Citrus Sinensis ID: 046820

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MIRSWRRLRASRHARKEQPARKETGASLIEKDPVTTTPRNGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRLECVDGWTKGL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHccccHccccccccccEccEEEEccccEEEEccccccEccHHccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHccc
Coil and Loop (DISEMBL)
MIRSWRRLRASRharkeqparketgasliekdpvtttprngitydrVNILieneriipvcSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKesesnkscivdnAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILlfplegealthlgsassmGCMIWFLnsgdlsrrRNAVLLLTELvssdsdqrkvnVLSENEGAIEALFKLIeepisptatKAALVVIYHTIASSASALSVLDGicstdcgrenandkpltmPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRLECVDGWTKGL
Flexible Loop (DISEMBL)
mirswrrlrasrharkeqparketgasliekdpvtttprngitydrvnilieneriipVCSVEVLEINSKIKtacetqdqvgCKDLVAKIKEWAkesesnkscivDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTelvssdsdqrkvnVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDcgrenandkpltmpvVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLklmnlhrdrlecvdgwtkgl
Low Complexity Region (SEG)
MIRSWRRLRASRHARKEQPARKETGASLIEKDPVTTTPRNGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRLECVDGWTKGL
Disordered region (IsUnstruct)
**************************************RNGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVS*******VNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRLECVDGW****
Disordered Region (DISOPRED)
*********************KETGASLIEKDPVTTTPRNGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAA************VSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEE****TATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVL*************SEVLKLMNLHRDRLECVDGWTKGL
Disordered Region (DISEMBL)
************************GASLIEKDPVTTTPRNGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRLECVDGWTKGL
Disordered Region (DISPRO)
***************KEQPARKETGASLIEKDPVTTTPRNGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRLECVDG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIRSWRRLRASRHARKEQPARKETGASLIEKDPVTTTPRNGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRLECVDGWTKGL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q5PNY6	435	U-box domain-containing p	no	no	0.84	0.675	0.357	2e-42
Q9C8D1	431	U-box domain-containing p	no	no	0.745	0.605	0.342	2e-34
Q058P4	448	U-box domain-containing p	no	no	0.417	0.325	0.317	2e-10
Q9FHN9	444	U-box domain-containing p	no	no	0.417	0.328	0.335	3e-10
Q9SVC6	435	E3 ubiquitin-protein liga	no	no	0.28	0.225	0.4	1e-08
Q84TG3	411	E3 ubiquitin-protein liga	no	no	0.734	0.625	0.253	5e-08
Q9LT79	421	U-box domain-containing p	no	no	0.637	0.529	0.265	8e-08
Q9FXA4	421	U-box domain-containing p	no	no	0.688	0.572	0.267	8e-07
Q9LSA6	415	U-box domain-containing p	no	no	0.24	0.202	0.354	3e-05
Q9LXE3	409	U-box domain-containing p	no	no	0.297	0.254	0.289	0.0002

>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1

 Score =  172 bits (437), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/352 (35%), Positives = 188/352 (53%), Gaps = 58/352 (16%)

Query: 23  ETGASLIEKDPVTTTPRNGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVG 82
           E G+ LI++ P   TPR                 +P+   EV EI+ K+ +A    D   
Sbjct: 100 EKGSPLIQRIP---TPR-----------------VPLMPCEVYEISRKLSSATRRGDYEK 139

Query: 83  CKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVS-VLEEILSTLIL 141
           C  ++ KIK+   ESE N+ C+ +N+   VL   F+ FS    DE ++ +L EILS L  
Sbjct: 140 CGVIIEKIKKLGDESEKNRKCVNENSVGWVLCDCFDKFSG---DEKLTFMLNEILSLLTW 196

Query: 142 LFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENE 201
           +FP+  E ++ L SA+S  C+   L S D S R+NA  ++ E++S D  + +V+  +   
Sbjct: 197 MFPIGLEGISKLASATSFRCVAGLLKSTDDSVRQNAAFIMKEILSLD--ETRVHSFAVEN 254

Query: 202 GAIEALFKLIEEPISPTATKAALVVIYHTIASSA-------------------------- 235
           G  EAL KLI + +S ++TK++L+ IY  +                              
Sbjct: 255 GVAEALVKLIRDSVSSSSTKSSLIAIYQMVLQKPEIASEFLEIGLVSITVEMIVDAENSV 314

Query: 236 --SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKRE 293
              AL+VLD IC T+ GRE      L MP++VKKI +VSELAT  S+S++ KL    K  
Sbjct: 315 CEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLW---KTG 371

Query: 294 EKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRL-ECVD 344
              A  +A+++GAFQK+L++LQVG  E TKEKA+E+LK+MN     + +CVD
Sbjct: 372 NTVAVEDAVRLGAFQKVLLVLQVGYGEETKEKATELLKMMNTQMKLMSDCVD 423

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 162/307 (52%), Gaps = 46/307 (14%)

Query: 57  IPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAA 116
           +PV S +V EI  ++  A    D   C ++V K+    KESE N+ C+ +N A  VL   
Sbjct: 116 VPVTSHQVSEICERLSAATRRGDYAACMEMVTKMTRLGKESERNRKCVKENGAGLVLCVC 175

Query: 117 FESFSKTCLDENVS-VLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRR 175
           F++FS+   + N S +LEE +S L  + P+  E  + L + SS   ++  L +GD    +
Sbjct: 176 FDAFSE---NANASLLLEETVSVLTWMLPIGLEGQSKLTTTSSFNRLVELLRNGD----Q 228

Query: 176 NAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSA 235
           NA  L+ EL+  +     V+ L++  G  EA  K I      +    +L+ I+H I ++ 
Sbjct: 229 NAAFLIKELLELNVTH--VHALTKINGVQEAFMKSINR---DSTCVNSLISIHHMILTNQ 283

Query: 236 ----------------------------SALSVLDGICSTDCGRENANDKPLTMPVVVKK 267
                                        AL+VL+ IC T  GRE      L +P++VKK
Sbjct: 284 ETVSRFLELDLVNITVEMLVDSENSVCEKALTVLNVICETKEGREKVRRNKLVIPILVKK 343

Query: 268 ILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKAS 327
           IL++SE   +L VS++WK+C   K  + +   EAL++GAF+KL+V+LQVGC E TKEK +
Sbjct: 344 ILKISE-KKDL-VSVMWKVC---KSGDGSEVEEALRLGAFKKLVVMLQVGCGEGTKEKVT 398

Query: 328 EVLKLMN 334
           E+LK+MN
Sbjct: 399 ELLKMMN 405

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 18/164 (10%)

Query: 173 RRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232
           R RN V     L+   S  ++V  L  + GA+  L  ++   + P   + AL V      
Sbjct: 286 RHRNGVSPALRLLKPISVHKQVRSLMVSIGAVPQLVDILPS-LDPECLELALFV------ 338

Query: 233 SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKR 292
                   LD +C+   GR    D   T+P  V+ ++RVSE  T  ++SILW +C     
Sbjct: 339 --------LDALCTDVEGRVAVKDSANTIPYTVRVLMRVSENCTNYALSILWSVC-KLAP 389

Query: 293 EEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336
           EE +    A++VG   KLL+++Q GC    K++++E+LKL +LH
Sbjct: 390 EECSPL--AVEVGLAAKLLLVIQSGCDAALKQRSAELLKLCSLH 431

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FHN9|PUB31_ARATH U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 18/164 (10%)

Query: 173 RRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232
           RRRN V     L+ S S  ++V  L    GA+  L  ++     P      L        
Sbjct: 282 RRRNGVSPALTLLKSVSVHKQVRNLLVRIGAVPQLVDVL-----PCLDVECL-------- 328

Query: 233 SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKR 292
              SAL VLD +C    GR    D   T+P  V+ +++VSE  T  ++SILW +C     
Sbjct: 329 --ESALFVLDSLCLESEGRIALKDSVNTIPHTVRLLMKVSEKCTNYAISILWSVC-KLAS 385

Query: 293 EEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336
           EE ++   A++VG   KLL+++Q GC    K++++E+LKL +LH
Sbjct: 386 EECSSL--AVEVGLAAKLLLVIQSGCDPALKQRSAELLKLCSLH 427

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 2/100 (2%)

Query: 233 SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKR 292
           +S  A+ VLD +C    GR    +    + VV KKILRVS++ +E +V +L  L +    
Sbjct: 317 NSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVSQITSERAVRVL--LSVGRFC 374

Query: 293 EEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKL 332
              +   E LQ+G   KL ++LQV C  +TKEKA E+LKL
Sbjct: 375 ATPSLLQEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKL 414

E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB23 and PUB24.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 134/312 (42%), Gaps = 55/312 (17%)

Query: 58  PVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAF 117
           P+C  E+ ++     +A   ++QV C   + ++++   E+ +NK C+        LA   
Sbjct: 97  PICKSEIEKLIRD--SASSHENQVKC---LKRLRQIVSENATNKRCLEAAGVPEFLANIV 151

Query: 118 ESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASS------MGCMIWFLNSGDL 171
            + S     EN S+ +E L+   LL+ LE          ++      +  +   +  G  
Sbjct: 152 SNDS-----ENGSLTDEALN---LLYHLETSETVLKNLLNNKKDNNIVKSLTKIMQRGMY 203

Query: 172 SRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAAL------- 224
             R  A LLL  ++      + + +  E       + +++++ IS  ATKAA+       
Sbjct: 204 ESRVYATLLLKNILEVADPMQSMTLKPE---VFTEVVQILDDRISQKATKAAMHILVNIC 260

Query: 225 ----------------VVIYHTIASSAS--------ALSVLDGICSTDCGRENANDKPLT 260
                           V+I   +  S +        A+ VLD +C    GR    +    
Sbjct: 261 PWGRNRHKAVEAGVISVIIELLMDESFTSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAA 320

Query: 261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAE 320
           + VV KKILRVS+ A++ +V +L  L +           E LQ+G   KL ++LQV C  
Sbjct: 321 IAVVCKKILRVSQTASDRAVRVL--LSVGRFCATPALLHEMLQLGVVAKLCLVLQVSCGG 378

Query: 321 RTKEKASEVLKL 332
           +TKEKA E+LKL
Sbjct: 379 KTKEKAKELLKL 390

E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB22 and PUB24.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 117/264 (44%), Gaps = 41/264 (15%)

Query: 89  KIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGE 148
           +++ +A++S+ N+  I  + A  +L      FS+T   E VS   E L+ L++L   E  
Sbjct: 131 RLRGFARDSDKNRVLIAAHNATEILIKIL--FSETTSSELVS---ESLALLVMLPITEPN 185

Query: 149 ALTHLGS-ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKV-NVLSENEGAIEA 206
               + S    +  +   L    +  R NA  L+ E+VS+ +    +   +S +E   E 
Sbjct: 186 QFVSISSDPGRVEFLTRLLFDSSIETRVNAAALI-EIVSTGTKSADLKGSISNSESVFEG 244

Query: 207 LFKLIEEPISPT-ATKAALVVIY--------HTIASSASA-------------------- 237
           +  L+  PIS   A K  +  ++          IA +A A                    
Sbjct: 245 VLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCDTERA 304

Query: 238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTA 297
           L+ ++ +C T  G     +  LT+P++VK ILRVS+ ATE +   L  LC  E+R  +  
Sbjct: 305 LATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEERWRE-- 362

Query: 298 FVEALQVGAFQKLLVLLQVGCAER 321
             EA   G   +LL+++Q  C ER
Sbjct: 363 --EAAGAGVVVQLLLMVQSECTER 384

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 117/277 (42%), Gaps = 36/277 (12%)

Query: 87  VAKIKEWAKESESNKSCIVDNAAVSVLAAA-FESFSKTCLDENVSVLEEILSTLILLFPL 145
           + +++  A++SE N+  I  + A  +L    F     T L   +      L  L+LL   
Sbjct: 128 IRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSELVSESLAL--LVLLHMT 185

Query: 146 EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIE 205
           E E        S +G M   L    +  R NA  L+  +++         ++S ++   E
Sbjct: 186 ETECEAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVLTGAKSMDLKLIISGSDSIFE 245

Query: 206 ALFKLIEEPISPT-ATKAALVVIY--------HTIASSASA------------------- 237
            +  L++ PIS   A K  +  I+          +A SA A                   
Sbjct: 246 GVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFDRCDTER 305

Query: 238 -LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKT 296
            L+ ++ +C    G     +  LT+P++VK ILRVS+ ATE +   L  LC  E+R    
Sbjct: 306 GLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALCTAEERCRD- 364

Query: 297 AFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM 333
              EA   G   +LL+L+Q  C ER K KA  +LKL+
Sbjct: 365 ---EAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLL 398

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 9/93 (9%)

Query: 244 ICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQ 303
           IC  D GR         +  VVKK+L+VS  ATE +V+ILW LC    RE+KT      +
Sbjct: 315 ICGDDNGR--------CVEGVVKKLLKVSTTATEHAVTILWCLCY-VFREDKTVEETVER 365

Query: 304 VGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336
                KLLV++Q  C+   ++ A +++K++  +
Sbjct: 366 SNGVTKLLVVIQSNCSAMVRQMAKDLIKVLKFN 398

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LXE3|PUB28_ARATH U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 230 TIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMN 289
           +++ +   L +L+ I S   GR    D  + +  VV K+++VS  ATE +V++LW +C  
Sbjct: 288 SVSVTEKCLKLLEAISSCKEGRSEICDG-VCVETVVNKLMKVSTAATEHAVTVLWSVCYL 346

Query: 290 EKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336
            K  EK A    +++    K+L+LLQ  C+   +   +++LK+  ++
Sbjct: 347 FK--EKKAQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVN 391

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
359473099	442	PREDICTED: U-box domain-containing prote	0.885	0.701	0.505	8e-90
118487984	441	unknown [Populus trichocarpa]	0.968	0.768	0.470	4e-89
255573216	426	Spotted leaf protein, putative [Ricinus	0.845	0.694	0.512	6e-87
14582200	442	immediate-early fungal elicitor protein	0.971	0.769	0.451	2e-85
297528369	444	CMPG1b [Nicotiana benthamiana]	0.968	0.763	0.426	2e-76
30013683	445	Avr9/Cf-9 rapidly elicited protein 74 [N	0.968	0.761	0.430	4e-75
297528367	444	CMPG1a [Nicotiana benthamiana]	0.968	0.763	0.426	3e-74
449449104	444	PREDICTED: U-box domain-containing prote	0.885	0.698	0.435	1e-72
297528375	451	CMPG1b [Solanum tuberosum]	0.974	0.756	0.404	2e-69
297528373	422	CMPG1a [Solanum tuberosum]	0.917	0.760	0.453	1e-68

>gi|359473099|ref|XP_003631249.1| PREDICTED: U-box domain-containing protein 21-like [Vitis vinifera]

 Score =  336 bits (862), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 197/390 (50%), Positives = 245/390 (62%), Gaps = 80/390 (20%)

Query: 31  KDPVTTTPRNGITYDRVNI------------------------------------LIEN- 53
           KDPVT +   GITYDR +I                                     +EN 
Sbjct: 46  KDPVTLS--TGITYDRESIEMWIEAGNRTCPITNQVLRSLEPIPNHTIRKMIQDWCVENR 103

Query: 54  ----ERI----IPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIV 105
               ERI    IP+ SVEV ++ SK K A   +D+ GC++LVAK+K   KESE NK CIV
Sbjct: 104 SFGIERIPTPRIPLSSVEVTDMLSKFKMAYRREDEAGCRELVAKMKSKGKESERNKRCIV 163

Query: 106 DNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWF 165
            N A  VL+AAFE+FS    D+ V+VLE+IL+ L  + PL+GEA ++L SA+S+ C++W 
Sbjct: 164 INGAAGVLSAAFEAFSSASFDKYVAVLEDILAALTWMSPLDGEAKSYLSSAASLNCLVWL 223

Query: 166 LNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALV 225
           L SGDLS R NAV  L EL+SSD  +RKV  LSE EGA EAL KL++EPI PTATK +LV
Sbjct: 224 LKSGDLSARGNAVSTLKELLSSD--KRKVYALSEIEGAKEALVKLVKEPICPTATKTSLV 281

Query: 226 VIYHTIASSAS-------------------------------ALSVLDGICSTDCGRENA 254
           VI+H ++SS S                               AL VLDGIC  + GRE A
Sbjct: 282 VIFHMVSSSPSNEDTKVRFVEMGLVELLLELLVDSEKSVCEKALGVLDGICGCEEGREKA 341

Query: 255 NDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLL 314
               LTMPV+VKK+LRVS+LATE SVSILWKL  NEKRE+ +  VEALQVGAFQKLL+LL
Sbjct: 342 YGHALTMPVLVKKLLRVSDLATEFSVSILWKLSKNEKREDGSVLVEALQVGAFQKLLLLL 401

Query: 315 QVGCAERTKEKASEVLKLMNLHRDRLECVD 344
           QVGC++RTKEKA+E+LKL+N+HR+RLEC+D
Sbjct: 402 QVGCSDRTKEKATELLKLLNIHRERLECID 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487984|gb|ABK95813.1| unknown [Populus trichocarpa]

