 23344556778899999999999999999853 2245667778889999999986 899999987
Q ss_pred HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 336 QEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 336 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
+ ..| +...+..+...+.+.|++++|...+++.+...|+ ...+..+..++...|++++|+..++++.+.+|+++..
T Consensus 278 ~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 278 Q---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred h---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 4 345 5778899999999999999999999999988885 7778889999999999999999999999999998877
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 414 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
+..++.++...|++++|.+.+++..+...
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 77788999999999999999999877643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-17 Score=180.69 Aligned_cols=396 Identities=8% Similarity=0.013 Sum_probs=296.7
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCC-ChhhHHHHHH
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP-SNYTFSAVIK 114 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 114 (580)
++....-.+....-.|+.++|++++..... .+...+..+...+...|++++|+.+|++.+.. .| +...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 334444455566678899999999987653 44556899999999999999999999998875 34 3455667777
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHH
Q 046803 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEA 191 (580)
Q Consensus 115 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A 191 (580)
.+...|++++|...++++++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 7889999999999999998874 44555 88889999999999999999998865 3 556777788888899999999
Q ss_pred HHHHHHHHHCCCCCChh------HHHHHHHHHHhC-----CCh---HHHHHHHHHHHHc-CCCCcHH-Hh-hH---HhhH
Q 046803 192 IGLFNLMRDFGVNPDST------TCVCVLAACAQL-----GDI---DLGRWVHEFIVGQ-GLDVNVV-LA-TS---LINM 251 (580)
Q Consensus 192 ~~~~~~m~~~g~~p~~~------t~~~ll~a~~~~-----~~~---~~a~~~~~~~~~~-~~~~~~~-~~-~~---li~~ 251 (580)
++.+++... .|+.. ....++...... +.+ ++|.+.++.+.+. ...|+.. .+ .. .+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 998887653 33320 111222222111 223 6678888888754 2222221 11 11 1234
Q ss_pred hhhcCCHHHHHHHHHhccCCC---h-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCH
Q 046803 252 YARCGNVSKAREIFDMMSELN---V-IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP---NNVTFVAVLSACAHAGLV 324 (580)
Q Consensus 252 y~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~ 324 (580)
+...|++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+++.+..... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 457799999999999988632 1 122225778999999999999999987643211 124456667788999999
Q ss_pred HHHHHHHHHhHHhcC----------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc
Q 046803 325 QEGHRVFASMRQEYG----------LLPG---VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH 390 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~ 390 (580)
++|.++++.+..... -.|+ ...+..+..++...|++++|++.+++.+...| +...+..+...+...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999875311 1122 23456678889999999999999988888888 478899999999999
Q ss_pred CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 391 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
|++++|++.++++++++|+++..+..++..+...|++++|.++++.+.+..
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-17 Score=176.13 Aligned_cols=352 Identities=10% Similarity=0.016 Sum_probs=273.5
Q ss_pred HHhccCChhHHHHHHccCC--CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCChHHH
Q 046803 49 LVCDAGFITYAQRIFFCIP--SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP-SNYTFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 49 ~~~~~~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a 125 (580)
.+.+.++++.|.+.|+... .|+...|..+..+|.+.|++++|++.++..++. .| +...+..+..++...|++++|
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3347789999999998754 377788888889999999999999999998875 34 445677788888899999888
Q ss_pred HHHHHHHHHhCC-----------------------------CCchHHHHHH-----------------------------
Q 046803 126 RAVHCHVFVSGY-----------------------------DSDLHVQAAL----------------------------- 147 (580)
Q Consensus 126 ~~~~~~~~~~g~-----------------------------~~~~~~~~~l----------------------------- 147 (580)
..-+..+...+. +++...+..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccc
Confidence 765544322210 0000000000
Q ss_pred -HHHH------HhCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHH
Q 046803 148 -VNFY------AKSNNVDVARKVFDRMPDK------SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD-STTCVCV 213 (580)
Q Consensus 148 -i~~y------~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 213 (580)
+..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++..+. .|+ ...|..+
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~l 371 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKR 371 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 1111 1235788999999877542 4467888999999999999999999999875 455 5588888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChH
Q 046803 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGT 290 (580)
Q Consensus 214 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 290 (580)
...+...|++++|...+..+++.. +.+..++..+..+|...|++++|...|++..+ .+...|..+...+.+.|+++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH
Confidence 899999999999999999998875 66788999999999999999999999998874 35677888899999999999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--H------HHHHHHHHHHHHcCCHH
Q 046803 291 EAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--V------EHHVCMVDLFGRAGLLN 361 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~------~~~~~li~~~~~~g~~~ 361 (580)
+|+..|++..+. .|+ ...+..+..++...|++++|...|+...+. .|+ . ..++.....+...|+++
T Consensus 451 eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 451 SSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 999999999874 444 577888889999999999999999998742 332 1 11222223344579999
Q ss_pred HHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 362 EAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 362 ~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
+|.+++++.+...|+ ...+..+...+...|++++|+..|+++.++.+..
T Consensus 526 eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 526 EAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 999999888888886 5678999999999999999999999999987653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-16 Score=171.44 Aligned_cols=396 Identities=9% Similarity=-0.021 Sum_probs=300.2
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccC---CCCChhhHHHHHHHHHcCCCc
Q 046803 11 YEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI---PSPDSFLFNTLIIRNSKANFS 87 (580)
Q Consensus 11 ~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~ 87 (580)
|+.+..--++.+.+.+++....... ..+...+..+...+.+.+++++|.++|+.. .+.+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 5556656677777777777776522 233445777777788999999999999984 344677788899999999999
Q ss_pred cHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccC
Q 046803 88 TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167 (580)
Q Consensus 88 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 167 (580)
++|+..+++..+. .|+...+..+..++...|+.++|...++++++.. +.+...+..+..++...|..+.|.+.++..
T Consensus 100 ~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 9999999999876 3433337777788889999999999999999986 345666677888999999999999999987
Q ss_pred CCCChh--------HHHHHHHHHH-----hCCCh---hHHHHHHHHHHHC-CCCCChh-HHH----HHHHHHHhCCChHH
Q 046803 168 PDKSVV--------AWNSMISGYE-----QNGFA---KEAIGLFNLMRDF-GVNPDST-TCV----CVLAACAQLGDIDL 225 (580)
Q Consensus 168 ~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~ 225 (580)
.. +.. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|++++
T Consensus 177 ~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 177 NL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred CC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 76 211 2222233222 22234 7789999998864 2233322 111 11345567799999
Q ss_pred HHHHHHHHHHcCCC-CcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC-------hHHHHHHHHHHHhcCChHHHHHHHH
Q 046803 226 GRWVHEFIVGQGLD-VNVVLATSLINMYARCGNVSKAREIFDMMSELN-------VIAWTAMISGYGMHGYGTEAVELFH 297 (580)
Q Consensus 226 a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~ 297 (580)
|+..|+.+.+.+.+ |+ .....+...|...|++++|+..|+++.+.+ ...+..+..++...|++++|..+++
T Consensus 256 A~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 256 VISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999999987632 22 222335778999999999999999876422 2346667778899999999999999
Q ss_pred HHHhCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046803 298 RMRAHGV-----------RPNN---VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 298 ~m~~~g~-----------~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 363 (580)
++..... .|+. ..+..+...+...|+.++|.+.++++... .+.+...+..+..++...|++++|
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 9987421 2332 24456677888999999999999999753 334578889999999999999999
Q ss_pred HHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 364 YKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 364 ~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
++.+++++...|+ ...+..++..+...|++++|+.+++++++..|+++.+.
T Consensus 413 ~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 413 ENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999996 67788888899999999999999999999999987543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-16 Score=168.81 Aligned_cols=421 Identities=11% Similarity=0.029 Sum_probs=273.7
Q ss_pred CCCHHHHHHHHhcCCCCchHHHHHHHHHHhCCCCChhhhchHHHH--------HhccCChhHHHHHHccCCCC--ChhhH
Q 046803 5 QPHSPAYEAILKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--------VCDAGFITYAQRIFFCIPSP--DSFLF 74 (580)
Q Consensus 5 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~--------~~~~~~~~~A~~~f~~~~~~--~~~~~ 74 (580)
.|+...|..+|......+.+..++..+++.... +..++..+... |.+......|++ .+...| +....
T Consensus 108 dP~n~~~~~~La~i~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL 184 (987)
T PRK09782 108 HPGDARLERSLAAIPVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTL 184 (987)
T ss_pred CcccHHHHHHHHHhccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHH
Confidence 455555555555555556666677777665322 23333333322 333333344444 222223 33333
Q ss_pred HH-HHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 046803 75 NT-LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH-LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYA 152 (580)
Q Consensus 75 ~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 152 (580)
.. +...|.+.|++++|++++.++.+.+.. +..-...+-.++.. .++ +.+..++.. .+..++.+...+++.|.
T Consensus 185 ~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi 258 (987)
T PRK09782 185 RTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALA 258 (987)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHH
Confidence 33 377888888888888888888887533 33334555556665 355 666666442 33467888889999999
Q ss_pred hCCCHHHHHHHHccCCC-----CChhHH-------------------------------------------H--------
Q 046803 153 KSNNVDVARKVFDRMPD-----KSVVAW-------------------------------------------N-------- 176 (580)
Q Consensus 153 ~~g~~~~A~~~f~~~~~-----~~~~~~-------------------------------------------~-------- 176 (580)
+.|+.++|.+++++++. ++..+| .
T Consensus 259 ~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (987)
T PRK09782 259 YRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLAT 338 (987)
T ss_pred HCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 99999999999988752 000000 0
Q ss_pred ------------------------------------------HHHHHHHhCCChhHHHHHHHHHHHC-C-CCCChhHHHH
Q 046803 177 ------------------------------------------SMISGYEQNGFAKEAIGLFNLMRDF-G-VNPDSTTCVC 212 (580)
Q Consensus 177 ------------------------------------------~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ 212 (580)
-+....+++|+.++|.++|+..... + -.++......
T Consensus 339 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 418 (987)
T PRK09782 339 LPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMAR 418 (987)
T ss_pred CCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHH
Confidence 0000123456666666666655431 0 0111111212
Q ss_pred HHHHHHhC---------------------------------------------------------------CChHHHHHH
Q 046803 213 VLAACAQL---------------------------------------------------------------GDIDLGRWV 229 (580)
Q Consensus 213 ll~a~~~~---------------------------------------------------------------~~~~~a~~~ 229 (580)
++..+... +..++|...
T Consensus 419 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a 498 (987)
T PRK09782 419 LASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYA 498 (987)
T ss_pred HHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHH
Confidence 23333222 344445554
Q ss_pred HHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 046803 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307 (580)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 307 (580)
+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. |+
T Consensus 499 ~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~ 574 (987)
T PRK09782 499 WLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LG 574 (987)
T ss_pred HHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cc
Confidence 44444432 3333333344445678888888888876653 444556667777888888888888888887743 44
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHH
Q 046803 308 NV-TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLG 385 (580)
Q Consensus 308 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~ 385 (580)
.. .+..+.......|++++|...+++..+ ..|+...+..+..++.+.|++++|++.+++.+...|+ ...+..+..
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 32 333334445566999999999998874 4577888999999999999999999999999988995 778888889
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
++...|++++|+..++++++..|+++..+..++.+|...|++++|...+++..+..
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999997754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-15 Score=161.48 Aligned_cols=387 Identities=9% Similarity=-0.002 Sum_probs=260.0
Q ss_pred HHhccCChhHHHHHHccCCC--CCh-hhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhh-HH--HHHHHHHccCCh
Q 046803 49 LVCDAGFITYAQRIFFCIPS--PDS-FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT-FS--AVIKSCAHLSIL 122 (580)
Q Consensus 49 ~~~~~~~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~--~ll~a~~~~~~~ 122 (580)
..++.|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++.. .|+... +. .+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 34566677777777776654 322 112266666666777777777777765 222222 22 223355566777
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCCh--hHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046803 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSV--VAWNSMISGYEQNGFAKEAIGLFNLMRD 200 (580)
Q Consensus 123 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (580)
+.|.++++++++... .++.++..++..|...++.++|++.++++...+. ..+..++..+...++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 777777777776652 3355555666777777777777777777665333 2332232233334455457777777766
Q ss_pred CCCCCChhHHHHHHHHHHhCCChHHHHH------------------------------------------------HHHH
Q 046803 201 FGVNPDSTTCVCVLAACAQLGDIDLGRW------------------------------------------------VHEF 232 (580)
Q Consensus 201 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~------------------------------------------------~~~~ 232 (580)
.. +-+...+.....+..+.|-...|.+ -++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 42 2233344444444444443333322 2223
Q ss_pred HHHc-C-CCCcHHH-hhH---HhhHhhhcCCHHHHHHHHHhccCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046803 233 IVGQ-G-LDVNVVL-ATS---LINMYARCGNVSKAREIFDMMSEL----NVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302 (580)
Q Consensus 233 ~~~~-~-~~~~~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 302 (580)
+... + .|+.... ..+ -+-++.+.|+..++++.|+.+... ...+--+...+|...+++++|+.+|+++...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 2321 1 1222122 222 234567789999999999999842 2345567889999999999999999998764
Q ss_pred C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC----------CCCC---HHHHHHHHHHHHHcCCHHHHH
Q 046803 303 G-----VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG----------LLPG---VEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 303 g-----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~ 364 (580)
. ..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 122334457888999999999999999999976211 0122 344556778889999999999
Q ss_pred HHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 365 KFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 365 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+.+++.+...| |...+..+...+...|.+.+|++.++.+..++|++..+...++..+...|+|++|.++.+.+.+..
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99988888888 789999999999999999999999999999999999999999999999999999999998887653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-15 Score=161.73 Aligned_cols=406 Identities=10% Similarity=-0.036 Sum_probs=296.2
Q ss_pred chHHHHHHHHHHhCCCCChhhhchH-HHHHhccCChhHHHHHHccCCCC---ChhhHHHHHHHHHcC-CCccHHHHHHHH
Q 046803 22 KPLQQVHAHLIVAGYGRSRSMLTKL-LSLVCDAGFITYAQRIFFCIPSP---DSFLFNTLIIRNSKA-NFSTDSLLFYRR 96 (580)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~~~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~ 96 (580)
+.+..... .......|++.+...+ .+.|..++++++|.+.+.++.+. +..-+..|-..|.++ ++ +++..+++.
T Consensus 164 eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~ 241 (987)
T PRK09782 164 PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ 241 (987)
T ss_pred HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch
Confidence 44444444 3333344455555555 77888999999999999988752 334466677788873 66 788888653
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCC-CchH------------------------------HHH
Q 046803 97 MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SDLH------------------------------VQA 145 (580)
Q Consensus 97 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~------------------------------~~~ 145 (580)
.++-|......+...+.+.|+.++|.+++..+...-.. |... ..-
T Consensus 242 ----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (987)
T PRK09782 242 ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVG 317 (987)
T ss_pred ----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHH
Confidence 23457788889999999999999999998754322110 1100 011
Q ss_pred HHHHHHHhC---------------------------------------------------------------CCHHHHHH
Q 046803 146 ALVNFYAKS---------------------------------------------------------------NNVDVARK 162 (580)
Q Consensus 146 ~li~~y~~~---------------------------------------------------------------g~~~~A~~ 162 (580)
.++..+.+. |+.++|.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~ 397 (987)
T PRK09782 318 ATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAAD 397 (987)
T ss_pred HHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 113333333 33444444
Q ss_pred HHccCCC--------------------------------------------------------------------C--Ch
Q 046803 163 VFDRMPD--------------------------------------------------------------------K--SV 172 (580)
Q Consensus 163 ~f~~~~~--------------------------------------------------------------------~--~~ 172 (580)
+|++.-. + +.
T Consensus 398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~ 477 (987)
T PRK09782 398 LLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDA 477 (987)
T ss_pred HHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCH
Confidence 4432211 0 12
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
..|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+...+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 233444444444 5666788777766653 466555555556667899999999999998665 44455566778889
Q ss_pred hhcCCHHHHHHHHHhccCCChHHHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSELNVIAWT---AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 329 (580)
.+.|+.++|...|++..+.++..++ .+.......|++++|+..|++..+ ..|+...+..+..++.+.|+.++|..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988764333333 333344456999999999999998 46778889999999999999999999
Q ss_pred HHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 330 VFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 330 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
.|++... ..| +...+..+..++...|++++|++.+++++...|+ +..+..+..++...|++++|+..+++++++.
T Consensus 631 ~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 631 DLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999974 345 5778888999999999999999999999988884 8889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 408 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
|++..+....+....+..+++.|.+.+++....++.
T Consensus 708 P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 708 DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999988887665554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-14 Score=151.32 Aligned_cols=356 Identities=12% Similarity=0.048 Sum_probs=274.7
Q ss_pred HHHHHcCCCccHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Q 046803 78 IIRNSKANFSTDSLLFYRRMIVSNISPSN--YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155 (580)
Q Consensus 78 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 155 (580)
+-...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++.+.. -+.......++...|...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 34567899999999999999875 4553 233 7777888889999999999998821 1222334444467899999
Q ss_pred CHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 046803 156 NVDVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232 (580)
Q Consensus 156 ~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 232 (580)
++++|.++|+++.+. +...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|.+.+++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999998763 5567778889999999999999999999874 56766665554444456666669999999
Q ss_pred HHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC------------------------------------------
Q 046803 233 IVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE------------------------------------------ 270 (580)
Q Consensus 233 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------------------------------------ 270 (580)
+.+.. |.+...+..++....+.|-...|.++..+-+.
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 99886 66777777777777777776666665543320
Q ss_pred -----------CCh-HHH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 271 -----------LNV-IAW----TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 271 -----------~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
|.. ..| --.+-++...|+..++++.|+.|...+.+....+-..+..+|...+.+++|..+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 110 011 1234467788999999999999998886644557889999999999999999999998
Q ss_pred HHhcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC-------------C--C-HHHHHHHHHHHHhcCCch
Q 046803 335 RQEYG----LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-------------P--A-PAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 335 ~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------p--~-~~~~~~ll~~~~~~g~~~ 394 (580)
....+ ..++......|.-+|...+++++|..++++..... | | ......++..+...|+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 76432 23345556789999999999999999997666322 2 2 234556677889999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+|++.+++++...|.|+.....+++++...|...+|.+.++.....
T Consensus 434 ~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 434 TAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999777654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-13 Score=137.53 Aligned_cols=113 Identities=11% Similarity=-0.000 Sum_probs=52.7
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCCCCC------hhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhH--H
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIPSPD------SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTF--S 110 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~ 110 (580)
|+.+.|.|-+.|.-.++++.+..+...+...+ ..+|-.+..+|-..|++++|...|.+..+. .||.+++ .
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLV 346 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccccc
Confidence 44555555555555555555555444333211 123444555555555555555555444432 2333222 2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 046803 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154 (580)
Q Consensus 111 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 154 (580)
-+.+.+...|+++.+...|+.+.+.. +.+..+...|...|+..
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHS 389 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhh
Confidence 33444555555555555555555442 33334444444444444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-12 Score=124.45 Aligned_cols=411 Identities=9% Similarity=0.065 Sum_probs=330.2
Q ss_pred CCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHH
Q 046803 20 RLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRR 96 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 96 (580)
..++++-+..+.++.- ..+..+|.+|- +.-.++.|.+++....+ .+...|-+-...--.+|+.+....+..+
T Consensus 391 ~~~darilL~rAvecc-p~s~dLwlAla----rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 391 EPEDARILLERAVECC-PQSMDLWLALA----RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred ChHHHHHHHHHHHHhc-cchHHHHHHHH----HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456777777776642 33455665555 77788899999876543 5777888877777888998888888765
Q ss_pred ----HHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHccCCC-
Q 046803 97 ----MIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD--LHVQAALVNFYAKSNNVDVARKVFDRMPD- 169 (580)
Q Consensus 97 ----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~- 169 (580)
+...|+..+...|..=..+|-..|..-.+..+...++..|+... ..+|+.-...|.+.+.++-|+.+|....+
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999999999988887543 45888888999999999999999987765
Q ss_pred --CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhH
Q 046803 170 --KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247 (580)
Q Consensus 170 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 247 (580)
.+...|...+..--..|..++-..+|++.... .+-....|.....-.-..|++..|+.++.++.+.. +.+..+|-+
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwla 623 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLA 623 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 35678888888777889999999999999876 34455566666666777899999999999999886 558889999
Q ss_pred HhhHhhhcCCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCH
Q 046803 248 LINMYARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLV 324 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~ 324 (580)
-+..-+....++.|+.+|.+... ++...|.--+...-..++.++|++++++.++ .-|+. ..|..+...+-+.+++
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHH
Confidence 99999999999999999998764 6777888777777788999999999999887 45665 4677777888899999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
+.|...|..-.+ ..+..+..|-.|.+.=-+.|.+-.|..++++..-..| +...|...+..-.+.|+.+.|..+..++
T Consensus 702 e~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998876553 2333577888888888889999999999988776677 5888999999999999999999999988
Q ss_pred HhcCCCC------------------------------cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 404 LSVEPEN------------------------------PGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 404 ~~~~p~~------------------------------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
++--|.+ +......+.++....+++.|.+.|.+..+.+
T Consensus 780 LQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 780 LQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8765554 3444566777888888888888888887754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9e-12 Score=117.17 Aligned_cols=289 Identities=13% Similarity=0.185 Sum_probs=177.9
Q ss_pred HHHHHHhc--CCCCchHHHHHHHHHHhCCCCChhhhchHHHH--HhccCC-------------------------hhHHH
Q 046803 10 AYEAILKA--GPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSL--VCDAGF-------------------------ITYAQ 60 (580)
Q Consensus 10 ~~~~ll~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~-------------------------~~~A~ 60 (580)
|=+.|++- .+.++++.-++.+|...|.+.+..+--.|++. |.+..+ -+-|.
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 34445443 34568888899999988888777776666532 222221 11233
Q ss_pred HHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc
Q 046803 61 RIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD 140 (580)
Q Consensus 61 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 140 (580)
-+|+..| ++..++..||.++++-...+.|.+++++-.....+.+..+||.++.+-.- ..++++..+|+...+.||
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCc
Confidence 3344333 45568889999999988899999999998887788888999998877443 334788888988888999
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHcc----CC----CCChhHHHHHHHHHHhCCChhH-HHHHHHHHHHC----CCC---
Q 046803 141 LHVQAALVNFYAKSNNVDVARKVFDR----MP----DKSVVAWNSMISGYEQNGFAKE-AIGLFNLMRDF----GVN--- 204 (580)
Q Consensus 141 ~~~~~~li~~y~~~g~~~~A~~~f~~----~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~--- 204 (580)
..++|+++.+.++.|+++.|++.+-+ |. +|...+|..+|..+.+-++..+ |..++.++... .++
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 99999999999999988877655433 32 3566666666666666666543 33333443321 122
Q ss_pred C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCc---HHHhhHHhhHhhhcCCHHHHHHHHHhccC----CC
Q 046803 205 P-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG----LDVN---VVLATSLINMYARCGNVSKAREIFDMMSE----LN 272 (580)
Q Consensus 205 p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~ 272 (580)
| |..-|...+..|.+..+.+.|.+++..+.... +.|+ ..-|..+....++...++.-...|+.|.. |+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 2 33456666666666666666666665554221 1221 12333444445555555555555555542 34
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHG 303 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 303 (580)
..+-..++.+..-.|.++-.-++|..+...|
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 4444444555555555555555555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-16 Score=148.68 Aligned_cols=258 Identities=17% Similarity=0.182 Sum_probs=111.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH-HHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc
Q 046803 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC-VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255 (580)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 255 (580)
.+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|.+.++.+.+.+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 3456667778888888888654443223444433 334445566778888888888888765 3366667777777 688
Q ss_pred CCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046803 256 GNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFA 332 (580)
Q Consensus 256 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 332 (580)
+++++|.+++...-+ ++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888876643 566677888888999999999999999987533 34566677788888999999999999999
Q ss_pred HhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 333 SMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 333 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
+..+. .| +......++..+...|+.+++.++++...... .|+..|..+..++...|+.++|...++++.+.+|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99853 46 47788889999999999999888885444332 356678899999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 411 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+.....++.++...|+.++|.+++++..+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-12 Score=122.98 Aligned_cols=202 Identities=13% Similarity=0.166 Sum_probs=149.0
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc---CCChHHHHHHHHHHHhcCChHHHHHHHH
Q 046803 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS---ELNVIAWTAMISGYGMHGYGTEAVELFH 297 (580)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 297 (580)
|++++|...+.+.+...-.-....|| +.-.+-+.|++++|.+.|-++. ..++...-.+.+.|-...+..+|++++.
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 56666666666666544222222333 2334566777777777776654 3555666666777777778888888876
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCH
Q 046803 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP 377 (580)
Q Consensus 298 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 377 (580)
+.... ++.|......|...|-+.|+-.+|.+.+-.--+ -++.+.++...|..-|....-.++|+.+|+++.-+.|+.
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 66542 344556777788888888888888887655432 344467787778888888888899999998888889999
Q ss_pred HHHHHHHHHH-HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 378 AVWTAMLGAC-KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 378 ~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
.-|..++..| ++.|+++.|..+|+...+..|.|......|..++...|.
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999888776 678999999999999999999999999999998887775
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-12 Score=131.26 Aligned_cols=382 Identities=10% Similarity=0.028 Sum_probs=248.6
Q ss_pred ChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCC--CChhhHHHHHHHHHccCChHHHHHHH
Q 046803 55 FITYAQRIFFCIP---SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNIS--PSNYTFSAVIKSCAHLSILNLGRAVH 129 (580)
Q Consensus 55 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~ 129 (580)
.+..+...+...- ..|++..|.|.+-|.-.|++..++.+...+...... .-..+|-.+.+++-..|+++.|.+.|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3444444444322 357777888888888888888888888887664311 12234667778888889999998888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCC----ChhHHHHHHHHHHHCC
Q 046803 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNG----FAKEAIGLFNLMRDFG 202 (580)
Q Consensus 130 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g 202 (580)
.+..+.....-...+--|..+|.+.|+++.|...|+.+.. | +..+...|...|+..+ ..++|..++.+..+.-
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 8877664322233445577888899999999888888754 3 4456666777777664 4566666666665542
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHHHH----HcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-------C
Q 046803 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV----GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-------L 271 (580)
Q Consensus 203 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~ 271 (580)
+.|...|..+...+.... ...+...+..+. ..+-++.+.+.|.+...+...|++.+|...|..... +
T Consensus 411 -~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred -cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 345667777766665443 333355554433 445567788889999999999999999998887652 2
Q ss_pred Ch------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH
Q 046803 272 NV------IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344 (580)
Q Consensus 272 ~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 344 (580)
|. .+--.+...+-..++.+.|.+.|....+. .|.-+ .|..++......+...+|...++.... ....++
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np 564 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNP 564 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCc
Confidence 22 12223455555667788888888888773 45543 344444333345677777777777765 333444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHc---CCCCCHHHHHHHHHHHHh------------cCCchHHHHHHHHHHhcCCC
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVI---GEKPAPAVWTAMLGACKM------------HKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~ 409 (580)
..++-+.+.+.+...+..|.+-|+... ...+|+.+.-+|...|.+ .+..++|+++|.++++.+|.
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk 644 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK 644 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc
Confidence 455556667777777766666442111 223566666666665532 23467778888888888888
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 410 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
|..+-+-++-+++..|++.+|..+|...++...
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 877777788888888888888888888877543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-12 Score=129.08 Aligned_cols=329 Identities=10% Similarity=0.103 Sum_probs=246.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccC---CCCChhHHHHHHHHHHhCCChhHHHHH
Q 046803 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM---PDKSVVAWNSMISGYEQNGFAKEAIGL 194 (580)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~ 194 (580)
..|++++|..++.++++.. +.....|.+|...|-..|+.+++...+--. ...|..-|..+.....+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3499999999999999886 556778888999999999999988766433 335778899999999999999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhh----HHhhHhhhcCCHHHHHHHHHhccC
Q 046803 195 FNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT----SLINMYARCGNVSKAREIFDMMSE 270 (580)
Q Consensus 195 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~y~~~g~~~~A~~~~~~~~~ 270 (580)
|.+.++.. +++...+---...|-+.|+...|..-+.++.+...+.|..-.- ..+..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99988763 4455555566777888899999999998888875333333232 345566777777888888876653
Q ss_pred -----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---------------------------CHHHHHHHHHHH
Q 046803 271 -----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP---------------------------NNVTFVAVLSAC 318 (580)
Q Consensus 271 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------d~~t~~~ll~a~ 318 (580)
-+...++.++..|.+..+++.|......+......+ +... .-+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 344577888888888888999988888776622222 2222 1222234
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC--CHHHHHHHHHHHHhcCCch
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLP--GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP--APAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~ 394 (580)
.+....+....+.....++ .+.| +...|.-+.++|...|++.+|+.++.......+ +..+|..+...|...|.++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4445444444444444433 5434 578899999999999999999999955554444 4678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 450 (580)
+|++.|++++...|++..+-..|+.+|.+.|+.++|.+++..+..-+-...+++.|
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999876333222344444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-12 Score=129.77 Aligned_cols=276 Identities=11% Similarity=0.084 Sum_probs=185.7
Q ss_pred CCCHHHHHHHHccCCCC--C-hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHH--HHHHHHHhCCChHHHHH
Q 046803 154 SNNVDVARKVFDRMPDK--S-VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV--CVLAACAQLGDIDLGRW 228 (580)
Q Consensus 154 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 228 (580)
.|+++.|++.+...++. + ...|........+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777765542 1 223333334446778888888888877653 45543332 23456677788888888
Q ss_pred HHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC---h--------HHHHHHHHHHHhcCChHHHHHHHH
Q 046803 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN---V--------IAWTAMISGYGMHGYGTEAVELFH 297 (580)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~~~~ 297 (580)
.++.+.+.. |.+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877775 5567777777888888888888887777776421 1 123333333334445556666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-
Q 046803 298 RMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA- 376 (580)
Q Consensus 298 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~- 376 (580)
.+.+. .+.+......+..++...|+.++|.++++...+ ..|+.... ++.+....++.+++++.+++.....|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65442 234566777778888888888888888877764 23444222 223333558888888888777777774
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 377 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..+..+...|...+++++|.+.|+++++..|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6667788888888888888888888888888874 5567888888888888888888876543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-11 Score=116.35 Aligned_cols=387 Identities=14% Similarity=0.140 Sum_probs=295.5
Q ss_pred ChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 046803 55 FITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131 (580)
Q Consensus 55 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 131 (580)
++..|+.+|++... ++...|---+..-.++.....|..++++.+..=.+.|..-|. -+-.=-..|++..|+++|..
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHHHHH
Confidence 78889999998664 778889888999999999999999999988754444444332 22233457999999999998
Q ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCC--CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-
Q 046803 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP--DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST- 208 (580)
Q Consensus 132 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 208 (580)
-.. ..|+...|++.|++=.+-..++.|+.++++.. .|++.+|--....-.++|+...|..+|....+. -.|..
T Consensus 167 W~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~ 242 (677)
T KOG1915|consen 167 WME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEE 242 (677)
T ss_pred HHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHH
Confidence 875 48999999999999999999999999999864 589999999999999999999999999988764 22333
Q ss_pred ---HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc--HHHhhHHhhHhhhcCCHHHHHHHH--------HhccC---CC
Q 046803 209 ---TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN--VVLATSLINMYARCGNVSKAREIF--------DMMSE---LN 272 (580)
Q Consensus 209 ---t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~--------~~~~~---~~ 272 (580)
.|.+...-=.....++.|.-+|...++.= |.+ ...|..+...=-+-|+.....+.. +.+.. -|
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 34444444445678889999999988762 333 455666655555556654444332 22222 34
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHH---HhcCCHHHHHHHHHHhHHhcCCCC
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-------TFVAVLSAC---AHAGLVQEGHRVFASMRQEYGLLP 342 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p 342 (580)
-.+|--.+..--..|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+++.+.++|+...+ -++.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence 567877888888889999999999999875 666321 222222222 246889999999998874 3333
Q ss_pred CHHHHHHH----HHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH
Q 046803 343 GVEHHVCM----VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418 (580)
Q Consensus 343 ~~~~~~~l----i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 418 (580)
...++.-+ .....|+.++..|.+++-.++|.-|...+|...|..-.+.+++|....+|++.++.+|.|-.++...+
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 44455444 34445889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 046803 419 NIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450 (580)
Q Consensus 419 ~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 450 (580)
..-...|+++.|..+|+.........-|..-|
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999999999998876554444433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-13 Score=133.91 Aligned_cols=244 Identities=12% Similarity=0.086 Sum_probs=129.3
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCcHHHhhHHhhHhhhcCCHHHHHHHH
Q 046803 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG--LDVNVVLATSLINMYARCGNVSKAREIF 265 (580)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~ 265 (580)
.++|+..|.+.... +.-.......+..+|...+++++++.+|+.+.+.. ...+..+|.+.+.-+-+.=.+.---+-+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566666553332 22222344455556666666666666666655542 1123444544443222111111101111
Q ss_pred HhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH
Q 046803 266 DMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344 (580)
Q Consensus 266 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 344 (580)
-.+....+.+|-++.+.|..+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... + .+.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~--~~~ 486 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G--VDP 486 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--CCc
Confidence 111123445666666666666666666666666655 344 34555555555555556666666665544 2 233
Q ss_pred HHHH---HHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 345 EHHV---CMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 345 ~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
.+|+ .|...|.++++++.|+-.|++++.+.| +.+....+...+.+.|+.|+|+++++++.-++|.|+-.-+..+.+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 3333 344556666666666666666666666 344455555566666666666666666666666666666666666
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 046803 421 YALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 421 y~~~g~~~~a~~~~~~m~~ 439 (580)
+...+++++|.+.++++++
T Consensus 567 l~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHhhcchHHHHHHHHHHHH
Confidence 6666666666666666654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-13 Score=132.35 Aligned_cols=276 Identities=13% Similarity=0.085 Sum_probs=222.2
Q ss_pred CHHHHHHHHccCCC--CCh-hHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCChhHHHHHHHHHHhCCChHHHHHHH
Q 046803 156 NVDVARKVFDRMPD--KSV-VAWNSMISGYEQNGFAKEAIGLFNLMRDFG--VNPDSTTCVCVLAACAQLGDIDLGRWVH 230 (580)
Q Consensus 156 ~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 230 (580)
+..+|...|..+++ .|. .....+..+|...+++++|.++|+...+.. ..-+..+|.+++..+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46789999988765 233 344567889999999999999999998742 11256788888876533 2223333
Q ss_pred H-HHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 046803 231 E-FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL---NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306 (580)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 306 (580)
. .+++.. +..+.+|-++.++|+-+++.+.|++.|++..+. ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 3 233333 667899999999999999999999999998864 457888888889999999999999999875 344
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHH
Q 046803 307 NN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAM 383 (580)
Q Consensus 307 d~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 383 (580)
.. ..|-.+...|.+.++++.|+-.|+++. .+.| +.....++...+-+.|+.++|+++++++.-.+| |+..----
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 43 466677889999999999999999887 5667 466777788999999999999999999998777 55554555
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 384 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+..+...+++++|.+.++++.++-|++...+..++.+|-+.|+.+.|..-|.-+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6677788999999999999999999999999999999999999999998888776543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-12 Score=127.71 Aligned_cols=221 Identities=8% Similarity=-0.064 Sum_probs=147.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH-------HHhhHHhhHh
Q 046803 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV-------VLATSLINMY 252 (580)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y 252 (580)
..+...|++++|.+.++++.+.. +-+......+...+.+.|+++++..++..+.+.+..++. .+|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554432 112334444445555555555555555555544322111 1223333333
Q ss_pred hhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 329 (580)
.+..+.+...++++.+++ .++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHH
Confidence 444556666777777653 46778888888999999999999999888873 444422 12334445588999999
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
..+...+. .+-|...+.++...+.+.|++++|.+.|+..+...|+...+..|...+...|+.++|.+++++.+.+-
T Consensus 316 ~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99888764 23356678889999999999999999998888889998888899999999999999999999987653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-11 Score=117.64 Aligned_cols=356 Identities=13% Similarity=0.074 Sum_probs=240.7
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHH
Q 046803 74 FNTLIIRNSKANFSTDSLLFYRRMIVSNISPS-NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD-LHVQAALVNFY 151 (580)
Q Consensus 74 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y 151 (580)
+-...+-|.++|++++|++.|.+.+. ..|| ..-|.....+|...|+++.+.+.-...++.. |+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 34445667888999999999999887 4677 5556777777788899888877766666543 33 23444444555
Q ss_pred HhCCCHHHHHH----------------------HHcc---------CC---C---CChhHHHHHHHHHH-----------
Q 046803 152 AKSNNVDVARK----------------------VFDR---------MP---D---KSVVAWNSMISGYE----------- 183 (580)
Q Consensus 152 ~~~g~~~~A~~----------------------~f~~---------~~---~---~~~~~~~~li~~~~----------- 183 (580)
-..|++++|+. ++.. +. . |+....++....+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 56666665532 1110 11 0 11111111111110
Q ss_pred --------------hCC---ChhHHHHHHHHHHHC-CCCC-----Chh------HHHHHHHHHHhCCChHHHHHHHHHHH
Q 046803 184 --------------QNG---FAKEAIGLFNLMRDF-GVNP-----DST------TCVCVLAACAQLGDIDLGRWVHEFIV 234 (580)
Q Consensus 184 --------------~~g---~~~~A~~~~~~m~~~-g~~p-----~~~------t~~~ll~a~~~~~~~~~a~~~~~~~~ 234 (580)
..+ .+.+|...+.+-... -..+ |.. +.......+.-.|+.-.+.+-++..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 001 122222222111100 0011 111 11111111223467788888888888
Q ss_pred HcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHH
Q 046803 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVT 310 (580)
Q Consensus 235 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t 310 (580)
+.. +.+...|--+..+|....+.++..+.|+...+ .|..+|..-.+.+.-.+++++|..-|++.+. +.|+ ...
T Consensus 354 ~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~ 430 (606)
T KOG0547|consen 354 KLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYA 430 (606)
T ss_pred hcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHH
Confidence 875 33444477777889999999999999998764 4566777777777888899999999999988 4554 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---------HHHHH
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---------PAVWT 381 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---------~~~~~ 381 (580)
|.-+.-+..+.+.++++...|++.+++ ++..++.|+-....+..++++++|.+.|+.++...|+ +.+.-
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 777777778899999999999999874 4455788998999999999999999999999977765 11222
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+++. ..-.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|.++|++...
T Consensus 509 a~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 509 ALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222 23448999999999999999999999999999999999999999999998643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-11 Score=123.23 Aligned_cols=280 Identities=7% Similarity=-0.052 Sum_probs=124.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHH-HHHHHHHHHhCCCHHHHHHHHccCCC--CC--hhHHHHHHHHHHhCCChhHHHH
Q 046803 119 LSILNLGRAVHCHVFVSGYDSDLHV-QAALVNFYAKSNNVDVARKVFDRMPD--KS--VVAWNSMISGYEQNGFAKEAIG 193 (580)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~ 193 (580)
.|+++.|++......+.. |++.. +-....++...|+.+.|.+.|.+..+ |+ ....-.....+.+.|++++|.+
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 455555555555444432 22221 22223444555555555555554322 11 1122223445555556666666
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhh-------HHhhHhhhcCCHHHHHHHHH
Q 046803 194 LFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLAT-------SLINMYARCGNVSKAREIFD 266 (580)
Q Consensus 194 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~y~~~g~~~~A~~~~~ 266 (580)
.++.+.+.. +-+...+..+..++...|+++.+.+++..+.+.+..+...... .++..-......+...+.+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 665555542 2233345555555555566666666655555554322211111 11111011112233333344
Q ss_pred hccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 046803 267 MMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF---VAVLSACAHAGLVQEGHRVFASMRQEYGL 340 (580)
Q Consensus 267 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 340 (580)
..++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+...-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 3332 25555666666666666666666666666653 2333210 11111112234444455555444432211
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH--hHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 341 LPGVEHHVCMVDLFGRAGLLNEAYKFVK--DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 341 ~p~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
.|+.....++...+.+.|++++|.+.|+ ......|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1211333444555555555555555553 23344455444445555555555555555555544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-10 Score=110.91 Aligned_cols=386 Identities=10% Similarity=0.037 Sum_probs=288.4
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 115 (580)
++.+|-+-+ ..-+.++|+.++.+..+ .+...|. +|++..-++.|..+++..++. ++-+...|.+....
T Consensus 379 sv~LWKaAV----elE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~L 449 (913)
T KOG0495|consen 379 SVRLWKAAV----ELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKL 449 (913)
T ss_pred hHHHHHHHH----hccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHH
Confidence 344444444 55555566666655433 2333343 334445566677777776653 55566666555555
Q ss_pred HHccCChHHHHHHHHHHH----HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC-----C-ChhHHHHHHHHHHhC
Q 046803 116 CAHLSILNLGRAVHCHVF----VSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-----K-SVVAWNSMISGYEQN 185 (580)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~-~~~~~~~li~~~~~~ 185 (580)
=-..|+.+...++..+.+ ..|+..+..-|-.=...+-+.|..-.+..+...... . -..+|+.-...|.+.
T Consensus 450 EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~ 529 (913)
T KOG0495|consen 450 EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR 529 (913)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc
Confidence 556667666666655443 345555666665555556666666666666554432 1 235788888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHH
Q 046803 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265 (580)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 265 (580)
+.++-|..+|...++- ++-+...|......--..|..+.-..++..++..- +.....|-....-+-..|++..|+.++
T Consensus 530 ~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 530 PAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred chHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 8888899999888774 34455677777766667788888888888888774 556667777777888899999999999
Q ss_pred HhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC
Q 046803 266 DMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342 (580)
Q Consensus 266 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 342 (580)
...-+ .+...|-+-+.....+.+++.|..+|.+... ..|+...|.--+..-...++.++|.+++++..+.+ |
T Consensus 608 ~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f---p 682 (913)
T KOG0495|consen 608 DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF---P 682 (913)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC---C
Confidence 88765 3456888888889999999999999999887 56777777777776777899999999999998743 4
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 343 G-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 343 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
+ ...|..+...+-+.++++.|.+.|...+..-|+ +..|..|...--+.|++-.|..++++..-.+|.+...|...+.+
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ 762 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRM 762 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 4 667888999999999999999999888888886 77899999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 046803 421 YALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 421 y~~~g~~~~a~~~~~~m~~~ 440 (580)
-.+.|+.+.|..+..+..+.
T Consensus 763 ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999998887664
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-11 Score=112.08 Aligned_cols=254 Identities=11% Similarity=0.121 Sum_probs=191.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCcHHHhhHHhhHhhhcCC
Q 046803 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL--DVNVVLATSLINMYARCGN 257 (580)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~ 257 (580)
.++....+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34455556677777777777666655554444444555566788888888888877631 1145566655533322222
Q ss_pred HHH-HHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 258 VSK-AREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 258 ~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
+.- |..++ .+.+--+.|...+.+-|...++.++|...|++..+. .|.. ..++.+..-|....+...|.+-++.++
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 221 22222 222333445566677788889999999999999884 4554 566667778999999999999999987
Q ss_pred HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 336 QEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 336 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
.+.| |-..|-.|.++|.-.+...=|+-.|+++...+| |...|.+|...|.+.++.++|++.|.++...+-.+...
T Consensus 392 ---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 392 ---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred ---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 4445 788999999999999999999999999999999 69999999999999999999999999999988778899
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 414 YVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 414 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..|+.+|.+.++.++|.+.+++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999998765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-11 Score=124.01 Aligned_cols=282 Identities=11% Similarity=0.070 Sum_probs=209.4
Q ss_pred HHhCCCHHHHHHHHccCCCC--C-hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--HHHHHHHHHHhCCChHH
Q 046803 151 YAKSNNVDVARKVFDRMPDK--S-VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST--TCVCVLAACAQLGDIDL 225 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~ 225 (580)
-...|+++.|.+.+.+..+. + ...+-.....+.+.|++++|.+.|.+..+. .|+.. .-......+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 34679999999999877652 2 344555567788899999999999998764 35543 33335777888999999
Q ss_pred HHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCC---ChHHHHH----HHHHHHhcCChHHHHHHHHH
Q 046803 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL---NVIAWTA----MISGYGMHGYGTEAVELFHR 298 (580)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g~~~~A~~~~~~ 298 (580)
|.+.++.+.+.. |.+..+...+..+|.+.|++++|.+.+....+. +...+.. ...++...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999986 667888999999999999999999999988752 3332321 11122333333334445555
Q ss_pred HHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHhHcC
Q 046803 299 MRAHGV---RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH---HVCMVDLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 299 m~~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~ 372 (580)
+.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+++.+.+++.+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 554321 136778888889999999999999999999864 243221 11122222345788999999988887
Q ss_pred CCCC-H--HHHHHHHHHHHhcCCchHHHHHHH--HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 373 EKPA-P--AVWTAMLGACKMHKNFDLGVEVAE--HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 373 ~~p~-~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..|+ + ....++...|.+.|++++|.+.|+ ...+..|++ ..+..++.++.+.|+.++|.+++++...
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7885 5 667799999999999999999999 577777864 5577999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=133.55 Aligned_cols=256 Identities=14% Similarity=0.098 Sum_probs=86.2
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHH-HHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 046803 76 TLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI-KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154 (580)
Q Consensus 76 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 154 (580)
.+...+.+.|++++|++++++.......|+...|-.++ ..+...++.+.|.+.++++++.+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34566677788888888886544433234444444333 3444567778888888877776533 55566666666 577
Q ss_pred CCHHHHHHHHccCCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 046803 155 NNVDVARKVFDRMPD--KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VNPDSTTCVCVLAACAQLGDIDLGRWVHE 231 (580)
Q Consensus 155 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 231 (580)
+++++|.++++..-+ ++...+..++..+.+.++++++.++++...... .+++...|......+.+.|+.++|...+.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777765533 355566677777777788888877777766432 23455566667777777777777777777
Q ss_pred HHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046803 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS---ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308 (580)
Q Consensus 232 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 308 (580)
+.++.. |.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|++..... +.|.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 777764 4456677777777777777777666665543 2455566667777777777777777777766531 2245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
.....+..++...|+.++|.++..++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 555566666667777777766665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-10 Score=109.45 Aligned_cols=247 Identities=13% Similarity=0.127 Sum_probs=121.2
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHhCCCh
Q 046803 115 SCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK------SVVAWNSMISGYEQNGFA 188 (580)
Q Consensus 115 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~ 188 (580)
++......+++.+-.......|++.+...-+-...++-...++|.|+.+|+++... |..+|..++ |+++.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 33344455555555555555555555544444444455555666666666655442 334444443 2222221
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhc
Q 046803 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268 (580)
Q Consensus 189 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 268 (580)
+- ..+.+-.-.=-+--+.|...+.+-|+-.+..++|..+|+..++.+ +....+|+.+.+-|....+...|.+.++..
T Consensus 314 kL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 11 111111100001122344445555555555555555555555554 444555555555555555555555555554
Q ss_pred cC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH
Q 046803 269 SE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV 344 (580)
Q Consensus 269 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 344 (580)
.+ .|-..|-.|.++|...+...-|+-.|++... ++| |...+.+|..+|.+.++.++|.+.|..... .-..+.
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~ 466 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEG 466 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccch
Confidence 43 3444555555555555555555555555554 233 334555555555555555555555555543 212233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhH
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~ 370 (580)
..+..|.++|-+.++.++|...|++-
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555555555555555433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-09 Score=103.26 Aligned_cols=409 Identities=12% Similarity=0.094 Sum_probs=308.0
Q ss_pred chHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCC--C-ChhhHHHHHHHHHcCCCccHHHHHHHHHH
Q 046803 22 KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS--P-DSFLFNTLIIRNSKANFSTDSLLFYRRMI 98 (580)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 98 (580)
..|++|+.+.+.-. ..+..+|-..+..-.+..++..|+.+|++... | --..|.--+-.--..|+...|.++|++-.
T Consensus 90 ~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 90 QRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45788888877654 44666776666555566689999999997543 2 22356666666666799999999998866
Q ss_pred HCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCC------Ch
Q 046803 99 VSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK------SV 172 (580)
Q Consensus 99 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~ 172 (580)
. ..|+...|.+.+..=.+...++.|+.+++..+-. .|++..|--....=.++|....|+.+|+...+. +.
T Consensus 169 ~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 169 E--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred c--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 5 6899999999999988999999999999988754 588888888888889999999999999876541 23
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhCCChHHHHHH--------HHHHHHcCCCCcH
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD--STTCVCVLAACAQLGDIDLGRWV--------HEFIVGQGLDVNV 242 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~--------~~~~~~~~~~~~~ 242 (580)
..+++...--.++..++.|.-+|+-.++. ++-+ ...|......=-+.|+....... ++..++.+ +.|-
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nY 322 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCc
Confidence 45555555556677888899999888775 3333 33454444444455655443332 44455544 6677
Q ss_pred HHhhHHhhHhhhcCCHHHHHHHHHhccC--CCh---HHHHHHHHH--------HHhcCChHHHHHHHHHHHhCCCCCCHH
Q 046803 243 VLATSLINMYARCGNVSKAREIFDMMSE--LNV---IAWTAMISG--------YGMHGYGTEAVELFHRMRAHGVRPNNV 309 (580)
Q Consensus 243 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~pd~~ 309 (580)
.+|--.++.-...|+.+...++|++... |.. ..|...|-. =....+.+.+.++|+..++. ++-..+
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkF 401 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKF 401 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccc
Confidence 7888888888888999999999998763 221 233332221 12467889999999999883 444557
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHH
Q 046803 310 TFVAVLSACA----HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAML 384 (580)
Q Consensus 310 t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll 384 (580)
||.-+--.|+ ++.++..|.+++.... |.-|...++...|..=.+.+.++....+|++-+...| +..+|....
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 7776554444 5788999999999887 8899999999999999999999999999999999999 688899999
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 385 GACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
..-...|+.+.|..+|+-+++....+ ...+-..++.-...|.++.|..+++++.++.
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 99999999999999999998765322 1345566666778999999999999998764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-10 Score=106.44 Aligned_cols=350 Identities=14% Similarity=0.143 Sum_probs=247.5
Q ss_pred CCChhhhchHHHHHhccCChhHHHHHHccCCC----CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHH
Q 046803 37 GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS----PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV 112 (580)
Q Consensus 37 ~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 112 (580)
.....++..+|..+|+..+.+.|++++++-.. -+..+||.+|.+-+-... -++..+|....++||..|||.+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 34567899999999999999999999998764 466789999876543322 6889999999999999999999
Q ss_pred HHHHHccCChHH----HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH-HHHHHccCCC------------CChhHH
Q 046803 113 IKSCAHLSILNL----GRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDV-ARKVFDRMPD------------KSVVAW 175 (580)
Q Consensus 113 l~a~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~f~~~~~------------~~~~~~ 175 (580)
++..++.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ |..+...+.. .|...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998876 46788899999999999999999999999888754 3333333221 245567
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHC----CCCCCh---hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHH
Q 046803 176 NSMISGYEQNGFAKEAIGLFNLMRDF----GVNPDS---TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248 (580)
Q Consensus 176 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 248 (580)
..-++.|.+..+.+-|.++-.-.... -+.|+. .-|..+..+.++....+.-...|+.++-.-+-|+..+..-+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 77777777888888887775544321 133432 34666777888888999999999999877777888888888
Q ss_pred hhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHH
Q 046803 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV---TFVAVLSACAHAGLVQ 325 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~ 325 (580)
+.+..-.|.++-..+++..+.. |...-+.+--++++..|.+....|+.. -+.....-|+. ++.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~------------~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~ 505 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKE------------YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIK 505 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHH------------hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHH
Confidence 8888888888888888777643 222222334455666666666666533 34433333321 222
Q ss_pred HHHH-HHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc------CCCCCHHHHHHHHHHHHhcCCchHHHH
Q 046803 326 EGHR-VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI------GEKPAPAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 326 ~a~~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
++.+ .-.++. ..+-.....++..-.+.|.|+.++|.+++.... +..|......-++....+.++.-.|..
T Consensus 506 e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 506 EAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 2222 122332 223345567788888999999999999994332 233444444566667777888888888
Q ss_pred HHHHHHhcC
Q 046803 399 VAEHLLSVE 407 (580)
Q Consensus 399 ~~~~~~~~~ 407 (580)
+++-+...+
T Consensus 583 ~lQ~a~~~n 591 (625)
T KOG4422|consen 583 VLQLASAFN 591 (625)
T ss_pred HHHHHHHcC
Confidence 888886655
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-11 Score=113.95 Aligned_cols=200 Identities=13% Similarity=0.079 Sum_probs=167.0
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL 315 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 315 (580)
......+..+...|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 33456777888889999999999999987764 346678888889999999999999999988753 23456677788
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCch
Q 046803 316 SACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 316 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~ 394 (580)
..+...|++++|.+.++..............+..+...+...|++++|.+.+++.+...|+ ...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999998753222234566777889999999999999999888877775 678889999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+|...++++.+..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999998888888888999999999999999999888754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-10 Score=110.60 Aligned_cols=387 Identities=12% Similarity=0.043 Sum_probs=270.1
Q ss_pred HHHHHhccCChhHHHHHHc--cCCCCChhhHHHHHHHHHcCCCccHHHHHHH----HHHHC-------C--CCCChhh--
Q 046803 46 LLSLVCDAGFITYAQRIFF--CIPSPDSFLFNTLIIRNSKANFSTDSLLFYR----RMIVS-------N--ISPSNYT-- 108 (580)
Q Consensus 46 ll~~~~~~~~~~~A~~~f~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~-------g--~~p~~~t-- 108 (580)
+.++++-.++++.|..+.. .+.++|..........+.+..++++|+.++. .+..- + +.+|..-
T Consensus 55 ~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~ 134 (611)
T KOG1173|consen 55 LAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGED 134 (611)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCccccc
Confidence 3444555556666655554 4556888888888889999999999998887 22110 0 1111111
Q ss_pred --HHHHH-------HHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-----------------hCC-CHHHHH
Q 046803 109 --FSAVI-------KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYA-----------------KSN-NVDVAR 161 (580)
Q Consensus 109 --~~~ll-------~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-----------------~~g-~~~~A~ 161 (580)
-+.-. ..+....+.++|+..|.+++...+.-. ..+-.|+.... -.+ +.+.-+
T Consensus 135 ~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~-Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~ 213 (611)
T KOG1173|consen 135 LMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF-EAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLE 213 (611)
T ss_pred ccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH-HHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHH
Confidence 01111 123344567777777777665432211 11111111110 001 111112
Q ss_pred HHHccC----C----------------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC
Q 046803 162 KVFDRM----P----------------DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221 (580)
Q Consensus 162 ~~f~~~----~----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 221 (580)
.+|+-. . +.++...-.-..-+...+++.+..++++...+. .++....+..-|.++...|
T Consensus 214 ~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~ 292 (611)
T KOG1173|consen 214 ILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELG 292 (611)
T ss_pred HHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhc
Confidence 222211 0 013334444455677889999999999998875 3556666666677888888
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC---hHHHHHHHHHHHhcCChHHHHHHHHH
Q 046803 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN---VIAWTAMISGYGMHGYGTEAVELFHR 298 (580)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~ 298 (580)
+..+-..+-..+++.- |....+|-++.--|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..|..
T Consensus 293 ~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 293 KSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred ccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 8887777777777764 7778889999999999999999999999877544 46899999999999999999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHc------
Q 046803 299 MRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVI------ 371 (580)
Q Consensus 299 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~------ 371 (580)
.-+. ++-....+.-+.--|.+.++.+.|.++|.... ++.| |+...+-+.-.....+.+.+|..+|+..+
T Consensus 372 Aarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 372 AARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred HHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 7663 11122334445556888999999999999886 6666 57777777777778899999999998776
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 372 -GEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 372 -~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..+ -..+++.|..+|++.+.+++|+..+++++.+.|.++.++..++-+|...|+++.|.+.|.+..-
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 1122 2456889999999999999999999999999999999999999999999999999999988754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-10 Score=104.27 Aligned_cols=315 Identities=14% Similarity=0.121 Sum_probs=176.0
Q ss_pred CCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhCCCHHHH
Q 046803 84 ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD---LHVQAALVNFYAKSNNVDVA 160 (580)
Q Consensus 84 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A 160 (580)
+.++++|.++|-+|.+.... +..+-.++-+-+.+.|..+.|..+|+.+.++.--+. ......|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45678888888888764211 233344556667777888888888887776531111 12334455666677777777
Q ss_pred HHHHccCCCCC---hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 046803 161 RKVFDRMPDKS---VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237 (580)
Q Consensus 161 ~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 237 (580)
+.+|..+.+.+ ..+...|+..|.+..+|++|++.-+++.+.+-++..+- +.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IA----------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IA----------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HH-----------------------
Confidence 77777666532 23455566666666777777766666665443322211 00
Q ss_pred CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 046803 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELN---VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314 (580)
Q Consensus 238 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 314 (580)
..|--|...+....+++.|..++.+..+.| +.+--.+...+...|+++.|++.++...+.+..--..+...|
T Consensus 181 -----qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 181 -----QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 111122222223334444444444443321 122223445556666777777777766665333333455566
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCch
Q 046803 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 315 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 394 (580)
..+|.+.|+.+++...+.++.+. .++...-..+.+.-....-.+.|...+.+.+..+|+...+..|+..-..-
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d---- 328 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD---- 328 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc----
Confidence 66777777777777777766542 24444444444544455556666666666677777766665555432211
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCC
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~ 464 (580)
+..|++.+...+++.|....++..|.+.--..+-..|.|...+
T Consensus 329 ---------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~C 371 (389)
T COG2956 329 ---------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHC 371 (389)
T ss_pred ---------------------------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeC
Confidence 1234566777777777776676666665555555556665544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-10 Score=114.84 Aligned_cols=353 Identities=10% Similarity=0.056 Sum_probs=228.0
Q ss_pred CCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 046803 85 NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF 164 (580)
Q Consensus 85 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 164 (580)
|+.++|.+++.+.++.... +...|-+|...+-..|+.+++...+-.+--. .+.|...|-.+.+...+.|+++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 7777777777777665332 4556777777777777777766554333222 2445667777777777777777777777
Q ss_pred ccCCCCChh---HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhCCChHHHHHHHHHHHHc-
Q 046803 165 DRMPDKSVV---AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS----TTCVCVLAACAQLGDIDLGRWVHEFIVGQ- 236 (580)
Q Consensus 165 ~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~- 236 (580)
.+..+.+.. ..---+..|-+.|+...|++-|.++.....+.|. .+.-.++..+...++-+.|.+.+......
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 766653332 2223345667777777777777777664211111 12223344555555556676666666552
Q ss_pred CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC----CCh----------------------HHHH----HHHHHHHhc
Q 046803 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSE----LNV----------------------IAWT----AMISGYGMH 286 (580)
Q Consensus 237 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~----------------------~~~~----~li~~~~~~ 286 (580)
+-..+...++.++.+|.+...++.|......+.. +|. .+|. -+.-++...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 1233455666777777777777777666544432 111 1111 122233344
Q ss_pred CChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 046803 287 GYGTEAVELFHRMRAHGVRP--NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 287 g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 364 (580)
...+....+..-..+..+.| +...|.-+..++.+.|.+.+|..+|..+.... ..-+...|-.+..+|...|..++|.
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-GYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-cccchhhhHHHHHHHHHHhhHHHHH
Confidence 44444444444445544333 34578888999999999999999999987542 2234778888999999999999999
Q ss_pred HHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC---------CcchHHHHHHHHHhcCChhHHHHHH
Q 046803 365 KFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE---------NPGHYVMLSNIYALAGRMDRVEVVR 434 (580)
Q Consensus 365 ~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~y~~~g~~~~a~~~~ 434 (580)
+.|+..+...|+ ..+--.|...+.+.|+.++|.+.++++..-++. +.........+|...|+.++-..+-
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999888888885 666778888899999999999999987633322 2345567788899999999877776
Q ss_pred HHHHhC
Q 046803 435 NIMIQK 440 (580)
Q Consensus 435 ~~m~~~ 440 (580)
..|...
T Consensus 550 ~~Lv~~ 555 (895)
T KOG2076|consen 550 STLVDD 555 (895)
T ss_pred HHHHHH
Confidence 666553
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-10 Score=102.74 Aligned_cols=211 Identities=12% Similarity=0.082 Sum_probs=138.1
Q ss_pred ccCChhHHHHHHccCCCCChhhHH---HHHHHHHcCCCccHHHHHHHHHHHCCCCCChh------hHHHHHHHHHccCCh
Q 046803 52 DAGFITYAQRIFFCIPSPDSFLFN---TLIIRNSKANFSTDSLLFYRRMIVSNISPSNY------TFSAVIKSCAHLSIL 122 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~~~~~~ 122 (580)
-..+.+.|..+|-+|.+-|..++. +|.+.|-+.|..+.|+++-..+.++ ||.. ..-.+..-|-..|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 466899999999999886666554 5778899999999999999998764 3321 223344556778999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChh--------HHHHHHHHHHhCCChhHHHHH
Q 046803 123 NLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV--------AWNSMISGYEQNGFAKEAIGL 194 (580)
Q Consensus 123 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~ 194 (580)
+.|+.+|..+...| ..-.....-|+..|-...+|++|+++-+++..-+.. .|--|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998755 334556778999999999999999998876553333 344444555556666677777
Q ss_pred HHHHHHCCCCCChh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhc
Q 046803 195 FNLMRDFGVNPDST-TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMM 268 (580)
Q Consensus 195 ~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 268 (580)
+.+..+. .|+.+ .-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++
T Consensus 203 l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 203 LKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7666654 23222 222334445555566666666665555543333444444444444444444444444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=110.40 Aligned_cols=184 Identities=13% Similarity=0.112 Sum_probs=132.8
Q ss_pred hcCCHHHHHHHHHhccCCChHHHHHHH---HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 254 RCGNVSKAREIFDMMSELNVIAWTAMI---SGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
..|++++|.+.|++....|...-.+|. -.+-..|+.++|++.|-++..- +..+......+.+.|-...+..+|.++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 456777777777777666655443333 2455677788888877776542 233555666777777778888888888
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
+-.... -++.|+...+.|.+.|-+.|+-..|.+.+-+....-| +..+..-|..-|....-+++++..|+++.-+.|+
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 766642 3444688888888888888888888887766666556 5666666666777777789999999999888887
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 410 NPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 410 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
-..-...++.++.+.|++..|..+++....+
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5555556677788999999999999988654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-10 Score=116.17 Aligned_cols=232 Identities=15% Similarity=0.172 Sum_probs=177.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHc-----C-CCCcH-HHhhHHhhHhhhcCCHHHHHHHHHhccC-------C--
Q 046803 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQ-----G-LDVNV-VLATSLINMYARCGNVSKAREIFDMMSE-------L-- 271 (580)
Q Consensus 208 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~-- 271 (580)
.+...+...|...|+++.|..++++.++. | ..|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46777888999999999999998888765 2 12232 2344577889999999999999988763 1
Q ss_pred --ChHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--C
Q 046803 272 --NVIAWTAMISGYGMHGYGTEAVELFHRMRA-----HGV-RPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEYG--L 340 (580)
Q Consensus 272 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 340 (580)
-..+++.|..+|...|++++|...+++..+ .|. .|+.. -++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 235778888899999999998888877653 122 23332 456677789999999999999988776543 2
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHhHcC--------CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh--
Q 046803 341 LPG----VEHHVCMVDLFGRAGLLNEAYKFVKDVIG--------EKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS-- 405 (580)
Q Consensus 341 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 405 (580)
.++ ..+++.|...|...|++++|.+++++++. ..+. ...++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 56789999999999999999999988771 1232 45678899999999999999999998654
Q ss_pred --cCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 406 --VEPEN---PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 406 --~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+|+. ..+|..|+.+|.+.|+++.|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44554 45788999999999999999999988753
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-09 Score=102.09 Aligned_cols=287 Identities=11% Similarity=0.043 Sum_probs=187.0
Q ss_pred CCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 046803 84 ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKV 163 (580)
Q Consensus 84 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 163 (580)
.|++..|..+..+-.+.+-.|- ..|.....+.-..|+.+.+-+++.++-+..-.++..+.-+........|+++.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4777777777777665554332 234445555666777777777777776664455666666666777777777777666
Q ss_pred HccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 046803 164 FDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV 240 (580)
Q Consensus 164 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 240 (580)
.+++.+ .+.........+|.+.|++.+...++..|.+.|+--|+..-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 655432 4566666777777777777777777777776665433321000
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 317 (580)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 012233333333333333333344555442 3455556677777788888888888888877766666 222334
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
+.+-++...-.+..+...+.++..| ..+..|...|.+.+.+.+|.+.|+.+++..|+..+|+.+..++.+.|+.++|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 5667777777777777666555555 56777888888888888888888777888888888888888888888888888
Q ss_pred HHHHHHHh
Q 046803 398 EVAEHLLS 405 (580)
Q Consensus 398 ~~~~~~~~ 405 (580)
+..++.+.
T Consensus 382 ~~r~e~L~ 389 (400)
T COG3071 382 QVRREALL 389 (400)
T ss_pred HHHHHHHH
Confidence 88888764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-09 Score=101.99 Aligned_cols=279 Identities=14% Similarity=0.122 Sum_probs=210.8
Q ss_pred CCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 046803 154 SNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVH 230 (580)
Q Consensus 154 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 230 (580)
.|++..|++...+-.+ .....|..-+.+--+.|+.+.+-.++.+.-+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5888888888876543 2344555556667778888888888888876422344445566666777888888888888
Q ss_pred HHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC-----------hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046803 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN-----------VIAWTAMISGYGMHGYGTEAVELFHRM 299 (580)
Q Consensus 231 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (580)
.++.+.+ +-++.+......+|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 6677888888889999999999988888887632 236777776666555555655667666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHH
Q 046803 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APA 378 (580)
Q Consensus 300 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 378 (580)
... .+-+...-.+++.-+...|+.++|.++.....++ +..|+.. ..-...+-++...-++..++.+...| ++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 543 4555666677888889999999999999888765 6666621 11223466777777777767776666 478
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 379 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.+.+|...|.+++.+.+|...++.+++..|+ ...|..++.+|.+.|+..+|.+.+++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8999999999999999999999999999987 688999999999999999999999987643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-10 Score=118.83 Aligned_cols=261 Identities=11% Similarity=0.003 Sum_probs=192.2
Q ss_pred ChhHHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHH---------hCCChHHHHHHHHHHHH
Q 046803 171 SVVAWNSMISGYEQ-----NGFAKEAIGLFNLMRDFGVNPDS-TTCVCVLAACA---------QLGDIDLGRWVHEFIVG 235 (580)
Q Consensus 171 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~~~~~~~~ 235 (580)
+...|...+.+-.. .+..++|+++|++..+. .|+. ..+..+..++. ..+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45566666665322 13467999999999874 5654 35555544443 22447899999999998
Q ss_pred cCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HH
Q 046803 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-TF 311 (580)
Q Consensus 236 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~ 311 (580)
.+ +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 86 66788889999999999999999999998775 3 4568888999999999999999999999984 45432 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHh
Q 046803 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKM 389 (580)
Q Consensus 312 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~ 389 (580)
..++..+...|++++|...++++.+. ..| +...+..+..+|...|++++|.+.+++..+..|+ ...++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34444566789999999999988753 234 4556777888999999999999999777777776 4446666667777
Q ss_pred cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 390 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
.| +.|...++++++..-..+.....+..+|.-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4888888887764422222233377788888888877776 7776653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-09 Score=102.47 Aligned_cols=220 Identities=12% Similarity=0.013 Sum_probs=177.1
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHH
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 260 (580)
.+.-.|+...|...|+..+.....++ ..|.-+..+|....+.++..+.|....+.+ +.++.+|.-=..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 34557899999999999988643322 237778888999999999999999999987 6678888888888888899999
Q ss_pred HHHHHHhccCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 261 AREIFDMMSEL---NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 261 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
|..=|++.... ++..|-.+..+..+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+..+.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999988763 4567777777778889999999999999875 444567888889999999999999999999873
Q ss_pred cCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 338 YGLLPG---------VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 338 ~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
+.|+ +.+--+++-.- -.+++..|.+++++++...|. ...+..|...-.+.|+.++|+++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333 11112222222 348999999999999999995 6779999999999999999999999987653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-09 Score=106.00 Aligned_cols=279 Identities=11% Similarity=0.036 Sum_probs=219.5
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 046803 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213 (580)
Q Consensus 137 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 213 (580)
...+..+.....+-+...+++.+..++++.+.+. +...+..-|..+...|+..+-..+=.++.+. .+-.+.+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3456666677777888899999999999988764 3456666778899999988888877888775 35567799999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-ChHHHHHHHHHHHhcCChH
Q 046803 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-NVIAWTAMISGYGMHGYGT 290 (580)
Q Consensus 214 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 290 (580)
.--|...|..++|+..+.+....+ +.-...|-.+...|+-.|.-++|...+....+ + .--.+--+.--|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 999999999999999999988765 44567888999999999999999988876543 1 1111222344577889999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-CC---CC-CHHHHHHHHHHHHHcCCHHHHH
Q 046803 291 EAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEY-GL---LP-GVEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~---~p-~~~~~~~li~~~~~~g~~~~A~ 364 (580)
.|.+.|.+... +.|+ ....+-+.-...+.+.+.+|..+|+.....- .+ .+ ...+++.|..+|.+.+++++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999998876 4554 4566666656667889999999999876311 11 11 3456888999999999999999
Q ss_pred HHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHH
Q 046803 365 KFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419 (580)
Q Consensus 365 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 419 (580)
..+++.+...| +..++.++.-.|...|+++.|+..|.+++.+.|+|..+-..|..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 99999998888 68999999999999999999999999999999998655554443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-11 Score=121.75 Aligned_cols=269 Identities=16% Similarity=0.177 Sum_probs=192.8
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC
Q 046803 193 GLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN 272 (580)
Q Consensus 193 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 272 (580)
.++..+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999998 9999998888999999999999999999887766 788
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
..+|+.|..+|.++|+... ++..++ -...+...++..|.-..-..++..+.-..+..||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999765 333332 122344455666665555566555433334445543 3555
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH-KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 431 (580)
.+.-.|.++.+++++ ..+|...-.......+.-+... ..+++-....+...+ . .++.+|..+...-..+|+.+.|.
T Consensus 148 llv~eglwaqllkll-~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~-~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLL-AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-A-PTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHH-hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-C-CChHHHHHHHHHHHhcCchhhHH
Confidence 666778888888888 5554322111111124433332 233444444444444 3 45889999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCCccccccccch
Q 046803 432 VVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVPESESAMHELEE 502 (580)
Q Consensus 432 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~ 502 (580)
.++..|+++|++-.+.+.|..+-| . +....++.+.+-|++.|+.|+..+...-+.+
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g--------~-------~~~q~~e~vlrgmqe~gv~p~seT~adyvip 280 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG--------I-------NAAQVFEFVLRGMQEKGVQPGSETQADYVIP 280 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc--------C-------ccchHHHHHHHHHHHhcCCCCcchhHHHHHh
Confidence 999999999999999999965432 1 2223445577889999999999876544433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-12 Score=86.71 Aligned_cols=50 Identities=30% Similarity=0.514 Sum_probs=47.9
Q ss_pred CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 046803 69 PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118 (580)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 118 (580)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-08 Score=103.22 Aligned_cols=399 Identities=11% Similarity=0.051 Sum_probs=261.6
Q ss_pred CCCChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhh-HHH
Q 046803 36 YGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYT-FSA 111 (580)
Q Consensus 36 ~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ 111 (580)
+.-|+.+|..|.-++...|+++.+.+.|++... .....|+.+-..|.-.|.-..|+.+.+.-......|+..+ +-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 456788899888888899999999999987543 3456799999999999999999999988655433354333 333
Q ss_pred HHHHHH-ccCChHHHHHHHHHHHHh--CC--CCchHHHHHHHHHHHhC-----------CCHHHHHHHHccCCCC---Ch
Q 046803 112 VIKSCA-HLSILNLGRAVHCHVFVS--GY--DSDLHVQAALVNFYAKS-----------NNVDVARKVFDRMPDK---SV 172 (580)
Q Consensus 112 ll~a~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~~~---~~ 172 (580)
.-..|. +.+..+++..+-.+++.. +. ...+..+-.+.-+|... ....++.+.+++..+. |.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 334443 457777777777777662 21 11233444444444322 1234556666655432 22
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
.+---+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|+.+.+.....- +.|......-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 22222333466778889999999888887656677888888888888889999988887776531 11211111112222
Q ss_pred hhcCCHHHHHHHHHhccC-------------------------------CCh-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSE-------------------------------LNV-IAWTAMISGYGMHGYGTEAVELFHRMR 300 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~-------------------------------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 300 (580)
..-++.++|......+.. .+. .++..+. +.++ -+...+..-.. |.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~se~~-Lp 634 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGSELK-LP 634 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhcccccc-cC
Confidence 224444444443322210 011 1111111 1111 00000000000 11
Q ss_pred hCCCC--CCH------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 301 AHGVR--PNN------VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 301 ~~g~~--pd~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
..-+. |+. ..+......+...+..++|...+.+..+ +.| ....|......+...|..++|.+.|..++
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 11112 221 2344455577788899999988888763 344 57777777888999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCchHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 372 GEKPA-PAVWTAMLGACKMHKNFDLGVE--VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 372 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
...|+ +.+..++...+...|+...|.. ++..+++++|.++.+|..|+.++-+.|+.++|.+.|....+..
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99996 7889999999999999998888 9999999999999999999999999999999999999887653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-09 Score=101.02 Aligned_cols=200 Identities=11% Similarity=0.066 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhH
Q 046803 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251 (580)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 251 (580)
...+..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+....+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456666777777777777777777766542 2234455555566666666666666666665543 3333444444445
Q ss_pred hhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 252 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
|...|++++|.+.|+ +.......| +...+..+..++...|++++|...
T Consensus 109 ~~~~g~~~~A~~~~~-------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQFE-------------------------------QAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHHH-------------------------------HHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555544 444321111 122334444455555666666666
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 046803 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406 (580)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 406 (580)
+++..+. .+.+...+..+...+...|++++|.+.+++.....| +...+..+...+...|+.++|....+.+.+.
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6555432 112344455555666666666666666655544333 3444555555566666666666665555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-10 Score=103.52 Aligned_cols=228 Identities=14% Similarity=0.137 Sum_probs=160.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc
Q 046803 176 NSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255 (580)
Q Consensus 176 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 255 (580)
+.|..+|.+.|.+.+|.+.|+.-.+. .|-+.||..+-++|.+...++.|..++.+-++. +|.|+.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788888999999998888887764 567778888888888888888888888887776 355555556666666666
Q ss_pred CCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046803 256 GNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332 (580)
Q Consensus 256 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 332 (580)
++.++|.++++...+ .|+.+..++..+|.-.++++-|+..|+++.+.|+. +...|..+.-+|...++++-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777666553 34445555555666666666666666666666654 44555555555555555555555444
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 333 SMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 333 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
+.... ...|+ ..+|..|.......||+..|.+.|+-.+..+|++
T Consensus 383 RAlst----------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 383 RALST----------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHhh----------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 44321 11222 4567777777777788888888888888888888
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 411 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
..+++.|+..-.+.|+.++|..++.......
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8888888888888888888888888876653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-09 Score=97.31 Aligned_cols=302 Identities=9% Similarity=-0.028 Sum_probs=210.8
Q ss_pred CChhhHHHHHHHHHc--cCChHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHH---HH
Q 046803 104 PSNYTFSAVIKSCAH--LSILNLGRAVHCHVFV-SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW---NS 177 (580)
Q Consensus 104 p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~---~~ 177 (580)
|+..+...-+.+++. .++...+.+.+..+.. .-++.|+....++..+|...|+.++|...|++...-|..+. ..