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 204/434 (47%), Positives = 261/434 (60%), Gaps = 95/434 (21%)

Query: 1   MIRSWRRLRASRHARKEQ------------PARKETGASL-IEKDPVTTTPRNGITYDRV 47
           MI +WR+ R +R A K++            P       SL + KDPVT +  +GITYDR 
Sbjct: 2   MISTWRKRREARLAGKQRLESETGDIEVTVPNHFRCPVSLDLMKDPVTMS--SGITYDRE 59

Query: 48  NI-------------------------------LIEN----------ERI----IPVCSV 62
           +I                               +I++          ERI    IPV S 
Sbjct: 60  SIEKWIEAGNVTCPITNKVLRSLDPIPNHTIRKMIQDWCVANSSYGIERIPTPRIPVSSE 119

Query: 63  EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSK 122
           EVLEI+SKIKTAC   DQ GC++LVAKIK  AKESE N+ C+V      VL++AFE FSK
Sbjct: 120 EVLEIHSKIKTACRKGDQAGCQNLVAKIKALAKESERNRRCLVATGTAGVLSSAFEEFSK 179

Query: 123 TCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLT 182
              D+NV+VLEEILS L +L P   +A T+LGS +SM C++WFL S DLS RRNAVL+L 
Sbjct: 180 ASFDDNVAVLEEILSGLAVLLP-HDKATTYLGSDASMDCVVWFLKSEDLSTRRNAVLVLK 238

Query: 183 ELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSA------- 235
           ELV  D+  RKV++L E EGA EALFKLI+ PI P+ATKA+L++IYH + SS+       
Sbjct: 239 ELVPLDN--RKVDMLLEIEGATEALFKLIKAPICPSATKASLLIIYHMVMSSSPTNAKII 296

Query: 236 -------------------------SALSVLDGICSTDCGRENANDKPLTMPVVVKKILR 270
                                     AL VLDGIC  D GRE A +  LT+PV+V+KI R
Sbjct: 297 DKFLDLGLVSLLLEMLVDAERSICEKALGVLDGICDRDQGREKAYNHALTIPVLVRKIHR 356

Query: 271 VSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVL 330
           VS+LA + SVSIL+KLCMNEKR      VEA+Q  AF+KLLVLLQVGC ERT+EKA+++L
Sbjct: 357 VSDLAMKFSVSILFKLCMNEKRGNGGVLVEAIQRNAFEKLLVLLQVGCDERTREKATQLL 416

Query: 331 KLMNLHRDRLECVD 344
           KL+N++R R++C+D
Sbjct: 417 KLLNVYRGRVDCID 430

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573216|ref|XP_002527537.1| Spotted leaf protein, putative [Ricinus communis] gi|223533087|gb|EEF34846.1| Spotted leaf protein, putative [Ricinus communis]

 Score =  327 bits (838), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 200/390 (51%), Positives = 238/390 (61%), Gaps = 94/390 (24%)

Query: 31  KDPVTTTPRNGITYDRVNI-------------------------------LIEN------ 53
           KDPVT +   GITYDR +I                               +I++      
Sbjct: 44  KDPVTLS--TGITYDRQSIEKWIEGGNVTCPITAQVLRSLEPIPNHTIRKMIQDWCVDNK 101

Query: 54  ----ERI----IPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIV 105
               ERI    IPV SVE LEI S+I  +C   D+VGC++LVAKIK   KESE NK CI+
Sbjct: 102 SFGIERIPTPRIPVSSVEALEIQSRITASCNQGDRVGCRNLVAKIKTLLKESERNKRCIL 161

Query: 106 DNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWF 165
            NA+         SFS     EN +VLEEILS L L+FPL+ EA  +LGS++SM C++WF
Sbjct: 162 SNAS---------SFS-----ENAAVLEEILSCLTLMFPLDVEAKGYLGSSASMNCLVWF 207

Query: 166 LNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALV 225
           L  G LS RRNAVL+L ELVS   DQRKV  LS  EG  EALFKLI+EPI PTATKA+LV
Sbjct: 208 LKGGVLSGRRNAVLVLKELVS--LDQRKVEALSGIEGGAEALFKLIKEPICPTATKASLV 265

Query: 226 VIYHTIASSAS-------------------------------ALSVLDGICSTDCGRENA 254
           +IY+   S+ +                               AL VLDGIC +D GRE A
Sbjct: 266 IIYNMAMSTPTNARVISSFVDMGIVSLLMEMLVDTEKSICEKALGVLDGICCSDQGREKA 325

Query: 255 NDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLL 314
            D  LT+PV+VKKI RVSELATE SVSILWKLC NEKR+E     EALQVGAFQKLL+LL
Sbjct: 326 YDHSLTIPVLVKKIHRVSELATEFSVSILWKLCKNEKRKEGNVLPEALQVGAFQKLLLLL 385

Query: 315 QVGCAERTKEKASEVLKLMNLHRDRLECVD 344
           QVGC ERTKEKA+E+LKL+N +R+RLEC+D
Sbjct: 386 QVGCGERTKEKATELLKLLNPYRERLECID 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14582200|gb|AAK69401.1|AF274564_1 immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] gi|14582202|gb|AAK69402.1|AF274565_1 immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum]

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 197/436 (45%), Positives = 259/436 (59%), Gaps = 96/436 (22%)

Query: 1   MIRSWRRLRASRHARKEQ------------PARKETGASL-IEKDPVTTTPRNGITYDRV 47
           MI SW+++RASRHA K              P       SL + KDPVT +   GITYDR 
Sbjct: 1   MISSWKKIRASRHANKRNGLDDLSNMEVSIPNHFRCPISLDLMKDPVTLS--TGITYDRH 58

Query: 48  NI-------------------------------LIEN----------ERI----IPVCSV 62
           +I                               +I++          ERI    IPV S 
Sbjct: 59  SIETWIEAGNKTCPITKQMLSTLEPIPNHTIRKMIQDWCVDNSSYGIERIPTPRIPVSSH 118

Query: 63  EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSK 122
           +V E+ SK+  AC  ++   C++LV KIK   KE+E NK C V N  V VLA+ FE+FSK
Sbjct: 119 QVTEMLSKVVAACRREEASACQELVGKIKRLVKENERNKRCFVANGTVGVLASTFEAFSK 178

Query: 123 TCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLT 182
              D+NV+VLEEILS L L+ PL+GEA   LGS SS+ CM+WFL SGDLS R N+VL+L 
Sbjct: 179 LSFDKNVAVLEEILSCLSLMTPLDGEAKAFLGSNSSLNCMVWFLKSGDLSARANSVLVLK 238

Query: 183 ELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS------ 236
            ++S  +DQ+K+   S  EG++EAL K+I+EP+SPT TKA+L+++Y+ +++S+S      
Sbjct: 239 HVLS--TDQKKMEEFSMIEGSLEALVKVIKEPVSPTTTKASLLIVYYMVSTSSSSRVDDK 296

Query: 237 ----------------------------ALSVLDGICSTDCGRENANDKPLTMPVVVKKI 268
                                       AL VLDG+C T+ GRE A    LTMPV+VKKI
Sbjct: 297 IIARFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLTNEGREKAYANALTMPVLVKKI 356

Query: 269 LRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASE 328
           LRVS+LATE SVSI+WKL  N+K E+    VEAL+VGAFQKLL+LLQ GC E+ K+KA+E
Sbjct: 357 LRVSDLATEFSVSIVWKLSKNDKSEDGGVIVEALRVGAFQKLLLLLQFGCNEKIKDKATE 416

Query: 329 VLKLMNLHRDRLECVD 344
           +LKL+NLHRD+LEC+D
Sbjct: 417 LLKLLNLHRDKLECID 432

Source: Petroselinum crispum

Species: Petroselinum crispum

Genus: Petroselinum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297528369|gb|ADI46214.1| CMPG1b [Nicotiana benthamiana]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 187/438 (42%), Positives = 242/438 (55%), Gaps = 99/438 (22%)

Query: 1   MIRSWRRLRASRHARKEQPARKETGASLI-------------EKDPVTTTPRNGITYDRV 47
           MI +WR+ R  R   K       T   L+              KDPVT +   GITYDR 
Sbjct: 1   MISTWRKRRTERRVAKRGLMEDITSMELVIPRNFTCPISLDLMKDPVTLS--TGITYDRE 58

Query: 48  NI------------------------------------LIEN-----ERI----IPVCSV 62
           NI                                     +EN     ERI    IPV S 
Sbjct: 59  NIEKWIEAGNQTCPITNQTLRNGEPIPNHSIRKMIQQWCVENKDHGIERIQTPRIPVTSS 118

Query: 63  EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSK 122
           EV+E+ +KI  A    D   C++LV+K+K+   ESE NK C V N    VL+AAF +FS+
Sbjct: 119 EVVELLAKISKA--MHDSELCRELVSKVKKLVNESERNKRCFVTNGTAHVLSAAFVAFSE 176

Query: 123 TCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLT 182
               +N S  E ILSTL  + PL+GE+ ++LGS SS+GCM+WFLN+G LS RRNAV LL 
Sbjct: 177 EINMKNASTGELILSTLTTILPLDGESKSNLGSISSLGCMVWFLNNGSLSSRRNAVFLLK 236

Query: 183 ELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS------ 236
           +++  + +Q K+ +L   +GA+E L KL++EPI PT TKA+L+ IYH +  S S      
Sbjct: 237 DILKME-EQDKIEILLGMDGALEGLVKLVKEPICPTTTKASLLAIYHMVNPSHSSSFANK 295

Query: 237 -----------------------------ALSVLDGICSTDCGRENANDKPLTMPVVVKK 267
                                        AL VLDGIC +  GR+ A    LT+PV+VKK
Sbjct: 296 KAQSRFADVGLVELLVEMLVDCEKSICEKALGVLDGICRSIEGRKRAYSYALTVPVLVKK 355

Query: 268 ILRVSELATELSVSILWKLCMNEKREE-KTAFVEALQVGAFQKLLVLLQVGCAERTKEKA 326
           +LRVS+LATE SVSI+WK+  NE RE      VEAL++GAFQKLL+LLQVGC++ TKEKA
Sbjct: 356 LLRVSDLATEFSVSIIWKIGKNENRENGGDVLVEALKLGAFQKLLLLLQVGCSDTTKEKA 415

Query: 327 SEVLKLMNLHRDRLECVD 344
           SE+LKL+N+HRDR ECVD
Sbjct: 416 SELLKLLNVHRDRAECVD 433

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30013683|gb|AAP03884.1| Avr9/Cf-9 rapidly elicited protein 74 [Nicotiana tabacum]

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 189/439 (43%), Positives = 239/439 (54%), Gaps = 100/439 (22%)

Query: 1   MIRSWRRLRASRHARKEQPARKETGASLI-------------EKDPVTTTPRNGITYDRV 47
           MI +WR+ R  +   K       T   L+              KDPVT +   GITYDR 
Sbjct: 1   MISTWRKRRTEKRVAKRGLVEDITNMELVIPRHFTCPISLDLMKDPVTLS--TGITYDRE 58

Query: 48  NI------------------------------------LIEN-----ERI----IPVCSV 62
           NI                                     +EN     ERI    IPV S 
Sbjct: 59  NIEKWIEAGNQTCPITNQTLRNGEPIPNHSIRKMIQQWCVENKDHGIERIPTPRIPVTSS 118

Query: 63  EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSK 122
           EV+E+ +KI    E  D   C +LV+K+K+   ESE NK C V N    VL+AAF +FS+
Sbjct: 119 EVVELLAKISK--EIHDLELCGELVSKVKKLVNESERNKRCFVTNGTAQVLSAAFVAFSE 176

Query: 123 TCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLT 182
                N S  E ILSTL  + PL+GE+  +LGS SS+ CM+WFL +G LS RRNAV +L 
Sbjct: 177 EINMRNASTGEVILSTLTTILPLDGESKLNLGSISSLRCMVWFLKNGSLSSRRNAVFVLK 236

Query: 183 ELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSA------- 235
           +++  + +Q KV +L   EGA+E L KL++EPI PT TKA+L+ IYH + SS        
Sbjct: 237 DILKME-EQDKVEILLGMEGALEGLVKLVKEPICPTTTKASLLAIYHMVNSSHLSSSFAN 295

Query: 236 -----------------------------SALSVLDGICSTDCGRENANDKPLTMPVVVK 266
                                         AL VLDGICS+  GR+ A    LT+PV+VK
Sbjct: 296 KKAQSRFVDLGLVELLVEMLVDCEKSICEKALGVLDGICSSIEGRKRAYSYALTVPVLVK 355

Query: 267 KILRVSELATELSVSILWKLCMNEKREE-KTAFVEALQVGAFQKLLVLLQVGCAERTKEK 325
           K+LRVS+LATE SVSILWK+  NEKRE      VEAL++GAFQKLL+LLQVGC+E TKEK
Sbjct: 356 KLLRVSDLATEFSVSILWKIGKNEKRENGGDVLVEALKLGAFQKLLLLLQVGCSETTKEK 415

Query: 326 ASEVLKLMNLHRDRLECVD 344
           ASE+LKL+N+HRDR ECVD
Sbjct: 416 ASELLKLLNVHRDRAECVD 434

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297528367|gb|ADI46213.1| CMPG1a [Nicotiana benthamiana]

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 187/438 (42%), Positives = 237/438 (54%), Gaps = 99/438 (22%)

Query: 1   MIRSWRRLRASRHARKEQPARKETGASLI-------------EKDPVTTTPRNGITYDRV 47
           MI +WR+ R  R   K       T   L+              KDPVT +   GITYDR 
Sbjct: 1   MISTWRKRRTERRVAKRGLMEDITSMELVIPRNFTCPISLDLMKDPVTLS--TGITYDRE 58

Query: 48  NI-------------------------------LIEN----------ERI----IPVCSV 62
           NI                               +I+           ERI    IPV S 
Sbjct: 59  NIEKWIEAGNQTCPITNQTLRNGEPIPNHSIRKMIQQWCVANKDHGIERIPTPRIPVTSS 118

Query: 63  EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSK 122
           EV+E+ +KI       D   CK+LV+K+K+   ESE NK   V N    VL+AAF +FSK
Sbjct: 119 EVVELLAKISKG--MHDSELCKELVSKVKKLVNESERNKRSFVTNGIAHVLSAAFVAFSK 176

Query: 123 TCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLT 182
               +N S  E ILSTL  + PL+GE+ + LGS SS+ CM+WFLN+G LS RRNAV LL 
Sbjct: 177 EINMKNASTGEVILSTLTTILPLDGESKSILGSISSLRCMVWFLNNGSLSGRRNAVFLLK 236

Query: 183 ELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS------ 236
           +++  + +  KV +L    GA+E L KL++EPI PT TKA+L+ IYH +  S S      
Sbjct: 237 DILKME-EHDKVEILLGMGGALEGLVKLVQEPICPTTTKASLLAIYHMVNPSNSSSFANK 295

Query: 237 -----------------------------ALSVLDGICSTDCGRENANDKPLTMPVVVKK 267
                                        AL VLDGICS+  GR+   +  LT+PV+VKK
Sbjct: 296 KAQSRFADMGLVELLVEMLVDSEKSICEKALGVLDGICSSVEGRKGVYNYALTVPVLVKK 355

Query: 268 ILRVSELATELSVSILWKLCMNEKREE-KTAFVEALQVGAFQKLLVLLQVGCAERTKEKA 326
           +LRVS+LATE SVSI+WK+  NE RE      VEAL++GAFQKLL+LLQVGC+E TKEKA
Sbjct: 356 LLRVSDLATEFSVSIIWKIGKNENRENGGDVLVEALKLGAFQKLLLLLQVGCSETTKEKA 415

Query: 327 SEVLKLMNLHRDRLECVD 344
           SE+LKLMN+HRDR ECVD
Sbjct: 416 SELLKLMNVHRDRQECVD 433

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449104|ref|XP_004142305.1| PREDICTED: U-box domain-containing protein 21-like [Cucumis sativus] gi|449523075|ref|XP_004168550.1| PREDICTED: U-box domain-containing protein 21-like [Cucumis sativus]

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 173/397 (43%), Positives = 228/397 (57%), Gaps = 87/397 (21%)

Query: 31  KDPVTTTPRNGITYDRVNI------------------------------------LIEN- 53
           KDPVT +   GITYDR +I                                     +EN 
Sbjct: 41  KDPVTLS--TGITYDRASIETWIEGGNFTCPFTNQPLQTIDSIPNHNIRKMIQDWCVENR 98

Query: 54  ----ERI----IPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIV 105
               ERI    +P    +V EI  K+  A    D  GCK +V KIK+  KESE NK CI+
Sbjct: 99  AYGIERIPTPRVPASPAQVREILEKMAAAARRGDCDGCKSMVEKIKKLGKESERNKKCII 158