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 333344444444433 3444444444444433 33567788889999999999999999999988765443322 22
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCC
Q 046803 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257 (580)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 257 (580)
..-.+.+.|+.+....+...+.... +-....|..-+...-..++++.|..+-++.++.+ +.++..+-.-...+...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 2334567788888777777765431 1233334444444456678888888888888765 4455555555667778899
Q ss_pred HHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHH
Q 046803 258 VSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVL-SACA-HAGLVQEGHRVFA 332 (580)
Q Consensus 258 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~-~~g~~~~a~~~~~ 332 (580)
.++|.=.|+.... -+..+|.-|+..|...|...+|.-+-+...+. +.-+..+.+.+. ..|. ....-++|.++++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999987653 46789999999999999999998877765542 233445554442 2332 2233577888887
Q ss_pred HhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 333 SMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 333 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
+.. .+.|+ ....+.+...+.+.|+.++++.++++.+...||....+.|...+...+.+++|...|..+++++|++-
T Consensus 429 k~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 429 KSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 765 56676 55667788888999999999999988888889999999999999999999999999999999999863
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=83.48 Aligned_cols=50 Identities=28% Similarity=0.607 Sum_probs=46.5
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046803 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH 320 (580)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 320 (580)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999864
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-09 Score=109.42 Aligned_cols=335 Identities=12% Similarity=0.077 Sum_probs=150.8
Q ss_pred CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 046803 69 PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148 (580)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 148 (580)
||-+||..+|.-|+..|+.+.|- +|.-|.......+...|+.++.+....++.+.+. .|-..+|+.|.
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLL 90 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHH
Confidence 55566666666666666666555 6666655555555555666666555555555443 45555666666
Q ss_pred HHHHhCCCHHH---HHHHHccCCC-------CChh---------------HHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 046803 149 NFYAKSNNVDV---ARKVFDRMPD-------KSVV---------------AWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203 (580)
Q Consensus 149 ~~y~~~g~~~~---A~~~f~~~~~-------~~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 203 (580)
..|...||+.. .++.+..+.. .... .-...+....-.|.++.+++++..+....-
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 66666666543 1111111100 0000 001122222333444444444433322110
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC----hHHHHHH
Q 046803 204 NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN----VIAWTAM 279 (580)
Q Consensus 204 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~l 279 (580)
. . ++..+++-+... ..-.+++.......--.++..++.++++.-...|+++.|..++.+|.+.. ..-|-.|
T Consensus 171 ~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 171 N-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred c-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 0 0 111123322221 12223333332222114566666666666666666666666666666522 2222233
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHH
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFG 355 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~ 355 (580)
+-+ .++..-+..+++-|.+.|+.|+..|+...+..+...|....+.. |.+.+ ...+..+..+..
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e---------~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE---------GSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc---------ccchhhhhhHHHHHHHhcccH
Confidence 333 55555666666666666666666666665555555433222211 11111 111222222111
Q ss_pred HcCCHHH-----HHHHHHhHc--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH----hcCCCCcchHHHHHHHHHhc
Q 046803 356 RAGLLNE-----AYKFVKDVI--GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL----SVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 356 ~~g~~~~-----A~~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~p~~~~~~~~l~~~y~~~ 424 (580)
...+++. ....+++.+ ++.-...+|.... -...+|.-++.+++...+. +..|.+...|..+..-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 1111111 111111110 2222224443322 2334688888888877765 34466677777777777655
Q ss_pred CChhHHHHH
Q 046803 425 GRMDRVEVV 433 (580)
Q Consensus 425 g~~~~a~~~ 433 (580)
-+..-...+
T Consensus 393 ~e~~~~~~i 401 (1088)
T KOG4318|consen 393 IERHICSRI 401 (1088)
T ss_pred HHhhHHHHH
Confidence 433333333
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-09 Score=113.63 Aligned_cols=227 Identities=11% Similarity=0.029 Sum_probs=173.8
Q ss_pred ChhHHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhh---------hcCCHHHHHHHHHhccC-
Q 046803 206 DSTTCVCVLAACAQ-----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA---------RCGNVSKAREIFDMMSE- 270 (580)
Q Consensus 206 ~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~- 270 (580)
+...|...+.+-.. .+++++|.+.+++.++.. |.+...+..+..+|. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 34455555555322 234678999999999875 445666666665554 23458999999998875
Q ss_pred --CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHH
Q 046803 271 --LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEH 346 (580)
Q Consensus 271 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 346 (580)
.+..+|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++++.+ +.|+ ...
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~ 408 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAA 408 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhh
Confidence 35678888888999999999999999999984 455 45677788899999999999999999874 3454 223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCC-CC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEK-PA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 424 (580)
+..++..+...|++++|.+.+++.+... |+ +..+..+..++...|+.++|...++++....|.+......+...|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 3334555777899999999998777543 54 566778888899999999999999999888888888888888888888
Q ss_pred CChhHHHHHHHHHHhC
Q 046803 425 GRMDRVEVVRNIMIQK 440 (580)
Q Consensus 425 g~~~~a~~~~~~m~~~ 440 (580)
| +.|...++.+.+.
T Consensus 489 g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 489 S--ERALPTIREFLES 502 (553)
T ss_pred H--HHHHHHHHHHHHH
Confidence 8 4888878777653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-08 Score=99.15 Aligned_cols=227 Identities=12% Similarity=-0.017 Sum_probs=148.0
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHH
Q 046803 186 GFAKEAIGLFNLMRDFG-VNPD--STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262 (580)
Q Consensus 186 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 262 (580)
+..+.++.-+.+++... ..|+ ...|......+...|+.++|...|.+.++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 2222 2346666667778888888888888887765 556778888888888888888888
Q ss_pred HHHHhccC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 046803 263 EIFDMMSE--L-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG 339 (580)
Q Consensus 263 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 339 (580)
+.|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88887764 3 4567888888888889999999999888873 45443222222234456788899988876543 3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHH--HHHHHHHhHcCCC----C-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-c
Q 046803 340 LLPGVEHHVCMVDLFGRAGLLN--EAYKFVKDVIGEK----P-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN-P 411 (580)
Q Consensus 340 ~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~----p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~ 411 (580)
..|+...+ .++..+ .|++. ++.+.+.+..+.. | ....|..+...+.+.|++++|+..|+++++.+|.+ .
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 233333 44443 3333332222222 2 24578899999999999999999999999998753 3
Q ss_pred chHHHHHHH
Q 046803 412 GHYVMLSNI 420 (580)
Q Consensus 412 ~~~~~l~~~ 420 (580)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333334433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.1e-09 Score=106.24 Aligned_cols=232 Identities=14% Similarity=0.151 Sum_probs=171.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC-----C-CCCChhHH-HHHHHHHHhCCChHHHHHHHHHHHHc-----C--CC
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDF-----G-VNPDSTTC-VCVLAACAQLGDIDLGRWVHEFIVGQ-----G--LD 239 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~-----~--~~ 239 (580)
+...+...|...|++++|..+++...+. | ..|...+. ..+...|...+.+++|..+|+.+... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444777888888888888888777653 2 12343333 33666778888888888888887753 2 12
Q ss_pred CcHHHhhHHhhHhhhcCCHHHHHHHHHhccC----------CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCC
Q 046803 240 VNVVLATSLINMYARCGNVSKAREIFDMMSE----------LNV-IAWTAMISGYGMHGYGTEAVELFHRMRA---HGVR 305 (580)
Q Consensus 240 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~ 305 (580)
.-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..++++..+ .-+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2345567777789999999998888876542 222 2456677788899999999999987654 2233
Q ss_pred CCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc----C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHc----
Q 046803 306 PNN----VTFVAVLSACAHAGLVQEGHRVFASMRQEY----G-LLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVI---- 371 (580)
Q Consensus 306 pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~---- 371 (580)
++. .++..|...|.+.|++++|.++|+++.+.. + ..+. -..++.|...|.+.+++.+|.++|.+..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 333 478899999999999999999999987653 1 1222 5567889999999999999999997765
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 372 ---GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 372 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
+..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33455 56799999999999999999999998873
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=99.39 Aligned_cols=197 Identities=11% Similarity=0.115 Sum_probs=164.9
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHH
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV-AVLSA 317 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~ll~a 317 (580)
|..--+.+..+|.+.|.+.+|++.|+...+ |-+.||-.|-.+|.+..+++.|+.+|.+-.+ ..|-.+||. .....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHH
Confidence 334446788999999999999999987763 7788999999999999999999999999887 467777765 45567
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a 396 (580)
+-..++.++|.++|+...+. -+.+++...|+...|.-.++++-|+.+|++.+.... ++..|+.+.-.|.-.+++|.+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 88889999999999999863 334678888888999999999999999988775543 688999999999999999999
Q ss_pred HHHHHHHHhcC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 397 VEVAEHLLSVE--PE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 397 ~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+..|++++... |+ -...|..|+.+....|++..|.+-|+.....+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999998654 32 35689999999999999999999998876554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.7e-07 Score=84.65 Aligned_cols=282 Identities=11% Similarity=0.029 Sum_probs=206.1
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH-HHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHH
Q 046803 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC-VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248 (580)
Q Consensus 170 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 248 (580)
.|+.....+...+...|+.++|+..|++.+. +.|+..+- -.-.-.+...|+.+....+...+.... ......|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 3777888999999999999999999998875 34544321 111222356788888887777776543 1222223233
Q ss_pred hhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 046803 249 INMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLV 324 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~ 324 (580)
.......++++.|..+-++..+ +++..+-.-...+.+.|+.++|.-.|+..+. +.| +...|..|+..|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 3344556788888888887765 4455555556778899999999999999887 444 568999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHH
Q 046803 325 QEGHRVFASMRQEYGLLPGVEHHVCMV-DLFG-RAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAE 401 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 401 (580)
.+|.-+-+...+. +..+..+.+.+. ..+. .-..-++|..++++.+.++|+ ....+.+...|...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9998887776653 333444444332 2222 122347899999999999998 6677888899999999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHH
Q 046803 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELM 481 (580)
Q Consensus 402 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 481 (580)
+.+...|+ ....+.|++.+...+.+.+|...|..... ..|+.+...+-++.|.
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHH
Confidence 99988887 47888999999999999999999887755 3466777777777766
Q ss_pred HHHH
Q 046803 482 GRCR 485 (580)
Q Consensus 482 ~~m~ 485 (580)
++|+
T Consensus 516 K~~~ 519 (564)
T KOG1174|consen 516 KSDD 519 (564)
T ss_pred hccC
Confidence 6655
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-09 Score=105.22 Aligned_cols=220 Identities=13% Similarity=0.076 Sum_probs=180.2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHH
Q 046803 218 AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVE 294 (580)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 294 (580)
.+.|++.+|.-.|+..++.+ |.+...|--|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 57788999999999999886 77888999999999999999999999988875 456777788888999999999999
Q ss_pred HHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 046803 295 LFHRMRAHGVR--------PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366 (580)
Q Consensus 295 ~~~~m~~~g~~--------pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 366 (580)
.+++-+....+ ++..+-.. ....+...+....++|-.+....+..+|..++.+|.-.|.-.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99988664211 00000000 111222334556667777766667668888999999999999999999999
Q ss_pred HHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 367 VKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 367 ~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
|+.++..+| |..+||-|...++...+.++|+..|.+++++.|.-..+...|+..|...|.+++|.+.|-..+..
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999999 58889999999999999999999999999999999999999999999999999999998876653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-07 Score=90.76 Aligned_cols=384 Identities=9% Similarity=0.028 Sum_probs=244.3
Q ss_pred HhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCChHHH
Q 046803 50 VCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNY-TFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 50 ~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a 125 (580)
++.+|+-++|......... ++.+.|..+.-.+....++++|+.+|+..... .||.. .+.-+.---++.++++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhH
Confidence 4567788888887765443 57788999988888889999999999998874 45544 344333333466777777
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC-----CChhHHHH------HHHHHHhCCChhHHHHH
Q 046803 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-----KSVVAWNS------MISGYEQNGFAKEAIGL 194 (580)
Q Consensus 126 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~------li~~~~~~g~~~~A~~~ 194 (580)
...-.+.++.. +.....|..+.-++.-.|+...|..+.+...+ ++...+.- ......++|..++|++.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 66666666543 34556777788888888899988888766542 33332222 22345677888888888
Q ss_pred HHHHHHCCCCCChhHH-HHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHH-HHHHhccCC-
Q 046803 195 FNLMRDFGVNPDSTTC-VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR-EIFDMMSEL- 271 (580)
Q Consensus 195 ~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~- 271 (580)
+..-... ..|...+ ..-...+.+.+++++|..++..++... |.+...|-.+..++.+-.+.-++. .+|....+.
T Consensus 208 L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 208 LLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 7765432 2233322 334556678889999999999988875 444444555556665443434444 555554431
Q ss_pred -ChHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhHHh--c-----
Q 046803 272 -NVIAWTAMISGYGM-HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE----GHRVFASMRQE--Y----- 338 (580)
Q Consensus 272 -~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~--~----- 338 (580)
-...-..+--.... ..-.+..-.++..+.+.|++|-...+.++ |-.-...+- +..+...+... +
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence 00000000001111 12233445566777778877543333333 222111111 11222221100 0
Q ss_pred C--CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 339 G--LLPGV--EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 339 ~--~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
+ -+|.. .++-.++..+-+.|+++.|..+++.+++-.|. +..|..-...+...|++++|...++++.+++-.|...
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 0 13543 34556788899999999999999999998897 5567777888999999999999999999998665544
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 414 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
-..-+.-..++.+.++|.++.....+.|.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 44567777899999999999998877664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-06 Score=84.14 Aligned_cols=395 Identities=13% Similarity=0.109 Sum_probs=210.0
Q ss_pred chHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHH--HH--HHHcCCCccHHHHHHHHH
Q 046803 22 KPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTL--II--RNSKANFSTDSLLFYRRM 97 (580)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~l--i~--~~~~~g~~~~A~~~~~~m 97 (580)
+.+.+.-..++..+-.+.......++ ++.+...+++|+++.+.-..- .+++.. =. +..+.+..++|+..+.
T Consensus 29 e~a~k~~~Kil~~~pdd~~a~~cKvV-alIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~-- 103 (652)
T KOG2376|consen 29 EEAVKTANKILSIVPDDEDAIRCKVV-ALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK-- 103 (652)
T ss_pred HHHHHHHHHHHhcCCCcHhhHhhhHh-hhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh--
Confidence 45555555565555333233344444 666888888888766543321 122222 22 3346778888888877
Q ss_pred HHCCCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHH
Q 046803 98 IVSNISPSN-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDS-DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAW 175 (580)
Q Consensus 98 ~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 175 (580)
|..++. .+...-...|-+.+++++|..+|+.+.+.+.+. +...-..++.+-. .-.+. +.+..+.....+|
T Consensus 104 ---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 104 ---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEVPEDSY 175 (652)
T ss_pred ---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCCCcchH
Confidence 333332 244445556778888888888888887765321 1111111111111 00111 2222222222222
Q ss_pred HH---HHHHHHhCCChhHHHHHHHHHHHCCC-------------CCChh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 046803 176 NS---MISGYEQNGFAKEAIGLFNLMRDFGV-------------NPDST-TCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238 (580)
Q Consensus 176 ~~---li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 238 (580)
.. ....++..|++.+|+++++...+.+. .-+.. .-.-+.-++-..|+.++|.+++..+++...
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 22 23344556666666666665522110 00000 111122333445666666666666665542
Q ss_pred CCcH----HHhhHHhhHhhh---------------------------------------------cCCHHHHHHHHHhcc
Q 046803 239 DVNV----VLATSLINMYAR---------------------------------------------CGNVSKAREIFDMMS 269 (580)
Q Consensus 239 ~~~~----~~~~~li~~y~~---------------------------------------------~g~~~~A~~~~~~~~ 269 (580)
+|. ...|.|+.+-.. .+..+.+.++-...+
T Consensus 256 -~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 256 -ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred -CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 221 122222221111 122233333333333
Q ss_pred CCC-hHHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--------HhHH
Q 046803 270 ELN-VIAWTAMISGY--GMHGYGTEAVELFHRMRAHGVRPNN--VTFVAVLSACAHAGLVQEGHRVFA--------SMRQ 336 (580)
Q Consensus 270 ~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~ 336 (580)
... ...+..++... .+.....+|.+++...-+. .|+. ......+......|+++.|.+++. .+.+
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 211 12233333322 2223466777777766653 3333 444555667788999999999998 4432
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc-------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 046803 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI-------GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
.+..|. +...++..+.+.++-+.|.+++.+++ .-.+. ..+|.-+...-.++|+-++|...++++++.+|
T Consensus 413 -~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 413 -AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred -hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 233444 44557888888887666666555544 33332 33455555555778999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 409 ENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 409 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
++..+...++.+|++. +.+.|..+-+.
T Consensus 490 ~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 490 NDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred chHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999987 56666665443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-08 Score=97.55 Aligned_cols=213 Identities=14% Similarity=0.053 Sum_probs=156.4
Q ss_pred CChHHHHHHHHHHHHcC-CCC--cHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHH
Q 046803 221 GDIDLGRWVHEFIVGQG-LDV--NVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVE 294 (580)
Q Consensus 221 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 294 (580)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566677777777542 222 245688888899999999999999998874 457899999999999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC
Q 046803 295 LFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373 (580)
Q Consensus 295 ~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 373 (580)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.+.+....
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 4565 467788888899999999999999998753 454322222223345678899999999665533
Q ss_pred -CCCHHHHHHHHHHHHhcCCchHHHHHHHHHH-------hcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 374 -KPAPAVWTAMLGACKMHKNFDLGVEVAEHLL-------SVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 374 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
.|+. |. ........|+...+ ..++.+. ++.|..+.+|..|+.+|.+.|++++|...|++..+.++
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332 32 12333445666554 3444444 44566678999999999999999999999999987553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-08 Score=88.72 Aligned_cols=163 Identities=15% Similarity=0.130 Sum_probs=135.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVD 352 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 352 (580)
+...|.-+|.+.|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+... .+.| +-.+.|...-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 3445677888999999999999998884 4554 577788888999999999999999887 4455 4778888889
Q ss_pred HHHHcCCHHHHHHHHHhHc--CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 046803 353 LFGRAGLLNEAYKFVKDVI--GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 429 (580)
.+|..|++++|...|++++ |.-|. ..+|..+..+..+.|+.+.|...+++.++.+|+++.....+.....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999998887 33332 67788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 046803 430 VEVVRNIMIQKGL 442 (580)
Q Consensus 430 a~~~~~~m~~~~~ 442 (580)
|...++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999988876543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.7e-08 Score=98.35 Aligned_cols=149 Identities=10% Similarity=0.119 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-------------CCCCCH--HHHHHHHHHHH
Q 046803 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEY-------------GLLPGV--EHHVCMVDLFG 355 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~--~~~~~li~~~~ 355 (580)
.+...+..+...|+++ +|+.|-..|......+-..+++....... .-.|.. .++.-+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4455566666777654 44444444554444444444444443221 112343 34456678888
Q ss_pred HcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 046803 356 RAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 434 (580)
+.|++++|++++++++...|. +..|..-...+...|++++|.+.++.+.++++.|...-...+..+.++|+.++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999889988896 7788888999999999999999999999999998877778888889999999999999
Q ss_pred HHHHhCCC
Q 046803 435 NIMIQKGL 442 (580)
Q Consensus 435 ~~m~~~~~ 442 (580)
......+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98876665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-07 Score=90.66 Aligned_cols=375 Identities=12% Similarity=0.095 Sum_probs=241.1
Q ss_pred hchHHHHHhccCChhHHHHHHccC---CCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHc
Q 046803 43 LTKLLSLVCDAGFITYAQRIFFCI---PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSN-YTFSAVIKSCAH 118 (580)
Q Consensus 43 ~~~ll~~~~~~~~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 118 (580)
.|+.. ..|+++.|...|-.. .++|.+-|..-..+|+..|++++|++=-.+-++ +.|+. -.|+..-.++.-
T Consensus 9 gnaa~----s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 9 GNAAF----SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFG 82 (539)
T ss_pred HHhhc----ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHh
Confidence 45555 888999999999754 347888999999999999999999887666655 45554 358888888889
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHcc------CCC-C------ChhHHHHHHHHHHhC
Q 046803 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR------MPD-K------SVVAWNSMISGYEQN 185 (580)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~------~~~-~------~~~~~~~li~~~~~~ 185 (580)
.|++++|...|..-++.. +.+...++-|.+++.. + ..+.+.|.. +.. | ....|..++..+-++
T Consensus 83 lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~--~-~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLE--D-YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred cccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhH--H-HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 999999999999888775 5567778888888711 1 111222211 000 0 112333333332221
Q ss_pred ----------CChhHHHHHHHHH-----HHCC-------CCC------------C----------hhHHHHHHHHHHhCC
Q 046803 186 ----------GFAKEAIGLFNLM-----RDFG-------VNP------------D----------STTCVCVLAACAQLG 221 (580)
Q Consensus 186 ----------g~~~~A~~~~~~m-----~~~g-------~~p------------~----------~~t~~~ll~a~~~~~ 221 (580)
.+...|.-.+... ...| ..| | ..-...+.++..+..
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 1111121111110 0001 111 0 011344555666666
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChH----------HHHHHHHHHHhcCChHH
Q 046803 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI----------AWTAMISGYGMHGYGTE 291 (580)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~ 291 (580)
+++.+.+-+....... .+..-++....+|...|.+.+....-....+.... +...+..+|.+.++++.
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 7777777777777664 55666677777787777777766665554432211 12223445666677888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhH
Q 046803 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV-EHHVCMVDLFGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 292 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 370 (580)
|+..|.+....-..||.. .+....+++........ -+.|.. .-...-...+.+.|++.+|+..|.++
T Consensus 317 ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 888888766544444322 12223333333333321 233432 11122356677899999999999999
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 371 IGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 371 ~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+...| |...|..-..+|.+.|++..|+.-.+..++++|+....|..=+.++....+|+.|.+.|.+..+.+
T Consensus 385 Ikr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 385 IKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98888 588899999999999999999999999999999999999998999999999999999998877654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.8e-06 Score=81.86 Aligned_cols=214 Identities=14% Similarity=0.152 Sum_probs=138.2
Q ss_pred CChHHHHHHHHHHHHcCCCC------cHHHhhHHhhHhhhcCCHHHHHHHHHhccCCCh-------HHHHHHHHHHHhcC
Q 046803 221 GDIDLGRWVHEFIVGQGLDV------NVVLATSLINMYARCGNVSKAREIFDMMSELNV-------IAWTAMISGYGMHG 287 (580)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g 287 (580)
|+..+-...+.++++. +.| -...|..+.+.|-..|+++.|+.+|++..+-+- .+|..-...=.++.
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4455555666666654 122 235677889999999999999999999886332 35555556666788
Q ss_pred ChHHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 046803 288 YGTEAVELFHRMRAHGVR----------P-------NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350 (580)
Q Consensus 288 ~~~~A~~~~~~m~~~g~~----------p-------d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 350 (580)
+++.|++++++....--. | ....|...+..--..|-++....+|+++..-.-..|. .....
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~Ny 517 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINY 517 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHH
Confidence 899999988876542111 1 1122333344444567788888888888743222333 22233
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCC--CC-HHHHHHHHHHHHh-c--CCchHHHHHHHHHHhcCCCCc--chHHHHHHHHH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEK--PA-PAVWTAMLGACKM-H--KNFDLGVEVAEHLLSVEPENP--GHYVMLSNIYA 422 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~ll~~~~~-~--g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~y~ 422 (580)
...+-...-++++.++|++.++.- |+ ..+|+..+.-+.+ . ...+.|..+|+++++.-|+.. ..|...+..=.
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 444556778899999998888553 34 4678877765543 2 378999999999999776422 23333344444
Q ss_pred hcCChhHHHHHHHHH
Q 046803 423 LAGRMDRVEVVRNIM 437 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m 437 (580)
+-|.-..|..++++.
T Consensus 598 e~GLar~amsiyera 612 (835)
T KOG2047|consen 598 EHGLARHAMSIYERA 612 (835)
T ss_pred HhhHHHHHHHHHHHH
Confidence 567777788877774
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.2e-08 Score=93.46 Aligned_cols=249 Identities=8% Similarity=0.035 Sum_probs=163.9
Q ss_pred HHhCCCHHHHHHHHccCCCC----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHH
Q 046803 151 YAKSNNVDVARKVFDRMPDK----SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 226 (580)
+.-.|++..++.-.+ .... +.....-+.++|...|+++.++ .+..... .|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777775444 2111 2234455677888888877554 3333322 56665655555555443444444
Q ss_pred HHHHHHHHHcCCC-CcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 046803 227 RWVHEFIVGQGLD-VNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305 (580)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 305 (580)
..-+......... .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444333322222 33444444456778889999999988775 56667777888999999999999999999873 3
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHH
Q 046803 306 PNNVTFVAVLSACAH----AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVW 380 (580)
Q Consensus 306 pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 380 (580)
.| .+...+..++.. ...+.+|..+|+++.. ...+++.+.+.+.-+....|++++|.+++++++...|+ +.++
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 34 445555554433 3468999999999875 44578888899999999999999999999999988884 7788
Q ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHhcCCCCc
Q 046803 381 TAMLGACKMHKNF-DLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 381 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 411 (580)
..++......|+. +.+.+.+.++....|+.+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 8888888888877 677888888888888754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-06 Score=89.97 Aligned_cols=283 Identities=11% Similarity=0.029 Sum_probs=147.6
Q ss_pred HHHhCCCHHHHHHHHccCCC--CChh-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH----h--C
Q 046803 150 FYAKSNNVDVARKVFDRMPD--KSVV-AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA----Q--L 220 (580)
Q Consensus 150 ~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~--~ 220 (580)
.+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|+.+++. .|+...|...+..+. . .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccccc
Confidence 34556666666666655433 2332 3334455566666666666666666654 244444444333333 1 1
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHH-HHHHHHHhccCCCh-HHHHHHHHHHHhcCChHHHHHHHHH
Q 046803 221 GDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS-KAREIFDMMSELNV-IAWTAMISGYGMHGYGTEAVELFHR 298 (580)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 298 (580)
.+.+...++++.+...- |.......+.-.+.....+. .+...+..+..+.+ .+++.+-..|.......-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 13444555555554432 11111111111111111111 22222233333333 3344444444433333333344443
Q ss_pred HHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHH
Q 046803 299 MRAH----G----------VRPNN--VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLN 361 (580)
Q Consensus 299 m~~~----g----------~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 361 (580)
.... + -.|.. .++..+...|.+.|++++|.++.++.+. ..|+ +..|..-...|-+.|+++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHH
Confidence 3221 1 12222 2334455566777888888888877764 2454 677777777788888888
Q ss_pred HHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC--CCC-------cchHHHHHHHHHhcCChhHHH
Q 046803 362 EAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVE--PEN-------PGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 362 ~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~y~~~g~~~~a~ 431 (580)
+|.+.++.+-...+ |-.+-+-....+.+.|++++|.+.+....+.+ |.. ......-+.+|.+.|++..|.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88887766666655 44555555666677788888887777766544 211 011234577788888888888
Q ss_pred HHHHHHHh
Q 046803 432 VVRNIMIQ 439 (580)
Q Consensus 432 ~~~~~m~~ 439 (580)
+-|..+.+
T Consensus 326 k~~~~v~k 333 (517)
T PF12569_consen 326 KRFHAVLK 333 (517)
T ss_pred HHHHHHHH
Confidence 77666543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-07 Score=81.47 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=144.9
Q ss_pred hhHHhhHhhhcCCHHHHHHHHHhccCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh
Q 046803 245 ATSLINMYARCGNVSKAREIFDMMSEL---NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAH 320 (580)
Q Consensus 245 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~ 320 (580)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++.... .|+. ...|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHh
Confidence 334556788888888888888877753 3457778888888888888888888888773 4443 556666666777
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEV 399 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 399 (580)
.|.+++|.+.|+.........--..+|..++-+-.++|+++.|.+.|++.+...|+ +.+...+.......|++..|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888888765333223567777777778888888888888888877775 66777788888888888888888
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 400 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+++.....+.........+.+-...|+.+.+.+.=..+..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888877776677777777778888888877776665544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-06 Score=80.40 Aligned_cols=313 Identities=12% Similarity=0.067 Sum_probs=175.5
Q ss_pred ChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHH---HHHHccCChHHHHHHHHHHHHhCCCCchHHH-H
Q 046803 70 DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVI---KSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ-A 145 (580)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~ 145 (580)
++.-.--+-..+.-+|++.+|+.-|...++. |+..|-.+. ..|...|+-..|..-+..+++. .||-..- -
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3334445566677778888888888777653 333333332 3455667777777777777664 4443221 1
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHH
Q 046803 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225 (580)
Q Consensus 146 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 225 (580)
--...+.+.|.++.|..-|+.+.+.+.. -+....++.+.-..++-. .....+..+...|+...
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQN 173 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhh
Confidence 1234566777777777777766543221 001111111111111111 11223334455677778
Q ss_pred HHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046803 226 GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS---ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302 (580)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 302 (580)
+......+++.. +-|...+..-..+|...|++..|+.=++... ..+..+.--+-..+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK- 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK- 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-
Confidence 888888777764 5677777777888888888888876555443 45666666777777888888888888887776
Q ss_pred CCCCCHHHHH----HH---------HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHH
Q 046803 303 GVRPNNVTFV----AV---------LSACAHAGLVQEGHRVFASMRQEYGLLPG-----VEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 303 g~~pd~~t~~----~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~ 364 (580)
+.||....- .| +......+.|.++.+-.+...+. .|. ...+..+-..+...|++.+|+
T Consensus 252 -ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 252 -LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred -cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHH
Confidence 566653211 11 01122334444444444444321 222 122233344455556666666
Q ss_pred HHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 365 KFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 365 ~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
+...+.+.+.|| +.++.-=..+|.....++.|+.-|+.+.+.+++|.
T Consensus 328 qqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 328 QQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 666666666664 55555555666666666666666666666666553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-05 Score=80.95 Aligned_cols=160 Identities=12% Similarity=0.194 Sum_probs=101.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--
Q 046803 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN------VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-- 343 (580)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-- 343 (580)
++..|..-... ..|+..+-...|.+..+. +.|-. ..|..+...|-..|+++.|+.+|++..+. ..+.-
T Consensus 348 nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~d 423 (835)
T KOG2047|consen 348 NVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVED 423 (835)
T ss_pred cHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHH
Confidence 34455443333 356677777777777663 44422 34667777788888888888888887642 22211
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHhHc--CCCC-----------------CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 344 -VEHHVCMVDLFGRAGLLNEAYKFVKDVI--GEKP-----------------APAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 344 -~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~p-----------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
..+|....++=.+..+++.|+++++++. |..| +..+|...+..--..|-++....+|+++
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4556666677777888888888887665 2211 1234666666666667777777777777
Q ss_pred HhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 046803 404 LSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 404 ~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
+++.--.|......+..+....-++++.++++
T Consensus 504 idLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77765556666666666666666666666665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-06 Score=84.10 Aligned_cols=257 Identities=11% Similarity=-0.065 Sum_probs=132.8
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFGVNPDS-TTCVCVLAACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 255 (580)
.+...|++++|.+.+++..+. .|+. ..+.. ...+.. .+..+.+.+.+.. .....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 445566667777766666553 2322 22221 112222 2333333333332 1111122233444555666677
Q ss_pred CCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHH
Q 046803 256 GNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV-RPNN--VTFVAVLSACAHAGLVQEGHR 329 (580)
Q Consensus 256 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~--~t~~~ll~a~~~~g~~~~a~~ 329 (580)
|++++|.+.+++..+ .+...+..+...|...|++++|...+++...... .|+. ..+..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777776653 3345566666777777777777777776665321 1222 233455566677777777777
Q ss_pred HHHHhHHhcCCCCCHHHH-H--HHHHHHHHcCCHHHHHHH---HHhHcCCCC---CHHHHHHHHHHHHhcCCchHHHHHH
Q 046803 330 VFASMRQEYGLLPGVEHH-V--CMVDLFGRAGLLNEAYKF---VKDVIGEKP---APAVWTAMLGACKMHKNFDLGVEVA 400 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~ 400 (580)
+++.........+..... + .++.-+...|..+.+.+. .....+..| ..........++...|+.+.|..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777764211111111111 1 222222333322222221 111111101 1122234556667778888888888
Q ss_pred HHHHhcC-C--------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 401 EHLLSVE-P--------ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 401 ~~~~~~~-p--------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+.+.... . .........+.++...|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8776422 1 123445567778889999999999999887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-05 Score=79.38 Aligned_cols=305 Identities=14% Similarity=0.145 Sum_probs=176.2
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHH
Q 046803 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS-TTCV 211 (580)
Q Consensus 136 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 211 (580)
.+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+...|...|....|+.+++.-....-.|+. ..+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3456778888888888888888888888887654 24457888888888888888888887766543222433 2333
Q ss_pred HHHHHHH-hCCChHHHHHHHHHHHH--------------------------------------------------cCCCC
Q 046803 212 CVLAACA-QLGDIDLGRWVHEFIVG--------------------------------------------------QGLDV 240 (580)
Q Consensus 212 ~ll~a~~-~~~~~~~a~~~~~~~~~--------------------------------------------------~~~~~ 240 (580)
..-..|. +.+..+++..+-.+++. .+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3333332 33445555444444433 22 22
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhcc----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC---------
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMS----ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH-GVRP--------- 306 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p--------- 306 (580)
|+.+.-.+.--|+..++++.|.+...+.. ..++..|..+.-.+...+++.+|+.+.+..... |..-
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 22222223333555566666666555443 245566666666666667777777766655432 1100
Q ss_pred -----C----HHHHHHHHHHHHh---------c--------------CCHHHHHHHHHHhH-------HhcC--------
Q 046803 307 -----N----NVTFVAVLSACAH---------A--------------GLVQEGHRVFASMR-------QEYG-------- 339 (580)
Q Consensus 307 -----d----~~t~~~ll~a~~~---------~--------------g~~~~a~~~~~~~~-------~~~~-------- 339 (580)
| ..|...++...-. . ++..++.+...++. +..+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0 0111111111110 0 00011111110000 0001
Q ss_pred -CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 340 -LLPG--------VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 340 -~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
..|+ ...|....+.+.+.+..++|...+.++-.+.| .+..|......+...|..++|.+.|..++.++|+
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 1111 12334455667777777788766667666666 4666777777778888889999999999999999
Q ss_pred CcchHHHHHHHHHhcCChhHHHH--HHHHHHhCC
Q 046803 410 NPGHYVMLSNIYALAGRMDRVEV--VRNIMIQKG 441 (580)
Q Consensus 410 ~~~~~~~l~~~y~~~g~~~~a~~--~~~~m~~~~ 441 (580)
++.....++.++.+.|+..-|.. ++..+.+.+
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 98899999999999888777777 777777654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-05 Score=73.80 Aligned_cols=289 Identities=13% Similarity=0.062 Sum_probs=171.0
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCCC--ChhHHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC-
Q 046803 146 ALVNFYAKSNNVDVARKVFDRMPDK--SVVAWNS-MISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG- 221 (580)
Q Consensus 146 ~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~- 221 (580)
+|.++....-.+++|++++.++... +-...|. +.-+|.+...++-+.+++.-..+. -||+ |+..=+.+|..-.
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl 232 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRL 232 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhh
Confidence 3444444445688888888887653 3344444 344677788888888887777664 3443 2222233332211
Q ss_pred -ChHHHHHH--------------HHHHHHcCC------------CC-----cHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 222 -DIDLGRWV--------------HEFIVGQGL------------DV-----NVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 222 -~~~~a~~~--------------~~~~~~~~~------------~~-----~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
+-..|.+- .+.+.+.++ -| -+..--.|+--|.+.+++++|..+.+.+.
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC
Confidence 11111111 111222111 01 11223345666889999999999988886
Q ss_pred CCChHHHHHHHHHHHhcCC-------hHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 046803 270 ELNVIAWTAMISGYGMHGY-------GTEAVELFHRMRAHGVRPNNVT-FVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341 (580)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 341 (580)
..++.-|-.-.-.++..|+ ..-|.+.|+-.-+++..-|.+. --++.+++.-..++++...+++.+.. +=..
T Consensus 313 PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~N 391 (557)
T KOG3785|consen 313 PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTN 391 (557)
T ss_pred CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Confidence 5555444333333444443 4455555655444554444322 22344444555678888888888864 3344
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC-CCHHHHHHH-HHHHHhcCCchHHHHHHHHHHhcC-CCC-cchHHHH
Q 046803 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-PAPAVWTAM-LGACKMHKNFDLGVEVAEHLLSVE-PEN-PGHYVML 417 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l 417 (580)
.|...+| +..+++..|.+.+|+++|-+.-+.+ .|..+|.++ ...|.+.+.++.|..++- +.+ |.+ ......+
T Consensus 392 dD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlI 467 (557)
T KOG3785|consen 392 DDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLI 467 (557)
T ss_pred cchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHH
Confidence 4555554 8899999999999999995544433 356666655 456688889988876654 333 332 2344566
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 418 SNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
++-+.+++.+--|.+.|+.+...+.
T Consensus 468 An~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 468 ANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHHHHHHHHHHhhhHHHccCC
Confidence 7889999999999999998876543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-07 Score=90.18 Aligned_cols=246 Identities=12% Similarity=0.067 Sum_probs=165.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHH
Q 046803 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259 (580)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 259 (580)
+-+.-.|++..++.-.+ .....-..+......+.+++..+|..+.+ ..++.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34555788888886655 22221122334566678888888886643 34444444 666666666665555545666
Q ss_pred HHHHHHHhcc-CC---ChHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 260 KAREIFDMMS-EL---NVIAWTA-MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 260 ~A~~~~~~~~-~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
.+..-++... ++ +-.++.. ....+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665443 22 1122222 224456679999999988653 35566677888999999999999999999
Q ss_pred HHhcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHhHcCC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 335 RQEYGLLPGVE---HHVCMVDLFGRAGLLNEAYKFVKDVIGE-KPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 335 ~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
. .+..|.. ...+.+..+.-.+.+.+|..+|++.... .+++.+.+.+..+....|++++|+.+++++++.+|.+
T Consensus 158 ~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 158 Q---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp H---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred H---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 6 3445532 2333444444445799999999776543 4678889999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 046803 411 PGHYVMLSNIYALAGRM-DRVEVVRNIMIQ 439 (580)
Q Consensus 411 ~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~ 439 (580)
+.+...++.+....|+. +.+.+.+..++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999998 667788888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-07 Score=98.06 Aligned_cols=201 Identities=14% Similarity=0.160 Sum_probs=173.6
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSE--------LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 310 (580)
|-+...|-..|......+++++|++++++... .-...|.++++.-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44566788888888889999999999988763 23458999998888889889999999999874 222456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---HHHHHHHHHHH
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---PAVWTAMLGAC 387 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~ll~~~ 387 (580)
|..|...|.+.+..++|.++++.|.++++ -....|..+++.+.+.++-++|.+++.+++..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999776 56778999999999999999999999999966664 45566677777
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
.++|+.+++..+|+..+.-.|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999988765
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-05 Score=79.06 Aligned_cols=197 Identities=12% Similarity=-0.062 Sum_probs=118.4
Q ss_pred hhhHHHHHHHHHcCCCccHHHHHHHHHHHCCC-CCChhhHHH-HHHHHHccCChHHHHHHHHHHHHhCCCCchHHHH---
Q 046803 71 SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI-SPSNYTFSA-VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQA--- 145 (580)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--- 145 (580)
...|..+...+...|+++++...+....+... .++...... ....+...|+++++.+.++.+++.. +.|...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 34566666677777888887776666554321 222222211 1223456788888988888888764 33444443
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC
Q 046803 146 ALVNFYAKSNNVDVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222 (580)
Q Consensus 146 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 222 (580)
.+.......+..+.+.+.++..... ....+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 1222222345566666666543222 22344455567778888888888888887753 3344566677777778888
Q ss_pred hHHHHHHHHHHHHcCC-CCcH--HHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 223 IDLGRWVHEFIVGQGL-DVNV--VLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 223 ~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
+++|...+....+... .++. ..+..+...+...|++++|.++|++..
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 8888888877776531 1222 234456677777777777777777754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-06 Score=76.53 Aligned_cols=372 Identities=12% Similarity=0.016 Sum_probs=233.1
Q ss_pred ccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHH-HHHHHHccCChHHHHH
Q 046803 52 DAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA-VIKSCAHLSILNLGRA 127 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~ 127 (580)
+..++++|.+++..-.+ ++....+.|...|.+..++..|-.+|+++-.. .|...-|.. -..++-+.+.+..|..
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 88899999999876554 35566778888899999999999999998663 455444432 2344556778888888
Q ss_pred HHHHHHHhCCCCchHHHHHHH----HHHHhCCCHHHHHHHHccCCC-CChhHHHHHHHHHHhCCChhHHHHHHHHHHHC-
Q 046803 128 VHCHVFVSGYDSDLHVQAALV----NFYAKSNNVDVARKVFDRMPD-KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF- 201 (580)
Q Consensus 128 ~~~~~~~~g~~~~~~~~~~li----~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 201 (580)
+...|... ....+..+ ......+++..++.+.++.+. .+..+.+.......+.|++++|++-|+...+-
T Consensus 100 V~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 100 VAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 87777432 12222111 223456889999999999984 56667777777778999999999999988765
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-------------c---------------HHHhhHHhhHhh
Q 046803 202 GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV-------------N---------------VVLATSLINMYA 253 (580)
Q Consensus 202 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~li~~y~ 253 (580)
|.. ....|+..+.. .+.++.+.|.....+++++|+.. | +..+|.-...+.
T Consensus 175 Gyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 175 GYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred CCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 444 44567665544 46789999999999999886521 1 122333344567
Q ss_pred hcCCHHHHHHHHHhccC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046803 254 RCGNVSKAREIFDMMSE-----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 328 (580)
+.|+.+.|.+.+..|+. .|++|...+.-.= ..+++.+..+-++-+.+... -...||..++-.|++..-++.|-
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHH
Confidence 88999999999999984 4677766554322 24555555555555555433 34578999999999998888888
Q ss_pred HHHHHhHHhcCCC-CCHHHHHHHHHHHH-HcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCC---chHHHHHHHH
Q 046803 329 RVFASMRQEYGLL-PGVEHHVCMVDLFG-RAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKN---FDLGVEVAEH 402 (580)
Q Consensus 329 ~~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~ 402 (580)
.++.+-... ... .+...|+ |++++. ..-..++|.+-+...-+.-.+ ......-+.--+..++ ...+++-|++
T Consensus 331 DvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~ 408 (459)
T KOG4340|consen 331 DVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDE 408 (459)
T ss_pred HHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 877543210 111 1233343 344443 344566666555211110000 0011111111111221 1223333444
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 403 LLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 403 ~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+++- ......-+..|.+..++..++++|+.-.+
T Consensus 409 ~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 409 TLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 44432 12455667788899999999999987654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-05 Score=88.36 Aligned_cols=15 Identities=20% Similarity=-0.002 Sum_probs=9.2
Q ss_pred chHHHHHHHHHHhCC
Q 046803 22 KPLQQVHAHLIVAGY 36 (580)
Q Consensus 22 ~~~~~~~~~~~~~g~ 36 (580)
..+..+...+.+.|+
T Consensus 292 ~~~~~~L~~l~~~~l 306 (903)
T PRK04841 292 ENGQMRLEELERQGL 306 (903)
T ss_pred CcHHHHHHHHHHCCC
Confidence 345666666666665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-07 Score=81.01 Aligned_cols=148 Identities=7% Similarity=0.057 Sum_probs=115.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 359 (580)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3457778887776444433221 11 012235666777777777664 234468899999999999999
Q ss_pred HHHHHHHHHhHcCCCC-CHHHHHHHHHHH-HhcCC--chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 046803 360 LNEAYKFVKDVIGEKP-APAVWTAMLGAC-KMHKN--FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 360 ~~~A~~~~~~~~~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
+++|.+.|++++...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..|+..+...|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998888 478888888864 67777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 046803 436 IMIQKG 441 (580)
Q Consensus 436 ~m~~~~ 441 (580)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 998754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.7e-06 Score=93.32 Aligned_cols=324 Identities=10% Similarity=-0.023 Sum_probs=206.1
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC----C----C--h--hHHHHHHHHHHhC
Q 046803 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD----K----S--V--VAWNSMISGYEQN 185 (580)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~----~--~--~~~~~li~~~~~~ 185 (580)
..|+++.+...+..+-......++.........+...|++++|...++.... . + . .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 3456655555544431111112223334455566778999998888765421 1 1 1 1222234456689
Q ss_pred CChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhCCChHHHHHHHHHHHHc----CC-CCcHHHhhHHhhHhhhcC
Q 046803 186 GFAKEAIGLFNLMRDFGVNPDS----TTCVCVLAACAQLGDIDLGRWVHEFIVGQ----GL-DVNVVLATSLINMYARCG 256 (580)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~y~~~g 256 (580)
|++++|...+++....--..+. .....+...+...|+++.|...+.+.... |- .........+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999988763111121 23445556677899999999998887743 21 112334566777888999
Q ss_pred CHHHHHHHHHhccC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhc
Q 046803 257 NVSKAREIFDMMSE-------L----NVIAWTAMISGYGMHGYGTEAVELFHRMRAH--GVRPN--NVTFVAVLSACAHA 321 (580)
Q Consensus 257 ~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd--~~t~~~ll~a~~~~ 321 (580)
++++|...+++..+ + ....+..+...+...|++++|...+++.... ...+. ...+..+.......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 99999998876542 1 1223445566677789999999999887652 11222 23344455677889
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHhHcCCCC-CH----HHHHHHHHHHHhcC
Q 046803 322 GLVQEGHRVFASMRQEYGLLPGVEHH-----VCMVDLFGRAGLLNEAYKFVKDVIGEKP-AP----AVWTAMLGACKMHK 391 (580)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~----~~~~~ll~~~~~~g 391 (580)
|+.++|.+.+..+............+ ...+..+...|+.+.|.+.+.+.....+ .. ..+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 99999999988875421111111111 1122445668999999999855543221 11 12456777888999
Q ss_pred CchHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 392 NFDLGVEVAEHLLSVE------PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
++++|...++++++.. +....++..++.+|.+.|+.++|...+.+..+..
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999988643 1123467788899999999999999999988754
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-06 Score=82.12 Aligned_cols=213 Identities=11% Similarity=0.013 Sum_probs=122.8
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcC-CHHHHHHHHHhccC---CChHHHHHHHHHHHhcCCh--HHHHHH
Q 046803 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG-NVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYG--TEAVEL 295 (580)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~ 295 (580)
..++|..+..++++.. +.+..+|+.-..++.+.| +++++...++++.+ .+..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444432 223333333333333334 34555555554442 2333444443333334432 455666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHH
Q 046803 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA---GL----LNEAYKFVK 368 (580)
Q Consensus 296 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~ 368 (580)
++++.+...+ |..+|....-++.+.|+++++.+.++++++. . ..+...|+.....+.+. |. .++++++..
T Consensus 131 ~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 6666653222 4455555555566666666666666666542 1 12344444444333333 22 356777777
Q ss_pred hHcCCCC-CHHHHHHHHHHHHhc----CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC------------------
Q 046803 369 DVIGEKP-APAVWTAMLGACKMH----KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG------------------ 425 (580)
Q Consensus 369 ~~~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------------------ 425 (580)
+++...| |...|+.+...+... ++..+|...+.++.+.+|.++.++..|+++|+...
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 8888888 578899988888773 44567889999998889999999999999998642
Q ss_pred ChhHHHHHHHHHH
Q 046803 426 RMDRVEVVRNIMI 438 (580)
Q Consensus 426 ~~~~a~~~~~~m~ 438 (580)
..++|.++++.+.
T Consensus 288 ~~~~a~~~~~~l~ 300 (320)
T PLN02789 288 DSTLAQAVCSELE 300 (320)
T ss_pred cHHHHHHHHHHHH
Confidence 2367888888774
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.7e-05 Score=77.36 Aligned_cols=354 Identities=10% Similarity=0.103 Sum_probs=221.3
Q ss_pred HHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Q 046803 81 NSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA 160 (580)
Q Consensus 81 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 160 (580)
+...|+-++|.+..+.-.+..++ +.+.|..+.-......++++|.+.|..+++.+ +.|...+.-|.-.-+..|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 34458888898888777665444 55667666666667788999999999998876 45666776666666666777666
Q ss_pred HHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhHHHHHH------HHHHhCCChHHHHHHH
Q 046803 161 RKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VNPDSTTCVCVL------AACAQLGDIDLGRWVH 230 (580)
Q Consensus 161 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll------~a~~~~~~~~~a~~~~ 230 (580)
...-.+..+ .....|..++.++.-.|++..|..+++...+.. -.|+...+.-.. ......|.++.|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 555544443 355789999999999999999999999887764 245655544332 2334567777776665
Q ss_pred HHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CChHHHHHHH-HHHHhcCChHHHH-HHHHHHHhCCCCC
Q 046803 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--LNVIAWTAMI-SGYGMHGYGTEAV-ELFHRMRAHGVRP 306 (580)
Q Consensus 231 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p 306 (580)
...... +......-..-.+.+.+.+++++|..++..+.. ||...|.-.. .++.+-.+.-+++ .+|....+. .|
T Consensus 209 ~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~ 285 (700)
T KOG1156|consen 209 LDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YP 285 (700)
T ss_pred HhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Cc
Confidence 544332 222333445567788899999999999998876 5555554443 4443333344444 666665542 11
Q ss_pred CHHHHH-HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhHc-C---------
Q 046803 307 NNVTFV-AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL---LNEAYKFVKDVI-G--------- 372 (580)
Q Consensus 307 d~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~-~--------- 372 (580)
-...-. .=++........+....++..+.++ |+++- +..+...|-.-.. +++-..-+...+ +
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence 111100 0111111122223333444444443 55443 2223333322111 111111111222 1
Q ss_pred ---CCCCHHHHH--HHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 373 ---EKPAPAVWT--AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 373 ---~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
..|....|. -+...+-..|+++.|...++.+++.-|.-+..|..-+.++...|.+++|...+++..+.+..
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 145555555 56778889999999999999999999988888989999999999999999999999876544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-05 Score=78.47 Aligned_cols=383 Identities=13% Similarity=0.093 Sum_probs=198.4
Q ss_pred HHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHH--HHH--HHh
Q 046803 78 IIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAAL--VNF--YAK 153 (580)
Q Consensus 78 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--i~~--y~~ 153 (580)
++.+.++|++++|+....+++..+ +-|...+..-+-+..+.+.+++|..+.+ ..+. ..+++.. =.+ ..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 455667788888888888887654 3344456666666777777777774322 2221 1111111 223 346
Q ss_pred CCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHH
Q 046803 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD-STTCVCVLAACAQLGDIDLGRWVHEF 232 (580)
Q Consensus 154 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~ 232 (580)
.+..|+|...++.....+..+...-...+-+.|++++|+++|+.+.+.+.+-- ...-..++.+-... .+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----H
Confidence 78888888888855555554555556677788888888888888876643211 11112222111110 010 1
Q ss_pred HHHcCCCC--cHHHhhHHhhHhhhcCCHHHHHHHHHhcc--------CC--C---hH-----HHHHHHHHHHhcCChHHH
Q 046803 233 IVGQGLDV--NVVLATSLINMYARCGNVSKAREIFDMMS--------EL--N---VI-----AWTAMISGYGMHGYGTEA 292 (580)
Q Consensus 233 ~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~--~---~~-----~~~~li~~~~~~g~~~~A 292 (580)
+......| +-..+-.....+...|++.+|++++.... +. + .. .--.|.-.+...|+..+|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11111111 11222223345666777888877777662 11 1 11 111233455667788888
Q ss_pred HHHHHHHHhCCCCCCHHH----HHHHHHHH---------------------------------------------HhcCC
Q 046803 293 VELFHRMRAHGVRPNNVT----FVAVLSAC---------------------------------------------AHAGL 323 (580)
Q Consensus 293 ~~~~~~m~~~g~~pd~~t----~~~ll~a~---------------------------------------------~~~g~ 323 (580)
..+|...+... .+|... -|.|+..- ...+.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88777777653 223311 11111110 00111
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHH
Q 046803 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLF-GRAGLLNEAYKFVKDVIGEKPA--PAVWTAMLGACKMHKNFDLGVEVA 400 (580)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~ 400 (580)
.+.+.++.... .+..|....-+.+..++ ++.....+|.+++.+...-.|+ ..+...++..-...|+++.|.+++
T Consensus 323 ~~q~r~~~a~l---p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 323 MDQVRELSASL---PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHHhC---CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22222222111 12233322222222222 2223466777777555555564 345556666778889999999998
Q ss_pred H--------HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHH
Q 046803 401 E--------HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNE 472 (580)
Q Consensus 401 ~--------~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 472 (580)
. .+.+..- .|.+...+...|.+.++-+.|..++......-....++. +...........-+..||+.++
T Consensus 400 ~~~~~~~~ss~~~~~~-~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s--~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKH-LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS--IALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhhhhcc-ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc--hHHHhHHHHHhHHHHhcCchHH
Confidence 8 3333332 356777778888888888888888887654311111111 0000000001111345688888
Q ss_pred HHHHHHHHHH
Q 046803 473 IYQYLDELMG 482 (580)
Q Consensus 473 ~~~~l~~l~~ 482 (580)
+.+.+++|.+
T Consensus 477 a~s~leel~k 486 (652)
T KOG2376|consen 477 ASSLLEELVK 486 (652)
T ss_pred HHHHHHHHHH
Confidence 8888888765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.9e-07 Score=82.93 Aligned_cols=181 Identities=10% Similarity=0.040 Sum_probs=109.9
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CC-h---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSE--LN-V---IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN--VTFV 312 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~ 312 (580)
....+..+...|.+.|++++|...|+++.+ |+ . .+|..+...|.+.|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 445556666667777777777777776653 22 1 35566666777777777777777777653211111 1333
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHH
Q 046803 313 AVLSACAHA--------GLVQEGHRVFASMRQEYGLLPGV-EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAM 383 (580)
Q Consensus 313 ~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 383 (580)
.+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +..... . ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~---~---------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNR---L---------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHH---H---------HHHHHHH
Confidence 333444433 5566666666666543 2321 111111110 000000 0 0011245
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 384 LGACKMHKNFDLGVEVAEHLLSVEPEN---PGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 384 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
...+...|++++|+..++++++..|++ +..+..++.+|...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667888999999999999999887764 468889999999999999999999888664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-07 Score=78.04 Aligned_cols=122 Identities=13% Similarity=0.079 Sum_probs=87.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcC
Q 046803 294 ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 294 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 372 (580)
.+|++..+ +.|+. +..+..++...|++++|...|+.+.. ..| +...|..+..++.+.|++++|...|++++.
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555554 34443 44456667778888888888887763 334 577777788888888888888888877777
Q ss_pred CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 373 EKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 373 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
..| ++..|..+..++...|++++|+..|+++++..|+++..+.....+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 777 47777888888888888888888888888888888777766655543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.8e-07 Score=87.99 Aligned_cols=248 Identities=12% Similarity=0.013 Sum_probs=179.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHH
Q 046803 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259 (580)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 259 (580)
.-+.++|+..+|.-.|+...+.. +-+...|..|...-...++-..|+..+.+.++.. +.+..+.-+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34577888888888888887753 3355678777777777788888888888888876 667788888888888888888
Q ss_pred HHHHHHHhccC-CChHHHHHHH---------HHHHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046803 260 KAREIFDMMSE-LNVIAWTAMI---------SGYGMHGYGTEAVELFHRMR-AHGVRPNNVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 260 ~A~~~~~~~~~-~~~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 328 (580)
+|.+.++.-.. .-...|...- ..+.......+..++|-++. +.+..+|......|.-.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 88888775421 0000000000 11111122344555555554 4554466666677777788899999999
Q ss_pred HHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 046803 329 RVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406 (580)
Q Consensus 329 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 406 (580)
..|+.+. .++| |...||.|.-.++...+.++|++.|++++.++|. +.++..|.-+|...|.+++|...|-.++.+
T Consensus 451 Dcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999997 4567 5889999999999999999999999999999998 778889999999999999999999998876
Q ss_pred CCCC----------cchHHHHHHHHHhcCChhHHHH
Q 046803 407 EPEN----------PGHYVMLSNIYALAGRMDRVEV 432 (580)
Q Consensus 407 ~p~~----------~~~~~~l~~~y~~~g~~~~a~~ 432 (580)
.+.+ -.+|..|=.++...++.|.+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 5441 1345555555555555554433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.7e-05 Score=70.20 Aligned_cols=309 Identities=10% Similarity=0.021 Sum_probs=198.4
Q ss_pred hhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHH---HHHHcCCCccHHHHHHHHHHHCCCCCChhhHH-HHHHH
Q 046803 40 RSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLI---IRNSKANFSTDSLLFYRRMIVSNISPSNYTFS-AVIKS 115 (580)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a 115 (580)
..+.+.|+ ..+++.+|+.-|....+-|+..|.++- ..|...|+...|+.=|.+.++ .+||-..-. .--..
T Consensus 42 lElGk~ll----a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELL----ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHH----HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchh
Confidence 34566677 899999999999999888888887775 568889999999999998887 588854321 11233
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHH
Q 046803 116 CAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF 195 (580)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 195 (580)
+.+.|.++.|.+-|+.+++....... ...++.+.--.++-+.+ ...+..+..+|+...|++..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHH
Confidence 56889999999999999987532111 11112221111211111 12233344566666666666
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChH-
Q 046803 196 NLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI- 274 (580)
Q Consensus 196 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~- 274 (580)
..+++.. +-|...+..-..+|...|.+..|..=+....+.. ..+....--+-..+...|+.+.++...++..+-|+.
T Consensus 179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 6666531 2344455555566666666666665555555543 334444444555566666666666666655542211
Q ss_pred -----HHHHH---------HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 275 -----AWTAM---------ISGYGMHGYGTEAVELFHRMRAHGVRPNNVT---FVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 275 -----~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
.|-.+ +......++|.++++-.+...+.......++ +..+-.++...|.+.+|++.-.+..
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL-- 334 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL-- 334 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH--
Confidence 11111 2234567888889988888877543322333 3444556777899999999988886
Q ss_pred cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 338 YGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 338 ~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
.+.|+ +.++.--..+|.-...+++|+.-|+.+....++
T Consensus 335 -~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 335 -DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred -hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 56675 888888889999999999999999888877765
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-05 Score=79.12 Aligned_cols=346 Identities=11% Similarity=0.014 Sum_probs=200.3
Q ss_pred HHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCH
Q 046803 79 IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD-LHVQAALVNFYAKSNNV 157 (580)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~ 157 (580)
.+....|+++.|+.+|-+...... +|..-|+.-..+++..|++++|.+=-.+.++. .|+ ..-|+-+..+..-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 345678999999999999877543 37777888888999999999887765555554 444 45788888888888999
Q ss_pred HHHHHHHccCCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHH-HCCCCCC--------hhHHHHHHHHHHhC-----
Q 046803 158 DVARKVFDRMPDK---SVVAWNSMISGYEQNGFAKEAIGLFNLMR-DFGVNPD--------STTCVCVLAACAQL----- 220 (580)
Q Consensus 158 ~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~--------~~t~~~ll~a~~~~----- 220 (580)
++|+.-|.+-.+. |...++-+..++.... ++.+.|..-. -.++.-+ ...|..++...-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999876653 4566777777662110 0111111000 0001111 11233333222111
Q ss_pred --CChHHHHHHHHHHHHcC---------------CCC------------c----------HHHhhHHhhHhhhcCCHHHH
Q 046803 221 --GDIDLGRWVHEFIVGQG---------------LDV------------N----------VVLATSLINMYARCGNVSKA 261 (580)
Q Consensus 221 --~~~~~a~~~~~~~~~~~---------------~~~------------~----------~~~~~~li~~y~~~g~~~~A 261 (580)
.+.....+.+..+...+ ..| | ..-...+.++..+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 01111111211111110 011 0 01123345555555666666
Q ss_pred HHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046803 262 REIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP--N----NVTFVAVLSACAHAGLVQEGHRVFAS 333 (580)
Q Consensus 262 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d----~~t~~~ll~a~~~~g~~~~a~~~~~~ 333 (580)
.+.+....+ .++.-++....+|...|.+.+....-....+.|-.. | ...+..+..++.+.++.+.|..+|.+
T Consensus 244 ~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 244 IQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 666655543 233334455556666666666555555544433210 0 11222233355556667777777776
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP-AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 334 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
....+ ..|+ .+.+....+++........-+.|+. .-...=...+.+.|++..|+..|.+++..+|+|+.
T Consensus 324 aLte~-Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 324 ALTEH-RTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred Hhhhh-cCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 65432 1222 2223344445554443333344542 22334466788999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.|...+-+|.+.|.+..|.+-.+...+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999999999999999987777665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.2e-07 Score=77.42 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=94.6
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
.++++.. .+.|+ .+..+...+...|++++|.+.|+..+...| +...|..+..++...|++++|+..|+++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455544 33455 355678889999999999999988888888 58889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 408 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
|+++..+..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-05 Score=78.21 Aligned_cols=356 Identities=12% Similarity=0.086 Sum_probs=221.8
Q ss_pred ChhhhchHHH--HHhccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHC-C--------CCCChh
Q 046803 39 SRSMLTKLLS--LVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-N--------ISPSNY 107 (580)
Q Consensus 39 ~~~~~~~ll~--~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~ 107 (580)
|..+-.+++. .|..-|+++.|.+-.+.+. +-..|..|.+.+++..+.+-|.-++-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4455555542 3446679999988887775 4567999999999999998888777666432 1 1232 2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCC-ChhHHHHHHHHHHhCC
Q 046803 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWNSMISGYEQNG 186 (580)
Q Consensus 108 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g 186 (580)
+=..+.-.....|.+++|+.+|.+..+.+ .|=..|-..|.+++|.++-+.-..- =..||..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 22223333457899999999999887654 2445678889999999987653321 1235666666666678
Q ss_pred ChhHHHHHHHHHH----------HCC---------CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhH
Q 046803 187 FAKEAIGLFNLMR----------DFG---------VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247 (580)
Q Consensus 187 ~~~~A~~~~~~m~----------~~g---------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 247 (580)
+.+.|++.|++.. ... -.-|...|.-...-....|..+.|..+|....+ |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 8888888877632 111 012334444444455566777777777766543 456
Q ss_pred HhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--------
Q 046803 248 LINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA-------- 319 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~-------- 319 (580)
++...+-.|+.++|-++-++- .|..+...+..-|-..|++.+|...|.+... |...|..|-
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHH
Confidence 777777888888888876653 4556666788888889999999998887643 222222222
Q ss_pred -------hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc------------CCCCCHHHH
Q 046803 320 -------HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI------------GEKPAPAVW 380 (580)
Q Consensus 320 -------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------~~~p~~~~~ 380 (580)
...+.-.|-++|++. |.. ....+..|-++|.+.+|+++--+.- ....|+...
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 122333444555443 211 1124556778888887777542221 222356555
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHh----------------------cCCCC---------cchHHHHHHHHHhcCChhH
Q 046803 381 TAMLGACKMHKNFDLGVEVAEHLLS----------------------VEPEN---------PGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 381 ~~ll~~~~~~g~~~~a~~~~~~~~~----------------------~~p~~---------~~~~~~l~~~y~~~g~~~~ 429 (580)
+--..-+..+.++++|..++-.+.+ +.|.. ......++..+.++|.+..
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~ 1163 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHA 1163 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHH
Confidence 5555566666677776665543321 11111 2356678899999999888
Q ss_pred HHHHHH
Q 046803 430 VEVVRN 435 (580)
Q Consensus 430 a~~~~~ 435 (580)
|.+-|.
T Consensus 1164 AtKKfT 1169 (1416)
T KOG3617|consen 1164 ATKKFT 1169 (1416)
T ss_pred HHHHHh
Confidence 876554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.6e-05 Score=69.67 Aligned_cols=370 Identities=14% Similarity=0.035 Sum_probs=226.4
Q ss_pred ccCChhHHHHHHccCCC------CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHH
Q 046803 52 DAGFITYAQRIFFCIPS------PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 125 (580)
...++..|+.+++--.. .++..| +...+.+.|++++|+..|.-+... -.|+...+..+.....-.|.+.+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHH
Confidence 67788999888864332 122233 456778899999999999988775 345666666666555667888888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046803 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205 (580)
Q Consensus 126 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (580)
.++-... +.++..-..|.+.-.+.++-++-..+-+.+.+.. .---+|.+..-..-.+.+|+++|.+.... .|
T Consensus 111 ~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ 182 (557)
T KOG3785|consen 111 KSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NP 182 (557)
T ss_pred HHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Ch
Confidence 8765433 3344555566677778888777666665554422 22223444433445689999999999875 35
Q ss_pred ChhHHHHHHH-HHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh--cCCHHHHH--HHHHhcc----------C
Q 046803 206 DSTTCVCVLA-ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR--CGNVSKAR--EIFDMMS----------E 270 (580)
Q Consensus 206 ~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A~--~~~~~~~----------~ 270 (580)
+-...+.-+. +|.+..-++-+.++++-.++. ++.+....|....-..+ .|+..+++ ++-+... +
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 5555555444 456777778888888777665 35555556655444333 23332222 2222111 0
Q ss_pred CC---------------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCH
Q 046803 271 LN---------------------VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA-----HAGLV 324 (580)
Q Consensus 271 ~~---------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~-----~~g~~ 324 (580)
.| +.+--.|+-.|.++++..+|..+.+++.- ..|-....-.+..+-. ....+
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 11 11233455567888999999988887643 3444444444433221 11224
Q ss_pred HHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcC-C-CCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 046803 325 QEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIG-E-KPAPAVWTAMLGACKMHKNFDLGVEVAE 401 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 401 (580)
.-|.+.|+..-. .+..-| +.--.++...+.-..++++.+..+ ..+. . ..|...-..+..+....|++.+|+++|-
T Consensus 340 KiAqqffqlVG~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl-nSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 340 KIAQQFFQLVGE-SALECDTIPGRQSMASYFFLSFQFDDVLTYL-NSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHhcc-cccccccccchHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 556676665432 233322 223345556666667888888877 4442 1 2233333367889999999999999998
Q ss_pred HHHhcCCCCcchHH-HHHHHHHhcCChhHHHHHHHHH
Q 046803 402 HLLSVEPENPGHYV-MLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 402 ~~~~~~p~~~~~~~-~l~~~y~~~g~~~~a~~~~~~m 437 (580)
++...+-.|..+|- .|+.+|.+.++.+.|+.++-++
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 88776644555554 5788999999999998876554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.4e-07 Score=89.65 Aligned_cols=191 Identities=16% Similarity=0.158 Sum_probs=164.4
Q ss_pred CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 237 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|..|...|+..+|..+..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34666667778899999999999999999985 6788899999999999999999988887 5789999999988
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 395 (580)
...+..-+++|+++++....+ .-..+.....+.++++++.+.++..+.+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888878889999998876532 111223333457999999999999998888 58899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
|.+.|.....++|++...|++++.+|.+.|+..+|...+++..+-+-
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999988773
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.1e-06 Score=85.63 Aligned_cols=395 Identities=12% Similarity=-0.006 Sum_probs=211.2
Q ss_pred HHHHHHHHHhCCCCChh-hhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHC
Q 046803 25 QQVHAHLIVAGYGRSRS-MLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS 100 (580)
Q Consensus 25 ~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 100 (580)
..+|..+....++++-. .+..|=.-|...++...|.+.|+..-+ .|..+|......|++..+++.|..+.-..-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 34444444444444322 333333333333477778888876543 56677888888888888888888772221111
Q ss_pred -CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHH--
Q 046803 101 -NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNS-- 177 (580)
Q Consensus 101 -g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~-- 177 (580)
....-...|..+--.+...++...+..-|+..++.. +.|...|..|..+|.++|++..|.++|++...-++.+|-.
T Consensus 556 a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 000111123333333556677777777777777665 4567788888888888888888888887766544333222
Q ss_pred -HHHHHHhCCChhHHHHHHHHHHHC------CCCCChhHHHHHHHHHHhCCChHHHHHHH-------HHHHHcCCCCcHH
Q 046803 178 -MISGYEQNGFAKEAIGLFNLMRDF------GVNPDSTTCVCVLAACAQLGDIDLGRWVH-------EFIVGQGLDVNVV 243 (580)
Q Consensus 178 -li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~-------~~~~~~~~~~~~~ 243 (580)
....-+..|.+++|+..+...... +..--..++..+...+...|-..++..++ .-........+..
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 122345678888888877766532 11111223333333333333222333332 2222222222222
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccCCChH--HHHHHHHH-HHhcCCh---H---HHHHHHHHHHhCCCCCCHHHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSELNVI--AWTAMISG-YGMHGYG---T---EAVELFHRMRAHGVRPNNVTFVAV 314 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~pd~~t~~~l 314 (580)
.|-.+. +|..+|-... |+.+ .+..++.. +-..+.. + -+.+.+-.-+. ...+..++..|
T Consensus 715 ~Wi~as----------dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNL 781 (1238)
T KOG1127|consen 715 QWIVAS----------DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNL 781 (1238)
T ss_pred HHHHHh----------HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHH
Confidence 222222 2233333332 3211 11111111 1111111 1 01111111111 11123333333
Q ss_pred HHHHHh----cC----CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHH
Q 046803 315 LSACAH----AG----LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLG 385 (580)
Q Consensus 315 l~a~~~----~g----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~ 385 (580)
+..|.+ .| +...|...+...++. ...+...|+.|.-+ ...|.+.-|.-.|-+..-..| ...+|..+..
T Consensus 782 Ginylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nlgv 858 (1238)
T KOG1127|consen 782 GINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGV 858 (1238)
T ss_pred hHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccce
Confidence 333322 11 233566666665532 12345556655444 666788888877766665566 5778888888
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
.|.++.+++-|...|.+...++|.|...+...+.+-...|+.-++..+|..
T Consensus 859 L~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred eEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999888888777777788888888877766
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-06 Score=90.18 Aligned_cols=140 Identities=7% Similarity=0.049 Sum_probs=111.2
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHH
Q 046803 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHV 348 (580)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 348 (580)
.++..+-.|.....+.|..++|..+++...+ +.||.. ....+..++.+.+.+++|....++... ..| +.....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3477788888888889999999999998888 567764 556677788889999999988888874 345 477777
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHH
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 415 (580)
.+..++.+.|++++|.++|++.+...|+ ..+|.++..++...|+.++|...|+++++...+-...|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 8888888999999999999888766665 788888888899999999999999998887654344443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00012 Score=77.00 Aligned_cols=214 Identities=14% Similarity=0.170 Sum_probs=124.9
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 046803 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIV 234 (580)
Q Consensus 155 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 234 (580)
+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+. .|+..|..+++.+.+.|.+++-..++....
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344444444444333 467999999999999999999887553 377889999999999999999999888887
Q ss_pred HcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC------------
Q 046803 235 GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH------------ 302 (580)
Q Consensus 235 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------ 302 (580)
+..-+|. +-+.|+-+|++.+++.+-++... -||+.-......-+...|.++.|.-+|.....-
T Consensus 1161 kk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1161 KKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGE 1235 (1666)
T ss_pred HhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7765554 45678899999999988776643 234433344444444444444443333321100
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcC
Q 046803 303 --------GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL--PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 303 --------g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 372 (580)
.-..+..||-.+-.+|...+.+.-|. | +|+. ....-..-|+..|-..|-++|-+.+++..++
T Consensus 1236 yQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ-----i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1236 YQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ-----I---CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH-----h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 00112344544545554444333221 1 1222 2233444556666666666666666655555
Q ss_pred CCC-CHHHHHHHHHHHHh
Q 046803 373 EKP-APAVWTAMLGACKM 389 (580)
Q Consensus 373 ~~p-~~~~~~~ll~~~~~ 389 (580)
.+. .-..|.-|.-.|.+
T Consensus 1308 LERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1308 LERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 443 23344444444444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=73.57 Aligned_cols=119 Identities=6% Similarity=0.040 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
....-.+...+...|++++|..+|+-.....| +..-|..|..+|...|++++|+..|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44444566778899999999999966667788 47779999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 046803 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 485 (580)
..|+.+.|.+.|+..+... ..+|+..++.+..+.++..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999887631 145776666666666655543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.1e-06 Score=74.30 Aligned_cols=154 Identities=7% Similarity=0.098 Sum_probs=116.5
Q ss_pred hhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046803 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 328 (580)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345777777777655443332221 01223566778888888877742 346678888888999999999999
Q ss_pred HHHHHhHHhcCCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 329 RVFASMRQEYGLLP-GVEHHVCMVDLF-GRAGL--LNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 329 ~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
..|++..+ +.| +...+..+..++ .+.|+ .++|.+++++.+...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998874 345 577888888864 67777 5999999999998888 5788999999999999999999999999
Q ss_pred HhcCCCCcchH
Q 046803 404 LSVEPENPGHY 414 (580)
Q Consensus 404 ~~~~p~~~~~~ 414 (580)
++..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99998766544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-06 Score=77.57 Aligned_cols=181 Identities=15% Similarity=0.076 Sum_probs=130.8
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc---HHHhhHHhhHhhhcCCHHHHHHHHHhccC--CC-h---HHH
Q 046803 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN---VVLATSLINMYARCGNVSKAREIFDMMSE--LN-V---IAW 276 (580)
Q Consensus 206 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~ 276 (580)
....+......+...|+++.|...+..+.+.. +.+ ...+..+..+|.+.|++++|...|+++.+ |+ . .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45677888888999999999999999998764 222 24677889999999999999999999874 32 1 245
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 046803 277 TAMISGYGMH--------GYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH 347 (580)
Q Consensus 277 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 347 (580)
..+..++.+. |+.++|.+.|+++... .|+.. ....+... .. .. ... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHH-H--------HHH
Confidence 5666666654 7889999999999874 45543 22111111 00 00 000 0 112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 046803 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 348 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
..+...|.+.|++++|...+++.+...|+ ...+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24667789999999999999887755443 56788999999999999999999888876555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.3e-06 Score=73.01 Aligned_cols=156 Identities=10% Similarity=0.078 Sum_probs=110.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 356 (580)
..+-..+...|+.+....+..+.... ..-|.......+....+.|++.+|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44555666677777777666664432 122333444566677777888888888777763 445567778888888888
Q ss_pred cCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 046803 357 AGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 357 ~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
.|++++|..-|.+.+...|+ +...+.|.-.+.-.|+.+.|..++.......+.++.+-..|+.+....|++++|..+-.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888777777777763 66777777777788888888888888777777777777778888888888887776543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-05 Score=78.24 Aligned_cols=101 Identities=20% Similarity=0.210 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHH
Q 046803 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264 (580)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 264 (580)
...|.+|+.+++.+.... .-.--|..+.+.|+..|+++.|+++|.+. ..++-.|++|.+.|+|++|.++
T Consensus 745 akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 334444444444443321 12223444445555555555555544322 1233344555555555555555
Q ss_pred HHhccCCC--hHHHHHHHHHHHhcCChHHHHHHH
Q 046803 265 FDMMSELN--VIAWTAMISGYGMHGYGTEAVELF 296 (580)
Q Consensus 265 ~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 296 (580)
-.+...|. ...|-+-..-+-.+|++.+|.++|
T Consensus 814 a~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 44443322 233333334444455555555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-05 Score=85.88 Aligned_cols=233 Identities=12% Similarity=0.164 Sum_probs=163.1
Q ss_pred CCCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHc-CC---CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-CC-hHHH
Q 046803 204 NPDS-TTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GL---DVNVVLATSLINMYARCGNVSKAREIFDMMSE-LN-VIAW 276 (580)
Q Consensus 204 ~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~-~~~~ 276 (580)
.||. ..|..-|....+.++.++|+++.+++++. ++ ..-..+|.+++++-..-|.-+...++|+++.+ -| ...|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 3443 46677777777888888888888887754 21 11245677777777777777888888888776 23 4567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 356 (580)
..|...|.+.+..++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++.++.+...-.--+....-.+.+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 78888888888889999999988874 33455678888888888888888888888887532111124455556677778
Q ss_pred cCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC--CCCcchHH-HHHHHHHhcCChhHHHH
Q 046803 357 AGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE--PENPGHYV-MLSNIYALAGRMDRVEV 432 (580)
Q Consensus 357 ~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~-~l~~~y~~~g~~~~a~~ 432 (580)
.|+.+.+..+|+..+...|. ...|+..+..-.++|+.+.+..+|++++.+. |.....++ ..+..=-..|+-..++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 89999999999777766674 7789999999999999999999999988766 43333333 33333334466555555
Q ss_pred HHHHH
Q 046803 433 VRNIM 437 (580)
Q Consensus 433 ~~~~m 437 (580)
+-.+.