Query: 106 DNAAVSVLAAAFESFSKT-CLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIW 164
            N   + L++ FE+FS     ++ + +LEEILS + + FPL+ E++ HL S +S+  ++W
Sbjct: 159 ANGTGNTLSSIFEAFSNPETFEKRIEILEEILSAMTVAFPLQEESIKHLKSETSLQSLVW 218

Query: 165 FLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAAL 224
           FL  GD+S RRN+VL+L E++SS  +  KV+ L E +GA+E L KLI++PI  ++ KA+L
Sbjct: 219 FLKGGDISGRRNSVLVLKEIISSYPE--KVDELGEIQGALEGLIKLIKDPICSSSRKASL 276

Query: 225 VVIYHTIASSAS----------------------------------ALSVLDGICSTDCG 250
            + YH IAS++S                                  AL   DGIC T  G
Sbjct: 277 FITYHVIASTSSSSNRERFTKELLQMGLVSLLLETLVDAERSVCERALGAFDGICETKQG 336

Query: 251 RENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAF--VEALQVGAFQ 308
           RE A    LTMPV+VKKILRVS+LATELSV I+WKL  +E +EE+     VEALQVGAFQ
Sbjct: 337 REEAYAHALTMPVIVKKILRVSDLATELSVCIVWKLVKHESKEEEDGGIKVEALQVGAFQ 396

Query: 309 KLLVLLQVGCAERTKEKASEVLKLM-NLHRDRLECVD 344
           KLL+LLQVGC+E TKEKA+E+LKL+ NLHRDRLEC+D
Sbjct: 397 KLLLLLQVGCSEWTKEKATELLKLLNNLHRDRLECID 433

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297528375|gb|ADI46217.1| CMPG1b [Solanum tuberosum]

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 179/443 (40%), Positives = 235/443 (53%), Gaps = 102/443 (23%)

Query: 1   MIRSWRRLRASRHARKEQPARKETGASLIE------------KDPVTTTPRNGITYDRVN 48
           MI +WR+ R  +   K    +K     +I             KDPVT +   GITYDR N
Sbjct: 1   MIATWRKKRTEKRVTKRGFMKKTIKELVIPSQFTCPISLDLMKDPVTLS--TGITYDREN 58

Query: 49  I--------------------------------LIENERI-------------------- 56
           I                                LI N  I                    
Sbjct: 59  IEKWINEGGNQTCPITNQDLKSYGSGISTIDPVLIPNHNIRKMIQQWCVENKEHGIDRIP 118

Query: 57  ---IPVCSVEVLEINSKIKTAC--ETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVS 111
              IP+ S +V E+ +KI  +   E QD   C++LV ++K  A ES+ NK C V N    
Sbjct: 119 TPRIPISSSDVSELLAKITNSSKLEMQDSRLCEELVTRVKNLASESDRNKCCFVTNGIGK 178

Query: 112 VLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDL 171
           VL++AF   SK    +N S  E ILSTL L  PL+ ++ T LGS SS+ C+ WFL +G L
Sbjct: 179 VLSSAFLELSKGKNAKNASTEEVILSTLTLFLPLDVKSKTILGSISSLRCIAWFLKNGSL 238

Query: 172 SRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTI 231
           S RRNAVL+L +++  + +Q KV +L   EGA+E L KL++EPI P  TKA+L+ IYH +
Sbjct: 239 SSRRNAVLVLRDIMKME-EQEKVEILLNIEGALEGLVKLVKEPICPNTTKASLLTIYHMV 297

Query: 232 ASSA------------------------------SALSVLDGICSTDCGRENANDKPLTM 261
            +S+                               AL VLDGI S + G + A +  L++
Sbjct: 298 INSSSQSSRSRFVDVGLVELLIELLVDCDKSICEKALGVLDGILSYEEGVKRAYNYALSV 357

Query: 262 PVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAER 321
           PV+VKK+LRVS+LATE SVSILWK+C NE   +    VEALQVGAFQKLL++LQVGC+E 
Sbjct: 358 PVLVKKLLRVSDLATEFSVSILWKICKNENNGDCGVLVEALQVGAFQKLLLMLQVGCSEM 417

Query: 322 TKEKASEVLKLMNLHRDRLECVD 344
           TKEKASE+LKL+N+HRDR ECVD
Sbjct: 418 TKEKASELLKLLNVHRDRAECVD 440

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297528373|gb|ADI46216.1| CMPG1a [Solanum tuberosum]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 165/364 (45%), Positives = 220/364 (60%), Gaps = 43/364 (11%)

Query: 22  KETGASLIEKDPVTTTPRNGITYDRVNILIEN-----ERI----IPVCSVEVLEINSKIK 72
           K  G+ +   DP T  P + I        +EN     +RI    IPV S +V E+ +KI 
Sbjct: 50  KSYGSGISTIDP-TLIPNHNIRKMIQQWCVENKEHGIDRIPTPRIPVSSSDVSELLAKIT 108

Query: 73  TAC--ETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVS 130
            +   E QD   C++LV ++K  A ES+ NK C + N    VL++AF   SK    +N S
Sbjct: 109 NSSKLEMQDSRLCEELVTRVKNLASESDRNKCCFITNGIGKVLSSAFLELSKGRNAKNAS 168

Query: 131 VLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSD 190
             E ILSTL L  PL+ ++ T LGS SS+ C+ WFL +G LS RRNAVL+L E++  + +
Sbjct: 169 TEEVILSTLTLFLPLDVKSKTILGSISSLRCIAWFLKNGSLSSRRNAVLVLREIMKLE-E 227

Query: 191 QRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS-------------- 236
           + KV +L   EGA+E L KL++EPI P  TKA+L+ IYH + +S+S              
Sbjct: 228 KEKVEILLNIEGALEGLVKLVKEPICPNTTKASLLTIYHMVINSSSQSLRSRFVDVGLVE 287

Query: 237 ----------------ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSV 280
                           AL VLDGI S + G + A +  L++PV+VKK+LRVS+LATE SV
Sbjct: 288 LLIEILVDCDKSICEKALGVLDGILSYEEGVKRAYNYALSVPVLVKKLLRVSDLATEFSV 347

Query: 281 SILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRL 340
           SILWK+C NE   +    VEALQVGAFQKLL++LQVGC+E TKEK SE+LKL+N+HRDR 
Sbjct: 348 SILWKICKNENNGDCGVLVEALQVGAFQKLLLMLQVGCSEITKEKGSELLKLLNVHRDRA 407

Query: 341 ECVD 344
           ECVD
Sbjct: 408 ECVD 411

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2169861	435	AT5G37490 [Arabidopsis thalian	0.485	0.390	0.357	1.9e-51
TAIR|locus:2013850	431	CMPG1 ""CYS, MET, PRO, and GLY	0.771	0.626	0.332	5.7e-36
TAIR|locus:2075457	379	AT3G02840 [Arabidopsis thalian	0.631	0.583	0.322	3.2e-26
TAIR|locus:2090604	421	PUB25 "plant U-box 25" [Arabid	0.265	0.220	0.391	1.8e-13
TAIR|locus:2012136	421	PUB26 "plant U-box 26" [Arabid	0.262	0.218	0.385	2.1e-13
TAIR|locus:2079964	435	PUB22 "plant U-box 22" [Arabid	0.28	0.225	0.4	8.4e-13
TAIR|locus:2039265	411	PUB23 "plant U-box 23" [Arabid	0.268	0.228	0.406	9.1e-13
TAIR|locus:2097390	448	AT3G49810 [Arabidopsis thalian	0.277	0.216	0.4	1.2e-11
TAIR|locus:2152049	444	AT5G65920 [Arabidopsis thalian	0.417	0.328	0.335	1.1e-10
TAIR|locus:2144846	409	AT5G09800 [Arabidopsis thalian	0.837	0.716	0.230	8.5e-09

TAIR|locus:2169861 AT5G37490 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.9e-51, Sum P(3) = 1.9e-51
 Identities = 63/176 (35%), Positives = 102/176 (57%)

Query:    57 IPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAA 116
             +P+   EV EI+ K+ +A    D   C  ++ KIK+   ESE N+ C+ +N+   VL   
Sbjct:   114 VPLMPCEVYEISRKLSSATRRGDYEKCGVIIEKIKKLGDESEKNRKCVNENSVGWVLCDC 173

Query:   117 FESFSKTCLDENVS-VLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRR 175
             F+ FS    DE ++ +L EILS L  +FP+  E ++ L SA+S  C+   L S D S R+
Sbjct:   174 FDKFSG---DEKLTFMLNEILSLLTWMFPIGLEGISKLASATSFRCVAGLLKSTDDSVRQ 230

Query:   176 NAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTI 231
             NA  ++ E++S D  + +V+  +   G  EAL KLI + +S ++TK++L+ IY  +
Sbjct:   231 NAAFIMKEILSLD--ETRVHSFAVENGVAEALVKLIRDSVSSSSTKSSLIAIYQMV 284

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2013850 CMPG1 ""CYS, MET, PRO, and GLY protein 1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 99/298 (33%), Positives = 159/298 (53%)

Query:    57 IPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAA 116
             +PV S +V EI  ++  A    D   C ++V K+    KESE N+ C+ +N A  VL   
Sbjct:   116 VPVTSHQVSEICERLSAATRRGDYAACMEMVTKMTRLGKESERNRKCVKENGAGLVLCVC 175

Query:   117 FESFSKTCLDENVSVL-EEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGD----- 170
             F++FS+     N S+L EE +S L  + P+  E  + L + SS   ++  L +GD     
Sbjct:   176 FDAFSENA---NASLLLEETVSVLTWMLPIGLEGQSKLTTTSSFNRLVELLRNGDQNAAF 232

Query:   171 -----LSRRRNAVLLLTELVS-SDSDQRKVNVLSENEGAIEALFKLI---EEPISPTATK 221
                  L      V  LT++    ++  + +N  S    ++ ++  +I   +E +S     
Sbjct:   233 LIKELLELNVTHVHALTKINGVQEAFMKSINRDSTCVNSLISIHHMILTNQETVSRFLEL 292

Query:   222 AALVVIYHTIASSAS-----ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELAT 276
               + +    +  S +     AL+VL+ IC T  GRE      L +P++VKKIL++SE   
Sbjct:   293 DLVNITVEMLVDSENSVCEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISE-KK 351

Query:   277 ELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN 334
             +L VS++WK+C   K  + +   EAL++GAF+KL+V+LQVGC E TKEK +E+LK+MN
Sbjct:   352 DL-VSVMWKVC---KSGDGSEVEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMMN 405

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2075457 AT3G02840 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 76/236 (32%), Positives = 132/236 (55%)

Query:     1 MIRSWRRLRASRHARKEQPARKETGASLIE-KDPVTTTPRNGITYDRVNILIENERIIPV 59
             M+  WR  R     R+ Q    +   S++E K PV    R+    +R    I++ R++ +
Sbjct:     1 MVLPWRS-RGGVAKRRNQLISGDI--SVVETKIPVQL--RSPSRIER----IQSPRVL-L 50

Query:    60 CSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFES 119
                + +EI+ +++ A   ++   C ++V+KIK   +  ++NK C+V N +V  L++ FE 
Sbjct:    51 TPRDAVEISRRLQNAAAREEYAECLEIVSKIKNLGRGGDTNKKCLVQNGSVLALSSCFER 110

Query:   120 FSKTCLDENVSVLEEILSTLILLFPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAV 178
             F+    D ++ +LEEIL  L    PL   E    +GS +S+ C++ FLN  D   R+NA 
Sbjct:   111 FA-AARDGHMRLLEEILFVLSSWLPLNRSEGFNKMGSTASLNCLVRFLNGKDAKTRQNAA 169

Query:   179 LLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS 234
               + E+++ D  +R V  L++ EGA E L K+I + +S ++TKA+L+VIY  I+S+
Sbjct:   170 FCIREVIAVD--KRYVYALTDVEGACEGLVKIIRDSVSTSSTKASLMVIYRAISSN 223

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0051707 "response to other organism" evidence=ISS

GO:0010193 "response to ozone" evidence=IEP

GO:0005634 "nucleus" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2090604 PUB25 "plant U-box 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query:   237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKT 296
             AL+ ++ +C T  G     +  LT+P++VK ILRVS+ ATE +   L  LC  E+R  + 
Sbjct:   304 ALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEERWRE- 362

Query:   297 AFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM 333
                EA   G   +LL+++Q  C ER K+KA ++LKL+
Sbjct:   363 ---EAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLL 396

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2012136 PUB26 "plant U-box 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 37/96 (38%), Positives = 53/96 (55%)

Query:   238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTA 297
             L+ ++ +C    G     +  LT+P++VK ILRVS+ ATE +   L  LC  E+R     
Sbjct:   307 LATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALCTAEERCRD-- 364

Query:   298 FVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM 333
               EA   G   +LL+L+Q  C ER K KA  +LKL+
Sbjct:   365 --EAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLL 398

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2079964 PUB22 "plant U-box 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 8.4e-13, Sum P(3) = 8.4e-13
 Identities = 40/100 (40%), Positives = 57/100 (57%)

Query:   233 SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKR 292
             +S  A+ VLD +C    GR    +    + VV KKILRVS++ +E +V +L  L +    
Sbjct:   317 NSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVSQITSERAVRVL--LSVGRFC 374

Query:   293 EEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKL 332
                +   E LQ+G   KL ++LQV C  +TKEKA E+LKL
Sbjct:   375 ATPSLLQEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKL 414

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2039265 PUB23 "plant U-box 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 9.1e-13, Sum P(3) = 9.1e-13
 Identities = 39/96 (40%), Positives = 54/96 (56%)

Query:   237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKT 296
             A+ VLD +C    GR    +    + VV KKILRVS+ A++ +V +L  L +        
Sbjct:   297 AMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVL--LSVGRFCATPA 354

Query:   297 AFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKL 332
                E LQ+G   KL ++LQV C  +TKEKA E+LKL
Sbjct:   355 LLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELLKL 390

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2097390 AT3G49810 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
 Identities = 40/100 (40%), Positives = 61/100 (61%)

Query:   237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKT 296
             AL VLD +C+   GR    D   T+P  V+ ++RVSE  T  ++SILW +C     EE +
Sbjct:   335 ALFVLDALCTDVEGRVAVKDSANTIPYTVRVLMRVSENCTNYALSILWSVCKLAP-EECS 393

Query:   297 AFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336
                 A++VG   KLL+++Q GC    K++++E+LKL +LH
Sbjct:   394 PL--AVEVGLAAKLLLVIQSGCDAALKQRSAELLKLCSLH 431

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2152049 AT5G65920 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 55/164 (33%), Positives = 83/164 (50%)

Query:   173 RRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA 232
             RRRN V     L+ S S  ++V  L    GA+  L  ++     P      L        
Sbjct:   282 RRRNGVSPALTLLKSVSVHKQVRNLLVRIGAVPQLVDVL-----PCLDVECL-------- 328

Query:   233 SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKR 292
                SAL VLD +C    GR    D   T+P  V+ +++VSE  T  ++SILW +C     
Sbjct:   329 --ESALFVLDSLCLESEGRIALKDSVNTIPHTVRLLMKVSEKCTNYAISILWSVCKLAS- 385

Query:   293 EEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH 336
             EE ++   A++VG   KLL+++Q GC    K++++E+LKL +LH
Sbjct:   386 EECSSL--AVEVGLAAKLLLVIQSGCDPALKQRSAELLKLCSLH 427

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2144846 AT5G09800 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
 Identities = 73/317 (23%), Positives = 143/317 (45%)

Query:    31 KDPVTTTPRNGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVGCKD-LVAK 89
             + P + TP    T D +N  IE  RI      ++L      + + E ++ +  KD  VA 
Sbjct:    88 ESPESDTP----TRDEINAAIERFRIENDARSKILRF---ARESDENREFLAGKDDFVAM 140

Query:    90 IKEWAKESE--SNKSCIVDNAAVSVLAAAFES-FSKTCLDENVSVLE--EILSTLILLFP 144
             + +   +S   S+   ++   AV +L+      F +  L  N+ +    + L++  LL  
Sbjct:   141 LVDLISDSRNFSDSQLLLVGEAVKILSMIRRKIFDRRRLS-NLILTNGGDCLTSFFLLIK 199

Query:   145 LEGEALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSD----QRKVNVLSE 199
               G     +  ++ +  +     S   +++    V  + +L+SSDSD    +  +++L  
Sbjct:   200 -RGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLISSDSDSSLIEANLSLLIA 258

Query:   200 NEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPL 259
                +      LI E +    T + L     +++ +   L +L+ I S   GR    D  +
Sbjct:   259 IASSKRVKLALIREKLVTKLT-SLLTDPTTSVSVTEKCLKLLEAISSCKEGRSEICDG-V 316

Query:   260 TMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCA 319
              +  VV K+++VS  ATE +V++LW +C   K  EK A    +++    K+L+LLQ  C+
Sbjct:   317 CVETVVNKLMKVSTAATEHAVTVLWSVCYLFK--EKKAQDAVIRINGVTKILLLLQSNCS 374