T Consensus 1693 VKarA 1697 (1710)
T KOG1070|consen 1693 VKARA 1697 (1710)
T ss_pred HHHHH
Confidence 44443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.8e-06 Score=73.98 Aligned_cols=306 Identities=16% Similarity=0.116 Sum_probs=174.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHH-HHHHHH
Q 046803 107 YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--KSVVAWNS-MISGYE 183 (580)
Q Consensus 107 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~ 183 (580)
.-+.+++..+.+..+++.+.+++..-.+.. +.+....+.|..+|....++..|-..++++.+ |...-|.. -...+-
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 335555655666666777777666555443 22455566666777777777777777777654 22222211 233455
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH--HhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHH
Q 046803 184 QNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAAC--AQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261 (580)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 261 (580)
+.+.+..|+++...|.+. |+...-..-+.+. .+.+++..++.+.++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 667778888887777542 2222222222222 34566667777766654322 344445555556778888888
Q ss_pred HHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 262 REIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 262 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
.+-|+...+ .....||.-+. ..+.|++..|+++..++++.|++-... ++ .|...++..+ +..
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDv-rsv--- 229 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDV-RSV--- 229 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCch-hcc---
Confidence 888877665 34456665443 345677888888888888777652111 00 0100000000 000
Q ss_pred cCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHhHcC---CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 338 YGLLPGV-------EHHVCMVDLFGRAGLLNEAYKFVKDVIG---EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 338 ~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
| .|-. ..+|.-.-.+.+.|+++.|.+.+.++-| .+.|++|...+.-. -..+++.++.+-+.-+++++
T Consensus 230 -g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 230 -G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred -c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 0 0111 1222223345677888888887744432 22456665544322 23456777777777788888
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 408 PENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 408 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
|-.+.++..+.-.|++..-++-|..++-+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 87778888888888888888888777653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=57.80 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=25.4
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 046803 136 GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP 168 (580)
Q Consensus 136 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 168 (580)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777888888888877777764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-07 Score=57.49 Aligned_cols=33 Identities=39% Similarity=0.641 Sum_probs=24.5
Q ss_pred CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 237 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-05 Score=80.19 Aligned_cols=217 Identities=14% Similarity=0.137 Sum_probs=170.5
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 046803 137 YDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAA 216 (580)
Q Consensus 137 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 216 (580)
++|-...-..+...+.++|-..+|..+|+++ ..|...|.+|...|+..+|..+..+-.+ -+||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455556677888999999999999999986 5788889999999999999999888877 37899999988888
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCC---ChHHHHHHHHHHHhcCChHHHH
Q 046803 217 CAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSEL---NVIAWTAMISGYGMHGYGTEAV 293 (580)
Q Consensus 217 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 293 (580)
..+..-+++|.++.++.... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 87777788888887766533 1222222334478999999999876543 3568888888888999999999
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 294 ELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 294 ~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+ ++ .-+...|...+......|.+++|.+.+.+..
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99988877 56765 5799999999999999999999998875 34 3445566667777788999999999996655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.8e-05 Score=74.38 Aligned_cols=119 Identities=17% Similarity=0.158 Sum_probs=87.0
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a 396 (580)
+...|..++|+..++.+.+ ..+-|+.......+.+.+.|+.++|.+.+++++...|+ ...+-.+..++.+.|++++|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 4456777777777777765 33335666666777777888888888888777777776 56677777777888888888
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
+.++...+..+|+|+..|..|+.+|...|+..++...+.+..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 888888777778888888888877777777777777666553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00028 Score=74.44 Aligned_cols=335 Identities=13% Similarity=0.139 Sum_probs=200.7
Q ss_pred hHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHH----------HHHHHHHHHhCC-----
Q 046803 73 LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG----------RAVHCHVFVSGY----- 137 (580)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a----------~~~~~~~~~~g~----- 137 (580)
.-+-|..-.-+.++..--+-.++.....|.+ |..|++.+...|..+++-.+- +.+=....++++
T Consensus 840 ~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~v 918 (1666)
T KOG0985|consen 840 PVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACV 918 (1666)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEE
Confidence 3444555556666666667777777777766 788888888877765543221 111111111110
Q ss_pred -----CCc---------hHHHHHHHHHHHhCCCHHHHHHHHccC----------------CC-CChhHHHHHHHHHHhCC
Q 046803 138 -----DSD---------LHVQAALVNFYAKSNNVDVARKVFDRM----------------PD-KSVVAWNSMISGYEQNG 186 (580)
Q Consensus 138 -----~~~---------~~~~~~li~~y~~~g~~~~A~~~f~~~----------------~~-~~~~~~~~li~~~~~~g 186 (580)
.-| ...+..+..-..+..+.+-=.+++.+- ++ .|+..-..-+.++...+
T Consensus 919 aYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtad 998 (1666)
T KOG0985|consen 919 AYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTAD 998 (1666)
T ss_pred eecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcC
Confidence 001 122333333344444444444443221 11 34555566678888888
Q ss_pred ChhHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-----------------------CCCc
Q 046803 187 FAKEAIGLFNLMRDFGVNP--DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG-----------------------LDVN 241 (580)
Q Consensus 187 ~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~ 241 (580)
-+.+-++++++..-.+-.- +...-+.++-. +-..+.....++.+++-..+ +..+
T Consensus 999 Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n 1077 (1666)
T KOG0985|consen 999 LPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMN 1077 (1666)
T ss_pred CcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhccc
Confidence 8888888888876321110 11111111111 11112222222222222111 1122
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 321 (580)
....+.|+. ..+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+. -|...|..++.++.+.
T Consensus 1078 ~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~ 1146 (1666)
T KOG0985|consen 1078 VSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRT 1146 (1666)
T ss_pred HHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhc
Confidence 222222222 22344444444444333 457999999999999999999888653 2667899999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 046803 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAE 401 (580)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 401 (580)
|.+++-.+++....++ .-.|.+.+ .|+-+|++.+++.+-++++ ..||..-......-|...|.++.|.-+|.
T Consensus 1147 ~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi-----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1147 GKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFI-----AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred CcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHh-----cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 9999999998887664 56666554 5899999999999999888 46887778888999999999999988887
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 402 HLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 402 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
.. +.|..|+..+...|.+..|...-++
T Consensus 1219 ~v--------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1219 NV--------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred Hh--------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 43 4566777777777777666554433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-05 Score=79.56 Aligned_cols=346 Identities=13% Similarity=0.038 Sum_probs=173.3
Q ss_pred ccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHcc
Q 046803 87 STDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDR 166 (580)
Q Consensus 87 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 166 (580)
...|+..|-+..+..+. =...|..+-..|...-+...|.+-|..+.+.+ +.|...+.++.+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44555555444432111 11235555555555555556666666665544 33455566666666666666666666433
Q ss_pred CCCCCh-----hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc
Q 046803 167 MPDKSV-----VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN 241 (580)
Q Consensus 167 ~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 241 (580)
..+.+. ..|.-..-.|...++..+|+.-|+...+.. +-|...|..+..+|...|.+..|.++|..+.... |.+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHh
Confidence 332211 122223333445555555555555555431 1233455555555555555555555555554433 222
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---------C-ChHHHHHHHHHHHhcCChHHHHHHHHHHH-------hCC-
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---------L-NVIAWTAMISGYGMHGYGTEAVELFHRMR-------AHG- 303 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~g- 303 (580)
...---..-+-+..|++.+|...+..+.. . -..++-.+...+...|-..+|...+++-+ ...
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 22222222333445555555555444331 0 01122222222222222222222222211 111
Q ss_pred -------------------CCCCHHHHHHHHHHHH----hcCCH---H---HHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 046803 304 -------------------VRPNNVTFVAVLSACA----HAGLV---Q---EGHRVFASMRQEYGLLPGVEHHVCMVDLF 354 (580)
Q Consensus 304 -------------------~~pd~~t~~~ll~a~~----~~g~~---~---~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 354 (580)
+.||. .-..++..+. ..+.. + -|.+.+-.-. .+..+...|..|+.-|
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~-vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSI-VNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccc-hHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccchHHHHhHHH
Confidence 11331 1111111111 11211 1 1112221111 1112233444454444
Q ss_pred HH--------cCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046803 355 GR--------AGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425 (580)
Q Consensus 355 ~~--------~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 425 (580)
.+ ..+...|...+.+.+.... +...|+.|.-. ...|++.-|.-.|-+....+|.+...|..++..+....
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 43 1233467888877776665 46778877666 77789999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 046803 426 RMDRVEVVRNIMIQKG 441 (580)
Q Consensus 426 ~~~~a~~~~~~m~~~~ 441 (580)
+++.|...|.+.....
T Consensus 865 d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLD 880 (1238)
T ss_pred cHHHhhHHHHhhhhcC
Confidence 9999999999887644
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00011 Score=71.32 Aligned_cols=228 Identities=14% Similarity=0.073 Sum_probs=141.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST-TCVCVLAACAQLG-DIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
+..+-..+...++.++|+.++.++++. .|+.. .|..--.++...+ .++++...++.+.+.. +.+..+|+.-..++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 333344455667778888888877763 44443 4444444555556 5677888887777765 45555666555555
Q ss_pred hhcCCH--HHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC-
Q 046803 253 ARCGNV--SKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA---GL- 323 (580)
Q Consensus 253 ~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~---g~- 323 (580)
.+.|+. +++..+++.+.+ .|..+|+...-.+...|+++++++.+.++++.+.. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 555542 566777766654 56678888888888888888888888888876544 444555544444443 22
Q ss_pred ---HHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcC---
Q 046803 324 ---VQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRA----GLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHK--- 391 (580)
Q Consensus 324 ---~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g--- 391 (580)
.++...+...++. ..| +...|+.+..+|... ++..+|.+++.+.+...| +......|+..|....
T Consensus 196 ~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~ 272 (320)
T PLN02789 196 EAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT 272 (320)
T ss_pred cccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc
Confidence 2455666655553 234 466777677777662 345668888877666666 4666777777776532
Q ss_pred ---------------CchHHHHHHHHHHhcCCC
Q 046803 392 ---------------NFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 392 ---------------~~~~a~~~~~~~~~~~p~ 409 (580)
..++|..+++.+.+.+|-
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 273 AEFRDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhhhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235566666666545554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-05 Score=71.78 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=114.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHH
Q 046803 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTA 382 (580)
Q Consensus 304 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 382 (580)
..|+......+-.++...|+-+....+...... .-..+......++....+.|++.+|...+++.....| |...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 345443335666678888888888888777543 3334566666799999999999999999999887776 6999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+..+|.+.|+++.|...|.+++++.|.++..++.|+-.|.-.|+.+.|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999887644
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.4e-06 Score=71.25 Aligned_cols=101 Identities=16% Similarity=0.317 Sum_probs=81.2
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 340 LLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 340 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
..| +......+...+...|++++|.+.+++.....| +...|..+...+...|++++|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 345566677778888888888888877766666 477788888888888888888888888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 046803 418 SNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888887764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0001 Score=74.99 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=92.2
Q ss_pred hhhcCCHHHHHHHHHhccCCChH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046803 252 YARCGNVSKAREIFDMMSELNVI--AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHR 329 (580)
Q Consensus 252 y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 329 (580)
-.....|.+|..+++.+...++. -|..+...|+..|+++.|.++|.+.- .|.-.|..|.+.|+|+.|.+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 33445555666666555543332 24455556666666666666665432 13334555666666666665
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
+-.+. +|-......|-+-..-+-..|++.+|.++| -.++ .|+. -+..|-++|..+..+++.++-. |+
T Consensus 813 la~e~---~~~e~t~~~yiakaedldehgkf~eaeqly-iti~-~p~~-----aiqmydk~~~~ddmirlv~k~h---~d 879 (1636)
T KOG3616|consen 813 LAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLY-ITIG-EPDK-----AIQMYDKHGLDDDMIRLVEKHH---GD 879 (1636)
T ss_pred HHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhhee-EEcc-CchH-----HHHHHHhhCcchHHHHHHHHhC---hh
Confidence 54433 243344555555555556666666666666 3332 2332 2455666666666665555432 22
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 410 -NPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 410 -~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
-..+...++.-|...|+...|..-|-+.
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 1245667788888889998888877654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00036 Score=62.98 Aligned_cols=248 Identities=12% Similarity=0.072 Sum_probs=152.1
Q ss_pred hCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHH-HHHH
Q 046803 153 KSNNVDVARKVFDRMPD--KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL-GRWV 229 (580)
Q Consensus 153 ~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~-a~~~ 229 (580)
-.|.+..++..-..... .++..-.-+-++|...|.+...+.- ... |-.|....+..+.......++.+. -.++
T Consensus 20 Y~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 34556555554433322 2333333455666666765543322 211 223344444444444444444333 3344
Q ss_pred HHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 046803 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNV 309 (580)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 309 (580)
.+.+.......+......-...|...|++++|.+.......-+....+ ...+.+..+.+-|.+.+++|.+- -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 455555444444444444556788889999999988874433333333 34456677788899999999873 2566
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHH
Q 046803 310 TFVAVLSACAH----AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAML 384 (580)
Q Consensus 310 t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll 384 (580)
|.+-|.+++.+ .+.+.+|.-+|++|.. ...|+..+.+.+..+....|++++|..++++++...+ ++.+...++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 77767766654 4568888888988875 3567877888888888888899999998888886666 577776666
Q ss_pred HHHHhcCCc-hHHHHHHHHHHhcCCCCc
Q 046803 385 GACKMHKNF-DLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 385 ~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 411 (580)
..-...|.. +...+...++....|..+
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 666666654 445566777777777654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.1e-05 Score=81.02 Aligned_cols=143 Identities=8% Similarity=0.021 Sum_probs=116.2
Q ss_pred CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHH
Q 046803 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT-FVA 313 (580)
Q Consensus 238 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ 313 (580)
.+.++..+-.|.......|.+++|+.+++...+ | +...+..++..+.+.+++++|+..+++... ..|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 466788899999999999999999999998875 4 456788889999999999999999999998 4666654 455
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC-CCHHHHHHHH
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-PAPAVWTAML 384 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ll 384 (580)
+..++.+.|+.++|..+|+++.. ..+-+...+..+..++-..|+.++|...|++++... |....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 56688899999999999999985 222347888889999999999999999998887443 4455555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00031 Score=75.89 Aligned_cols=234 Identities=9% Similarity=0.049 Sum_probs=139.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCC
Q 046803 108 TFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGF 187 (580)
Q Consensus 108 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 187 (580)
.+..|+..+...+++++|.++.+..++.. +.....|-.+...|...++.+++..+ .++.......+
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~ 98 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccc
Confidence 45556666666666666666666554442 22222333333355555554444333 23444444445
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHh
Q 046803 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267 (580)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 267 (580)
+.-+..+...|... .-+...+..+..+|.+.|+.+++.++++++++.. +.|+.+.|.+...|+.. ++++|.+++.+
T Consensus 99 ~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 99 WAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred hhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 54344444445442 2344577778888888888888888888888887 77888888888888888 88888888776
Q ss_pred ccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHH
Q 046803 268 MSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT-FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEH 346 (580)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 346 (580)
.. ..|...+++.++.++|.++... .|+... |..++. .+....+..--+.+
T Consensus 175 AV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~~~~~ 225 (906)
T PRK14720 175 AI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTRLVGL 225 (906)
T ss_pred HH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccchhHHH
Confidence 52 3366677888888888888874 344332 222222 22221122222334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHH
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACK 388 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~ 388 (580)
+-.+..-|-..++++++.++++..+...| |.....-++..|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 44455666667777777777766666666 3444555555554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=79.27 Aligned_cols=150 Identities=9% Similarity=0.072 Sum_probs=90.5
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
..++..|..+|-+.|+.++|..+++++.+ .|+.+.|.+...|+.. +.++|++++.+.... +
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 34555566666666666666666666553 3455556666666655 666666666555432 3
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
...+++..+.+++.++.. ...-+...+-.+..... ..++..--..++-.+-..|...+++++++.
T Consensus 180 i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~-------------~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVL-------------GHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHH-------------hhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 444455556666665542 11112222211111111 112222334556667778899999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHH
Q 046803 399 VAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
+++.+++.+|.|..+...++..|.
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999999998887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-05 Score=77.30 Aligned_cols=125 Identities=15% Similarity=0.228 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGAC 387 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~ 387 (580)
.....|+..+...++++.|..+|+++.+. .|+. ...++..+...++-.+|.+++++.+...| +...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556777778889999999999999754 3654 44578888888999999999999987777 577777778889
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
...++++.|+.+.+++.+..|++..+|..|+.+|...|++++|...++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999998774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.3e-05 Score=76.63 Aligned_cols=259 Identities=15% Similarity=0.127 Sum_probs=177.5
Q ss_pred CchHHHHHHHH--HHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCCh
Q 046803 139 SDLHVQAALVN--FYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF-G--------VNPDS 207 (580)
Q Consensus 139 ~~~~~~~~li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 207 (580)
-|..+-.++++ .|...|++|.|.+-.+-+. +...|..|.+.+.+..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 35666666664 4777899999888877664 4578899999988888877776555555321 1 1222
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCC-hHHHHHHHHHHHhc
Q 046803 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELN-VIAWTAMISGYGMH 286 (580)
Q Consensus 208 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~ 286 (580)
.+=.-+.-....+|.+++|+.+|.+..+.+ .|=..|-..|.+++|.++-+.-.... -.||.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222223333457889999999999887654 45566788899999988866433211 24666667777778
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 046803 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKF 366 (580)
Q Consensus 287 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 366 (580)
++.+.|++.|++... |-...+..|. .++....++.+++. |...|.-...-+-..|..+.|+.+
T Consensus 872 ~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~-------d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKR-------DESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred ccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhcc-------chHHHHHHHHHHhcccchHHHHHH
Confidence 889999999886432 1222222222 23444444444442 345566666777789999999999
Q ss_pred HHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 367 VKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 367 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
|.. ..-|-+++...+-+|+.++|-++.++- .|..+...|+..|...|++.+|...|.+..
T Consensus 935 Y~~-------A~D~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 935 YSS-------AKDYFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHH-------hhhhhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 932 345778888888999999998887754 356778899999999999999999988764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00031 Score=62.86 Aligned_cols=167 Identities=13% Similarity=0.123 Sum_probs=115.5
Q ss_pred hHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHH---HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 046803 246 TSLINMYARCGNVSKAREIFDMMSELNVIAWTAM---ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322 (580)
Q Consensus 246 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 322 (580)
.-++-+...+|+.+.|...++.+...-+.++... ..-+-..|++++|+++|+.+.+.. +.|.+++.-=+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3344444556666666666665543111111111 112345688899999999888765 445667766666666778
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcC---CchHHHH
Q 046803 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHK---NFDLGVE 398 (580)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g---~~~~a~~ 398 (580)
..-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.+++.+=..| ++..+..+...+...| +.+.+.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 87788888888776 4567888999999999999999999999988887777 4666666666654443 7788999
Q ss_pred HHHHHHhcCCCCcchHH
Q 046803 399 VAEHLLSVEPENPGHYV 415 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~ 415 (580)
.|++++++.|.+...+.
T Consensus 213 yy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHhChHhHHHHH
Confidence 99999999986544433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-06 Score=53.61 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCCh
Q 046803 72 FLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSN 106 (580)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 106 (580)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.6e-05 Score=64.27 Aligned_cols=114 Identities=10% Similarity=0.038 Sum_probs=89.5
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC
Q 046803 295 LFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373 (580)
Q Consensus 295 ~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 373 (580)
.|++... ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...+.+.|++++|...+++.+..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 34443 44556667788889999999999888752 2336778888889999999999999999888777
Q ss_pred CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 374 KPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 374 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
.|+ ...+..+...+...|++++|...++++++..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 774 777888888999999999999999999999988654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0009 Score=65.74 Aligned_cols=133 Identities=17% Similarity=0.079 Sum_probs=76.0
Q ss_pred hCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhCCChHHHHH
Q 046803 153 KSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD-STTCVCVLAACAQLGDIDLGRW 228 (580)
Q Consensus 153 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~ 228 (580)
..|++++|+..++.+.. | |+..+......+.+.|+..+|.+.++++... .|+ ......+..++.+.|++.+|..
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34455555555554432 2 3444445555666666666666666666553 444 3344455556666666666666
Q ss_pred HHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046803 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302 (580)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 302 (580)
++....... +.|+..|..|..+|...|+..+|.... ..+|...|++++|+..+....+.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 666655553 556666666666666666666665543 23456667777777666666553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0087 Score=59.62 Aligned_cols=396 Identities=10% Similarity=0.110 Sum_probs=222.9
Q ss_pred CChhhhchHHHHHhccCChhHHHHHHccCCC--C-ChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046803 38 RSRSMLTKLLSLVCDAGFITYAQRIFFCIPS--P-DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIK 114 (580)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 114 (580)
-|+..|+.||+-+-.. .+++++..++++.. | ....|..-|..-....+++....+|.+-+..-+ +...|..-|.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHH
Confidence 3778899999544333 88888888888764 3 455788889988888999999999988776433 4444554444
Q ss_pred HHH-ccCChHHH----HHHHHHHH-HhCCCCc-hHHHHHHHHHH---------HhCCCHHHHHHHHccCCCC---Ch-hH
Q 046803 115 SCA-HLSILNLG----RAVHCHVF-VSGYDSD-LHVQAALVNFY---------AKSNNVDVARKVFDRMPDK---SV-VA 174 (580)
Q Consensus 115 a~~-~~~~~~~a----~~~~~~~~-~~g~~~~-~~~~~~li~~y---------~~~g~~~~A~~~f~~~~~~---~~-~~ 174 (580)
--. ..++.... .+.|+.++ +.|+.+- -..|+..++.. ....+++..+++++++... |. ..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 322 22333332 23344333 3454332 34566666543 3445677788888877642 22 12
Q ss_pred HHH------HHHHHH-------hCCChhHHHHHHHHHHH--CCCCCChhH---------------HHHHHHHHHhCCChH
Q 046803 175 WNS------MISGYE-------QNGFAKEAIGLFNLMRD--FGVNPDSTT---------------CVCVLAACAQLGDID 224 (580)
Q Consensus 175 ~~~------li~~~~-------~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~a~~~~~~~~ 224 (580)
|+- =|+-.. +...+..|.+++++... .|..-+..+ |..+|.. .+.+-+.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL~ 253 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCcc
Confidence 322 222111 12335566666666643 344433322 2222222 1111111
Q ss_pred ---------HHHHHHHHHHH-cCCCCcHHHhh-----HHhhHhhhcCCHH-------HHHHHHHhccC----CChHHHHH
Q 046803 225 ---------LGRWVHEFIVG-QGLDVNVVLAT-----SLINMYARCGNVS-------KAREIFDMMSE----LNVIAWTA 278 (580)
Q Consensus 225 ---------~a~~~~~~~~~-~~~~~~~~~~~-----~li~~y~~~g~~~-------~A~~~~~~~~~----~~~~~~~~ 278 (580)
...-+|++.+. .+..|++.... ..-+.+...|+.. ++..++++..+ .+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222221 23333332211 1123344444433 33333333322 12222222
Q ss_pred HHHHHHhc---CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH
Q 046803 279 MISGYGMH---GYGTEAVELFHRMRAH-GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDL 353 (580)
Q Consensus 279 li~~~~~~---g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 353 (580)
+..---.. ...+.....++++... ...| ..+|..+++.-.+..-++.|+.+|.++.++ +..+ .+.++++++.-
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEY 411 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHH
Confidence 22111111 1245556666666652 2333 346777788777888888899999988765 4445 67778888876
Q ss_pred HHHcCCHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhc--CCC-CcchHHHHHHHHHhcCChhH
Q 046803 354 FGRAGLLNEAYKFVKDVIGEKPAP-AVWTAMLGACKMHKNFDLGVEVAEHLLSV--EPE-NPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~y~~~g~~~~ 429 (580)
|+ .++.+-|..+|+-.+..-+|. .--...+.-+...++-.-+..+|++++.. .|+ ....|..++..=+.-|+...
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 65 678888888887667555653 33456666777788888888999988865 222 23678888888888888888
Q ss_pred HHHHHHHHHhC
Q 046803 430 VEVVRNIMIQK 440 (580)
Q Consensus 430 a~~~~~~m~~~ 440 (580)
+.++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 88887777654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-06 Score=52.34 Aligned_cols=35 Identities=37% Similarity=0.674 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS 207 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 207 (580)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.8e-05 Score=63.36 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=73.6
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCH----HHHHHHHHHHHhcCCch
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP----AVWTAMLGACKMHKNFD 394 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~ll~~~~~~g~~~ 394 (580)
..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+..+...||. .....|...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 36667777777777766533222 12333445566777777777777776666544543 23445666777777777
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
+|+..++.. .-.+..+..+..++++|.+.|++++|...|+..
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777553 222334556667788888888888888877653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.7e-05 Score=60.55 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 425 (580)
+..+...+...|++++|.+.+++.+...|+ ...+..+...+...+++++|...+++..+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445677778889999999999777776664 4677788888888899999999999999888888888888999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 046803 426 RMDRVEVVRNIMIQK 440 (580)
Q Consensus 426 ~~~~a~~~~~~m~~~ 440 (580)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988877653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.017 Score=61.06 Aligned_cols=379 Identities=11% Similarity=0.089 Sum_probs=179.9
Q ss_pred hccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHH
Q 046803 51 CDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127 (580)
Q Consensus 51 ~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 127 (580)
.++|+.++|..+++.... .|..|...+-..|...++.++|..+|++... .-|+..-...+..++.+.+++.+-.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777776665432 3566677777777777777777777777664 34556666666677777666665444
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCC----------CHHHHHHHHccCCCCC-----hhHHHHHHHHHHhCCChhHHH
Q 046803 128 VHCHVFVSGYDSDLHVQAALVNFYAKSN----------NVDVARKVFDRMPDKS-----VVAWNSMISGYEQNGFAKEAI 192 (580)
Q Consensus 128 ~~~~~~~~g~~~~~~~~~~li~~y~~~g----------~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~ 192 (580)
+--++-+. ++.++..+=+.++.+...- -+.-|.+.++.+.+.+ ..-...-....-..|.+++|+
T Consensus 132 aa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 132 AALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 43333332 3334443333444443321 1223444444444332 111111122234466677777
Q ss_pred HHHHH-HHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh----------------c
Q 046803 193 GLFNL-MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR----------------C 255 (580)
Q Consensus 193 ~~~~~-m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----------------~ 255 (580)
+++.. .-+.-...+...-+--+..+...+++.+..++-.++...|. .| |...++.+.+ .
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~-Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~ 286 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN-DD---YKIYTDSVFKLLELLNKEPAEAAHSLS 286 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC-cc---hHHHHHHHHHHHHhcccccchhhhhhh
Confidence 77632 22222222333444556666667777777777777776652 22 3322222211 1
Q ss_pred CCHHHHHHHHHhccCC-ChHHHHHHHHHH---HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046803 256 GNVSKAREIFDMMSEL-NVIAWTAMISGY---GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331 (580)
Q Consensus 256 g~~~~A~~~~~~~~~~-~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 331 (580)
+.++...+...+.... .-..|-+-+.++ -.-|+.++++..|-+-. |-+|- +..=+..|...=..++-..+.
T Consensus 287 ~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kpc---c~~Dl~~yl~~l~~~q~~~l~ 361 (932)
T KOG2053|consen 287 KSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKPC---CAIDLNHYLGHLNIDQLKSLM 361 (932)
T ss_pred hhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCcH---hHhhHHHhhccCCHHHHHHHH
Confidence 2222222222221110 111222222222 23466666554443211 22221 111111111111111112222
Q ss_pred HHhHHhcCCCCCHH-------HHHHHHHHHHHcCCH-----HHHHHHHHh-------HcC----CCCC---------HHH
Q 046803 332 ASMRQEYGLLPGVE-------HHVCMVDLFGRAGLL-----NEAYKFVKD-------VIG----EKPA---------PAV 379 (580)
Q Consensus 332 ~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~~A~~~~~~-------~~~----~~p~---------~~~ 379 (580)
.... +..++.. -+.+.+....-.|.+ +.-..++++ .+. .-|. .-+
T Consensus 362 ~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLa 438 (932)
T KOG2053|consen 362 SKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLA 438 (932)
T ss_pred HHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHH
Confidence 2211 1111110 011222222222211 111222211 111 1121 123
Q ss_pred HHHHHHHHHhcCCch---HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 046803 380 WTAMLGACKMHKNFD---LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLKK 444 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 444 (580)
-+.|+..|.+.++.. +|+-+++..+...|.|+..-..|+.+|.-.|-...|.++++.+.-++|+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 557778888877654 66777777788888888888888999998899999999988887666654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.3e-05 Score=75.79 Aligned_cols=98 Identities=11% Similarity=0.030 Sum_probs=51.1
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~ 395 (580)
.+...|++++|...|+++.+. -+.+...|..+..+|.+.|++++|+..+++++...|+ ...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344455555555555555431 1123444555555555555555555555555555552 4445555555555555555
Q ss_pred HHHHHHHHHhcCCCCcchHHH
Q 046803 396 GVEVAEHLLSVEPENPGHYVM 416 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~~~~~~ 416 (580)
|+..|+++++++|+++.....
T Consensus 89 A~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 555555555555555444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-06 Score=51.12 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCC
Q 046803 71 SFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISP 104 (580)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 104 (580)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999888887
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00044 Score=61.97 Aligned_cols=184 Identities=12% Similarity=0.120 Sum_probs=135.0
Q ss_pred cCCHHHHHHHHHhccC--------CChH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCH
Q 046803 255 CGNVSKAREIFDMMSE--------LNVI-AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS-ACAHAGLV 324 (580)
Q Consensus 255 ~g~~~~A~~~~~~~~~--------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~-a~~~~g~~ 324 (580)
..+.++..+++..+.. ++.. .|..++-+....|+.+.|...++++...- |.+.-...+=. -+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4678888888887753 2332 34444556667788899999999988753 55433222221 24457889
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK-PAPAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
++|.++++.+.++ -+.|..++-.-+-+.-..|+--+|++-+.+.+..- .|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999998864 23456777766777777888888888776666433 47999999999999999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHhCCC
Q 046803 404 LSVEPENPGHYVMLSNIYALAG---RMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 404 ~~~~p~~~~~~~~l~~~y~~~g---~~~~a~~~~~~m~~~~~ 442 (580)
+=..|.++..+..+++.+.-.| +..-|.+++.+..+.+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999876555 56677788887776543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.05 E-value=7e-05 Score=61.45 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC---cchHHHHHHHH
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN---PGHYVMLSNIY 421 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y 421 (580)
.++..+.+.|++++|.+.|++.+...|+ ...+..+..++...|+++.|...++++....|++ +.++..++.+|
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444444555555555555444433332 2234444555555555555555555555544443 23444555555
Q ss_pred HhcCChhHHHHHHHHHHh
Q 046803 422 ALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~ 439 (580)
.+.|++++|.+.++.+.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 555555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00012 Score=59.93 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHH
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAML 384 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll 384 (580)
++..+...+...|++++|.+.|..+.+.+.-.+ ....+..+..++.+.|++++|.+.+++.+...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666777788888888877765432111 1345556778888888888888888666654444 45677777
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 788888888888888888888888765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=71.96 Aligned_cols=124 Identities=14% Similarity=0.068 Sum_probs=82.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCCh
Q 046803 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223 (580)
Q Consensus 144 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 223 (580)
-.+|+..+...++++.|..+|+++.+.+...+..++..+...++..+|++++.+..... +-|...+......|.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34455566666777777777777776666666667777777777777777777776542 23444555555566677777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
+.|..+..++.+.. |.+..+|..|..+|.+.|+++.|...++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777664 4455567777777777777777777776665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.002 Score=58.27 Aligned_cols=243 Identities=12% Similarity=0.076 Sum_probs=150.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHH
Q 046803 180 SGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS 259 (580)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 259 (580)
+-+.-.|.+..++..-...... +-+...-.-+-++|...|...... ..+.... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhH
Confidence 3444567777776655444332 234445555666777776653221 1122111 222233332322222233333
Q ss_pred HHH-HHHHhccCC---ChHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 260 KAR-EIFDMMSEL---NVIAWTA-MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 260 ~A~-~~~~~~~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
+-. ++.+.+..+ +..+|.. -...|...|++++|++..+... +......=.....+..+.+-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 223333322 2223332 3456888999999999988722 1222222233455677889999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHhHcC-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 335 RQEYGLLPGVEHHVCMVDLF----GRAGLLNEAYKFVKDVIG-EKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 335 ~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
.+ + .+..+.+.|..++ ...+.+.+|.-+|+++-+ ..|++.+.+-...++...|++++|..+++.++..+++
T Consensus 164 q~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 74 2 3344555454444 456789999999966665 6788999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChhHHHH-HHHHHH
Q 046803 410 NPGHYVMLSNIYALAGRMDRVEV-VRNIMI 438 (580)
Q Consensus 410 ~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~ 438 (580)
+|.+...++..-...|+-.++.. .+..++
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 99999999998888888766543 444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=49.15 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (580)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888999999999999999999998888877
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.4e-05 Score=69.57 Aligned_cols=91 Identities=14% Similarity=0.163 Sum_probs=65.1
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~ 395 (580)
..+.+++++|...|..++ .+.| |...|..-..+|.+.|.++.|++-.+.++.+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 556677777777777776 3444 4666666677777777777777777667777775 5667777777777777777
Q ss_pred HHHHHHHHHhcCCCCc
Q 046803 396 GVEVAEHLLSVEPENP 411 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~ 411 (580)
|++.|+++++++|+|.
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 7777777777777765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00011 Score=64.96 Aligned_cols=83 Identities=14% Similarity=0.068 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 419 (580)
...+..+...+.+.|++++|...|++++...|+ ...+..+...+...|++++|+..++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445666777777788888888888777654443 3567777888888888888888888888888888888888888
Q ss_pred HHHhcCC
Q 046803 420 IYALAGR 426 (580)
Q Consensus 420 ~y~~~g~ 426 (580)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877666
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.9e-06 Score=62.40 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHhHcCCCC---CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 046803 357 AGLLNEAYKFVKDVIGEKP---APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVV 433 (580)
Q Consensus 357 ~g~~~~A~~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 433 (580)
.|++++|+.++++.+...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3566666666655554444 233455566666666777777666666 555555555566667777777777777776
Q ss_pred HHH
Q 046803 434 RNI 436 (580)
Q Consensus 434 ~~~ 436 (580)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00037 Score=66.65 Aligned_cols=265 Identities=10% Similarity=-0.010 Sum_probs=157.5
Q ss_pred HHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhCCChH
Q 046803 149 NFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD-STTCVCVLAACAQLGDID 224 (580)
Q Consensus 149 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~ 224 (580)
+.+.+..++.+|+..+....+ .+..-|..-...+...|++++|+--.++-.+ ++|. .......-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHH
Confidence 445555666666666654433 2444555556666666666666665555443 2222 224444445555555555
Q ss_pred HHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-----CChHHHHHH-HHHHHhcCChHHHHHHHHH
Q 046803 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-----LNVIAWTAM-ISGYGMHGYGTEAVELFHR 298 (580)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 298 (580)
+|.+.++.-. .+ ....|...++.... |...+|-.+ ...+...|++++|.+.--.
T Consensus 135 ~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 5554444100 00 01111111111111 222333333 2345566777777766655
Q ss_pred HHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhHHhcCCCCCHHH-------------HHHHHHHHHHcCCHHHH
Q 046803 299 MRAHGVRPNNVTFVAVLS--ACAHAGLVQEGHRVFASMRQEYGLLPGVEH-------------HVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 299 m~~~g~~pd~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A 363 (580)
.++. .++. .+..++. ++...++.+.|...|++.. .+.|+-.. +..=.+-..+.|++.+|
T Consensus 195 ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 195 ILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 5542 1111 1112222 3344566777777777654 33443211 11123445688999999
Q ss_pred HHHHHhHcCCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 364 YKFVKDVIGEKPA-----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 364 ~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
.+.|.+++.+.|+ +..|.....+..+.|+.++|+.-.+++++++|.-...|..-++++...++|++|.+-+++..
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988775 33466667778899999999999999999999988999999999999999999999999887
Q ss_pred hCC
Q 046803 439 QKG 441 (580)
Q Consensus 439 ~~~ 441 (580)
+..
T Consensus 349 q~~ 351 (486)
T KOG0550|consen 349 QLE 351 (486)
T ss_pred hhc
Confidence 653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.8e-05 Score=54.70 Aligned_cols=60 Identities=18% Similarity=0.345 Sum_probs=31.9
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
...+.+.|++++|.+.|++.+...|+ ...|..+..++...|++++|...|+++++..|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34455555555555555555555553 4455555555555555555555555555555554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00022 Score=70.80 Aligned_cols=103 Identities=12% Similarity=-0.021 Sum_probs=83.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRA 357 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 357 (580)
....+...|++++|+..|++.++... -+...+..+..+|...|++++|...++.+.. +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 35567788999999999999998532 2456777888899999999999999999974 345 577888899999999
Q ss_pred CCHHHHHHHHHhHcCCCCCHHHHHHHHH
Q 046803 358 GLLNEAYKFVKDVIGEKPAPAVWTAMLG 385 (580)
Q Consensus 358 g~~~~A~~~~~~~~~~~p~~~~~~~ll~ 385 (580)
|++++|+..|++++...|+......++.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999988886444444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0002 Score=66.29 Aligned_cols=102 Identities=10% Similarity=0.062 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC---CchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK---NFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
-|...|-.|...|.+.|+++.|..-|.++....|+ +..+..+..++.... ...++..++++++..+|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 37999999999999999999999999999988874 778888877765443 56789999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 418 SNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
+..+...|++.+|...|+.|.+....
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999987544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=64.02 Aligned_cols=95 Identities=11% Similarity=-0.086 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 418 (580)
....|..++..+...|++++|+..|++++...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677778888899999999999888755443 357888999999999999999999999999999888888888
Q ss_pred HHHH-------hcCChhHHHHHHHHH
Q 046803 419 NIYA-------LAGRMDRVEVVRNIM 437 (580)
Q Consensus 419 ~~y~-------~~g~~~~a~~~~~~m 437 (580)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888776666554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00043 Score=61.07 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN--NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCM 350 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 350 (580)
..+..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++..+. .| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 3455555555556666666666665554322221 134444555555555555555555555431 22 23344444
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
..+|...|+...+..-+++++ ..+++|.+.++++++.+|++ |..+...+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~-------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE-------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH-------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 445555444444333331111 11577888888888888875 5555555554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.4e-05 Score=56.32 Aligned_cols=64 Identities=14% Similarity=0.243 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 046803 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG-RMDRVEVVRNIMIQ 439 (580)
Q Consensus 376 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 439 (580)
++.+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888 68888888887765
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00086 Score=57.23 Aligned_cols=125 Identities=9% Similarity=0.062 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHH
Q 046803 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPN--NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMV 351 (580)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li 351 (580)
|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+... ...|. ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33344444 36677777777777776421111 122333445666777777777777777653 22222 22333466
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEK-PAPAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
..+...|++++|+..+ +..+.. ..+..+......+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L-~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATL-QQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHH-HhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777778888888777 333222 23555666777777788888887777765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00076 Score=69.92 Aligned_cols=140 Identities=11% Similarity=-0.003 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHHhc--C---ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHhHH
Q 046803 271 LNVIAWTAMISGYGMH--G---YGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHA--------GLVQEGHRVFASMRQ 336 (580)
Q Consensus 271 ~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~--------g~~~~a~~~~~~~~~ 336 (580)
.|..+|...+.+.... + ...+|..+|++..+ ..||.. .+..+..++... .++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 5677788777765432 2 26688888888887 466653 333332222211 112233333333221
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
......+...|..+.-.....|++++|...+++++...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1112223455666655555667777777777777777777667777777777777777777777777777777654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00018 Score=66.18 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=79.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHc
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRA 357 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 357 (580)
..-+.+.+++.+|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence 3446788999999999999998 454 55666677889999999999998877776 45665 77899999999999
Q ss_pred CCHHHHHHHHHhHcCCCCCHHHHH
Q 046803 358 GLLNEAYKFVKDVIGEKPAPAVWT 381 (580)
Q Consensus 358 g~~~~A~~~~~~~~~~~p~~~~~~ 381 (580)
|++++|++.|++++.+.|+-.+|-
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHH
Confidence 999999999999999999765554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.8e-05 Score=47.18 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHcCCCccHHHHHHHHHHHCCC
Q 046803 72 FLFNTLIIRNSKANFSTDSLLFYRRMIVSNI 102 (580)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 102 (580)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00054 Score=57.88 Aligned_cols=90 Identities=12% Similarity=0.146 Sum_probs=78.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 428 (580)
...-+...|++++|..+|+-..-..| +..-|..|..+|...++++.|+..|..+..++++||.++...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 44445689999999999944334455 57778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 046803 429 RVEVVRNIMIQ 439 (580)
Q Consensus 429 ~a~~~~~~m~~ 439 (580)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998866
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.046 Score=54.69 Aligned_cols=427 Identities=11% Similarity=0.112 Sum_probs=260.0
Q ss_pred CHHHHHHHHhcCCC--CchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCC--CChhhHHHHHHHHH
Q 046803 7 HSPAYEAILKAGPR--LKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS--PDSFLFNTLIIRNS 82 (580)
Q Consensus 7 ~~~~~~~ll~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~ 82 (580)
|..+|..|++-..+ .+..+....+++. -+...+..|...|.......+++...++|.+... -++..|..-|+.-.
T Consensus 19 di~sw~~lire~qt~~~~~~R~~YEq~~~-~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR 97 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQPIDKVRETYEQLVN-VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVR 97 (656)
T ss_pred cHHHHHHHHHHHccCCHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 77889999987643 3677888888764 2445677888888888888999999999997653 57888998887544
Q ss_pred c-CCCccHH----HHHHHHH-HHCCCCCChhh-HH---HHHHH------HHccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 046803 83 K-ANFSTDS----LLFYRRM-IVSNISPSNYT-FS---AVIKS------CAHLSILNLGRAVHCHVFVSGYDSDLHVQAA 146 (580)
Q Consensus 83 ~-~g~~~~A----~~~~~~m-~~~g~~p~~~t-~~---~ll~a------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 146 (580)
+ +|+...+ ...|+-. .+.|+.+-..+ |+ ..+.. +....+++..+++|.+++...+..=...|+-
T Consensus 98 ~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~D 177 (656)
T KOG1914|consen 98 ETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKD 177 (656)
T ss_pred HHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 3 3444332 3344443 34465544332 33 33332 2233456678888888887654332333332
Q ss_pred HH------HH-------HHhCCCHHHHHHHHccCCC------CC---------------hhHHHHHHHHHHhCCCh----
Q 046803 147 LV------NF-------YAKSNNVDVARKVFDRMPD------KS---------------VVAWNSMISGYEQNGFA---- 188 (580)
Q Consensus 147 li------~~-------y~~~g~~~~A~~~f~~~~~------~~---------------~~~~~~li~~~~~~g~~---- 188 (580)
.. +. --+...+..|+++++++.. ++ +..|-.+|.--..++.-
T Consensus 178 Y~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~ 257 (656)
T KOG1914|consen 178 YEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDG 257 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 11 11 1233456677777766531 11 12365566543333221
Q ss_pred ----hHHHHHHHHH-HHCCCCCChhHHH-----HHHHHHHhCCC-------hHHHHHHHHHHHHcCCCCcHHHhhHHhhH
Q 046803 189 ----KEAIGLFNLM-RDFGVNPDSTTCV-----CVLAACAQLGD-------IDLGRWVHEFIVGQGLDVNVVLATSLINM 251 (580)
Q Consensus 189 ----~~A~~~~~~m-~~~g~~p~~~t~~-----~ll~a~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 251 (580)
....-.+++. .-.+..|+..... ..-+.+...|+ .+++..+++..+..-...+..+|..+.+-
T Consensus 258 ~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~ 337 (656)
T KOG1914|consen 258 TMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADY 337 (656)
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111222222 2224444432111 11122333444 34556666666554334455555554432
Q ss_pred hhhcC---CHHHHHHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 046803 252 YARCG---NVSKAREIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGL 323 (580)
Q Consensus 252 y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~ 323 (580)
--..- ..+.....+++... .-..+|-..++.-.+..-...|..+|.+..+.+..+ +.....+++.-++ .++
T Consensus 338 eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD 416 (656)
T KOG1914|consen 338 EESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKD 416 (656)
T ss_pred HHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCC
Confidence 11111 24444445554442 223467777777777778899999999999988888 6667777777555 578
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC--CCC--HHHHHHHHHHHHhcCCchHHHHH
Q 046803 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE--KPA--PAVWTAMLGACKMHKNFDLGVEV 399 (580)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~--~~~~~~ll~~~~~~g~~~~a~~~ 399 (580)
.+.|.++|+.-.+++|-. ...-...++.+...++-..|..+|++.++. .|+ ..+|..++.--..-|+...+.++
T Consensus 417 ~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 417 KETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred hhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999988766543 444567788899999999999999877754 444 57899999999999999999999
Q ss_pred HHHHHhcCCCC----cchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 400 AEHLLSVEPEN----PGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 400 ~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 495 ekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 495 EKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 98887655522 123445666676666655555444444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00033 Score=54.17 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCc
Q 046803 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNF 393 (580)
Q Consensus 315 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~ 393 (580)
...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++.+...|. ..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33444445555555555544321 1112233444555555555555555555444444442 33455555555555666
Q ss_pred hHHHHHHHHHHhcCC
Q 046803 394 DLGVEVAEHLLSVEP 408 (580)
Q Consensus 394 ~~a~~~~~~~~~~~p 408 (580)
+.|...+.++.+..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666655555444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0027 Score=54.21 Aligned_cols=133 Identities=14% Similarity=0.155 Sum_probs=109.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---HHH
Q 046803 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL-PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---PAV 379 (580)
Q Consensus 304 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~ 379 (580)
..|+...-..|..+....|+..+|...|++... |+- .|....-.+.++....+++.+|...+++.+...|+ +..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777888999999999999999999875 554 46777788888999999999999999777755553 445
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
...+...+...|.++.|+..|+.++..-|. +..-......+.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 567788899999999999999999998886 66677778889999999988876666554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0011 Score=63.36 Aligned_cols=135 Identities=13% Similarity=0.184 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA-CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467888888888888999999999998542 2234444444443 333577777999999999865 456778889999
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCCCHH----HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKPAPA----VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
.+.+.|+.+.|..+|++.+..-|... +|...+.--.+.|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999987666544 899999999999999999999999999888743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.8e-05 Score=45.72 Aligned_cols=31 Identities=45% Similarity=0.764 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGV 203 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 203 (580)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=9e-05 Score=54.02 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC-CchHHHHHHHHHHhcCC
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK-NFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 408 (580)
+...|..+...+...|++++|+..|++++...|+ +..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567788888999999999999999999988885 778999999999999 79999999999999887
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00045 Score=65.99 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---hHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHc------CCC-CCHH
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFAS---MRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVI------GEK-PAPA 378 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~-p~~~ 378 (580)
.|..|.+.|.-.|+++.|....+. +.+++|-.. ....+..+..++.-.|+++.|.+.|+..+ +.+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555556667888888876543 234455443 25567778888888999999999996654 222 2355
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc----C--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 379 VWTAMLGACKMHKNFDLGVEVAEHLLSV----E--PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 379 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..+|..+|....+++.|+..+.+-+.+ + .....++.+|+++|...|..+.|....+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6778889999999999999888775432 2 22356889999999999999999887766543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.8e-05 Score=53.31 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=53.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+...+...|++++|+..|+++++..|+++..+..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 56678899999999999999999999999999999999999999999999999987643
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.6e-05 Score=54.56 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 357 AGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 357 ~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
.|++++|+++|++.+...| +..++..+..+|.+.|++++|...++++....|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3444444444433333333 23333344444444444444444444444444443
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00017 Score=52.32 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=48.6
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
...|++++|+..++++++..|+++..+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999987664
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00033 Score=53.37 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=33.3
Q ss_pred cCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 046803 286 HGYGTEAVELFHRMRAHGV-RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 286 ~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 363 (580)
+|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. . ...| +....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3455555555555554322 11222333344555555555555555544 1 1111 112222334455555555555
Q ss_pred HHHH
Q 046803 364 YKFV 367 (580)
Q Consensus 364 ~~~~ 367 (580)
++.+
T Consensus 78 i~~l 81 (84)
T PF12895_consen 78 IKAL 81 (84)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0028 Score=55.68 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=43.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHH---
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACK--- 388 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~--- 388 (580)
+...+...|++++|...|+.......-.+ ...++..+..+|...|++++|++.+++++...|+ ...+..+...+.
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 33334444445555444444432111001 1224444555555555555555555444444442 333444444443
Q ss_pred ----hcCCch-------HHHHHHHHHHhcCCC
Q 046803 389 ----MHKNFD-------LGVEVAEHLLSVEPE 409 (580)
Q Consensus 389 ----~~g~~~-------~a~~~~~~~~~~~p~ 409 (580)
..|+++ +|...++++++..|+
T Consensus 121 ~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 121 EQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 444544 455555566666665
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.12 Score=50.11 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=73.7
Q ss_pred hhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046803 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 328 (580)
+.-+...|....|.++-.+..-||-.-|...+.+|+..++|++-.++... .- .++.|-.++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHHH
Confidence 44456678888888888887778888888888888888888777665432 11 2367777888888888888888
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046803 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367 (580)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 367 (580)
.+...+. +..-+.+|.++|++.+|.+.-
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 7766531 134667788888888887665
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.035 Score=53.31 Aligned_cols=128 Identities=16% Similarity=0.217 Sum_probs=65.1
Q ss_pred hhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhc
Q 046803 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH-GYGTEAVELFHRMRA----HGVRPN--NVTFVAVLSACAHA 321 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~pd--~~t~~~ll~a~~~~ 321 (580)
+..|.+.|++..|-+++.. +...|-.. |++++|++.|++..+ .| .+. ...+..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 3455666666666555443 34455555 667777776666543 12 111 13445556667777
Q ss_pred CCHHHHHHHHHHhHHhcCC----CCCH-HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC------HHHHHHHHHHHH
Q 046803 322 GLVQEGHRVFASMRQEYGL----LPGV-EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA------PAVWTAMLGACK 388 (580)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~----~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~ll~~~~ 388 (580)
|++++|.++|++.....-- ..+. ..+-..+-.+...|++..|.+.+++.....|. ......|+.+|.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 7777777777776543111 1112 12233344555667777777777666655442 233445555553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00044 Score=50.99 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=42.0
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..|.+.+++++|.+.++++++.+|+++..+...+.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.009 Score=50.38 Aligned_cols=97 Identities=9% Similarity=0.031 Sum_probs=62.6
Q ss_pred hhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046803 245 ATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321 (580)
Q Consensus 245 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 321 (580)
.-.+..-+...|++++|.++|+.+.. .+..-|-.|...+...|++++|+..|.......+ -|...+-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 33444455667777777777776553 3445666777777777777777777777766432 2445666666777777
Q ss_pred CCHHHHHHHHHHhHHhcCCCC
Q 046803 322 GLVQEGHRVFASMRQEYGLLP 342 (580)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~p 342 (580)
|+.+.|++.|+..+...+-.|
T Consensus 117 G~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 117 DNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CCHHHHHHHHHHHHHHhccCh
Confidence 777777777777665444333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0018 Score=60.91 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC---cchHHHH
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN---PGHYVML 417 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 417 (580)
..|...+..+.+.|++++|...|++.+...|+ +..+.-+..+|...|++++|...|+.+++..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34554555555667777777777666655554 2456667777777777777777777777766654 4455556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 046803 418 SNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+.+|...|++++|.++++.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777778888888877777653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0082 Score=62.40 Aligned_cols=136 Identities=11% Similarity=0.104 Sum_probs=99.9
Q ss_pred CCCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHHH
Q 046803 303 GVRPNNVTFVAVLSACAHA--G---LVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRA--------GLLNEAYKFVK 368 (580)
Q Consensus 303 g~~pd~~t~~~ll~a~~~~--g---~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 368 (580)
+.+.|...|...+.+.... + ....|..+|+++.+ ..|+ ...|..+..++... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3556778888888875543 2 37789999999874 4676 44555444433221 23445555554
Q ss_pred hHcC--CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 369 DVIG--EKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 369 ~~~~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
+... ..| ++.+|..+.......|++++|...++++++++|. ...|..++.+|...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4332 233 5678888877778889999999999999999994 78999999999999999999999999877553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00078 Score=49.62 Aligned_cols=64 Identities=16% Similarity=0.329 Sum_probs=53.1
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHH
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 415 (580)
..|.+.+++++|.+.++.++...|+ +..|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677889999999999888888884 677888888899999999999999999999988765443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.1 Score=50.59 Aligned_cols=166 Identities=12% Similarity=-0.049 Sum_probs=110.3
Q ss_pred hhHHHHHH-HHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChH-----------
Q 046803 207 STTCVCVL-AACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI----------- 274 (580)
Q Consensus 207 ~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------- 274 (580)
-.++..+- .++...|+.++|.++-..+++.. +.+....-.=..++--.++.+.|...|++....|+.
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMP 246 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhH
Confidence 34444433 34467789999998888887764 222222211223344567889999999887753332
Q ss_pred ----HHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHH
Q 046803 275 ----AWTAMISGYGMHGYGTEAVELFHRMRA---HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEH 346 (580)
Q Consensus 275 ----~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 346 (580)
.|..-.+-..++|++.+|.+.|.+.+. ..++|+...|.....+..+.|+.++|..--+... .+.|. +..
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syika 323 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKA 323 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHH
Confidence 233334445678999999999999886 2345566677777778889999999998777765 34443 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
|..-..++.-.+++++|.+-|++.+....+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444455666778999999999888855444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.025 Score=54.28 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=75.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHH
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA-GLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDL 353 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~ 353 (580)
.+..|...|++..|-..+.++ ...|... |++++|.+.|++...-+..... ...+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 455666777776666555544 4456666 7889999888887654332222 4456678889
Q ss_pred HHHcCCHHHHHHHHHhHcCCC---C----CHH-HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 354 FGRAGLLNEAYKFVKDVIGEK---P----APA-VWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~~---p----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
+.+.|++++|.++|++..... | +.. .+...+-.+...||...|...+++..+..|.-
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999996654211 1 121 23334445667799999999999999888753
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0038 Score=50.66 Aligned_cols=88 Identities=14% Similarity=0.074 Sum_probs=55.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC---CcchHHHHHHHHH
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE---NPGHYVMLSNIYA 422 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~ 422 (580)
+..++-..|+.++|+.+|++.+...++ ...+-.+.+++...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555667777777777666533222 234556666777777777777777777766666 4455555666677
Q ss_pred hcCChhHHHHHHHHH
Q 046803 423 LAGRMDRVEVVRNIM 437 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m 437 (580)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777766543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.19 Score=48.39 Aligned_cols=251 Identities=16% Similarity=0.168 Sum_probs=156.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCChh--HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHH
Q 046803 185 NGFAKEAIGLFNLMRDFGVNPDST--TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262 (580)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 262 (580)
.|+++.|.+-|+.|... |... -+..|.-..-+.|+.+.|+++-+..-..- +.-...+.+.+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 56777777777777641 2211 12223333345677777777766665543 333455667777777888888888
Q ss_pred HHHHhcc-----CCChH--HHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHH
Q 046803 263 EIFDMMS-----ELNVI--AWTAMISGYGM---HGYGTEAVELFHRMRAHGVRPNNVTF-VAVLSACAHAGLVQEGHRVF 331 (580)
Q Consensus 263 ~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~-~~ll~a~~~~g~~~~a~~~~ 331 (580)
++.+.-. ++++. .-..|+.+-+. ..+...|...-.+..+ +.||.+.- ..-..++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 8877544 23332 12223322221 2345555555444443 67776543 33456889999999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 046803 332 ASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE--AYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
+.+-+ ..|.+..+...+ +.|.|+... ....- +....+|| ..+...+..+-...|++..|..-.+.+....|
T Consensus 287 E~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~-~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 287 ETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAK-KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHH-HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 98864 356655553333 345565322 11111 22355675 66677788888899999999999999999998
Q ss_pred CCcchHHHHHHHHHh-cCChhHHHHHHHHHHhCCCccCCceeE
Q 046803 409 ENPGHYVMLSNIYAL-AGRMDRVEVVRNIMIQKGLKKHVGYST 450 (580)
Q Consensus 409 ~~~~~~~~l~~~y~~-~g~~~~a~~~~~~m~~~~~~~~~~~s~ 450 (580)
. .+.|..|+++-.. .|+-.++...+-+..+. +.+|.|+-
T Consensus 361 r-es~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW~a 400 (531)
T COG3898 361 R-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAWTA 400 (531)
T ss_pred h-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcccc
Confidence 7 5788899988764 49999999988877654 34555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.011 Score=47.94 Aligned_cols=107 Identities=17% Similarity=0.085 Sum_probs=71.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---cHHHhhHHhhH
Q 046803 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPD--STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV---NVVLATSLINM 251 (580)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~ 251 (580)
.+..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+++...... +. +..+...+..+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 345667778899999999999888876654 2356667788888889999988888887652 21 22333334446
Q ss_pred hhhcCCHHHHHHHHHhccCCChHHHHHHHHHHH
Q 046803 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYG 284 (580)
Q Consensus 252 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 284 (580)
+...|+.++|.+.+-....++...|.--|..|+
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888887776655444445544444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.011 Score=52.43 Aligned_cols=105 Identities=17% Similarity=0.285 Sum_probs=76.2
Q ss_pred CCChhHHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHH
Q 046803 204 NPDSTTCVCVLAACAQ-----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTA 278 (580)
Q Consensus 204 ~p~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 278 (580)
..|..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~----------- 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA----------- 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-----------
Confidence 3466677777776653 46778888888999999999999999999998876 3321 1112221
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL 323 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 323 (580)
+..-| ..+.+-|++++++|...|+.||..|+..|++.+.+.+.
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 23457899999999999999999999999999976654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.005 Score=48.16 Aligned_cols=81 Identities=15% Similarity=0.028 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCCCcHHH
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGV-NPDSTTCVCVLAACAQLG--------DIDLGRWVHEFIVGQGLDVNVVL 244 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 244 (580)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-+...+|..++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 899999999999987654 23456778889998899999999
Q ss_pred hhHHhhHhhh
Q 046803 245 ATSLINMYAR 254 (580)
Q Consensus 245 ~~~li~~y~~ 254 (580)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0059 Score=47.76 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=67.5
Q ss_pred hHHHHHHHHHcCCCccHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCC--------hHHHHHHHHHHHHhCCCCchHH
Q 046803 73 LFNTLIIRNSKANFSTDSLLFYRRMIVSNI-SPSNYTFSAVIKSCAHLSI--------LNLGRAVHCHVFVSGYDSDLHV 143 (580)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~ 143 (580)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++..- +-....+|+.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 9999999999999875432 3346788999999999999999
Q ss_pred HHHHHHHHHh
Q 046803 144 QAALVNFYAK 153 (580)
Q Consensus 144 ~~~li~~y~~ 153 (580)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0041 Score=59.53 Aligned_cols=130 Identities=12% Similarity=0.121 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHhHcCCCC-CHHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR-AGLLNEAYKFVKDVIGEKP-APAVWTAMLGA 386 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~ 386 (580)
.+|..++....+.+..+.|+.+|.++.+. -..+...|.....+-.+ .++.+.|..+|+..+..-| +...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888989999999999999743 22345556555555444 5666679999988885545 67889999999
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 387 CKMHKNFDLGVEVAEHLLSVEPENP---GHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+...++.+.|..+|++.+..-|.+. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766543 57888888889999999999999988764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.38 Score=49.88 Aligned_cols=131 Identities=11% Similarity=-0.067 Sum_probs=81.4
Q ss_pred ChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHC-CCCC--------ChhhHHHHHHHHHccCChHHH
Q 046803 55 FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-NISP--------SNYTFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 55 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p--------~~~t~~~ll~a~~~~~~~~~a 125 (580)
.+++|.+..+.- |.+..|..|.....+.-.++.|...|-+.-.- |++. +...-..-+. +--|.+++|
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 567777777665 45567888887776666677777766554321 2221 0000011111 234788888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCC-----ChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 046803 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-----SVVAWNSMISGYEQNGFAKEAIGLFNLM 198 (580)
Q Consensus 126 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m 198 (580)
+++|-.+-++. .-|.++.+.|++-...++++.-... -..+|+.+...++....|++|.+.|..-
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88887776554 2466788888888888888754322 1247777777777777777777776553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00027 Score=42.89 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 046803 400 AEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432 (580)
Q Consensus 400 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 432 (580)
|+++++++|+|+.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.46 Score=50.79 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=105.8
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCCC--CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIPS--PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC 116 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 116 (580)
|..+...|-..|-.++.+++|..++++... |+..-...+..+|++-+.+.+-.+.--+|.+ ..+-+.+.|-++++..
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLI 154 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHH
Confidence 677888888888889999999999999876 5544445556677877776543333333322 2333566676777665
Q ss_pred HccC-C---------hHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhCCCHHHHHHHHcc-----CCCCChhHHHHHHH
Q 046803 117 AHLS-I---------LNLGRAVHCHVFVSG-YDSDLHVQAALVNFYAKSNNVDVARKVFDR-----MPDKSVVAWNSMIS 180 (580)
Q Consensus 117 ~~~~-~---------~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-----~~~~~~~~~~~li~ 180 (580)
...- . +..|.+..+.+++.+ ...+..-.-.-.......|.+++|..++.. ...-+...-|--+.
T Consensus 155 lqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 155 LQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred HHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 4321 1 234566666666654 211221122223445678899999999832 22334555566778
Q ss_pred HHHhCCChhHHHHHHHHHHHCC
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFG 202 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g 202 (580)
.+...+++.+..++-.++...|
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhC
Confidence 8889999999999999999876
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0027 Score=60.85 Aligned_cols=255 Identities=15% Similarity=0.063 Sum_probs=159.4
Q ss_pred HHHcCCCccHHHHHHHHHHHCCCCCChh----hHHHHHHHHHccCChHHHHHHHHHHHH--h--CC-CCchHHHHHHHHH
Q 046803 80 RNSKANFSTDSLLFYRRMIVSNISPSNY----TFSAVIKSCAHLSILNLGRAVHCHVFV--S--GY-DSDLHVQAALVNF 150 (580)
Q Consensus 80 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~li~~ 150 (580)
-+++.|+.+..+.+|+..++.|.. |.. .|..+-.+|.-.+++++|.++|..=+. . |- .-.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 478899999999999999988754 443 466667777788899999988754221 1 10 0112233334555
Q ss_pred HHhCCCHHHHHHHHccCC-------CC--ChhHHHHHHHHHHhCCC--------------------hhHHHHHHHHHH--
Q 046803 151 YAKSNNVDVARKVFDRMP-------DK--SVVAWNSMISGYEQNGF--------------------AKEAIGLFNLMR-- 199 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 199 (580)
+--.|.+++|.-.-.+-. .+ ...++..+...|...|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 555677777654432211 11 12344456666655443 123444443221
Q ss_pred --HCCCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHH----cC-CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc--
Q 046803 200 --DFGVN-PDSTTCVCVLAACAQLGDIDLGRWVHEFIVG----QG-LDVNVVLATSLINMYARCGNVSKAREIFDMMS-- 269 (580)
Q Consensus 200 --~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-- 269 (580)
+.|-. .-...|..+.+.|.-+|+++.|...|+.-+. .| -......+..|.++|.-.|+++.|.+.|+...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11100 1123455666666667889999888876543 23 12235577888999999999999999887643
Q ss_pred -----CCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 270 -----ELN--VIAWTAMISGYGMHGYGTEAVELFHRMRAH-----GVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 270 -----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
.+. ..+..+|.+.|.-...+++|+.++.+-+.- ...-....+.+|..++...|..++|..+.....
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 232 345667888888888899999888764421 112234678889999999999999887766544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.083 Score=49.26 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPEN---PGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
.+..-|.+.|.+..|+.-++.+++.-|+. +.+...+..+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34456888999999999999999877764 4566788899999999999999887664
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.078 Score=45.57 Aligned_cols=134 Identities=9% Similarity=0.035 Sum_probs=100.8
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 046803 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350 (580)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 350 (580)
|++.---.|..++...|+..+|...|++...--..-|......+.++....++...|...++.+.+...-..+++..-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44555556888999999999999999998875556677888899999999999999999999887532111134445567
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
...|...|+..+|+.-|+..+..-|++..-......+.++|+.+++..-+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 888999999999999998788777876554444455667777777766555544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0024 Score=63.01 Aligned_cols=98 Identities=11% Similarity=0.038 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP----AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 418 (580)
+...++.+..+|.+.|++++|+..|++++.+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 36677778888888888888888888888888863 34788888888888888888888888876321 121111
Q ss_pred H--HHHhcCChhHHHHHHHHHHhCCCc
Q 046803 419 N--IYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 419 ~--~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
. .+....+.++..++++.+.+-|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112233445666777777766653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.26 Score=45.94 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-H---HHHHHHHHHhCCChHHHHHHHHHHHHc
Q 046803 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDST-T---CVCVLAACAQLGDIDLGRWVHEFIVGQ 236 (580)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t---~~~ll~a~~~~~~~~~a~~~~~~~~~~ 236 (580)
...+-.....+.+.|++++|.+.|+++... -|+.. . ...+..++.+.++++.|...++..++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333333444556667777777777776653 23322 1 133445556666666666666666655
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0058 Score=60.94 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 046803 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDK------SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213 (580)
Q Consensus 140 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 213 (580)
+......+++......+++.+..++.+.... -..+..++++.|.+.|..++++.+++.=...|+-||..|++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444455555555555555555444321 1124457777777777777777777777777777777777777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc
Q 046803 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255 (580)
Q Consensus 214 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 255 (580)
|+.+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777776665444544444444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.012 Score=58.79 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=93.6
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC----CChhH
Q 046803 101 NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVS--GYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD----KSVVA 174 (580)
Q Consensus 101 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~ 174 (580)
+...+......++..+....+++.++.++-..... ....-+.+..++|..|.+.|..+.+..+++.=.+ +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456667777888888888888888877776654 2222345566899999999999999998876554 78889
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhC
Q 046803 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL 220 (580)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 220 (580)
+|.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888777777888888888877765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.012 Score=55.34 Aligned_cols=102 Identities=10% Similarity=0.083 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHH
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAML 384 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll 384 (580)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+..+...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555777777777777776542221 1234455777777788888888888666643342 45566666
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 385 GACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
..+...|+.+.|...|+++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677778888888888888888888753
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.47 Score=46.83 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=48.7
Q ss_pred HHHHHHHHH--HHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 378 AVWTAMLGA--CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 378 ~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
..-|.|..| ...+|++.++.-.-.-+.+..| ++.+|..++-+.....++++|..++..+
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344455444 4678999999888888889999 6999999999999999999999999865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0012 Score=42.94 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHH
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 419 (580)
.+|..+..+|...|++++|+++++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788889999999999999999999999998888777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.047 Score=55.68 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHh
Q 046803 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDM 267 (580)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 267 (580)
+-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|.++|.+ .|. -|..+.+|.....++.|.++...
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~------enRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGH------ENRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCc------hhhHHHHHHHHHHHHHHHHHhhc
Confidence 34455556778888877887654 3455667888888777754 332 13345566666666666665543
Q ss_pred ccC-------CChHHH-------HHHHHHHHhcCChHHHHHHHHH------HHhCCC---CCCHHHHHHHHHHHHhcCCH
Q 046803 268 MSE-------LNVIAW-------TAMISGYGMHGYGTEAVELFHR------MRAHGV---RPNNVTFVAVLSACAHAGLV 324 (580)
Q Consensus 268 ~~~-------~~~~~~-------~~li~~~~~~g~~~~A~~~~~~------m~~~g~---~pd~~t~~~ll~a~~~~g~~ 324 (580)
-.. +.-..| .+-...+...|+.++|..+.-+ +.+-+- ..+..+...+..-+.+...+
T Consensus 684 g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred CChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcccc
Confidence 221 001111 1223344455666666554321 111111 22344555555556667778
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHH-H----------HHHHHHHHhcCCc
Q 046803 325 QEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV-W----------TAMLGACKMHKNF 393 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~----------~~ll~~~~~~g~~ 393 (580)
..|-++|.+|-. ...++++....+++++|..+-++--...||+.. | .---.+|.+.|+-
T Consensus 764 gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 764 GLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred chHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence 888888887732 234778888899999999888433344455321 1 1122344555555
Q ss_pred hHHHHHHHHHH
Q 046803 394 DLGVEVAEHLL 404 (580)
Q Consensus 394 ~~a~~~~~~~~ 404 (580)
.+|.++++++.
T Consensus 834 ~EA~~vLeQLt 844 (1081)
T KOG1538|consen 834 REAVQVLEQLT 844 (1081)
T ss_pred HHHHHHHHHhh
Confidence 55555555543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.41 Score=49.64 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHc---CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVI---GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
..++..|..--...|+++.|+..--..- .+-|-..+|+.|.-+.+....+...-++|-++.
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 3344445555556677777765431111 333445556555444444444444444444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.077 Score=48.20 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC----CCCCHHHHHHHH
Q 046803 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG----LLPGVEHHVCMV 351 (580)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li 351 (580)
-+.++..+.-.|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|+...+..+ +.-...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3456666666777888888888888866566677777888888889999999999987655422 222233333344
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
..|.-++++.+|...+.+.+...| |+...|.-.-...-.|+...|++..+.+++..|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 556667788888888866655555 34444444444455678888888888888887763
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.048 Score=50.87 Aligned_cols=104 Identities=10% Similarity=0.092 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHhHcCCCC-CHHHHH
Q 046803 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG---LLNEAYKFVKDVIGEKP-APAVWT 381 (580)
Q Consensus 306 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~p-~~~~~~ 381 (580)
-|...|..|..+|...|+.+.|..-|....+-.| ++...+..+..++..+. ...++.++|++++..+| |+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3567888888888888888888888888764322 34556666666655432 35678889988888888 467777
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
.|...+...|++.+|...++.|++..|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 788888999999999999999998887653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.2 Score=49.14 Aligned_cols=161 Identities=11% Similarity=0.113 Sum_probs=97.6
Q ss_pred HHhhHhhhcCCHHHHHHHHHhccCC---C----hHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 247 SLINMYARCGNVSKAREIFDMMSEL---N----VIAWTAMISGYGM---HGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 247 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
.++-.|-...+++...++++.+... + ...-....-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777888888888777653 1 1111223334455 7888888888888666556677777776666
Q ss_pred HHHh---------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHH---HhHc------CCC
Q 046803 317 ACAH---------AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE----AYKFV---KDVI------GEK 374 (580)
Q Consensus 317 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~---~~~~------~~~ 374 (580)
.|-. ....++|...|.+. +.+.|+..+--.++..+...|...+ ..++- ...+ ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 22366777777654 3555654443334444444443221 11211 1111 112
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 375 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 375 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
.|--.+.+++.++.-.|+.+.|.++++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344556788999999999999999999999988763
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.013 Score=46.90 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=75.6
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc----chHHHHHHHHHhcCC
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP----GHYVMLSNIYALAGR 426 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~y~~~g~ 426 (580)
-++...|+++.|++.|.+.+..-| .+..||.=..+++-.|+.++|..-+++++++..+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456788999999999988887777 478899999999999999999999999998763322 357778888999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 046803 427 MDRVEVVRNIMIQKGL 442 (580)
Q Consensus 427 ~~~a~~~~~~m~~~~~ 442 (580)
-+.|..-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998877663
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.57 Score=45.51 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACK 388 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~ 388 (580)
.+.+..+.-|...|....|.++-. ++.+ |+...|...+.+|+..+++++-.++. .. +-.+.-|...+.+|.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa-~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFA-KS---KKSPIGYEPFVEACL 248 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHH-hC---CCCCCChHHHHHHHH
Confidence 345556667778898888877654 4444 88889999999999999999988876 32 234567889999999
Q ss_pred hcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 389 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
..|+..+|.....++ .+..-+.+|.++|+|.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888872 2256788999999999998875443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.011 Score=52.43 Aligned_cols=98 Identities=9% Similarity=0.054 Sum_probs=76.5
Q ss_pred HHHHHccC--CCCChhhHHHHHHHHHcC-----CCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-----------
Q 046803 59 AQRIFFCI--PSPDSFLFNTLIIRNSKA-----NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS----------- 120 (580)
Q Consensus 59 A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----------- 120 (580)
-...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+-+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 44566665 457888888888888754 666667777888999999999999999998876421
Q ss_pred -----ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 046803 121 -----ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156 (580)
Q Consensus 121 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 156 (580)
+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345688889999999999999999999888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.48 Score=49.65 Aligned_cols=302 Identities=13% Similarity=0.130 Sum_probs=145.5
Q ss_pred HHHHHhccCChhHHHHHHccCCCCC---hhhHHHHHHHHHcCCCc--cHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 046803 46 LLSLVCDAGFITYAQRIFFCIPSPD---SFLFNTLIIRNSKANFS--TDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLS 120 (580)
Q Consensus 46 ll~~~~~~~~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 120 (580)
+|+-+..++.+..|+++-..+..|- ...+.....-+.+..+. +++++...+=...-. -+..+|..+.+-.-..|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcC
Confidence 3444447778888888888877665 34455555556655332 234444433332222 24456777777777778
Q ss_pred ChHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHhCCCHHHHHHHHccCCCC-ChhHHH--------------HHHH-
Q 046803 121 ILNLGRAVHCHVFVSGYD----SDLHVQAALVNFYAKSNNVDVARKVFDRMPDK-SVVAWN--------------SMIS- 180 (580)
Q Consensus 121 ~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~--------------~li~- 180 (580)
+.+.|..+.+.=...+.. .+..-+..-+.-..+.|+.+-...++-.+.+. +...+. -++.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~ 601 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRH 601 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHh
Confidence 888887776532222110 01111222333344555555555554443321 111111 1110
Q ss_pred -------HHHhCCChhHHHHHHHHH--H----HCCCCCChhHHHHHHHHHHhCCChHHHHHHHH----------HHH-Hc
Q 046803 181 -------GYEQNGFAKEAIGLFNLM--R----DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE----------FIV-GQ 236 (580)
Q Consensus 181 -------~~~~~g~~~~A~~~~~~m--~----~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~----------~~~-~~ 236 (580)
.+-+.++-.+++..|..- . ..|..|+ .....++|++........+..+ .+. +.
T Consensus 602 ~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~ 678 (829)
T KOG2280|consen 602 QDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF 678 (829)
T ss_pred hchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 111122222222222110 0 0122222 2333444444433221111111 111 11
Q ss_pred CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 237 GLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 237 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
|......+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+. ....|.-...
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 2112222222333344556777777777777776777777777777777777766655544432 1344555667
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 367 (580)
+|.+.|+.++|.+++.+.. |.. -.+.+|.+.|++.+|.++-
T Consensus 753 ~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence 7777777777777665442 111 3566677777777776655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.43 Score=43.55 Aligned_cols=197 Identities=15% Similarity=0.114 Sum_probs=115.3
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhcc-----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMS-----ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
..........+...+++..+...+.... ......+......+...+...++...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555555666666666666555443 12334455555555566666666666666665332221 11112222
Q ss_pred -HHHhcCCHHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcC
Q 046803 317 -ACAHAGLVQEGHRVFASMRQEYGL--LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA--PAVWTAMLGACKMHK 391 (580)
Q Consensus 317 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~~g 391 (580)
++...|+++.+...+..... ... ......+......+...++.++|...+.+.+...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56667777777777776632 111 112333333444456677777777777666655554 456667777777777
Q ss_pred CchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+++.|...+.......|.....+..+...+...|.++++...+....+.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777765555666666666666677777777766553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.11 Score=47.33 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=108.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCC--CCh--------hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 046803 144 QAALVNFYAKSNNVDVARKVFDRMPD--KSV--------VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCV 213 (580)
Q Consensus 144 ~~~li~~y~~~g~~~~A~~~f~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 213 (580)
++.|...|.-..-+++-...|+.-.. ..+ ...+.++....-.|.+.-.+.++.+.++...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555544444444444443322 122 23456677777778888888888888886556677777888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcC-----CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHh
Q 046803 214 LAACAQLGDIDLGRWVHEFIVGQG-----LDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGM 285 (580)
Q Consensus 214 l~a~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 285 (580)
.+.-.+.|+.+.|...++...+.. +.-+..+.......|.-.+++..|...|.+++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888888899999988888776543 233333444444567777888888888887765 455666665555566
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHH
Q 046803 286 HGYGTEAVELFHRMRAHGVRPNNVT 310 (580)
Q Consensus 286 ~g~~~~A~~~~~~m~~~g~~pd~~t 310 (580)
.|+..+|++.++.|.+. .|...+
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccch
Confidence 78888888888888874 444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.63 Score=45.04 Aligned_cols=302 Identities=15% Similarity=0.054 Sum_probs=168.6
Q ss_pred ChhHHHHHHccCCCCChhhHHHHHHHHHc--CCCccHHHHHHHHHHHCCCCCChhhHHHHHHHH--HccCChHHHHHHHH
Q 046803 55 FITYAQRIFFCIPSPDSFLFNTLIIRNSK--ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSC--AHLSILNLGRAVHC 130 (580)
Q Consensus 55 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~ 130 (580)
.+..+.+.|..-.. -.-|.+|-.++.- .|+-..|.++-.+-.+. +.-|...+..+|.+- .-.|+.+.|++-|+
T Consensus 68 sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 68 SPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred CcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 44555566644321 2356677666654 46666777666554332 455777777777664 34699999999999
Q ss_pred HHHHhCCCCchH--HHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CC
Q 046803 131 HVFVSGYDSDLH--VQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG-VN 204 (580)
Q Consensus 131 ~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 204 (580)
.|+.. |... -...|.----+.|+.+.|+..-+.... | -.-.|.+.+...+..|+|+.|+++++.-+... +.
T Consensus 145 AMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 88742 1111 112233333567888888877766543 2 23578888999999999999999998776542 34
Q ss_pred CChh--HHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCcHHH-hhHHhhHhhhcCCHHHHHHHHHhccC--CChHHH
Q 046803 205 PDST--TCVCVLAACAQ---LGDIDLGRWVHEFIVGQGLDVNVVL-ATSLINMYARCGNVSKAREIFDMMSE--LNVIAW 276 (580)
Q Consensus 205 p~~~--t~~~ll~a~~~---~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~ 276 (580)
+|.. .-..|+.+-+. ..+...|+..-.+..+. .|+..- .-.-...|.+.|++.++-.+++.+-+ |.+..|
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 4432 22233332211 12445555555555543 333221 22234567777777777777777654 333322
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRA-HGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 354 (580)
.+..+++.|+ .++.-+++... ..++||. .+...+..+-...|++..|..--+... ...|....|..|.+.-
T Consensus 300 --~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIe 372 (531)
T COG3898 300 --LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIE 372 (531)
T ss_pred --HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHH
Confidence 2222333343 33333333332 1244543 445555566666677666665444443 3456666666565554
Q ss_pred HH-cCCHHHHHHHHHhHc
Q 046803 355 GR-AGLLNEAYKFVKDVI 371 (580)
Q Consensus 355 ~~-~g~~~~A~~~~~~~~ 371 (580)
.. .|+-.++...+.+.+
T Consensus 373 eAetGDqg~vR~wlAqav 390 (531)
T COG3898 373 EAETGDQGKVRQWLAQAV 390 (531)
T ss_pred hhccCchHHHHHHHHHHh
Confidence 33 366666666665555
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0033 Score=46.92 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
.|+.+...|.+.|++++|++.|++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555554443
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.018 Score=55.81 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++..|..+|.+.+++..|++...++++++|+|..+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 457778888899999999999999999999999999999999999999999999999999874
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.4 Score=43.43 Aligned_cols=59 Identities=22% Similarity=0.069 Sum_probs=30.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 046803 178 MISGYEQNGFAKEAIGLFNLMRDFGVN--PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236 (580)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 236 (580)
....+.+.|++.+|.+.|+++...-.. --......++.++.+.|+++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666776666666653110 01123444555666666666666666665554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.37 Score=43.69 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=70.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 046803 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPN--NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355 (580)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 355 (580)
.....+.+.|++.+|...|+++...-.... ......++.++.+.|+++.|...++...+.+.-.|... +...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHH
Confidence 344455566777777777776665321111 12344555566666677777666666665554444321 111111111
Q ss_pred HcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch-----------------HHHHH
Q 046803 356 RAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH-----------------YVMLS 418 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~ 418 (580)
........ +.. ....+....|...|+.+++.-|+++.. -..++
T Consensus 89 ~~~~~~~~-------~~~-------------~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 89 YYKQIPGI-------LRS-------------DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHH-------H-T-------------T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccc-------hhc-------------ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000 112223445666666666666664322 22577
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 046803 419 NIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 419 ~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..|.+.|.+..|..-++.+.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH
Confidence 8899999999999999998774
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.026 Score=54.65 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=101.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 358 (580)
-.+.|.+.|++..|..-|++.... |. +...-+.++..... . .-...+..+.-.|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhh
Confidence 355677888888888888876541 00 11111112222111 1 12345666888899999
Q ss_pred CHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH-HHHHHH
Q 046803 359 LLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV-EVVRNI 436 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~ 436 (580)
++.+|++...+.+..+| |+-..--=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+..+..+. .++|..
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989988887 5666666788999999999999999999999999988888888887776665554 778888
Q ss_pred HHhC
Q 046803 437 MIQK 440 (580)
Q Consensus 437 m~~~ 440 (580)
|..+
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 8654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.015 Score=57.68 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHhHcCC
Q 046803 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV----EHHVCMVDLFGRAGLLNEAYKFVKDVIGE 373 (580)
Q Consensus 307 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 373 (580)
+...++.+..+|.+.|++++|...|++..+ +.|+. ..|..+..+|...|++++|++.+++++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446788888899999999999999988773 45653 34777889999999999999999888765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.4 Score=46.42 Aligned_cols=316 Identities=13% Similarity=0.136 Sum_probs=167.5
Q ss_pred CCCCChhhHHH-----HHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC---CHHHHHHHHccCCC--C
Q 046803 101 NISPSNYTFSA-----VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN---NVDVARKVFDRMPD--K 170 (580)
Q Consensus 101 g~~p~~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~~~~--~ 170 (580)
|+..+..-|.. ++.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +.+-+.++=+++.. .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 45444444433 3444455566666666554442111111 445555555555542 22333344444444 3
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHc----------
Q 046803 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN----PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ---------- 236 (580)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------- 236 (580)
..++|.....---+.|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+...+++-.+.+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666677777776666542222111 11222334445555666666655555444432
Q ss_pred -CCCCcHHHhhHHhh---------HhhhcCCHHHHHHHHHhcc-------CCChHHHHHHHHHHHhcCC---hHHH----
Q 046803 237 -GLDVNVVLATSLIN---------MYARCGNVSKAREIFDMMS-------ELNVIAWTAMISGYGMHGY---GTEA---- 292 (580)
Q Consensus 237 -~~~~~~~~~~~li~---------~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~---~~~A---- 292 (580)
..+....+|.-++. .|- .++..++...|..-. +.-..........+++... ..+|
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 11222222222221 122 222222222221100 1111122233344444332 1111
Q ss_pred ---HHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046803 293 ---VELFHRMRA-HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVK 368 (580)
Q Consensus 293 ---~~~~~~m~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 368 (580)
+.+.+.+.. .|..-...|.+--+.-+...|+..+|.++-.+.+ .||...|-.-+.+++..+++++-+++-
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfA- 738 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFA- 738 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHH-
Confidence 222233322 2333344455666667778899999988766553 388888888899999999999988877
Q ss_pred hHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 046803 369 DVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 369 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
+... .+.-|.....+|.+.|+.++|.+.+-+.-.+ .....+|.+.|++.+|.++--
T Consensus 739 kskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 3322 2455777889999999999999887765322 267889999999999987644
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0042 Score=46.38 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSV----EPE---NPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 377 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..+++.+...|...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457889999999999999999999998854 222 245788999999999999999999988654
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.068 Score=53.20 Aligned_cols=78 Identities=6% Similarity=0.012 Sum_probs=43.1
Q ss_pred HHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 361 NEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 361 ~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
.+|.++.++++...| |+.....+..+....++++.|...|+++..++|+.+.+|...+....-+|+.++|.+.+++..
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344555545555554 355555555555555556666666666666666655555555555555666666655555543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.075 Score=45.24 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+...++..+...|++++|...+++++..+|.+...|..++.+|...|+..+|.++++++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566777888899999999999999999999999999999999999999999999988753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.5 Score=45.15 Aligned_cols=379 Identities=12% Similarity=0.091 Sum_probs=219.9
Q ss_pred hhhhchHHHHHhccC----ChhHHHHHHccCCC--CChh-hHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHH
Q 046803 40 RSMLTKLLSLVCDAG----FITYAQRIFFCIPS--PDSF-LFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAV 112 (580)
Q Consensus 40 ~~~~~~ll~~~~~~~----~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 112 (580)
-..|+.|| .-. +++.++.+++.+.. |... -|-....-=.+.|..+.+..+|++-+. |++-....|...
T Consensus 45 f~~wt~li----~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 45 FDAWTTLI----QENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred ccchHHHH----hccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 34456666 333 44555666665543 4443 355555556677888888888888775 355555556555
Q ss_pred HHHHH-ccCChHHHHHHHHHHHHh-CCC-CchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHh---C-
Q 046803 113 IKSCA-HLSILNLGRAVHCHVFVS-GYD-SDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQ---N- 185 (580)
Q Consensus 113 l~a~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~---~- 185 (580)
+.-+. ..|+.+..+..|+.++.. |.. .....|...|..-..++++.....+|+++.+-....++..-.-|.+ .
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQN 199 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcC
Confidence 54443 457777777788777654 321 2345677777777788888888888888776444444444444332 2
Q ss_pred -----CChhHHHHHHHHHHHC----CCCCChhHHHHHHHHHHh-CCChHHHHH------------------------HHH
Q 046803 186 -----GFAKEAIGLFNLMRDF----GVNPDSTTCVCVLAACAQ-LGDIDLGRW------------------------VHE 231 (580)
Q Consensus 186 -----g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~~-~~~~~~a~~------------------------~~~ 231 (580)
-..+++.++=...... -..+.......-+.--.. .+.++.+.. .++
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE 279 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFE 279 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhh
Confidence 2234444433332210 000111111111111111 111122221 111
Q ss_pred HHHHcC-------CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 232 FIVGQG-------LDVNVVLATSLINMYARCGNVSKAREIFDMMSEL---NVIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 232 ~~~~~~-------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
.-++.. .+++..+|...++.-.+.|+.+.+.-+|++..-| -..-|-..+.-.-..|+.+-|-.++....+
T Consensus 280 ~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 280 EGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred hhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 111110 1234567777788788888888888888877643 223455555555555888888777776655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHH---HHHHhHcCCCCCH
Q 046803 302 HGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAY---KFVKDVIGEKPAP 377 (580)
Q Consensus 302 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~p~~ 377 (580)
--++-...+-..-..-+-..|+...|..+++.+..++ |+ +..-..-+....+.|..+.+. +++....+..-+.
T Consensus 360 i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~ 436 (577)
T KOG1258|consen 360 IHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENN 436 (577)
T ss_pred hcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCc
Confidence 3222222222222223456789999999999998753 55 444445567778999999988 6663333333333
Q ss_pred HHHHHHHH-----HHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 378 AVWTAMLG-----ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 378 ~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
.+...+.- .+.-.++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 437 ~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 437 GILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 33333322 23446789999999999999999999999999888776653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.31 Score=39.49 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=81.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046803 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 363 (580)
.-.|..++..++..+.... .+..-++.++--....-+=+-..++++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3467777888888877653 244455555544444444455555555554322222 23444444
Q ss_pred HHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
...+ -.++ .+..-...-+......|.-+.-.+++..+.+.+..+|.....++++|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~-~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECY-AKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHH-HHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHH-HHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444 2222 123334455677788899999999999988766667899999999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.47 Score=48.78 Aligned_cols=95 Identities=13% Similarity=0.037 Sum_probs=48.0
Q ss_pred HHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 046803 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341 (580)
Q Consensus 262 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 341 (580)
.++-+++...+..+...+...+.+...+.-|-++|.+|-.. .+++......++|++|..+-++.. .+.
T Consensus 736 idI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP---e~~ 803 (1081)
T KOG1538|consen 736 IDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP---EFK 803 (1081)
T ss_pred HHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---ccc
Confidence 33333333334444444444455555566666666666431 234455556677777766655443 233
Q ss_pred CCHHH-----------HHHHHHHHHHcCCHHHHHHHHH
Q 046803 342 PGVEH-----------HVCMVDLFGRAGLLNEAYKFVK 368 (580)
Q Consensus 342 p~~~~-----------~~~li~~~~~~g~~~~A~~~~~ 368 (580)
|++.. +.-.-.+|-++|+-.||..+++
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 33211 1112235556677777777773
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.29 Score=48.88 Aligned_cols=158 Identities=9% Similarity=0.067 Sum_probs=108.1
Q ss_pred HHH--HHHHHHHHhc-----CChHHHHHHHHHHHh-CCCCCCHH-HHHHHHHHHHh---------cCCHHHHHHHHHHhH
Q 046803 274 IAW--TAMISGYGMH-----GYGTEAVELFHRMRA-HGVRPNNV-TFVAVLSACAH---------AGLVQEGHRVFASMR 335 (580)
Q Consensus 274 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~pd~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 335 (580)
..| ..++.|.... ...+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555555442 134678888998882 33667654 33333332221 223456666666665
Q ss_pred HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 336 QEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 336 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
.+.| |......+..++.-.|+++.|..+|+++....|| +.+|......+...|+.++|.+.+++.++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3344 5667777777778888899999999999999997 7778888888899999999999999999999986543
Q ss_pred HH--HHHHHHHhcCChhHHHHHHH
Q 046803 414 YV--MLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 414 ~~--~l~~~y~~~g~~~~a~~~~~ 435 (580)
-. ..+++|... ..++|.+++-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHh
Confidence 33 334456655 4667776654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.1 Score=49.71 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=22.4
Q ss_pred HhCCChhHHHHHHHHHHHC--CCCCChhHHHHHHHHHHhCCChHHHHH
Q 046803 183 EQNGFAKEAIGLFNLMRDF--GVNPDSTTCVCVLAACAQLGDIDLGRW 228 (580)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~ 228 (580)
.+..+.++|+..+.+-... ....-..++..+..+.+..|.++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3455666666666555432 001112345555555555555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.1 Score=40.73 Aligned_cols=198 Identities=15% Similarity=0.114 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CCh-HHHHHHHH-H
Q 046803 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--LNV-IAWTAMIS-G 282 (580)
Q Consensus 208 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 282 (580)
..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444445555555555555555554432 2233444555555555666666666666665553 111 22222333 6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc
Q 046803 283 YGMHGYGTEAVELFHRMRAHGVRP----NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRA 357 (580)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 357 (580)
+...|+.++|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 7788888888888888755 233 2334444444567788899999988888752 233 366777788888888
Q ss_pred CCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 358 GLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 358 g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
+++++|...+.......|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8999999999888777776 455566666666777799999999999988876
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.13 Score=42.17 Aligned_cols=49 Identities=10% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 304 VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 304 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
..|+..+..+++.+|+..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666666666666777777766666666665555666655554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.076 Score=46.83 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=96.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcC
Q 046803 282 GYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFGRAG 358 (580)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g 358 (580)
.|-..|-+.-|.--|.+... +.|+. ..|+-+.--+...|+++.|.+.|+... .+.|. -.+.|.=|. +.-.|
T Consensus 74 lYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~---ELDp~y~Ya~lNRgi~-~YY~g 147 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTYNYAHLNRGIA-LYYGG 147 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh---ccCCcchHHHhcccee-eeecC
Confidence 46667777778777777776 67776 467777777889999999999999886 45564 333333333 33568
Q ss_pred CHHHHHHHHHhHcCCC---CCHHHHHHHHH--------------HHHhcCCchH-------------HHHHHHHHHhcCC
Q 046803 359 LLNEAYKFVKDVIGEK---PAPAVWTAMLG--------------ACKMHKNFDL-------------GVEVAEHLLSVEP 408 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~~---p~~~~~~~ll~--------------~~~~~g~~~~-------------a~~~~~~~~~~~p 408 (580)
++.-|.+-+.+--... |-...|.-+.. -+.++.+-.- .+.+++++.+-..
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred chHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 8888877663433333 33344544432 2222211111 1122233332222
Q ss_pred CC-------cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 409 EN-------PGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 409 ~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
++ ..+|.-|+.-|...|..++|..+|+.....+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 22 3578889999999999999999999887654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.2 Score=40.38 Aligned_cols=86 Identities=10% Similarity=0.054 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcC------CCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhc----CCCCcchHHHH
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIG------EKPAP-AVWTAMLGACKMHKNFDLGVEVAEHLLSV----EPENPGHYVML 417 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l 417 (580)
.....|.+..++++|-..+.+... .-|+. ..+.+.+-.+....++..|+..++.-.+. +|++..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 344555666666666555533321 11221 22444455555556777777777765443 25555666666
Q ss_pred HHHHHhcCChhHHHHHHH
Q 046803 418 SNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~ 435 (580)
+.+| ..|+.+++.++..
T Consensus 235 L~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHh-ccCCHHHHHHHHc
Confidence 6666 3456666665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.29 Score=40.66 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=33.5
Q ss_pred HHHcCCHHHHHHHHHhHc---CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 354 FGRAGLLNEAYKFVKDVI---GEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
..+.|++++|.+.|+... +..| ....-..|+.+|.+.+++++|...+++.++++|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 335666666666663322 2222 234445566666677777777777777777666654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.97 Score=44.49 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=49.0
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCCC---C----hhHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 046803 146 ALVNFYAKSNNVDVARKVFDRMPDK---S----VVAWNSMISGYEQ---NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215 (580)
Q Consensus 146 ~li~~y~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 215 (580)
.|+-.|-...+++...++++.+... + ...--...-++-+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444588888888888888887763 1 1112233445556 7888888888888665556777788877776
Q ss_pred HHH
Q 046803 216 ACA 218 (580)
Q Consensus 216 a~~ 218 (580)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.42 Score=39.76 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=46.4
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-H-HHHHHHHHHHHh--c---
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-P-AVWTAMLGACKM--H--- 390 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~-~~~~~ll~~~~~--~--- 390 (580)
.+.|++++|.+.|+.+..++...| .....-.|+.+|.+.|++++|...+++-+...|+ + .-|...+.++.. .
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence 345666666666666655443333 2334444566666666666666666555544432 1 112222222111 1
Q ss_pred ------------CCchHHHHHHHHHHhcCCCC
Q 046803 391 ------------KNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 391 ------------g~~~~a~~~~~~~~~~~p~~ 410 (580)
+....|...|+++++.-|++
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 12456777777777777764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.32 Score=41.35 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
....++..+...|++++|.++.+..+...| |...|..++.++...|+...|.+.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455677888899999999999988888888 68889999999999999999999999875
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.2 Score=46.25 Aligned_cols=94 Identities=15% Similarity=0.217 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC---CcchHHHHH
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE---NPGHYVMLS 418 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~ 418 (580)
.|+.-++.| +.|++.+|.+.|.+-+..-|+ +..+-=|..++...|+++.|...|..+.+-.|. -|..+..|+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455544433 566677777777655543332 233444667777777777777777777765544 345677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 046803 419 NIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 419 ~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
....+.|+.++|..+|+.+.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.21 Score=40.98 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc---CCCCCHHHHHHHHHHHHh
Q 046803 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI---GEKPAPAVWTAMLGACKM 389 (580)
Q Consensus 339 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~ll~~~~~ 389 (580)
.+.|+..+..+++.+|+..|++..|+++++... ++.-+..+|..|+.-+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 445667777777777777777777777774333 433346667777665543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.5 Score=40.22 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=22.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 416 MLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 416 ~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++..|.+.|.|.-|..-++.|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 5778899999999999999999875
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.40 E-value=3.2 Score=41.19 Aligned_cols=408 Identities=9% Similarity=0.067 Sum_probs=223.8
Q ss_pred HHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCCCCCh---hhHHHHHHHHHcCCCccHHHHHHHHHHHCCC
Q 046803 26 QVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDS---FLFNTLIIRNSKANFSTDSLLFYRRMIVSNI 102 (580)
Q Consensus 26 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 102 (580)
++.+.+... ..|+..|-+||.-+...+.+++-++++++|..|-+ .+|..-|++-....+++....+|.+.+....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 455554432 34788899999888889999999999999988654 4799999988888999999999999887644
Q ss_pred CCChhhHHHHHHHHHccCChHH------HHHHHHHHHH-hCCCC-chHHHHHHHHHHH---------hCCCHHHHHHHHc
Q 046803 103 SPSNYTFSAVIKSCAHLSILNL------GRAVHCHVFV-SGYDS-DLHVQAALVNFYA---------KSNNVDVARKVFD 165 (580)
Q Consensus 103 ~p~~~t~~~ll~a~~~~~~~~~------a~~~~~~~~~-~g~~~-~~~~~~~li~~y~---------~~g~~~~A~~~f~ 165 (580)
. ...|..-+.-..+.+..-. --+.|+.++. .++.| ....|+..++..- ...++|..++.+.
T Consensus 108 ~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred c--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4 4455555554444433222 2234444443 23443 3345666555432 2234566677777
Q ss_pred cCCCC---Ch-------hHHHHHHHHHHh---CC----ChhHHHHHHHHHHH--CCCCC----ChhHHHHH---------
Q 046803 166 RMPDK---SV-------VAWNSMISGYEQ---NG----FAKEAIGLFNLMRD--FGVNP----DSTTCVCV--------- 213 (580)
Q Consensus 166 ~~~~~---~~-------~~~~~li~~~~~---~g----~~~~A~~~~~~m~~--~g~~p----~~~t~~~l--------- 213 (580)
++... |. ..|..=+.-... -| -+-.|...+++... .|... +..|++-+
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 76541 11 122111111111 01 13445555555542 23321 22232221
Q ss_pred --HHHHHhCC-----C--hHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CChH--------
Q 046803 214 --LAACAQLG-----D--IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--LNVI-------- 274 (580)
Q Consensus 214 --l~a~~~~~-----~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~-------- 274 (580)
|..=...| + ....--+|++.+.. +.....+|----.-+...++-+.|......-.+ |...
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ye 344 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYE 344 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHh
Confidence 21111100 0 01111223333222 122233333333333455667777776655432 2210
Q ss_pred ----------HHHHHHHHHHh---cCChHHHHHH------HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 275 ----------AWTAMISGYGM---HGYGTEAVEL------FHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 275 ----------~~~~li~~~~~---~g~~~~A~~~------~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
+|..++..+.+ .+..+.+... ..+..-....--...|...+++-.+..-++.|+.+|-++.
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 12222222221 1111111110 0111000001122456667777777788899999999987
Q ss_pred HhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHH-HHHHHHHHhcCCchHHHHHHHHHHhcCCC--Cc
Q 046803 336 QEYG-LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW-TAMLGACKMHKNFDLGVEVAEHLLSVEPE--NP 411 (580)
Q Consensus 336 ~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~ 411 (580)
+. + +.+++..+++++.-++ .|+..-|..+|+-.+..-||...| .-.+.-+...++-+.|..+|+..++.-.. -.
T Consensus 425 k~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k 502 (660)
T COG5107 425 KE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLK 502 (660)
T ss_pred cc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhh
Confidence 65 5 5678888888888664 678888999997777666775543 44555666778888888888865542221 14
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 412 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..|..++.--..-|+...+..+=++|.+.
T Consensus 503 ~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 503 RIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 57777777777888887777776666553
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.45 Score=45.00 Aligned_cols=148 Identities=9% Similarity=-0.027 Sum_probs=63.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH----HHHHHHcCCHH
Q 046803 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM----VDLFGRAGLLN 361 (580)
Q Consensus 286 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~ 361 (580)
.|+..+|-..++++.+. .+.|...+...-.+|...|+...-...++++.. ...|+...|.-+ .-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444444445554442 233444444444455555555555554444442 223333222221 12223455555
Q ss_pred HHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 362 EAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE----NPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 362 ~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
+|++.-++++.++| |.-.-.++.......|+..++.+...+-...-.. -...|-..+-.|...+.++.|.++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 55555555555444 3333344444444555555555444432211000 012233444444444555555555544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.081 Score=46.03 Aligned_cols=90 Identities=9% Similarity=0.141 Sum_probs=74.9
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCCCH------HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKPAP------AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 425 (580)
.-+...|++++|..-|.+++..-|.. ..|..=..+..+.+.++.|+.-..++++++|.+..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44667899999999998888666542 335555567788999999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 046803 426 RMDRVEVVRNIMIQKG 441 (580)
Q Consensus 426 ~~~~a~~~~~~m~~~~ 441 (580)
++++|.+-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999998754
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.31 E-value=1 Score=45.99 Aligned_cols=157 Identities=12% Similarity=0.103 Sum_probs=100.4
Q ss_pred HHHcCCCccHHHHHHH--HHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 046803 80 RNSKANFSTDSLLFYR--RMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNV 157 (580)
Q Consensus 80 ~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 157 (580)
...-+++++++.++.+ ++.. .+ +..-...+++-+.+.|..+.|.++ ..|+. .-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~---------~~D~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQF---------VTDPD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHH---------SS-HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhh---------cCChH---HHhHHHHhcCCH
Confidence 3445678888776665 2221 12 233467777778888888888876 23332 234557789999
Q ss_pred HHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 046803 158 DVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237 (580)
Q Consensus 158 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 237 (580)
+.|.++-++.. +...|..|.....++|+++-|.+.|.+..+ |..++-.|.-.|+.+.-.++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99999988765 667999999999999999999999887643 4556666777888888888887777766
Q ss_pred CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhc
Q 046803 238 LDVNVVLATSLINMYARCGNVSKAREIFDMM 268 (580)
Q Consensus 238 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 268 (580)
. +|....++.-.|++++..+++.+.
T Consensus 404 -~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 444445555567777777766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.4 Score=39.82 Aligned_cols=143 Identities=13% Similarity=0.074 Sum_probs=77.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 046803 282 GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLN 361 (580)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 361 (580)
.....|+..+|..+|+........ +......+..++...|+++.|..++..+..+. -.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCC
Confidence 445566777777777766653211 23444556666777777777777776654321 0011111223344455555444
Q ss_pred HHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCh
Q 046803 362 EAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVE--PENPGHYVMLSNIYALAGRM 427 (580)
Q Consensus 362 ~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~ 427 (580)
+..++- +.....| |...-..|...+...|+.+.|.+.+-.+++.+ -.|...-..|+.++.-.|.-
T Consensus 221 ~~~~l~-~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 221 EIQDLQ-RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 444444 3334455 45555566666667777777766666655443 33455556666666655533
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=5.9 Score=42.78 Aligned_cols=79 Identities=18% Similarity=0.067 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC
Q 046803 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222 (580)
Q Consensus 143 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 222 (580)
.-..-+..+.+.++++...+.+..- ..+...-.....+....|+.++|.+..+.+-..| ...+.....++..+.+.|.
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 3344455566778888888744332 3455555666777888888888877777776555 2234455556666555444
Q ss_pred h
Q 046803 223 I 223 (580)
Q Consensus 223 ~ 223 (580)
+
T Consensus 179 l 179 (644)
T PRK11619 179 Q 179 (644)
T ss_pred C
Confidence 3
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.25 Score=45.62 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=42.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHH
Q 046803 285 MHGYGTEAVELFHRMRAHGVRP--NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLN 361 (580)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 361 (580)
+.|++.+|...|...++....- ....+-.|..++...|++++|..+|..+.++++-.|. ++.+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3444555555555555432110 0112334555555555555555555555554444443 244444445555555555
Q ss_pred HHHHHHHhHcCCCC
Q 046803 362 EAYKFVKDVIGEKP 375 (580)
Q Consensus 362 ~A~~~~~~~~~~~p 375 (580)
+|...|++.+..-|
T Consensus 233 ~A~atl~qv~k~YP 246 (262)
T COG1729 233 EACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHHHCC
Confidence 55555544443334
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.7 Score=44.92 Aligned_cols=160 Identities=15% Similarity=0.176 Sum_probs=102.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHH----hcCCHHHHHHHHHHhHHhcCCCCCHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRAH-GVRPNN-----VTFVAVLSACA----HAGLVQEGHRVFASMRQEYGLLPGVEH 346 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~ 346 (580)
..+++...-.|+-+.+++++.+..+. ++.-.. .+|..++..+. .....+.|.++++.+.+.+ |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 33444444556666666666655442 222111 12333333222 2456788999999998654 65444
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHhHcCCCC-----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH-HH
Q 046803 347 HV-CMVDLFGRAGLLNEAYKFVKDVIGEKP-----APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML-SN 419 (580)
Q Consensus 347 ~~-~li~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~~ 419 (580)
|. --...+...|++++|++.|++++..+. ....+--+...+....++++|...+.++.+.+.-....|..+ +.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 43 345667788999999999976663221 123355566778889999999999999998776555555544 55
Q ss_pred HHHhcCCh-------hHHHHHHHHHHh
Q 046803 420 IYALAGRM-------DRVEVVRNIMIQ 439 (580)
Q Consensus 420 ~y~~~g~~-------~~a~~~~~~m~~ 439 (580)
+|...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 66788888 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.04 Score=33.20 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777777777777777777777777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.8 Score=40.60 Aligned_cols=121 Identities=11% Similarity=0.077 Sum_probs=88.7
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHH---HHHHHHhcCCc
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA---MLGACKMHKNF 393 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~ 393 (580)
.....|+..+|...|...... .+-+...--.|+..|...|+.++|..++ ..++.+-...-|.. -+....+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL-~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAIL-AALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHH-HhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456789999999999988753 2224556667899999999999999999 88766543333333 23334444444
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 394 DLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 394 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
.+... +++-...+|+|...-..|+..|...|+.++|.+.+-.+.+++
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44333 334445789999999999999999999999999988887654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.06 Score=32.28 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.87 E-value=4.6 Score=40.14 Aligned_cols=133 Identities=13% Similarity=0.123 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV-EHHVCMV 351 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li 351 (580)
..|...++.-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+...|..+|+.-...+ ||. ..-.-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 467778888778888899999999999988 6778888888887654 688999999998876543 443 3334567
Q ss_pred HHHHHcCCHHHHHHHHHhHcC-CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 352 DLFGRAGLLNEAYKFVKDVIG-EKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
..+.+.++-+.|..+|+..++ +..+ ..+|..++.--...|+...+..+-+++.+.-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 778899999999999976663 2222 4678888888889999999988888888887763
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.07 Score=34.48 Aligned_cols=39 Identities=21% Similarity=0.521 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHH
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAML 384 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll 384 (580)
.+..+...|.+.|++++|.++|++.+...|+ +..|..|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4566778888888888888888777777774 66666554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.85 E-value=3.1 Score=41.30 Aligned_cols=151 Identities=7% Similarity=-0.074 Sum_probs=81.1
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh-cCCCCCHHH
Q 046803 271 LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP---NNVTFVAVLSACAHAGLVQEGHRVFASMRQE-YGLLPGVEH 346 (580)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 346 (580)
....+|..++....+.|+++.|...+.++...+..+ +......-....-..|+..+|...++..... .....+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 445678888888888888888888888877643211 2233334455566678888888887777651 111111111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc------CCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH------KNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
...+...+.. ..+.....-........-..++..+..-+... ++.+++...|.++.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000000000000123344444444444 788899999999999999887777777776
Q ss_pred HHh
Q 046803 421 YAL 423 (580)
Q Consensus 421 y~~ 423 (580)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.83 E-value=5.6 Score=44.48 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCC--CccHHHHHHHHHHH
Q 046803 74 FNTLIIRNSKAN--FSTDSLLFYRRMIV 99 (580)
Q Consensus 74 ~~~li~~~~~~g--~~~~A~~~~~~m~~ 99 (580)
.-.+|..|++.+ ..++|+....+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 345667777776 55666666666553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.24 Score=45.61 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=73.8
Q ss_pred hHHHHHHccCC--CCChhhHHHHHHHHHcC-----CCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC--------
Q 046803 57 TYAQRIFFCIP--SPDSFLFNTLIIRNSKA-----NFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI-------- 121 (580)
Q Consensus 57 ~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-------- 121 (580)
-..++.|...+ ++|-.+|-+++..+... +..+-....++.|.+-|+.-|..+|+.||..+-+-.-
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34566777777 68889999998887654 5566666778889999999999999999988755321
Q ss_pred --------hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 046803 122 --------LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156 (580)
Q Consensus 122 --------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 156 (580)
-+-+..++++|...|+.||..+-..|++++++.+-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 22366677777777777777777777777766654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.38 Score=45.44 Aligned_cols=116 Identities=9% Similarity=-0.005 Sum_probs=94.4
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC-CCCHHHHH----HHHHHHHhcCCch
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE-KPAPAVWT----AMLGACKMHKNFD 394 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~----~ll~~~~~~g~~~ 394 (580)
..|+..+|-..++++.++ .+.|...+.-.-+++.-.|+.+.-...+++.++. .||...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457788888888998874 4456777777778889999999999999888876 67754433 3444556889999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
+|++..+++++++|.|.-+...++.++...|+..++.+...+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999999999999999999999999887654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.37 Score=41.04 Aligned_cols=84 Identities=12% Similarity=0.042 Sum_probs=33.7
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHH
Q 046803 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR 262 (580)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 262 (580)
-+.|++++|..+|+-+...+ .-|..-+..|..++-..+.+++|...|......+ ..|+...--...+|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 34444555555444444321 1122223333333333444444444444444332 122222333344444444444444
Q ss_pred HHHHhc
Q 046803 263 EIFDMM 268 (580)
Q Consensus 263 ~~~~~~ 268 (580)
..|...
T Consensus 126 ~~f~~a 131 (165)
T PRK15331 126 QCFELV 131 (165)
T ss_pred HHHHHH
Confidence 444433
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.49 E-value=15 Score=44.47 Aligned_cols=310 Identities=11% Similarity=0.072 Sum_probs=170.9
Q ss_pred HHHHHccCChHHHHHHHHHH----HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHc-cCCCCChhHHHHHHHHHHhCCC
Q 046803 113 IKSCAHLSILNLGRAVHCHV----FVSGYDSDLHVQAALVNFYAKSNNVDVARKVFD-RMPDKSVVAWNSMISGYEQNGF 187 (580)
Q Consensus 113 l~a~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~-~~~~~~~~~~~~li~~~~~~g~ 187 (580)
..+--+.+.+..|...++.- .+. ......+-.+...|+.-+++|...-+.. ....++. ..-|......|+
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 33444566677776666652 111 1123344555668888888888777766 3433332 234555667899
Q ss_pred hhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHH-hhHhhhcCCHHHHHHHH
Q 046803 188 AKEAIGLFNLMRDFGVNPD-STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL-INMYARCGNVSKAREIF 265 (580)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~y~~~g~~~~A~~~~ 265 (580)
+..|..-|+++.+. .|+ ..+++.++......+.++......+-.... ..+....++++ +.+--+.++++......
T Consensus 1465 ~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999875 344 667888887777777777766644444333 23444444333 34445667777666655
Q ss_pred HhccCCChHHHHHH--HHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------
Q 046803 266 DMMSELNVIAWTAM--ISGYGMHG--YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS-------- 333 (580)
Q Consensus 266 ~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~-------- 333 (580)
. ..+..+|.+. +..+.+.. +.-.-.++.+.+.+.-+.| +.+|+..|.+..+.++.-+
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 5 4555666554 22222221 1111112333332211111 1122222222122111111
Q ss_pred --hHHhcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHhHc---CCCCC-----HHHHHHHHHHHHhcCCchHHH
Q 046803 334 --MRQEYGLLPGV------EHHVCMVDLFGRAGLLNEAYKFVKDVI---GEKPA-----PAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 334 --~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~p~-----~~~~~~ll~~~~~~g~~~~a~ 397 (580)
.....+..++. ..|..-+..=....+..+-+--+++.+ ..+|+ ..+|......++..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 11111233321 122222221111122222222222222 22332 567999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 398 EVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
...-.+.+..+ +..+...+......|+...|..+++...+....
T Consensus 1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 99888887774 578999999999999999999999998876543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.49 E-value=2 Score=43.27 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPE--NPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 381 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..|...+.+.|+.++|++.++++++..|. +......|++.+...+++.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555666667777777777777665543 344566677777777777777777666543
|
The molecular function of this protein is uncertain. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.45 E-value=5.9 Score=39.52 Aligned_cols=117 Identities=17% Similarity=0.190 Sum_probs=76.4
Q ss_pred HHhcCC-hHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhc---CCHHHHHHHHHHhHHhcCCCC----CHHHHHH
Q 046803 283 YGMHGY-GTEAVELFHRMRAHGVRPNNV-----TFVAVLSACAHA---GLVQEGHRVFASMRQEYGLLP----GVEHHVC 349 (580)
Q Consensus 283 ~~~~g~-~~~A~~~~~~m~~~g~~pd~~-----t~~~ll~a~~~~---g~~~~a~~~~~~~~~~~~~~p----~~~~~~~ 349 (580)
+-+.|. -++|+++++...+ +.|... ++..+=.+|.+. ..+.+-..+-+- ..+-|+.| +....|.
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f-i~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF-ITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHhcCCCcccccHHHHHHH
Confidence 334555 7889999998877 333322 233333344332 223333333333 34558877 3556777
Q ss_pred HHHH--HHHcCCHHHHHHHHHhHc-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 350 MVDL--FGRAGLLNEAYKFVKDVI-GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 350 li~~--~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
|.++ +...|++.++.-.- ..+ .+.|++.+|..+.-....+.++++|...+..+
T Consensus 466 LaDAEyLysqgey~kc~~ys-~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYS-SWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 7765 56789999987665 443 78899999999998889999999999887754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.32 E-value=2 Score=41.25 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=27.2
Q ss_pred hCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHhCCChhHHHHH
Q 046803 153 KSNNVDVARKVFDRMPDK------SVVAWNSMISGYEQNGFAKEAIGL 194 (580)
Q Consensus 153 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 194 (580)
...+.+.|+..+.+...+ -..++..+..+..+.|.+++++..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 456677777776655442 124566677777888888777654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.47 Score=38.35 Aligned_cols=91 Identities=12% Similarity=-0.049 Sum_probs=62.6
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-----HHHHHHHHHHHHhcC
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-----PAVWTAMLGACKMHK 391 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g 391 (580)
+.+..|+++.|.+.|.+... -.+-....||.-..++.-+|+.++|++=+++++...-+ -..|..=...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45667888888888877763 22235777888888888888888888877777643221 122444455678888
Q ss_pred CchHHHHHHHHHHhcCCC
Q 046803 392 NFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~p~ 409 (580)
+.+.|..-|+.+-+++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888777754
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.23 E-value=1.8 Score=44.81 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 046803 288 YGTEAVELFHRMRAHGVRPNNVTFVAVL-SACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 288 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 364 (580)
..+.|.++++.+.+ .-|+...|...- ..+...|++++|.+.|+.......--+. ...+--+.-.+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 45566666666665 245555444332 2455566666666666654321011111 222333444556667777777
Q ss_pred HHHHhHcCCCC-CHHHHHHHHHHH-HhcCCc-------hHHHHHHHHHHh
Q 046803 365 KFVKDVIGEKP-APAVWTAMLGAC-KMHKNF-------DLGVEVAEHLLS 405 (580)
Q Consensus 365 ~~~~~~~~~~p-~~~~~~~ll~~~-~~~g~~-------~~a~~~~~~~~~ 405 (580)
+.|.+...... +..+|..+..+| ...|+. ++|.++++++-.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 77755444332 233444333333 345555 666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.19 E-value=4.8 Score=40.74 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=31.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
+..+.-+.|+.++|++.|++|.+....- +....-.|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4445556666666666666666532111 1224445666666666666666666554
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.13 E-value=3 Score=34.96 Aligned_cols=44 Identities=20% Similarity=0.104 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc
Q 046803 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC 255 (580)
Q Consensus 211 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 255 (580)
..++..+...+.......+++.+.+.+ +.+....|.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 345555555566666666666666665 35556666666666654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.42 Score=44.07 Aligned_cols=99 Identities=13% Similarity=0.188 Sum_probs=75.7
Q ss_pred HHHHHHccCC--CCChhHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC----------
Q 046803 159 VARKVFDRMP--DKSVVAWNSMISGYEQN-----GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG---------- 221 (580)
Q Consensus 159 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------- 221 (580)
..++.|...+ ++|..+|-+++..+... +..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677666 57888888888877654 556667777888999999999999999998875432
Q ss_pred ------ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCC
Q 046803 222 ------DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257 (580)
Q Consensus 222 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 257 (580)
.-+-+..++++|...|+.||..+-..|++++++.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224567788888888888888888888888877664
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.9 Score=43.99 Aligned_cols=129 Identities=13% Similarity=0.077 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCC
Q 046803 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGY 288 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (580)
-...++.-+.+.|..+.|.++-..-. .-.+...++|+++.|.++-++.. +...|..|......+|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 34555555556666666655532211 12234456677777766654443 45567777777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046803 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367 (580)
Q Consensus 289 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 367 (580)
.+-|.+.|++..+ |..|+-.|.-.|+.+.-.++.+..... | -++....++.-.|++++..+++
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777766542 334555555666665555555444321 1 1222333333445666555555
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.11 Score=48.90 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=80.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK 391 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g 391 (580)
-.+-|.++|.+++|+..|.... .+.| +..++..-..+|.+..++..|..=...++..... ...|+-=+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556888999999999998766 4556 7888888888999999999888877666654321 334555566666778
Q ss_pred CchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 046803 392 NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 431 (580)
+..+|.+-++.+++++|++.. |-..|.+.....++.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 899999999999999998543 334444444444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.68 E-value=3.7 Score=34.42 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=24.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 046803 111 AVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKS 154 (580)
Q Consensus 111 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 154 (580)
.++..+...+.......+++.+++.+ ..+....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44555555555666666666666555 24555666666666654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.55 E-value=4.9 Score=36.64 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046803 276 WTAMISGYGMHGYGTEAVELFHRMRAHG---VRPNNVTFVAVLSACAHAGLVQEGHRVF 331 (580)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 331 (580)
|-+.|-.|....++..|...++.--+.+ -.-|..+...||.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3334444455556666666666533311 112334566666655 346666655554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=7.8 Score=37.00 Aligned_cols=237 Identities=9% Similarity=0.013 Sum_probs=112.4
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCChhHHHHH
Q 046803 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFA----KEAIGLFNLMRDFGVNPDSTTCVCV 213 (580)
Q Consensus 138 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 213 (580)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+... .||...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 344444444555555555433333333323344555555555556666653 3566666655332 3455555555
Q ss_pred HHHHHhCCChHH--HHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcC-ChH
Q 046803 214 LAACAQLGDIDL--GRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHG-YGT 290 (580)
Q Consensus 214 l~a~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 290 (580)
+.++...+.... .......+...-..++..+-...+.++++.|+.+....+...+..+|...-..-+.++.+.+ ...
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 555544432110 11122222221123355555566666666666433333333333455444444444454432 234
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhH
Q 046803 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 370 (580)
.+...+..+.. .+|...-...+.++.+.|+. .+...+-...+. ++ .....+.+++..|.. +|...+.+.
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 55555555553 34555555566666666663 344333333321 22 123456666666664 566666555
Q ss_pred cCCCCCHHHHHHHHHHH
Q 046803 371 IGEKPAPAVWTAMLGAC 387 (580)
Q Consensus 371 ~~~~p~~~~~~~ll~~~ 387 (580)
+...||..+-...+.+|
T Consensus 261 ~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 261 LYKFDDNEIITKAIDKL 277 (280)
T ss_pred HhhCCChhHHHHHHHHH
Confidence 55555655544444444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.71 E-value=9.9 Score=37.65 Aligned_cols=66 Identities=12% Similarity=0.255 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP----ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 376 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
...+|..+...+++.|.++.|...+.++.+.++ ..+.....-+......|+..+|...++...+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999988652 246677778899999999999999998887733
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.63 E-value=9.8 Score=36.36 Aligned_cols=60 Identities=7% Similarity=-0.055 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 209 TCVCVLAACAQLGDID---LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
++..++.++...+..+ +|..+.+.+.... +..+.++-.-+..+.+.++.+++.+++.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 3444445554444333 3334444443221 2223333333444444555555555555554
|
It is also involved in sporulation []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.13 E-value=9.7 Score=35.16 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPG---HYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+..-|.+.|.+..|..-++++++.-|+.+. .+..|.++|...|-.++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 4456688999999999999999987766544 455677889999999999988776654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.93 E-value=20 Score=38.42 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q 046803 176 NSMISGYEQNGFAKEAIGLFNLMR 199 (580)
Q Consensus 176 ~~li~~~~~~g~~~~A~~~~~~m~ 199 (580)
..|+..|...+++..|+.++-..+
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 347788888888888888877665
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.26 Score=29.42 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 046803 379 VWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 379 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
+|..+...+...|++++|...|++.++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666666655
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.12 Score=31.11 Aligned_cols=29 Identities=7% Similarity=0.240 Sum_probs=17.1
Q ss_pred hHcCCCC-CHHHHHHHHHHHHhcCCchHHH
Q 046803 369 DVIGEKP-APAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 369 ~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
+++...| ++..|..|...+...|++++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4444555 3566666666666666666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.38 Score=29.39 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888744
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.27 Score=30.01 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
|..|...|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666777777777777777644
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.24 E-value=11 Score=34.15 Aligned_cols=91 Identities=7% Similarity=0.076 Sum_probs=45.3
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhHc----CCCCCHHHHHHHHH---HHHhcCCchHHHHHHHHHHhcCCCCcchH------
Q 046803 349 CMVDLFGRA-GLLNEAYKFVKDVI----GEKPAPAVWTAMLG---ACKMHKNFDLGVEVAEHLLSVEPENPGHY------ 414 (580)
Q Consensus 349 ~li~~~~~~-g~~~~A~~~~~~~~----~~~p~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~~------ 414 (580)
.+...|-.. .++++|+..|+++- +.+.+...-..++. --...+++.+|+.+|+++.....+|+..-
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344444433 56666666664443 11112222222222 23566889999999999876555443221
Q ss_pred HHHHH-HHHhcCChhHHHHHHHHHHh
Q 046803 415 VMLSN-IYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 415 ~~l~~-~y~~~g~~~~a~~~~~~m~~ 439 (580)
..-+. ++.-.++.-.+...+++-.+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 11122 22223555555555555544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.08 E-value=13 Score=34.47 Aligned_cols=211 Identities=16% Similarity=0.229 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC---CC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCcHH
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDF---GV--NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-----GLDVNVV 243 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 243 (580)
+...+|..+.+.|++++.++.|.+|..- .+ .-+..+.+++++-.+...+.+.-...++--++. +-...-.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3445566667777777777776666421 11 123345666666655555555444444332221 1111223
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccC--------CC-------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSE--------LN-------VIAWTAMISGYGMHGYGTEAVELFHRMRAHG-VRPN 307 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd 307 (580)
+-+-|...|...|++.+-.++++++.+ .| ...|..=|..|..+.+-.+...+|++...-. .-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 345677778888888887777776652 11 2456667788888888888888888776422 2333
Q ss_pred HHHHHHHHHHHH-----hcCCHHHHHHHHHHhHHhcCC--CCC---HHHHHHHHHHHHHcCC--HHHHHHHHHhHcCCC-
Q 046803 308 NVTFVAVLSACA-----HAGLVQEGHRVFASMRQEYGL--LPG---VEHHVCMVDLFGRAGL--LNEAYKFVKDVIGEK- 374 (580)
Q Consensus 308 ~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~---~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~- 374 (580)
.. ...++.-|. +.|.+++|..-|-++-+.+.- .|. .--|-.|..++.+.|- ++. +++-|.+
T Consensus 227 Pl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyKN 300 (440)
T KOG1464|consen 227 PL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYKN 300 (440)
T ss_pred hH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCCC
Confidence 33 334555453 567888876555444443322 222 2335566667666552 111 0222333
Q ss_pred -CCHHHHHHHHHHHHhc
Q 046803 375 -PAPAVWTAMLGACKMH 390 (580)
Q Consensus 375 -p~~~~~~~ll~~~~~~ 390 (580)
|.......|+.+|..+
T Consensus 301 dPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQNN 317 (440)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 4455677888888654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.06 E-value=1.1 Score=42.19 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..++..+...|+++.+...+++++..+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555555555555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.32 Score=29.08 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
..|..+...|...|++++|++.|++++.+.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.98 E-value=7.7 Score=31.75 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 238 (580)
..+.-+.....+|+-++-.+++..+.+. -.+++....-+..||.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445567777888888888888777653 367777888888888888888888888888887774
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.48 Score=41.98 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=48.3
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~ 395 (580)
|-..|.+.-|+--|.... .+.|+ +.+||-|.--+...|+++.|.+.|+..+...|. ..+...=.-++---|+++.
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 445555555655555443 44554 455555555566666666666666555555553 2222111222334456666
Q ss_pred HHHHHHHHHhcCCCCc
Q 046803 396 GVEVAEHLLSVEPENP 411 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~ 411 (580)
|.+-+-+.-+.+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 6666666666666654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.92 Score=43.09 Aligned_cols=95 Identities=18% Similarity=0.032 Sum_probs=69.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 358 (580)
.+-|.++|.+++|+..|..-+. +.| |.+++..-..+|.+...+..|+.-......- -..-+..|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999998776 566 8899999999999999998887766655421 0111344444444445567
Q ss_pred CHHHHHHHHHhHcCCCCCHH
Q 046803 359 LLNEAYKFVKDVIGEKPAPA 378 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~~p~~~ 378 (580)
.+.+|.+=++..+..+|+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH
Confidence 78888888877778888743
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.59 E-value=35 Score=38.65 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 046803 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355 (580)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 355 (580)
|.+....+.+.+.+++|.-.|+..-+ ..-.+.+|-..|+|.+|..+..++.. +-.--..+...|+.-+.
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHH
Confidence 33344444455666666666654322 11245667777788887777766532 11111333356777777
Q ss_pred HcCCHHHHHHHHHhHc
Q 046803 356 RAGLLNEAYKFVKDVI 371 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~ 371 (580)
..++.-+|-++..+..
T Consensus 1011 e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HcccchhHHHHHHHHh
Confidence 7777777777774444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.43 E-value=29 Score=37.51 Aligned_cols=164 Identities=9% Similarity=0.008 Sum_probs=79.5
Q ss_pred ChhhHHHHHHHHH-cCCCccHHHHHHHHHHHCCCCCChh----h-HHHHHHHHHccCChHHHHHHHHHHHHhCC----CC
Q 046803 70 DSFLFNTLIIRNS-KANFSTDSLLFYRRMIVSNISPSNY----T-FSAVIKSCAHLSILNLGRAVHCHVFVSGY----DS 139 (580)
Q Consensus 70 ~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~----t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~----~~ 139 (580)
+..++-.+...+. ...+++.|...+.+.....-+++-. . -..++..+.+.+... |.+..+..++.-- .+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3444555555554 5566777777777664432222221 1 112233344444333 7777766655321 12
Q ss_pred chHHHHHH-HHHHHhCCCHHHHHHHHccCCC-----CC--hhHHHHHHHHH--HhCCChhHHHHHHHHHHHCCC------
Q 046803 140 DLHVQAAL-VNFYAKSNNVDVARKVFDRMPD-----KS--VVAWNSMISGY--EQNGFAKEAIGLFNLMRDFGV------ 203 (580)
Q Consensus 140 ~~~~~~~l-i~~y~~~g~~~~A~~~f~~~~~-----~~--~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~------ 203 (580)
-...+.-+ +..+...++...|.+.++.+.. .| +...-.++.+. .+.+..+++++.++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 22333333 3333334677777777766542 12 22222333332 234556666666666633211
Q ss_pred ---CCChhHHHHHHHHHH--hCCChHHHHHHHHHHH
Q 046803 204 ---NPDSTTCVCVLAACA--QLGDIDLGRWVHEFIV 234 (580)
Q Consensus 204 ---~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~ 234 (580)
.|-..+|..+++.++ ..|++..+.+.++++.
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233445666666554 4456556666555544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.08 E-value=1.3 Score=41.65 Aligned_cols=61 Identities=8% Similarity=0.150 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
.++..++..+...|+++.+.+.+++.+...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4566788999999999999999988888888 789999999999999999999999999876
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=89.62 E-value=8.2 Score=31.70 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHh-cCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 374 KPAPAVWTAMLGACKMH---KNFDLGVEVAEHLLS-VEPEN-PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 374 ~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+...+--.+..+..+. .+..+++.+++.+.+ -.|.. ......|+-++.+.++++.+.++.+.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444445555443 356677788888876 33443 33445677788888888888888887766
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.55 E-value=8.7 Score=36.96 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 046803 290 TEAVELFHRMRAHGVRPNNV--TFVAVLSACAHAGL--VQEGHRVFASMRQEYGLLPGVEHHVCMV 351 (580)
Q Consensus 290 ~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li 351 (580)
+.+..+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+. ++++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 45666777777766655432 33333333322222 34677777777654 8887777776554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.40 E-value=7.3 Score=37.48 Aligned_cols=124 Identities=8% Similarity=0.084 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHh--C----CCHHHHHHHHccCCC-------CChhHHHHHHHHHHhCCC---
Q 046803 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAK--S----NNVDVARKVFDRMPD-------KSVVAWNSMISGYEQNGF--- 187 (580)
Q Consensus 124 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~----g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~--- 187 (580)
+...+++.+.+.|+..+..++-+..-.... . -....|..+|+.|.+ ++-.++.+|+.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 345566666666666555544432222222 1 123455666666654 233344444433 2222
Q ss_pred -hhHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhC-CC--hHHHHHHHHHHHHcCCCCcHHHhhHHh
Q 046803 188 -AKEAIGLFNLMRDFGVNPDST-TCVCVLAACAQL-GD--IDLGRWVHEFIVGQGLDVNVVLATSLI 249 (580)
Q Consensus 188 -~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~-~~--~~~a~~~~~~~~~~~~~~~~~~~~~li 249 (580)
.+.+...|+.+.+.|+..+.. -+.+-+-++... .. ..++..+++.+.+.|++.....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 245566777777766665433 233333233222 22 346667777777777776666665443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.33 E-value=8.4 Score=39.85 Aligned_cols=150 Identities=13% Similarity=-0.006 Sum_probs=102.7
Q ss_pred hcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046803 254 RCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 333 (580)
-.|+++.|..++-.++++ .-+.++.-+-.+|..++|+++ .||..-- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 346777777766666532 334455556667777777653 3333221 1223467899999887655
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 334 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
. .+..-|..|.++....|++..|.+.|.++.. |..|+-.+...|+.+.-..+.....+.+..|.
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 4 3456788999999999999999999965543 66788888888888877777777776665542
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 046803 414 YVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 414 ~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
-..+|...|+++++.+++.+-
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHhc
Confidence 335678899999999887653
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.55 Score=27.92 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
.+..+...|...|++++|++.|++.+...|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555677777777777777777776655553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.24 E-value=5 Score=34.51 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=8.9
Q ss_pred HHhhHhhhcCCHHHHHHHHHhc
Q 046803 247 SLINMYARCGNVSKAREIFDMM 268 (580)
Q Consensus 247 ~li~~y~~~g~~~~A~~~~~~~ 268 (580)
+|.-+-.|.|++.+|.+.|..+
T Consensus 172 ALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHH
Confidence 3333333444444444444433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.99 E-value=14 Score=31.63 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=46.7
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 396 (580)
-...++.+++..++..+. -+.|. ...-..-.-.+.+.|++.+|..++++.....|....-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345667777777777764 34453 22222233445577778888877755444444444445555555444333333
Q ss_pred HHHHHHHHhcCC
Q 046803 397 VEVAEHLLSVEP 408 (580)
Q Consensus 397 ~~~~~~~~~~~p 408 (580)
.....++++.++
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 333444554444
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.93 E-value=4.3 Score=31.41 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 290 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
-+..+-+..+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3566667777777889999999999999999999999999999998765533 336666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.69 E-value=5.5 Score=35.13 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=57.1
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCc
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPG---VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNF 393 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~ 393 (580)
+...|++++|..-|..+..-..-.+. ...|..-.-++.+.+.++.|++-..+++.+.|. .....-=..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34456666666666555532111111 233444445666777778887777777777764 22233334567777888
Q ss_pred hHHHHHHHHHHhcCCCC
Q 046803 394 DLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 394 ~~a~~~~~~~~~~~p~~ 410 (580)
++|+.-|+++++.+|..
T Consensus 185 eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHhCcch
Confidence 99999999999888874
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.47 E-value=5.5 Score=35.04 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHhCCChHHHHHHHHHHH
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS--TTCVCVLAACAQLGDIDLGRWVHEFIV 234 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~ 234 (580)
.+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...+++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444455555555555555555555443322222 133444444455555555554444433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.24 E-value=4.9 Score=30.76 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 288 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+..+.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44567777777777888999999999999999999999999999988754443 4446665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.14 E-value=3.5 Score=27.80 Aligned_cols=51 Identities=8% Similarity=0.141 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGY 489 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 489 (580)
....++.++.+.|++++|.+..+.+.+. .|...++.+.-..+.+.|.+.|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3567888999999999999999999873 46667777777777778887774
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.93 E-value=4.3 Score=35.24 Aligned_cols=78 Identities=13% Similarity=0.182 Sum_probs=46.2
Q ss_pred HHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC-----------CchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 046803 360 LNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK-----------NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427 (580)
Q Consensus 360 ~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 427 (580)
+++|+.-|++++.++|+ ..++..+..++..++ .+++|...|+++.+.+|+| ..|..-+.+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA------ 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH------
Confidence 34555555556667776 456666666665443 2567777788888899986 4555544444
Q ss_pred hHHHHHHHHHHhCCCcc
Q 046803 428 DRVEVVRNIMIQKGLKK 444 (580)
Q Consensus 428 ~~a~~~~~~m~~~~~~~ 444 (580)
+.|-++..++.+.+...
T Consensus 124 ~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 124 AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HTHHHHHHHHHHSSS--
T ss_pred HhhHHHHHHHHHHHhhh
Confidence 35777788777766543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.85 E-value=17 Score=31.42 Aligned_cols=132 Identities=16% Similarity=0.125 Sum_probs=74.8
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHH-HHHHHHHHHhC-CCHHHHHHHHccCCC
Q 046803 92 LFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHV-QAALVNFYAKS-NNVDVARKVFDRMPD 169 (580)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~-g~~~~A~~~f~~~~~ 169 (580)
+..+.+.+.++.|+...+..++..+.+.|.+..-.+ ++..++-+|... ...|++.-.+. .-.+-|..++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 445555667788888888888888888877654433 344554444433 33333221111 11334445555443
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 046803 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235 (580)
Q Consensus 170 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 235 (580)
..+..++..+...|++-+|+++.++.... +...-..++.+..+.++...=-.++....+
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24566777888888888888887765321 222334456666666666555555555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.47 E-value=10 Score=33.35 Aligned_cols=95 Identities=14% Similarity=0.063 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC------HHH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN--VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG------VEH 346 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~ 346 (580)
.+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...+++..+.....++........+ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4445555666666666666666666554434333 23445555566666666666655555432111111 223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
|..|. +...+++.+|-+.|-+..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 33332 234678888877775544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.98 E-value=2.8 Score=35.67 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=39.1
Q ss_pred HHcCCHHHHHHHHHhHc-CCCCCHHHH-HHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 355 GRAGLLNEAYKFVKDVI-GEKPAPAVW-TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 355 ~~~g~~~~A~~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
.+.++.+++..++ ..+ -.+|..... ..-...+...|++.+|+.+++.+.+..|..+..-..++.++...|+
T Consensus 21 l~~~~~~D~e~lL-~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALL-DALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHH-HHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3556777777777 443 344542221 1223345566777777777777666666655544455555544444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.94 E-value=23 Score=38.32 Aligned_cols=178 Identities=11% Similarity=0.069 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc--HHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhc
Q 046803 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN--VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH 286 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 286 (580)
+....++...+...++-|..+-+ ..+.+++ ........+-+.+.|++++|...|-+...--.. ...|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 34455566666666666655432 3333332 122333444556678888888777654421111 1245555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 046803 287 GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL-PGVEHHVCMVDLFGRAGLLNEAYK 365 (580)
Q Consensus 287 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~ 365 (580)
....+-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+.-. + |.. -|. ...+..+.+.+-+++|.-
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd~---e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFDV---ETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeeeH---HHHHHHHHHhChHHHHHH
Confidence 5666667777777777765 33444567788888888877766655432 1 211 122 234566666777777766
Q ss_pred HHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 366 FVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 366 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
+- ...+. +......+ +-..+++++|.+.++.+
T Consensus 485 LA-~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LA-TKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HH-HHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 66 32222 23333333 34457788877776543
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.77 E-value=13 Score=28.78 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 046803 122 LNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF 201 (580)
Q Consensus 122 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 201 (580)
.++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|... +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 44555555555443311 222322334557788999999999999988999999887654 667777777777777776
Q ss_pred CCCCChhHHHH
Q 046803 202 GVNPDSTTCVC 212 (580)
Q Consensus 202 g~~p~~~t~~~ 212 (580)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 455555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.71 E-value=5.4 Score=37.74 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=69.1
Q ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC-C--------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046803 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD-K--------SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNP 205 (580)
Q Consensus 135 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (580)
.|.+....+...++..-....+++++...+-++.. + ...+|--++. .-++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 34444555556666666666778888777665543 1 2233333332 335778888888888889999
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 046803 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237 (580)
Q Consensus 206 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 237 (580)
|.+++..+|+.+.+.+++..|.++...++...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999988888887777654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.22 E-value=21 Score=30.87 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=57.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHH-HHHHH--HHHHHHcC
Q 046803 283 YGMHGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVE-HHVCM--VDLFGRAG 358 (580)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 358 (580)
+++.+..++|+.-|.++.+.|...-.+ .-..........|+...|...|+++-.+ .-.|.+. -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 456677777777777777755442211 1112233455667777777777776543 2222211 11111 12234555
Q ss_pred CHHHHHHHHHhHcCC--CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 359 LLNEAYKFVKDVIGE--KPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
.+++...-. +.+.. .|- ...-..|.-+-.+.|++..|...|.++..
T Consensus 147 sy~dV~srv-epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRV-EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHh-hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666555555 33311 111 12223444444455555555555555443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.92 E-value=1.9 Score=37.36 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC----hhHHHHHHHHHH
Q 046803 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR----MDRVEVVRNIMI 438 (580)
Q Consensus 393 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~----~~~a~~~~~~m~ 438 (580)
+++|+.-|++++.++|+...++..++++|...+. ..+|...|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4677788888899999999999999999987654 445555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.83 E-value=15 Score=38.10 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 046803 154 SNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233 (580)
Q Consensus 154 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 233 (580)
.|+++.|..++..+++ ..-+.++..+-++|..++|+++ .+|+..-- ....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHhh
Confidence 4556666555555542 2334445555556666655543 22222111 1123445555555544332
Q ss_pred HHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 234 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
.+..-|..|.++..+.|++..|.+.|.... -|..|+-.+...|+.+....+-....+
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 233445555555555555555555555432 234444444444544433333333333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.71 E-value=9.7 Score=36.10 Aligned_cols=98 Identities=12% Similarity=0.227 Sum_probs=73.2
Q ss_pred cCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-C--------ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 046803 236 QGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-L--------NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306 (580)
Q Consensus 236 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 306 (580)
.|.+....+...++..-....+++++...+-++.. + ...+|-.++. .-++++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 35566666667777777777888888888777653 2 2233333332 346778999988888999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 307 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
|..++..++..+.+.++..+|.++...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777643
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.68 E-value=0.57 Score=44.59 Aligned_cols=89 Identities=10% Similarity=0.178 Sum_probs=63.0
Q ss_pred HcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 046803 356 RAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVR 434 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 434 (580)
..|.+++|++.|..+++..|. ...|.-=.+++.+.+....|++-+..+++++|+...-|-.-..+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 356677777777677766664 4445555566777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCcc
Q 046803 435 NIMIQKGLKK 444 (580)
Q Consensus 435 ~~m~~~~~~~ 444 (580)
....+.+...
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 7777766554
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.64 E-value=1.9 Score=43.10 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=69.7
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCCCHHHHH-HHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKPAPAVWT-AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 430 (580)
+-+...+.++.|..++.+++..+|+-..|- .=..++.+.+++..|+.-+.++++.+|.....|+.-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 344567788888888888888888754433 3337788888999999999999999988888888888888888888888
Q ss_pred HHHHHHHHh
Q 046803 431 EVVRNIMIQ 439 (580)
Q Consensus 431 ~~~~~~m~~ 439 (580)
...|+.-..
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 888876544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.23 E-value=1.2 Score=24.72 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=18.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHH
Q 046803 412 GHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 412 ~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.03 E-value=5.5 Score=33.37 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=28.5
Q ss_pred cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 390 HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 390 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++.+++..++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555555555555555555555555555555555555555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.90 E-value=27 Score=30.88 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHHcCCHHHH
Q 046803 291 EAVELFHRMRAHGVRPNNVTFV--AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHH-----VCMVDLFGRAGLLNEA 363 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A 363 (580)
+......++....-.....++. .+...+...+++++|...++..... |....+ -.|.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555555432221222222 2334566778888888877766521 222222 2345667778888888
Q ss_pred HHHHHhHc-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 364 YKFVKDVI-GEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 364 ~~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
+..+ +.. +..-.......-...+...|+-++|...|++.++.+++
T Consensus 146 L~~L-~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTL-DTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHH-hccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 8888 332 21112222333445677788888888888888877643
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.43 E-value=1.6 Score=25.54 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=10.0
Q ss_pred HHHhcCCchHHHHHHHHHHhcCC
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
++.+.|++++|...++++++..|
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHHHHCc
Confidence 33344444444444444444443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.36 E-value=1 Score=26.72 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCC
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 375 (580)
.|..+...|...|++++|.+.|++.+...|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566677777777777777766654444
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.22 E-value=1.9 Score=26.92 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=22.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 412 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888999999999999999888764
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.86 E-value=0.7 Score=39.03 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=54.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHH
Q 046803 112 VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEA 191 (580)
Q Consensus 112 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 191 (580)
++..+.+.+.++....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777766566677888888888888777777777774332 2334455556666666666
Q ss_pred HHHHHHH
Q 046803 192 IGLFNLM 198 (580)
Q Consensus 192 ~~~~~~m 198 (580)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6665554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.72 E-value=7.6 Score=35.43 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=67.2
Q ss_pred HHHHHcCCHHHHHHHHHhHc--------CCCCCHHHHH-----------HHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 352 DLFGRAGLLNEAYKFVKDVI--------GEKPAPAVWT-----------AMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~--------~~~p~~~~~~-----------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
+-+.+.|++.+|..-|++++ ..+|...-|. ..-..+...|++-++++...+++...|.|..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 44556777777777776654 4455433332 2334456778999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+|..-+.+.+..=+.++|..-|....+.
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 9999999999888889999988888764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.38 E-value=75 Score=34.74 Aligned_cols=165 Identities=12% Similarity=0.028 Sum_probs=93.9
Q ss_pred ccCChhHHHHHHccCCCCChhhHHHHH----HHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHH
Q 046803 52 DAGFITYAQRIFFCIPSPDSFLFNTLI----IRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRA 127 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 127 (580)
+..-++.|..+-..-.. |...-..+. +-+.+.|++++|...|-+-... +.|. .++.-+.....+..-..
T Consensus 346 kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~ 418 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTS 418 (933)
T ss_pred HhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHH
Confidence 44455666666544322 222223333 2345678999998888776543 3332 24555555566666667
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChh-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 046803 128 VHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVV-AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206 (580)
Q Consensus 128 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 206 (580)
+++.+.+.|+.. ...-+.|+++|.|.++.+.-.+..+........ -....+..+.+.+..++|..+-.+... .
T Consensus 419 YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----h 492 (933)
T KOG2114|consen 419 YLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-----H 492 (933)
T ss_pred HHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----C
Confidence 777888888653 344467889999999988888887776621111 133445555566666666554433221 2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHH
Q 046803 207 STTCVCVLAACAQLGDIDLGRWVHEF 232 (580)
Q Consensus 207 ~~t~~~ll~a~~~~~~~~~a~~~~~~ 232 (580)
......++ -..+++++|.+++..
T Consensus 493 e~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 493 EWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHH---HHhcCHHHHHHHHhc
Confidence 22222222 345666666666544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.17 E-value=30 Score=29.97 Aligned_cols=131 Identities=12% Similarity=0.073 Sum_probs=71.2
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH-HHhhHHhhHhhhc-CCHHHHHHHHHhcc
Q 046803 192 IGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNV-VLATSLINMYARC-GNVSKAREIFDMMS 269 (580)
Q Consensus 192 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~y~~~-g~~~~A~~~~~~~~ 269 (580)
++.++.+.+.|++|+...+..+++.+.+.|.+..-.+ +++.++-+|. .+.-.|++.-.+. .-.+-|.+.+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh-
Confidence 3455666667788888888888888888887654433 3344433333 3333332221110 0122333333333
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 270 ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
...+..++..+...|++-+|+++.++.... +......++.+..+.++...-..+|+-.
T Consensus 89 ---~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 89 ---GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234556677778888888888887765322 1222244566666666655544444444
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.15 E-value=3.2 Score=42.57 Aligned_cols=99 Identities=18% Similarity=0.134 Sum_probs=63.0
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
.|+...|...+..+. ...|. ......|...+.+.|...+|-.++.+.+.+.- .+.++..+..++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 466666666666554 33332 12233455666666777777777766665443 3566777777777777888888
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 398 EVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
+.+++++++.|+++..-..|..+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 8888888887777776665554433
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.06 E-value=1.9 Score=24.31 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=11.7
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCC
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
.+...+...++++.|...+++.++..|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 333444444444444444444444333
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.99 E-value=7.8 Score=38.85 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=80.7
Q ss_pred hcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046803 285 MHGYGTEAV-ELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 285 ~~g~~~~A~-~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 363 (580)
..|+...|- +++..+....-.|+.+...+.| ..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 456655554 4455555554556666555544 4678888888888777643 3344566777888888888999999
Q ss_pred HHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 364 YKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 364 ~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
..+-.-+++.+. ++.+...-.......|-++++...+++++.++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 988844444332 4555554455556778888888888888888765
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.83 E-value=43 Score=31.64 Aligned_cols=60 Identities=10% Similarity=-0.016 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
++.....|...|.+.+|.++.++++.++|-+...+..|...|+..|+--+|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 445556889999999999999999999999999999999999999998888887777754
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.64 E-value=46 Score=31.80 Aligned_cols=82 Identities=11% Similarity=-0.021 Sum_probs=36.3
Q ss_pred CCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCh----HHHHHHHHHHHHhCCCCchH
Q 046803 67 PSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL----NLGRAVHCHVFVSGYDSDLH 142 (580)
Q Consensus 67 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~----~~a~~~~~~~~~~g~~~~~~ 142 (580)
..+|.......+..+...|. .+++..+..+... +|...=...+.+++..|+. +++...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 34555555555555555553 3444444444332 2333333444455555542 2333333333222 34445
Q ss_pred HHHHHHHHHHhC
Q 046803 143 VQAALVNFYAKS 154 (580)
Q Consensus 143 ~~~~li~~y~~~ 154 (580)
+-...+.+++..
T Consensus 107 VR~~A~~aLG~~ 118 (280)
T PRK09687 107 VRASAINATGHR 118 (280)
T ss_pred HHHHHHHHHhcc
Confidence 554444444443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.58 E-value=5.4 Score=35.68 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHH
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLG 385 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~ 385 (580)
|....++.+.+.+.+.+|+...+.-++. .+.+...-..+++.|+-.|++++|..-++-.-.+.|+ ...|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455667778889999999988776653 2234555566899999999999999888444455553 455666665
Q ss_pred H
Q 046803 386 A 386 (580)
Q Consensus 386 ~ 386 (580)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.49 E-value=62 Score=33.20 Aligned_cols=175 Identities=11% Similarity=0.122 Sum_probs=113.1
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
+.|....-++++.++....++-.+.+..+|.+ .+-..+..++..|.++ ..++-..+|+++.+.. -|...+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 44556667788888888888888888887774 5667788888888888 5677888888888743 34444554444
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhH---cCCCCCHHHHHHHHHHH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPG------VEHHVCMVDLFGRAGLLNEAYKFVKDV---IGEKPAPAVWTAMLGAC 387 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~p~~~~~~~ll~~~ 387 (580)
-+...++.+.+..+|.++.. .+.|. .+.|.-|+..- ..+.+.-+.+..+. .+...-...+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44555888888888888764 33442 33455554422 23455555544222 13333344555566677
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
....++++|++++..+++.+..|..+-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 788889999999988888776665554444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.46 E-value=78 Score=34.28 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=36.3
Q ss_pred HhcCCchHHHHHHHHHHhcC---CC------CcchHHHHHHHHHhcCChhHHHHHHH
Q 046803 388 KMHKNFDLGVEVAEHLLSVE---PE------NPGHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~---p~------~~~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
...+++..|....+.+.+.. |. .+..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 46788999999999887643 22 24455566667778899999999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.38 E-value=63 Score=33.17 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhh
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA 253 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 253 (580)
..-+++..+.++..+.-...+..+|...| .+...|..++..|... ..++-..+++++++..+ .|++...-|+..|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHH
Confidence 44556666666666666777777776643 4566677777777666 44556666666666653 24444455555555
Q ss_pred hcCCHHHHHHHHHhccCC------C---hHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCC
Q 046803 254 RCGNVSKAREIFDMMSEL------N---VIAWTAMISGYGMHGYGTEAVELFHRMRA-HGVRPNNVTFVAVLSACAHAGL 323 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~~------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~a~~~~g~ 323 (580)
+ ++.+.+...|.++..+ + -..|.-++..- ..+.+..+.+..+... .|..--.+.+--+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 5 6666666666655421 1 12455444321 2344555555555543 3333333444445556666777
Q ss_pred HHHHHHHHHHhHH
Q 046803 324 VQEGHRVFASMRQ 336 (580)
Q Consensus 324 ~~~a~~~~~~~~~ 336 (580)
+.+|.+++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776553
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.30 E-value=1.8 Score=36.48 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=16.5
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHH
Q 046803 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225 (580)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 225 (580)
.+.+.++....+++.+...+...+....+.++..|++.+..+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~ 60 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEK 60 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCH
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchH
Confidence 3334444444444444433323333344444444444433333
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.25 E-value=79 Score=34.21 Aligned_cols=71 Identities=11% Similarity=0.004 Sum_probs=43.2
Q ss_pred ChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCh-------HHHHHHHHHHHHhCCCCchH
Q 046803 70 DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL-------NLGRAVHCHVFVSGYDSDLH 142 (580)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-------~~a~~~~~~~~~~g~~~~~~ 142 (580)
+...|- +|-.+.|.|++++|.++..+.... .......|...+.++....+- +....-|++.++.....|++
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 334564 677889999999999999666543 455566788888888765332 23444555555444333543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.85 E-value=2.9 Score=28.18 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
.+.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45667888899999999999999999987543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.74 E-value=6.6 Score=37.09 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.+.|-.+|.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 5677778899999999999999999999999988888999999999999999988887664
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.56 E-value=11 Score=33.41 Aligned_cols=74 Identities=14% Similarity=0.030 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCcHHHhhHHhhHhhhcCCHHHHH
Q 046803 188 AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ---GLDVNVVLATSLINMYARCGNVSKAR 262 (580)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~y~~~g~~~~A~ 262 (580)
-++|.+.|-++...+..-++.....+...| ...+.+++.+++....+. +-.+|+.++.+|++.|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345666666666655443443333333333 355666666666666543 22456666666777776666666653
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.45 E-value=6 Score=35.94 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHhHcCCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 358 GLLNEAYKFVKDVIGEKPAPAV-WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 358 g~~~~A~~~~~~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
.+++.|...|-+++-+.|.+.+ |..=+-.+.+.++++.+..--++++++.|+.......|+........+++|...+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3455555555556656665433 444444555566666666666666666666666666666666666666666666666
Q ss_pred HH
Q 046803 437 MI 438 (580)
Q Consensus 437 m~ 438 (580)
..