Query:   320 ERTKEKASEVLKLMNLH 336
                +   +++LK+  ++
Sbjct:   375 LTVRHMLTDLLKVFKVN 391

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.92
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.65
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.5
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.39
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.35
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.27
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.26
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.02
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	98.84
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	98.84
KOG1048	717	consensus Neural adherens junction protein Plakoph	98.71
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.64
KOG1048	717	consensus Neural adherens junction protein Plakoph	98.64
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.61
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.55
KOG4199	461	consensus Uncharacterized conserved protein [Funct	98.34
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	98.31
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	98.3
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.15
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.93
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	97.9
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.89
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.7
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.6
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	97.55
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	97.53
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.5
PF05536	543	Neurochondrin: Neurochondrin	97.45
KOG4199	461	consensus Uncharacterized conserved protein [Funct	97.44
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	97.34
PRK09687	280	putative lyase; Provisional	97.33
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	97.0
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	96.92
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	96.91
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	96.79
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	96.75
PRK09687	280	putative lyase; Provisional	96.74
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.72
PF05536	543	Neurochondrin: Neurochondrin	96.7
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	96.67
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	96.57
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	96.5
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.41
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	96.3
KOG4646	173	consensus Uncharacterized conserved protein, conta	95.85
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	95.62
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	95.5
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	95.41
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	94.96
KOG4646	173	consensus Uncharacterized conserved protein, conta	94.9
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	94.66
PTZ00429	746	beta-adaptin; Provisional	94.32
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	94.13
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	94.02
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	93.75
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	93.49
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	93.29
KOG1242	569	consensus Protein containing adaptin N-terminal re	92.7
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	92.39
KOG1293	678	consensus Proteins containing armadillo/beta-caten	91.99
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	91.8
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	91.78
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	91.77
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	91.58
KOG3036	293	consensus Protein involved in cell differentiation	91.53
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	90.92
KOG2973	353	consensus Uncharacterized conserved protein [Funct	90.86
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	89.77
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	88.5
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	88.29
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	87.25
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	87.22
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	87.08
KOG1293	678	consensus Proteins containing armadillo/beta-caten	86.27
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	86.18
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	86.13
KOG3678	832	consensus SARM protein (with sterile alpha and arm	85.88
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	85.77
PTZ00429	746	beta-adaptin; Provisional	85.71
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	84.9
cd03561	133	VHS VHS domain family; The VHS domain is present i	84.82
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	83.18
KOG3678	832	consensus SARM protein (with sterile alpha and arm	82.1
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	81.7
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	81.69
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	81.69
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	80.85
KOG2973	353	consensus Uncharacterized conserved protein [Funct	80.73
cd03561	133	VHS VHS domain family; The VHS domain is present i	80.45
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	80.34

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=1.4e-29  Score=283.64  Aligned_cols=255  Identities=18%  Similarity=0.188  Sum_probs=213.8

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      |..++..|++..  ..+..+..|+++|+.|++++++||+||+++|++++|+.+|..+...   ......++++.+|+   
T Consensus      1148 Ip~Lv~lL~~~~--~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~---s~e~a~~ElL~IL~--- 1219 (2102)
T PLN03200       1148 IPLLVDLLKPIP--DRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQD---STEEAASELLRILF--- 1219 (2102)
T ss_pred             HHHHHHHhcccc--ccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCcc---chhHHHHHHHHHHh---
Confidence            555666666532  1124578999999999999999999999999999999999754221   12445677777654   


Q ss_pred             CCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhh------------------hchhhHHH
Q 046820          144 PLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVL------------------SENEGAIE  205 (350)
Q Consensus       144 s~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~I------------------g~~~g~i~  205 (350)
                       .+++.+..+.+.+++++|+++|++|+.++|.+|+.+|++|+...   +++..+                  +..++++.
T Consensus      1220 -~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~---~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ 1295 (2102)
T PLN03200       1220 -SSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAE---HIRDSELARQAVQPLVEMLNTGSESEQHAAIG 1295 (2102)
T ss_pred             -CCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh---hhhhhhhhhccchHHHHHhcccchhhhHHHHH
Confidence             46677777888889999999999999999999999999998763   432222                  33468888


Q ss_pred             HHHHHhcCCCChHHHH-----HHHHH----------------HHHhhhh-------------------------------
Q 046820          206 ALFKLIEEPISPTATK-----AALVV----------------IYHTIAS-------------------------------  233 (350)
Q Consensus       206 ~LV~lL~~~~~~~a~k-----~Al~a----------------L~~L~~~-------------------------------  233 (350)
                      +|+++++++.++++.+     .++.+                +++||.+                               
T Consensus      1296 ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~ 1375 (2102)
T PLN03200       1296 ALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTA 1375 (2102)
T ss_pred             HHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchH
Confidence            8888998888899999     88999                8888763                               


Q ss_pred             HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHH
Q 046820          234 SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVL  313 (350)
Q Consensus       234 ~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~l  313 (350)
                      .|.++++|++||.|+|||+++..|++++|.++ +++++|+.++|.||++||.||+.    ++.++.+|++.|+|++||.+
T Consensus      1376 ~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~-~ilrvS~~a~E~AV~aL~kl~~~----~~~v~~Emv~~G~~~kllll 1450 (2102)
T PLN03200       1376 QEAGVCALDRLLDDEQLAELVAAHGAVVPLVG-LVVGTNYVLHEAAISALIKLGKD----RPPCKLDMVKAGIIERVLDI 1450 (2102)
T ss_pred             HHHHHHHHHHHhcCHhhHHHHHHcCChhhHHH-HHHcCCHHHHHHHHHHHHHHhCC----ChHHHHHHHHhCHHHHHHHH
Confidence            16899999999999999999999999999988 89999999999999999999953    36799999999999999999


Q ss_pred             HHhcCchHHHHHHHHHHHHHHhc
Q 046820          314 LQVGCAERTKEKASEVLKLMNLH  336 (350)
Q Consensus       314 lq~~~t~~ak~kA~~LLk~l~~~  336 (350)
                      ||+ |+.++|+||++|||+|+.+
T Consensus      1451 LQ~-c~~~lkekAaeLLrlL~~~ 1472 (2102)
T PLN03200       1451 LPE-APDSLCSAIAELLRILTNN 1472 (2102)
T ss_pred             HHc-CCHHHHHHHHHHHHHhccc
Confidence            999 9999999999999999974

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.92  E-value=2.5e-23  Score=233.72  Aligned_cols=260  Identities=13%  Similarity=0.098  Sum_probs=212.7

Q ss_pred             cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhc-cCchHHHHHHHHhccccccccchHHHHHHHHHH
Q 046820           61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVD-NAAVSVLAAAFESFSKTCLDENVSVLEEILSTL  139 (350)
Q Consensus        61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~-aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L  139 (350)
                      ...+.+++++|++...  +++++.+|+++|+.+++++++||.+|++ +|+||.|+.+|.   .+    +..++++|+++|
T Consensus        12 ~~~v~~Lve~L~s~~s--s~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~---sg----~~~vk~nAaaaL   82 (2102)
T PLN03200         12 LASVAQCIEQLRAKSS--SPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR---SG----TLGAKVNAAAVL   82 (2102)
T ss_pred             HHHHHHHHHHHHcccC--CHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc---CC----CHHHHHHHHHHH
Confidence            3578899999987531  4678999999999999999999999997 699999999996   22    377899999999


Q ss_pred             HhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHH
Q 046820          140 ILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTA  219 (350)
Q Consensus       140 ~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a  219 (350)
                      . +|+.++++|..|...|+|++|+++|++|+.++|++|+.+|++|+....++.++..|+...|+||+|+.+++++.....
T Consensus        83 ~-nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~  161 (2102)
T PLN03200         83 G-VLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDK  161 (2102)
T ss_pred             H-HHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhH
Confidence            9 899999999888889999999999999999999999999999997641124555555568999999999998732222


Q ss_pred             --HHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhC-CHhhHHHhhcCCCChHHHHHHH
Q 046820          220 --TKAALVVIYHTIASS----------------------------ASALSVLDGICS-TDCGRENANDKPLTMPVVVKKI  268 (350)
Q Consensus       220 --~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~-~~eGr~ai~~~~~~v~~lv~~l  268 (350)
                        ...|..+|+|||...                            +.|+.+|.+++. +++++.++. +.|+||.+|++|
T Consensus       162 ~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVI-eaGaVP~LV~LL  240 (2102)
T PLN03200        162 VVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVL-DAGAVKQLLKLL  240 (2102)
T ss_pred             HHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHH-HCCCHHHHHHHH
Confidence              244568999998531                            378888888876 478999996 789999999988


Q ss_pred             hccC-hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcC--------chHHHHHHHHHHHHHHh
Q 046820          269 LRVS-ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGC--------AERTKEKASEVLKLMNL  335 (350)
Q Consensus       269 ~~~S-~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~--------t~~ak~kA~~LLk~l~~  335 (350)
                      ..++ +..+|+|+.+|++||+.+    .+.+..+++.|+++.|+.++++..        +...++.|...|..+.+
T Consensus       241 ~sg~~~~VRE~AA~AL~nLAs~s----~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg  312 (2102)
T PLN03200        241 GQGNEVSVRAEAAGALEALSSQS----KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG  312 (2102)
T ss_pred             ccCCChHHHHHHHHHHHHHhcCC----HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence            7765 478999999999999854    468888889999999998887432        23458888888887766

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=9e-15  Score=139.98  Aligned_cols=221  Identities=17%  Similarity=0.180  Sum_probs=174.1

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhccc--C
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGS--A  156 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~--~  156 (350)
                      |-..|..+...|-+++. +.+||+.++.+|.+|+||+++.+   +    +..+|+-+-+++. |..++..++++++.  +
T Consensus       180 dirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s---~----d~dvqyycttais-nIaVd~~~Rk~Laqaep  250 (550)
T KOG4224|consen  180 DIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKS---G----DLDVQYYCTTAIS-NIAVDRRARKILAQAEP  250 (550)
T ss_pred             hhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhcc---C----ChhHHHHHHHHhh-hhhhhHHHHHHHHhccc
Confidence            44667788988888884 57999999999999999999972   2    3678999989998 88888888888865  5


Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHH
Q 046820          157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS  236 (350)
Q Consensus       157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~  236 (350)
                      ..++.||.+++.|+.+.|-+|..+|.+|++..   +|...|-+ .|.+|.||++|+++.- ...-+.+-++.|+      
T Consensus       251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt---~Yq~eiv~-ag~lP~lv~Llqs~~~-plilasVaCIrni------  319 (550)
T KOG4224|consen  251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDT---EYQREIVE-AGSLPLLVELLQSPMG-PLILASVACIRNI------  319 (550)
T ss_pred             chHHHHHHHHhCCChHHHHHHHHHHhhhcccc---hhhhHHHh-cCCchHHHHHHhCcch-hHHHHHHHHHhhc------
Confidence            59999999999999999999999999999764   66666646 7999999999987632 2333334444444      


Q ss_pred             HHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHH
Q 046820          237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV-SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQ  315 (350)
Q Consensus       237 aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~-S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq  315 (350)
                              +- .++.+-+..++|.+.++|+++..+ +...+-||+++||+|...+    +..+......|++++|..++-
T Consensus       320 --------si-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass----e~n~~~i~esgAi~kl~eL~l  386 (550)
T KOG4224|consen  320 --------SI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS----EHNVSVIRESGAIPKLIELLL  386 (550)
T ss_pred             --------cc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh----hhhhHHHhhcCchHHHHHHHh
Confidence                    34 457777778999999999999876 5668999999999999854    456777789999999988776


Q ss_pred             hcCchHHHHHHHHHHHHH
Q 046820          316 VGCAERTKEKASEVLKLM  333 (350)
Q Consensus       316 ~~~t~~ak~kA~~LLk~l  333 (350)
                       +++-..+..-..-+..|
T Consensus       387 -D~pvsvqseisac~a~L  403 (550)
T KOG4224|consen  387 -DGPVSVQSEISACIAQL  403 (550)
T ss_pred             -cCChhHHHHHHHHHHHH
Confidence             55555666544444444

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.50  E-value=1.8e-12  Score=136.28  Aligned_cols=214  Identities=17%  Similarity=0.155  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHH
Q 046820           84 KDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMI  163 (350)
Q Consensus        84 ~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv  163 (350)
                      ..++.-|-+++.+ ..++.-|.+.|.|+.|+++|.   .+    +.+++-.+++.|- .||+..|||..+.+.|.++.|+
T Consensus       267 rv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ld---r~----n~ellil~v~fLk-kLSi~~ENK~~m~~~giV~kL~  337 (708)
T PF05804_consen  267 RVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLD---RE----NEELLILAVTFLK-KLSIFKENKDEMAESGIVEKLL  337 (708)
T ss_pred             HHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HHcCCHHHHHHHHHcCCHHHHH
Confidence            3466667788754 688888999999999999996   22    3678888989998 8999999999999999999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 046820          164 WFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDG  243 (350)
Q Consensus       164 ~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~  243 (350)
                      ++|.+++.+....|..+|++||.+   +..+..|-+ .|+||.|+.+|.++..                 ...++++|.+
T Consensus       338 kLl~s~~~~l~~~aLrlL~NLSfd---~~~R~~mV~-~GlIPkLv~LL~d~~~-----------------~~val~iLy~  396 (708)
T PF05804_consen  338 KLLPSENEDLVNVALRLLFNLSFD---PELRSQMVS-LGLIPKLVELLKDPNF-----------------REVALKILYN  396 (708)
T ss_pred             HHhcCCCHHHHHHHHHHHHHhCcC---HHHHHHHHH-CCCcHHHHHHhCCCch-----------------HHHHHHHHHH
Confidence            999999999999999999999976   367777745 8999999999987632                 1357788888


Q ss_pred             HhCCHhhHHHhhcCCCChHHHHHHHhccCh-hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHH
Q 046820          244 ICSTDCGRENANDKPLTMPVVVKKILRVSE-LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERT  322 (350)
Q Consensus       244 L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~-~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~a  322 (350)
                      ||..+++|..+. ..++||.+++.++.++. ..+-.+++.+.+++.+.     ++.+.+.+.|+++.|+.......    
T Consensus       397 LS~dd~~r~~f~-~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-----rnaqlm~~g~gL~~L~~ra~~~~----  466 (708)
T PF05804_consen  397 LSMDDEARSMFA-YTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-----RNAQLMCEGNGLQSLMKRALKTR----  466 (708)
T ss_pred             hccCHhhHHHHh-hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-----HHHHHHHhcCcHHHHHHHHHhcc----
Confidence            888889998875 66799999999988754 34445778888888863     47788888888998876554332    


Q ss_pred             HHHHHHHHHHHHhccCCC
Q 046820          323 KEKASEVLKLMNLHRDRL  340 (350)
Q Consensus       323 k~kA~~LLk~l~~~~~~~  340 (350)
                         -.-|+|++|....++
T Consensus       467 ---D~lLlKlIRNiS~h~  481 (708)
T PF05804_consen  467 ---DPLLLKLIRNISQHD  481 (708)
T ss_pred             ---cHHHHHHHHHHHhcC
Confidence               233778888766655

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=1.7e-11  Score=117.68  Aligned_cols=225  Identities=16%  Similarity=0.178  Sum_probs=166.9

Q ss_pred             CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCC
Q 046820           78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSAS  157 (350)
Q Consensus        78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~  157 (350)
                      +|...+++|--.|+.++.+ .+..+-|+++|.+|.++++|++   +    .-...-+.++.+. |+++.+-|-..|++.|
T Consensus       263 ~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs---~----~~plilasVaCIr-nisihplNe~lI~dag  333 (550)
T KOG4224|consen  263 GSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQS---P----MGPLILASVACIR-NISIHPLNEVLIADAG  333 (550)
T ss_pred             CChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhC---c----chhHHHHHHHHHh-hcccccCcccceeccc
Confidence            5678889999999999987 4666789999999999999973   1    1224455668888 8999887888899999


Q ss_pred             cHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHH
Q 046820          158 SMGCMIWFLNSGD-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS  236 (350)
Q Consensus       158 ~l~~Lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~  236 (350)
                      ++.+||++|+-|+ .+.+-+|..+|.+|+...  +.++..|-. .|+||.|..++.|++-               +..+.
T Consensus       334 fl~pLVrlL~~~dnEeiqchAvstLrnLAass--e~n~~~i~e-sgAi~kl~eL~lD~pv---------------svqse  395 (550)
T KOG4224|consen  334 FLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS--EHNVSVIRE-SGAIPKLIELLLDGPV---------------SVQSE  395 (550)
T ss_pred             chhHHHHHHhcCCchhhhhhHHHHHHHHhhhh--hhhhHHHhh-cCchHHHHHHHhcCCh---------------hHHHH
Confidence            9999999999994 569999999999998643  356666634 7999999999998731               12345