T Consensus 104 a~ 105 (284)
T KOG4642|consen 104 AY 105 (284)
T ss_pred HH
Confidence 53
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.25 E-value=3.9 Score=25.39 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMR 300 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 300 (580)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355566666666666666666666554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.08 E-value=2.6 Score=24.56 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667899999999999999999998764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.1 bits (162), Expect = 9e-12
Identities = 23/191 (12%), Positives = 50/191 (26%), Gaps = 7/191 (3%)
Query: 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN 257
R +P +L +D+ + L +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 258 VSKAREIFDMMSE-------LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310
+ A + + L + + A++ G+ G E V + ++ G+ P+ ++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDV 370
+ A L + GL ++ RA +L +K
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 371 IGEKPAPAVWT 381
P
Sbjct: 263 SLPPQLPPPVN 273
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 3e-09
Identities = 22/175 (12%), Positives = 61/175 (34%), Gaps = 8/175 (4%)
Query: 103 SPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARK 162
SP + +++ L++ +A + A ++ + +A
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 163 VFDRMPDK-------SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLA 215
+ + ++ +N+++ G+ + G KE + + +++D G+ PD + L
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 216 ACAQLGDIDLGRW-VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269
+ E + +GL + + L++ R + ++ S
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 3e-05
Identities = 43/367 (11%), Positives = 117/367 (31%), Gaps = 66/367 (17%)
Query: 257 NVSKAREIFDM---MSELNVIAWTAMISGYGMHGYG--TEAVELFHRMRAHGVRPNNVTF 311
NVS+ + + + EL + G+ G G A+++ + + +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLI---DGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371
+ + + + +++ ++ + + H + L ++ ++ ++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRS---DHSSNIKL-----RIHSIQAELRRLL 238
Query: 372 GEKPAPA-------VWT-----AMLGACKM------HKNFD-LGVEVAEHLLSVEPENPG 412
KP V A +CK+ + D L H +S++ +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH-ISLDHHSMT 297
Query: 413 HYV-----MLSNIYALAGRMDRVEVVRNI-----MIQKGLKKHVG----YSTVEVDQKNY 458
+L + EV+ +I + ++ + + V D+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 459 LFSMG-DKSHPNTNEIYQYLDELMGRCREAGYVPESESAM--HELEEEEREYSLRYHSEK 515
+ + P E + D L + ++P ++ ++ + + + K
Sbjct: 358 IIESSLNVLEP--AEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-KLHK 413
Query: 516 LALAFGLMRTSPGMTIRIVKNLRMCVDCHSAIKFISVATNREIIVRDRL-RFHHFKRGSC 574
+L + + TI I ++ + + ++ A +R I+ + +
Sbjct: 414 YSL---VEKQPKESTISI-PSIYLELKVKLENEY---ALHRSIVDHYNIPKTFDSDDLIP 466
Query: 575 SCLD-YW 580
LD Y+
Sbjct: 467 PYLDQYF 473
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 6e-04
Identities = 20/151 (13%), Positives = 48/151 (31%), Gaps = 22/151 (14%)
Query: 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM----PDKSVVAWNSMISG 181
RA+ ++ + A ++ + +++R+ + + +
Sbjct: 89 RAISTL-----LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF 143
Query: 182 YEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQL-----GDIDLGRWVHEFIVGQ 236
+ K +F R+ D+ T V A + D + + E + +
Sbjct: 144 ARRAEGIKSGRMIFKKARE-----DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 198
Query: 237 -GLDVNVVLATSLINMYARCGNVSKAREIFD 266
G VLA I+ + + R +F+
Sbjct: 199 YGDIPEYVLA--YIDYLSHLNEDNNTRVLFE 227
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 580 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.24 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.21 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.13 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.11 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.1 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.09 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.07 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.01 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.99 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.98 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.97 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.92 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.9 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.89 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.88 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.87 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.85 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.84 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.84 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.81 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.8 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.8 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.8 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.79 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.77 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.77 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.76 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.75 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.71 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.7 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.68 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.65 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.64 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.64 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.63 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.61 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.61 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.6 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.59 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.57 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.57 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.56 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.54 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.53 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.52 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.52 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.52 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.51 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.48 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.45 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.45 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.45 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.44 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.39 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.38 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.36 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.35 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.35 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.33 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.33 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.31 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.28 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.26 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.24 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.21 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.2 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.2 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.19 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.19 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.18 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.17 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.17 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.16 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.12 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.11 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.1 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.96 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.88 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.8 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.71 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.69 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.65 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.64 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.64 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.5 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.49 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.46 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.46 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.43 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.39 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.38 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.36 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.34 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.04 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.0 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.87 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.66 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.65 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.56 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.52 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.26 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.22 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.93 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.82 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.67 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.4 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.01 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.67 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.4 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.35 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.27 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.2 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.08 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.0 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.79 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.76 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.02 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.42 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.37 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.28 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.15 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.13 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.49 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.46 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.09 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.73 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.08 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.85 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.14 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.81 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.37 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.96 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.9 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.79 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.61 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.99 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.32 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.47 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.29 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.13 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-39 Score=342.75 Aligned_cols=427 Identities=10% Similarity=0.000 Sum_probs=377.0
Q ss_pred CCHHHHHHHHhcC---CCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccC--CCCChhhHHHHHHH
Q 046803 6 PHSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCI--PSPDSFLFNTLIIR 80 (580)
Q Consensus 6 p~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~--~~~~~~~~~~li~~ 80 (580)
|+...|..++..+ ++.+.+..++..+++ ..|+...++.+...+...|++++|.++|+.+ ..++..+|+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 5667778888766 566888889988885 4567788899999999999999999999998 46899999999999
Q ss_pred HHcCCCccHHHHHHHHHHHC---------------CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHH-
Q 046803 81 NSKANFSTDSLLFYRRMIVS---------------NISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQ- 144 (580)
Q Consensus 81 ~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~- 144 (580)
|.+.|++++|+++|+++... |..++..+|..++.++.+.|++++|.+.|+++++.+.. +...+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 99999999999999953221 22345789999999999999999999999999987632 33332
Q ss_pred -------------------------------------HHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhC
Q 046803 145 -------------------------------------AALVNFYAKSNNVDVARKVFDRMPD--KSVVAWNSMISGYEQN 185 (580)
Q Consensus 145 -------------------------------------~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~ 185 (580)
+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 3335667788999999999999988 7999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHH
Q 046803 186 GFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIF 265 (580)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 265 (580)
|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..++..+.+.. +.+..+++.++.+|.++|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999765 4477899999999999999999999999999765 678999999999999999999999999
Q ss_pred HhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC
Q 046803 266 DMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP 342 (580)
Q Consensus 266 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 342 (580)
+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.++|+++.+. .+.
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 473 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQY 473 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 98863 568899999999999999999999999999853 347789999999999999999999999999864 234
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcC------CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIG------EKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
+..+|+.++.+|.+.|++++|.++|++++. ..|+ ..+|..++.+|.+.|++++|+..++++++.+|+++.+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 688999999999999999999999977763 3777 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 415 VMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 415 ~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..++.+|.+.|++++|.+.++++.+.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=321.51 Aligned_cols=411 Identities=8% Similarity=-0.057 Sum_probs=358.9
Q ss_pred CCCCHHHHHHHHhcC---CCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCC-CC----------
Q 046803 4 KQPHSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP-SP---------- 69 (580)
Q Consensus 4 ~~p~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~-~~---------- 69 (580)
..||..++..+..+| ++.+.+..++..+.. ..+++.+++.++..|.+.|++++|.++|+++. ..
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 457888887777665 566788888877653 36789999999999999999999999999544 33
Q ss_pred --------ChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHH------------------------------
Q 046803 70 --------DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSA------------------------------ 111 (580)
Q Consensus 70 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~------------------------------ 111 (580)
++.+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 4889999999999999999999999999885422 2222222
Q ss_pred --------HHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHH
Q 046803 112 --------VIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMIS 180 (580)
Q Consensus 112 --------ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 180 (580)
++..+.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLA 347 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 244556788999999999998776 58899999999999999999999999998853 47789999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHH
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 260 (580)
+|.+.|++++|.++|+++.+.. +.+..++..++.+|.+.|++++|.++|..+.+.. +.+..+++.++.+|.+.|++++
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998653 5578899999999999999999999999999875 5678899999999999999999
Q ss_pred HHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 261 AREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 261 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999998864 478899999999999999999999999999853 336789999999999999999999999999764
Q ss_pred c---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 338 Y---GLLPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 338 ~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
. +..|+ ..+|..++.+|.+.|++++|.+.+++++...| +..+|..+..+|...|++++|.+.++++++++|+++
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 2 56787 78999999999999999999999988887777 689999999999999999999999999999999999
Q ss_pred chHHHHHHHHH
Q 046803 412 GHYVMLSNIYA 422 (580)
Q Consensus 412 ~~~~~l~~~y~ 422 (580)
..+..|+++|.
T Consensus 585 ~~~~~l~~~~~ 595 (597)
T 2xpi_A 585 MASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-27 Score=240.39 Aligned_cols=370 Identities=11% Similarity=0.039 Sum_probs=305.3
Q ss_pred HHhccCChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHH
Q 046803 49 LVCDAGFITYAQRIFFCIP---SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 49 ~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 125 (580)
.+.+.|++++|.+.|+.+. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+...|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 3447889999998887654 2355677777788888999999999998887653 34667888888889999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046803 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202 (580)
Q Consensus 126 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 202 (580)
...++++++.. +.+...+..+..+|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.+..
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999998875 44566788899999999999999999887754 3 45677888888888999999999999988752
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHH
Q 046803 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAM 279 (580)
Q Consensus 203 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 279 (580)
+.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..+ .+..+|..+
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 243 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHH
Confidence 3346788888888999999999999999998876 55677888889999999999999999887653 357788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 358 (580)
...|...|++++|+..|+++.+. .| +..++..+..++.+.|++++|...|+++.+. .+.+...+..++..+.+.|
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcC
Confidence 99999999999999999998884 34 4567888888999999999999999998763 3456788888999999999
Q ss_pred CHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 359 LLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
++++|.+.+++++...|+ ..++..+...+.+.|++++|+..++++++..|+++..|..++.+|...|+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999888888775 77888999999999999999999999999999999999999888877663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-27 Score=237.52 Aligned_cols=353 Identities=12% Similarity=0.073 Sum_probs=311.5
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Q 046803 77 LIIRNSKANFSTDSLLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSN 155 (580)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 155 (580)
+...+.+.|++++|++.++++.+. .|+. ..+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677889999999999998875 4544 455566667788999999999999998875 567889999999999999
Q ss_pred CHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhCCChHHHHHHHH
Q 046803 156 NVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS-TTCVCVLAACAQLGDIDLGRWVHE 231 (580)
Q Consensus 156 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~ 231 (580)
++++|...|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|.+.+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998753 3 5668999999999999999999999999885 4554 467778888899999999999999
Q ss_pred HHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-C
Q 046803 232 FIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-N 307 (580)
Q Consensus 232 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d 307 (580)
.+.+.. +.+..+++.+..+|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .| +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC
Confidence 999875 56788999999999999999999999999874 45678999999999999999999999999874 45 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHH
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLG 385 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~ 385 (580)
..++..+..++...|++++|...|+++.+. .| +...|..++..|.+.|++++|.+.|++++...| +..+|..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 678889999999999999999999999852 34 578899999999999999999999988887777 5889999999
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=253.48 Aligned_cols=183 Identities=14% Similarity=0.135 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC---------hHHHHHHHHHHHHcCCCCcHH
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD---------IDLGRWVHEFIVGQGLDVNVV 243 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 243 (580)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34667777777777777777777777777777777777777777766543 466777777777777777777
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA 319 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 319 (580)
+||+||++|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 777777777777777777777777763 6777777777777777777777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR 356 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 356 (580)
+.|++++|.++|++|.+ .+..|+..+|+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 77777777777777764 3777777777777777654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=252.09 Aligned_cols=211 Identities=13% Similarity=0.039 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccC
Q 046803 89 DSLLFYRRMIVSNISPSN-YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM 167 (580)
Q Consensus 89 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 167 (580)
.+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 455666777777665544 357888889999999999999999999999999999999998888877754322
Q ss_pred CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhH
Q 046803 168 PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATS 247 (580)
Q Consensus 168 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 247 (580)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+||+
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23455788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhhhcCCHHHHHHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046803 248 LINMYARCGNVSKAREIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 321 (580)
||.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..+...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999974 899999999999999999999999999999999999999999999988764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-23 Score=212.49 Aligned_cols=308 Identities=10% Similarity=-0.011 Sum_probs=206.7
Q ss_pred CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 046803 69 PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148 (580)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 148 (580)
.++..|..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...+..+++.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 356678888889999999999999999888752 3367778888888888999999999999988876 44577888888
Q ss_pred HHHHhCCCHHHHHHHHccCCCC---Ch---hHHHHHHHH------------HHhCCChhHHHHHHHHHHHCCCCCChhHH
Q 046803 149 NFYAKSNNVDVARKVFDRMPDK---SV---VAWNSMISG------------YEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210 (580)
Q Consensus 149 ~~y~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 210 (580)
.+|.+.|++++|.+.|+++.+. +. ..|..++.. +.+.|++++|+..|+++.+.. +.+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 8888888888888888887652 23 556555443 677777777777777776642 3355566
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-ChHHHHHH--------
Q 046803 211 VCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-NVIAWTAM-------- 279 (580)
Q Consensus 211 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------- 279 (580)
..+..++...|++++|..++..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ | +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 677777777777777777777776654 45566677777777777777777777766643 2 23333333
Q ss_pred ----HHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 046803 280 ----ISGYGMHGYGTEAVELFHRMRAHGVRPN-----NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350 (580)
Q Consensus 280 ----i~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 350 (580)
...+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...++.+.+. .+.+...|..+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 335 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 55566666666666666666652 333 234555556666666666666666665532 12245566666
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAML 384 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll 384 (580)
..+|...|++++|.+.+++++...|+ ..++..+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 66666666666666666666666553 44444444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=215.45 Aligned_cols=340 Identities=11% Similarity=0.022 Sum_probs=279.0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC
Q 046803 90 SLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD 169 (580)
Q Consensus 90 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 169 (580)
+...|.+..... +.+...+..+...+...|++++|..+++.+++.. +.+...+..+..+|.+.|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444331 2355678888889999999999999999999875 55788999999999999999999999998764
Q ss_pred ---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh----hHHHHH------------HHHHHhCCChHHHHHHH
Q 046803 170 ---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS----TTCVCV------------LAACAQLGDIDLGRWVH 230 (580)
Q Consensus 170 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~a~~~~~~~~~a~~~~ 230 (580)
.+..+|..+...|.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|++++|...+
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 36789999999999999999999999999875 4543 454444 44488899999999999
Q ss_pred HHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 046803 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307 (580)
Q Consensus 231 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 307 (580)
..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.+. .|+
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 243 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQD 243 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 9999875 66888999999999999999999999998864 57889999999999999999999999999874 555
Q ss_pred HHH-HHHH------------HHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhHcC
Q 046803 308 NVT-FVAV------------LSACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 308 ~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 372 (580)
... +..+ ..+|.+.|++++|...|+.+.+...-.|. ..++..++.++.+.|++++|++.+++++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 443 3333 78899999999999999999864222111 45788999999999999999999988887
Q ss_pred CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH------------HHHHhcC-----ChhHHHHHH
Q 046803 373 EKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS------------NIYALAG-----RMDRVEVVR 434 (580)
Q Consensus 373 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~y~~~g-----~~~~a~~~~ 434 (580)
..| +..+|..+..+|...|++++|...+++++++.|+++..+..++ +.|...| +.+++.+.+
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y 403 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY 403 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHH
Confidence 777 5899999999999999999999999999999999999999998 4455555 556667777
Q ss_pred HH
Q 046803 435 NI 436 (580)
Q Consensus 435 ~~ 436 (580)
++
T Consensus 404 ~~ 405 (450)
T 2y4t_A 404 RK 405 (450)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-24 Score=222.47 Aligned_cols=388 Identities=8% Similarity=-0.065 Sum_probs=306.4
Q ss_pred HHHHHhccCChhHHHHHHccCCC--CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChH
Q 046803 46 LLSLVCDAGFITYAQRIFFCIPS--PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILN 123 (580)
Q Consensus 46 ll~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 123 (580)
+-..+...|++++|.+.|+++.. ||..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..++...|+++
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 33455588899999999887753 788888888899999999999999999888754 225567888888888889999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH--------------------------------------c
Q 046803 124 LGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVF--------------------------------------D 165 (580)
Q Consensus 124 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f--------------------------------------~ 165 (580)
+|...+..+.+.+. ++......++..+.+......+.+.+ .
T Consensus 91 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 91 DAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 99999998888763 33333333333333322222221111 1
Q ss_pred cCCC---------C-ChhHHHHHHHHHHh---CCChhHHHHHHHHHHH-----CCCCC--------ChhHHHHHHHHHHh
Q 046803 166 RMPD---------K-SVVAWNSMISGYEQ---NGFAKEAIGLFNLMRD-----FGVNP--------DSTTCVCVLAACAQ 219 (580)
Q Consensus 166 ~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll~a~~~ 219 (580)
.... + +...|......+.. .|++++|+..|+++.+ ....| +..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 1100 1 13445555555554 8999999999999987 31122 34577888889999
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHH
Q 046803 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELF 296 (580)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 296 (580)
.|++++|...+..+.+.... ..++..+..+|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999988633 88899999999999999999999998765 46778999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 297 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
++..+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++++...|+
T Consensus 328 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 328 DKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 99998532 256788889999999999999999999998642 235678888999999999999999999887744442
Q ss_pred -------HHHHHHHHHHHHh---cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 377 -------PAVWTAMLGACKM---HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 377 -------~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..+|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3489999999999 999999999999999999999999999999999999999999999999874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-23 Score=217.82 Aligned_cols=394 Identities=8% Similarity=-0.038 Sum_probs=314.6
Q ss_pred cCCCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCccHHHHH
Q 046803 17 AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP---SPDSFLFNTLIIRNSKANFSTDSLLF 93 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 93 (580)
..++.+.+...+..+++.. |++..+..+...+...|++++|.+.|+.+. +.+..+|..+...|.+.|++++|+..
T Consensus 18 ~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4467788999999998876 688899999999999999999999999764 35677999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH-----------------------------------HhCC-
Q 046803 94 YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVF-----------------------------------VSGY- 137 (580)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-----------------------------------~~g~- 137 (580)
|+++...+. ++......++..+........+.+.+..+. ....
T Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 96 LSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 999988753 344444444443333222222221111100 0000
Q ss_pred --------CCchHHHHHHHHHHHh---CCCHHHHHHHHccCCC----------------C-ChhHHHHHHHHHHhCCChh
Q 046803 138 --------DSDLHVQAALVNFYAK---SNNVDVARKVFDRMPD----------------K-SVVAWNSMISGYEQNGFAK 189 (580)
Q Consensus 138 --------~~~~~~~~~li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~ 189 (580)
+.+...+..+...+.. .|++++|...|+++.+ + +..+|..+...+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 1124444444454554 8999999999987654 1 3468889999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 190 EAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 190 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
+|+..|+++.+.. |+...+..+..++...|++++|...+..+.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 255 ~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 255 GAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998864 447788999999999999999999999999875 5678889999999999999999999999876
Q ss_pred C---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---
Q 046803 270 E---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--- 343 (580)
Q Consensus 270 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--- 343 (580)
+ .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...-.++
T Consensus 332 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 410 (514)
T 2gw1_A 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV 410 (514)
T ss_dssp HTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS
T ss_pred HhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH
Confidence 3 457789999999999999999999999998752 235678888999999999999999999998764333333
Q ss_pred -HHHHHHHHHHHHH---cCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 344 -VEHHVCMVDLFGR---AGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 344 -~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
...+..+...+.+ .|++++|.+.+++.+...| +..+|..+...+...|++++|...+++++++.|.++..+..+
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4488889999999 9999999999988887777 488899999999999999999999999999999987776655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-21 Score=200.18 Aligned_cols=387 Identities=9% Similarity=0.013 Sum_probs=284.8
Q ss_pred hhchHHHHHhccCChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 046803 42 MLTKLLSLVCDAGFITYAQRIFFCIP---SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118 (580)
Q Consensus 42 ~~~~ll~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 118 (580)
.+..+-..+.+.|++++|.+.|+.+. +.++.+|..+...|.+.|++++|++.|+++...+ +.+..++..+...+..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 34444455667778888888887654 2466778888888888888888888888877653 2255667777777778
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC-----------------------------
Q 046803 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD----------------------------- 169 (580)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----------------------------- 169 (580)
.|++++|...++ .+.. .|+. .+..+..+...+....|...++.+..
T Consensus 106 ~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 888888888775 3322 1211 11112222333333444444443322
Q ss_pred --------CChh---HHHHHHHHHHh--------CCChhHHHHHHHHHHHCCCCCC--------hhHHHHHHHHHHhCCC
Q 046803 170 --------KSVV---AWNSMISGYEQ--------NGFAKEAIGLFNLMRDFGVNPD--------STTCVCVLAACAQLGD 222 (580)
Q Consensus 170 --------~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~a~~~~~~ 222 (580)
.+.. .+..+...+.. .|++++|+.+|+++.+. .|+ ..++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 1111 22233322222 24789999999999875 344 2346667778889999
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046803 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRM 299 (580)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (580)
+++|...+..+.+.. |+...+..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|++.
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999875 4488899999999999999999999998764 46788999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC----
Q 046803 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP---- 375 (580)
Q Consensus 300 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---- 375 (580)
.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.+++++...|
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 9853 224578888999999999999999999999864 233577888899999999999999999987763322
Q ss_pred ---CHHHHHHHHHHHHhc----------CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 376 ---APAVWTAMLGACKMH----------KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 376 ---~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
....+..+...+... |++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 123345556777777 999999999999999999999999999999999999999999999998743
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-19 Score=179.91 Aligned_cols=306 Identities=10% Similarity=-0.012 Sum_probs=191.6
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHH
Q 046803 106 NYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGY 182 (580)
Q Consensus 106 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 182 (580)
...+..+...+...|++++|...+..+++.. +.+...+..+...|...|++++|...|++..+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3445556666666777777777777776654 33455666666666666777777666665542 2445666666666
Q ss_pred HhCCChhHHHHHHHHHHHCCCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCH
Q 046803 183 EQNGFAKEAIGLFNLMRDFGVNP----DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258 (580)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 258 (580)
...|++++|+..|++..+. .| +...+..+..... ...+..+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 6666666666666666653 33 2222222210000 00111224556666666
Q ss_pred HHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 259 SKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 259 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666665542 345566666666666666666666666666532 2244556666666666677777777666665
Q ss_pred HhcCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHhHcCCCCC-H----HHHHHHHHHHHhcCCchHHHH
Q 046803 336 QEYGLLPGVEHHV------------CMVDLFGRAGLLNEAYKFVKDVIGEKPA-P----AVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 336 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~p~-~----~~~~~ll~~~~~~g~~~~a~~ 398 (580)
+... .+...+. .+...+.+.|++++|.+.+++.+...|+ . ..+..+...+...|++++|+.
T Consensus 216 ~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCc--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 4321 1122221 2356677888888888888777765664 2 224456778888888888888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 399 VAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=198.11 Aligned_cols=389 Identities=10% Similarity=0.002 Sum_probs=298.6
Q ss_pred cCCCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHccCC---CCChhhHHHHHHHHHcCCCccHHHHH
Q 046803 17 AGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFCIP---SPDSFLFNTLIIRNSKANFSTDSLLF 93 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 93 (580)
..++.+.+...+..+++... .++..+..+...+...|++++|.+.|+.+. +.+..+|..+...+.+.|++++|+..
T Consensus 37 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44677888899998888652 367788888888999999999999999764 35678899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhC------CCCchH-------------------------
Q 046803 94 YRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG------YDSDLH------------------------- 142 (580)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g------~~~~~~------------------------- 142 (580)
|+.+. ..|+... ..+..+...+....+...+..++... ..|+..
T Consensus 116 ~~~~~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 116 LSVLS---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHh---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 97442 2233221 11223333444566777777664421 111111
Q ss_pred -----HHHHHHHHHHhC--------CCHHHHHHHHccCCCC--C--------hhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 046803 143 -----VQAALVNFYAKS--------NNVDVARKVFDRMPDK--S--------VVAWNSMISGYEQNGFAKEAIGLFNLMR 199 (580)
Q Consensus 143 -----~~~~li~~y~~~--------g~~~~A~~~f~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 199 (580)
....+...+... |++++|..+|+++.+. + ..+|..+...+...|++++|+..|++..
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 333344443333 4789999999887652 2 2357777888999999999999999999
Q ss_pred HCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHH
Q 046803 200 DFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAW 276 (580)
Q Consensus 200 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~ 276 (580)
+. .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...|
T Consensus 271 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 271 NL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred hc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 85 5677888999999999999999999999999876 56788999999999999999999999998864 456789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP----GVEHHVCMVD 352 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~ 352 (580)
..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+..
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999999999853 33456888889999999999999999999875432112 2233445667
Q ss_pred HHHHc----------CCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHH
Q 046803 353 LFGRA----------GLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415 (580)
Q Consensus 353 ~~~~~----------g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 415 (580)
.|.+. |++++|...|++.+...| +..+|..+...+...|++++|...+++++++.|.++....
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 78888 999999999988887777 4888999999999999999999999999999998766544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.1e-20 Score=181.12 Aligned_cols=327 Identities=11% Similarity=0.019 Sum_probs=232.2
Q ss_pred ChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 046803 70 DSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVN 149 (580)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 149 (580)
|+..|..+...+.+.|++++|+..|+++..... .+..++..+...+...|++++|...+..+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 456788899999999999999999999988632 356788888899999999999999999999885 446788999999
Q ss_pred HHHhCCCHHHHHHHHccCCCCC------hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCCh
Q 046803 150 FYAKSNNVDVARKVFDRMPDKS------VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDI 223 (580)
Q Consensus 150 ~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 223 (580)
+|.+.|++++|...|++..+.+ ...|..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 9999999999999999886532 234443321100 01122233344455555
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMR 300 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 300 (580)
++|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|...|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555443 33445555555555555666666555555442 344556666666666666666666666665
Q ss_pred hCCCCCCH-HH------------HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 046803 301 AHGVRPNN-VT------------FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFGRAGLLNEAYK 365 (580)
Q Consensus 301 ~~g~~pd~-~t------------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~ 365 (580)
+. .|+. .. ...+...+...|++++|...++.+.+...-.+. ...+..+...+...|++++|.+
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 53 2322 11 123356688899999999999988764322111 1335567889999999999999
Q ss_pred HHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046803 366 FVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 366 ~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 424 (580)
.+++.+...| ++.+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9988887777 5888999999999999999999999999999999988888887776543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-19 Score=176.34 Aligned_cols=287 Identities=11% Similarity=0.039 Sum_probs=217.1
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHH
Q 046803 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214 (580)
Q Consensus 138 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 214 (580)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44455556666667777777777777766543 244566667777777788888888887777642 33556777777
Q ss_pred HHHHhCC-ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChH
Q 046803 215 AACAQLG-DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGT 290 (580)
Q Consensus 215 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 290 (580)
..+...| ++++|...+..+.+.. +.+...+..+..+|...|++++|.+.|+++.+ .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7888888888877765 45667777888888888888888888887663 34567777888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC-------CCCHHHHHHHHHHHHHcCCHHHH
Q 046803 291 EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL-------LPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 291 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~~~li~~~~~~g~~~~A 363 (580)
+|+..|++..+.. +.+...+..+...+...|++++|...++.+.+...- +.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888742 234567778888888889999999888888754211 23467888899999999999999
Q ss_pred HHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH-hcCCh
Q 046803 364 YKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA-LAGRM 427 (580)
Q Consensus 364 ~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-~~g~~ 427 (580)
.+.+++.+...| +..+|..+...+...|++++|...+++++++.|+++..+..++.++. ..|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999988887666 47788899999999999999999999999999999999999988884 55554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=183.42 Aligned_cols=285 Identities=10% Similarity=0.033 Sum_probs=138.3
Q ss_pred ccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 046803 52 DAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131 (580)
Q Consensus 52 ~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 131 (580)
+.+++++|.+++++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5668999999999997765 8999999999999999999999763 5778999999999999999999998888
Q ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHH
Q 046803 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211 (580)
Q Consensus 132 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 211 (580)
+.+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45678899999999999999999988864 67789999999999999999999999977 4899
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHH
Q 046803 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291 (580)
Q Consensus 212 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (580)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999988 378999999999999999999988777655 444445578999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhHHhcCCCC------CHHHHHHHHHHHHHcCCHHHH
Q 046803 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHA--GLVQEGHRVFASMRQEYGLLP------GVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 292 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A 363 (580)
|+.+++...... +-....|+.+.-+|++- +++.+..+.|. ++.+++| +...|..++-.|...++++.|
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 999999988643 33345666666566543 34444444443 3335555 467889999999999999999
Q ss_pred HHHHHh
Q 046803 364 YKFVKD 369 (580)
Q Consensus 364 ~~~~~~ 369 (580)
...+-+
T Consensus 302 ~~tm~~ 307 (449)
T 1b89_A 302 IITMMN 307 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876633
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-18 Score=167.33 Aligned_cols=265 Identities=12% Similarity=0.065 Sum_probs=231.6
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHh
Q 046803 170 KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLI 249 (580)
Q Consensus 170 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 249 (580)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..++..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888999999999999999999998763 3455677778888899999999999999999875 66788899999
Q ss_pred hHhhhcC-CHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 046803 250 NMYARCG-NVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325 (580)
Q Consensus 250 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 325 (580)
..|...| ++++|.+.|++..+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998774 456789999999999999999999999999853 224567777889999999999
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC----------CCCHHHHHHHHHHHHhcCCchH
Q 046803 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE----------KPAPAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 326 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~~ll~~~~~~g~~~~ 395 (580)
+|...++.+.+ ..+.+...+..+...|.+.|++++|.+.+++.+.. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999974 22335788999999999999999999999877733 2246789999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
|+..++++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-19 Score=175.91 Aligned_cols=282 Identities=11% Similarity=-0.051 Sum_probs=222.1
Q ss_pred HHhCCCHHHHHH-HHccCCC-----C--ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC
Q 046803 151 YAKSNNVDVARK-VFDRMPD-----K--SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222 (580)
Q Consensus 151 y~~~g~~~~A~~-~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 222 (580)
|.-.|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334577888887 7775443 1 34568888888889999999999999888763 3456678888888888999
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-ChHHHHH---------------HHHHHH
Q 046803 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-NVIAWTA---------------MISGYG 284 (580)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 284 (580)
+++|...+..+.+.. +.+..++..+..+|...|++++|.+.|+++.+ | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999998888876 56778888888899999999999998887764 2 2222221 133334
Q ss_pred hcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046803 285 MHGYGTEAVELFHRMRAHGVR-PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 363 (580)
..|++++|+..|+++.+.... ++..++..+...+...|++++|...|+++.+. .+.+...+..+...|.+.|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999999884322 14788889999999999999999999999864 233578899999999999999999
Q ss_pred HHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCChhHHH
Q 046803 364 YKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN-----------PGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 364 ~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~a~ 431 (580)
.+.+++++...|+ ..+|..+..++...|++++|...+++++++.|++ +.+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999888877774 8889999999999999999999999999988877 789999999999999999999
Q ss_pred HHHHH
Q 046803 432 VVRNI 436 (580)
Q Consensus 432 ~~~~~ 436 (580)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 98764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-17 Score=170.30 Aligned_cols=393 Identities=11% Similarity=0.069 Sum_probs=294.5
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKS 115 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 115 (580)
|...|..++. +...++++.|+.+|+++.+ .+...|...+..+.+.|++++|..+|++.+.. .|+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 6778888886 4678999999999998754 35668999999999999999999999999875 4677766666643
Q ss_pred H-HccCChHHHHH----HHHHHHHh-CCCC-chHHHHHHHHHHHh---------CCCHHHHHHHHccCCC-CC---hhHH
Q 046803 116 C-AHLSILNLGRA----VHCHVFVS-GYDS-DLHVQAALVNFYAK---------SNNVDVARKVFDRMPD-KS---VVAW 175 (580)
Q Consensus 116 ~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~f~~~~~-~~---~~~~ 175 (580)
. ...|+.+.|++ +|+.+++. |..| +..+|...+....+ .|+++.|+.+|++..+ |+ ...|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 34577776655 77777654 5443 56788888887765 6889999999998765 22 1344
Q ss_pred HHHHHHH-------------HhCCChhHHHHHHHHHH------HCC---CCCCh--------hHHHHHHHHHHhC----C
Q 046803 176 NSMISGY-------------EQNGFAKEAIGLFNLMR------DFG---VNPDS--------TTCVCVLAACAQL----G 221 (580)
Q Consensus 176 ~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~t~~~ll~a~~~~----~ 221 (580)
....... .+.+++.+|..++.... +.. ++|+. ..|...+...... +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 4332211 12356777877776632 211 24431 3444444333221 2
Q ss_pred Ch----HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh-------cCCHH-------HHHHHHHhccC---C-ChHHHHHH
Q 046803 222 DI----DLGRWVHEFIVGQGLDVNVVLATSLINMYAR-------CGNVS-------KAREIFDMMSE---L-NVIAWTAM 279 (580)
Q Consensus 222 ~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~l 279 (580)
+. +.+..+|+++++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 32 36778899988874 6678889888888876 79987 99999998764 3 57789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH-HH
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNN--VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDL-FG 355 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~~ 355 (580)
+..+.+.|++++|..+|+++.+ ..|+. ..|...+..+.+.|++++|.++|++..+. .| +...|...+.+ +.
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHH
Confidence 9999999999999999999998 45653 47888888888999999999999999753 33 33334333322 34
Q ss_pred HcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc----hHHHHHHHHHhcCChhHH
Q 046803 356 RAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG----HYVMLSNIYALAGRMDRV 430 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~~~a 430 (580)
..|++++|..+|++++...| ++..|..++..+...|+.++|..+|+++++..|.++. .|...+......|+.+.+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 68999999999988887777 4889999999999999999999999999998877665 777778888899999999
Q ss_pred HHHHHHHHhC
Q 046803 431 EVVRNIMIQK 440 (580)
Q Consensus 431 ~~~~~~m~~~ 440 (580)
.++.+++.+.
T Consensus 483 ~~~~~r~~~~ 492 (530)
T 2ooe_A 483 LKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=174.24 Aligned_cols=262 Identities=9% Similarity=-0.082 Sum_probs=218.8
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhh
Q 046803 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250 (580)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 250 (580)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...+.++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45678999999999999999999999998763 4467789999999999999999999999999875 567889999999
Q ss_pred HhhhcCCHHHHHHHHHhccCCC-------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 046803 251 MYARCGNVSKAREIFDMMSELN-------------VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR-PNNVTFVAVLS 316 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~ 316 (580)
+|.+.|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999887421 223344578899999999999999999985322 25788999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~ 395 (580)
.+...|++++|...|+++.+. .+.+...|..+..+|.+.|++++|++.|++++...|+ ..+|..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999864 2345889999999999999999999999998888885 8889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 396 GVEVAEHLLSVEPE------------NPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 396 a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
|...+++++++.|+ +...+..|+.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876 367889999999999999998887664
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-16 Score=161.24 Aligned_cols=352 Identities=12% Similarity=0.015 Sum_probs=289.9
Q ss_pred CCChhhHHHHHHHHHc----CCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCC
Q 046803 68 SPDSFLFNTLIIRNSK----ANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH----LSILNLGRAVHCHVFVSGYDS 139 (580)
Q Consensus 68 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~ 139 (580)
..|+.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|...+.++.+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467777777777777 789999999999988764 55667777777777 889999999999988875
Q ss_pred chHHHHHHHHHHHh----CCCHHHHHHHHccCCCC-ChhHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHH
Q 046803 140 DLHVQAALVNFYAK----SNNVDVARKVFDRMPDK-SVVAWNSMISGYEQ----NGFAKEAIGLFNLMRDFGVNPDSTTC 210 (580)
Q Consensus 140 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 210 (580)
+...+..|..+|.. .+++++|.+.|++..+. +..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677778888888 88999999999876553 66788888888887 789999999999998865 67778
Q ss_pred HHHHHHHHh----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh----cCCHHHHHHHHHhccC-CChHHHHHHHH
Q 046803 211 VCVLAACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR----CGNVSKAREIFDMMSE-LNVIAWTAMIS 281 (580)
Q Consensus 211 ~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 281 (580)
..+...+.. .++.++|..++....+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888877 789999999999998875 45677788888876 7899999999998765 56677888888
Q ss_pred HHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 282 GYGM----HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA-----GLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 282 ~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
.|.. .++.++|+..|++..+.| +...+..+...|... ++.++|...|++..+. .+...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8887 899999999999988764 455666777777777 8999999999998753 34567777888
Q ss_pred HHHHcC---CHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh--
Q 046803 353 LFGRAG---LLNEAYKFVKDVIGEKPAPAVWTAMLGACKM----HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL-- 423 (580)
Q Consensus 353 ~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-- 423 (580)
+|.+.| ++++|.+.|+++... .++..+..|...|.. .+++++|...++++.+.+ ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 888766 789999999877754 468889999999988 899999999999998865 57889999999998
Q ss_pred --cCChhHHHHHHHHHHhCC
Q 046803 424 --AGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 424 --~g~~~~a~~~~~~m~~~~ 441 (580)
.+++++|.+.+++..+.+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 899999999999998865
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-16 Score=165.00 Aligned_cols=365 Identities=10% Similarity=0.007 Sum_probs=302.6
Q ss_pred ChhhhchHHHHHhc----cCChhHHHHHHccCCC-CChhhHHHHHHHHHc----CCCccHHHHHHHHHHHCCCCCChhhH
Q 046803 39 SRSMLTKLLSLVCD----AGFITYAQRIFFCIPS-PDSFLFNTLIIRNSK----ANFSTDSLLFYRRMIVSNISPSNYTF 109 (580)
Q Consensus 39 ~~~~~~~ll~~~~~----~~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 109 (580)
++.....|-..|.. .++++.|...|+...+ .+..++..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55555555555555 6799999999986543 577889999999998 899999999999998865 55667
Q ss_pred HHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----CCCHHHHHHHHccCCC-CChhHHHHHHH
Q 046803 110 SAVIKSCAH----LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAK----SNNVDVARKVFDRMPD-KSVVAWNSMIS 180 (580)
Q Consensus 110 ~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~ 180 (580)
..+-..+.. .+++++|...++++.+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..|..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777776 789999999999999876 56778888888987 8899999999987654 47788999999
Q ss_pred HHHh----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 181 GYEQ----NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 181 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
.|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|..++....+.| +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 9998 899999999999998865 56677778888876 789999999999998875 456677788888
Q ss_pred hh----cCCHHHHHHHHHhccC-CChHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 046803 253 AR----CGNVSKAREIFDMMSE-LNVIAWTAMISGYGMH-----GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG 322 (580)
Q Consensus 253 ~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 322 (580)
.. .++.++|.+.|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 87 8999999999998875 4677888888888887 89999999999999865 4556777777777766
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cC
Q 046803 323 ---LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR----AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM----HK 391 (580)
Q Consensus 323 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~----~g 391 (580)
+.++|.++|++..+. .+...+..|..+|.. .+++++|.+.|+++.... ++..+..|...|.. .+
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCC
Confidence 789999999998763 467788889999998 899999999998877543 67888899999988 89
Q ss_pred CchHHHHHHHHHHhcCCC---CcchHHHHHHHHHh
Q 046803 392 NFDLGVEVAEHLLSVEPE---NPGHYVMLSNIYAL 423 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 423 (580)
++++|...|+++.+.+|+ ++.....|+.++..
T Consensus 418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999999999999854 67777777776654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-17 Score=167.19 Aligned_cols=368 Identities=13% Similarity=0.017 Sum_probs=245.6
Q ss_pred ChhhHHHHHHHHHcCCCccHHHHHHHHHHHC-----C--CCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHhC-----
Q 046803 70 DSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-----N--ISP-SNYTFSAVIKSCAHLSILNLGRAVHCHVFVSG----- 136 (580)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----- 136 (580)
.+..||.|...+...|++++|++.|++.++. + ..| ...+|..+...+...|++++|...++++++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888989999999999999999886541 1 123 34578888888999999999999998887641
Q ss_pred -CC-CchHHHHHHHHHHHh--CCCHHHHHHHHccCCC--C-ChhHHHHHHHH---HHhCCChhHHHHHHHHHHHCCCCCC
Q 046803 137 -YD-SDLHVQAALVNFYAK--SNNVDVARKVFDRMPD--K-SVVAWNSMISG---YEQNGFAKEAIGLFNLMRDFGVNPD 206 (580)
Q Consensus 137 -~~-~~~~~~~~li~~y~~--~g~~~~A~~~f~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 206 (580)
.. ....+++.+..++.+ .+++++|...|++..+ | +...+..+... +...++.++|++.|++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 11 124556555555544 4578999999987653 3 45556555544 345678888999998887743 234
Q ss_pred hhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHH
Q 046803 207 STTCVCVLAACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAM 279 (580)
Q Consensus 207 ~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 279 (580)
...+..+...+.. .++.++|.+++.+..+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 4556555555544 356788999999888875 66778888999999999999999999988764 345567666
Q ss_pred HHHHHhc-------------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 046803 280 ISGYGMH-------------------GYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340 (580)
Q Consensus 280 i~~~~~~-------------------g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 340 (580)
...|... +..++|...|++..+.. +.+..++..+...+...|++++|...|++..+. ..
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~ 365 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-EL 365 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CC
Confidence 6655432 33567888888877642 223456778888999999999999999998753 22
Q ss_pred CCCH--HHHHHHHHH-HHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 341 LPGV--EHHVCMVDL-FGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 341 ~p~~--~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
.+.. ..+..+... +...|++++|++.|++++.+.|+...+... .+.+..++++.++.+|+++.+|..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2221 123333332 346899999999999999888875433322 3455677888899999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 046803 418 SNIYALAGRMDRVEVVRNIMIQKGLKKHVGYST 450 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 450 (580)
+.+|...|++++|.+.+++..+.+-......+|
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHCC----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999999999998876554444454
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.5e-17 Score=154.48 Aligned_cols=268 Identities=10% Similarity=-0.019 Sum_probs=215.4
Q ss_pred HHhCCCHHHHHHHHccCCCCCh----hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHH
Q 046803 151 YAKSNNVDVARKVFDRMPDKSV----VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLG 226 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 226 (580)
....|+++.|+..++.....+. .....+..+|...|++++|+..++.. -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4567889999998887665432 34456788899999999998866542 356677888888888899999999
Q ss_pred HHHHHHHHHcCC-CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 046803 227 RWVHEFIVGQGL-DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR 305 (580)
Q Consensus 227 ~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 305 (580)
.+.++.+...+. |.+...+..+..+|.+.|++++|.+.|++ ..+...+..++..|.+.|+.++|...|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 999999888764 44667778888999999999999999998 567889999999999999999999999999985 4
Q ss_pred CCHHHH---HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHH
Q 046803 306 PNNVTF---VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWT 381 (580)
Q Consensus 306 pd~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 381 (580)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.+++++...| ++.+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 665322 12333444568999999999999875 345788999999999999999999999999998888 588999
Q ss_pred HHHHHHHhcCCchH-HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 046803 382 AMLGACKMHKNFDL-GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEV 432 (580)
Q Consensus 382 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 432 (580)
.++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 99999999999976 6789999999999987643 34555555555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-18 Score=168.01 Aligned_cols=276 Identities=13% Similarity=0.049 Sum_probs=208.7
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHH-HHHHHHHCCC-CC--ChhHHHHHHHHHHhCCChHHHHHHH
Q 046803 155 NNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIG-LFNLMRDFGV-NP--DSTTCVCVLAACAQLGDIDLGRWVH 230 (580)
Q Consensus 155 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~ 230 (580)
+.++.+...|+.+...+.. ++...|++++|++ .|++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555555555443322 3445688999998 8887654311 11 3456888999999999999999999
Q ss_pred HHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 046803 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN 307 (580)
Q Consensus 231 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 307 (580)
..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.... |+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~ 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PA 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC
Confidence 9999886 66888999999999999999999999998764 467899999999999999999999999999853 33
Q ss_pred HH-HHHH---------------HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 308 NV-TFVA---------------VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 308 ~~-t~~~---------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
.. .+.. .+..+...|++++|...|+.+.+.....++...+..+...|.+.|++++|.+.+++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 1111 2334448899999999999998653332358889999999999999999999998888
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 372 GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 372 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
...|+ ..+|..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77774 8899999999999999999999999999999999999999999999999999999999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-18 Score=169.59 Aligned_cols=232 Identities=13% Similarity=0.047 Sum_probs=199.8
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHH
Q 046803 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISG 282 (580)
Q Consensus 206 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 282 (580)
+...+..+...+.+.|++++|..++..+++.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568889999999999999999999999886 66889999999999999999999999998874 457899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 046803 283 YGMHGYGTEAVELFHRMRAHGVRPNN-----------VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMV 351 (580)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~g~~pd~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 351 (580)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+|+++.+.....++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3332 2233457788999999999999999987533323688999999
Q ss_pred HHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 046803 352 DLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430 (580)
Q Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 430 (580)
..|.+.|++++|++.+++++...| +..+|..+..+|...|++++|+..++++++..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998887777 4889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 046803 431 EVVRNIMIQK 440 (580)
Q Consensus 431 ~~~~~~m~~~ 440 (580)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-19 Score=173.47 Aligned_cols=282 Identities=11% Similarity=0.088 Sum_probs=138.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHH
Q 046803 118 HLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNL 197 (580)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 197 (580)
+.|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 557788888888877 23458899999999999999999999764 5667889999999999999999997776
Q ss_pred HHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHH
Q 046803 198 MRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWT 277 (580)
Q Consensus 198 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 277 (580)
.++. .+++.+.+.++.+|.+.|+++++.+++. .|+..+|+.+.+.|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 6663 4567788889999999999998887774 367779999999999999999999999987 4899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc
Q 046803 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA 357 (580)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 357 (580)
.++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHC
Confidence 9999999999999999999988 2778999999999999999999554432 223445566788999999
Q ss_pred CCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc--CCchHHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCChhH
Q 046803 358 GLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH--KNFDLGVEVAEHLLSVEP-----ENPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 358 g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~ 429 (580)
|++++|..+++..++.++ ....|.-|.-+|.+. ++..+.+++|..-+.+.| .++..|..+...|...++++.
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 999999999999998876 477788887777765 355666666665555556 678899999999999999998
Q ss_pred HHHH
Q 046803 430 VEVV 433 (580)
Q Consensus 430 a~~~ 433 (580)
|...
T Consensus 301 A~~t 304 (449)
T 1b89_A 301 AIIT 304 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=162.18 Aligned_cols=260 Identities=8% Similarity=-0.071 Sum_probs=196.7
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345566666666777777777776666542 2344566666666667777777777777766654 44566666677777
Q ss_pred hhcCCHHHHHHHHHhccC--C-ChHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSE--L-NVIAWTAM--------------IS-GYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAV 314 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 314 (580)
...|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777766553 1 12222222 22 3677788999999999988753 2366788888
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCc
Q 046803 315 LSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNF 393 (580)
Q Consensus 315 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~ 393 (580)
...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++.+...| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 89999999999999999998763 233578889999999999999999999988887777 488899999999999999
Q ss_pred hHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 394 DLGVEVAEHLLSVEPE------------NPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 394 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
++|...++++++..|. ++..+..++.+|...|++++|..++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999998 7889999999999999999999988754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=8e-16 Score=161.70 Aligned_cols=365 Identities=10% Similarity=0.020 Sum_probs=270.6
Q ss_pred CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 046803 69 PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALV 148 (580)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 148 (580)
.|..+|..++. +.+.|++++|..+|+++... .+-+...|...+..+.+.|+++.|+.+|+++++.. |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 47889999998 57899999999999999875 23355678888999999999999999999998875 5777887777
Q ss_pred H-HHHhCCCHHHHHH----HHccCC------CCChhHHHHHHHHHHh---------CCChhHHHHHHHHHHHCCCCCChh
Q 046803 149 N-FYAKSNNVDVARK----VFDRMP------DKSVVAWNSMISGYEQ---------NGFAKEAIGLFNLMRDFGVNPDST 208 (580)
Q Consensus 149 ~-~y~~~g~~~~A~~----~f~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ 208 (580)
. .....|+.++|++ +|++.. ..+...|...+....+ .|++++|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 5 3345677777665 666542 1356788888887665 788999999999998731111123
Q ss_pred HHHHHHHHH-------------HhCCChHHHHHHHHHHH------HcC---CCCc--------HHHhhHHhhHhhhc---
Q 046803 209 TCVCVLAAC-------------AQLGDIDLGRWVHEFIV------GQG---LDVN--------VVLATSLINMYARC--- 255 (580)
Q Consensus 209 t~~~ll~a~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~y~~~--- 255 (580)
.|....... ...+.++.|..++.... +.. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333222211 12345666777666532 221 2433 24555555433221
Q ss_pred -CCH----HHHHHHHHhccC---CChHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCC-CHHHHH
Q 046803 256 -GNV----SKAREIFDMMSE---LNVIAWTAMISGYGM-------HGYGT-------EAVELFHRMRAHGVRP-NNVTFV 312 (580)
Q Consensus 256 -g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p-d~~t~~ 312 (580)
++. +.|..+|++... .+...|..++..+.+ .|+.+ +|..+|++..+. +.| +...+.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHH
Confidence 232 467778887764 467789888888876 79987 999999999863 345 467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHH-HH
Q 046803 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPG-V-EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGA-CK 388 (580)
Q Consensus 313 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~-~~ 388 (580)
.++..+.+.|++++|..+|+++.+ +.|+ . ..|..++..+.+.|++++|.++|++++...|+ ...|...... +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 888899999999999999999985 3454 3 58999999999999999999999999877664 3333333322 34
Q ss_pred hcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 389 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
..|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..++++....+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 68999999999999999999999999999999999999999999999998764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.9e-17 Score=154.66 Aligned_cols=248 Identities=9% Similarity=0.036 Sum_probs=205.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcC
Q 046803 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDS--TTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256 (580)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 256 (580)
|.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678999999999987654 34544 3556678999999999999876543 24678888999999999999
Q ss_pred CHHHHHHHHHhccC----C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046803 257 NVSKAREIFDMMSE----L-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVF 331 (580)
Q Consensus 257 ~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 331 (580)
+.++|.+.++++.. | +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998742 4 466777888999999999999999987 456778888999999999999999999
Q ss_pred HHhHHhcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 332 ASMRQEYGLLPGVE---HHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 332 ~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
+.+.+. .|+.. ....++..+...|++++|..+|++++...| ++..|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999864 35532 123344555566999999999988887677 58899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhH-HHHHHHHHHhCC
Q 046803 408 PENPGHYVMLSNIYALAGRMDR-VEVVRNIMIQKG 441 (580)
Q Consensus 408 p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~~~~ 441 (580)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 578998887643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-16 Score=161.63 Aligned_cols=364 Identities=8% Similarity=-0.086 Sum_probs=244.0
Q ss_pred hhhhchHHHHHhccCChhHHHHHHccCC------------CCChhhHHHHHHHHHcCCCccHHHHHHHHHHHC-----C-
Q 046803 40 RSMLTKLLSLVCDAGFITYAQRIFFCIP------------SPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVS-----N- 101 (580)
Q Consensus 40 ~~~~~~ll~~~~~~~~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 101 (580)
...+|.|-..+...|++++|++.|++.. ....++|+.+...|...|++++|...|++.... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4578888888889999999999887531 235678999999999999999999999887542 1
Q ss_pred CCC-ChhhHHHHHHHHHc--cCChHHHHHHHHHHHHhCCCCchHHHHHHHHH---HHhCCCHHHHHHHHccCCC---CCh
Q 046803 102 ISP-SNYTFSAVIKSCAH--LSILNLGRAVHCHVFVSGYDSDLHVQAALVNF---YAKSNNVDVARKVFDRMPD---KSV 172 (580)
Q Consensus 102 ~~p-~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---y~~~g~~~~A~~~f~~~~~---~~~ 172 (580)
..+ ...++.....++.. .+++++|...|+++++.. +.++..+..+..+ +...++.++|.+.|++..+ .+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 112 23455555444444 457899999999999886 3355556555554 3456777888888776532 355
Q ss_pred hHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHH
Q 046803 173 VAWNSMISGYEQ----NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL 248 (580)
Q Consensus 173 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 248 (580)
..+..+...+.. .|++++|.+.|++..... +.+...+..+...+...|++++|...+..+.+.. |.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 667666655544 467889999999988753 4456688899999999999999999999999875 5567777777
Q ss_pred hhHhhhc-------------------CCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 046803 249 INMYARC-------------------GNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP 306 (580)
Q Consensus 249 i~~y~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 306 (580)
..+|... +..+.|...|+...+ .+..+|..+...|...|++++|+..|++..+....|
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 7776432 235667777776653 456688999999999999999999999998854433
Q ss_pred CHH--HHHHHHH-HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHH
Q 046803 307 NNV--TFVAVLS-ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTA 382 (580)
Q Consensus 307 d~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 382 (580)
... .+..+.. ...+.|+.++|...|++..+ +.|+..... +....+.+++++.+...| ++.+|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 321 2223332 34578999999999998874 456533222 223445566666666667 5788999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 418 (580)
|...+...|++++|++.|+++++++|.+|.+...++
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999999998887766554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-17 Score=157.47 Aligned_cols=273 Identities=11% Similarity=-0.019 Sum_probs=174.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHH
Q 046803 107 YTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYE 183 (580)
Q Consensus 107 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 183 (580)
..+......+...|++++|..+++.+++.. +.+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345556666777777777777777777664 33556666677777777777777777766543 24556666777777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHH-hh-HhhhcCCHHH
Q 046803 184 QNGFAKEAIGLFNLMRDFGVNPDST-TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSL-IN-MYARCGNVSK 260 (580)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~y~~~g~~~~ 260 (580)
..|++++|++.|+++.+. .|+.. .+..+...+ ++......+ .. .+...|++++
T Consensus 101 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS--QPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 777777777777776654 22222 222110000 000011111 22 3666677777
Q ss_pred HHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 261 AREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 261 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
|.+.|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+++.+.
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777776653 356677777777777788888888887777642 224566777777788888888888888877653
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-------------HHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-------------PAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 338 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
.+.+...+..+...|.+.|++++|.+.+++.+...|+ ..+|..+..++...|++++|...+++.+
T Consensus 236 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 236 --NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred --CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1234667777888888888888888888776654444 5667788888888888888888877665
Q ss_pred hcC
Q 046803 405 SVE 407 (580)
Q Consensus 405 ~~~ 407 (580)
+..
T Consensus 314 ~~~ 316 (327)
T 3cv0_A 314 EPF 316 (327)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-14 Score=155.23 Aligned_cols=382 Identities=11% Similarity=0.100 Sum_probs=238.3
Q ss_pred CHHHHHHHHhcCCCCchHHHHHHHHHHhCC--CCChhhhchHHHHHhccCChhHHHHHHccCCC-CC-----hhhHHHHH
Q 046803 7 HSPAYEAILKAGPRLKPLQQVHAHLIVAGY--GRSRSMLTKLLSLVCDAGFITYAQRIFFCIPS-PD-----SFLFNTLI 78 (580)
Q Consensus 7 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~-~~-----~~~~~~li 78 (580)
|...|..+|.... +.=+++..+.+...+ ..|+.--...+++|...+.+.+|.++++++.- |+ ...-|.++
T Consensus 952 d~~lW~~vl~~~n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi 1029 (1630)
T 1xi4_A 952 DPELWGSVLLESN--PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLI 1029 (1630)
T ss_pred CHHHHHHHhcCCc--HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHH
Confidence 4455666665433 223344444444332 22333445556666677788888887776541 21 22333344
Q ss_pred H---------------------------HHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 046803 79 I---------------------------RNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCH 131 (580)
Q Consensus 79 ~---------------------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 131 (580)
. .+...|.+++|..+|++.. . .....+.++. ..+++++|.++..+
T Consensus 1030 ~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aer 1101 (1630)
T 1xi4_A 1030 LTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAER 1101 (1630)
T ss_pred HHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHh
Confidence 3 3445556666666665531 1 1111122221 34555555555543
Q ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHH
Q 046803 132 VFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCV 211 (580)
Q Consensus 132 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 211 (580)
+ .++.+|..+..++.+.|++++|...|.+. .|...|..++..+.+.|++++|++.|...++.. +++...+
T Consensus 1102 v------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt 1171 (1630)
T 1xi4_A 1102 C------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVET 1171 (1630)
T ss_pred c------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccH
Confidence 3 23566666777777777777777777553 455666667777777777777777776655542 3333333
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHH
Q 046803 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTE 291 (580)
Q Consensus 212 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (580)
.++.+|++.++++....+ ++ .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++
T Consensus 1172 ~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A 1172 ELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred HHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHH
Confidence 466666666666643322 11 334445556777777777777777777764 467777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 292 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
|++.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+
T Consensus 1240 AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1240 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777765 2456777777777777777777665432 23456677789999999999999999998888
Q ss_pred CCCCC-HHHHHHHHHHHHhc--CCchHHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCChhHHHH
Q 046803 372 GEKPA-PAVWTAMLGACKMH--KNFDLGVEVAEHLLSVEP-----ENPGHYVMLSNIYALAGRMDRVEV 432 (580)
Q Consensus 372 ~~~p~-~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~a~~ 432 (580)
+.+|. ...|.-|...+.+. ++..++.+.|..-..+.| .+...|..+...|.+.|+|+.|..
T Consensus 1308 ~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1308 GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88774 56676666666654 466777777776666555 567889999999999999999984
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-14 Score=154.18 Aligned_cols=373 Identities=13% Similarity=0.084 Sum_probs=257.1
Q ss_pred HhcCCCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCChhHHHHHHcc-----CCC-CChhhHHHHHHHHHcCCCcc
Q 046803 15 LKAGPRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGFITYAQRIFFC-----IPS-PDSFLFNTLIIRNSKANFST 88 (580)
Q Consensus 15 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~f~~-----~~~-~~~~~~~~li~~~~~~g~~~ 88 (580)
++-|..-..-+..-.+++++ .|+.+|+.++ ...+ +.-+.+.+. .++ .|+.--...+..|...|.+.
T Consensus 931 i~vt~~n~l~k~~arylv~r---~d~~lW~~vl----~~~n-~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~ 1002 (1630)
T 1xi4_A 931 INVCNENSLFKSLSRYLVRR---KDPELWGSVL----LESN-PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPN 1002 (1630)
T ss_pred HHHHhcchhHHHHHHHHHHh---cCHHHHHHHh----cCCc-HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHH
Confidence 33333333445555566664 5889999888 4332 222333332 121 23333355678889999999
Q ss_pred HHHHHHHHHHHCCC--CCChhhHHHHHHH---------------------------HHccCChHHHHHHHHHHHHhCCCC
Q 046803 89 DSLLFYRRMIVSNI--SPSNYTFSAVIKS---------------------------CAHLSILNLGRAVHCHVFVSGYDS 139 (580)
Q Consensus 89 ~A~~~~~~m~~~g~--~p~~~t~~~ll~a---------------------------~~~~~~~~~a~~~~~~~~~~g~~~ 139 (580)
+|++++++....+- .-+...-+.++.+ +...|.+++|..+|++.. .
T Consensus 1003 EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~ 1077 (1630)
T 1xi4_A 1003 ELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD-----V 1077 (1630)
T ss_pred HHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC-----C
Confidence 99999999984421 0122223333333 334445555555554431 1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 046803 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ 219 (580)
Q Consensus 140 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 219 (580)
.....+.+ +-..+++++|.++.++. .+..+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+
T Consensus 1078 ~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~ 1146 (1630)
T 1xi4_A 1078 NTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANT 1146 (1630)
T ss_pred HHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHH
Confidence 11111112 12455666666666655 24668888899999999999999988653 467788889999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046803 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299 (580)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (580)
.|+++++.+.+....+.. ++..+.+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1147 lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1147 SGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred cCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 999999999998877764 44444456888899988888644442 4566777888888888999999999999874
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHH
Q 046803 300 RAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379 (580)
Q Consensus 300 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 379 (580)
..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|..... . +..++..
T Consensus 1222 ---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl-~--Iiv~~de 1282 (1630)
T 1xi4_A 1222 ---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGL-H--IVVHADE 1282 (1630)
T ss_pred ---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHH-h--hhcCHHH
Confidence 37888888999999999998888765 345788888888888899998888773 2 3335566
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhc--CChhHHHHHHH
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA--GRMDRVEVVRN 435 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~--g~~~~a~~~~~ 435 (580)
+..++..|...|.+++|+.+++..+.++|.+...|..|+.+|++- ++..++.++|.
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 778899999999999999999999999999999998888888764 45555555554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-15 Score=141.85 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
..|..+...+...|++++|+..|++..+.. ++...+..+..++...|++++|...+..+.+.. |+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~---------- 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REM---------- 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--ccc----------
Confidence 345555555555666666666665555543 444455555555555555555555555444321 000
Q ss_pred hhcCCHHHHHHHHHhccCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSELN----VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 328 (580)
.++ ..+|..+...|...|++++|+..|++..+. .|+. ..+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence 001 356667777777777777888777777763 3443 3455667788888
Q ss_pred HHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 046803 329 RVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406 (580)
Q Consensus 329 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 406 (580)
..++.+.. ..| +...+..+...+...|++++|.+.+++.+...| +..+|..+...+...|++++|+..++++++.
T Consensus 126 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 126 KKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88888764 234 466778888888999999999999988887666 4788888999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 407 EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 407 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999888764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=141.83 Aligned_cols=234 Identities=12% Similarity=0.031 Sum_probs=161.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----hhHHHH
Q 046803 141 LHVQAALVNFYAKSNNVDVARKVFDRMPD--KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG--VNPD----STTCVC 212 (580)
Q Consensus 141 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 212 (580)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46788899999999999999999987533 677899999999999999999999999987642 1112 356666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHH
Q 046803 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292 (580)
Q Consensus 213 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 292 (580)
+..++...|++++|...+..+.+.. |+. . .+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~-------------------------------~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------D-------------------------------ILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------H-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------H-------------------------------HHHHHhHHHHH
Confidence 7777777777777777777776643 221 1 23334455555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 293 VELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 293 ~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
+..++++... .| +...+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++.+
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555555542 22 2344555666666677777777777666543 12345667777777777777777777777776
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC------CCCcchHHHHH
Q 046803 372 GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE------PENPGHYVMLS 418 (580)
Q Consensus 372 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 418 (580)
...|+ ..+|..+...+...|++++|...+++++++. |.+...+..+.
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 66664 6677777778888888888888888877777 66555544443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-15 Score=140.61 Aligned_cols=242 Identities=10% Similarity=-0.100 Sum_probs=193.5
Q ss_pred hCCChhHHHHHHHHHHHCCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHH
Q 046803 184 QNGFAKEAIGLFNLMRDFGVN--P-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSK 260 (580)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 260 (580)
..|++++|+..|+++.+.... | +..++..+..++...|++++|...+..+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788899999888875321 1 34577888888889999999999999988875 5578888999999999999999
Q ss_pred HHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 261 AREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 261 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988764 45788999999999999999999999999884 566655555666667889999999999888764
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 338 YGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 338 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
.+++...+ .++..+...++.++|.+.+++.+...|+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 3777888899999999999888876663 577899999999999999999999999999987754
Q ss_pred hHHHHHHHHHhcCChhHHHHHH
Q 046803 413 HYVMLSNIYALAGRMDRVEVVR 434 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~ 434 (580)
. ...++...|++++|.+.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 4 466788889998887765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.9e-17 Score=170.14 Aligned_cols=125 Identities=16% Similarity=0.202 Sum_probs=93.7
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc-------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMS-------ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTF 311 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 311 (580)
..-..+||+||++|+++|++++|.++|..|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445678888888888888888888886653 378888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 046803 312 VAVLSACAHAGL-VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 312 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 364 (580)
+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHH
Confidence 888888888776 46777888888765 88888888887777666654444433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-15 Score=137.22 Aligned_cols=195 Identities=13% Similarity=0.087 Sum_probs=148.5
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAV 314 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l 314 (580)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777777778888888888888877654 35667777888888888888888888888774 343 4567777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHH
Q 046803 315 LSACAHA-----------GLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTA 382 (580)
Q Consensus 315 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 382 (580)
..++... |++++|...|++..+. .| +...+..+..+|...|++++|++.|++++....++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 7778888 9999999999998753 45 4778888999999999999999999888754467889999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-17 Score=171.27 Aligned_cols=161 Identities=14% Similarity=0.181 Sum_probs=129.7
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHccCC-------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH
Q 046803 138 DSDLHVQAALVNFYAKSNNVDVARKVFDRMP-------DKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTC 210 (580)
Q Consensus 138 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 210 (580)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445789999999999999999999997753 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCh-HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-----CChHHHHHHHHHHH
Q 046803 211 VCVLAACAQLGDI-DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-----LNVIAWTAMISGYG 284 (580)
Q Consensus 211 ~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~ 284 (580)
+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.- +.+.+...|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 78999999999999999999999999888776555555555433331 11333444555565
Q ss_pred hcCC---------hHHHHHHHHH
Q 046803 285 MHGY---------GTEAVELFHR 298 (580)
Q Consensus 285 ~~g~---------~~~A~~~~~~ 298 (580)
+.+. .++-.++|++
T Consensus 284 ~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 284 KDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp CCSCCCCCCCSSCHHHHHHHHHH
T ss_pred cCCCCcCccccCCHHHHHHHHHH
Confidence 5441 3455555654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-14 Score=136.31 Aligned_cols=245 Identities=11% Similarity=-0.049 Sum_probs=138.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc--HHHhhHHhhHh
Q 046803 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVN--VVLATSLINMY 252 (580)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y 252 (580)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+.+.+..++ ...+..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455555555666666655555432 12233555555555555666666665555555221111 22355555666
Q ss_pred hhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGH 328 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 328 (580)
.+.|++++|.+.|++..+ .+..+|..+...|...|++++|+..|++..+. .|+ ...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655542 33456666666666666666666666666553 333 334444442333445677777
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhHcCC---CCC------HHHHHHHHHHHHhcCCchHH
Q 046803 329 RVFASMRQEYGLLPGVEHHVCMVDLFGRAGL---LNEAYKFVKDVIGE---KPA------PAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~---~p~------~~~~~~ll~~~~~~g~~~~a 396 (580)
..|+.+.+.. +.+...+..+...+...|+ +++|...+++++.. .|+ ..+|..+...|...|++++|
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7776665421 1235555556666666666 66666666555422 133 24677788888888999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046803 397 VEVAEHLLSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 424 (580)
...++++++++|+++.+...+..+....
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 9999999999998887777666655443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-13 Score=128.19 Aligned_cols=169 Identities=10% Similarity=-0.031 Sum_probs=99.9
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACA 319 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~ 319 (580)
++..+..+|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++...+..|+ ...+..+...+.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 333344444444444444444443321 2344555555555666666666666666555223343 345555666666
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHH
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
..|++++|...|+++.+.. +.+...+..+...|.+.|++++|.+.+++.+...| +...+..+...+...|++++|..
T Consensus 153 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 6777777777776665431 22356666677777777777777777766666555 35666677777777777777777
Q ss_pred HHHHHHhcCCCCcchH
Q 046803 399 VAEHLLSVEPENPGHY 414 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~ 414 (580)
.++++++..|+++...
T Consensus 231 ~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 231 YGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHCCCCHHHH
Confidence 7777777777765443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-13 Score=125.65 Aligned_cols=226 Identities=9% Similarity=-0.029 Sum_probs=165.9
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCcHHHhh
Q 046803 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLAT 246 (580)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (580)
+..++..+...|...|++++|+..|++..+. .+...+..+...+.. .+++++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556677777777777888888888777763 244566667777777 777888888877777765 566677
Q ss_pred HHhhHhhh----cCCHHHHHHHHHhccC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046803 247 SLINMYAR----CGNVSKAREIFDMMSE-LNVIAWTAMISGYGM----HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317 (580)
Q Consensus 247 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 317 (580)
.+..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 77777777 7788888877776654 356677777777777 788888888888887754 45566666677
Q ss_pred HHh----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh
Q 046803 318 CAH----AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR----AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM 389 (580)
Q Consensus 318 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~ 389 (580)
+.. .+++++|...|++..+. .+...+..+..+|.. .+++++|.+.+++.+...| ...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHc
Confidence 776 78888888888887653 245666677788888 8888888888877765554 6667777777777
Q ss_pred ----cCCchHHHHHHHHHHhcCCCC
Q 046803 390 ----HKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 390 ----~g~~~~a~~~~~~~~~~~p~~ 410 (580)
.+++++|...++++.+.+|++
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 788888888888888887753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-14 Score=132.94 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=103.7
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33334444444444444444444443331 234455555555666666666666666655532 22344555566666
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.+++.+...| +..+|..+...+...|++++|.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 6666666666666666542 122455666677777777777777777766665555 3666777777777777777777
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHH
Q 046803 398 EVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
..++++++..|+++..+..+..+.
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHccCcchHHHHHHHHHHH
Confidence 777777777777766665554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-13 Score=130.25 Aligned_cols=241 Identities=12% Similarity=0.035 Sum_probs=185.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHH
Q 046803 144 QAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDS--TTCVCVLAACA 218 (580)
Q Consensus 144 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 218 (580)
.......|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.+-.|+. ..+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34456667788888888888877643 34558888888999999999999999998874322222 24788888899
Q ss_pred hCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHH
Q 046803 219 QLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVEL 295 (580)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 295 (580)
..|++++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|++..+ .+...|..+...+...+++++|+..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998875 55778899999999999999999999998875 4566787777344445699999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHhHHhcCCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 046803 296 FHRMRAHGVRPN-NVTFVAVLSACAHAGL---VQEGHRVFASMRQEYGLLPG------VEHHVCMVDLFGRAGLLNEAYK 365 (580)
Q Consensus 296 ~~~m~~~g~~pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~ 365 (580)
|++..+. .|+ ...+..+..++...|+ .++|...++++.+...-.|+ ...|..+...|.+.|++++|.+
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999984 444 5677777888888888 88888888888765433344 2578889999999999999999
Q ss_pred HHHhHcCCCCC-HHHHHHHHHHH
Q 046803 366 FVKDVIGEKPA-PAVWTAMLGAC 387 (580)
Q Consensus 366 ~~~~~~~~~p~-~~~~~~ll~~~ 387 (580)
.+++++...|+ ...+..+....
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHhcCccHHHHHHHhhhhh
Confidence 99999888885 55555554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-14 Score=143.20 Aligned_cols=377 Identities=10% Similarity=0.005 Sum_probs=226.9
Q ss_pred CChhhhchHHHHHhccCChhHHHHHHccCCC-CChhhHHHHHHHHHcCCCc---cHHHHHHHHHHHCCCCCChhhHHHHH
Q 046803 38 RSRSMLTKLLSLVCDAGFITYAQRIFFCIPS-PDSFLFNTLIIRNSKANFS---TDSLLFYRRMIVSNISPSNYTFSAVI 113 (580)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~ll 113 (580)
|+..+....+ +.+++++|.+.|+...+ .++.++..|...|...|++ ++|+.+|++..+. +...+..+.
T Consensus 5 p~~~la~~~~----~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg 76 (452)
T 3e4b_A 5 PDQRLANEAL----KRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLG 76 (452)
T ss_dssp -CHHHHHHHH----HHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHH
T ss_pred chHHHHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHH
Confidence 3444444445 77788888888876543 3555666666667777777 7888888877643 334444444
Q ss_pred HHHHccC-----ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH---HHHHccCCC-CChhHHHHHHHHHHh
Q 046803 114 KSCAHLS-----ILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVA---RKVFDRMPD-KSVVAWNSMISGYEQ 184 (580)
Q Consensus 114 ~a~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A---~~~f~~~~~-~~~~~~~~li~~~~~ 184 (580)
..+...+ +.++|...+.+..+.|.. ..+..|..+|...+..+.+ .+.+....+ .+...+..|...|..
T Consensus 77 ~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 77 RLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRT 153 (452)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 4333333 667888888888876632 2555666777766554333 333332221 356677778888888
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc----CC
Q 046803 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG---DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC----GN 257 (580)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~----g~ 257 (580)
.+.++++........+.-...++..+..+...+...| +.++|...+....+.| +++...+..|..+|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 7765555544333322212233447777777887888 8888888888888887 56666556677777655 78
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHH
Q 046803 258 VSKAREIFDMMSELNVIAWTAMISG-Y--GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG-----LVQEGHR 329 (580)
Q Consensus 258 ~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~ 329 (580)
+++|.+.|++....+...+..+... | ...++.++|+..|++..+.| +......|...|. .| ++++|..
T Consensus 233 ~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 233 EKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8899998888774456677777776 4 45788899999999888766 5566666666666 45 8899998
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHH
Q 046803 330 VFASMRQEYGLLPGVEHHVCMVDLFGR----AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM----HKNFDLGVEVAE 401 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~ 401 (580)
.|++.. ..+...+..|..+|.. ..++++|...|+++.... ++.....|...|.. ..+.++|...|+
T Consensus 309 ~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 309 HFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-QNSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-hHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 888764 3456667777777765 348899999997776432 34455566666653 458889999999
Q ss_pred HHHhcCCCCcchHHHHHHHH--HhcCChhHHHHHHHHHH
Q 046803 402 HLLSVEPENPGHYVMLSNIY--ALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 402 ~~~~~~p~~~~~~~~l~~~y--~~~g~~~~a~~~~~~m~ 438 (580)
++.+.++.. ....+..+. ...++..+|.++.++-+
T Consensus 383 ~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 383 LAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 988877543 333333332 23345556666655543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-13 Score=128.80 Aligned_cols=198 Identities=11% Similarity=-0.030 Sum_probs=174.2
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56677888888889999999999887763 467789999999999999999999999998853 23567888889999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a 396 (580)
...|++++|.++++++.+ .+..| +...+..+...|.+.|++++|.+.+++.+...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999875 23455 477888899999999999999999988887777 488899999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 397 VEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
...++++++..|.++..+..++.+|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998753
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.9e-14 Score=127.23 Aligned_cols=206 Identities=12% Similarity=0.024 Sum_probs=108.6
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhh
Q 046803 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250 (580)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 250 (580)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++..++.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455666666666666666666666665532 2234455555666666666666666666666554 334455555555
Q ss_pred HhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 046803 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHR 329 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~ 329 (580)
+|.+.+. . ..+ .+...|++++|+..|++..+. .|+ ...+..+..++...|++++|..