Q ss_pred             HHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHh--hchHH-HHHHH
Q 046820          237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQ--VGAFQ-KLLVL  313 (350)
Q Consensus       237 aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~--~G~v~-~LL~l  313 (350)
                      .-+.+..|+-.++-|.++. +.|.+|.++......|...+.+|+++|.++|..--+  =..+.|+..  .+.++ .|...
T Consensus       396 isac~a~Lal~d~~k~~ll-d~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~--YarviEawd~P~~gi~g~L~Rf  472 (550)
T KOG4224|consen  396 ISACIAQLALNDNDKEALL-DSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH--YARVIEAWDHPVQGIQGRLARF  472 (550)
T ss_pred             HHHHHHHHHhccccHHHHh-hcCCcceeecccCccchhhcccHHHHHHhhhhhhHH--HHHHHHHhcCcchhHHHHHHHH
Confidence            5667777777888899996 889999999998889999999999999999985421  123445542  22333 33333


Q ss_pred             HHhcCchHHHHHHHHHHHHH
Q 046820          314 LQVGCAERTKEKASEVLKLM  333 (350)
Q Consensus       314 lq~~~t~~ak~kA~~LLk~l  333 (350)
                      +.+. ..--+..|+..+..|
T Consensus       473 l~S~-~~tf~hia~wTI~qL  491 (550)
T KOG4224|consen  473 LASH-ELTFRHIARWTIQQL  491 (550)
T ss_pred             Hhhh-HHHHHHHHHHHHHHH
Confidence            3443 334555555544433

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=2.9e-10  Score=114.78  Aligned_cols=252  Identities=15%  Similarity=0.165  Sum_probs=199.1

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      |..+|.-+...   .++.-+.+|+..|.++|..+.+.-+.++++|++|.++.+|.+  +     +..++|.|+.+|- |.
T Consensus       111 v~~lV~~l~~~---~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s--~-----~~~v~eQavWALg-NI  179 (514)
T KOG0166|consen  111 VPRLVEFLSRD---DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS--P-----SADVREQAVWALG-NI  179 (514)
T ss_pred             HHHHHHHHccC---CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC--C-----cHHHHHHHHHHHh-cc
Confidence            44555555432   246778999999999999999999999999999999999962  2     3679999999999 88


Q ss_pred             CCCh-hhHhhcccCCcHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820          144 PLEG-EALTHLGSASSMGCMIWFLNSGD-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK  221 (350)
Q Consensus       144 s~~~-e~k~~i~~~~~l~~Lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k  221 (350)
                      .-+. ..|..+.+.|+++.|..++...+ ..-..+++.+|.+|....+.+.....+   ..++|.|+.+|.+. ++.-..
T Consensus       180 agds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v---~~iLp~L~~ll~~~-D~~Vl~  255 (514)
T KOG0166|consen  180 AGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV---APILPALLRLLHST-DEEVLT  255 (514)
T ss_pred             ccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH---HHHHHHHHHHHhcC-CHHHHH
Confidence            8554 66888889999999999998874 467889999999998765312222334   78999999999876 778889


Q ss_pred             HHHHHHHHhhhh-HH---------------------------HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-C
Q 046820          222 AALVVIYHTIAS-SA---------------------------SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV-S  272 (350)
Q Consensus       222 ~Al~aL~~L~~~-~e---------------------------~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~-S  272 (350)
                      ||..+|..|+.. +|                           .||..+.++++..+--...+...+++|.+..++.+. .
T Consensus       256 Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~  335 (514)
T KOG0166|consen  256 DACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPK  335 (514)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcc
Confidence            999999999732 21                           699999999886555555556889999998876543 3


Q ss_pred             hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          273 ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       273 ~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      +.-+..|.=++.+++...    .+..+..+..|.++.|+.+|+.+ .-+.|+.|...+..+.-
T Consensus       336 ~~ikkEAcW~iSNItAG~----~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts  393 (514)
T KOG0166|consen  336 ESIKKEACWTISNITAGN----QEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTS  393 (514)
T ss_pred             hhHHHHHHHHHHHhhcCC----HHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcc
Confidence            345677889999999843    56778888999999999999976 57899999887775543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.27  E-value=4.6e-10  Score=118.28  Aligned_cols=221  Identities=14%  Similarity=0.126  Sum_probs=172.5

Q ss_pred             cCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccC
Q 046820           77 TQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSA  156 (350)
Q Consensus        77 ~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~  156 (350)
                      +++.+...-++.-|+.|+-- .+||..|.+.|+||.|+.++.+   +    +..+++.++.+|+ |||.+++.+..+.+.
T Consensus       301 r~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s---~----~~~l~~~aLrlL~-NLSfd~~~R~~mV~~  371 (708)
T PF05804_consen  301 RENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPS---E----NEDLVNVALRLLF-NLSFDPELRSQMVSL  371 (708)
T ss_pred             CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcC---C----CHHHHHHHHHHHH-HhCcCHHHHHHHHHC
Confidence            35667777788888888855 5799999999999999999962   2    3678999999999 999999999999999


Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH--
Q 046820          157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS--  234 (350)
Q Consensus       157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~--  234 (350)
                      |.++.|+.+|..++  .+..+..+|++||.+   +..+..++. .++|+.|++++-++.+++-..+++..+.||+...  
T Consensus       372 GlIPkLv~LL~d~~--~~~val~iLy~LS~d---d~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn  445 (708)
T PF05804_consen  372 GLIPKLVELLKDPN--FREVALKILYNLSMD---DEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN  445 (708)
T ss_pred             CCcHHHHHHhCCCc--hHHHHHHHHHHhccC---HhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence            99999999998654  567899999999975   378888966 7899999998876645555556677777775321  


Q ss_pred             ---------------------------------------------------------------HHHHHHHHHHhCCHhhH
Q 046820          235 ---------------------------------------------------------------ASALSVLDGICSTDCGR  251 (350)
Q Consensus       235 ---------------------------------------------------------------e~aL~vL~~L~~~~eGr  251 (350)
                                                                                     =.++++|.+|.-..-.-
T Consensus       446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~  525 (708)
T PF05804_consen  446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDW  525 (708)
T ss_pred             HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCH
Confidence                                                                           06888888887666677


Q ss_pred             HHhhcCCCChHHHHHHHhccC--hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhc
Q 046820          252 ENANDKPLTMPVVVKKILRVS--ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVG  317 (350)
Q Consensus       252 ~ai~~~~~~v~~lv~~l~~~S--~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~  317 (350)
                      +.++.+.+.+|-+.+.|..+.  +.-.-.+|-++..+|..     +.+.....+.|.++.|+.+|..-
T Consensus       526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-----~~~A~lL~~sgli~~Li~LL~~k  588 (708)
T PF05804_consen  526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-----PECAPLLAKSGLIPTLIELLNAK  588 (708)
T ss_pred             HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-----HHHHHHHHhCChHHHHHHHHHhh
Confidence            778877888999988886553  22334466666667763     45777777999999999998653

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=1e-09  Score=110.91  Aligned_cols=250  Identities=14%  Similarity=0.097  Sum_probs=189.3

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcc--ccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESES--NKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL  141 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~--nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~  141 (350)
                      ....++.+.+    .+.+.+..+..++|.+......  ....|. .|+||-+|.+|..  +.    ++.++.+|..+|. 
T Consensus        68 ~~~~~~~~~S----~~~~~q~~a~~~~rkllS~~~~ppi~~vi~-~G~v~~lV~~l~~--~~----~~~lq~eAAWaLT-  135 (514)
T KOG0166|consen   68 LELMLAALYS----DDPQQQLTATQAFRKLLSKERNPPIDEVIQ-SGVVPRLVEFLSR--DD----NPTLQFEAAWALT-  135 (514)
T ss_pred             hHHHHHHHhC----CCHHHHHHHHHHHHHHHccCCCCCHHHHHH-cCcHHHHHHHHcc--CC----ChhHHHHHHHHHH-
Confidence            4455666655    3567788899999877654322  222344 4999999999962  21    3678999999999 


Q ss_pred             hCCCCh-hhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHH
Q 046820          142 LFPLEG-EALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTAT  220 (350)
Q Consensus       142 ~Ls~~~-e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~  220 (350)
                      |++... +.-+.+.+.|+++.++++|.+.+.+.+++|+.+|-+++.+.  +.++..+=. .|++++|+.++.....-.-.
T Consensus       136 nIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds--~~~Rd~vl~-~g~l~pLl~~l~~~~~~~~l  212 (514)
T KOG0166|consen  136 NIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS--PDCRDYVLS-CGALDPLLRLLNKSDKLSML  212 (514)
T ss_pred             HHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC--hHHHHHHHh-hcchHHHHHHhccccchHHH
Confidence            887554 55567779999999999999999999999999999999765  578877635 89999999999876444577


Q ss_pred             HHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhcc
Q 046820          221 KAALVVIYHTIASS----------------------------ASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRV  271 (350)
Q Consensus       221 k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~  271 (350)
                      +.+..+|.|||...                            ..|.-+|..|+.. .|.-..+ .+.|.+|.||+.|...
T Consensus       213 Rn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~v-i~~gvv~~LV~lL~~~  291 (514)
T KOG0166|consen  213 RNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMV-IDAGVVPRLVDLLGHS  291 (514)
T ss_pred             HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH-HHccchHHHHHHHcCC
Confidence            88999999998521                            2677778878754 4444444 5899999999988877


Q ss_pred             ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 046820          272 SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM  333 (350)
Q Consensus       272 S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l  333 (350)
                      +....--|+..+.++...    ++...+.++..|+++.|..++...-....|+-|..++...
T Consensus       292 ~~~v~~PaLRaiGNIvtG----~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI  349 (514)
T KOG0166|consen  292 SPKVVTPALRAIGNIVTG----SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNI  349 (514)
T ss_pred             CcccccHHHhhccceeec----cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh
Confidence            777776788888887774    4678888899999999988887544555667677666553

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.02  E-value=4.2e-08  Score=92.20  Aligned_cols=203  Identities=15%  Similarity=0.106  Sum_probs=156.1

Q ss_pred             hhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 046820          103 CIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLT  182 (350)
Q Consensus       103 ~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~  182 (350)
                      .+-+++-...|+.+|..  ..    ++.++|.|+.+|. +.+-.+.++.+|.+.|+++.+..+|...+...|+.|..+|.
T Consensus         7 ~~l~~~~l~~Ll~lL~~--t~----dp~i~e~al~al~-n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~   79 (254)
T PF04826_consen    7 NILEAQELQKLLCLLES--TE----DPFIQEKALIALG-NSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALN   79 (254)
T ss_pred             CCcCHHHHHHHHHHHhc--CC----ChHHHHHHHHHHH-hhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHH
Confidence            34567788999999973  22    4778999999999 88777789999999999999999999999999999999999


Q ss_pred             HHhcCCCchhHHhhhhchhhHHHHHHHHhcCC-CChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCCh
Q 046820          183 ELVSSDSDQRKVNVLSENEGAIEALFKLIEEP-ISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTM  261 (350)
Q Consensus       183 ~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~-~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v  261 (350)
                      +|+...   ++...|   ...|+.+.+.+.+. .+.....++              |.+|.+|+...+...-+.   ..|
T Consensus        80 Nls~~~---en~~~I---k~~i~~Vc~~~~s~~lns~~Q~ag--------------LrlL~nLtv~~~~~~~l~---~~i  136 (254)
T PF04826_consen   80 NLSVND---ENQEQI---KMYIPQVCEETVSSPLNSEVQLAG--------------LRLLTNLTVTNDYHHMLA---NYI  136 (254)
T ss_pred             hcCCCh---hhHHHH---HHHHHHHHHHHhcCCCCCHHHHHH--------------HHHHHccCCCcchhhhHH---hhH
Confidence            998763   677777   35677777655443 233344444              445555555555655553   469


Q ss_pred             HHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCCC
Q 046820          262 PVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRL  340 (350)
Q Consensus       262 ~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~~  340 (350)
                      |.++.++..|+...+.++..+|++|+.+     .....+++...+++.++.+++...+...-..+-.+...+...|+..
T Consensus       137 ~~ll~LL~~G~~~~k~~vLk~L~nLS~n-----p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~  210 (254)
T PF04826_consen  137 PDLLSLLSSGSEKTKVQVLKVLVNLSEN-----PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE  210 (254)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhccC-----HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence            9999999999999999999999999986     3588999999999999999987654455566666666666666644

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=98.84  E-value=4.7e-08  Score=106.54  Aligned_cols=242  Identities=15%  Similarity=0.141  Sum_probs=173.5

Q ss_pred             HHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHh---ccc---cccccchHHHHHHHHHHHhhCCCCh-hhHhhc-c
Q 046820           83 CKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFES---FSK---TCLDENVSVLEEILSTLILLFPLEG-EALTHL-G  154 (350)
Q Consensus        83 ~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~---~~~---~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i-~  154 (350)
                      .+.|+..|..++++ ++.|+.|.+.|++.++..||.-   |+.   ++ .....++.-|.-+|- ||-++| .||..+ .
T Consensus       315 lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd-~~~~aLRrYa~MALT-NLTFGDv~NKa~LCs  391 (2195)
T KOG2122|consen  315 LCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETND-GECNALRRYAGMALT-NLTFGDVANKATLCS  391 (2195)
T ss_pred             hHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhh-ccccccccchhhhhh
Confidence            35899999999986 7899999999999999888752   221   11 112235666888888 999988 678777 5


Q ss_pred             cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh-
Q 046820          155 SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS-  233 (350)
Q Consensus       155 ~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~-  233 (350)
                      ..|++++||..|.+...+--+--+.+|.+||=-.| ...|..+ +..|-+.+|+...-........|+-|.+|+||+-+ 
T Consensus       392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD-~nmKkvL-rE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHc  469 (2195)
T KOG2122|consen  392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRAD-SNMKKVL-RETGSVTALAACALRNKKESTLKAVLSALWNLSAHC  469 (2195)
T ss_pred             hhhHHHHHHHHHhcChHHHHHHHHHHHHhcccccc-ccHHHHH-HhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcc
Confidence            68999999999999887888889999999985443 4667777 55788888886543322335789999999999532 


Q ss_pred             --H-------HHHHHH-----------------------HHH----HhCCHhhHHHhhcCCCChHHHHHHHhccChhHHH
Q 046820          234 --S-------ASALSV-----------------------LDG----ICSTDCGRENANDKPLTMPVVVKKILRVSELATE  277 (350)
Q Consensus       234 --~-------e~aL~v-----------------------L~~----L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E  277 (350)
                        |       +-||++                       |.+    +++|+.=|.-+ ...+|+..|+..|...|-..--
T Consensus       470 teNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQIL-R~~NCLq~LLQ~LKS~SLTiVS  548 (2195)
T KOG2122|consen  470 TENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQIL-RRHNCLQTLLQHLKSHSLTIVS  548 (2195)
T ss_pred             cccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHH-HHhhHHHHHHHHhhhcceEEee
Confidence              2       123333                       332    34455444433 4667777777777777777778


Q ss_pred             HHHHHHHHHccccccchHHHHHHHH-hhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          278 LSVSILWKLCMNEKREEKTAFVEAL-QVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       278 ~Av~iL~~Lc~~~~~~~~~~~~~~~-~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      +|-++||||.-.++    +. ++|+ +.|+|+.|.-|+.+--..-+.--|..|..+|+.
T Consensus       549 NaCGTLWNLSAR~p----~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  549 NACGTLWNLSARSP----ED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             cchhhhhhhhcCCH----HH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence            89999999988664    34 4555 999999999888865555566666666666654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=98.84  E-value=9.9e-08  Score=91.49  Aligned_cols=246  Identities=15%  Similarity=0.111  Sum_probs=177.0

Q ss_pred             hHHHHHHHhHhhhccCChhHHHHHHHHHHHHH-hcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820           63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWA-KESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL  141 (350)
Q Consensus        63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~La-k~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~  141 (350)
                      +...+.+++.+.    |.+.+.+|+.+.|.+. ++..--=..+.++|.+|-+++++.+.  .    ..-.+=+|..+|- 
T Consensus        72 elp~lt~~l~Sd----Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~--q----~~mlqfEAaWalT-  140 (526)
T COG5064          72 ELPQLTQQLFSD----DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI--Q----RDMLQFEAAWALT-  140 (526)
T ss_pred             hhHHHHHHHhhh----HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc--c----hhHHHHHHHHHHh-
Confidence            455666667663    6788999999998765 44322333466799999999999621  1    1224556778888 


Q ss_pred             hCCCChhhH-hhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC-CChHH
Q 046820          142 LFPLEGEAL-THLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP-ISPTA  219 (350)
Q Consensus       142 ~Ls~~~e~k-~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~-~~~~a  219 (350)
                      |.+.+..++ +++++.|+++.++.+|.+++.+.|++|+.+|-+++.+.  +.++..+=. .|++++|+.++.+. .+-.-
T Consensus       141 NiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS--~~~RD~vL~-~galeplL~ll~ss~~~ism  217 (526)
T COG5064         141 NIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS--EGCRDYVLQ-CGALEPLLGLLLSSAIHISM  217 (526)
T ss_pred             hhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCc--hhHHHHHHh-cCchHHHHHHHHhccchHHH
Confidence            887665444 45578999999999999999999999999999998664  477777645 79999999999865 34577


Q ss_pred             HHHHHHHHHHhhhh-------H--H-------------------HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc
Q 046820          220 TKAALVVIYHTIAS-------S--A-------------------SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV  271 (350)
Q Consensus       220 ~k~Al~aL~~L~~~-------~--e-------------------~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~  271 (350)
                      .+.+-..|.|||.-       .  .                   .|.=++.-|+..+.-+-.+.-+.|+.+-||+.|...
T Consensus       218 lRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~  297 (526)
T COG5064         218 LRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE  297 (526)
T ss_pred             HHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc
Confidence            88999999999841       1  1                   455556666665433333334889999999999887


Q ss_pred             ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHH
Q 046820          272 SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKAS  327 (350)
Q Consensus       272 S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~  327 (350)
                      |..-+--|.....++...+    +...+..+.-|++..+..+|.+. -.+.|+-|.
T Consensus       298 sa~iqtPalR~vGNIVTG~----D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaC  348 (526)
T COG5064         298 SAKIQTPALRSVGNIVTGS----DDQTQVIINCGALKAFRSLLSSP-KENIRKEAC  348 (526)
T ss_pred             cccccCHHHHhhcCeeecC----ccceehheecccHHHHHHHhcCh-hhhhhhhhh
Confidence            7766777778887887743    34556666889888877776643 345555443

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=98.71  E-value=2.4e-07  Score=96.74  Aligned_cols=197  Identities=17%  Similarity=0.147  Sum_probs=155.2

Q ss_pred             chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820           62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL  141 (350)
Q Consensus        62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~  141 (350)
                      .+..+.+.-+.+.    ++..|..|...|.-+++.+.+-|..+.+-|.||-|+.+|.   +.    +.+++.+|..+|. 
T Consensus       233 ~~lpe~i~mL~~q----~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~---~~----~~evq~~acgaLR-  300 (717)
T KOG1048|consen  233 PTLPEVISMLMSQ----DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD---HR----NDEVQRQACGALR-  300 (717)
T ss_pred             cccHHHHHHHhcc----ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc---CC----cHHHHHHHHHHHH-
Confidence            3455666666653    5567778999999999999999999999999999999997   33    4789999999999 


Q ss_pred             hCCCCh---hhHhhcccCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCC-
Q 046820          142 LFPLEG---EALTHLGSASSMGCMIWFLNS-GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPIS-  216 (350)
Q Consensus       142 ~Ls~~~---e~k~~i~~~~~l~~Lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~-  216 (350)
                      ||..+.   +||-.|.+-+.++.++++|+. ++.+.|++.+.+|-+|++.+   ..|..|  ...+++.|-+-+-.+.+ 
T Consensus       301 NLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D---~lK~~i--i~~al~tLt~~vI~P~Sg  375 (717)
T KOG1048|consen  301 NLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND---ALKMLI--ITSALSTLTDNVIIPHSG  375 (717)
T ss_pred             hhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh---HHHHHH--HHHHHHHHHHhhcccccc
Confidence            997544   688899999999999999997 79999999999999999873   677777  35777777765543211 


Q ss_pred             ------h------HHHHHHHHHHHHhhhhHHHHHHHHHHHhC-CHhhHHHhhcCCCChHHHHHHHhc------cChhHHH
Q 046820          217 ------P------TATKAALVVIYHTIASSASALSVLDGICS-TDCGRENANDKPLTMPVVVKKILR------VSELATE  277 (350)
Q Consensus       217 ------~------~a~k~Al~aL~~L~~~~e~aL~vL~~L~~-~~eGr~ai~~~~~~v~~lv~~l~~------~S~~~~E  277 (350)
                            +      .-.+              -+-..|.++.+ .+|+|+++....|.|-.|+-.+..      .++...|
T Consensus       376 w~~~~~~~~~~~~~vf~--------------n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VE  441 (717)
T KOG1048|consen  376 WEEEPAPRKAEDSTVFR--------------NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVE  441 (717)
T ss_pred             cCCCCcccccccceeee--------------hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHH
Confidence                  1      1112              34455566655 689999999999999999888752      3467889


Q ss_pred             HHHHHHHHHccc
Q 046820          278 LSVSILWKLCMN  289 (350)
Q Consensus       278 ~Av~iL~~Lc~~  289 (350)
                      ++|.+|.+|...
T Consensus       442 NcvCilRNLSYr  453 (717)
T KOG1048|consen  442 NCVCILRNLSYR  453 (717)
T ss_pred             HHHHHHhhcCch
Confidence            999999999764

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.64  E-value=4.7e-07  Score=73.27  Aligned_cols=117  Identities=15%  Similarity=0.233  Sum_probs=95.1

Q ss_pred             hhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHH
Q 046820          103 CIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLL  181 (350)
Q Consensus       103 ~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL  181 (350)
                      .+.+.|+++.|+.+|.   ++    +..+++.++.+|. ++..+ ++....+.+.+.++.++.+|...+.+.+.+|+.+|
T Consensus         2 ~~~~~~~i~~l~~~l~---~~----~~~~~~~a~~~l~-~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L   73 (120)
T cd00020           2 AVIQAGGLPALVSLLS---SS----DENVQREAAWALS-NLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWAL   73 (120)
T ss_pred             hHHHcCChHHHHHHHH---cC----CHHHHHHHHHHHH-HHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHH
Confidence            3567899999999996   22    3678999999998 77755 56666666789999999999999999999999999


Q ss_pred             HHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 046820          182 TELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTI  231 (350)
Q Consensus       182 ~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~  231 (350)
                      .+|+...  +.....+.. .|+++.|++++.++ +....+.++.+|.+||
T Consensus        74 ~~l~~~~--~~~~~~~~~-~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~  119 (120)
T cd00020          74 RNLAAGP--EDNKLIVLE-AGGVPKLVNLLDSS-NEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHccCc--HHHHHHHHH-CCChHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence            9998764  355555534 79999999999876 6677777888887776

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=98.64  E-value=8.3e-07  Score=92.75  Aligned_cols=234  Identities=14%  Similarity=0.118  Sum_probs=176.8

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcc--ccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESES--NKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL  141 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~--nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~  141 (350)
                      |..+|..+.+.    ..+.+..|...||+|...+..  |+-.|.+.|.||.|+++|..  ..    |.+++|++-.+|. 
T Consensus       277 I~kLv~Ll~~~----~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~--t~----D~ev~e~iTg~LW-  345 (717)
T KOG1048|consen  277 IPKLVALLDHR----NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRH--TQ----DDEVRELITGILW-  345 (717)
T ss_pred             HHHHHHHhcCC----cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHh--hc----chHHHHHHHHHHh-
Confidence            55566666654    457888999999999988776  99999999999999999972  22    4778888866666 


Q ss_pred             hCCCChhhHhhcccCCcHHHHHHHHc---c--CC---------HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820          142 LFPLEGEALTHLGSASSMGCMIWFLN---S--GD---------LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEAL  207 (350)
Q Consensus       142 ~Ls~~~e~k~~i~~~~~l~~Lv~~L~---~--gs---------~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L  207 (350)
                      ||+-.|..|..|.. +++..|..-+-   +  +.         .+.=.|++..|.++++..  ++.++.+.+..|.|.+|
T Consensus       346 NLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~--~eaR~~mr~c~GLIdaL  422 (717)
T KOG1048|consen  346 NLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAG--QEAREQMRECDGLIDAL  422 (717)
T ss_pred             cccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchh--HHHHHHHhhccchHHHH
Confidence            99977766665432 23333333221   1  11         122248999999999865  48888998889999999


Q ss_pred             HHHhc-----CCCChHHHHHHHHHHHHhhhhH------------------------------------------------
Q 046820          208 FKLIE-----EPISPTATKAALVVIYHTIASS------------------------------------------------  234 (350)
Q Consensus       208 V~lL~-----~~~~~~a~k~Al~aL~~L~~~~------------------------------------------------  234 (350)
                      +..++     +..+...+.+++-+|.||+..-                                                
T Consensus       423 ~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~p  502 (717)
T KOG1048|consen  423 LFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIP  502 (717)
T ss_pred             HHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCc
Confidence            99997     2346688999999999995310                                                


Q ss_pred             ----------------------------------HHHHHHHHHHhCC-----HhhHHHhhcCCCChHHHHHHHhccChhH
Q 046820          235 ----------------------------------ASALSVLDGICST-----DCGRENANDKPLTMPVVVKKILRVSELA  275 (350)
Q Consensus       235 ----------------------------------e~aL~vL~~L~~~-----~eGr~ai~~~~~~v~~lv~~l~~~S~~~  275 (350)
                                                        |.+..+|.+|+.+     ..-|..+....-+.|++++++....+..
T Consensus       503 e~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~v  582 (717)
T KOG1048|consen  503 ERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDV  582 (717)
T ss_pred             ccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchH
Confidence                                              5899999999876     4556677667888999999999999999


Q ss_pred             HHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhc
Q 046820          276 TELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVG  317 (350)
Q Consensus       276 ~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~  317 (350)
                      .+.+.++|.+|...-.     ...+ +.-++++.|+..|...
T Consensus       583 v~s~a~~LrNls~d~r-----nk~l-igk~a~~~lv~~Lp~~  618 (717)
T KOG1048|consen  583 VRSAAGALRNLSRDIR-----NKEL-IGKYAIPDLVRCLPGS  618 (717)
T ss_pred             HHHHHHHHhhhccCch-----hhhh-hhcchHHHHHHhCcCC
Confidence            9999999999998542     4334 4478899999888644

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.61  E-value=7.4e-07  Score=72.09  Aligned_cols=117  Identities=20%  Similarity=0.218  Sum_probs=92.2

Q ss_pred             ccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 046820          154 GSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS  233 (350)
Q Consensus       154 ~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~  233 (350)
                      .+.|.++.++.+|.+++.+.|..|+.+|.+++...  +.....+-. .|+++.|++++.++ +++..+.|+.+|.+++. 
T Consensus         4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~-~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~-   78 (120)
T cd00020           4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGN--NDNIQAVVE-AGGLPALVQLLKSE-DEEVVKAALWALRNLAA-   78 (120)
T ss_pred             HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--HHHHHHHHH-CCChHHHHHHHhCC-CHHHHHHHHHHHHHHcc-
Confidence            35689999999999999999999999999999764  255555524 69999999999976 66776766666666653 


Q ss_pred             HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820          234 SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM  288 (350)
Q Consensus       234 ~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~  288 (350)
                                   ............|.++.+++.+...+...+++|..+|.+||.
T Consensus        79 -------------~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          79 -------------GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             -------------CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence                         222233333467899999999988888999999999999983

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.55  E-value=6.8e-06  Score=77.33  Aligned_cols=197  Identities=15%  Similarity=0.115  Sum_probs=142.9

Q ss_pred             CCcchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHH
Q 046820           59 VCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILST  138 (350)
Q Consensus        59 ~~~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~  138 (350)
                      +++.++..++.-|...   .|+..+..++-.+-..+ ..+.|+..|.+.|+++.+..+|.   .+    ++.+++.|+.+
T Consensus         9 l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~---~p----~~~vr~~AL~a   77 (254)
T PF04826_consen    9 LEAQELQKLLCLLEST---EDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLN---DP----NPSVREKALNA   77 (254)
T ss_pred             cCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcC---CC----ChHHHHHHHHH
Confidence            3456788888888764   36778888888888865 45799999999999999999996   22    47789999999


Q ss_pred             HHhhCCCChhhHhhcccCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCC
Q 046820          139 LILLFPLEGEALTHLGSASSMGCMIWFLNSG--DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPIS  216 (350)
Q Consensus       139 L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~  216 (350)
                      |. ||+.+.+|+..|..  .++.+.....++  +.+....+..+|.+|+-..   ++...+   .+.|+.|+.+|..| +
T Consensus        78 L~-Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~---~~~~~l---~~~i~~ll~LL~~G-~  147 (254)
T PF04826_consen   78 LN-NLSVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN---DYHHML---ANYIPDLLSLLSSG-S  147 (254)
T ss_pred             HH-hcCCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc---chhhhH---HhhHHHHHHHHHcC-C
Confidence            99 99988888877742  577777766665  5677788999999998553   566666   35799999999987 4


Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-ChhHHHHHHHHHHHHccccc
Q 046820          217 PTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV-SELATELSVSILWKLCMNEK  291 (350)
Q Consensus       217 ~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~-S~~~~E~Av~iL~~Lc~~~~  291 (350)
                      ...+--              +|++|-+|+..+.-..+++ .+.+.+.++.++.+. +...--.++.+.-+|..+-+
T Consensus       148 ~~~k~~--------------vLk~L~nLS~np~~~~~Ll-~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~  208 (254)
T PF04826_consen  148 EKTKVQ--------------VLKVLVNLSENPDMTRELL-SAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK  208 (254)
T ss_pred             hHHHHH--------------HHHHHHHhccCHHHHHHHH-hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence            444444              4555555555555445554 345677887655443 34456777777777866543

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=0.00014  Score=70.12  Aligned_cols=230  Identities=12%  Similarity=0.203  Sum_probs=165.5

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChh----------
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGE----------  148 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e----------  148 (350)
                      +.+..+..+.-++.-+-.++.||..+.+.|+.|.+...|.  +++    ...+..++..++. .|-.+|+          
T Consensus       160 ~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~--~~g----k~~~VRel~~a~r-~l~~dDDiRV~fg~ah~  232 (461)
T KOG4199|consen  160 SEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLN--REG----KTRTVRELYDAIR-ALLTDDDIRVVFGQAHG  232 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHc--ccC----ccHHHHHHHHHHH-HhcCCCceeeecchhhH
Confidence            3345566777788888888999999999999999998885  233    1234444445555 3333442          


Q ss_pred             hHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHH
Q 046820          149 ALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVI  227 (350)
Q Consensus       149 ~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL  227 (350)
                      .-+.|+..+.+..|++.|+-| ++..=..+..+|..|+-.   +++|..|.+ .|.+..|++++.+.+. +..+      
T Consensus       233 hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr---~E~C~~I~e-~GGl~tl~~~i~d~n~-~~~r------  301 (461)
T KOG4199|consen  233 HARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR---DEICKSIAE-SGGLDTLLRCIDDSNE-QGNR------  301 (461)
T ss_pred             HHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH---HHHHHHHHH-ccCHHHHHHHHhhhch-hhHH------
Confidence            233555566899999999988 777777888899999854   377888866 8999999999987533 3333      


Q ss_pred             HHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhhc
Q 046820          228 YHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV--SELATELSVSILWKLCMNEKREEKTAFVEALQVG  305 (350)
Q Consensus       228 ~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~--S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G  305 (350)
                          ..+..++.+|..|++.+.-+..|+ +.|+.+.++..+.+.  +|.--+.+..++.-||-..++    .-..+++.|
T Consensus       302 ----~l~k~~lslLralAG~DsvKs~IV-~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pd----hsa~~ie~G  372 (461)
T KOG4199|consen  302 ----TLAKTCLSLLRALAGSDSVKSTIV-EKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPD----HSAKAIEAG  372 (461)
T ss_pred             ----HHHHHHHHHHHHHhCCCchHHHHH-HhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcc----hHHHHHhcc
Confidence                123578899999999999999996 788899999999885  467778888888888987763    455666777


Q ss_pred             hHHHHHHHHHhcC-chHHHHHHHHHHHHHHh
Q 046820          306 AFQKLLVLLQVGC-AERTKEKASEVLKLMNL  335 (350)
Q Consensus       306 ~v~~LL~llq~~~-t~~ak~kA~~LLk~l~~  335 (350)
                      +-.-.+.-|..-. -...++.|..++|.+-.
T Consensus       373 ~a~~avqAmkahP~~a~vQrnac~~IRNiv~  403 (461)
T KOG4199|consen  373 AADLAVQAMKAHPVAAQVQRNACNMIRNIVV  403 (461)
T ss_pred             hHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            6555555554321 23566777777777754

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=98.31  E-value=3.5e-05  Score=74.31  Aligned_cols=233  Identities=15%  Similarity=0.099  Sum_probs=161.8

Q ss_pred             hHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCCcH
Q 046820           81 VGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSASSM  159 (350)
Q Consensus        81 ~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l  159 (350)
                      -.+.+|.-.|-++++.....-+.++++|++|.++.+|.+  +     +.++.|.++.+|- |..=+. ..+..+-.-|++
T Consensus       130 mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s--~-----~~~V~eQavWALG-NiAGDS~~~RD~vL~~gal  201 (526)
T COG5064         130 MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS--T-----EDDVREQAVWALG-NIAGDSEGCRDYVLQCGAL  201 (526)
T ss_pred             HHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC--c-----hHHHHHHHHHHhc-cccCCchhHHHHHHhcCch
Confidence            456789999999999888888889999999999999962  2     3568999999999 887444 568888888999