T Consensus 82 ~~~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 82 AYVALYR---------Q--AED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHH
Confidence 5544400 0 000 000116666666666666653 333 3455556666666666666666
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
.|+++.+. . .+...+..+..+|...|++++|+..|++.+...| +...+..+...+...|++++|+..+++.
T Consensus 140 ~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 140 SLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666643 2 4555666666666666777777766666665556 3566666666666667777766666654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-13 Score=125.51 Aligned_cols=197 Identities=12% Similarity=0.027 Sum_probs=124.0
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA 317 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 317 (580)
+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|...|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344555555566666666666666655442 234556666666666666666666666666532 2244556666666
Q ss_pred HHhc-CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCch
Q 046803 318 CAHA-GLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 318 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~ 394 (580)
+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|.+.+++.+...|+ ...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 6666 777777777766654 223332 455666666777777777777777666655553 666666777777777777
Q ss_pred HHHHHHHHHHhcCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 395 LGVEVAEHLLSVEP-ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 395 ~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+|...++++++..| .++..+..++..+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777777777 6666666666677777777777777766654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=9.4e-14 Score=138.18 Aligned_cols=225 Identities=10% Similarity=0.031 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCC-HHHHHHHHHhccC---CChHHHHHHHHHHH
Q 046803 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN-VSKAREIFDMMSE---LNVIAWTAMISGYG 284 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~ 284 (580)
.|..+..++...|++++|...+.++++.. +.+..+|+.+..+|.+.|+ +++|...|+++.+ .+...|+.+...+.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 44445555555666666666666666554 4456666666666666775 7777777776653 35667777777888
Q ss_pred hcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHH-cCCHH
Q 046803 285 MHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGR-AGLLN 361 (580)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~~ 361 (580)
..|++++|+..|+++++. .| +...|..+..++...|++++|...|+++.+. .| +...|+.+..+|.+ .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 888888888888888874 33 4567777888888888888888888888753 34 57778888888888 56657
Q ss_pred HH-----HHHHHhHcCCCCC-HHHHHHHHHHHHhcC--CchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC--------
Q 046803 362 EA-----YKFVKDVIGEKPA-PAVWTAMLGACKMHK--NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG-------- 425 (580)
Q Consensus 362 ~A-----~~~~~~~~~~~p~-~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-------- 425 (580)
+| ++.|++++...|+ ...|..+...+...| ++++|+..++++ +.+|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 5888888888884 788999999999888 699999999998 889999999999999999875
Q ss_pred -ChhHHHHHHHHH-HhC
Q 046803 426 -RMDRVEVVRNIM-IQK 440 (580)
Q Consensus 426 -~~~~a~~~~~~m-~~~ 440 (580)
..++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 358999999998 553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=136.13 Aligned_cols=246 Identities=10% Similarity=0.055 Sum_probs=202.6
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCcHHHhhHHhh
Q 046803 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD-IDLGRWVHEFIVGQGLDVNVVLATSLIN 250 (580)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 250 (580)
...|+.+...+.+.|++++|++.|++.++.. +-+...|..+..++...|+ +++|...+.++++.. +.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4578888889999999999999999998752 2345678888888999996 999999999999886 667889999999
Q ss_pred HhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 046803 251 MYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH-AGLVQE 326 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~-~g~~~~ 326 (580)
+|.+.|++++|...|+++.+ .+..+|..+..++.+.|++++|+..|+++++.... +...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998874 56789999999999999999999999999985322 56788888888888 566577
Q ss_pred H-----HHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC------
Q 046803 327 G-----HRVFASMRQEYGLLP-GVEHHVCMVDLFGRAG--LLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK------ 391 (580)
Q Consensus 327 a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g------ 391 (580)
| ...|++..+ +.| +...|..+..+|...| ++++|++.+++. ...|+ ...+..++..|...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 7 477888775 345 4778888899999888 689999999666 77775 778889999998874
Q ss_pred --C-chHHHHHHHHH-HhcCCCCcchHHHHHHHHHhc
Q 046803 392 --N-FDLGVEVAEHL-LSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 392 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~~ 424 (580)
+ .++|+.+++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999888888887766543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-13 Score=123.07 Aligned_cols=206 Identities=12% Similarity=-0.059 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHh
Q 046803 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGM 285 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 285 (580)
.+..+...+...|++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+..+|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33344444444444444444444444432 23344455555555555555555555555432 345566677777777
Q ss_pred c-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046803 286 H-GYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 286 ~-g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 363 (580)
. |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++.+.+. .+.+...+..+...+.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 7 777888888877776333344 356677777888888888888888887753 223467788888888899999999
Q ss_pred HHHHHhHcCCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 364 YKFVKDVIGEKP--APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 364 ~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
.+.+++.+...| +...+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999977776555 466777777788889999999999999988888877665444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-14 Score=129.88 Aligned_cols=199 Identities=8% Similarity=0.063 Sum_probs=158.7
Q ss_pred CcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 240 VNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 240 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677788889999999999999998864 467789999999999999999999999998853 235678888899
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 395 (580)
.+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|.+.+++.+...| +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999864 234677888999999999999999999988887777 58889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
|+..++++++..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999997743
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=139.70 Aligned_cols=267 Identities=13% Similarity=0.063 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CcH
Q 046803 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD----STTCVCVLAACAQLGDIDLGRWVHEFIVGQ----GLD-VNV 242 (580)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 242 (580)
...+......+...|++++|+..|++..+.+ +.+ ...+..+...+...|++++|...+.++.+. +.+ ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445555666666677777777776666542 112 234555666666667777776666665432 111 124
Q ss_pred HHhhHHhhHhhhcCCHHHHHHHHHhccC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHH
Q 046803 243 VLATSLINMYARCGNVSKAREIFDMMSE-----LN----VIAWTAMISGYGMHGY--------------------GTEAV 293 (580)
Q Consensus 243 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 293 (580)
.++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4566677777777777777777766543 22 3367777777777787 78888
Q ss_pred HHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 046803 294 ELFHRMRAH----GVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 294 ~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 364 (580)
..+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 777765531 11122 235667777888888888888888887643222222 346777888888999999999
Q ss_pred HHHHhHcCCCC---C----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHH
Q 046803 365 KFVKDVIGEKP---A----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN------PGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 365 ~~~~~~~~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~ 431 (580)
+.+++.+...| + ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88877663221 2 4567788888899999999999999888765332 457778899999999999999
Q ss_pred HHHHHHHh
Q 046803 432 VVRNIMIQ 439 (580)
Q Consensus 432 ~~~~~m~~ 439 (580)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-14 Score=142.57 Aligned_cols=261 Identities=13% Similarity=0.026 Sum_probs=160.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCC-h----hHHHHHHHHHHhCCChHHHHHHHHHHHHc----C-CCCcHHHhhH
Q 046803 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPD-S----TTCVCVLAACAQLGDIDLGRWVHEFIVGQ----G-LDVNVVLATS 247 (580)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 247 (580)
+...+...|++++|+..|++..+. .|+ . ..+..+...+...|++++|...+.+..+. + .+....++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 344445555555555555555443 122 1 23444445555555555555555544432 1 1122344555
Q ss_pred HhhHhhhcCCHHHHHHHHHhccC---------CChHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHh
Q 046803 248 LINMYARCGNVSKAREIFDMMSE---------LNVIAWTAMISGYGMHGY-----------------GTEAVELFHRMRA 301 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 301 (580)
+...|...|++++|.+.|++..+ ....+|..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 56666666666666666655432 113356666666666777 6777776666543
Q ss_pred C----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhHcC
Q 046803 302 H----GVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 302 ~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 372 (580)
. +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 11111 235666777777888888888888777643211112 23667788888888888888888876663
Q ss_pred CCC---C----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 373 EKP---A----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN------PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 373 ~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..| + ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 222 1 4567788888888899999999888888764332 34778889999999999999999888765
Q ss_pred C
Q 046803 440 K 440 (580)
Q Consensus 440 ~ 440 (580)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=9e-14 Score=136.05 Aligned_cols=265 Identities=13% Similarity=0.053 Sum_probs=185.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CC-CCcHH
Q 046803 174 AWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD-----STTCVCVLAACAQLGDIDLGRWVHEFIVGQ----GL-DVNVV 243 (580)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 243 (580)
.+......+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...+....+. +. +....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34445556667777777777777776642 32 245566666677777777777777665532 11 12245
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSE-----LN----VIAWTAMISGYGMHGY--------------------GTEAVE 294 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 294 (580)
++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 667777777888888888877776543 22 3367777778888888 888888
Q ss_pred HHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 046803 295 LFHRMRAH----GVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAGLLNEAYK 365 (580)
Q Consensus 295 ~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 365 (580)
.+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776531 11121 236677777888899999999998887643211122 3477788889999999999999
Q ss_pred HHHhHcCCC---CC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHH
Q 046803 366 FVKDVIGEK---PA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN------PGHYVMLSNIYALAGRMDRVEV 432 (580)
Q Consensus 366 ~~~~~~~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~ 432 (580)
.+++.+... ++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 997776322 12 5567888899999999999999999988765432 3477889999999999999999
Q ss_pred HHHHHHhC
Q 046803 433 VRNIMIQK 440 (580)
Q Consensus 433 ~~~~m~~~ 440 (580)
.+++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-12 Score=122.23 Aligned_cols=224 Identities=11% Similarity=-0.015 Sum_probs=197.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh----cCCHHHHHHHHHhccC-CChHHHHHHH
Q 046803 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR----CGNVSKAREIFDMMSE-LNVIAWTAMI 280 (580)
Q Consensus 206 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 280 (580)
+..++..+...+...|++++|...+....+. .+...+..+..+|.. .|++++|.+.|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5567788888999999999999999999984 356778889999999 9999999999998765 4678899999
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 281 SGYGM----HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAH----AGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 281 ~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999865 67788888889999 99999999999999863 3 5667778889
Q ss_pred HHHH----cCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh-
Q 046803 353 LFGR----AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM----HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL- 423 (580)
Q Consensus 353 ~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~- 423 (580)
.|.. .+++++|.+.|++.+... ++..+..+...+.. .+++++|+..++++.+.+| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 9988 999999999998877553 57788889999999 9999999999999999876 6789999999999
Q ss_pred ---cCChhHHHHHHHHHHhCCC
Q 046803 424 ---AGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 424 ---~g~~~~a~~~~~~m~~~~~ 442 (580)
.+++++|.+.+++..+.|.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=131.62 Aligned_cols=219 Identities=9% Similarity=-0.093 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh
Q 046803 173 VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMY 252 (580)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 252 (580)
.+|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+..+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence 345555555555555555555555555432 2234555555555666666666666666655543 33455666666666
Q ss_pred hhcCCHHHHHHHHHhccC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 253 ARCGNVSKAREIFDMMSE--LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
.+.|++++|.+.|+++.+ |+...+...+..+...|++++|+..+++..... +++...+ .++..+...++.++|...
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHH
Confidence 666666666666666543 333333333334455677788888887766542 2333333 355666677777778777
Q ss_pred HHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 046803 331 FASMRQEYGLLPG-----VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVA 400 (580)
Q Consensus 331 ~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 400 (580)
+....+ ..|+ ...+..+...|.+.|++++|.+.|++++...|+. +.....++...|++++|+..+
T Consensus 200 ~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 776642 2232 4677778888888888888888888888777742 222344566677777777665
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-13 Score=138.43 Aligned_cols=343 Identities=10% Similarity=-0.001 Sum_probs=217.0
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCh---HHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 046803 77 LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSIL---NLGRAVHCHVFVSGYDSDLHVQAALVNFYAK 153 (580)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 153 (580)
+...+.+.|++++|+++|++..+.|. ...+..+-..+...|+. ++|...|.++.+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 55667778889999999988877663 23333444444556666 7888888888754 44555566664555
Q ss_pred CC-----CHHHHHHHHccCCCC-ChhHHHHHHHHHHhCCChhH---HHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChH
Q 046803 154 SN-----NVDVARKVFDRMPDK-SVVAWNSMISGYEQNGFAKE---AIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224 (580)
Q Consensus 154 ~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 224 (580)
.+ ++++|...|++..++ +..++..|...|...+..++ +.+.+......| +......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 54 778888888776553 45577888888877765443 444555544444 3456666677777777555
Q ss_pred HHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcC---CHHHHHHHHHhccC---CChHHHHHHHHHHHhc----CChHHHHH
Q 046803 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCG---NVSKAREIFDMMSE---LNVIAWTAMISGYGMH----GYGTEAVE 294 (580)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~ 294 (580)
++......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 55444333333222333447788888888888 88888888887654 3444446677776544 68889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHH
Q 046803 295 LFHRMRAHGVRPNNVTFVAVLSA-C--AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG-----LLNEAYKF 366 (580)
Q Consensus 295 ~~~~m~~~g~~pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 366 (580)
+|++.. .| +...+..+... + ...++.++|..+|++..+. | +...+..|..+|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 998876 32 44555555555 3 4578899999999888642 3 5666677777776 55 88999999
Q ss_pred HHhHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHH
Q 046803 367 VKDVIGEKPAPAVWTAMLGACKM----HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL----AGRMDRVEVVRNIMI 438 (580)
Q Consensus 367 ~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~ 438 (580)
|+++. ..++..+..|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. ..+.++|...++...
T Consensus 310 ~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 310 FEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 97776 4467777778777766 348888999998887744 46788888888875 458888888888888
Q ss_pred hCCC
Q 046803 439 QKGL 442 (580)
Q Consensus 439 ~~~~ 442 (580)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 7764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-13 Score=117.98 Aligned_cols=166 Identities=12% Similarity=0.057 Sum_probs=133.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 046803 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCM 350 (580)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 350 (580)
+...|..+...|.+.|++++|+..|++..+. .| +..++..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567777888888888888888888888774 34 4467777778888888888888888887653 22346667777
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 429 (580)
...+...+++++|.+.+.+.+...| +...+..+...+...|++++|+..++++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 7888888888888888877777777 477888888888889999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHhCC
Q 046803 430 VEVVRNIMIQKG 441 (580)
Q Consensus 430 a~~~~~~m~~~~ 441 (580)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999988887643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=139.78 Aligned_cols=294 Identities=12% Similarity=0.004 Sum_probs=184.0
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhCCCHHHHHHHHccCCC-----C----C
Q 046803 104 PSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSD---LHVQAALVNFYAKSNNVDVARKVFDRMPD-----K----S 171 (580)
Q Consensus 104 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~----~ 171 (580)
+....+......+...|++++|...++.+++...... ..++..+...|...|++++|...|++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444455556667777888888888888877643211 24566666777777777777776665421 1 1
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhh
Q 046803 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDFGV-NPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLIN 250 (580)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 250 (580)
..+|..+...|...|++++|+..|++..+... .++. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHH
Confidence 33555566666666666666666665543200 0010 001223444444
Q ss_pred HhhhcCC--------------------HHHHHHHHHhccC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 251 MYARCGN--------------------VSKAREIFDMMSE-----L----NVIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 251 ~y~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
.|...|+ +++|.+.|.+..+ . ...+|..+...|...|++++|+..+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444454 5555555444321 1 123566677777777888888877777664
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhHcC
Q 046803 302 HGV-RPN----NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAGLLNEAYKFVKDVIG 372 (580)
Q Consensus 302 ~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 372 (580)
... .++ ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 112 236677777888888888888888877643211111 55677888889999999999999977763
Q ss_pred C---CCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCChh
Q 046803 373 E---KPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE------PENPGHYVMLSNIYALAGRMD 428 (580)
Q Consensus 373 ~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~ 428 (580)
. .++ ..++..+...+...|++++|...+++++++. +....++..++.+|...|+..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 2 122 5568888899999999999999999988753 223456778888888888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=142.27 Aligned_cols=208 Identities=12% Similarity=0.049 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCH-HHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV-SKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRM 299 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (580)
+++.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444454444332 34566667777777777777 777777776653 34667888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 046803 300 RAHGVRPNNVTFVAVLSACAHA---------GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA--------GLLNE 362 (580)
Q Consensus 300 ~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 362 (580)
.+. .|+...+..+..++... |++++|...|+++.+. .+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 874 57777788888888888 9999999999998753 223577888899999888 99999
Q ss_pred HHHHHHhHcCCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 046803 363 AYKFVKDVIGEKP----APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNI 436 (580)
Q Consensus 363 A~~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 436 (580)
|++.|++++...| +...|..+..+|...|++++|+..|+++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998888777 5888999999999999999999999999999999999999999999999999999876543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=137.21 Aligned_cols=235 Identities=11% Similarity=0.025 Sum_probs=147.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc----C-CCCcHHH
Q 046803 175 WNSMISGYEQNGFAKEAIGLFNLMRDF----GVNP-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ----G-LDVNVVL 244 (580)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 244 (580)
|..+...|...|++++|+..|++..+. +-.| ....+..+...+...|++++|...+.++.+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444444444444444444443321 1011 1224444445555555555555555544432 1 1122345
Q ss_pred hhHHhhHhhhcCC-----------------HHHHHHHHHhccC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 046803 245 ATSLINMYARCGN-----------------VSKAREIFDMMSE-----L----NVIAWTAMISGYGMHGYGTEAVELFHR 298 (580)
Q Consensus 245 ~~~li~~y~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 298 (580)
+..+...|...|+ +++|.+.|++..+ . ...+|..+...|...|++++|+..|++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5566666666666 6666666655432 1 234677778888888888888888887
Q ss_pred HHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 046803 299 MRAHGV-RPN----NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP----GVEHHVCMVDLFGRAGLLNEAYKFVKD 369 (580)
Q Consensus 299 m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~ 369 (580)
..+... .++ ..++..+...+...|++++|...+++......-.. ....+..+...|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 765211 112 23677778888899999999998888765321111 156777888999999999999999987
Q ss_pred HcCCCC---C----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 370 VIGEKP---A----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 370 ~~~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
.+...+ + ..++..+...+...|++++|...+++++++.+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 763321 1 456888899999999999999999999987653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=115.26 Aligned_cols=169 Identities=12% Similarity=0.032 Sum_probs=140.8
Q ss_pred CcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 240 VNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 240 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3567788888888888899999888888764 456788888899999999999999999888743 224556667777
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 395 (580)
.+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++.+...| ++.+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999988753 233577888899999999999999999988888888 48889999999999999999
Q ss_pred HHHHHHHHHhcCCCCc
Q 046803 396 GVEVAEHLLSVEPENP 411 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~ 411 (580)
|+..|+++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-11 Score=116.49 Aligned_cols=220 Identities=11% Similarity=0.059 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHH-------hCCCh-------HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh
Q 046803 189 KEAIGLFNLMRDFGVNPDSTTCVCVLAACA-------QLGDI-------DLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254 (580)
Q Consensus 189 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 254 (580)
++|+.+|++..... +-+...|...+..+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777642 334456666665554 34665 7888888888873124466678888888888
Q ss_pred cCCHHHHHHHHHhccC--C-ChH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 046803 255 CGNVSKAREIFDMMSE--L-NVI-AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA-HAGLVQEGHR 329 (580)
Q Consensus 255 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~ 329 (580)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887764 3 233 788888888888888888888888887432 23344443333322 3688888888
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC---CC--CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE---KP--APAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
+|+...+.. +.+...|..++..+.+.|++++|..+|++++.. .| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887643 235777888888888888888888888877753 44 36678888888888888888888888888
Q ss_pred hcCCCCcc
Q 046803 405 SVEPENPG 412 (580)
Q Consensus 405 ~~~p~~~~ 412 (580)
+..|+++.
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88887553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-12 Score=126.77 Aligned_cols=135 Identities=11% Similarity=0.026 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGV-RPN----NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VE 345 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 345 (580)
++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 344445555555555555555555443100 011 124555555666666666666666655432111111 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCC---C----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKP---A----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
.+..+...|...|++++|.+.+++++...| + ..++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 566677777777777777777766552211 1 345667777788888888888888887776543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-13 Score=129.41 Aligned_cols=237 Identities=11% Similarity=0.093 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc------C-
Q 046803 172 VVAWNSMISGYEQNGFAKEAIGLFNLMRDF-------GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ------G- 237 (580)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~- 237 (580)
..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888888888888888888887652 11223345666666677777777777777666543 1
Q ss_pred CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHH
Q 046803 238 LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH------GVRPN-NVT 310 (580)
Q Consensus 238 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t 310 (580)
.+....++..+...|...|++++|.+.|++ ..+. +-.|+ ...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------------------a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKR-------------------------------ALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-------------------------------HHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHH-------------------------------HHHHHHHhcCCCChHHHHH
Confidence 112234445555555555555555555544 3321 11111 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC---------CC
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEY-----GLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE---------KP 375 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~p 375 (580)
+..+...+...|++++|..+++.+.+.. +..| ....+..+...|.+.|++++|.+.+++++.. .+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4445555555556666555555554321 1112 2344555666666666666666666554421 11
Q ss_pred C-------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 376 A-------PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 376 ~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
. ...+..+...+...+.+.++...+++.....|.++.++..++.+|.+.|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 122333344455566777777788888777777788888888888888888888888887764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-10 Score=119.28 Aligned_cols=401 Identities=9% Similarity=-0.009 Sum_probs=180.4
Q ss_pred CChhhhchHHHHHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCC---ccHHHHHHHHHHHCC-CCCChhhHH
Q 046803 38 RSRSMLTKLLSLVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANF---STDSLLFYRRMIVSN-ISPSNYTFS 110 (580)
Q Consensus 38 ~~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~~t~~ 110 (580)
.|...|..++..+-+.+.++.|+.+|+++.. .....|..-+..-.+.|. ++.+.++|++.+... ..|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 3566666666666566666667766665542 344456666666666666 667777777666542 125555555
Q ss_pred HHHHHHHccCCh--------HHHHHHHHHHHHh-CC-CCc-hHHHHHHHHHHHh---------CCCHHHHHHHHccCCC-
Q 046803 111 AVIKSCAHLSIL--------NLGRAVHCHVFVS-GY-DSD-LHVQAALVNFYAK---------SNNVDVARKVFDRMPD- 169 (580)
Q Consensus 111 ~ll~a~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g~~~~A~~~f~~~~~- 169 (580)
.-+.-....++. +..+++|+.++.. |. .++ ..+|...+..... .++++.++++|++...
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 544433333332 2334566555442 44 332 3466666654432 2345666666666543
Q ss_pred C--Ch-hHHH---HHHHHH----------HhCCChhHHHHHHHHHHH--CCCC---------------C-----C---hh
Q 046803 170 K--SV-VAWN---SMISGY----------EQNGFAKEAIGLFNLMRD--FGVN---------------P-----D---ST 208 (580)
Q Consensus 170 ~--~~-~~~~---~li~~~----------~~~g~~~~A~~~~~~m~~--~g~~---------------p-----~---~~ 208 (580)
| +. ..|. .+.... -...+++.|...+.++.. .++. | + ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 1 11 1221 111110 000112223333333211 0110 0 0 01
Q ss_pred HHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHH-HHHHhccC---CChHHHH
Q 046803 209 TCVCVLAACAQLG-------DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAR-EIFDMMSE---LNVIAWT 277 (580)
Q Consensus 209 t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~~~~ 277 (580)
.|...+.---..+ ..+.+..+|++++... +.+..+|-..+..+...|+.++|. ++|++... .+...|-
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl 382 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAF 382 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2333222221111 0122344455555442 334555555555555555555553 55554432 2333444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 046803 278 AMISGYGMHGYGTEAVELFHRMRAHGV---------RPN------------NVTFVAVLSACAHAGLVQEGHRVFASMRQ 336 (580)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~g~---------~pd------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 336 (580)
..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|..+.|+.+|..+.+
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555555543210 021 12344444444455555555555555543
Q ss_pred hcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC---Cc
Q 046803 337 EYGLLPGVEHHVCMVDLFGRAG-LLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE---NP 411 (580)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~ 411 (580)
.. ..+....|...+.+-.+.+ +.+.|..+|+..+..-| +...|...+......|+.+.|..+|+++++..|+ ..
T Consensus 463 ~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 463 LK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp TG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred hc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 20 0011222222222222322 35555555555553333 2444445555555555555555555555554442 22
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 412 GHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 412 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444445555555555555555543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=120.33 Aligned_cols=213 Identities=11% Similarity=0.046 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhh-------hcCCH-------HHHHHHHHhccC---C-ChHHHHHHHHHHHh
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYA-------RCGNV-------SKAREIFDMMSE---L-NVIAWTAMISGYGM 285 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 285 (580)
++|..+|+++++.. +.+..+|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888898888864 677888888888776 35885 999999998765 3 45689999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH-H-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH-HcCCHHH
Q 046803 286 HGYGTEAVELFHRMRAHGVRPNN-V-TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG-RAGLLNE 362 (580)
Q Consensus 286 ~g~~~~A~~~~~~m~~~g~~pd~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 362 (580)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 45653 3 7888999999999999999999999752 2234555654444432 3699999
Q ss_pred HHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 363 AYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSV---EPE-NPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 363 A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
|.++|++++...| ++..|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998887777 4888999999999999999999999999986 443 5668888999999999999999999999
Q ss_pred HhCC
Q 046803 438 IQKG 441 (580)
Q Consensus 438 ~~~~ 441 (580)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-12 Score=136.78 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCM 350 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 350 (580)
..+|+.|...|.+.|++++|++.|++.++. .|+ ...+..+..+|.+.|++++|.+.|++..+. .| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 456777777777777777777777777763 444 456777777777888888888888777642 35 36777778
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 429 (580)
..+|.+.|++++|++.|++++...|+ ...|..+..++...|++++|+..|+++++++|+++.++..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888777777774 77788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 046803 430 VEVVRNIMIQ 439 (580)
Q Consensus 430 a~~~~~~m~~ 439 (580)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.5e-12 Score=125.52 Aligned_cols=196 Identities=7% Similarity=0.000 Sum_probs=114.3
Q ss_pred HHhhHHhhHhhhcCCHHHHHHHHHhccC-----C-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH---
Q 046803 243 VLATSLINMYARCGNVSKAREIFDMMSE-----L-----NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV-RPNN--- 308 (580)
Q Consensus 243 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~--- 308 (580)
.++..+...|...|++++|...+.+..+ + ...+++.+...|...|++++|+..|++..+... .++.
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3444455555555555555555544331 1 123555666666666666666666666553210 0111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC-----CCC-H
Q 046803 309 -VTFVAVLSACAHAGLVQEGHRVFASMRQEY---GLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE-----KPA-P 377 (580)
Q Consensus 309 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p~-~ 377 (580)
.++..+...|...|++++|...|++..+-. +..| ....+..+...|.+.|++++|.+.+++++.. .|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 356666667777777777777777665411 2212 3556667777777777777777777666532 121 2
Q ss_pred HHHHHHHHHHHhcCC---chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 378 AVWTAMLGACKMHKN---FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..+..+...+...|+ +++|+..+++. ...|.....+..|+.+|...|++++|.+.+++..+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 224556666777777 56666666555 22233345677788888888888888888887654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=126.47 Aligned_cols=245 Identities=12% Similarity=0.080 Sum_probs=149.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHccCCC--------C---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHC------C
Q 046803 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPD--------K---SVVAWNSMISGYEQNGFAKEAIGLFNLMRDF------G 202 (580)
Q Consensus 140 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 202 (580)
+..++..+...|...|++++|...|+++.+ . ...+|..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999988754 1 2457889999999999999999999998764 2
Q ss_pred CCC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc------CC-CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChH
Q 046803 203 VNP-DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ------GL-DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVI 274 (580)
Q Consensus 203 ~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 274 (580)
-.| ...++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|.+.|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 182 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI--- 182 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 223 3457888899999999999999999988764 21 223344555666666666666666665544320
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc------CCCC-----
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEY------GLLP----- 342 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p----- 342 (580)
+++... +..|+ ..++..+...+...|++++|...++++.+.. ...+
T Consensus 183 ---------------------~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 183 ---------------------YQTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp ---------------------HHHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred ---------------------HHHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 000000 01111 1233444444445555555555554444210 0011
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 343 --GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 343 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
....+..+...+...+.+.+|...+++.....|+ ..+|..+..+|...|++++|...+++++++.|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1112222334444556666667777555555553 677888999999999999999999999887664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=123.78 Aligned_cols=229 Identities=8% Similarity=-0.071 Sum_probs=162.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCC-CCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcC--C----CCcHHHhh
Q 046803 178 MISGYEQNGFAKEAIGLFNLMRDFG-VNPD----STTCVCVLAACAQLGDIDLGRWVHEFIVGQG--L----DVNVVLAT 246 (580)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 246 (580)
....+...|++++|+..|++..+.- -.+| ..++..+...+...|+++.|...+.+..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4455666777777777777765430 0122 2456666777777777777777777666431 1 11235677
Q ss_pred HHhhHhhhcCCHHHHHHHHHhccC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHH
Q 046803 247 SLINMYARCGNVSKAREIFDMMSE-----LN----VIAWTAMISGYGMHGYGTEAVELFHRMRAH----GVRP-NNVTFV 312 (580)
Q Consensus 247 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~ 312 (580)
.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 778888888888888888877653 22 247888888999999999999999888762 2323 346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcC---CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhHcCCCCC-HHHHHHHHH
Q 046803 313 AVLSACAHAGLVQEGHRVFASMRQEYG---LLPGVEHHVCMVDLFGRAGL---LNEAYKFVKDVIGEKPA-PAVWTAMLG 385 (580)
Q Consensus 313 ~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~ll~ 385 (580)
.+...+...|++++|...+++..+... .+.....+..+...|...|+ +++|+.++ +..+..|+ ...+..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL-ESKMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHCcCHHHHHHHHHHHHH
Confidence 888899999999999999988765321 11123345678888889999 89999999 44444443 556788999
Q ss_pred HHHhcCCchHHHHHHHHHHhcC
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
.|...|++++|...+++++++.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-11 Score=113.07 Aligned_cols=191 Identities=10% Similarity=-0.064 Sum_probs=109.5
Q ss_pred cHHHhhHHhhHhhhcCCHHHHHHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 046803 241 NVVLATSLINMYARCGNVSKAREIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVL 315 (580)
Q Consensus 241 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll 315 (580)
++..+..+...|.+.|++++|.+.|++..+ ++...|..+...+...|++++|+..|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 445566666666666666666666665542 45555555666666666666666666666653 333 34555566
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---HHHHHHHHHHH
Q 046803 316 SACAHAGLVQEGHRVFASMRQEYGLLPGV-----EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---PAVWTAMLGAC 387 (580)
Q Consensus 316 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~ll~~~ 387 (580)
.++...|++++|...|++..+...-.+.. ..|..+...+...|++++|++.|++++...|+ ...|..+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 66666666666666666665432111111 34555666666666666666666666666664 34455555555
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.. .+...++++..+.+.++..|..+ .....+.+++|...+++..+.
T Consensus 164 ~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 33 23344555555555544333322 233445568888888888764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-10 Score=112.67 Aligned_cols=262 Identities=11% Similarity=-0.020 Sum_probs=168.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChh----HHHHHHHHHHhCCChHHHHHHHHHHHHcC--C-CC--cHHHhhHH
Q 046803 178 MISGYEQNGFAKEAIGLFNLMRDFGVNPDST----TCVCVLAACAQLGDIDLGRWVHEFIVGQG--L-DV--NVVLATSL 248 (580)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l 248 (580)
....+...|++++|...+++.....-..+.. .+..+...+...|++++|...+.+..+.. . .+ ...+.+.+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777777776665542111111 34444555666677777777766665421 0 11 12234566
Q ss_pred hhHhhhcCCHHHHHHHHHhccC----------C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHHHHHH
Q 046803 249 INMYARCGNVSKAREIFDMMSE----------L-NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR--P--NNVTFVA 313 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--d~~t~~~ 313 (580)
...|...|++++|.+.+++..+ + ....+..+...+...|++++|...+++....... | ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6777777888888777776542 1 1235566777788888888888888887653211 1 1245667
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHhHcCCCCC-----HHHHHHH
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHV-----CMVDLFGRAGLLNEAYKFVKDVIGEKPA-----PAVWTAM 383 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l 383 (580)
+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.....|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77788888999999988888764322111111111 2334577889999999999777654442 3356677
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 384 LGACKMHKNFDLGVEVAEHLLSVEPEN------PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 384 l~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
...+...|++++|...++++++..+.. ...+..++.+|...|+.++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888889999999999999887654221 13667788899999999999999888765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-11 Score=107.51 Aligned_cols=163 Identities=13% Similarity=0.052 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 354 (580)
.|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34444555555555555555555554421 123445555555666666666666666665542 122455566666666
Q ss_pred HHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 046803 355 GRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVV 433 (580)
Q Consensus 355 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 433 (580)
...|++++|.+.+++.+...| +...+..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666777777776665554444 3566666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhC
Q 046803 434 RNIMIQK 440 (580)
Q Consensus 434 ~~~m~~~ 440 (580)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7766543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-11 Score=125.43 Aligned_cols=179 Identities=9% Similarity=-0.005 Sum_probs=159.5
Q ss_pred HHHHHHHHHhccC---CChHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 046803 258 VSKAREIFDMMSE---LNVIAWTAMISGYGMHGYG-TEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFA 332 (580)
Q Consensus 258 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 332 (580)
++++...++.... .+...|..+...|...|++ ++|+..|++..+. .|+ ...+..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666665543 4678899999999999999 9999999999885 444 6788999999999999999999999
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhc--------CCch
Q 046803 333 SMRQEYGLLPGVEHHVCMVDLFGRA---------GLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMH--------KNFD 394 (580)
Q Consensus 333 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~--------g~~~ 394 (580)
++. .+.|+...+..+..+|... |++++|++.+++++...|+ ...|..+..+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 997 4568888899999999999 9999999999999988884 88999999999999 9999
Q ss_pred HHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 395 LGVEVAEHLLSVEP---ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 395 ~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
+|+..|+++++++| .++..|..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 999999999999999999999999999987743
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.36 E-value=7.2e-10 Score=117.66 Aligned_cols=400 Identities=10% Similarity=0.009 Sum_probs=275.4
Q ss_pred CHHHHHHHHhcC---CCCchHHHHHHHHHHhCCCCChhhhchHHHHHhccCC---hhHHHHHHccCCC-----CChhhHH
Q 046803 7 HSPAYEAILKAG---PRLKPLQQVHAHLIVAGYGRSRSMLTKLLSLVCDAGF---ITYAQRIFFCIPS-----PDSFLFN 75 (580)
Q Consensus 7 ~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~---~~~A~~~f~~~~~-----~~~~~~~ 75 (580)
|..++..++..+ +....++.++..+++. +..+...|...+..-.+.++ ++.+.++|++... |++..|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 445566666554 4567789999998876 45567788888877777778 9999999987542 7888898
Q ss_pred HHHHHHHcCCCc--------cHHHHHHHHHHH-CCC-CCCh-hhHHHHHHHHH---------ccCChHHHHHHHHHHHHh
Q 046803 76 TLIIRNSKANFS--------TDSLLFYRRMIV-SNI-SPSN-YTFSAVIKSCA---------HLSILNLGRAVHCHVFVS 135 (580)
Q Consensus 76 ~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~ 135 (580)
.-+.-..+.++. +...++|+..+. .|. .|+. ..|...+.... ..++++.++.+|..++..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 887766555543 234477877654 466 6654 45555554432 234567789999998864
Q ss_pred CCCCchHHHHHHHHHHHhC-------------CCHHHHHHHHcc-------CCC--CC--------------------hh
Q 046803 136 GYDSDLHVQAALVNFYAKS-------------NNVDVARKVFDR-------MPD--KS--------------------VV 173 (580)
Q Consensus 136 g~~~~~~~~~~li~~y~~~-------------g~~~~A~~~f~~-------~~~--~~--------------------~~ 173 (580)
....-..+|......-... .+++.|...+.+ +.. |. ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 3333344554443322111 123344455543 211 00 13
Q ss_pred HHHHHHHHHHhCC-------ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHH-HHHHHHHHcCCCCcHHHh
Q 046803 174 AWNSMISGYEQNG-------FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGR-WVHEFIVGQGLDVNVVLA 245 (580)
Q Consensus 174 ~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~ 245 (580)
.|...+.---.++ ..+.+..+|++.... .+-+...|...+..+...|+.+.|. .+++..+... |.+...+
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lw 381 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 5666665444433 123456778888765 3446677888888888889998996 9999998753 6677788
Q ss_pred hHHhhHhhhcCCHHHHHHHHHhccC-------------CC------------hHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046803 246 TSLINMYARCGNVSKAREIFDMMSE-------------LN------------VIAWTAMISGYGMHGYGTEAVELFHRMR 300 (580)
Q Consensus 246 ~~li~~y~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 300 (580)
-.++...-+.|+++.|.++|+++.+ |+ ...|...+....+.|..+.|..+|.+..
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999999998763 21 2368888888888899999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---
Q 046803 301 AHGVRPNNVTFVAVLSACAHA-GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA--- 376 (580)
Q Consensus 301 ~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--- 376 (580)
+.-..+....|......-.+. ++.+.|..+|+...+.++ .+...+...++.....|+.+.|..+|++++...|+
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 751112233443333222333 458999999999987643 35666778888888999999999999888876662
Q ss_pred -HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 377 -PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 377 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
...|...+..-..+|+.+.+..+.+++.+..|+++
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 46799999999999999999999999999999864
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.8e-11 Score=109.50 Aligned_cols=205 Identities=10% Similarity=0.047 Sum_probs=161.6
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHH
Q 046803 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMIS 281 (580)
Q Consensus 205 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 281 (580)
.|+..+......+...|++++|...+...++...+++...+..+..+|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466788889999999999999999999999987437777887899999999999999999998874 34668999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---HHHHHHH
Q 046803 282 GYGMHGYGTEAVELFHRMRAHGVRPN-N-------VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG---VEHHVCM 350 (580)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~g~~pd-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 350 (580)
.|...|++++|+..|++..+. .|+ . ..+..+...+...|++++|...|+++.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999984 444 3 3577777888999999999999999873 4565 5677778
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
..+|...|+. .++++....+ +...+..+. ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888766543 3333332222 344444333 34557789999999999999999988777766554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-11 Score=104.67 Aligned_cols=170 Identities=12% Similarity=0.045 Sum_probs=145.7
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSAC 318 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 318 (580)
...+..+...|...|++++|.+.|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45567788889999999999999998875 467788899999999999999999999998752 33567788888899
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
...|++++|.+.++.+.+. .+.+...+..+...+...|++++|.+.+++.+...| +..++..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998864 234677888899999999999999999988887667 4788999999999999999999
Q ss_pred HHHHHHHhcCCCCcchH
Q 046803 398 EVAEHLLSVEPENPGHY 414 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~~ 414 (580)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999988876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.2e-11 Score=118.57 Aligned_cols=222 Identities=5% Similarity=-0.043 Sum_probs=127.4
Q ss_pred HHhCCChHHHHHHHHHHHHcC--CC---CcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-----CC-----hHHHHHHHH
Q 046803 217 CAQLGDIDLGRWVHEFIVGQG--LD---VNVVLATSLINMYARCGNVSKAREIFDMMSE-----LN-----VIAWTAMIS 281 (580)
Q Consensus 217 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 281 (580)
+...|++++|...+.++.+.. .+ ....++..+...|...|+++.|...+.+..+ ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 344555555555555554321 00 1233445555556666666665555554431 11 235566666
Q ss_pred HHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCCHHHHHHHHHH
Q 046803 282 GYGMHGYGTEAVELFHRMRAH----GVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEY---GLLPGVEHHVCMVDL 353 (580)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~ 353 (580)
.|...|++++|++.|++..+. +-.+ ...++..+...|...|++++|...|++..+.. +.+.....+..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 677777777777776665541 1111 12355666667777777777777777765411 111225566677777
Q ss_pred HHHcCCHHHHHHHHHhHcCC-----CCC-HHHHHHHHHHHHhcCC---chHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046803 354 FGRAGLLNEAYKFVKDVIGE-----KPA-PAVWTAMLGACKMHKN---FDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 424 (580)
|.+.|++++|.+.+++++.. .|. ...+..+...+...++ +++|+..+++. ...|.....+..++..|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 77788888888777666522 222 3345555566666666 56666666552 11233345666788888888
Q ss_pred CChhHHHHHHHHHHh
Q 046803 425 GRMDRVEVVRNIMIQ 439 (580)
Q Consensus 425 g~~~~a~~~~~~m~~ 439 (580)
|++++|.+.+++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-09 Score=108.64 Aligned_cols=228 Identities=11% Similarity=0.024 Sum_probs=162.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcC--C---C-CcHHHh
Q 046803 177 SMISGYEQNGFAKEAIGLFNLMRDFGV-NPD----STTCVCVLAACAQLGDIDLGRWVHEFIVGQG--L---D-VNVVLA 245 (580)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~ 245 (580)
.....+...|++++|+..|++..+... .+| ..++..+..++...|+++.|...+.+..+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344456677888888888877765311 122 2356667777778888888887777766431 1 1 124567
Q ss_pred hHHhhHhhhcCCHHHHHHHHHhccC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHH
Q 046803 246 TSLINMYARCGNVSKAREIFDMMSE-----LN----VIAWTAMISGYGMHGYGTEAVELFHRMRA-----HGVRPNNVTF 311 (580)
Q Consensus 246 ~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~ 311 (580)
+.+..+|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 7788888888888888888876653 12 34677888889999999999999988876 32 2235677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCC--C-CHHHHHHHHHHHHHcCC---HHHHHHHHHhHcCCCCC-HHHHHHHH
Q 046803 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLL--P-GVEHHVCMVDLFGRAGL---LNEAYKFVKDVIGEKPA-PAVWTAML 384 (580)
Q Consensus 312 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~ll 384 (580)
..+...+.+.|++++|...+++..+...-. | ....+..+...|...|+ +.+|+..+ +..+..|+ ...+..+.
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~la 343 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF-EKKNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HhCCChhHHHHHHHHHH
Confidence 888889999999999999999887643321 2 24456667777878888 88999988 44444443 45677888
Q ss_pred HHHHhcCCchHHHHHHHHHHhc
Q 046803 385 GACKMHKNFDLGVEVAEHLLSV 406 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~ 406 (580)
..|...|++++|...++++++.
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.8e-11 Score=126.53 Aligned_cols=165 Identities=16% Similarity=0.159 Sum_probs=142.6
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAV 314 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l 314 (580)
|.+...++.|..+|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34567888888889999999999999888764 45778999999999999999999999998884 555 5688899
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCC
Q 046803 315 LSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKN 392 (580)
Q Consensus 315 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~ 392 (580)
..++...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.|++++...|+ ...|..|..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999998753 45 4788999999999999999999999999988885 8889999999999999
Q ss_pred chHHHHHHHHHHhcCC
Q 046803 393 FDLGVEVAEHLLSVEP 408 (580)
Q Consensus 393 ~~~a~~~~~~~~~~~p 408 (580)
+++|.+.+++++++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999999999887543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=110.92 Aligned_cols=186 Identities=10% Similarity=-0.024 Sum_probs=114.9
Q ss_pred hhhcCCHHHHHHHHHhccC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHH
Q 046803 252 YARCGNVSKAREIFDMMSE-----LN----VIAWTAMISGYGMHGYGTEAVELFHRMRAH----GVRP-NNVTFVAVLSA 317 (580)
Q Consensus 252 y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~a 317 (580)
|...|++++|.+.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+. |-.+ -..++..+..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555555555544332 01 335566666666666666666666665541 1000 02356677777
Q ss_pred HHhc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCH--------HHHHHHH
Q 046803 318 CAHA-GLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAP--------AVWTAML 384 (580)
Q Consensus 318 ~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~--------~~~~~ll 384 (580)
|... |++++|...|++..+...-..+ ...+..+...|.+.|++++|++.|++.+...|+. ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8775 8888888888877653211111 3467778888889999999999998777555431 1567777
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--hcCChhHHHHHHHHH
Q 046803 385 GACKMHKNFDLGVEVAEHLLSVEPENPGH-----YVMLSNIYA--LAGRMDRVEVVRNIM 437 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~~m 437 (580)
.++...|++++|+..+++.+++.|..... +..++..|. ..+++++|.+.++.+
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 78888899999999999998888875543 344556664 456677777777544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-10 Score=108.92 Aligned_cols=219 Identities=11% Similarity=-0.002 Sum_probs=132.8
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHHhCCChHHHHHHH
Q 046803 156 NVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDF----GVNPD-STTCVCVLAACAQLGDIDLGRWVH 230 (580)
Q Consensus 156 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~ 230 (580)
++++|...|++. ...|...|++++|++.|.+..+. |-.++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777766553 66677777777777777766542 21111 235555555555555666555555
Q ss_pred HHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCC-C-
Q 046803 231 EFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH-GYGTEAVELFHRMRAHGVRP-N- 307 (580)
Q Consensus 231 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-d- 307 (580)
.+.++. +.+.|+...+ ..+|+.+...|... |++++|+..|++..+..... +
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 554432 1111222111 23566677777775 88888888888776521100 1
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHH-
Q 046803 308 ---NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGV-----EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPA- 378 (580)
Q Consensus 308 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~- 378 (580)
..++..+...+...|++++|...|++..+...-.+.. ..|..+..++...|++++|...|++.+...|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2457777888888888888888888887532111221 2566777888888999999999988887777522
Q ss_pred -----HHHHHHHHHH--hcCCchHHHHHHHHHHhcCCCCc
Q 046803 379 -----VWTAMLGACK--MHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 379 -----~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
.+..++.++. ..+++++|+..|+++..++|.+.
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 2344555554 34668888888887777777543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=6e-09 Score=103.74 Aligned_cols=158 Identities=8% Similarity=-0.108 Sum_probs=81.8
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHCCCCCChh----hHHHHHHHHHccCChHHHHHHHHHHHHhCCC-Cc----hHHHHHH
Q 046803 77 LIIRNSKANFSTDSLLFYRRMIVSNISPSNY----TFSAVIKSCAHLSILNLGRAVHCHVFVSGYD-SD----LHVQAAL 147 (580)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 147 (580)
....+...|++++|...+++........+.. ++..+...+...|++++|...+.+.++.... .+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445667788888888888876653222221 2344445566677787777777776653211 11 1223445
Q ss_pred HHHHHhCCCHHHHHHHHccCCC-------C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--C--ChhHHHH
Q 046803 148 VNFYAKSNNVDVARKVFDRMPD-------K----SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN--P--DSTTCVC 212 (580)
Q Consensus 148 i~~y~~~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 212 (580)
...|...|++++|...|++... + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 5556666666666665554321 1 1123444555555556666666555555432111 0 1123444
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 046803 213 VLAACAQLGDIDLGRWVHEFIV 234 (580)
Q Consensus 213 ll~a~~~~~~~~~a~~~~~~~~ 234 (580)
+...+...|++++|...+....
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-10 Score=108.69 Aligned_cols=222 Identities=11% Similarity=0.108 Sum_probs=160.5
Q ss_pred HhCCChHHHHHHHHHHHHc-------CCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-----------CChHHHHHH
Q 046803 218 AQLGDIDLGRWVHEFIVGQ-------GLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-----------LNVIAWTAM 279 (580)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 279 (580)
...|++++|..++.+.++. ..+....++..+...|...|++++|...|++..+ ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777652 2234567888999999999999999999987652 124578889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCC-CHHH
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAH------GVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEY-----GLLP-GVEH 346 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 346 (580)
...|...|++++|+..|++.... .-.|+ ..++..+...+...|++++|..+++++.+.. +..| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998763 11233 4577888889999999999999999987531 1123 3667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCC---------CCC-HHHHHHHHHHHHhcCCchHHHH------HHHHHHhcCCCC
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGE---------KPA-PAVWTAMLGACKMHKNFDLGVE------VAEHLLSVEPEN 410 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------~p~-~~~~~~ll~~~~~~g~~~~a~~------~~~~~~~~~p~~ 410 (580)
+..+...|.+.|++++|.+.+++.+.. .+. ...|..+.......+....+.. .++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999877632 232 3345444444444443333332 222222233555
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 411 PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 411 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+.++..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67888999999999999999999998865
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.8e-10 Score=104.23 Aligned_cols=188 Identities=12% Similarity=0.033 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN----NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHV 348 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 348 (580)
..+-.+...+.+.|++++|+..|+++.+. .|+ ...+..+..++...|++++|...|+.+.+.+.-.|. ...+.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 33334444444444455555555444442 121 233344444444455555555555544433221121 23333
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHhHcCCCCC-HHH-----------------HHHHHHHHHhcCCchHHHHHHHH
Q 046803 349 CMVDLFGR--------AGLLNEAYKFVKDVIGEKPA-PAV-----------------WTAMLGACKMHKNFDLGVEVAEH 402 (580)
Q Consensus 349 ~li~~~~~--------~g~~~~A~~~~~~~~~~~p~-~~~-----------------~~~ll~~~~~~g~~~~a~~~~~~ 402 (580)
.+..++.. .|++++|+..|++.+...|+ ... +..+...+...|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44444444 55555555555444433332 111 35678889999999999999999
Q ss_pred HHhcCCCCc---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCC
Q 046803 403 LLSVEPENP---GHYVMLSNIYALA----------GRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPN 469 (580)
Q Consensus 403 ~~~~~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 469 (580)
+++..|+++ ..+..++.+|... |++++|...++++.+... .+|.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-----------------------~~~~ 230 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-----------------------DSPL 230 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------------------TCTH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------------------CChH
Confidence 999998854 5788899999877 899999999999877431 3566
Q ss_pred hHHHHHHHHHHHHHHHH
Q 046803 470 TNEIYQYLDELMGRCRE 486 (580)
Q Consensus 470 ~~~~~~~l~~l~~~m~~ 486 (580)
..++...+.++...+.+
T Consensus 231 ~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 231 LRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777777777766654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-10 Score=99.99 Aligned_cols=141 Identities=9% Similarity=0.007 Sum_probs=111.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcC
Q 046803 281 SGYGMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAG 358 (580)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 358 (580)
..+...|++++|+..+++... ..|+. ..+..+...|...|++++|.+.|++..+. .| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 344556677777777777655 23332 34556777888888888888888888753 34 5788888999999999
Q ss_pred CHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHH-HHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 359 LLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEV-AEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
++++|+..|++++...|+ +.+|..+...+...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999888888884 88899999999999999877665 589999999999999999988888775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-09 Score=101.68 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhc----------CCchHHHHHHHHHHhcCCCCcc-
Q 046803 348 VCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMH----------KNFDLGVEVAEHLLSVEPENPG- 412 (580)
Q Consensus 348 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~- 412 (580)
..+...|.+.|++++|+..|++.+...|+ ...+..+..++... |++++|+..++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56788899999999999999888765554 45677888888766 8899999999999999999864
Q ss_pred --hHHHHHHHHHhcCChh
Q 046803 413 --HYVMLSNIYALAGRMD 428 (580)
Q Consensus 413 --~~~~l~~~y~~~g~~~ 428 (580)
+...+..++...++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 3344555555444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.1e-09 Score=95.63 Aligned_cols=181 Identities=10% Similarity=0.002 Sum_probs=110.8
Q ss_pred HHhhHHhhHhhhcCCHHHHHHHHHhccC--CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHH
Q 046803 243 VLATSLINMYARCGNVSKAREIFDMMSE--LN----VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN----VTFV 312 (580)
Q Consensus 243 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~ 312 (580)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444455566667777777777766653 22 235566666677777777777777776653 2222 1222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHH-----------
Q 046803 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVW----------- 380 (580)
Q Consensus 313 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~----------- 380 (580)
.+..++...|.. .+ ..|..+...+...|++++|...|++.+...|+ ...+
T Consensus 83 ~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 333333321100 00 00111122222355666666666666655554 2222
Q ss_pred ------HHHHHHHHhcCCchHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 381 ------TAMLGACKMHKNFDLGVEVAEHLLSVEPENP---GHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 381 ------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
..+...+...|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 3456678899999999999999999999876 56889999999999999999999999886544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-09 Score=101.80 Aligned_cols=198 Identities=9% Similarity=0.010 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHc------CC-CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-------C---
Q 046803 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQ------GL-DVNVVLATSLINMYARCGNVSKAREIFDMMSE-------L--- 271 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--- 271 (580)
++..+...+...|++++|...+..+.+. +- +....++..+...|...|++++|.+.|.+..+ +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 4444455555555555555555544432 11 12234455555566666666666665555432 1
Q ss_pred -ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----
Q 046803 272 -NVIAWTAMISGYGMHGYGTEAVELFHRMRAH------GVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEY----- 338 (580)
Q Consensus 272 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----- 338 (580)
...+|..+...|...|++++|+..|++..+. +-.|+ ..++..+...+...|++++|..+++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 1345666666777777777777777766653 11222 3466677777788888888888887776421
Q ss_pred -CCCCC-HHHHHHHHHHHHHc------CCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 046803 339 -GLLPG-VEHHVCMVDLFGRA------GLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406 (580)
Q Consensus 339 -~~~p~-~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 406 (580)
...+. ...+..+...+... ..+.++...++......|+ ..++..+...|...|++++|...++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 22333333333322 2344555555222233343 566888889999999999999999988764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-08 Score=95.19 Aligned_cols=256 Identities=9% Similarity=0.006 Sum_probs=164.0
Q ss_pred HHhCCCHHHHHHHHccCCCCCh-hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 046803 151 YAKSNNVDVARKVFDRMPDKSV-VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWV 229 (580)
Q Consensus 151 y~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 229 (580)
..-.|.+..++.-...+...+. ..-.-+.++|...|++.... .-.|....+..+... ...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~-~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQF-LDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHH-HTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHH-hccc----HHHH
Confidence 3445777777765555543222 22223446777777765310 112332233333322 2222 5566
Q ss_pred HHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 046803 230 HEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304 (580)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 304 (580)
+++..+.+ +++......+..+|...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66666554 44555556778888888899999888887643 2456777788889999999999999999877 4
Q ss_pred CC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC--
Q 046803 305 RP-----NNVTFVAVLSA--CAHAG--LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE-- 373 (580)
Q Consensus 305 ~p-----d~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 373 (580)
.| +..+...+..+ ....| +.++|..+|+++... .|+......+..++.+.|++++|.+.++.....
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 66 35666666666 33334 889999999998643 354333334444788899999999998544432
Q ss_pred --------CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 374 --------KP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 374 --------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.| |+.+...++......|+ +|.++++++.+..|++|.+. ++.+....|+++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~-----------d~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK-----------HHQEIDAKFDELVR 304 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH-----------HHHHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH-----------HHHHHHHHHHHHHH
Confidence 25 46777677766666776 88999999999999987543 23445555555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-09 Score=88.99 Aligned_cols=126 Identities=15% Similarity=0.218 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc
Q 046803 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH 390 (580)
Q Consensus 312 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~ 390 (580)
..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|.+.+++.+...| +...|..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 34444555555555555555555432 112344555555566666666666666655554444 355566666666666
Q ss_pred CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 391 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
|++++|...++++++..|.++..+..++.+|...|++++|.+.++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777666666666666777777777777777777766654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-08 Score=94.94 Aligned_cols=241 Identities=10% Similarity=0.045 Sum_probs=170.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCH
Q 046803 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258 (580)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 258 (580)
|.-..-.|.+..++.-..++.. ..+.....-+.+++...|.++.. ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 3445567888888874333221 11223444456788888876632 11233333444444333 322
Q ss_pred HHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 259 SKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 259 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
|...|++..+ ++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777877653 556667788899999999999999999987765423 3467778888999999999999999999
Q ss_pred HHhcCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 335 RQEYGLLP-----GVEHHVCMVDL--FGRAG--LLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 335 ~~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
.+. .| +..+...|+.+ ....| ++.+|..+|++.....|+..+-..|+.++.+.|++++|+..++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 753 46 24444555555 33334 99999999988777777744444555589999999999999998887
Q ss_pred c----------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 406 V----------EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 406 ~----------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
. +|+|+.++..++.++...|+ +|.++++++++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6 48899999899888888897 8999999998754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.2e-09 Score=101.57 Aligned_cols=177 Identities=10% Similarity=-0.011 Sum_probs=140.7
Q ss_pred CHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 257 NVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 257 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
..+...+.+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+..++...|++++|...++.+.
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3445555555555555667777888888999999999999998874 44 45677788889999999999999998886
Q ss_pred HhcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC--c
Q 046803 336 QEYGLLPGVEHHV-CMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN--P 411 (580)
Q Consensus 336 ~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~ 411 (580)
.. .|+..... .....+.+.++.++|.+.+++.+...|+ ...+..+...+...|++++|+..++++++.+|++ .
T Consensus 179 ~~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 179 LQ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp GG---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred hh---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 43 35533322 2333466778888899999888888884 8889999999999999999999999999999987 7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 412 GHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 412 ~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
..+..|+.+|...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 889999999999999999998887754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.4e-10 Score=120.45 Aligned_cols=168 Identities=9% Similarity=-0.031 Sum_probs=129.9
Q ss_pred hhcCCHHHHHHHHHhcc-----------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 046803 253 ARCGNVSKAREIFDMMS-----------ELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAH 320 (580)
Q Consensus 253 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~ 320 (580)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 66788888888888765 245567888888888888888888888888774 34 44677777778888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVE 398 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 398 (580)
.|++++|...|+++.+. .| +...+..+..+|.+.|++++ ++.|++++...|+ ...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888753 34 46677788888888888888 8888888777774 7778888888888888888888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 399 VAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 399 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
.|+++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8888888888888888888888876555
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.4e-10 Score=96.00 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=104.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCC
Q 046803 315 LSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKN 392 (580)
Q Consensus 315 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~ 392 (580)
...+...|++++|...++... ...|+ ...+..+...|.+.|++++|++.|++.+...| ++.+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 345556788999999888775 33453 45566789999999999999999999998888 58899999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH-HHHHHh
Q 046803 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVV-RNIMIQ 439 (580)
Q Consensus 393 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~~ 439 (580)
+++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 477765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=7.3e-09 Score=85.73 Aligned_cols=132 Identities=16% Similarity=0.254 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLF 354 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 354 (580)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56777788888888888888888887643 235567777788888888999999988888753 233566777888889
Q ss_pred HHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 355 GRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 355 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
.+.|++++|.+.+++++...| +..++..+...+...|++++|...++++++..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999977776666 4778888889999999999999999999888775
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-09 Score=88.55 Aligned_cols=100 Identities=7% Similarity=0.127 Sum_probs=69.8
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 340 LLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 340 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
+.|+ ...+......|.+.|++++|++.|++++...| ++.+|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3443 44555666677777777777777766666666 366677777777777777777777777777777777777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 046803 418 SNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 418 ~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777777665
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-09 Score=91.18 Aligned_cols=103 Identities=8% Similarity=0.022 Sum_probs=93.8
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHH
Q 046803 339 GLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416 (580)
Q Consensus 339 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 416 (580)
.+.|+ ...+..+...+.+.|++++|++.|++.+...| ++..|..+..++...|++++|+..|+++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45564 66777888999999999999999999888888 58899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 417 LSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 417 l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-08 Score=109.61 Aligned_cols=188 Identities=13% Similarity=0.025 Sum_probs=151.2
Q ss_pred HhCCChHHHHHHHHHHH--------HcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhc
Q 046803 218 AQLGDIDLGRWVHEFIV--------GQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMH 286 (580)
Q Consensus 218 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 286 (580)
...|++++|.+.+++.. +.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999988 443 55678888999999999999999999998874 4678999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 046803 287 GYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAY 364 (580)
Q Consensus 287 g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 364 (580)
|++++|+..|++..+. .| +...+..+..++...|++++ .+.|+++.+. .| +...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999984 45 45778888999999999999 9999998853 35 5778899999999999999999
Q ss_pred HHHHhHcCCCCC-HHHHHHHHHHHHhcCC-----chHHHHHHHHHHhcCCCCcc
Q 046803 365 KFVKDVIGEKPA-PAVWTAMLGACKMHKN-----FDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 365 ~~~~~~~~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 412 (580)
+.|++++...|+ ...|..+..++...++ .+...++.+.+.++.+.++.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999999999997 6778888888776665 23444444445455555444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-08 Score=89.61 Aligned_cols=173 Identities=8% Similarity=-0.016 Sum_probs=132.4
Q ss_pred HHHHHHhccC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhH
Q 046803 261 AREIFDMMSE-LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG----LVQEGHRVFASMR 335 (580)
Q Consensus 261 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 335 (580)
|.+.|++..+ .++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444544432 456677777777777788888888888877754 45566666666666 6 7888888888876
Q ss_pred HhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhHcCCCCC---HHHHHHHHHHHHh----cCCchHHHHHHHHHH
Q 046803 336 QEYGLLPGVEHHVCMVDLFGR----AGLLNEAYKFVKDVIGEKPA---PAVWTAMLGACKM----HKNFDLGVEVAEHLL 404 (580)
Q Consensus 336 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 404 (580)
+. .+...+..|..+|.. .+++++|+++|+++....|. +..+..|...|.. .+++++|+..|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 42 356667778888876 78999999999888877774 7888888888888 789999999999998
Q ss_pred hcCCCCcchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 046803 405 SVEPENPGHYVMLSNIYALA-G-----RMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 405 ~~~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~~~ 442 (580)
+. |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66678899999999764 3 89999999999887653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.5e-09 Score=102.38 Aligned_cols=221 Identities=10% Similarity=-0.024 Sum_probs=147.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHH
Q 046803 185 NGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREI 264 (580)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 264 (580)
.|++++|.+++++..+.. +.. + +...++++.|...|..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456777777777765431 111 0 11135666666665544 3456667777777777
Q ss_pred HHhccC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 046803 265 FDMMSE-----LN----VIAWTAMISGYGMHGYGTEAVELFHRMRAHGV---RPN--NVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 265 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 766543 11 34677788888888888888888887664211 111 2466777778877 999999999
Q ss_pred HHHhHHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC---C----HHHHHHHHHHHHhcCCchHHHHH
Q 046803 331 FASMRQEYGLLP----GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP---A----PAVWTAMLGACKMHKNFDLGVEV 399 (580)
Q Consensus 331 ~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~ 399 (580)
|++..+...-.. ....+..+...|.+.|++++|++.|++++...| + ...+..++..+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 988765321111 146778889999999999999999988774322 2 23566777778888999999999
Q ss_pred HHHHHhcCCCCcch-----HHHHHHHHHhcCChhHHHHH
Q 046803 400 AEHLLSVEPENPGH-----YVMLSNIYALAGRMDRVEVV 433 (580)
Q Consensus 400 ~~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~a~~~ 433 (580)
+++.+ +.|..... ...++..| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88875433 33455555 56776666553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-09 Score=90.79 Aligned_cols=102 Identities=8% Similarity=0.032 Sum_probs=91.3
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHH
Q 046803 339 GLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416 (580)
Q Consensus 339 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 416 (580)
.+.| +...+..+...+.+.|++++|...|++.+...| +...|..+..++...|++++|+..|+++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4445 466777788899999999999999988887778 58889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 046803 417 LSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 417 l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
++.+|...|++++|.+.+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=7.1e-09 Score=109.61 Aligned_cols=160 Identities=11% Similarity=0.025 Sum_probs=127.6
Q ss_pred cCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 255 CGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 255 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999998875 45778999999999999999999999999984 44 467888889999999999999999
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc---CCchHHHHHHHHHHhc
Q 046803 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH---KNFDLGVEVAEHLLSV 406 (580)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 406 (580)
|++..+. .+.+...+..+..+|.+.|++++|.+.+++.+...| +...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999864 223578889999999999999999999998888778 478899999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 046803 407 EPENPGHYVMLS 418 (580)
Q Consensus 407 ~p~~~~~~~~l~ 418 (580)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.5e-09 Score=90.96 Aligned_cols=77 Identities=9% Similarity=0.042 Sum_probs=56.2
Q ss_pred HHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 362 EAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 362 ~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
+|.+.+++.+...|+ ...+..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 356666666666663 6777777777788888888888888888777764 4477778888888888888887777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-07 Score=89.29 Aligned_cols=212 Identities=12% Similarity=0.104 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcC--CHHHHHHHHHhccC---CChHHHHHHHHHH----Hhc---CChHH
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCG--NVSKAREIFDMMSE---LNVIAWTAMISGY----GMH---GYGTE 291 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~ 291 (580)
++|..+.+.++..+ |.+..+|+.--..+...| +++++.+.++.+.. .+..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 45555555555544 334444555555555555 66666666665553 3344555443333 333 56777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC------HHHH
Q 046803 292 AVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ--EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL------LNEA 363 (580)
Q Consensus 292 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A 363 (580)
++.+++++.+...+ |...+..-.-.+.+.|.++ ++.+.++.+.+. -.-+...|+.-..++.+.|+ ++++
T Consensus 129 EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 129 EFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 77777777764322 4556655555666666666 777777777753 12345566555555556665 8889
Q ss_pred HHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchH-HHHHHHHHHhcC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 364 YKFVKDVIGEKP-APAVWTAMLGACKMHKNFDL-GVEVAEHLLSVE---PENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 364 ~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
++.+++++...| |...|+.+...+.+.|+... ...+.+++.+++ |.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999888888788 58889888888888887544 556777777766 7788888899999999999999999999987
Q ss_pred h
Q 046803 439 Q 439 (580)
Q Consensus 439 ~ 439 (580)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-08 Score=106.83 Aligned_cols=153 Identities=10% Similarity=-0.050 Sum_probs=107.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHH
Q 046803 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELF 296 (580)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 296 (580)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888888888887764 55678888888899999999999999988764 35678888888899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHhHcCC
Q 046803 297 HRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRA---GLLNEAYKFVKDVIGE 373 (580)
Q Consensus 297 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 373 (580)
++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++.+..
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9888742 2245677888888889999999999998887531 23467788888888888 8999999999887766
Q ss_pred CCC
Q 046803 374 KPA 376 (580)
Q Consensus 374 ~p~ 376 (580)
.|+
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=4e-08 Score=88.90 Aligned_cols=126 Identities=8% Similarity=0.035 Sum_probs=52.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHH
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGR 356 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 356 (580)
+...|.+.|++++|+..|++..+. .| +...+..+..++...|++++|...|+++.+. .| +...+..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 344444444444444444444442 22 2334444444444455555555555444431 22 24444444444433
Q ss_pred cCC--HHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 357 AGL--LNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 357 ~g~--~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
.|. .+++...++..+...|....+..+..++...|++++|+..|++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 322 22333333222221111222333344444455555555555555555554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.2e-09 Score=99.78 Aligned_cols=197 Identities=7% Similarity=-0.102 Sum_probs=151.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046803 220 LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRM 299 (580)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (580)
.|++++|.+++.+..+.. +.. .+...+++++|...|.+. ...|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 467788999988887642 111 122258899999988764 56788999999999999987
Q ss_pred HhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHhH
Q 046803 300 RAH----GVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLL--P--GVEHHVCMVDLFGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 300 ~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 370 (580)
.+. +-.+. ..+|..+...|...|++++|...|++..+-+.-. + ....+..+..+|.+ |++++|++.|+++
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 652 11111 3478888889999999999999999876542111 1 14677888999988 9999999999888
Q ss_pred cCCCC---C----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 371 IGEKP---A----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP------GHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 371 ~~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
+...| + ..++..+...+...|++++|+..+++++++.|.+. ..+..++.+|...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 74332 1 46788999999999999999999999998765543 26667788889999999999999998
Q ss_pred H
Q 046803 438 I 438 (580)
Q Consensus 438 ~ 438 (580)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-08 Score=89.72 Aligned_cols=123 Identities=9% Similarity=-0.025 Sum_probs=63.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK 391 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g 391 (580)
+..++...|++++|...|++..+. .| +...+..+..+|...|++++|++.|++.+...|+ +.+|..+...+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 455556666666666666665532 23 3555555666666666666666666555555553 555555555554443
Q ss_pred C--chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 392 N--FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 392 ~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+ .+.+...++++....|. ...+..++.++...|++++|...+++..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2 23334444444322221 123344455555566666666666665543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-08 Score=87.04 Aligned_cols=156 Identities=10% Similarity=-0.015 Sum_probs=118.0
Q ss_pred hhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHh
Q 046803 245 ATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSA-CAH 320 (580)
Q Consensus 245 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a-~~~ 320 (580)
...+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+......+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44556677888999999999988774 45678888888999999999999999887763 3443322222111 122
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---HHHHHHHHHHHHhcCCchHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---PAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a 396 (580)
.+...+|...+++..+. .| +...+..+...+...|++++|.+.|++.+...|+ ...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22333467888887753 35 5788888999999999999999999888888875 55899999999999999999
Q ss_pred HHHHHHHHh
Q 046803 397 VEVAEHLLS 405 (580)
Q Consensus 397 ~~~~~~~~~ 405 (580)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-08 Score=82.72 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=97.2
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHH
Q 046803 304 VRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWT 381 (580)
Q Consensus 304 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 381 (580)
+.|+. ..+......+.+.|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|++.+++++...|+ ...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44544 45667788889999999999999988753 2235788888999999999999999999888888884 88899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
.+..++...|++++|+..|+++++++|+++.++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999998888777654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-07 Score=88.54 Aligned_cols=161 Identities=6% Similarity=-0.063 Sum_probs=119.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHH
Q 046803 279 MISGYGMHGYGTEAVELFHRMRAHG-VRPNNV----TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVC 349 (580)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 349 (580)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667788888999999988887632 223321 2334556667778899999999888753222223 346888
Q ss_pred HHHHHHHcCCHHHHHHHHHhHc-------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------cchHH
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVI-------GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN------PGHYV 415 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 415 (580)
+...|...|++++|.+.|++++ ...|. ..++..+...|...|++++|+..+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8999999999999999998877 22222 4478899999999999999999999998765332 56788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHh
Q 046803 416 MLSNIYALAGR-MDRVEVVRNIMIQ 439 (580)
Q Consensus 416 ~l~~~y~~~g~-~~~a~~~~~~m~~ 439 (580)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999888754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.5e-08 Score=88.67 Aligned_cols=126 Identities=11% Similarity=0.020 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHh
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKM 389 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~ 389 (580)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|++.+++.+...| +...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3445556667777777777776552 45666777777777778888888888777776666 46677778888888
Q ss_pred cCCchHHHHHHHHHHhcCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 390 HKNFDLGVEVAEHLLSVEPENP----------------GHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 390 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
.|++++|+..++++++..|.+. ..+..++.+|...|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888777766 778888888888888888888888887653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.9e-08 Score=88.53 Aligned_cols=186 Identities=11% Similarity=0.005 Sum_probs=130.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--cHHHhhHHhhHhhhcCCHHHHHHHHHhccC--CCh----HHHH
Q 046803 206 DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDV--NVVLATSLINMYARCGNVSKAREIFDMMSE--LNV----IAWT 277 (580)
Q Consensus 206 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~ 277 (580)
+...+..+...+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667778899999999999999999864221 246788889999999999999999999874 332 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 046803 278 AMISGYGM------------------HGYGTEAVELFHRMRAHGVRPNNV-TFVAVLSACAHAGLVQEGHRVFASMRQEY 338 (580)
Q Consensus 278 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 338 (580)
.+..++.. .|+.++|+..|+++++. .|+.. ...... .. ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RL------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HH------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HH------HHHHHHH----
Confidence 55555554 45666777777766653 34332 111100 00 0000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 339 GLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 339 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
......+...|.+.|++++|+..|++.+...|+ ...+..+..++.+.|+.++|+..++++....|++..
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 011234677889999999999999888877675 256888999999999999999999999998887643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-06 Score=86.80 Aligned_cols=182 Identities=12% Similarity=-0.039 Sum_probs=97.3
Q ss_pred CChhHHHHHHccCCC--CChhhHHHHHHHHHcCCC-ccHHHHHHHHHHHC-CCCC-ChhhHHHHHHHHH----ccCChHH
Q 046803 54 GFITYAQRIFFCIPS--PDSFLFNTLIIRNSKANF-STDSLLFYRRMIVS-NISP-SNYTFSAVIKSCA----HLSILNL 124 (580)
Q Consensus 54 ~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~a~~----~~~~~~~ 124 (580)
++++.+.++|++... |++..|..-+.-..+.+. .+....+|+..+.. |..| +...|...+..+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 678899999987553 788889888877766653 45677788877654 5434 4455555555433 2356778
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHh-------------CCCHHHHHHHHccCCC----CChhHHHHHHHHHHhCCC
Q 046803 125 GRAVHCHVFVSGYDSDLHVQAALVNFYAK-------------SNNVDVARKVFDRMPD----KSVVAWNSMISGYEQNGF 187 (580)
Q Consensus 125 a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~ 187 (580)
++.+|+.+++.....-...|......-.. .+.+..|+.+++.+.. .+...|...+.--..++.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 89999998874322222333332221111 0112223333222211 123345444443222110
Q ss_pred -------hhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 046803 188 -------AKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ 236 (580)
Q Consensus 188 -------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 236 (580)
.+.+..+|+++... .+-+...|...+.-+...|+.+.|..+++..++.
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 23345566666553 2334455555555556666666666666666665
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.6e-08 Score=83.11 Aligned_cols=102 Identities=11% Similarity=-0.003 Sum_probs=89.3
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHH
Q 046803 339 GLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVM 416 (580)
Q Consensus 339 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 416 (580)
.+.| +...+..+...+.+.|++++|.+.|++.+...| +...|..+..++...|++++|+..|+++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344 355666778888999999999999988887778 58889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 046803 417 LSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 417 l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
++.+|...|++++|.+.+++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-07 Score=89.25 Aligned_cols=166 Identities=5% Similarity=-0.106 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CCC--H
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-N----VTFVAVLSACAHAGLVQEGHRVFASMRQEYGL--LPG--V 344 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 344 (580)
..+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888999999998888776432211 1 12334555667788999999999887642111 111 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHc---CCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC------C
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVI---GEKPA-----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE------N 410 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 410 (580)
..|+.+...|...|++++|.+.+++++ ...|+ ..++..+...|...|++++|+..+++++++.+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578888999999999999999998776 22332 257888999999999999999999998875422 1
Q ss_pred cchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 046803 411 PGHYVMLSNIYALAGRMDRV-EVVRNIMIQ 439 (580)
Q Consensus 411 ~~~~~~l~~~y~~~g~~~~a-~~~~~~m~~ 439 (580)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 46788899999999999999 777777653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-06 Score=82.67 Aligned_cols=230 Identities=9% Similarity=0.013 Sum_probs=169.8
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHh----hhc
Q 046803 183 EQNGFAKEAIGLFNLMRDFGVNPDST-TCVCVLAACAQLG--DIDLGRWVHEFIVGQGLDVNVVLATSLINMY----ARC 255 (580)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~ 255 (580)
.+....++|++++.+++.. .|+.. .|+.--.++...+ +++++...++.++... +.+..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 3344456888888888874 45443 5666666777777 8888888888888775 55566665544444 444
Q ss_pred ---CCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 046803 256 ---GNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGT--EAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL---- 323 (580)
Q Consensus 256 ---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~---- 323 (580)
++++++.++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...++.-.....+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 788899999888874 57778888877888888887 999999999986443 66677666666666666
Q ss_pred --HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHhHcCCC---C-CHHHHHHHHHHHHhcCCchHH
Q 046803 324 --VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE-AYKFVKDVIGEK---P-APAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 324 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~---p-~~~~~~~ll~~~~~~g~~~~a 396 (580)
++++.+.++.+... -+-|...|+.+..++.+.|+..+ +.++..+..... | ++..+..+...+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 88899999888753 23367888888888888888554 555665555433 4 678899999999999999999
Q ss_pred HHHHHHHHh-cCCCCcchHHHHH
Q 046803 397 VEVAEHLLS-VEPENPGHYVMLS 418 (580)
Q Consensus 397 ~~~~~~~~~-~~p~~~~~~~~l~ 418 (580)
+++++.+.+ .+|.+...|...+
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHH
Confidence 999999986 7998766665443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.80 E-value=8.2e-08 Score=82.86 Aligned_cols=129 Identities=7% Similarity=-0.071 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGAC 387 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~ 387 (580)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++.+...| +...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556666777788888888888877653 223567777888888889999999999988887777 477888899999
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI--YALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~m~~ 439 (580)
...|++++|...++++++..|.++..+..+..+ +...|++++|.+.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988877554444 7888999999999887643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-07 Score=88.73 Aligned_cols=159 Identities=7% Similarity=-0.109 Sum_probs=81.4
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVA-VLSA 317 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~a 317 (580)
...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...+++.... .|+...... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 33334444444444555555555544432 23344445555555555555555555554432 233322111 1122
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---HHHHHHHHHHHHhcCCch
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---PAVWTAMLGACKMHKNFD 394 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~ 394 (580)
+...++.++|...+++.... -+.+...+..+...|...|++++|++.+++.+...|+ ...+..++..+...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 44445555555555555432 1223555566666666666666666666666555553 445666666666666666
Q ss_pred HHHHHHHHHH
Q 046803 395 LGVEVAEHLL 404 (580)
Q Consensus 395 ~a~~~~~~~~ 404 (580)
+|...|++.+
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666666654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-07 Score=83.44 Aligned_cols=160 Identities=9% Similarity=-0.083 Sum_probs=86.2
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC-CChHHHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE-LNVIAWTAMISGYGMHG----YGTEAVELFHRMRAHGVRPNNVTFVAVLS 316 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 316 (580)
+..+..|..+|...+++++|.+.|++..+ .+..++..|...|.. + +.++|+.+|++..+.| +...+..|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 33444444444444555555555444432 233444444444444 3 5555555555555433 3344445555
Q ss_pred HHHh----cCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHhHcCCCCCHHHHHHHHH
Q 046803 317 ACAH----AGLVQEGHRVFASMRQEYGLLPG---VEHHVCMVDLFGR----AGLLNEAYKFVKDVIGEKPAPAVWTAMLG 385 (580)
Q Consensus 317 a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ll~ 385 (580)
.|.. .+++++|..+|++..+ ..|. ...+..|..+|.. .+++++|...|+++....+++..+..|..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGM 170 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5544 5566666666666542 2231 4555566666666 66677777777666544334555666666
Q ss_pred HHHhc-C-----CchHHHHHHHHHHhcCC
Q 046803 386 ACKMH-K-----NFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 386 ~~~~~-g-----~~~~a~~~~~~~~~~~p 408 (580)
.|... | +.++|...|+++.+.+.