Q ss_pred             HHHHHHHccCC--HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh-HH-
Q 046820          160 GCMIWFLNSGD--LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS-SA-  235 (350)
Q Consensus       160 ~~Lv~~L~~gs--~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~-~e-  235 (350)
                      +++..+|.+..  ..-=.||..+|-+|.....-+..-..|   ..++|.|.+|+... ++.-.-||..+|..|+.- +| 
T Consensus       202 eplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i---sqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~  277 (526)
T COG5064         202 EPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI---SQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEK  277 (526)
T ss_pred             HHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH---HHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHH
Confidence            99999998763  455568999999997543112222234   57899999999866 778889999999888642 22 


Q ss_pred             --------------------------HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccc
Q 046820          236 --------------------------SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMN  289 (350)
Q Consensus       236 --------------------------~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~  289 (350)
                                                -+|....++.+-.+-...+....|+++++-.+|..-...-+..|-=.+.++-. 
T Consensus       278 i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA-  356 (526)
T COG5064         278 IQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA-  356 (526)
T ss_pred             HHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc-
Confidence                                      45566666665444444444566666666555433222222222222333322 


Q ss_pred             cccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHH
Q 046820          290 EKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVL  330 (350)
Q Consensus       290 ~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LL  330 (350)
                         ++-+..+..+....++.|..+|.+- .-+.|+-|..-+
T Consensus       357 ---Gnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAi  393 (526)
T COG5064         357 ---GNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAI  393 (526)
T ss_pred             ---CCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHH
Confidence               3345667777999999999888865 456666665443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=98.30  E-value=1.5e-05  Score=87.76  Aligned_cols=245  Identities=15%  Similarity=0.099  Sum_probs=168.2

Q ss_pred             HHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHh---------cccccc--ccchHHHHH
Q 046820           66 EINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFES---------FSKTCL--DENVSVLEE  134 (350)
Q Consensus        66 ~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~---------~~~~~~--~~~~~~~e~  134 (350)
                      .+++.+.... .++-+.+..|=.+|.++....+..++-=.+.-+.++|=.+...         .+.+.+  +.+..-+-.
T Consensus       239 LLvQilH~~d-~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lca  317 (2195)
T KOG2122|consen  239 LLVQILHGPD-DEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCA  317 (2195)
T ss_pred             HHHHHhhCCc-hhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHH
Confidence            3444443322 1244555667777877776655433333333344444433221         011100  122223446


Q ss_pred             HHHHHHhhCCCChhhHhhcccCCcHHHHHHHHcc-----C-------CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhh
Q 046820          135 ILSTLILLFPLEGEALTHLGSASSMGCMIWFLNS-----G-------DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEG  202 (350)
Q Consensus       135 Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~-----g-------s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g  202 (350)
                      |+-+|. -+++++|.++.+-+-|.|+.|..+|.-     |       ...-|.+|..+|.+|.-.+  ..+|..+....|
T Consensus       318 A~~~lM-K~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGD--v~NKa~LCs~rg  394 (2195)
T KOG2122|consen  318 ALCTLM-KLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGD--VANKATLCSQRG  394 (2195)
T ss_pred             HHHHHH-HhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccccc--ccchhhhhhhhh
Confidence            888888 699999999998888999999887743     2       3567889999999998553  478998888899


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHhhh---hH---------------------------HHHHHHHHHHhC-CHhhH
Q 046820          203 AIEALFKLIEEPISPTATKAALVVIYHTIA---SS---------------------------ASALSVLDGICS-TDCGR  251 (350)
Q Consensus       203 ~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~---~~---------------------------e~aL~vL~~L~~-~~eGr  251 (350)
                      +|+.+|..|.+. +.....--..+|.||+=   .|                           ...|.+|=||+. |-|.+
T Consensus       395 fMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK  473 (2195)
T KOG2122|consen  395 FMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK  473 (2195)
T ss_pred             HHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence            999999999764 22455555667777741   00                           367888999977 78999


Q ss_pred             HHhhcCCCChHHHHHHHhccCh----hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh
Q 046820          252 ENANDKPLTMPVVVKKILRVSE----LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV  316 (350)
Q Consensus       252 ~ai~~~~~~v~~lv~~l~~~S~----~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~  316 (350)
                      ++|+...|++..||.+|..-++    .--|+|-+||.+|..+-++ .+.+++...+..-++.||..|-+
T Consensus       474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt-~E~yRQILR~~NCLq~LLQ~LKS  541 (2195)
T KOG2122|consen  474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIAT-CEDYRQILRRHNCLQTLLQHLKS  541 (2195)
T ss_pred             hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhc-cchHHHHHHHhhHHHHHHHHhhh
Confidence            9999999999999999875432    3469999999999887663 34566666788888888888754

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.15  E-value=0.0025  Score=65.79  Aligned_cols=245  Identities=16%  Similarity=0.157  Sum_probs=171.2

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCc
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASS  158 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~  158 (350)
                      ++..+.-+++.|.+++.+++.--..+.+.++++.++.+|.   ++    +.++.+.|+.+|. .+.-.+..-..+..++.
T Consensus        90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~---~~----d~~Va~~A~~~L~-~l~~~~~~~~~l~~~~~  161 (503)
T PF10508_consen   90 SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR---DP----DLSVAKAAIKALK-KLASHPEGLEQLFDSNL  161 (503)
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc---CC----cHHHHHHHHHHHH-HHhCCchhHHHHhCcch
Confidence            5567777899999999888776777888899999999996   33    4778899999998 56544444445556667


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH----
Q 046820          159 MGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS----  234 (350)
Q Consensus       159 l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~----  234 (350)
                      +..|..++.+.+...|.....++-.+++..  ++....+-. .|+++.+++-|.++ +.=.+.+++..|..|+...    
T Consensus       162 ~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S--~~~~~~~~~-sgll~~ll~eL~~d-DiLvqlnalell~~La~~~~g~~  237 (503)
T PF10508_consen  162 LSKLKSLMSQSSDIVRCRVYELLVEIASHS--PEAAEAVVN-SGLLDLLLKELDSD-DILVQLNALELLSELAETPHGLQ  237 (503)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHhcC--HHHHHHHHh-ccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcChhHHH
Confidence            999999998877778888888999998765  355555534 79999999999874 6667788999999886421    


Q ss_pred             ----------------------------------------------------------------------HHHHHHHHHH
Q 046820          235 ----------------------------------------------------------------------ASALSVLDGI  244 (350)
Q Consensus       235 ----------------------------------------------------------------------e~aL~vL~~L  244 (350)
                                                                                            ..|+.+|+.+
T Consensus       238 yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~i  317 (503)
T PF10508_consen  238 YLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQI  317 (503)
T ss_pred             HHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence                                                                                  2789999999


Q ss_pred             hCCHhhHHHh-hcCCCChHHHHHHHhc----cChhHHHHHHHHHHHHcccccc-chHHH---HHH---HHhhchHHHHHH
Q 046820          245 CSTDCGRENA-NDKPLTMPVVVKKILR----VSELATELSVSILWKLCMNEKR-EEKTA---FVE---ALQVGAFQKLLV  312 (350)
Q Consensus       245 ~~~~eGr~ai-~~~~~~v~~lv~~l~~----~S~~~~E~Av~iL~~Lc~~~~~-~~~~~---~~~---~~~~G~v~~LL~  312 (350)
                      +++.+|+..+ ..+...+..+++.+..    ++..-+-.+...|.++-....+ .++..   ...   .+..+-...++.
T Consensus       318 gst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~  397 (503)
T PF10508_consen  318 GSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLM  397 (503)
T ss_pred             hCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHH
Confidence            9999999999 6667778888887764    3334567777777777443322 11111   111   111222221222


Q ss_pred             HHHhcCchHHHHHHHHHHHHHHh
Q 046820          313 LLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       313 llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      -+-...=+..|--|-.+|+.+..
T Consensus       398 ~~~~qPF~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  398 SLLKQPFPELRCAAYRLLQALAA  420 (503)
T ss_pred             HHhcCCchHHHHHHHHHHHHHhc
Confidence            22223226778887777776655

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.93  E-value=1.2e-06  Score=66.71  Aligned_cols=27  Identities=30%  Similarity=0.359  Sum_probs=22.8

Q ss_pred             ccccccccccCCcccCCCCCCcccCCccc
Q 046820           22 KETGASLIEKDPVTTTPRNGITYDRVNIL   50 (350)
Q Consensus        22 ~~~~~~eiM~DPVtl~~~TG~TYDR~sIe   50 (350)
                      ..-...+||+|||+++  +|+||||++|+
T Consensus         6 ~CpIt~~lM~dPVi~~--~G~tyer~~I~   32 (73)
T PF04564_consen    6 LCPITGELMRDPVILP--SGHTYERSAIE   32 (73)
T ss_dssp             B-TTTSSB-SSEEEET--TSEEEEHHHHH
T ss_pred             CCcCcCcHhhCceeCC--cCCEEcHHHHH
Confidence            3456789999999999  99999999998

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.00086  Score=67.43  Aligned_cols=202  Identities=14%  Similarity=0.127  Sum_probs=139.8

Q ss_pred             ccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHH
Q 046820           98 ESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNA  177 (350)
Q Consensus        98 ~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~A  177 (350)
                      .+|+..|.+.|.|.-|+.++..   .    +++.....+..|+ |||.+...+..++..|-+|-++.+|.+.+.  +.-|
T Consensus       335 ~eNK~~M~~~~iveKL~klfp~---~----h~dL~~~tl~Llf-NlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA  404 (791)
T KOG1222|consen  335 DENKIVMEQNGIVEKLLKLFPI---Q----HPDLRKATLMLLF-NLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIA  404 (791)
T ss_pred             ccchHHHHhccHHHHHHHhcCC---C----CHHHHHHHHHHhh-hccccccccHHHhhccchHHHHHHhCCccc--chhh
Confidence            5899999999999999999851   2    4667777888888 999988888888899999999999987643  3458


Q ss_pred             HHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH-----------------------
Q 046820          178 VLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS-----------------------  234 (350)
Q Consensus       178 a~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~-----------------------  234 (350)
                      ...|+.+|.++   ..|...+- .++|+-|.+.+-.+.+.+-..+-+..-.|||.+.                       
T Consensus       405 ~~~lYh~S~dD---~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~  480 (791)
T KOG1222|consen  405 LNMLYHLSCDD---DAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSR  480 (791)
T ss_pred             hhhhhhhccCc---HHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhccc
Confidence            99999998763   78888844 8999999987766533333232232334665421                       


Q ss_pred             ------------------------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccC
Q 046820          235 ------------------------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVS  272 (350)
Q Consensus       235 ------------------------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S  272 (350)
                                                                =.||++|++|.-.+--=+.|+....-||-+=..+..+-
T Consensus       481 D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga  560 (791)
T KOG1222|consen  481 DLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA  560 (791)
T ss_pred             chHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc
Confidence                                                      06778888887766566667666666776655554332


Q ss_pred             hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh
Q 046820          273 ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV  316 (350)
Q Consensus       273 ~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~  316 (350)
                       ...+.-..+...+.....  +..+......+|++..|..+||+
T Consensus       561 -~eddLvL~~vi~~GT~a~--d~~cA~Lla~a~~i~tlieLL~a  601 (791)
T KOG1222|consen  561 -DEDDLVLQIVIACGTMAR--DLDCARLLAPAKLIDTLIELLQA  601 (791)
T ss_pred             -cchhhhhHHHHHhhhhhh--hhHHHHHhCccccHHHHHHHHHh
Confidence             222333333333333222  24566666688999999999975

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.002  Score=67.94  Aligned_cols=244  Identities=13%  Similarity=0.184  Sum_probs=170.2

Q ss_pred             cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820           61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI  140 (350)
Q Consensus        61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~  140 (350)
                      ...|..|+.++.++.   =.+++..|++.|+.+++..   |..+. +-+.++|+..|..   +  .-+++...-++.+++
T Consensus        21 aETI~kLcDRvessT---L~eDRR~A~rgLKa~srkY---R~~Vg-a~Gmk~li~vL~~---D--~~D~E~ik~~LdTl~   88 (970)
T KOG0946|consen   21 AETIEKLCDRVESST---LLEDRRDAVRGLKAFSRKY---REEVG-AQGMKPLIQVLQR---D--YMDPEIIKYALDTLL   88 (970)
T ss_pred             HhHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHH---HHHHH-HcccHHHHHHHhh---c--cCCHHHHHHHHHHHH
Confidence            456888888887753   2578999999999999864   54444 4347888898862   2  125778888888888


Q ss_pred             hhCCCCh------hhH-----------hhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhH
Q 046820          141 LLFPLEG------EAL-----------THLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGA  203 (350)
Q Consensus       141 ~~Ls~~~------e~k-----------~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~  203 (350)
                      -+++-+|      +.+           ..|...+.|.+++..+..-+...|..|+.+|.+|.+.-+ .+.+..|-..|-.
T Consensus        89 il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~-~e~q~~ll~~P~g  167 (970)
T KOG0946|consen   89 ILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP-TELQDALLVSPMG  167 (970)
T ss_pred             HHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC-HHHHHHHHHCchh
Confidence            3334332      112           144578899999999999999999999999999987654 4555555466889


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHhhhh--------------------------------HHHHHHHHHHHhCCHhhH
Q 046820          204 IEALFKLIEEPISPTATKAALVVIYHTIAS--------------------------------SASALSVLDGICSTDCGR  251 (350)
Q Consensus       204 i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~--------------------------------~e~aL~vL~~L~~~~eGr  251 (350)
                      |..|+.+|+|...| -..+|+-.|..|+-.                                .+.||.+|-+|....-..
T Consensus       168 IS~lmdlL~DsrE~-IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN  246 (970)
T KOG0946|consen  168 ISKLMDLLRDSREP-IRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN  246 (970)
T ss_pred             HHHHHHHHhhhhhh-hchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch
Confidence            99999999986433 445566666666421                                169999999999988888


Q ss_pred             HHhhcCCCChHHHHHHHhc---c-------Chh---HHHHHHHHHHHHccccccc--hHHHHHHHHhhchHHHHHHHHHh
Q 046820          252 ENANDKPLTMPVVVKKILR---V-------SEL---ATELSVSILWKLCMNEKRE--EKTAFVEALQVGAFQKLLVLLQV  316 (350)
Q Consensus       252 ~ai~~~~~~v~~lv~~l~~---~-------S~~---~~E~Av~iL~~Lc~~~~~~--~~~~~~~~~~~G~v~~LL~llq~  316 (350)
                      ..+..+.+-||.+.+++-.   +       ++.   +--.|.-++..+..-+-+.  ...+...+.+.+.+..|+.++-.
T Consensus       247 Q~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~  326 (970)
T KOG0946|consen  247 QNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMH  326 (970)
T ss_pred             hhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcC
Confidence            8888899999999987632   1       221   1223444444444432211  12344566688999999988876


Q ss_pred             cC
Q 046820          317 GC  318 (350)
Q Consensus       317 ~~  318 (350)
                      .|
T Consensus       327 ~~  328 (970)
T KOG0946|consen  327 PG  328 (970)
T ss_pred             CC
Confidence            65

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=97.70  E-value=0.0092  Score=61.62  Aligned_cols=227  Identities=14%  Similarity=0.121  Sum_probs=155.3

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +..+++.+...      +.+.+++.++..-....+.     .+...-+.+...|.   ..    +.+..+.+..+|-..|
T Consensus         5 ~~~~l~~l~~~------~~~~~~L~~l~~~~~~~~~-----l~~~~~~~lf~~L~---~~----~~e~v~~~~~iL~~~l   66 (503)
T PF10508_consen    5 INELLEELSSK------AERLEALPELKTELSSSPF-----LERLPEPVLFDCLN---TS----NREQVELICDILKRLL   66 (503)
T ss_pred             HHHHHHHHhcc------cchHHHHHHHHHHHhhhhH-----HHhchHHHHHHHHh---hc----ChHHHHHHHHHHHHHH
Confidence            45566666653      4577888888765443331     11222233666665   22    2344455555555333


Q ss_pred             CCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHH
Q 046820          144 PLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAA  223 (350)
Q Consensus       144 s~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~A  223 (350)
                      .-.+ -...  .++..+.+...|.+.+...|..++..|..+....  ......+.. .++++.++..++++. ..     
T Consensus        67 ~~~~-~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~--~~~~~~~~~-~~l~~~i~~~L~~~d-~~-----  134 (503)
T PF10508_consen   67 SALS-PDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS--EGAAQLLVD-NELLPLIIQCLRDPD-LS-----  134 (503)
T ss_pred             hccC-HHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC--HHHHHHhcC-ccHHHHHHHHHcCCc-HH-----
Confidence            3111 1111  3457788888999999999999999999988654  244555644 899999999998773 22     


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHh
Q 046820          224 LVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQ  303 (350)
Q Consensus       224 l~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~  303 (350)
                               ..+.|..+|..|+.+++|-+.+. ++..+..+...+...++..+=.+..++..+++.+    ++.......
T Consensus       135 ---------Va~~A~~~L~~l~~~~~~~~~l~-~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S----~~~~~~~~~  200 (503)
T PF10508_consen  135 ---------VAKAAIKALKKLASHPEGLEQLF-DSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS----PEAAEAVVN  200 (503)
T ss_pred             ---------HHHHHHHHHHHHhCCchhHHHHh-CcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC----HHHHHHHHh
Confidence                     23577888888888888998886 5555888888777767777777888999999876    346666678