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66532 2 67777777777776653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-07 Score=83.22 Aligned_cols=143 Identities=10% Similarity=-0.058 Sum_probs=69.5
Q ss_pred HHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 046803 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326 (580)
Q Consensus 247 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 326 (580)
.+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 334444455555555555555544444555555555555555555555555544421 1123344444444444444444
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 327 GHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 327 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
|...|+...+...-.+... .....+...|+ ...|..+..++...|++++|...++++++
T Consensus 90 A~~~~~~al~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLID--------------------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEE--------------------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCccHHH--------------------HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444444432111000000 00000012222 35677777777777778888888887777
Q ss_pred cCCCC
Q 046803 406 VEPEN 410 (580)
Q Consensus 406 ~~p~~ 410 (580)
..|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 77764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.8e-08 Score=79.77 Aligned_cols=97 Identities=10% Similarity=0.028 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
...+..+...+.+.|++++|++.|++.+...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44566777888889999999999988887777 47888889999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 046803 423 LAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~ 440 (580)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-07 Score=76.83 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHH
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGA 386 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~ 386 (580)
...+..+...+...|++++|.+.|+++.+. .+.+...+..+...+.+.|++++|...+++++...| +..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666667777778888888888777653 123466777788888888888888888877776555 47778888888
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046803 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAG 425 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 425 (580)
+...|++++|...++++++..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999988988888888888776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=9.8e-08 Score=78.37 Aligned_cols=118 Identities=10% Similarity=-0.018 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGA 386 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~ 386 (580)
...+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++.+...|+ ...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666677777888888888888887653 2235677778888888889999999888877766664 7788888889
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 046803 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 427 (580)
+...|++++|...++++++..|.++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888888999998888775
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.6e-08 Score=79.16 Aligned_cols=116 Identities=10% Similarity=0.054 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHH
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLG 385 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~ 385 (580)
...+..+...+...|++++|...|+...+ ..| +...+..+...|...|++++|.+.+++.+...| +...|..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34566666677777777777777777653 233 466777777888888888888888877776666 4777888888
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
++...|++++|+..++++++..|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888877664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=9.3e-08 Score=93.50 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
...|..+..+|.+.|++++|++.+++++...| +...|..+..++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46788899999999999999999999988888 58889999999999999999999999999999999999999999999
Q ss_pred hcCChhHH-HHHHHHHH
Q 046803 423 LAGRMDRV-EVVRNIMI 438 (580)
Q Consensus 423 ~~g~~~~a-~~~~~~m~ 438 (580)
..|++++| .+.++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44666664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.5e-07 Score=86.80 Aligned_cols=164 Identities=7% Similarity=-0.093 Sum_probs=121.7
Q ss_pred HHhhHHhhHhhhcCCHHHHHHHHHhccC--C-Ch------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--H
Q 046803 243 VLATSLINMYARCGNVSKAREIFDMMSE--L-NV------IAWTAMISGYGMHGYGTEAVELFHRMRAHGV---RPN--N 308 (580)
Q Consensus 243 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~ 308 (580)
..+...+..|...|++++|.+.+....+ + +. ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778888999999888876542 1 11 2334456667788999999999999875321 122 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-------
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-----VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA------- 376 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------- 376 (580)
.++..+...|...|++++|..+|+++.+.....|+ ...+..+...|.+.|++++|++.+++++...++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888889999999999999999988732211222 257888999999999999999999887733222
Q ss_pred HHHHHHHHHHHHhcCCchHH-HHHHHHHHhc
Q 046803 377 PAVWTAMLGACKMHKNFDLG-VEVAEHLLSV 406 (580)
Q Consensus 377 ~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 406 (580)
..+|..+...+...|++++| ...+++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 67789999999999999999 7778887753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.74 E-value=9.3e-07 Score=90.95 Aligned_cols=374 Identities=9% Similarity=-0.058 Sum_probs=206.0
Q ss_pred hhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-hHHHHHHHHHHHH
Q 046803 56 ITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSI-LNLGRAVHCHVFV 134 (580)
Q Consensus 56 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~ 134 (580)
++.|+.+|+.+. ..+-. |+++.+..+|++.+.. .|+...|..-+.-..+.++ .+....+|+.++.
T Consensus 11 i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~ 76 (493)
T 2uy1_A 11 LSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLG 76 (493)
T ss_dssp -CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHH
T ss_pred hHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 566666666543 22211 7888888888888763 4687777777766655543 3456777777776
Q ss_pred h-CC-CCchHHHHHHHHHHHh----CCCHHHHHHHHccCCC-C--Ch-hHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 046803 135 S-GY-DSDLHVQAALVNFYAK----SNNVDVARKVFDRMPD-K--SV-VAWNSMISGYEQNGFAKEAIGLFNLMRDFGVN 204 (580)
Q Consensus 135 ~-g~-~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 204 (580)
. |. ..+..+|...+..+.. .++++.++++|++... | +. ..|......- +......+..++.+..
T Consensus 77 ~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~----- 150 (493)
T 2uy1_A 77 QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL----- 150 (493)
T ss_dssp HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH-----
T ss_pred HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh-----
Confidence 4 43 2356777777766542 3567778888877644 2 11 1222221111 1111112222221110
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhc--C-----CHHHHHHHHHhccC---CChH
Q 046803 205 PDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARC--G-----NVSKAREIFDMMSE---LNVI 274 (580)
Q Consensus 205 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~--g-----~~~~A~~~~~~~~~---~~~~ 274 (580)
+.+..|+.++..+...--..+...|...++.-... | ..+.+..+|+++.. .+..
T Consensus 151 ----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~ 214 (493)
T 2uy1_A 151 ----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEE 214 (493)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHH
Confidence 12233444444333210001233444444432211 1 03345667776653 3466
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--------CCC---C
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYG--------LLP---G 343 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~~p---~ 343 (580)
.|...+.-+.+.|+.++|..+|++.... |+...+.. +|......++ +++.+.+.+- ..+ .
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHHTC----------CHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHHHHHhhccchhhhhccccc
Confidence 7888888888889999999999998886 55433222 2222111111 1233322210 001 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHK-NFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
...|...++.+.+.+.++.|..+|+++ ...+ +..+|......-...+ +.+.|..+|+.+++..|+++..+...++..
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 355777777777888899999999777 3222 3445543333333333 699999999999988888887777788888
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcC
Q 046803 422 ALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAG 488 (580)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 488 (580)
.+.|+.+.|..+++++.+ . ..-|. .+..-...+|+.+.+.+.+++....++..+
T Consensus 365 ~~~~~~~~aR~l~er~~k-----~-~~lw~-------~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~ 418 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEK-----T-SRMWD-------SMIEYEFMVGSMELFRELVDQKMDAIKADA 418 (493)
T ss_dssp HHHTCHHHHHHHHHHSCC-----B-HHHHH-------HHHHHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHH-----H-HHHHH-------HHHHHHHHCCCHHHHHHHHHHHHHHhcccc
Confidence 889999999999988621 0 00010 011112345666666666777666666444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.8e-06 Score=80.26 Aligned_cols=160 Identities=6% Similarity=-0.110 Sum_probs=121.6
Q ss_pred HHhhHhhhcCCHHHHHHHHHhccCC-----C----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHH
Q 046803 247 SLINMYARCGNVSKAREIFDMMSEL-----N----VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVR-PN----NVTFV 312 (580)
Q Consensus 247 ~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd----~~t~~ 312 (580)
..+..+...|++++|...+++..+. + ...+..+...+...|++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999887641 1 112334666677788999999999999873222 23 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCC------CCC-HHHH
Q 046803 313 AVLSACAHAGLVQEGHRVFASMRQEY----GLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGE------KPA-PAVW 380 (580)
Q Consensus 313 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~p~-~~~~ 380 (580)
.+..+|...|++++|..+|+++.+.. +..+. ...+..+...|.+.|++++|.+.+++++.. .+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88899999999999999999987422 11222 447888999999999999999999887732 222 6789
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHHhc
Q 046803 381 TAMLGACKMHKN-FDLGVEVAEHLLSV 406 (580)
Q Consensus 381 ~~ll~~~~~~g~-~~~a~~~~~~~~~~ 406 (580)
..+..++...|+ +++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999995 59999999998753
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.9e-08 Score=84.69 Aligned_cols=120 Identities=3% Similarity=0.015 Sum_probs=92.9
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHH-HHhcCCc--hH
Q 046803 320 HAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGA-CKMHKNF--DL 395 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~-~~~~g~~--~~ 395 (580)
..|++++|...++...+. .+.+...+..+...|...|++++|.+.|++.+...| +...|..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456777788788777653 123567778888888888888888888877776666 46777778877 7788888 99
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 396 GVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
|+..++++++.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999899888888889999999999999999998887753
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=6.6e-08 Score=78.87 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALA 424 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 424 (580)
.+..+...+.+.|++++|+..|++.+...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 345577788899999999999988888888 5888999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 046803 425 GRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 425 g~~~~a~~~~~~m~~~~ 441 (580)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=78.11 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc-------hHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG-------HYV 415 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 415 (580)
...+..+...+.+.|++++|++.|++++...|+ +..|..+..+|...|++++|+..++++++++|+++. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667889999999999999999999988884 888999999999999999999999999998887653 677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 046803 416 MLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 416 ~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.++.+|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788899999999999999998765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-07 Score=76.94 Aligned_cols=99 Identities=9% Similarity=-0.034 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
.+...+..+...+...|++++|...|++.+...|+ ...|..+...+...|++++|+..++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35777888888889999999999999888877774 78888899999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 046803 421 YALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 421 y~~~g~~~~a~~~~~~m~~~ 440 (580)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=81.00 Aligned_cols=96 Identities=11% Similarity=0.029 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
...+..+...+.+.|++++|++.|++.+...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44455555666666666666666666655555 35556666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 046803 423 LAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m~~ 439 (580)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=6.5e-08 Score=92.04 Aligned_cols=189 Identities=7% Similarity=-0.130 Sum_probs=100.3
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSA 317 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a 317 (580)
...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34444555555556666666666655442 24555666666666666666666666666553 23 33455556666
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHH
Q 046803 318 CAHAGLVQEGHRVFASMRQEYGLLPGV-EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 396 (580)
+...|++++|...|+...+.. |+. ..+...+....+..........- .....++..+...+.. + ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNSIE--ERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHHHH--HTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 666666666666666654321 110 00001111111111111111111 1122223333333322 2 25777888
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 046803 397 VEVAEHLLSVEPENPGHYVMLSNIYALA-GRMDRVEVVRNIMIQ 439 (580)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 439 (580)
++.++++++.+|++......+...+.+. +++++|.++|..+.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888888887776666776666665 678888888887755
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=97.07 Aligned_cols=118 Identities=8% Similarity=-0.025 Sum_probs=99.3
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCc
Q 046803 316 SACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNF 393 (580)
Q Consensus 316 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~ 393 (580)
..+.+.|++++|.+.|+++.+. .| +...|..+..+|.+.|++++|++.+++++...|+ ...|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456778899999999888753 34 4788889999999999999999999999988884 88899999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCChhHHHHHHHH
Q 046803 394 DLGVEVAEHLLSVEPENPGHYVMLSNI--YALAGRMDRVEVVRNI 436 (580)
Q Consensus 394 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~ 436 (580)
++|++.+++++++.|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8899999999999874
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=9.9e-08 Score=80.98 Aligned_cols=115 Identities=7% Similarity=-0.055 Sum_probs=91.6
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCC
Q 046803 296 FHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEK 374 (580)
Q Consensus 296 ~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 374 (580)
|+++.. +.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|++++...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 34433 45666777888899999999999988753 22357788888999999999999999998888777
Q ss_pred C-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 375 P-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 375 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
| ++..|..+..++...|++++|+..|++++++.|+++...
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 7 478888999999999999999999999999999877653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.7e-06 Score=80.30 Aligned_cols=223 Identities=12% Similarity=0.013 Sum_probs=120.5
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCH
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFGVNPDS-TTCVCVLAACAQLG-DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNV 258 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 258 (580)
...+.+..++|++++.+++.. .|+. ..|+.--.++...+ .++++..+++.+++.. +.+..+|+.-..++.+.
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l--- 136 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRI--- 136 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH---
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHh---
Confidence 333444455666666666553 3332 23444444444444 3555555555555443 33444444433333333
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--------HHHHH
Q 046803 259 SKAREIFDMMSELNVIAWTAMISGYGMHG-YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLV--------QEGHR 329 (580)
Q Consensus 259 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~--------~~a~~ 329 (580)
.+ ++++++++++++.+...+ |...+..-.-...+.|.+ .++.+
T Consensus 137 ---------------------------~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 137 ---------------------------SPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp ---------------------------CCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred ---------------------------cCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 03 444555555554442211 233333222222222222 36666
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCc--------
Q 046803 330 VFASMRQEYGLLPGVEHHVCMVDLFGRAGL-------LNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNF-------- 393 (580)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~-------- 393 (580)
.++++.+. -.-+...|+....++.+.++ ++++++.+++++...| |...|+.+-..+.+.|+.
T Consensus 189 ~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 189 WCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccc
Confidence 66666643 12355666666666666665 6788888888887777 577788777777766654
Q ss_pred ------------hHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 394 ------------DLGVEVAEHLLSVE------PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 394 ------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
........++.... +..+.+...|+.+|...|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222222 45566778899999999999999999999864
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-07 Score=74.75 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC--CcchHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE--NPGHYVMLSNI 420 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 420 (580)
...+..+...+.+.|++++|...+++.+...| +...|..+...+...|++++|+..++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 44555667777778888888888877766555 4667777778888888888888888888888887 77788888888
Q ss_pred HHhc-CChhHHHHHHHHHHhCC
Q 046803 421 YALA-GRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 421 y~~~-g~~~~a~~~~~~m~~~~ 441 (580)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888776654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=79.10 Aligned_cols=104 Identities=8% Similarity=-0.065 Sum_probs=81.2
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHH
Q 046803 304 VRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVW 380 (580)
Q Consensus 304 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 380 (580)
+.|+. ..+..+...+.+.|++++|...|+.+.+. .| +...|..+..+|.+.|++++|++.|++++...|+ +..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 34443 35666667778888888888888887743 34 5777888888888888888888888888877774 7778
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 381 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
..+..++...|++++|+..|++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 888888888888888888888888888874
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=7.1e-07 Score=71.58 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHH
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACK 388 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~ 388 (580)
.+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|.+.+++.+...| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444555555666666666666665542 122455556666666666666666666666665555 3556666666777
Q ss_pred hcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 389 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
..|++++|...++++++.+|+++..+..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777666555555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=3.7e-07 Score=81.70 Aligned_cols=171 Identities=8% Similarity=-0.017 Sum_probs=105.8
Q ss_pred hhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 046803 249 INMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQ 325 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 325 (580)
+......|++++|.+.|+...+ .....|..+...+...|++++|+..|++..+. .|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 3344445666666666553332 23445666677777777777777777777663 2221100000 000
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 326 EGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 326 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
.-. .. .....+..+..+|.+.|++++|+..+++.+...| +...|..+..++...|++++|+..+++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 00 0135677788889999999999999988887777 47889999999999999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHhcCChhHHH-HHHHHHHhC
Q 046803 405 SVEPENPGHYVMLSNIYALAGRMDRVE-VVRNIMIQK 440 (580)
Q Consensus 405 ~~~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~~~ 440 (580)
++.|.++.++..+..++...|+.+++. ..+..|...
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999888887777 555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.5e-07 Score=74.67 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
+...+..+...+.+.|++++|.+.+++.+...| +..+|..+...+...|++++|+..++++++..|.++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 477888899999999999999999999998888 5888999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 046803 422 ALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~ 440 (580)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=9.2e-07 Score=79.06 Aligned_cols=130 Identities=10% Similarity=-0.037 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC---CC-C----H
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEY---GLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE---KP-A----P 377 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p-~----~ 377 (580)
.+..+...+...|++++|...+++..... +..| ....+..+...|...|++++|.+.+++.+.. .+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 34444444444555555555444443211 1111 1334555555666666666666666554422 12 1 2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCC--CC----cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEP--EN----PGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.++..+...+...|++++|...++++++..+ .+ ..++..++.+|...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455666666666777777766666664321 11 12346677777777777777777776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-07 Score=72.40 Aligned_cols=98 Identities=10% Similarity=0.117 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
....+..+...+...|++++|.+.+++.+...| +...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345677788999999999999999988887777 5888999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 046803 422 ALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~ 440 (580)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999998764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.3e-07 Score=73.90 Aligned_cols=111 Identities=7% Similarity=-0.044 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGAC 387 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~ 387 (580)
..+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.+++.+...|+ ...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34556666777788888888888877653 1234677788888888888888888888888877774 77788888888
Q ss_pred HhcCCchHHHHHHHHHHhcC------CCCcchHHHHHHHH
Q 046803 388 KMHKNFDLGVEVAEHLLSVE------PENPGHYVMLSNIY 421 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y 421 (580)
...|++++|+..++++++++ |.++.....+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888999999888888888 77666666555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.8e-07 Score=76.67 Aligned_cols=107 Identities=10% Similarity=-0.030 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGAC 387 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~ 387 (580)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|++++...| ++..|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34556667788889999999999888753 223577788888999999999999999988887777 477888899999
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
...|++++|+..+++++++.|+++......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 999999999999999999999877655443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.4e-07 Score=79.44 Aligned_cols=128 Identities=5% Similarity=0.038 Sum_probs=95.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-HHHcCCH--
Q 046803 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL-FGRAGLL-- 360 (580)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 360 (580)
...|++++|+..+++..+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34567777888887777642 2355677777788888888888888888877532 2356677777877 7788888
Q ss_pred HHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 361 NEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 361 ~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
++|...+++.+...|+ ...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999888877774 77888888999999999999999999999999876543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-07 Score=86.15 Aligned_cols=135 Identities=15% Similarity=0.011 Sum_probs=86.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHH
Q 046803 278 AMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG--VEHHVCMVDLFG 355 (580)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 355 (580)
.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 3455666777777777777766653 344434444445677777888887777655321 1 121 234556777788
Q ss_pred HcCCHHHHHHHHHhHcCCC--CC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 356 RAGLLNEAYKFVKDVIGEK--PA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~~--p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
+.|++++|++.|++...-. |. ...+.....++...|+.++|...|+++...+|+ +.....|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8888888888886665222 43 345667777778888888888888888888876 5444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.4e-07 Score=76.93 Aligned_cols=110 Identities=8% Similarity=-0.045 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGA 386 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~ 386 (580)
...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.|++.+...|+ ...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4566777778888899999999998887532 235778888999999999999999999888888885 8889999999
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCcchHHHHHH
Q 046803 387 CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSN 419 (580)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 419 (580)
+...|++++|+..|+++++++|+++..+.....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999886655443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-06 Score=78.40 Aligned_cols=153 Identities=12% Similarity=0.003 Sum_probs=95.0
Q ss_pred hcCCHHHHHH---HHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHH
Q 046803 254 RCGNVSKARE---IFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA----HGVRP-NNVTFVAVLSACAHAGLVQ 325 (580)
Q Consensus 254 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-d~~t~~~ll~a~~~~g~~~ 325 (580)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223445666667777777777777777776654 11122 2245666666777788888
Q ss_pred HHHHHHHHhHHhc---CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC---CCC----HHHHHHHHHHHHhcCCc
Q 046803 326 EGHRVFASMRQEY---GLLP--GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE---KPA----PAVWTAMLGACKMHKNF 393 (580)
Q Consensus 326 ~a~~~~~~~~~~~---~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~ll~~~~~~g~~ 393 (580)
+|...+++..+.. +..| ....+..+...+...|++++|.+.+++.+.. .++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 8887777765431 2111 1345667777788888888888888766521 112 23456777788888888
Q ss_pred hHHHHHHHHHHhc
Q 046803 394 DLGVEVAEHLLSV 406 (580)
Q Consensus 394 ~~a~~~~~~~~~~ 406 (580)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=7.1e-07 Score=72.38 Aligned_cols=97 Identities=18% Similarity=0.300 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
...+..+...+.+.|++++|.+.+++++...| +..+|..+...+...|++++|+..++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56778889999999999999999988886666 57889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 046803 423 LAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~ 440 (580)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=73.39 Aligned_cols=110 Identities=14% Similarity=-0.018 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAM 383 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 383 (580)
..+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|++.+++.+...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 4444555555555555555555555542 2333 45555666666677777777777766665555 35666677
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 384 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
..++...|++++|...++++++..|+++..+..+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777777777777777777777777666555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=73.94 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 418 (580)
+...+..+...+...|++++|.+.|++.+...|+ ...|..+...+...|++++|+..++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5778888999999999999999999999998897 678899999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 046803 419 NIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 419 ~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999998764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-06 Score=80.13 Aligned_cols=181 Identities=9% Similarity=-0.041 Sum_probs=134.1
Q ss_pred hcCCHHHHHHHHHhccC---CChHHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCCH---------------
Q 046803 254 RCGNVSKAREIFDMMSE---LNVIAWTAM-------ISGYGMHGYGTEAVELFHRMRAHGVRPNN--------------- 308 (580)
Q Consensus 254 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--------------- 308 (580)
..++.+.|.+.|.+..+ .....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888888764 335677777 4555555555666665555443 22221
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----H
Q 046803 309 -------VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----P 377 (580)
Q Consensus 309 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~ 377 (580)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|++.... |+ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHH
Confidence 2233456678889999999999998863 3464336666777899999999999999655443 33 2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVE--PE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 468889999999999999999999998543 44 4457788999999999999999999999874
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-05 Score=75.78 Aligned_cols=179 Identities=12% Similarity=0.023 Sum_probs=99.7
Q ss_pred HHHHHHHHhccC---CChHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 046803 259 SKAREIFDMMSE---LNVIAWTAMISGYGMHG--YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGL-VQEGHRVFA 332 (580)
Q Consensus 259 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~ 332 (580)
+++..+++.+.. .+..+|+.-.-.+...| .+++++.++.++.+...+ |...|+.-.-.+...|. ++++.+.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 344444444432 34445554444444444 245555555555553222 33444444444444454 355555555
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc-------
Q 046803 333 SMRQEYGLLPGVEHHVCMVDLFGRA--------------GLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH------- 390 (580)
Q Consensus 333 ~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~------- 390 (580)
.+.+.. +.+...|+....++.+. +.++++++.+.+++...| |...|+.+-..+...
T Consensus 170 ~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 555421 12344444444443333 457788888878877777 577777665555544
Q ss_pred ----CCchHHHHHHHHHHhcCCCCcchHHHHHHHHH---hcCChhHHHHHHHHHHhC
Q 046803 391 ----KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA---LAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 391 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~---~~g~~~~a~~~~~~m~~~ 440 (580)
+.++++++.++++++.+|++.-.+..++.... ..|..+++...+.++++.
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45678888888888888887554444433222 356677777788777763
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=9e-07 Score=76.20 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCC------------------CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGE------------------KPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSV 406 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 406 (580)
.+......+.+.|++++|++.|++++.. .|. ...|..+..++.+.|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555566666666666666555543 332 456788888888888888888888888888
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 407 EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 407 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+|.++.+|..++.+|...|++++|...+++..+.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 8888888888888888888888888888887663
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.7e-06 Score=73.13 Aligned_cols=130 Identities=11% Similarity=-0.035 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3456677778888888888888888887742 225667777888888889999999988888753 2335777888888
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCC-CHHHHHH--HHHHHHhcCCchHHHHHHHHHHh
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKP-APAVWTA--MLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
.+.+.|++++|.+.+++.+...| +...+.. ++..+...|++++|+..+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 89999999999999988876666 3555533 33447778889999888887654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-07 Score=76.19 Aligned_cols=94 Identities=12% Similarity=0.026 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-------------HHHHHHHHHHHHhcCCchHHHHHHHHHHhc-------
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-------------PAVWTAMLGACKMHKNFDLGVEVAEHLLSV------- 406 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 406 (580)
+......+...|++++|++.|++++...|+ ...|..+..++...|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344556666777777777777777655544 237888888888888888888888888888
Q ss_pred CCCCcchH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 407 EPENPGHY----VMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 407 ~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+|+++..| ...+.++...|++++|...|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888 88888888888888888888887653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-06 Score=83.71 Aligned_cols=191 Identities=10% Similarity=-0.060 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHH
Q 046803 207 STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGY 283 (580)
Q Consensus 207 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 283 (580)
...+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|...|++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555556666666666666666666553 44566677777777777777777777776654 3456777778888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 046803 284 GMHGYGTEAVELFHRMRAHGVRPNN-VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362 (580)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 362 (580)
...|++++|+..|++..+. .|+. ..+...+..... ..++... ..... .....+......+... ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~-~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRW-NSIEE-RRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHH-HHHHH-TCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHH-HHHHH-HHHhhhHHHHHHHHHH--HHHHHHH
Confidence 8888888888888877653 2221 011111111111 1111111 11222 2344454444444443 3689999
Q ss_pred HHHHHHhHcCCCCCHH-HHHHHHHHHHhc-CCchHHHHHHHHHHhcC
Q 046803 363 AYKFVKDVIGEKPAPA-VWTAMLGACKMH-KNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 363 A~~~~~~~~~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~ 407 (580)
|++.+++++...|+.. ....+...+... +.+++|.++|+++.+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999988888888643 344444445554 67888999999887643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=89.20 Aligned_cols=145 Identities=12% Similarity=0.033 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
...|..+...|.+.|++++|+..|++.++. .|+...+ .-+...+ ... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHH-HHH--------HHHHHHHHHHH
Confidence 345666666677777777777777766652 1221100 0000000 000 11467888999
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 431 (580)
+|.+.|++++|+..+++++...| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888 48889999999999999999999999999999999999999999999999998887
Q ss_pred H-HHHHHHh
Q 046803 432 V-VRNIMIQ 439 (580)
Q Consensus 432 ~-~~~~m~~ 439 (580)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 5 4555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=7.8e-05 Score=71.80 Aligned_cols=157 Identities=10% Similarity=-0.059 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 046803 143 VQAALVNFYAKSNNVDVARKVFDRMPD---KSVVAWNSMISGYEQNG-FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACA 218 (580)
Q Consensus 143 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 218 (580)
+++.+-....+.+..++|+++++.+.. .+..+|+.--..+...| .+++++++++.+.... +-+...|+.-...+.
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 344444445556666789999998865 35678888888888888 5999999999999863 335567777666666
Q ss_pred hC-C-ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHH--------HHHHHHHhccC---CChHHHHHHHHHHHh
Q 046803 219 QL-G-DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVS--------KAREIFDMMSE---LNVIAWTAMISGYGM 285 (580)
Q Consensus 219 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~--------~A~~~~~~~~~---~~~~~~~~li~~~~~ 285 (580)
.. + +++++.++++.+++.. +.+..+|+--..++.+.|.++ ++.+.++++.+ .|..+|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 65 6 7788888888888765 556666665554444444444 55555555543 345566655555555
Q ss_pred cCC-------hHHHHHHHHHHHh
Q 046803 286 HGY-------GTEAVELFHRMRA 301 (580)
Q Consensus 286 ~g~-------~~~A~~~~~~m~~ 301 (580)
.+. ++++++.+++++.
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHH
Confidence 544 3455555555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-06 Score=72.37 Aligned_cols=101 Identities=5% Similarity=-0.123 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHH
Q 046803 307 NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLG 385 (580)
Q Consensus 307 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~ 385 (580)
+...+..+...+...|++++|...|+..... .+.+...+..+..+|...|++++|...+++.+...|+ ...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4567777777888888888888888887653 1234677888888888889999998888888777774 778888888
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCC
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
++...|++++|+..+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 899999999999999999888776
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.5e-06 Score=68.14 Aligned_cols=118 Identities=11% Similarity=-0.095 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence 4566677777888888888888888877642 225567777777888888888888888888753 2234677778888
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCc
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNF 393 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~ 393 (580)
.+.+.|++++|.+.+++.+...| +...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888999999988887777666 467777777777777765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.9e-05 Score=73.52 Aligned_cols=193 Identities=10% Similarity=0.023 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcC--CHHHHHHHHHhccC---CChHHHHHHHHHHHhcCC-hHHHHHHH
Q 046803 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG--NVSKAREIFDMMSE---LNVIAWTAMISGYGMHGY-GTEAVELF 296 (580)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 296 (580)
++++..+++.+.... |.+..+|+.-..++.+.| .++++.++++.+.+ +|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456667777777654 556667766666666666 47778887777764 566777777666677777 47888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc----
Q 046803 297 HRMRAHGVRPNNVTFVAVLSACAHA--------------GLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRA---- 357 (580)
Q Consensus 297 ~~m~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---- 357 (580)
.++++..+. |...|+.....+.+. +.++++.+.+...... .| |...|+-+--.+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 888775433 555565555544443 3467788888777643 34 466665454444444
Q ss_pred -------CCHHHHHHHHHhHcCCCCCHHHHHHHHHH-----HHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 358 -------GLLNEAYKFVKDVIGEKPAPAVWTAMLGA-----CKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 358 -------g~~~~A~~~~~~~~~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
+.++++++.+++.+...||. .|..+..+ ....+..++....+.++.+++|...+-|..|..-+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 46889999998888888874 44432222 22457778999999999999999777776665443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=90.24 Aligned_cols=86 Identities=13% Similarity=0.036 Sum_probs=40.8
Q ss_pred HhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 046803 248 LINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGL 323 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~ 323 (580)
+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..+++..+. .| +...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 34445555555555555554432 23444555555555555555555555555442 22 22344444444444445
Q ss_pred HHHHHHHHHHhH
Q 046803 324 VQEGHRVFASMR 335 (580)
Q Consensus 324 ~~~a~~~~~~~~ 335 (580)
+++|.+.|+++.
T Consensus 90 ~~eA~~~~~~al 101 (477)
T 1wao_1 90 FRAALRDYETVV 101 (477)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555544444444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-06 Score=83.76 Aligned_cols=130 Identities=6% Similarity=-0.105 Sum_probs=106.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN----------------NVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+..++.+.|++++|...|+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3457777888888888888888888888874 333 3788888889999999999999999988
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 046803 336 QEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLG-VEVAEHLLS 405 (580)
Q Consensus 336 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 405 (580)
+. .+.+...|..+..+|...|++++|++.|++++...| +..++..+..++...|+.++| ...++++++
T Consensus 224 ~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 EL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 223578888999999999999999999998888888 478899999999999999988 456776654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=7.7e-07 Score=79.57 Aligned_cols=163 Identities=7% Similarity=-0.067 Sum_probs=81.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-ChHHHHHHHHHHHhcCCh
Q 046803 213 VLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-NVIAWTAMISGYGMHGYG 289 (580)
Q Consensus 213 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 289 (580)
........|.++.+.+.+....+.. ......+..+...|.+.|++++|...|++..+ | +. .|... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-EWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-TCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc-ccchh--------hH
Confidence 3344455677777776665433221 22455677888899999999999999998763 1 21 00000 00
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 046803 290 TEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKD 369 (580)
Q Consensus 290 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 369 (580)
..- -..+ ....+..+..+|...|++++|...++...+. .+.+...+..+..+|...|++++|.+.|++
T Consensus 80 ~~~---~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 80 LDK---KKNI-------EISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHH---HHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHH---HHHH-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 000 0000 1233444555555566666666666555532 122355555666666666666666666666
Q ss_pred HcCCCC-CHHHHHHHHHHHHhcCCchHHH
Q 046803 370 VIGEKP-APAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 370 ~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
.+...| +..++..+...+...++.+++.
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 655555 3555555555555555554444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.9e-07 Score=74.49 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=57.7
Q ss_pred HcCCHHHHHHHHHhHcCC---CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 046803 356 RAGLLNEAYKFVKDVIGE---KPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 431 (580)
..|++++|++.|++.+.. .|+ ...|..+..++...|++++|+..++++++.+|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356677777777776666 343 5567777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHh
Q 046803 432 VVRNIMIQ 439 (580)
Q Consensus 432 ~~~~~m~~ 439 (580)
+.+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-06 Score=67.45 Aligned_cols=101 Identities=13% Similarity=-0.055 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC---HHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA---PAVWTAMLG 385 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~ll~ 385 (580)
..+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|.+.+++.+...|+ ...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34555666677778888888887777653 1234667777888888888888888888777766664 677888888
Q ss_pred HHHhc-CCchHHHHHHHHHHhcCCCCc
Q 046803 386 ACKMH-KNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 386 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 411 (580)
.+... |++++|++.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88899 999999999999998888754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.8e-06 Score=70.24 Aligned_cols=98 Identities=13% Similarity=-0.005 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHH
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACK 388 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~ 388 (580)
+..+...+.+.|++++|...|+.+.+. .| +...|..+..++.+.|++++|+..|++++...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444556777888888888888888753 34 577777888888888999999998888887777 4778888888888
Q ss_pred hcCCchHHHHHHHHHHhcCCCCc
Q 046803 389 MHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 389 ~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
..|++++|+..++++++.+|.++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 89999999999999988888753
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-06 Score=70.91 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=63.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCCC-H---HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC---cchHHHHHHHHH
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKPA-P---AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN---PGHYVMLSNIYA 422 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~ 422 (580)
+...+.+.|++++|.+.|++.+...|+ . ..+..+..++...|++++|+..++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 455566777777777777666654443 2 466667777777777777777777777777776 556777777777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 046803 423 LAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~ 440 (580)
..|++++|.+.++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777777653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=73.68 Aligned_cols=74 Identities=9% Similarity=0.040 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCC-------CCC-HHHH----HHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGE-------KPA-PAVW----TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
.|..+..++.+.|++++|+..+++++.. .|+ ...| .....++...|++++|+..|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777788888888888888888777766 996 6778 999999999999999999999999999998876
Q ss_pred HHHHHH
Q 046803 414 YVMLSN 419 (580)
Q Consensus 414 ~~~l~~ 419 (580)
+..+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 655433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2e-06 Score=70.31 Aligned_cols=107 Identities=5% Similarity=0.003 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC----C----HHHHHH
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP----A----PAVWTA 382 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p----~----~~~~~~ 382 (580)
+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++.+...| + ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444444555555555555554432 112344444555555555555555555544443222 1 445556
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
+..++...|++++|...++++++..| ++.....+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 66666666666666666666666655 34444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.6e-06 Score=70.90 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-------cchHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN-------PGHYV 415 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 415 (580)
...+..+...+...|++++|...+++.+...| +...+..+...+...|++++|...++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45677788999999999999999988887777 58889999999999999999999999999988776 77899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 416 MLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 416 ~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-05 Score=66.32 Aligned_cols=103 Identities=9% Similarity=-0.035 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC-CCCC----HHHHH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYG-LLPG----VEHHV 348 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~----~~~~~ 348 (580)
++..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|.+.++...+... ..++ ...|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4445555555566666666666655552 232 34455555555555666665555555543210 0011 12344
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcCCCCCHHH
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 379 (580)
.+...+...|++++|++.|++.+...||+.+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 4455555555555555555555444444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.3e-06 Score=83.44 Aligned_cols=138 Identities=9% Similarity=0.014 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVD 352 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 352 (580)
..|..+...+.+.|++++|+..|++.++. .|+.. .....+++ . ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~-------~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG-------A---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH-------G---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH-------H---HHHHHHHHHHHHHHH
Confidence 45666777777777777777777776652 11100 00011111 0 1223 3677888999
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 431 (580)
+|.+.|++++|++.+++++...|+ ...|..+..++...|++++|+..+++++++.|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998884 8889999999999999999999999999999999999999999999988888776
Q ss_pred HH
Q 046803 432 VV 433 (580)
Q Consensus 432 ~~ 433 (580)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.8e-06 Score=72.40 Aligned_cols=94 Identities=10% Similarity=0.112 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCCC---CC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC------CCcc
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGEK---PA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP------ENPG 412 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 412 (580)
.+..+...+...|++++|.+.+++.+... ++ ..++..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44445555555666666666555444111 11 33455666666777777777777777665421 1234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566788888888888888888877654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.2e-06 Score=73.76 Aligned_cols=77 Identities=16% Similarity=0.048 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP-GHYVMLSNI 420 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 420 (580)
...|..+..+|.+.|++++|+..+++++...|+ +..|..+..++...|++++|+..++++++++|+++ .....|..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 567888899999999999999999888888884 88899999999999999999999999999999987 444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-05 Score=65.69 Aligned_cols=104 Identities=10% Similarity=-0.002 Sum_probs=71.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----HHHHHHHHHHHH
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----PAVWTAMLGACK 388 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ll~~~~ 388 (580)
+...+...|++++|...|+.+.+...-.+. ...+..+...+.+.|++++|.+.|++.+...|+ +..+..+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444566777777777777777653221111 145666777788888888888888777655553 566777788888
Q ss_pred hcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 389 MHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 389 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
..|++++|...++++++..|+++......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 88888888888888888888765544333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=70.89 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=69.6
Q ss_pred cCCHHHHHHHHHHhHHhcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGL-LP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~ 397 (580)
.|++++|...|++..+. +. .| +...+..+..+|.+.|++++|++.|++.+...|+ ..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 56777788888777632 10 23 3667778888888888888888888888877774 777888888888899999999
Q ss_pred HHHHHHHhcCCCCcchHH
Q 046803 398 EVAEHLLSVEPENPGHYV 415 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~~~ 415 (580)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999888888765543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=85.93 Aligned_cols=149 Identities=10% Similarity=-0.028 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 456778888888999999999999998873 455432 22233334433222 1 136777889
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCChhHH
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY-ALAGRMDRV 430 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~~a 430 (580)
+|.+.|++++|+..+++++...| +...|..+..++...|++++|+..|+++++++|+++.++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888778 5888999999999999999999999999999999999998888884 456677888
Q ss_pred HHHHHHHHhCC
Q 046803 431 EVVRNIMIQKG 441 (580)
Q Consensus 431 ~~~~~~m~~~~ 441 (580)
.+.+++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888876543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-05 Score=80.92 Aligned_cols=125 Identities=9% Similarity=0.017 Sum_probs=99.3
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcC--C---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHhHc--------CCCCC-HHHHH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYG--L---LPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVI--------GEKPA-PAVWT 381 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~--~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~p~-~~~~~ 381 (580)
.+...|++++|..++++..+... + .|+ ..+++.|..+|...|++++|+.++++++ +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578899999888887765421 1 122 5678889999999999999999987776 34455 56699
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 382 AMLGACKMHKNFDLGVEVAEHLLS-----VEPENPGH---YVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 382 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
.|...|...|++++|+.+++++++ ++|+.|.+ ...|..++...|++++|+.++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 56776654 4578888999999999999999998754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-05 Score=67.79 Aligned_cols=133 Identities=11% Similarity=0.036 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVR-PN----NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG----VE 345 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 345 (580)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554431100 11 124455555666666666666666665432111111 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCC---CCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGE---KPA----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
.+..+...+...|++++|.+.+++.+.. .++ ..++..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5556667777777777777777665521 111 3456677777888888888888888877643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.6e-06 Score=67.65 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------cchHH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN------PGHYV 415 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 415 (580)
+...+..+...+.+.|++++|++.|++.+...| +...|..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 456677788889999999999999988887777 57889999999999999999999999999999988 66777
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 046803 416 MLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 416 ~l~~~y~~~g~~~~a~~~~~ 435 (580)
.++.++...|+.++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888877766655443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.3e-06 Score=81.61 Aligned_cols=153 Identities=8% Similarity=-0.025 Sum_probs=84.8
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 321 (580)
...+..+...|.+.|++++|...|++..+.+.... .+...|+.+++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888999999999999999998764221111 1223344444433221 13677888889999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHH-HHhcCCchHHHHH
Q 046803 322 GLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGA-CKMHKNFDLGVEV 399 (580)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~-~~~~g~~~~a~~~ 399 (580)
|++++|...++...+. .+.+...|..+..+|...|++++|.+.|++++...|+ ...+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998753 2235788889999999999999999999888888885 5566666655 3455678888999
Q ss_pred HHHHHhcCCCCc
Q 046803 400 AEHLLSVEPENP 411 (580)
Q Consensus 400 ~~~~~~~~p~~~ 411 (580)
|.++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0001 Score=74.45 Aligned_cols=156 Identities=9% Similarity=-0.022 Sum_probs=74.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCh----------------hHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCC
Q 046803 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDS----------------TTCVCVLAACAQLGDIDLGRWVHEFIVGQ--GLDV 240 (580)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~ 240 (580)
...+.+.|++++|++.|.+..+....... ..+..+...|...|++++|.+.+..+.+. .+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567788899999988888775322111 12445555566666666666655554432 1110
Q ss_pred c---HHHhhHHhhHhhhcCCHHHHHHHHHhccC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CC--
Q 046803 241 N---VVLATSLINMYARCGNVSKAREIFDMMSE-----L----NVIAWTAMISGYGMHGYGTEAVELFHRMRAH--GV-- 304 (580)
Q Consensus 241 ~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 304 (580)
. ..+.+.+...+...|+++.|..++..... . -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 0 11223333344444555555555544321 0 0223444455555555555555555544321 11
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046803 305 RPN-NVTFVAVLSACAHAGLVQEGHRVFASM 334 (580)
Q Consensus 305 ~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~ 334 (580)
.|. ..++..++..|...|++++|..+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 111 123444444455555555555555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=5.8e-05 Score=78.86 Aligned_cols=170 Identities=8% Similarity=-0.042 Sum_probs=133.2
Q ss_pred CHHHHHHHHHhccC---CChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 046803 257 NVSKAREIFDMMSE---LNVIAWTAMISGYGMHGY----------GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG- 322 (580)
Q Consensus 257 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g- 322 (580)
.-++|.+.++.+.+ .+..+|+.--..+...|+ ++++++.++++.+...+ +..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34566777776664 345567766666666666 88999999999885333 5567777777778888
Q ss_pred -CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc---------
Q 046803 323 -LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG-LLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH--------- 390 (580)
Q Consensus 323 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~--------- 390 (580)
+++++.+.++++.+. -+-+...|+.-.-++.+.| .++++++.+++++...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999864 2236777877777788888 89999999989999888 588898888777663
Q ss_pred -----CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 046803 391 -----KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 391 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 429 (580)
+.++++++.+.+++..+|++..+|..+..++.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999888554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.5e-05 Score=76.42 Aligned_cols=186 Identities=10% Similarity=-0.024 Sum_probs=125.3
Q ss_pred HHHHHhCCCHHHHHHHHccCCCC-----C---------------hhHHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCC
Q 046803 148 VNFYAKSNNVDVARKVFDRMPDK-----S---------------VVAWNSMISGYEQNGFAKEAIGLFNLMRDF-GVNPD 206 (580)
Q Consensus 148 i~~y~~~g~~~~A~~~f~~~~~~-----~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~ 206 (580)
...+.+.|++++|.+.|.++.+. + ..++..+...|...|++++|.+.+.++... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567889999999999876431 1 124778899999999999999999888653 11222
Q ss_pred hhH----HHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-------
Q 046803 207 STT----CVCVLAACAQLGDIDLGRWVHEFIVGQ----GLD-VNVVLATSLINMYARCGNVSKAREIFDMMSE------- 270 (580)
Q Consensus 207 ~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------- 270 (580)
..+ .+.+-..+...|+.+.+..++...... +.. .-..++..|...|...|++++|..++.+...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 222 222333344568899999998877643 222 2356778899999999999999999887642
Q ss_pred -C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046803 271 -L-NVIAWTAMISGYGMHGYGTEAVELFHRMRAH--GVR-P-N--NVTFVAVLSACAHAGLVQEGHRVFAS 333 (580)
Q Consensus 271 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-d--~~t~~~ll~a~~~~g~~~~a~~~~~~ 333 (580)
+ .+..|..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1 2457888899999999999999999887641 111 1 1 12333334444555566655555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=79.54 Aligned_cols=68 Identities=10% Similarity=0.019 Sum_probs=62.7
Q ss_pred CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 373 EKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 373 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..| +..+|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 444 36789999999999999999999999999999999999999999999999999999999998764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.16 E-value=8.2e-06 Score=61.94 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
...+..+...+.+.|++++|.+.+++.+...| +..+|..+...+...|++++|+..++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56677788889999999999999988887777 47788999999999999999999999999999999999999988887
Q ss_pred hcC
Q 046803 423 LAG 425 (580)
Q Consensus 423 ~~g 425 (580)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-05 Score=81.72 Aligned_cols=98 Identities=8% Similarity=0.027 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC----------------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 046803 344 VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA----------------PAVWTAMLGACKMHKNFDLGVEVAEHLLSVE 407 (580)
Q Consensus 344 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 407 (580)
...+..+...|.+.|++++|+..|++++...|+ ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 344555666666777777777777666644443 5789999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 408 PENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 408 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
|+++.+|..++.+|...|++++|...+++..+..
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=64.42 Aligned_cols=79 Identities=9% Similarity=0.079 Sum_probs=68.6
Q ss_pred HHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 362 EAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 362 ~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+|++.|++.+...| +...|..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777777777777 47888889999999999999999999999999999999999999999999999999999988663
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.6e-06 Score=71.52 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=75.0
Q ss_pred HHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCc----------hHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046803 355 GRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNF----------DLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423 (580)
Q Consensus 355 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 423 (580)
.|.+++++|.+.+++++...| ++..|..+..++...+++ ++|+..|+++++++|+++.+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 356778889988888888888 578888888888877765 599999999999999999999999999998
Q ss_pred cC-----------ChhHHHHHHHHHHhCC
Q 046803 424 AG-----------RMDRVEVVRNIMIQKG 441 (580)
Q Consensus 424 ~g-----------~~~~a~~~~~~m~~~~ 441 (580)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999998754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=3.1e-05 Score=60.24 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=58.8
Q ss_pred CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 374 KP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 374 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.| ++..|..+...+...|++++|+..|+++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35 57788899999999999999999999999999999999999999999999999999999987653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=67.23 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=67.0
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHhHcCCCCC-HHHHHHHHHHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGL----------LNEAYKFVKDVIGEKPA-PAVWTAMLGACK 388 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~ 388 (580)
.+.+++|.+.++...+. .| +...|..+..++...++ +++|+..|++++.+.|+ ..+|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34556666666666542 23 46666666666666655 46999999999988885 788999999998
Q ss_pred hcC-----------CchHHHHHHHHHHhcCCCCc
Q 046803 389 MHK-----------NFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 389 ~~g-----------~~~~a~~~~~~~~~~~p~~~ 411 (580)
..| ++++|+..|+++++++|++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 774 89999999999999999974
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0002 Score=72.94 Aligned_cols=124 Identities=9% Similarity=-0.070 Sum_probs=93.7
Q ss_pred HHHhcCChHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHh----cCC-CCC-HHHHH
Q 046803 282 GYGMHGYGTEAVELFHRMRAH---GVRPN----NVTFVAVLSACAHAGLVQEGHRVFASMRQE----YGL-LPG-VEHHV 348 (580)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~---g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~-~p~-~~~~~ 348 (580)
.+..+|++++|+.++++.++. -+-|+ ..+++.|..+|...|++++|..++++..+- +|- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999887642 12233 247888888999999999999988887642 222 233 66788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHc--------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVI--------GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS 405 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 405 (580)
.|..+|...|++++|+.++++++ +..|+ ..+...|..++...+.+++|+..|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877 23344 34456677778889999999999998865
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=73.06 Aligned_cols=117 Identities=9% Similarity=0.087 Sum_probs=88.1
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCC--------CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh-----cCCCCc---ch
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGE--------KPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS-----VEPENP---GH 413 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 413 (580)
+.-+.+.|++++|++++++.+.. .|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466788999999998777622 232 45688999999999999999999999875 445554 46
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 046803 414 YVMLSNIYALAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCR 485 (580)
Q Consensus 414 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 485 (580)
++.|+.+|..+|++++|..++++..+--.. .-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999987652110 112369999999888888777665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00014 Score=58.07 Aligned_cols=81 Identities=7% Similarity=0.046 Sum_probs=60.3
Q ss_pred HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 326 EGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 326 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
+|...|+...+ ..| +...+..+...|.+.|++++|+..|++.+...|+ ...|..+..++...|++++|...++++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556666653 234 4667777888888888888888888777766664 677888888888888888888888888
Q ss_pred HhcCCC
Q 046803 404 LSVEPE 409 (580)
Q Consensus 404 ~~~~p~ 409 (580)
+++.|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 877664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0013 Score=68.55 Aligned_cols=182 Identities=12% Similarity=-0.009 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCC----------HHHHHHHHHhccC---CChHHHHHHHHHHHhcC--C
Q 046803 224 DLGRWVHEFIVGQGLDVNVVLATSLINMYARCGN----------VSKAREIFDMMSE---LNVIAWTAMISGYGMHG--Y 288 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~ 288 (580)
++|.+.++.+++.+ +.+..+|+.--.++.+.|+ ++++.+.++.+.+ ++..+|+.-.-.+.+.| +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 34455555555543 3344444444444444444 6666666666653 45566666666666667 5
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc---------
Q 046803 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAG-LVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRA--------- 357 (580)
Q Consensus 289 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------- 357 (580)
++++++.++++.+...+ |...|..-..++.+.| .++++.+.++++.+ ..| +...|+....++.+.
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHhhccccccccc
Confidence 57777777777775333 5556666666666667 67777777777763 233 456666655555542
Q ss_pred -----CCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchH------------HHHHHHHHHhcCCCC
Q 046803 358 -----GLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDL------------GVEVAEHLLSVEPEN 410 (580)
Q Consensus 358 -----g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~------------a~~~~~~~~~~~p~~ 410 (580)
+.+++|++.+++++...| |...|..+...+.+.+..++ |+..|.+.++++|..
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 568999999999998888 58889999888888887655 444455666666653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00031 Score=53.48 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHhcCC---chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 375 PAPAVWTAMLGACKMHKN---FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 375 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+...|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 367788888888765555 79999999999999999999999999999999999999999999987643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.64 E-value=7.1e-05 Score=59.03 Aligned_cols=92 Identities=8% Similarity=-0.051 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-------HHHH
Q 046803 308 NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-------PAVW 380 (580)
Q Consensus 308 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~ 380 (580)
...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|++.+++.+...|+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 345555666666777777777777766642 1224566666777777777777777777777766664 4455
Q ss_pred HHHHHHHHhcCCchHHHHHHH
Q 046803 381 TAMLGACKMHKNFDLGVEVAE 401 (580)
Q Consensus 381 ~~ll~~~~~~g~~~~a~~~~~ 401 (580)
..+..++...|+.+.|...++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 556666666666665544433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00016 Score=56.11 Aligned_cols=67 Identities=7% Similarity=0.063 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 409 (580)
+...+..+...|.+.|++++|++.|++.+...|+ ...|..+..+|...|++++|+..+++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4667777888888888888888888878777774 677888888888888888888888888876553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00046 Score=53.04 Aligned_cols=65 Identities=11% Similarity=0.252 Sum_probs=53.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCCC-HH-HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKPA-PA-VWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
....+.+.|++++|.+.+++.+...|+ .. .|..+..++...|++++|+..|+++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456677888999999999888777774 66 888888888899999999999999999999887766
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00072 Score=67.69 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCC---C-HHHHHHHHHHHHHcCCHHHHHHHHHhHc--------CCCCC-HHHHHHHHH
Q 046803 321 AGLVQEGHRVFASMRQEYG--LLP---G-VEHHVCMVDLFGRAGLLNEAYKFVKDVI--------GEKPA-PAVWTAMLG 385 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~--~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~p~-~~~~~~ll~ 385 (580)
.|++++|..++++..+... +.| + ..+++.|..+|...|++++|+.++++++ +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4667777777766654311 112 2 4567777777777788877777776665 33454 455778888
Q ss_pred HHHhcCCchHHHHHHHHHHh-----cCCCCcch
Q 046803 386 ACKMHKNFDLGVEVAEHLLS-----VEPENPGH 413 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 413 (580)
.|...|++++|+.+++++++ ++|++|.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 88888888888888888764 45665543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0019 Score=53.37 Aligned_cols=89 Identities=3% Similarity=-0.052 Sum_probs=45.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh--
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM----HKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL-- 423 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-- 423 (580)
|..+|...+.+++|.+.|+++... -++..+..|...|.. .+++++|...|+++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGK 107 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCC
Confidence 444444444444455555443322 234444444444444 45555555555555544 234555566666665
Q ss_pred --cCChhHHHHHHHHHHhCC
Q 046803 424 --AGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 424 --~g~~~~a~~~~~~m~~~~ 441 (580)
.+++++|.+.+++..+.|
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 566666666666655544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0002 Score=71.81 Aligned_cols=84 Identities=8% Similarity=0.078 Sum_probs=69.9
Q ss_pred HcCCHHHHHHHHHhHc--------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh-----cCCCCc---chHHHHH
Q 046803 356 RAGLLNEAYKFVKDVI--------GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLS-----VEPENP---GHYVMLS 418 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 418 (580)
..|++++|+.++++.+ +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578999999997766 23344 56799999999999999999999999885 455554 5688899
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 046803 419 NIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 419 ~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0054 Score=58.99 Aligned_cols=139 Identities=10% Similarity=-0.061 Sum_probs=83.5
Q ss_pred CChHHHHHHHHHHH--hcCC---hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cC--C---HHHHHHHHHHhHH
Q 046803 271 LNVIAWTAMISGYG--MHGY---GTEAVELFHRMRAHGVRPNN-VTFVAVLSACAH---AG--L---VQEGHRVFASMRQ 336 (580)
Q Consensus 271 ~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~---~g--~---~~~a~~~~~~~~~ 336 (580)
.+..+|...+.+.. ..+. ..+|..+|++.++ ..|+. ..+..+.-+|.. .+ . .......+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46667777666543 2333 4688888888887 46664 333333333321 01 1 1111111111111
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
....+.+...|..+...+...|++++|...+++++...|+...|..+...+...|++++|.+.+++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 112234566777776666667888888888877776677777777777777888888888888888888887643
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00094 Score=55.29 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=73.3
Q ss_pred HHHHHHHHHhHcCC-CCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChhHHHHH
Q 046803 360 LNEAYKFVKDVIGE-KPAPAVWTAMLGACKMHK---NFDLGVEVAEHLLSVE-P-ENPGHYVMLSNIYALAGRMDRVEVV 433 (580)
Q Consensus 360 ~~~A~~~~~~~~~~-~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~ 433 (580)
+..+.+.|.+.... .++..+...+..++.+.+ +.++++.+++++++.+ | .+...+..|+.+|.+.|++++|.+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555444432 246777777777777777 6668888888888877 6 4567788888888888888888888
Q ss_pred HHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccC
Q 046803 434 RNIMIQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYVP 491 (580)
Q Consensus 434 ~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 491 (580)
++.+.+. .|+..++......+.+.+++.|++-
T Consensus 94 ~~~lL~i--------------------------eP~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 94 VRGLLQT--------------------------EPQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp HHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhc--------------------------CCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 8888763 3555556665566666777777654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0016 Score=65.25 Aligned_cols=101 Identities=12% Similarity=0.014 Sum_probs=74.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcC--CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhHc--------CCCCC-HHH
Q 046803 315 LSACAHAGLVQEGHRVFASMRQEYG--LLPG----VEHHVCMVDLFGRAGLLNEAYKFVKDVI--------GEKPA-PAV 379 (580)
Q Consensus 315 l~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~p~-~~~ 379 (580)
+..+.+.|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++++ +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4445667888888888887764311 2222 5677888888888899988888887666 34454 556
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh-----cCCCCcchHH
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLS-----VEPENPGHYV 415 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 415 (580)
++.|...|...|++++|+.+++++++ ++|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88999999999999999999999875 5687765544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00068 Score=50.89 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 377 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
...|..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5678889999999999999999999999999999999999999999999999999999998764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0029 Score=52.19 Aligned_cols=108 Identities=9% Similarity=-0.093 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh----cCCHHHHH
Q 046803 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR----CGNVSKAR 262 (580)
Q Consensus 187 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~ 262 (580)
++++|++.|++..+.| .|+.. +...+...+.+++|.+++....+.| +...+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555544 22222 3333444444555555555555443 33344444444444 44444444
Q ss_pred HHHHhccC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHhC
Q 046803 263 EIFDMMSE-LNVIAWTAMISGYGM----HGYGTEAVELFHRMRAH 302 (580)
Q Consensus 263 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 302 (580)
+.|++..+ .+..++..|...|.. .++.++|+.+|++..+.
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 44444332 233344444444444 34444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0036 Score=47.47 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 342 PGVEHHVCMVDLFGRAGL---LNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
.+...+..+..++...++ .++|..++++++...|+ +..+..+...+...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467777788888865555 79999999999988885 7888888999999999999999999999999884
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0022 Score=59.11 Aligned_cols=88 Identities=11% Similarity=0.154 Sum_probs=74.2
Q ss_pred HHHHHHHHHhHcCCCCC---HHHHHHHHHHHHh-----cCCchHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CChhH
Q 046803 360 LNEAYKFVKDVIGEKPA---PAVWTAMLGACKM-----HKNFDLGVEVAEHLLSVEPEN-PGHYVMLSNIYALA-GRMDR 429 (580)
Q Consensus 360 ~~~A~~~~~~~~~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~ 429 (580)
..+|...+++++.+.|+ ...|..|...|.+ -|+.++|.+.|+++++++|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 56788888888888887 5678889988888 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 046803 430 VEVVRNIMIQKGLKKHVG 447 (580)
Q Consensus 430 a~~~~~~m~~~~~~~~~~ 447 (580)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876553343
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0018 Score=49.54 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=54.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSVEPENPG-HYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
....+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778899999999999999999999999 99999999999999999999999998753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.068 Score=58.42 Aligned_cols=154 Identities=10% Similarity=0.068 Sum_probs=102.0
Q ss_pred HHHcCCCccHHHH-HHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Q 046803 80 RNSKANFSTDSLL-FYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVD 158 (580)
Q Consensus 80 ~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 158 (580)
.....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+ +.. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHH
Confidence 3445778888766 44221 112233666777778888888776542 211 1134467789999
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 046803 159 VARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGL 238 (580)
Q Consensus 159 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 238 (580)
+|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...++.+....+-+.....|.
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 9999988774 568999999999999999999999998753 33455555567777776666666655541
Q ss_pred CCcHHHhhHHhhHhhhcCCHHHHHHHHHhc
Q 046803 239 DVNVVLATSLINMYARCGNVSKAREIFDMM 268 (580)
Q Consensus 239 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 268 (580)
++....+|.++|++++|.+++.++
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 233444566677777777765543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.037 Score=60.55 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=56.3
Q ss_pred HhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
....+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 345567777777776555 3456777777777777777777777776643 22333444445555554444
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046803 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFV 367 (580)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 367 (580)
-+..... | .++....+|.+.|++++|++++
T Consensus 730 ~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 730 AKDAETT-G------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHc-C------chHHHHHHHHHcCCHHHHHHHH
Confidence 3333221 1 1222333455566666666666
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.081 Score=42.07 Aligned_cols=140 Identities=12% Similarity=0.089 Sum_probs=97.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046803 284 GMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 363 (580)
.-.|..++..++..+.... .+..-++.++--....-+=+-..++++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 4467777888888777653 24455666665555555556666666666443222 235555555
Q ss_pred HHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 364 YKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
...+ -.++ .+..-...-+......|.-|.-.+++..++..+|.+|.....++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~-~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECG-VINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHH-HHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHH-HHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 5555 2222 233445566777788899999999999987777878999999999999999999999999999999976
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.013 Score=45.35 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC-------C-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 343 GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE-------K-PAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 343 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
+..-+-.|...+.+.|+++.|...|++++.. . +...++..|..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344556777788888888888888766621 1 2367788899999999999999999999999999987665
Q ss_pred HHH
Q 046803 415 VML 417 (580)
Q Consensus 415 ~~l 417 (580)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.93 Score=47.22 Aligned_cols=80 Identities=14% Similarity=0.051 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC
Q 046803 142 HVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG 221 (580)
Q Consensus 142 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 221 (580)
..-+.-+..+.+.+++......+.. +..+...-.....+....|+..+|....+.+-..| ...+.....++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3445556677788899998887776 43455555556677788898888888777776655 334455666666666555
Q ss_pred Ch
Q 046803 222 DI 223 (580)
Q Consensus 222 ~~ 223 (580)
.+
T Consensus 151 ~l 152 (618)
T 1qsa_A 151 KQ 152 (618)
T ss_dssp CS
T ss_pred CC
Confidence 44
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.011 Score=48.96 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHhHcCCC-C--CHHHHHHHHHHHHhcCCchHHH
Q 046803 324 VQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG---LLNEAYKFVKDVIGEK-P--APAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~-p--~~~~~~~ll~~~~~~g~~~~a~ 397 (580)
...+++-|.+..+. + .++..+...+.-++++.+ ++++++.++++.+... | +...+..|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34455556555432 2 356667667777788877 6668888887666555 5 2556777888899999999999
Q ss_pred HHHHHHHhcCCCCcch
Q 046803 398 EVAEHLLSVEPENPGH 413 (580)
Q Consensus 398 ~~~~~~~~~~p~~~~~ 413 (580)
+.++++++.+|+|..+
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999987543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.054 Score=52.09 Aligned_cols=74 Identities=9% Similarity=0.034 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHH
Q 046803 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWT 381 (580)
Q Consensus 305 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 381 (580)
+.+..++..+...+...|++++|...++++... .|+...|..+...+.-.|++++|.+.|++++...|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 345566666655566668888888888877753 26666677777777778888888888877777777766543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.036 Score=44.05 Aligned_cols=64 Identities=13% Similarity=-0.019 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHhcCCchH---HHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 376 APAVWTAMLGACKMHKNFDL---GVEVAEHLLSVE-P-ENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 376 ~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..+-..+..++.+..+... ++.+++.+.+.+ | ........|+.++.+.|++++|.+..+.+.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334444444333322 444444444433 2 2233444455555555555555555555544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.17 Score=40.97 Aligned_cols=103 Identities=8% Similarity=-0.014 Sum_probs=66.5
Q ss_pred HHHHHHHhHcCCCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 362 EAYKFVKDVIGEKPAPAVWTAMLGACKMHK---NFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 362 ~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
...+-|.+.....|+..+--.+..++.+.. +..+++.+++.+...+|. .......|+.+|.+.|++++|.+..+.+
T Consensus 24 ~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 24 ILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp HHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334444333233456666555555665554 445778888888877774 3456667888888888888888888888
Q ss_pred HhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 046803 438 IQKGLKKHVGYSTVEVDQKNYLFSMGDKSHPNTNEIYQYLDELMGRCREAGYV 490 (580)
Q Consensus 438 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 490 (580)
.+. .|...++.+.-..+.++|.+.|++
T Consensus 104 L~~--------------------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 104 FEH--------------------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp HHT--------------------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred Hhc--------------------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 763 355556666556666777777765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.24 Score=42.02 Aligned_cols=128 Identities=13% Similarity=0.085 Sum_probs=75.8
Q ss_pred HhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 251 MYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 251 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
...++|+++.|.++.+.+ .+...|..+......+|+.+-|.+.|++... |..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888877665 4567788888888888888888888887653 33444455566776665554
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 046803 331 FASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHL 403 (580)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 403 (580)
-+....+ | -++.....+.-.|+++++.+++ ...+.-|... .....+|-.+.|.++.+++
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL-~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIF-AEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHH-HHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHH-HHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 4443321 1 1233344455678888888888 4333222111 1123355566666665544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.52 Score=39.91 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=67.4
Q ss_pred HHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHH
Q 046803 149 NFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRW 228 (580)
Q Consensus 149 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 228 (580)
+....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456678888888877665 3567888888888888888888888877642 3334444555677666665
Q ss_pred HHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc
Q 046803 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS 269 (580)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 269 (580)
+-+.....| . +|.....+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555555554 1 3333444555677777777776554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.022 Score=52.48 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=62.9
Q ss_pred HHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHh-cCCc
Q 046803 325 QEGHRVFASMRQEYGLLPG---VEHHVCMVDLFGRA-----GLLNEAYKFVKDVIGEKPA--PAVWTAMLGACKM-HKNF 393 (580)
Q Consensus 325 ~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~-~g~~ 393 (580)
..|...+++.. .+.|+ -..|..|...|.+. |+.++|.+.|++++.+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34444455444 33454 44566677777763 7777777777777777773 6666666776666 3777
Q ss_pred hHHHHHHHHHHhcCCCC-cchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 394 DLGVEVAEHLLSVEPEN-PGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 394 ~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
+++.+.++++++..|.. |. ..+.+. ++-.+|..+++++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~--~~lan~----~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPH--NKLLVI----LSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSS--CHHHHH----HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCC--hhHHHH----HHHHHHHHHHHHh
Confidence 88888888887766652 32 223332 2334555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.12 Score=39.83 Aligned_cols=67 Identities=9% Similarity=0.012 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 310 TFVAVLSACAHAGLVQEGHRVFASMRQEYG-----LLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 310 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
-...+...+.+.|+++.|...|+.+.+... -.+....+..|..+|.+.|++++|..++++++...|+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 344555666666666666666666654321 1234566777778888888888888888777767774
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.26 Score=39.11 Aligned_cols=90 Identities=11% Similarity=0.085 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHhHcCCC-C--CHHHHHHHHHHHHhcCCchHH
Q 046803 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE---AYKFVKDVIGEK-P--APAVWTAMLGACKMHKNFDLG 396 (580)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~-p--~~~~~~~ll~~~~~~g~~~~a 396 (580)
.+..+.+-|...... +. |+..+-..+.-++.+.....+ ++.++++..... | .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344555556555432 33 666666667777888776665 888886666655 4 234455677789999999999
Q ss_pred HHHHHHHHhcCCCCcchH
Q 046803 397 VEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~ 414 (580)
.+.++.+++.+|+|..+.
T Consensus 94 ~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 999999999999886543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.00014 Score=71.17 Aligned_cols=253 Identities=15% Similarity=0.114 Sum_probs=155.0
Q ss_pred ChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 046803 55 FITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFV 134 (580)
Q Consensus 55 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 134 (580)
+++.|.+.-++..+|. .|..|..+..+.++..+|++.|-+. -|...|..++.++.+.|.+++-...+..+.+
T Consensus 40 ~ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5666666666665554 4888888888888888887766332 1555677888888888888887777766655
Q ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC------------
Q 046803 135 SGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG------------ 202 (580)
Q Consensus 135 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------------ 202 (580)
. ..++.+-+.|+-+|+|.+++.+-.+++. .+|+.-...+.+-|...|.++.|.-+|..+....
T Consensus 112 ~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 112 K--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp T--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred H--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 4 3445566678888888888766444332 2455455556666666666666655554432110
Q ss_pred --------CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc---CC
Q 046803 203 --------VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMS---EL 271 (580)
Q Consensus 203 --------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~ 271 (580)
-.-+..||-.+-.+|...+.+..|...--.++-. +.-...++..|-+.|.+++-+.+++.-. ..
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErA 261 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERA 261 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTC
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCch
Confidence 1235678888888998888887665443333321 1123356777888888888777777544 35
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046803 272 NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFA 332 (580)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 332 (580)
..-.|+-|.-.|++- ++++..+.++..-. +.| .--++.+|.+...|.++.-+|.
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHh
Confidence 566777777777765 34444444333221 111 1135666666666666555444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.79 Score=37.39 Aligned_cols=103 Identities=8% Similarity=0.133 Sum_probs=64.8
Q ss_pred CCChHHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHhHH
Q 046803 270 ELNVIAWTAMISGYGMHGYG------TEAVELFHRMRAHGVRPNNV----TFVAVLS---ACAHAGLVQEGHRVFASMRQ 336 (580)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~pd~~----t~~~ll~---a~~~~g~~~~a~~~~~~~~~ 336 (580)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|.-+.- .+...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45677888888877777888 7888888877764 555431 1211111 11233677777777777765
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC
Q 046803 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP 375 (580)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 375 (580)
. .-.- ...|......-.|+|++..|.+++.++++..|
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 3 2222 66666666666677777777777766666555
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.33 Score=38.69 Aligned_cols=66 Identities=8% Similarity=-0.016 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 374 KPAPAVWTAMLGACKMHK---NFDLGVEVAEHLLSVEPE-NPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 374 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
.|++.+--.+..++.+.. +..+++.+++.+.+.+|. ....+..|+.++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345554444444444443 344667777777766663 345566677777777777777777777655
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.16 Score=53.96 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=48.9
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 384 LGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 384 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
..-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|.-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456678999999999999999999999999999999999999999999988873
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.20 E-value=3.7 Score=38.45 Aligned_cols=169 Identities=10% Similarity=0.052 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhHHHHHHHHHH
Q 046803 143 VQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGL----FNLMRDFGVNPDSTTCVCVLAACA 218 (580)
Q Consensus 143 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~ 218 (580)
.+.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+...+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3444555588999999999886542 3445667887666654 455556688888888888887776
Q ss_pred hCCCh-----HHHHHHHHHHHHcCC--CCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhc---CC
Q 046803 219 QLGDI-----DLGRWVHEFIVGQGL--DVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMH---GY 288 (580)
Q Consensus 219 ~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 288 (580)
....- .-.........+.|- .-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 54321 222233333333332 236788888999999999999999988744333555565555544443 43
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 046803 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQE 337 (580)
Q Consensus 289 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 337 (580)
..++ |...-..++ -|.-.|++..|..+|+...+.
T Consensus 184 ~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 3332 112222233 344678888898888877654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.08 E-value=0.0035 Score=61.63 Aligned_cols=238 Identities=11% Similarity=0.066 Sum_probs=171.3
Q ss_pred ChhhhchHHHHHhccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 046803 39 SRSMLTKLLSLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAH 118 (580)
Q Consensus 39 ~~~~~~~ll~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 118 (580)
.+.+|+.|-++..+.+.+.+|..-|-+. .|+..|..+|....+.|.+++-+..+...++..-.|.. =+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHHh
Confidence 4568888887777888888888777544 56677999999999999999988887766655444433 4568889999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCC------------------------CChhH
Q 046803 119 LSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPD------------------------KSVVA 174 (580)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~~ 174 (580)
.+++.+-+++. -.|+..-.....+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 99887654432 145555566677888888999999888887652 36779
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhh
Q 046803 175 WNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYAR 254 (580)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 254 (580)
|..+-.+|...+.+.-|.-.--.+. +.|| ....++.-|...|.+++-.++++...... .....+++-|.-.|+|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 9999999999999887765444443 2232 23345666788899999888888877433 4567888888888887
Q ss_pred cCCHHHHHHHHHhccC-----------CChHHHHHHHHHHHhcCChHHHHH
Q 046803 255 CGNVSKAREIFDMMSE-----------LNVIAWTAMISGYGMHGYGTEAVE 294 (580)
Q Consensus 255 ~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~ 294 (580)
- +.++-.+.++.... .....|.-++-.|.+-.+++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 44444444443221 244578888888888888887753
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.00 E-value=4.2 Score=38.36 Aligned_cols=167 Identities=12% Similarity=0.058 Sum_probs=102.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCChhHHHHHHHHHHh
Q 046803 144 QAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLF----NLMRDFGVNPDSTTCVCVLAACAQ 219 (580)
Q Consensus 144 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~ 219 (580)
+.++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +...+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 344555588999999999876432 34456677776665554 444566788888888888887776
Q ss_pred CCChHH-HHHHHHHH----HHcC--CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHH
Q 046803 220 LGDIDL-GRWVHEFI----VGQG--LDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEA 292 (580)
Q Consensus 220 ~~~~~~-a~~~~~~~----~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 292 (580)
...-+- =..+.+.+ .+.| ..-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-- 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-- 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--
Confidence 654221 12233333 3333 23366777888999999999999999985333333456655554444433211
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 046803 293 VELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336 (580)
Q Consensus 293 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 336 (580)
.+|.+.-..++ -|.-.+++..|..+++...+
T Consensus 185 ------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 12333333444 35567888888887776654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.79 E-value=9.2 Score=41.60 Aligned_cols=251 Identities=10% Similarity=-0.064 Sum_probs=116.7
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhHHHH--HHHHHHhCCChHHHHHHHHHHHHcCC-------CCcHHHhh--HHh
Q 046803 181 GYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVC--VLAACAQLGDIDLGRWVHEFIVGQGL-------DVNVVLAT--SLI 249 (580)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~--~li 249 (580)
|....|+.++++.++......+-..+...-.. +.-+....|..+.+..++...+...- .+...... .|.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567777777777766543211122222222 22233445555566666666554321 01122222 333
Q ss_pred hHhhhcCCHHHHHHHHHhccCCChHH--HHH--HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCC
Q 046803 250 NMYARCGNVSKAREIFDMMSELNVIA--WTA--MISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFV--AVLSACAHAGL 323 (580)
Q Consensus 250 ~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~g~ 323 (580)
-+|.-.++-+-...+...+...+..+ ..+ |...|.-.|+.+-...++..+.+.. +..... .+.-++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 34444455333333333333333221 122 2223344566666666666655421 222222 23334446777
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHhHcCCCCCHHH--HHHHHHHHHhcCCchHHHHH
Q 046803 324 VQEGHRVFASMRQEYGLLPGVEHHV--CMVDLFGRAGLLNEAYKFVKDVIGEKPAPAV--WTAMLGACKMHKNFDLGVEV 399 (580)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~ 399 (580)
.+.+..+.+.+.. ...|....-. ++.-+|+..|+.....+++ +.+...++..+ ...+.-+....|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~aIq~LL-~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSAVKRLL-HVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHH-HHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777777777754 2223322222 3344566777876666677 44322333332 22333344456676666666
Q ss_pred HHHHHhcCCCCcchHH--HHHHHHHhcCCh-hHHHHHHHHHHh
Q 046803 400 AEHLLSVEPENPGHYV--MLSNIYALAGRM-DRVEVVRNIMIQ 439 (580)
Q Consensus 400 ~~~~~~~~p~~~~~~~--~l~~~y~~~g~~-~~a~~~~~~m~~ 439 (580)
++.+.+.. |+.+-. .++-+....|+. .++..++..+..
T Consensus 617 v~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 65554432 222222 222223333332 566777777753
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.76 E-value=3.1 Score=33.22 Aligned_cols=86 Identities=10% Similarity=-0.055 Sum_probs=63.9
Q ss_pred HhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 046803 152 AKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHE 231 (580)
Q Consensus 152 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 231 (580)
.+||++......+-.+.. +....+.-++....+|.-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 356666666666655433 344556667788888998888888888644 357888888889999999999999999999
Q ss_pred HHHHcCCC
Q 046803 232 FIVGQGLD 239 (580)
Q Consensus 232 ~~~~~~~~ 239 (580)
++-+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 98888853
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.02 E-value=1.2 Score=36.25 Aligned_cols=53 Identities=6% Similarity=-0.011 Sum_probs=38.5
Q ss_pred CCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 046803 391 KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGLK 443 (580)
Q Consensus 391 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 443 (580)
+|.++|.++|+.++++...-+..+...+..-.++|+.+.|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 78888888888887765444556666666667888888888888887765533
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.42 E-value=14 Score=35.96 Aligned_cols=163 Identities=10% Similarity=0.013 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHc-C-C--CCcHHHhhHHhhHhhhc-CCHHHHHHHHHhccC---CChHHH---
Q 046803 208 TTCVCVLAACAQLGDIDLGRWVHEFIVGQ-G-L--DVNVVLATSLINMYARC-GNVSKAREIFDMMSE---LNVIAW--- 276 (580)
Q Consensus 208 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~--~~~~~~~~~li~~y~~~-g~~~~A~~~~~~~~~---~~~~~~--- 276 (580)
.....+...|.+.|+.++..+++...... + + .-.......|++.+... +..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777776666654321 0 0 11233455666666553 333333344333321 111222
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-CCCCCHHH-
Q 046803 277 ---TAMISGYGMHGYGTEAVELFHRMRAHGVRPNN-----VTFVAVLSACAHAGLVQEGHRVFASMRQEY-GLLPGVEH- 346 (580)
Q Consensus 277 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~- 346 (580)
..++..|...|++.+|..++.++.+.=-..|. ..+..-+..|...+++.++...+....... .+.+++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14566777777777777777777653111121 234444456667777777777776664322 11122211
Q ss_pred ---HHHHHHHHH-HcCCHHHHHHHHHhH
Q 046803 347 ---HVCMVDLFG-RAGLLNEAYKFVKDV 370 (580)
Q Consensus 347 ---~~~li~~~~-~~g~~~~A~~~~~~~ 370 (580)
..+-..++. ..+++.+|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 112223344 567777777666444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.37 E-value=14 Score=34.71 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=100.4
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELF----HRMRAHGVRPNNVTFVAVLSACA 319 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~t~~~ll~a~~ 319 (580)
.|.++..=|.+.+++++|.+++..- ...+.++|+...|-++- +-..+.++++|......|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445556678888888888876432 23455566655554443 44455677888877777777665
Q ss_pred hcCC--HHHHHHHHHHhH---HhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCC
Q 046803 320 HAGL--VQEGHRVFASMR---QEYGL--LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMHKN 392 (580)
Q Consensus 320 ~~g~--~~~a~~~~~~~~---~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 392 (580)
.... .+. ..+.+.+. .++|- .-++.....+...|.+.+++.+|...| ..+.++.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TTSCTTHHHHHHHHHHHHHHTSC
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--HhcCCchHHHHHHHHHHHHHhcC
Confidence 5442 111 12222222 12232 235677778899999999999999988 24544445666555554444333
Q ss_pred chHHHHHHHHHHhcCCCCcchHHH-HHHHHHhcCChhHHHHHHHHHHh
Q 046803 393 FDLGVEVAEHLLSVEPENPGHYVM-LSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 393 ~~~a~~~~~~~~~~~p~~~~~~~~-l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
|.....|.. .+--|...++...|..+++...+
T Consensus 183 ---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222333332 23357788899999998877654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.28 E-value=5.2 Score=29.76 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 046803 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199 (580)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 199 (580)
...++|..+-+.+...+- ...+--.-+..+...|++++|..+.+.+.-||...|-+|... +.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 456677777776666553 333333334567789999999999999999999999887654 7788888888887887
Q ss_pred HCCCCCChhHHH
Q 046803 200 DFGVNPDSTTCV 211 (580)
Q Consensus 200 ~~g~~p~~~t~~ 211 (580)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 44444444
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.15 E-value=5.6 Score=29.67 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 046803 120 SILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMR 199 (580)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 199 (580)
...++|..+-+.+...+- ...+--.-+..+...|++++|..+.+.+.-||...|-+|... +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 456677777777666553 333333334567789999999999999999999999888654 6777888887777777
Q ss_pred HCCCCCChhHHH
Q 046803 200 DFGVNPDSTTCV 211 (580)
Q Consensus 200 ~~g~~p~~~t~~ 211 (580)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 44444444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.13 E-value=3 Score=31.24 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 288 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
+.-+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 455777778888888899999999999999999999999999999998765443 456766654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.49 E-value=15 Score=36.46 Aligned_cols=187 Identities=6% Similarity=0.023 Sum_probs=119.2
Q ss_pred CCChhHHHHHHHHHHHC-----CCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCcHH--HhhHHhhHhhhcC
Q 046803 185 NGFAKEAIGLFNLMRDF-----GVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQ-GLDVNVV--LATSLINMYARCG 256 (580)
Q Consensus 185 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~li~~y~~~g 256 (580)
.|++++|++.+..+.+. ...........++..|...++++...+.+..+.+. |..+... ..+.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37789999888776642 22334556788899999999999888777666543 3222211 1122333333333
Q ss_pred CHH--HHHHHHHhccC---C--C-----hHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCH---HHHHHHHHHHH
Q 046803 257 NVS--KAREIFDMMSE---L--N-----VIAWTAMISGYGMHGYGTEAVELFHRMRA--HGVRPNN---VTFVAVLSACA 319 (580)
Q Consensus 257 ~~~--~A~~~~~~~~~---~--~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~---~t~~~ll~a~~ 319 (580)
..+ .-..+.+.... . - ......|...|...|++.+|..++.++.. .|..+.. ..+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222 22333333321 1 0 12335677888999999999999999875 3333221 35666777899
Q ss_pred hcCCHHHHHHHHHHhHHhc-CC--CCC--HHHHHHHHHHHHHcCCHHHHHHHHHhHc
Q 046803 320 HAGLVQEGHRVFASMRQEY-GL--LPG--VEHHVCMVDLFGRAGLLNEAYKFVKDVI 371 (580)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~-~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 371 (580)
..+++..|..+++++.... .. .|+ ...|.+++..+...+++.+|...|.+..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999875321 12 222 4567888888899999999988885554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.46 E-value=32 Score=37.50 Aligned_cols=286 Identities=10% Similarity=-0.014 Sum_probs=125.1
Q ss_pred HHHHHHHHcCCCccHH-HHH-HHHHHHCCCCCChhhHHHH-HHHHHccCChHHHHHHHHHHHHhC--CCCchHHHHHHHH
Q 046803 75 NTLIIRNSKANFSTDS-LLF-YRRMIVSNISPSNYTFSAV-IKSCAHLSILNLGRAVHCHVFVSG--YDSDLHVQAALVN 149 (580)
Q Consensus 75 ~~li~~~~~~g~~~~A-~~~-~~~m~~~g~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~ 149 (580)
.++.+++...|-..+. +.. ..++-+. + +..-+.++ --+....|+.+++..++...+..+ -.+.......+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3456677777765443 211 1233322 1 22222222 223556677777766655443311 0112223333444
Q ss_pred HHHhCCCHHHHHHHHccCCC-CC----------hhHHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCChhH--HH--HH
Q 046803 150 FYAKSNNVDVARKVFDRMPD-KS----------VVAWNSMISGYEQNGF-AKEAIGLFNLMRDFGVNPDSTT--CV--CV 213 (580)
Q Consensus 150 ~y~~~g~~~~A~~~f~~~~~-~~----------~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t--~~--~l 213 (580)
+...+|.-+++..++..... .+ +..-.++.-|.+-.|. -+++.+.+..+.... +... .. ++
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalAL 496 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGM 496 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 45555655556555443221 11 1112223333333332 235556555555421 2111 12 22
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-CCh-HHHH---HHHHHHHhcCC
Q 046803 214 LAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE-LNV-IAWT---AMISGYGMHGY 288 (580)
Q Consensus 214 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~ 288 (580)
...+...|+.+....++..+.+.. ..+..-..++.-++.-.|+.+.+..+.+.+.. .|. .-|. ++.-+|+-.|+
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 223345566666666666655432 22222222233333345666666666655542 222 2232 23345666677
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHH
Q 046803 289 GTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL-NEAYKFV 367 (580)
Q Consensus 289 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~ 367 (580)
.....++++.+... ...+......+.-+....|+.+.+.++++.+.+ ...|.+..-.++.-+....|.. .+|.+++
T Consensus 576 ~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 576 NSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 65555577766653 111222222222233345555555666655543 2234444444444444444443 4566666
Q ss_pred HhH
Q 046803 368 KDV 370 (580)
Q Consensus 368 ~~~ 370 (580)
...
T Consensus 653 ~~L 655 (963)
T 4ady_A 653 DPL 655 (963)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.09 E-value=7.5 Score=31.35 Aligned_cols=72 Identities=10% Similarity=0.091 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 341 LPGVEHHVCMVDLFGRAGLL---NEAYKFVKDVIGEKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 341 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
.|+..+--.+.-++.+.... .+++.++++.....|+ ......|.-++.+.|++++|.+..+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 35555555555666666544 3566666555544452 344556777889999999999999999999998754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.73 E-value=2.2 Score=45.37 Aligned_cols=49 Identities=6% Similarity=0.011 Sum_probs=23.1
Q ss_pred HHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHH
Q 046803 354 FGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEH 402 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 402 (580)
+...|+++-|+++-+++....|+ ..+|..|..+|...|+++.|+-.+.-
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 33444455555554444444442 44455555555555555554444433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.08 E-value=4 Score=33.96 Aligned_cols=24 Identities=13% Similarity=-0.122 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhH
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~ 370 (580)
+..+.+++...|.+..|...|+++
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 344555555566666665555444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.85 E-value=4.6 Score=33.55 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=15.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcCC
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIGE 373 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~~ 373 (580)
-+..+|.+.+++++|+.++ +.++.
T Consensus 127 kia~C~~~l~~~~~Ai~~L-e~Ip~ 150 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAIL-DGIPS 150 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHH-HTSCG
T ss_pred HHHHHHHHHCCHHHHHHHH-hcCCc
Confidence 3566667777777777777 55543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.14 E-value=1.8 Score=42.43 Aligned_cols=67 Identities=16% Similarity=0.026 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCC
Q 046803 380 WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ-----KGLKKHV 446 (580)
Q Consensus 380 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-----~~~~~~~ 446 (580)
...++.++...|+++++...++.++..+|-+...+..|+.+|.+.|+..+|.+.|+...+ .|+.|.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 344566667778888888888888888888777888888888888888888887777543 4666544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.81 E-value=6.6 Score=31.23 Aligned_cols=71 Identities=10% Similarity=0.098 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 342 PGVEHHVCMVDLFGRAGLL---NEAYKFVKDVIGEKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
|+..+--.+.-++.+.... .+++.++++.....|. ...+-.|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3333333344444444433 3455555444433442 344555666777777777777777777777777643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.37 E-value=17 Score=41.19 Aligned_cols=142 Identities=11% Similarity=0.045 Sum_probs=92.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC----C----------------
Q 046803 212 CVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE----L---------------- 271 (580)
Q Consensus 212 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~---------------- 271 (580)
.++..+...+..+.+.++... .+.+....-.+..+|..+|++++|.+.|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344555556666665554432 234444445667889999999999999987642 0
Q ss_pred ------ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--H--HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 046803 272 ------NVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN--V--TFVAVLSACAHAGLVQEGHRVFASMRQEYGLL 341 (580)
Q Consensus 272 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 341 (580)
-..-|..++..|-+.+.++.++++-+..++....-+. . .|..+..++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 0123566777888888888888887776653221121 1 4677888888999999998888776421 2
Q ss_pred CCHHHHHHHHHHHHHcCCHH
Q 046803 342 PGVEHHVCMVDLFGRAGLLN 361 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~~~ 361 (580)
-.......||..++..|.++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHhCCChh
Confidence 23556666777777666544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.96 E-value=13 Score=42.07 Aligned_cols=163 Identities=9% Similarity=-0.007 Sum_probs=89.5
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHH
Q 046803 146 ALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDL 225 (580)
Q Consensus 146 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 225 (580)
.++..+.+.+..+.|.++..-.++ +..+--.+..+|...|++++|.+.|++.-. |+..+..... ....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~----------~~~~ 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA----------VLRE 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCS----------SHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhh----------hhcc
Confidence 345555666677666665554443 333334566677788888888888876532 2222111000 0000
Q ss_pred HHHHHHHHHHcC--CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhcc----CCC----hHHHHHHHHHHHhcCChHHHHHH
Q 046803 226 GRWVHEFIVGQG--LDVNVVLATSLINMYARCGNVSKAREIFDMMS----ELN----VIAWTAMISGYGMHGYGTEAVEL 295 (580)
Q Consensus 226 a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~~ 295 (580)
...+.... ...-..-|.-++..+.+.|.++.+.++-.... ..+ ...|..+..++...|++++|...
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 00011100 01112345556666666776666665544322 122 12588888999999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 046803 296 FHRMRAHGVRPNNVTFVAVLSACAHAGLVQE 326 (580)
Q Consensus 296 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 326 (580)
+-.+.....+ ...+..|+...+..|..+.
T Consensus 961 L~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 961 LMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 8887764433 3456667776666665443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.90 E-value=10 Score=28.29 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||+..|-+|-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 55777777777776653 22222233445667899999999999888899999977754 356777788777777776
Q ss_pred CCCCCCHHHH
Q 046803 302 HGVRPNNVTF 311 (580)
Q Consensus 302 ~g~~pd~~t~ 311 (580)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 3444444
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.79 E-value=9.5 Score=28.42 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046803 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (580)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||+..|-++-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 55777777777776653 22222233445677899999999988888899999977654 467888888888877777
Q ss_pred CCCCCCHHHHH
Q 046803 302 HGVRPNNVTFV 312 (580)
Q Consensus 302 ~g~~pd~~t~~ 312 (580)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 34444443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.61 E-value=7.3 Score=30.93 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 288 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
+.-+..+-++.+....+.|+.......+.+|.+.+++..|.++|+.++.+.+. ....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHH
Confidence 34466777777778889999999999999999999999999999999875543 3556766654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.99 E-value=10 Score=36.95 Aligned_cols=69 Identities=10% Similarity=0.140 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH----hcCCCCCHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ----EYGLLPGVEH 346 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 346 (580)
..++..+...|++++|+..++.+... -+-+...+..++.++...|+..+|.+.|+...+ +.|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34566667777777777777777653 233566777777788888888888777776543 3466666543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.32 E-value=6.5 Score=29.45 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=35.0
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 371 IGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 371 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
+..-|++.+..+.+.+|++.+++..|.++++-+...-.+...+|-.+
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 35668899999999999999999999999988875443333445443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.47 E-value=35 Score=31.84 Aligned_cols=168 Identities=11% Similarity=0.150 Sum_probs=99.3
Q ss_pred HhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHH
Q 046803 244 LATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVEL----FHRMRAHGVRPNNVTFVAVLSACA 319 (580)
Q Consensus 244 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~a~~ 319 (580)
.|.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455666688888888888876542 3345566776655554 444455678888877777777665
Q ss_pred hcCCHH-HHHHHHHHhHH---hcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc---
Q 046803 320 HAGLVQ-EGHRVFASMRQ---EYGL--LPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKMH--- 390 (580)
Q Consensus 320 ~~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~~--- 390 (580)
....-+ .=.++.+.+.+ +.|- ..++.....+...|.+.|++.+|...|- .+..-|+..+..++.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i--~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM--LGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH--hCCCccHHHHHHHHHHHHHhcCC
Confidence 432111 11222233221 1222 2367778889999999999999999882 22211355555555444433
Q ss_pred CCchHHHHHHHHHHhcCCCCcchHHH-HHHHHHhcCChhHHHHHHHHHHh
Q 046803 391 KNFDLGVEVAEHLLSVEPENPGHYVM-LSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 391 g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
|...++ ..|.. .+--|...|+...|..+++...+
T Consensus 182 ~~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333322 22222 23346678899999999887654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.29 E-value=33 Score=33.75 Aligned_cols=93 Identities=11% Similarity=-0.035 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC-----CChHHHHHH--
Q 046803 209 TCVCVLAACAQLGDIDLGRWVHEFIVGQG--LDVNVVLATSLINMYARCGNVSKAREIFDMMSE-----LNVIAWTAM-- 279 (580)
Q Consensus 209 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-- 279 (580)
+...+...+.+.|+++.|.+++.++.... ...-...+-.++.++...+++..+...+.+... +|....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55566677777777777777777766532 223345556666666667777766666665531 222222211
Q ss_pred --HHHHHhcCChHHHHHHHHHHHh
Q 046803 280 --ISGYGMHGYGTEAVELFHRMRA 301 (580)
Q Consensus 280 --i~~~~~~g~~~~A~~~~~~m~~ 301 (580)
+..+...+++.+|-..|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122334566666666655543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.13 E-value=13 Score=33.61 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=28.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046803 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMR 335 (580)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 335 (580)
..+.|..++|++....-++.. +-|...=..++..++-.|+++.|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445566666666666555532 1233333445556666666666666555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 580 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 6e-04
Identities = 33/222 (14%), Positives = 70/222 (31%), Gaps = 13/222 (5%)
Query: 248 LINMYARCGNVSKAREIFDMMSELN---VIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304
L ++ G + A F+ L+ + A+ + + AV + R +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 305 RPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEA 363
+ GL+ + R+ L P + + + + G + EA
Sbjct: 235 NHAV-VHGNLACVYYEQGLIDLAIDTY---RRAIELQPHFPDAYCNLANALKEKGSVAEA 290
Query: 364 YKFVKDVIGEKPAPAVWTAMLGACKMH-KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422
+ P A L K N + V + L V PE + L+++
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 423 LAGRMDRVEVVRNIMIQKGLKKHVGYSTVEVDQKNYLFSMGD 464
G++ + ++ ++ ++ + N L M D
Sbjct: 351 QQGKLQEAL----MHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.001
Identities = 47/359 (13%), Positives = 103/359 (28%), Gaps = 23/359 (6%)
Query: 147 LVNFYAKSNNVDVARKVFDRM----PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202
L + ++ + + A + ++ PD + + S + Q + L
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-- 61
Query: 203 VNPDSTTCVCVLA-ACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKA 261
NP L + G + + + D + A
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 262 REIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHA 321
+ + + G + G ++A +PN + L +A
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 322 GLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380
E + L P ++ ++ + ++ A + + A + P AV
Sbjct: 182 --QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Query: 381 TAMLGACKMH-KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439
L DL ++ + ++P P Y L+N G + E N ++
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 440 ---KGLKKHVGYSTVEVDQKNY-----LFSMGDKSHPNTNEIYQYLDEL---MGRCREA 487
+ ++ +Q N L+ + P + L + G+ +EA
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 580 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.14 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.9 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.83 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.78 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.73 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.71 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.71 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.64 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.6 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.54 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.53 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.43 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.4 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.38 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.33 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.31 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.27 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.25 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.19 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.16 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.1 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.09 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.05 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.99 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.89 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.82 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.82 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.44 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.35 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.34 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.3 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.29 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.23 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.56 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.18 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.01 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.58 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.26 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.41 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.21 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.04 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.96 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.9e-22 Score=198.72 Aligned_cols=370 Identities=12% Similarity=0.040 Sum_probs=303.4
Q ss_pred HHhccCChhHHHHHHccCCC---CChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHH
Q 046803 49 LVCDAGFITYAQRIFFCIPS---PDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLG 125 (580)
Q Consensus 49 ~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 125 (580)
.+.+.|++++|.+.|+++.+ .+..+|..+...|.+.|++++|+..|++.++... -+..++..+...+...|++++|
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcccccc
Confidence 34588999999999987642 3677899999999999999999999999887532 2556788888889999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccC---CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046803 126 RAVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRM---PDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFG 202 (580)
Q Consensus 126 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 202 (580)
...+..+.+.... +..........+...+....+....... .......+..........+....+...+.+.....
T Consensus 87 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 87 IEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC
Confidence 9999999887643 3344444444444444444444433322 22455566667777788888999998888887652
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHH
Q 046803 203 VNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAM 279 (580)
Q Consensus 203 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 279 (580)
+-+...+..+...+...|+++.|...+...++.. +.+...+..+...|...|++++|...|+...+ .+...|..+
T Consensus 166 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 243 (388)
T d1w3ba_ 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHH
Confidence 3355677888888999999999999999998875 56778899999999999999999999988764 566788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAG 358 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 358 (580)
...+.+.|++++|+..|++..+. .|+ ..++..+..++...|++++|.+.++.... ..+.+...+..+...+.+.|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCC
Confidence 99999999999999999999884 444 56788889999999999999999999875 33456788888999999999
Q ss_pred CHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046803 359 LLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGR 426 (580)
Q Consensus 359 ~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 426 (580)
++++|++.|++.+...|+ +.+|..+..++...|++++|+..|+++++++|+++.+|..|+.+|.+.|+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999998995 78899999999999999999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.8e-21 Score=192.86 Aligned_cols=356 Identities=11% Similarity=0.039 Sum_probs=297.3
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 046803 77 LIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVHCHVFVSGYDSDLHVQAALVNFYAKSNN 156 (580)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 156 (580)
+...+.+.|++++|++.|+++.+... -+...+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 34567788999999999999987532 256677888888999999999999999999886 4467889999999999999
Q ss_pred HHHHHHHHccCCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 046803 157 VDVARKVFDRMPD---KSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFI 233 (580)
Q Consensus 157 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 233 (580)
+++|...+..... .+...+..........+....+........... ..+..............+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 9999999987754 344556666666667777777777766665543 344455555666667778888888888887
Q ss_pred HHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 046803 234 VGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310 (580)
Q Consensus 234 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 310 (580)
.... +.+...+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|+..+++..... ..+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 7765 56678888899999999999999999987763 456789999999999999999999999998753 335667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHH
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACK 388 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~ 388 (580)
+..+..++...|++++|...|+++.+ +.| +...+..+...+...|++++|.+.++..+...| +...+..+...+.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 78888899999999999999999875 335 578889999999999999999999988876666 5788999999999
Q ss_pred hcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 389 MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 389 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
..|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7e-15 Score=141.55 Aligned_cols=242 Identities=12% Similarity=-0.020 Sum_probs=172.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcC
Q 046803 177 SMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG 256 (580)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 256 (580)
.....+.+.|++++|+..|++..+.. +-+..+|..+..++...|++++|...+.++++.. |.+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45556777788888888887777642 2235567777777777777777777777777664 445666666777777777
Q ss_pred CHHHHHHHHHhccCCChH---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046803 257 NVSKAREIFDMMSELNVI---AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFAS 333 (580)
Q Consensus 257 ~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 333 (580)
++++|.+.++.....+.. .+....... ...+.......+..+...+...++...|..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 777777776665431110 000000000 000000111122233445567788888888
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc
Q 046803 334 MRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG 412 (580)
Q Consensus 334 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 412 (580)
..+...-.++...+..+...+...|++++|+..+++.+...|+ ..+|..+...+...|++++|++.++++++++|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7755444456778888999999999999999999888877785 888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 413 HYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 413 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
++..++.+|.+.|++++|.+.+++..+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.2e-14 Score=139.98 Aligned_cols=268 Identities=10% Similarity=-0.011 Sum_probs=197.9
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCC
Q 046803 146 ALVNFYAKSNNVDVARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGD 222 (580)
Q Consensus 146 ~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 222 (580)
.....|.+.|++++|...|++..+ | +..+|..+...|...|++++|+..|.+..+.. +-+...+..+..++...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 356678899999999999998754 3 57799999999999999999999999998753 2356688888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046803 223 IDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAH 302 (580)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 302 (580)
+++|.+.+..+.+.. +.............. ..+.......+..+...+...+|...|.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYT-PAYAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTS-TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc-cchHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999998764 211111111100000 001111111222334455677888888887763
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHH
Q 046803 303 G-VRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVW 380 (580)
Q Consensus 303 g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 380 (580)
. -.++...+..+...+...|++++|...|+...... +-+...|..+...|.+.|++++|.+.|++++...|+ +.+|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 2 23456677888889999999999999999987532 235778889999999999999999999988888885 8889
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch-----------HHHHHHHHHhcCChhHHHHH
Q 046803 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH-----------YVMLSNIYALAGRMDRVEVV 433 (580)
Q Consensus 381 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~y~~~g~~~~a~~~ 433 (580)
..+..+|...|++++|+..|++++++.|++... +..+..++...|+.+.+...
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999988876553 34466667677777655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1.2e-09 Score=104.94 Aligned_cols=259 Identities=12% Similarity=0.013 Sum_probs=174.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCh------hHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CC---CcHHHhhH
Q 046803 179 ISGYEQNGFAKEAIGLFNLMRDFGVNPDS------TTCVCVLAACAQLGDIDLGRWVHEFIVGQG--LD---VNVVLATS 247 (580)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~ 247 (580)
...+...|++++|++++++..+. .|+. ..+..+..++...|++++|...+....+.. .. .....+..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 34456667777777777666653 2221 244455566666777777777776665421 01 11234455
Q ss_pred HhhHhhhcCCHHHHHHHHHhccC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCHHHHH
Q 046803 248 LINMYARCGNVSKAREIFDMMSE-------L----NVIAWTAMISGYGMHGYGTEAVELFHRMRAHG----VRPNNVTFV 312 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~pd~~t~~ 312 (580)
+...|...|++..|...+..... + ....+..+...+...|+++.+...+.+..... ......++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 66677777777777777765431 1 11345566677888888988888888876532 222234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-----HHHHHH
Q 046803 313 AVLSACAHAGLVQEGHRVFASMRQEYGLLPG-----VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-----PAVWTA 382 (580)
Q Consensus 313 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~ 382 (580)
.....+...++...+...+............ ...+..+...+...|++++|...+++.+...|. ...+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 6666777888888888887776543322221 334566677888999999999999777754432 445677
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhc------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 383 MLGACKMHKNFDLGVEVAEHLLSV------EPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 383 ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+..++...|++++|...+++++.. .|....++..++.+|...|++++|.+.+++..+
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999999998742 245566888899999999999999999988765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6.1e-10 Score=105.68 Aligned_cols=219 Identities=11% Similarity=0.053 Sum_probs=140.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcC-CHHHHHHHHHhccC---CChHHHHHHHHHHHh
Q 046803 210 CVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCG-NVSKAREIFDMMSE---LNVIAWTAMISGYGM 285 (580)
Q Consensus 210 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 285 (580)
++.+...+.+.+..++|.+++..+++.. |.+..+|+....++.+.| ++++|...++...+ .+..+|+.+...+..
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh
Confidence 3334444455555556666666555554 445555566555555544 36666666665542 345667777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCC----
Q 046803 286 HGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGL---- 359 (580)
Q Consensus 286 ~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~---- 359 (580)
.|++++|+..++++.+. .| +...|..+...+.+.|++++|.+.++.+.+. .| +...|+.+..++.+.+.
T Consensus 125 l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred hccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchh
Confidence 77777777777777763 33 4566777777777777777777777777642 34 45566666666555554
Q ss_pred --HHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc--chHHHHHHHHHhc--CChhHHHH
Q 046803 360 --LNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP--GHYVMLSNIYALA--GRMDRVEV 432 (580)
Q Consensus 360 --~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~y~~~--g~~~~a~~ 432 (580)
+++|++.+.+++...| +...|..+...+.. ...+++...++++.++.|... ..+..++.+|... +..+.+..
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6788988888888888 57788888776654 446888899999988887643 4455677777543 44444444
Q ss_pred HHH
Q 046803 433 VRN 435 (580)
Q Consensus 433 ~~~ 435 (580)
.++
T Consensus 279 ~~~ 281 (315)
T d2h6fa1 279 ILN 281 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=2.7e-10 Score=104.93 Aligned_cols=222 Identities=10% Similarity=-0.087 Sum_probs=139.0
Q ss_pred ChhHHHHHHHHHHHCCC-CC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHH
Q 046803 187 FAKEAIGLFNLMRDFGV-NP--DSTTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKARE 263 (580)
Q Consensus 187 ~~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 263 (580)
+.+.|+.-+++...... .+ ...++..+..++.+.|++++|...|...++.. |.++.+++.+..+|.+.|++++|.+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34455555666554321 11 12356666777788888888888888888765 5677788888888888888888888
Q ss_pred HHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 046803 264 IFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGL 340 (580)
Q Consensus 264 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 340 (580)
.|+++.+ .+..+|..+...|...|++++|+..|++..+.. +.+......+..++.+.+..+....+...... .
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 168 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---S 168 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---S
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---c
Confidence 8887764 345678888888888888888988888887742 12333333344445555555555554444432 1
Q ss_pred CCCHHHHHHHHHHHHHc----CCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchH
Q 046803 341 LPGVEHHVCMVDLFGRA----GLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHY 414 (580)
Q Consensus 341 ~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 414 (580)
.+....++ ++..+... +..+.+...+.......|+ ..+|..+...+...|++++|...|+++++.+|++...|
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 22222222 22222222 2233333333222222333 45677788899999999999999999999999875444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.1e-08 Score=98.10 Aligned_cols=94 Identities=14% Similarity=0.182 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHHh---cCCCCC-HHHHHH
Q 046803 277 TAMISGYGMHGYGTEAVELFHRMRAHGVRPN---NVTFVAVLSACAHAGLVQEGHRVFASMRQE---YGLLPG-VEHHVC 349 (580)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~ 349 (580)
..+...+...|++++|...+++........+ ...+..+..++...|++++|...++.+... .+..|+ ...+..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 3344444455555555555554433211111 123333444555555555555555544321 122222 334444
Q ss_pred HHHHHHHcCCHHHHHHHHHhH
Q 046803 350 MVDLFGRAGLLNEAYKFVKDV 370 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~ 370 (580)
+..+|.+.|++++|.+.++++
T Consensus 297 la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 455555555555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=1.1e-10 Score=112.21 Aligned_cols=232 Identities=9% Similarity=-0.062 Sum_probs=172.6
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCCCcHHHhh-HHhhHhhhcCCHH
Q 046803 183 EQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLG--DIDLGRWVHEFIVGQGLDVNVVLAT-SLINMYARCGNVS 259 (580)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~y~~~g~~~ 259 (580)
...|++++|+.+++...+.. +-+...+.....++...+ +++++...+..+.+.. +.+...+. .....+...|..+
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence 44556778888888887753 234556666666666655 4788888888888875 44455543 4557777889999
Q ss_pred HHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 046803 260 KAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQ 336 (580)
Q Consensus 260 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 336 (580)
+|...++...+ .+..+|+.+...+.+.|++++|...+++..+. .|+. ..+...+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999998875 45678998999999999988887666554442 2222 1233344556667777777777764
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHH
Q 046803 337 EYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYV 415 (580)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 415 (580)
..+++...+..++..+...|+.++|.+.+.+.+...|+ ..+|..+...+...|++++|+..++++++++|.+...|.
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 33344555666778888899999999999899988884 778999999999999999999999999999999888888
Q ss_pred HHHHHHHh
Q 046803 416 MLSNIYAL 423 (580)
Q Consensus 416 ~l~~~y~~ 423 (580)
.|...+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 88777664
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=5e-10 Score=106.25 Aligned_cols=193 Identities=11% Similarity=0.085 Sum_probs=163.9
Q ss_pred HHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 046803 242 VVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHG-YGTEAVELFHRMRAHGVRP-NNVTFVAVLS 316 (580)
Q Consensus 242 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~ 316 (580)
..+++.+...+.+.+..++|.++++++.+ .+..+|+.....+...| ++++|+..+++..+. .| +..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhH
Confidence 45677778888999999999999999875 45678999998988876 589999999999884 44 4578888889
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCC--
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKN-- 392 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~-- 392 (580)
.+...|++++|...++.+.+. .| +...|..+...+.+.|++++|++.+++++...| +...|+.+...+...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhh---hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence 999999999999999999853 45 588999999999999999999999999998888 58889888877776665
Q ss_pred ----chHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 393 ----FDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 393 ----~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+++|+..+.++++++|.+...+..++.++...| .+++.+.++...+.
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 578999999999999999999999988876654 57888888877653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=1.1e-08 Score=96.51 Aligned_cols=187 Identities=11% Similarity=0.079 Sum_probs=133.9
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccC--C-C-hHHHHHHHHHHHhcCChHHHHHHHH
Q 046803 222 DIDLGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSE--L-N-VIAWTAMISGYGMHGYGTEAVELFH 297 (580)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 297 (580)
..+++..+++..++...+.+...+..++..+.+.|+++.|..+|+++.+ | + ...|...+....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3467778888887765566677778888888888888888888887654 2 2 3468888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCC---
Q 046803 298 RMRAHGVRPNNVTFVAVLS-ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGE--- 373 (580)
Q Consensus 298 ~m~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 373 (580)
++.+.+.. +...|..... -+...|+.+.|..+|+.+.+.+ +.+...|...++.+.+.|+++.|..+|++++..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 88775332 3333333332 2334578888888888887643 334677888888888888888888888777633
Q ss_pred CCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 046803 374 KPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENP 411 (580)
Q Consensus 374 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 411 (580)
.|+ ...|...+.--..+|+.+.+..+++++.+..|.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 332 45788888877888888888888888887777653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=9.6e-09 Score=96.99 Aligned_cols=184 Identities=11% Similarity=0.040 Sum_probs=147.5
Q ss_pred cCCHHHHHHHHHhccC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046803 255 CGNVSKAREIFDMMSE----LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRV 330 (580)
Q Consensus 255 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 330 (580)
.+..++|..+|++..+ .+...|...+..+...|+.++|..+|+++++.........|...+..+.+.|+.+.|+++
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 3456888889887653 456678888999999999999999999998753333345788999999999999999999
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 046803 331 FASMRQEYGLLPGVEHHVCMVDLF-GRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEP 408 (580)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 408 (580)
|+.+.+. .+.+...|...+... ...|+.+.|..+|++++...| ++..|...+......|+++.|..+|+++++..|
T Consensus 157 ~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9998753 223445555555443 346899999999988887667 478899999999999999999999999999877
Q ss_pred CCcc----hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 409 ENPG----HYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 409 ~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.++. .|...+..-...|+.+.+.++.+++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6543 5677777778889999999999998764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=3.7e-09 Score=97.04 Aligned_cols=213 Identities=11% Similarity=-0.013 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHcCC-CC--cHHHhhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 046803 224 DLGRWVHEFIVGQGL-DV--NVVLATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFH 297 (580)
Q Consensus 224 ~~a~~~~~~~~~~~~-~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 297 (580)
+.+..-+.++..... .+ ...++..+..+|.+.|++++|.+.|++..+ .++.+|+.+..+|.+.|++++|+..|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 445555566664421 11 345777888999999999999999998774 567899999999999999999999999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC
Q 046803 298 RMRAHGVRPN-NVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA 376 (580)
Q Consensus 298 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 376 (580)
+..+. .|+ ..++..+..++...|++++|...|+...+.. +.+......+...+.+.+..+.+..+........++
T Consensus 96 ~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 96 SVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 99984 444 5678888899999999999999999988642 224444444555556666655555555333322222
Q ss_pred HHHHHHHHHHHH----hcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 377 PAVWTAMLGACK----MHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 377 ~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
...+. ++..+. ..+..+.+...+.......|....+|..|+.+|...|++++|.+.+++....+
T Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 172 QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222 122221 12223333444444444556666788899999999999999999999988754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=1.5e-09 Score=103.98 Aligned_cols=228 Identities=6% Similarity=-0.059 Sum_probs=150.2
Q ss_pred CCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCChhHHH-HHHHHHHhCCChHHHHH
Q 046803 155 NNVDVARKVFDRMPD---KSVVAWNSMISGYEQNGF--AKEAIGLFNLMRDFGVNPDSTTCV-CVLAACAQLGDIDLGRW 228 (580)
Q Consensus 155 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~a~~ 228 (580)
|++++|+..|+...+ ++...|..+..++...++ +++|+..+.++.+.. +++...+. .....+...+..+.|..
T Consensus 87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHH
Confidence 345556666655432 355566666666655543 677777777776642 22334433 33455566777777887
Q ss_pred HHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046803 229 VHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNN 308 (580)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 308 (580)
.+..+++.. +.+...++.+..+|.+.|++++|...+....+.+.... .....+...+..+++...+....... +++.
T Consensus 166 ~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~ 242 (334)
T d1dcea1 166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPL 242 (334)
T ss_dssp HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCS
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC-cchh
Confidence 777777765 55677777788888888887777665554443222111 22333455667777888888777643 2334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 046803 309 VTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGA 386 (580)
Q Consensus 309 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~ 386 (580)
..+..+...+...++.++|...+....+ ..| +...+..++..|.+.|++++|.+.+++++...|+ ...|..|...
T Consensus 243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~ 319 (334)
T d1dcea1 243 FRCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 319 (334)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence 4555666677778888999888887753 345 4677888899999999999999999999888885 6667777655
Q ss_pred HHh
Q 046803 387 CKM 389 (580)
Q Consensus 387 ~~~ 389 (580)
+..
T Consensus 320 ~~~ 322 (334)
T d1dcea1 320 FLL 322 (334)
T ss_dssp HHH
T ss_pred HhH
Confidence 543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.83 E-value=1e-08 Score=89.99 Aligned_cols=114 Identities=5% Similarity=-0.131 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHH
Q 046803 306 PNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAML 384 (580)
Q Consensus 306 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll 384 (580)
|+...+......+.+.|++++|...|+++.+. .+.+...|..+..+|.+.|++++|+..|++++.+.|+ +.+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 44455555555566666666666666555532 1123555555556666666666666666555555553 55555566
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 385 GACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
.++...|++++|+..|++++++.|++...+...+..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 6666666666666666666555555444444433333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=2.1e-08 Score=79.23 Aligned_cols=91 Identities=10% Similarity=0.137 Sum_probs=72.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 428 (580)
-...+.+.|++++|+..|++.+...| ++..|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 45567778888888888877777777 47778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhC
Q 046803 429 RVEVVRNIMIQK 440 (580)
Q Consensus 429 ~a~~~~~~m~~~ 440 (580)
+|...+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=4.5e-08 Score=77.30 Aligned_cols=107 Identities=15% Similarity=0.088 Sum_probs=91.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCC
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKN 392 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~ 392 (580)
-...+...|++++|...|+...+. -+.+...|..+..+|...|++++|++.+.+++...| ++..|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 456778889999999999998853 233577888999999999999999999988888888 58889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 393 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
+++|+..++++++++|+++..+..+.++-.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999888877776543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=3e-07 Score=79.54 Aligned_cols=86 Identities=12% Similarity=-0.037 Sum_probs=58.9
Q ss_pred hhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 046803 249 INMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRP-NNVTFVAVLSACAHAGLVQEG 327 (580)
Q Consensus 249 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a 327 (580)
...+...|+++.|.+.|.++..++..+|..+...|...|++++|++.|++.++. .| +...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 334566677777777777777777777777777777777777777777777763 33 345666666677777777777
Q ss_pred HHHHHHhHH
Q 046803 328 HRVFASMRQ 336 (580)
Q Consensus 328 ~~~~~~~~~ 336 (580)
...|++...
T Consensus 90 ~~~~~kAl~ 98 (192)
T d1hh8a_ 90 IKDLKEALI 98 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.71 E-value=2.4e-08 Score=78.16 Aligned_cols=90 Identities=11% Similarity=0.028 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 046803 349 CMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRM 427 (580)
Q Consensus 349 ~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 427 (580)
.+...+.+.|++++|+..|++.+...|+ +.+|..+..++...|++++|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4667788999999999999998988884 889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 046803 428 DRVEVVRNIMI 438 (580)
Q Consensus 428 ~~a~~~~~~m~ 438 (580)
++|.+.+++..
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=1.2e-07 Score=82.14 Aligned_cols=120 Identities=12% Similarity=0.044 Sum_probs=91.3
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchH
Q 046803 317 ACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDL 395 (580)
Q Consensus 317 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~ 395 (580)
.+...|++++|.+.|..+. +|+...|..+..+|...|++++|++.|++++...|+ +..|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 4566778888887776542 356667777888888888888888888888877774 7778888888888888888
Q ss_pred HHHHHHHHHhcCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 396 GVEVAEHLLSVEPENP----------------GHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 396 a~~~~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
|+..|+++++..|.++ .++..++.+|.+.|++++|.+.++...+..
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888888876554432 345678888999999999999888876643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.71 E-value=5.1e-08 Score=85.34 Aligned_cols=98 Identities=9% Similarity=-0.023 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046803 342 PGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNI 420 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 420 (580)
|+...+...+..|.+.|++++|++.|++++...| ++..|..+..+|.+.|++++|+..|+++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4555555666677777777777777766666666 366677777777777777777777777777777777777777777
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 046803 421 YALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 421 y~~~g~~~~a~~~~~~m~~ 439 (580)
|...|++++|...+++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777777776554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=4.5e-07 Score=84.31 Aligned_cols=205 Identities=10% Similarity=-0.006 Sum_probs=96.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHhhHHhhH
Q 046803 177 SMISGYEQNGFAKEAIGLFNLMRDF----GVNPD-STTCVCVLAACAQLGDIDLGRWVHEFIVGQGLDVNVVLATSLINM 251 (580)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 251 (580)
.....|...|++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|...+....+.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~--------------- 106 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--------------- 106 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH---------------
Confidence 3466677777777777777666432 11111 124444444444455555544444433321
Q ss_pred hhhcCCHHHHHHHHHhccCCChHHHHHHHHHHH-hcCChHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHH
Q 046803 252 YARCGNVSKAREIFDMMSELNVIAWTAMISGYG-MHGYGTEAVELFHRMRA----HGVRPN-NVTFVAVLSACAHAGLVQ 325 (580)
Q Consensus 252 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~----~g~~pd-~~t~~~ll~a~~~~g~~~ 325 (580)
+.+.|+...+ ..++..+...|. ..|++++|++.|++..+ .+..+. ..++..+...+...|+++
T Consensus 107 ~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~ 175 (290)
T d1qqea_ 107 FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (290)
T ss_dssp HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhhcccchhH-----------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHH
Confidence 1111111111 123333444443 34666666666665543 111111 134555666666777777
Q ss_pred HHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC------HHHHHHHHHHHHhc--CC
Q 046803 326 EGHRVFASMRQEYGLLPG-----VEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA------PAVWTAMLGACKMH--KN 392 (580)
Q Consensus 326 ~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~ll~~~~~~--g~ 392 (580)
+|...|+++.......+. ...+...+..+...|+++.|...+++.....|. ......++.++... +.
T Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~ 255 (290)
T d1qqea_ 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (290)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHH
Confidence 777777666543211111 122333444555667777777777666655543 12234445554432 23
Q ss_pred chHHHHHHHHHHhcC
Q 046803 393 FDLGVEVAEHLLSVE 407 (580)
Q Consensus 393 ~~~a~~~~~~~~~~~ 407 (580)
+++|+..|+++.+++
T Consensus 256 ~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 256 LSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHhhcC
Confidence 555555555444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.4e-07 Score=79.14 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=70.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMD 428 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 428 (580)
....|.+.|++++|+..|++++...|+ ...|..+...|...|++++|+..|+++++++|.++.+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 445667788888888888777777774 6777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhC
Q 046803 429 RVEVVRNIMIQK 440 (580)
Q Consensus 429 ~a~~~~~~m~~~ 440 (580)
+|.+.+++..+.
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888888777653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=1.7e-07 Score=87.36 Aligned_cols=190 Identities=9% Similarity=-0.015 Sum_probs=130.8
Q ss_pred HhhHhhhcCCHHHHHHHHHhccC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHH
Q 046803 248 LINMYARCGNVSKAREIFDMMSE-----LN----VIAWTAMISGYGMHGYGTEAVELFHRMRAH----GVR-PNNVTFVA 313 (580)
Q Consensus 248 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-pd~~t~~~ 313 (580)
..++|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+. |.. ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 35667888888888888877653 12 357888888999999999999999876642 111 11245566
Q ss_pred HHHHHH-hcCCHHHHHHHHHHhHHhc---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC--------HHHH
Q 046803 314 VLSACA-HAGLVQEGHRVFASMRQEY---GLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA--------PAVW 380 (580)
Q Consensus 314 ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~ 380 (580)
+...|. ..|++++|.+.|++..+-. +..+ ...++..+...|...|++++|.+.|++.+...|+ ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 4699999999999876432 1112 1456788899999999999999999877643332 1234
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc-----hHHHHHHHHHh--cCChhHHHHHHHHH
Q 046803 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPG-----HYVMLSNIYAL--AGRMDRVEVVRNIM 437 (580)
Q Consensus 381 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~y~~--~g~~~~a~~~~~~m 437 (580)
...+..+...|+++.|...+++..+.+|..+. ....|+.+|.. .+++++|...|+.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45566777889999999999999999876433 33456666654 35678888777643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=2.2e-07 Score=77.86 Aligned_cols=118 Identities=8% Similarity=-0.054 Sum_probs=98.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCC
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKN 392 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~ 392 (580)
-.+.|.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|.+.|++++...|+ ..+|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 4557788999999999999988631 235888899999999999999999999988888885 7889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcchHHHHHHHHH--hcCChhHHHHH
Q 046803 393 FDLGVEVAEHLLSVEPENPGHYVMLSNIYA--LAGRMDRVEVV 433 (580)
Q Consensus 393 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~--~~g~~~~a~~~ 433 (580)
+++|+..++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999988877766543 44456555544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=4.9e-07 Score=76.48 Aligned_cols=135 Identities=10% Similarity=0.022 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 046803 274 IAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDL 353 (580)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 353 (580)
..+......+.+.|++++|+..|++.+..- |... +....-......+ ....|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~------------~~~~~~~~~~~~~--------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYES------------SFSNEEAQKAQAL--------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCC------------CCCSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcc------------ccchHHHhhhchh--------HHHHHHHHHHH
Confidence 345555667777788888888887776521 1100 0000000111111 12356778889
Q ss_pred HHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 046803 354 FGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRV 430 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 430 (580)
|.+.|++++|+..+++++...| ++..|..+..++...|++++|+..|+++++++|+|+.+...+..+..+.+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888 5889999999999999999999999999999999999999998888766655544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=9.3e-08 Score=75.73 Aligned_cols=105 Identities=11% Similarity=0.045 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHhHcCCCCCH---HHHHHHHH
Q 046803 312 VAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLL---NEAYKFVKDVIGEKPAP---AVWTAMLG 385 (580)
Q Consensus 312 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~p~~---~~~~~ll~ 385 (580)
..+++.+...+++++|.+.|+...+. -+.+..++..+..++.+.++. ++|++++++.+...|++ .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35666777777788888887777642 223466666777777664443 45777777776665543 35667777
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCcchHHHHH
Q 046803 386 ACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLS 418 (580)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 418 (580)
+|.+.|++++|++.|+++++++|++..+...+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 777778888888888888877777765554443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.8e-07 Score=72.88 Aligned_cols=90 Identities=9% Similarity=-0.040 Sum_probs=45.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc---CCchHHHHHHHHHHhcCCCC--cchHHHHHHHHHh
Q 046803 350 MVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH---KNFDLGVEVAEHLLSVEPEN--PGHYVMLSNIYAL 423 (580)
Q Consensus 350 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~ 423 (580)
+++.+...+++++|.+.|++++...| ++.++..+..++.+. +++++|+.+++++++.+|.+ ..++..|+.+|.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 44444555555555555555554444 244555555554432 23334555555555544432 2244555555555
Q ss_pred cCChhHHHHHHHHHHh
Q 046803 424 AGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 424 ~g~~~~a~~~~~~m~~ 439 (580)
.|++++|.+.++++.+
T Consensus 85 ~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQ 100 (122)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHH
Confidence 5555555555555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.43 E-value=2.2e-06 Score=72.22 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYAL 423 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 423 (580)
..|..+..+|.+.|++++|+..+++.+...| +...|..+..++...|++++|+..|+++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3566788889999999999999999998888 588899999999999999999999999999999999999988888776
Q ss_pred cCChh-HHHHHHHHHH
Q 046803 424 AGRMD-RVEVVRNIMI 438 (580)
Q Consensus 424 ~g~~~-~a~~~~~~m~ 438 (580)
.+... ...+++..|.
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 66554 3445555554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2.1e-06 Score=72.43 Aligned_cols=63 Identities=10% Similarity=0.043 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...++...+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 457778889999999999999999999999999999999999999999999999999999874
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.38 E-value=2.3e-06 Score=70.80 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.+|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356677778888888888888888888888888888888888888888888888888887663
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=6.9e-07 Score=71.51 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcc-------hHHHHH
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPG-------HYVMLS 418 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 418 (580)
+..+...|.+.|++++|++.|++++...|+ ..+|..+..+|.+.|++++|+..++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445778899999999999999999988884 888999999999999999999999999999988765 455677
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 046803 419 NIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 419 ~~y~~~g~~~~a~~~~~~m~~ 439 (580)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888999999999987754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.33 E-value=2.2e-06 Score=72.25 Aligned_cols=133 Identities=9% Similarity=0.033 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH
Q 046803 275 AWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDL 353 (580)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 353 (580)
.+......+...|++++|+..|++.++. ...........+.. .+.| ....|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHH
Confidence 3455566777888888888888876541 01011111111110 1123 35577788899
Q ss_pred HHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 046803 354 FGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDR 429 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 429 (580)
|.+.|++++|+..+++++...|+ +..|..+..++...|++++|+..|+++++++|+++.+...|..++.+.....+
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999995 88999999999999999999999999999999999988888877765544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.31 E-value=5.8e-06 Score=68.25 Aligned_cols=129 Identities=8% Similarity=-0.112 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 273 VIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
...+......+.+.|++.+|+..|.+.+..- |... ...-......... ....+|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKN--------IEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHH
Confidence 3456667778888899999998888877521 1100 0000000000000 12346777889
Q ss_pred HHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 353 LFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
+|.+.|++++|++.+++++...| +..+|..+..++...|++++|+..|+++++++|+|+.+...+..+..
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999998888 58899999999999999999999999999999999888777666544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=3.7e-07 Score=91.86 Aligned_cols=75 Identities=9% Similarity=0.011 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046803 347 HVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIY 421 (580)
Q Consensus 347 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 421 (580)
+..+.+++...|++++|...|++++...|+ ...|+.|...+...|+..+|+..|.+++...|+.+.++..|...|
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 334444444445555555555444444443 344444444444445555555555555544444444444444444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.27 E-value=0.00044 Score=62.29 Aligned_cols=228 Identities=10% Similarity=-0.009 Sum_probs=117.5
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCcHHHhh
Q 046803 171 SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLAT 246 (580)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (580)
|+..+..|...+.+.+++++|++.|++..+.| |...+..+...+.. ..+...+...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 44566677777777788888888888877765 44455555555544 345666666666665554 112222
Q ss_pred HHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcC
Q 046803 247 SLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACA----HAG 322 (580)
Q Consensus 247 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~----~~g 322 (580)
.|...+.... ....+.+.|...+++..+.|.. .....+...+. ...
T Consensus 75 ~l~~~~~~~~---------------------------~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~ 124 (265)
T d1ouva_ 75 LLGNLYYSGQ---------------------------GVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTR 124 (265)
T ss_dssp HHHHHHHHTS---------------------------SSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCC
T ss_pred cccccccccc---------------------------ccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccc
Confidence 2222222100 0122334444444444443321 11111111111 122
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCCch
Q 046803 323 LVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR----AGLLNEAYKFVKDVIGEKPAPAVWTAMLGACKM----HKNFD 394 (580)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~ 394 (580)
....+...+..... ..+...+..|...|.. ..+...+...++.... ..++.....|...+.. ..+++
T Consensus 125 ~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~-~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 125 DFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-LKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhcccc-ccccccccchhhhcccCcccccchh
Confidence 34444444444332 1233444445554443 3445555555533332 2245555555555543 45777
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 046803 395 LGVEVAEHLLSVEPENPGHYVMLSNIYAL----AGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 395 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~ 441 (580)
.|+..|+++.+.+ ++..+..|+.+|.+ ..+.++|.+.|++..+.|
T Consensus 200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 7888888777764 35677777777765 336777888888776655
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.25 E-value=5.5e-06 Score=69.73 Aligned_cols=65 Identities=9% Similarity=-0.012 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 376 APAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 376 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 35668888999999999999999999999999999999999999999999999999999999874
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.19 E-value=0.0019 Score=57.84 Aligned_cols=228 Identities=13% Similarity=0.024 Sum_probs=130.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHccCCC-CChhHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHHHHHH
Q 046803 140 DLHVQAALVNFYAKSNNVDVARKVFDRMPD-KSVVAWNSMISGYEQ----NGFAKEAIGLFNLMRDFGVNPDSTTCVCVL 214 (580)
Q Consensus 140 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 214 (580)
|+..+..|...+.+.+++++|.+.|++..+ .+..++..|...|.. ..+...|...+......+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 455677788888899999999999998764 467777778888876 668899999999888765 333334443
Q ss_pred HHHHh----CCChHHHHHHHHHHHHcCCCCcHHHhhHHhhHhh----hcCCHHHHHHHHHhccC-CChHHHHHHHHHHHh
Q 046803 215 AACAQ----LGDIDLGRWVHEFIVGQGLDVNVVLATSLINMYA----RCGNVSKAREIFDMMSE-LNVIAWTAMISGYGM 285 (580)
Q Consensus 215 ~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 285 (580)
..+.. ..+.+.|...+....+.|.. .. ...+...+. .......|...+..... .+...+..+...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~-~a--~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA-EG--CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh-hH--HHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 33332 45677888888888777632 11 112222222 23344444444444332 344444444444432
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHH
Q 046803 286 HGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGR----AGLLN 361 (580)
Q Consensus 286 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 361 (580)
.. + ...+...+...++...+. .+......+...|.. ..+++
T Consensus 155 ~~---------------~----------------~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 155 GR---------------G----------------TPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp TS---------------S----------------SCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred CC---------------C----------------cccccccchhhhhccccc----cccccccchhhhcccCcccccchh
Confidence 10 0 122333344444433321 123333334434433 45677
Q ss_pred HHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCC
Q 046803 362 EAYKFVKDVIGEKPAPAVWTAMLGACKM----HKNFDLGVEVAEHLLSVEPE 409 (580)
Q Consensus 362 ~A~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~ 409 (580)
+|...|++..... ++..+..|...|.. .++.++|.+.|+++.+.+..
T Consensus 200 ~A~~~~~~aa~~g-~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 200 EALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhHhhhhccc-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 7777776555432 45555566666654 34778888888888776643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.16 E-value=2.8e-05 Score=65.10 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 378 AVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 378 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
.+|..+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346678888999999999999999999999999999999999999999999999999998874
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.10 E-value=8.9e-06 Score=62.98 Aligned_cols=88 Identities=14% Similarity=-0.020 Sum_probs=63.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC
Q 046803 314 VLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHK 391 (580)
Q Consensus 314 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g 391 (580)
+...+.+.|++++|...|++..+. .| +...|..+..++.+.|++++|+..|++++...|+ ..+|..+...|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc---ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 344566777777777777777653 24 4667777777777788888888877777777774 777777777888888
Q ss_pred CchHHHHHHHHHH
Q 046803 392 NFDLGVEVAEHLL 404 (580)
Q Consensus 392 ~~~~a~~~~~~~~ 404 (580)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8888887777654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=1.4e-06 Score=87.44 Aligned_cols=260 Identities=8% Similarity=-0.082 Sum_probs=142.2
Q ss_pred HHHHHHccCCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 046803 159 VARKVFDRMPD--K-SVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVG 235 (580)
Q Consensus 159 ~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 235 (580)
+|.+.|++..+ | ...+|..+..+|...|++++| |+++... .|+...-..+...+- ...+..+.+.+....+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-HHHHHHHHHHHHHhcc
Confidence 45666665543 2 345677777888888888876 6666543 332211000111111 1123455566666655
Q ss_pred cCCCCcHHH--hhHHhhHhhhcCCHHHHHHHHHhccC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 046803 236 QGLDVNVVL--ATSLINMYARCGNVSKAREIFDMMSE---LNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVT 310 (580)
Q Consensus 236 ~~~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 310 (580)
....++..- ...+...+...+.++.|...+....+ ++...|..+...+.+.|+.++|...+++.... .| ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~ 154 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHC 154 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHH
Confidence 433333221 12222333445667777776665443 45567888888899999999999888876642 22 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHH
Q 046803 311 FVAVLSACAHAGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACK 388 (580)
Q Consensus 311 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~ 388 (580)
+..+...+...|++++|...|++..+ +.| +...|+.|...+...|+..+|...|.+++...| -+.++..|...+.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 77888899999999999999999985 345 478999999999999999999999999997765 4888999888876
Q ss_pred hcCCchHHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046803 389 MHKNFDLGVEVAEHLLSVEPE---NPGHYVMLSNIYALAGRMDRVEVVRNIM 437 (580)
Q Consensus 389 ~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m 437 (580)
+..+..++. +..+. ....+..+...+...+.++...++.+++
T Consensus 232 ~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 232 KALESRDEV-------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHTTSCCCC-------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred Hhhhhhhhh-------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 554332111 01111 1224455555666677777666665544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.05 E-value=0.004 Score=57.40 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=24.1
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 046803 388 KMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVE 431 (580)
Q Consensus 388 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 431 (580)
.+.+++......++...+.+ +......|..+|...++++.-+
T Consensus 259 ~k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 259 SKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp HHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHHHH
Confidence 44455555555555544432 3456677777777777764433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.04 E-value=1.6e-05 Score=67.20 Aligned_cols=68 Identities=16% Similarity=0.027 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCcc
Q 046803 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQ-----KGLKK 444 (580)
Q Consensus 377 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-----~~~~~ 444 (580)
...+..+..++...|++++|+..++++++.+|.+...|..++.+|.+.|++++|.+.|+++.. .|+.|
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 456788999999999999999999999999999999999999999999999999999998744 46654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.99 E-value=9.3e-06 Score=66.20 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=73.6
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHH----------cCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHH
Q 046803 321 AGLVQEGHRVFASMRQEYGLLP-GVEHHVCMVDLFGR----------AGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACK 388 (580)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~----------~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~ 388 (580)
.+.+++|...|+...+. .| +...+..+..+|.. .+.+++|++.|++++.+.|+ ..+|..+..+|.
T Consensus 10 ~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 34455555555555432 23 34455555544442 34457788888888888884 778888888876
Q ss_pred hcC-----------CchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 389 MHK-----------NFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 389 ~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
..| ++++|.+.|+++++++|++...+..|... ..|.+++.+..+.|+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 654 36889999999999999987766666554 355666666666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=9.2e-05 Score=58.58 Aligned_cols=103 Identities=8% Similarity=-0.001 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHH
Q 046803 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-----VEHHVCM 350 (580)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l 350 (580)
+..+...|.+.|++++|+..|.+.++.. +.+...+..+..+|.+.|++++|...++.+++...-.+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3445566666777777777777766642 123456666666777777777777777665532111111 2345556
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCCCCHHH
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEKPAPAV 379 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 379 (580)
...+...+++++|++.|++.+...|+...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~~~~ 114 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCHHH
Confidence 66666666777777766665544454433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.89 E-value=5e-06 Score=67.87 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=73.4
Q ss_pred HHHcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhc----------CCchHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046803 354 FGRAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMH----------KNFDLGVEVAEHLLSVEPENPGHYVMLSNIYA 422 (580)
Q Consensus 354 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 422 (580)
|-+.+.+++|++.|++++...| ++.++..+..++... +.+++|+..|+++++++|+++.+|..++.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 4567789999999999998889 488888888887644 45688999999999999999999999999998
Q ss_pred hcCC-----------hhHHHHHHHHHHhC
Q 046803 423 LAGR-----------MDRVEVVRNIMIQK 440 (580)
Q Consensus 423 ~~g~-----------~~~a~~~~~~m~~~ 440 (580)
..|+ +++|.+.|++..+.
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 7764 57788888887763
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.82 E-value=2.3e-05 Score=64.79 Aligned_cols=90 Identities=13% Similarity=0.006 Sum_probs=68.1
Q ss_pred HHHHHHcCCHHHHHHHHHhHcCCC---CC----------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC--------
Q 046803 351 VDLFGRAGLLNEAYKFVKDVIGEK---PA----------PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPE-------- 409 (580)
Q Consensus 351 i~~~~~~g~~~~A~~~~~~~~~~~---p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-------- 409 (580)
...+.+.|++++|++.|++++.+. |+ ...|+.+..+|...|++++|...+++++++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 445567788888888887776322 21 356888888899999999999998888865432
Q ss_pred ---CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 410 ---NPGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 410 ---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
...++..++.+|...|++++|.+.|++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235778999999999999999999998753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=6.9e-05 Score=55.71 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhHcCC-------CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHH
Q 046803 346 HHVCMVDLFGRAGLLNEAYKFVKDVIGE-------KPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVML 417 (580)
Q Consensus 346 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 417 (580)
.+-.+...+.+.|++++|.+.|++++.. .++ ..++..|..++.+.|++++|+..++++++++|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3345778888889999988888777621 223 56788999999999999999999999999999998888776
Q ss_pred HHH
Q 046803 418 SNI 420 (580)
Q Consensus 418 ~~~ 420 (580)
...
T Consensus 87 ~~~ 89 (95)
T d1tjca_ 87 KYF 89 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.44 E-value=0.00077 Score=55.09 Aligned_cols=66 Identities=8% Similarity=-0.051 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhHc-------CCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 046803 345 EHHVCMVDLFGRAGLLNEAYKFVKDVI-------GEKPA-----PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN 410 (580)
Q Consensus 345 ~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 410 (580)
..|+.+..+|...|++++|.+.+++.+ ...++ ..++..+..+|...|++++|+..|++++++.|..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 345566666667777766666665554 22222 2246677888889999999999999988776543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.35 E-value=8.6e-05 Score=66.84 Aligned_cols=125 Identities=9% Similarity=0.001 Sum_probs=65.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 046803 285 MHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPG-VEHHVCMVDLFGRAGLLNEA 363 (580)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 363 (580)
+.|++++|+..+++.++.. +-|...+..+...++..|++++|...|+...+. .|+ ...+..+..++...+..+++
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHHH
Confidence 4566777777777666642 124456666666667777777777766666532 343 33444444444433443333
Q ss_pred HHHHHhHc-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 364 YKFVKDVI-GEKPA-PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 364 ~~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
..-..... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 32221111 11222 2223334445556666666666666666666665544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.34 E-value=0.0012 Score=55.21 Aligned_cols=114 Identities=10% Similarity=0.001 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 046803 276 WTAMISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFG 355 (580)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 355 (580)
...........|++++|.+.|.+.... .+.... ..+ ..+.+ +...-..+.. .....+..++..+.
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l-----~~~-~~~~w--~~~~r~~l~~-----~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE--WRGPVL-----DDL-RDFQF--VEPFATALVE-----DKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT-----GGG-TTSTT--HHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--Cccccc-----ccC-cchHH--HHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 344456778889999999999998873 222110 000 00111 1111111111 12346677889999
Q ss_pred HcCCHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046803 356 RAGLLNEAYKFVKDVIGEKP-APAVWTAMLGACKMHKNFDLGVEVAEHLL 404 (580)
Q Consensus 356 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 404 (580)
+.|++++|+..+++.+...| +...|..++.++...|+.++|++.|+++.
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999988888888 68899999999999999999999999874
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.30 E-value=0.061 Score=49.16 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=62.2
Q ss_pred HhccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChHHHHHHH
Q 046803 50 VCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNISPSNYTFSAVIKSCAHLSILNLGRAVH 129 (580)
Q Consensus 50 ~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 129 (580)
|.+.|.++.|..+|..+. .|..++..+.+.++++.|.+++.+.- +..+|..+..+|.+......+
T Consensus 24 c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la---- 88 (336)
T d1b89a_ 24 CYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA---- 88 (336)
T ss_dssp -----CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH----
T ss_pred HHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHH----
Confidence 335556666666665544 36666666666666666666655431 445566666666555444322
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCC
Q 046803 130 CHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMP---DKSVVAWNSMISGYEQNG 186 (580)
Q Consensus 130 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 186 (580)
.+.......++.....++..|-..|.+++...+++... ..+...++.++..|++.+
T Consensus 89 -~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 89 -QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp -HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred -HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 11122223344444456666666666666666666432 234445566666666543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00057 Score=50.43 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046803 377 PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPEN-------PGHYVMLSNIYALAGRMDRVEVVRNIMIQK 440 (580)
Q Consensus 377 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 440 (580)
+..+-.+...+.+.|+++.|+..|++++++.|.+ ..++..|+.+|.+.|++++|.+.++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445578889999999999999999999876543 356889999999999999999999999874
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.23 E-value=0.00036 Score=62.59 Aligned_cols=121 Identities=11% Similarity=0.011 Sum_probs=88.5
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCCchHHH
Q 046803 319 AHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNEAYKFVKDVIGEKPA-PAVWTAMLGACKMHKNFDLGV 397 (580)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~ 397 (580)
.+.|++++|...+++.++ .-+.+...+..+...|+..|++++|.+.++..+...|+ ...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 467999999999999986 33346899999999999999999999999888888886 566666666655444444433
Q ss_pred HHHHHHHh-cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046803 398 EVAEHLLS-VEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKG 441 (580)
Q Consensus 398 ~~~~~~~~-~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 441 (580)
........ .+|++...+...+..+...|+.++|.+.++++.+..
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 32222112 224444555666788899999999999999987643
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.35 Score=46.16 Aligned_cols=267 Identities=12% Similarity=-0.001 Sum_probs=138.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChH
Q 046803 145 AALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDID 224 (580)
Q Consensus 145 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 224 (580)
...+..+.+.++++...+.|..-+ .+...-.....+....|+..+|...+...-..|.. .+ +
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p----------------~ 137 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QP----------------N 137 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CC----------------T
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-Cc----------------h
Confidence 344566788889888777775433 24444456777888889999998888877655421 22 2
Q ss_pred HHHHHHHHHHHcCCCCcHHHhhHHhhHhhhcCCHHHHHHHHHhccCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 046803 225 LGRWVHEFIVGQGLDVNVVLATSLINMYARCGNVSKAREIFDMMSELNVIAWTAMISGYGMHGYGTEAVELFHRMRAHGV 304 (580)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 304 (580)
....++..+.+.| ..+...+-.-+......|+...|..+...+...........+.....- ..+..... . .
T Consensus 138 ~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p---~~~~~~~~---~--~ 208 (450)
T d1qsaa1 138 ACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFAR---T--T 208 (450)
T ss_dssp HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHH---H--S
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh---HhHHHHHh---c--C
Confidence 2233444444443 223333333444455567777777777776654444444444443221 12221111 1 1
Q ss_pred CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhHHhcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHhHcCCCCCHHHH
Q 046803 305 RPNNVTFVAVLSACAH--AGLVQEGHRVFASMRQEYGLLPGVE--HHVCMVDLFGRAGLLNEAYKFVKDVIGEKPAPAVW 380 (580)
Q Consensus 305 ~pd~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 380 (580)
.++......+..+..+ ..+.+.+..++..........++.. ....+...+...+..+.|...+........+....
T Consensus 209 ~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 288 (450)
T d1qsaa1 209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLI 288 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHH
T ss_pred CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHH
Confidence 1222222222222222 2456667776666655433333211 11112222233455666666664444333344433
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046803 381 TAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMI 438 (580)
Q Consensus 381 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 438 (580)
.-.+......++...+...+..+-......+....-++.++...|+.++|...+....
T Consensus 289 ~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 289 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 3344444556677777666665533222234455667777777777777777777653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.18 E-value=0.12 Score=38.59 Aligned_cols=141 Identities=12% Similarity=0.090 Sum_probs=96.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 046803 283 YGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGLLNE 362 (580)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 362 (580)
+...|..++..+++.+.... .+..-|+.++--....-+-+...++++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 34567778888888877753 245556666665555566666666666665433333 2344444
Q ss_pred HHHHHHhHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046803 363 AYKFVKDVIGEKPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRNIMIQKGL 442 (580)
Q Consensus 363 A~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 442 (580)
....+ -.++ .+..-+..-+....++|.-+.-.++++.+++.+..+|.....++++|.+.|...++.+++.+.-++|+
T Consensus 75 vv~C~-~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 75 VVECG-VINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHH-HHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 44433 2221 22334455567778889999999999998887777789999999999999999999999999999987
Q ss_pred c
Q 046803 443 K 443 (580)
Q Consensus 443 ~ 443 (580)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.14 Score=38.48 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=26.6
Q ss_pred CchHHHHHHHHHHhcCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046803 392 NFDLGVEVAEHLLSVEPENP-GHYVMLSNIYALAGRMDRVEVVRNIMIQ 439 (580)
Q Consensus 392 ~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 439 (580)
+.++|+.+++++++.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34455555555555555443 3445555566666666666666655554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.58 E-value=0.34 Score=37.12 Aligned_cols=46 Identities=9% Similarity=-0.029 Sum_probs=21.9
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 046803 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEFIVGQG 237 (580)
Q Consensus 187 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 237 (580)
++++|++.|++..+.| +......+. .....+.++|..++....+.|
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc
Confidence 4566666666666554 222222221 122334555555555555544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.23 Score=37.30 Aligned_cols=72 Identities=10% Similarity=0.067 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcch
Q 046803 342 PGVEHHVCMVDLFGRAG---LLNEAYKFVKDVIGEKPA--PAVWTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGH 413 (580)
Q Consensus 342 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 413 (580)
|++.+--...-++.+.. ++++++.++++.+...|. ...+..|.-+|.+.|++++|.+.++++++.+|+|..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 34444444444555443 456777788666655553 3567778888888999999999999999999987544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.41 E-value=0.41 Score=36.66 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 046803 187 FAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQ----LGDIDLGRWVHEFIVGQG 237 (580)
Q Consensus 187 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~ 237 (580)
+.++|+++|++..+.| ++.....|...|.. ..+.++|..++....+.|
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 4555556665555544 22333333333333 235566666666666655
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.21 E-value=3.5 Score=38.77 Aligned_cols=349 Identities=9% Similarity=-0.064 Sum_probs=183.1
Q ss_pred HHHhccCChhHHHHHHccCCCCChhhHHHHHHHHHcCCCccHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCChHHHH
Q 046803 48 SLVCDAGFITYAQRIFFCIPSPDSFLFNTLIIRNSKANFSTDSLLFYRRMIVSNI-SPSNYTFSAVIKSCAHLSILNLGR 126 (580)
Q Consensus 48 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~ 126 (580)
..+.+.++.+...+.|..-| .++..-.....+..+.|+..+|...+...-..|. .|+ .. .
T Consensus 80 ~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~--~c----------------~ 140 (450)
T d1qsaa1 80 NELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--AC----------------D 140 (450)
T ss_dssp HHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HH----------------H
T ss_pred HHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--HH----------------H
Confidence 34556667766666554432 2444444566677777888888877777665542 222 12 2
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 046803 127 AVHCHVFVSGYDSDLHVQAALVNFYAKSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPD 206 (580)
Q Consensus 127 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 206 (580)
.++....+.|. .+...+-.-+......|+...|..+...++..........+..... ...+...... ..++
T Consensus 141 ~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~-----~~~~ 211 (450)
T d1qsaa1 141 KLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-----TGAT 211 (450)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----SCCC
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc-----CCCC
Confidence 23333344442 2333333445556667888888888887765544444555544432 2222222211 1223
Q ss_pred hhHHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCcHH---HhhHHhhHhhhcCCHHHHHHHHHhccC--CChHHHHHH
Q 046803 207 STTCVCVLAACAQ--LGDIDLGRWVHEFIVGQGLDVNVV---LATSLINMYARCGNVSKAREIFDMMSE--LNVIAWTAM 279 (580)
Q Consensus 207 ~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~l 279 (580)
......+..+..+ ..+.+.+..++............. ....+...+...+..+.|...+..... .+.....-.
T Consensus 212 ~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~ 291 (450)
T d1qsaa1 212 DFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERR 291 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred hhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHH
Confidence 3333333333333 246677777776666543221111 112233334445666666666654432 233332334
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC
Q 046803 280 ISGYGMHGYGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVDLFGRAGL 359 (580)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 359 (580)
+......+++..+...+..|... ......-.--+..++...|+.++|..+|..+.. .++ .|.-|... +.|.
T Consensus 292 ~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~ 362 (450)
T d1qsaa1 292 VRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGE 362 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTC
T ss_pred HHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCC
Confidence 44455667888888888777542 122233344566778888888888888887753 133 33333211 1221
Q ss_pred HHHHHHHHHhHcCCCCC-HHH---HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 046803 360 LNEAYKFVKDVIGEKPA-PAV---WTAMLGACKMHKNFDLGVEVAEHLLSVEPENPGHYVMLSNIYALAGRMDRVEVVRN 435 (580)
Q Consensus 360 ~~~A~~~~~~~~~~~p~-~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 435 (580)
.- .+-....+..+. ... -..-+..+...|....|...+..+.+.. ++.-...++....+.|.++.|.....
T Consensus 363 ~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~ 437 (450)
T d1qsaa1 363 EY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI 437 (450)
T ss_dssp CC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 00 000000011111 111 1122345667788888888888776543 35566777888888888888887766
Q ss_pred HHH
Q 046803 436 IMI 438 (580)
Q Consensus 436 ~m~ 438 (580)
+..
T Consensus 438 ~~~ 440 (450)
T d1qsaa1 438 AGK 440 (450)
T ss_dssp HTT
T ss_pred HHH
Confidence 553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.04 E-value=1.2 Score=33.05 Aligned_cols=84 Identities=11% Similarity=-0.061 Sum_probs=59.9
Q ss_pred hCCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 046803 153 KSNNVDVARKVFDRMPDKSVVAWNSMISGYEQNGFAKEAIGLFNLMRDFGVNPDSTTCVCVLAACAQLGDIDLGRWVHEF 232 (580)
Q Consensus 153 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 232 (580)
+|+++......|-.+.. +....+.-++...++|+-++-.++++.+.+.+ +|++.....+..||.+.|+..++.+++.+
T Consensus 68 ~C~Nlk~vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ 145 (161)
T d1wy6a1 68 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIE 145 (161)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45555555555544432 33445666778888888888888888876643 77888888888889999998888888888
Q ss_pred HHHcCC
Q 046803 233 IVGQGL 238 (580)
Q Consensus 233 ~~~~~~ 238 (580)
+-+.|+
T Consensus 146 ACe~G~ 151 (161)
T d1wy6a1 146 ACKKGE 151 (161)
T ss_dssp HHHTTC
T ss_pred HHHHhH
Confidence 888775
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.96 E-value=2.8 Score=29.39 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 046803 288 YGTEAVELFHRMRAHGVRPNNVTFVAVLSACAHAGLVQEGHRVFASMRQEYGLLPGVEHHVCMVD 352 (580)
Q Consensus 288 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 352 (580)
+.-++.+-+..+....+.|+.....+.+.||.+.+++..|.++|+..+.+.+. +...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~--~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 45577777788888889999999999999999999999999999998765443 3456665554
|