Q ss_pred             hchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          304 VGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       304 ~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      .|.+++++..+..+ -.-.|-.|-++|.-|..
T Consensus       201 sgll~~ll~eL~~d-DiLvqlnalell~~La~  231 (503)
T PF10508_consen  201 SGLLDLLLKELDSD-DILVQLNALELLSELAE  231 (503)
T ss_pred             ccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHc
Confidence            89999999888764 45688898888888766

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=1.3e-05  Score=73.91  Aligned_cols=36  Identities=33%  Similarity=0.515  Sum_probs=30.7

Q ss_pred             hhhhcCCcccccc-ccccccCCcccCCCCCCcccCCccc
Q 046820           13 HARKEQPARKETG-ASLIEKDPVTTTPRNGITYDRVNIL   50 (350)
Q Consensus        13 ~~~~~~~~~~~~~-~~eiM~DPVtl~~~TG~TYDR~sIe   50 (350)
                      .+-+|+|+..--. ..+||+|||+.+  +||||||..|+
T Consensus       203 rk~rEvpd~lcgkIt~el~~~pvi~p--sgIty~ra~I~  239 (284)
T KOG4642|consen  203 RKKREVPDYLCGKITLELMREPVITP--SGITYDRADIE  239 (284)
T ss_pred             hccccccchhhhhhhHHhhcCCccCc--cccchhHHHHH
Confidence            3567999987544 459999999999  99999999988

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.55  E-value=0.0079  Score=58.13  Aligned_cols=222  Identities=14%  Similarity=0.157  Sum_probs=131.4

Q ss_pred             HHHHHHHHhcCccccchhhcc---CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcc------cCC
Q 046820           87 VAKIKEWAKESESNKSCIVDN---AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLG------SAS  157 (350)
Q Consensus        87 l~~L~~Lak~s~~nR~~i~~a---Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~------~~~  157 (350)
                      +..|+.+-+.+..+|.-+.+.   +.+..++.+|.... .    +.++...++..+.-+++.+++....+.      ...
T Consensus        31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~-~----~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~  105 (312)
T PF03224_consen   31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLS-S----NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSD  105 (312)
T ss_dssp             HHHHHHHHHHHH-------------------HHHHHH--------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH-
T ss_pred             HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHcc-C----cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccch
Confidence            344455555445555444443   46788888887431 1    356778888877755554443333221      123


Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820          158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA  237 (350)
Q Consensus       158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a  237 (350)
                      ....+..+|.+++......|+.+|-.|....+  ......  ..++++.+++.+++..+...           +....-+
T Consensus       106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~--~~~~~~--~~~~l~~ll~~L~~~l~~~~-----------~~~~~~a  170 (312)
T PF03224_consen  106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGP--KRSEKL--VKEALPKLLQWLSSQLSSSD-----------SELQYIA  170 (312)
T ss_dssp             -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTT--T--HHH--HHHHHHHHHHHHH-TT-HHH-----------H---HHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC--ccccch--HHHHHHHHHHHHHHhhcCCC-----------cchHHHH
Confidence            68888889999999999999999999986643  111111  14788889998886422100           0011578


Q ss_pred             HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHh-----cc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHH
Q 046820          238 LSVLDGICSTDCGRENANDKPLTMPVVVKKIL-----RV--SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKL  310 (350)
Q Consensus       238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~-----~~--S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~L  310 (350)
                      +..|..|...++-|..+. +.++++.++..+.     ..  ..+-.-++.-++|.|.-.     ++...++.+.+.|+.|
T Consensus       171 v~~L~~LL~~~~~R~~f~-~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-----~~~~~~~~~~~~i~~L  244 (312)
T PF03224_consen  171 VQCLQNLLRSKEYRQVFW-KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE-----PEIAEELNKKYLIPLL  244 (312)
T ss_dssp             HHHHHHHHTSHHHHHHHH-THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS-----HHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHhCcchhHHHHH-hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC-----HHHHHHHhccchHHHH
Confidence            888999999999999997 5899999999772     22  236688999999999874     4588889999999999


Q ss_pred             HHHHHhcCchHHHHHHHHHHHHHH
Q 046820          311 LVLLQVGCAERTKEKASEVLKLMN  334 (350)
Q Consensus       311 L~llq~~~t~~ak~kA~~LLk~l~  334 (350)
                      +.+++..--++.-|-+-..|+.|-
T Consensus       245 ~~i~~~~~KEKvvRv~la~l~Nl~  268 (312)
T PF03224_consen  245 ADILKDSIKEKVVRVSLAILRNLL  268 (312)
T ss_dssp             HHHHHH--SHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcccchHHHHHHHHHHHHH
Confidence            988886533444455444444443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.00087  Score=67.42  Aligned_cols=197  Identities=18%  Similarity=0.223  Sum_probs=134.5

Q ss_pred             hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820           63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL  142 (350)
Q Consensus        63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~  142 (350)
                      ++..+-++++..... .+..-..|+.-|-++|.+ .+.---|..-..|..||..|..  .     +.+..-..+..|. -
T Consensus       261 e~dr~~kklk~~~~K-QeqLLrva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr--~-----n~~Ll~lv~~FLk-K  330 (791)
T KOG1222|consen  261 EIDRLNKKLKTAIRK-QEQLLRVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDR--S-----NSSLLTLVIKFLK-K  330 (791)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcc--c-----chHHHHHHHHHHH-H
Confidence            455555555543210 011223466666777744 2333346666788899999962  1     2556666777777 7


Q ss_pred             CCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHH
Q 046820          143 FPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKA  222 (350)
Q Consensus       143 Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~  222 (350)
                      ||+.+|||..+...+.++.|+++....+++-+.-...+|++||-+.   .++..+-. .|.+|.|+.+|.+....   ..
T Consensus       331 LSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~---glr~KMv~-~GllP~l~~ll~~d~~~---~i  403 (791)
T KOG1222|consen  331 LSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS---GLRPKMVN-GGLLPHLASLLDSDTKH---GI  403 (791)
T ss_pred             hhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc---cccHHHhh-ccchHHHHHHhCCcccc---hh
Confidence            9999999999999999999999999999999999999999999664   45554435 79999999999876332   24


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHH-HHHccccc
Q 046820          223 ALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSIL-WKLCMNEK  291 (350)
Q Consensus       223 Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL-~~Lc~~~~  291 (350)
                      |+..||+++              - .+--.++..-..||+.+.+.++.++...-..++-.| .++|-+.+
T Consensus       404 A~~~lYh~S--------------~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR  458 (791)
T KOG1222|consen  404 ALNMLYHLS--------------C-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR  458 (791)
T ss_pred             hhhhhhhhc--------------c-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence            556666664              2 333445556778999999999988765444444333 56776554

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.0031  Score=66.68  Aligned_cols=151  Identities=15%  Similarity=0.187  Sum_probs=121.4

Q ss_pred             CcHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc-CCCChHHHHHHHHHHHHhhhhH
Q 046820          157 SSMGCMIWFLNSGD-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE-EPISPTATKAALVVIYHTIASS  234 (350)
Q Consensus       157 ~~l~~Lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~-~~~~~~a~k~Al~aL~~L~~~~  234 (350)
                      ..|+.|+.=+.+.+ ++-|.+|+..|+.+|     ..|++.+|.  -.+++|++.|. |..++..++.++.+++++..+.
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~s-----rkYR~~Vga--~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d   94 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFS-----RKYREEVGA--QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD   94 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHH-----HHHHHHHHH--cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence            35667777676664 788999999999998     379999976  45689999987 4468899999999999996431


Q ss_pred             ---------------------------------------------HHHHHHHHHHhCC--HhhHHHhhcCCCChHHHHHH
Q 046820          235 ---------------------------------------------ASALSVLDGICST--DCGRENANDKPLTMPVVVKK  267 (350)
Q Consensus       235 ---------------------------------------------e~aL~vL~~L~~~--~eGr~ai~~~~~~v~~lv~~  267 (350)
                                                                   ..+..+|..|.+|  .|-+.++..+|.+|..+|..
T Consensus        95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl  174 (970)
T KOG0946|consen   95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL  174 (970)
T ss_pred             cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence                                                         2788899998776  68888999999999999998


Q ss_pred             HhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcC
Q 046820          268 ILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGC  318 (350)
Q Consensus       268 l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~  318 (350)
                      |...-..-+-.|+-.|..|.+.++    .+....+=+++|..|+.++.-.|
T Consensus       175 L~DsrE~IRNe~iLlL~eL~k~n~----~IQKlVAFENaFerLfsIIeeEG  221 (970)
T KOG0946|consen  175 LRDSREPIRNEAILLLSELVKDNS----SIQKLVAFENAFERLFSIIEEEG  221 (970)
T ss_pred             HhhhhhhhchhHHHHHHHHHccCc----hHHHHHHHHHHHHHHHHHHHhcC
Confidence            877666667778888888988654    46666668899999999997544

>PF05536 Neurochondrin: Neurochondrin

Probab=97.45  E-value=0.005  Score=64.17  Aligned_cols=167  Identities=15%  Similarity=0.153  Sum_probs=107.7

Q ss_pred             HhhcccCCcHHHHHHHHccC-------CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHH
Q 046820          150 LTHLGSASSMGCMIWFLNSG-------DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKA  222 (350)
Q Consensus       150 k~~i~~~~~l~~Lv~~L~~g-------s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~  222 (350)
                      ++.|-+.=..+++-++|++|       ...-+.-|+.+|..++..   ++....= .--+-||.|++++.++.+...   
T Consensus        43 ~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~---~~~a~~~-~~~~~IP~Lle~l~~~s~~~~---  115 (543)
T PF05536_consen   43 RRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD---PELASSP-QMVSRIPLLLEILSSSSDLET---  115 (543)
T ss_pred             HHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC---hhhhcCH-HHHHHHHHHHHHHHcCCchhH---
Confidence            33444544578888999985       245566788888888764   2332110 125789999999987643222   


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHH
Q 046820          223 ALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEAL  302 (350)
Q Consensus       223 Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~  302 (350)
                                 .+.|+.+|..++++++|+.++. +.|+|+.+++.+.. .+...|.|..+|.+++...+.   ....  -
T Consensus       116 -----------v~dalqcL~~Ias~~~G~~aLl-~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~---~~~~--~  177 (543)
T PF05536_consen  116 -----------VDDALQCLLAIASSPEGAKALL-ESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQ---KSWA--E  177 (543)
T ss_pred             -----------HHHHHHHHHHHHcCcHhHHHHH-hcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcch---hhhh--h
Confidence                       3467777777788899999997 67999999998877 777899999999999986531   1111  1


Q ss_pred             hhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCCCC
Q 046820          303 QVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRLE  341 (350)
Q Consensus       303 ~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~~~  341 (350)
                      ..-.+..++.-++..-+......+-+++.+|..+-...|
T Consensus       178 ~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~  216 (543)
T PF05536_consen  178 DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSP  216 (543)
T ss_pred             hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCC
Confidence            111222333333333223334446667888877665444

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.089  Score=51.27  Aligned_cols=253  Identities=14%  Similarity=0.139  Sum_probs=151.5

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +.+.+.+|+.+.. +-.++.-+-+..+..-+|.+-..|-.-.++|+.+.+..++.. ..+   .+..++-.++.+|. .+
T Consensus        61 i~~~~~~i~e~i~-~~~~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~l-a~~---~~~~~l~ksL~al~-~l  134 (461)
T KOG4199|consen   61 INETVDKIKEHIG-QKLEETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLEL-AES---PNESVLKKSLEAIN-SL  134 (461)
T ss_pred             HHHhHHHHHHHHH-hhhHHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHH-hhC---CchhHHHHHHHHHH-Hh
Confidence            6666666665432 112233333333433333333344444567999999998873 222   24567888888887 23


Q ss_pred             CCChhhHhhcccCCcHHHHHHHHccCC--HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820          144 PLEGEALTHLGSASSMGCMIWFLNSGD--LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK  221 (350)
Q Consensus       144 s~~~e~k~~i~~~~~l~~Lv~~L~~gs--~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k  221 (350)
                      -   +...-+-+..++..++.+|....  .+.--.....+..-...+  +.++..+-+ .++.+.+.+.|......+.++
T Consensus       135 t---~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h--E~nrQ~~m~-~~il~Li~~~l~~~gk~~~VR  208 (461)
T KOG4199|consen  135 T---HKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH--EVNRQLFME-LKILELILQVLNREGKTRTVR  208 (461)
T ss_pred             h---cCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh--HHHHHHHHH-hhHHHHHHHHHcccCccHHHH
Confidence            2   22233445568888899887642  222112222222222222  467777656 788888886665433446777


Q ss_pred             HHHHHHHHhhhhH--------------------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHH
Q 046820          222 AALVVIYHTIASS--------------------------------------ASALSVLDGICSTDCGRENANDKPLTMPV  263 (350)
Q Consensus       222 ~Al~aL~~L~~~~--------------------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~  263 (350)
                      ..-.++..|....                                      -.....|..|+--.|-..+|. +.||+..
T Consensus       209 el~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~-e~GGl~t  287 (461)
T KOG4199|consen  209 ELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIA-ESGGLDT  287 (461)
T ss_pred             HHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHH-HccCHHH
Confidence            7777776664210                                      156677888888888888995 8999999


Q ss_pred             HHHHHhcc-ChhHHHH---HHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh-cCchHHHHHHHHHHHHHH
Q 046820          264 VVKKILRV-SELATEL---SVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV-GCAERTKEKASEVLKLMN  334 (350)
Q Consensus       264 lv~~l~~~-S~~~~E~---Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~-~~t~~ak~kA~~LLk~l~  334 (350)
                      |++.|... .+..++.   +.+.|..|..+     +++....++.|+.+++..++.. ..+|..-+.+...+-.+.
T Consensus       288 l~~~i~d~n~~~~r~l~k~~lslLralAG~-----DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~  358 (461)
T KOG4199|consen  288 LLRCIDDSNEQGNRTLAKTCLSLLRALAGS-----DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILC  358 (461)
T ss_pred             HHHHHhhhchhhHHHHHHHHHHHHHHHhCC-----CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            99999774 3444444   45555555543     4688899999999998877732 235666666555555554

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.016  Score=56.53  Aligned_cols=187  Identities=13%  Similarity=0.151  Sum_probs=127.7

Q ss_pred             CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCC
Q 046820           78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSAS  157 (350)
Q Consensus        78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~  157 (350)
                      .|.+++..|+..|..++.. -.|-.-|...|+..+|+.+|.   ++    +..+++.|..++-...+.++..+..+.+.+
T Consensus        95 ~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~---~~----~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~  166 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLE---NS----DAELRELAARVIGTAVQNNPKSQEQVIELG  166 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhc---CC----cHHHHHHHHHHHHHHHhcCHHHHHHHHHcc
Confidence            5788999999999999965 467777888888888888886   33    477899999998865555556666777888


Q ss_pred             cHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC-CChHHHHHHHHHHHHhhhhHH
Q 046820          158 SMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP-ISPTATKAALVVIYHTIASSA  235 (350)
Q Consensus       158 ~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~-~~~~a~k~Al~aL~~L~~~~e  235 (350)
                      +++.|...|.+. +..+|.+|..++.+|-.... +....-. ..+| ...|.+++.++ .+.+.+.-++..+-.|...  
T Consensus       167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~-~g~~~fl-~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~--  241 (342)
T KOG2160|consen  167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNK-PGQDEFL-KLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQE--  241 (342)
T ss_pred             cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCc-HHHHHHH-hcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHh--
Confidence            999999999876 67888999999999976542 2222223 3345 78899999875 4666666555555444321  


Q ss_pred             HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccc
Q 046820          236 SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMN  289 (350)
Q Consensus       236 ~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~  289 (350)
                                  .---..+...-+....++..+........|+|+..++.+-..
T Consensus       242 ------------~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  242 ------------DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             ------------hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence                        111111332333333444444455677889999888776553

>PRK09687 putative lyase; Provisional

Probab=97.33  E-value=0.04  Score=52.66  Aligned_cols=180  Identities=14%  Similarity=0.073  Sum_probs=102.5

Q ss_pred             chHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Q 046820          109 AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSD  188 (350)
Q Consensus       109 ai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~  188 (350)
                      ++|.|..++.  .+    .+..++..|+.+|- .+.....    .-.+.+++.+...+...+...|..|+..|-.     
T Consensus        91 a~~~L~~l~~--~D----~d~~VR~~A~~aLG-~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~-----  154 (280)
T PRK09687         91 VFNILNNLAL--ED----KSACVRASAINATG-HRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSV-----  154 (280)
T ss_pred             HHHHHHHHHh--cC----CCHHHHHHHHHHHh-ccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhc-----
Confidence            5666776642  12    24678888888887 3421110    0112345556666666677777777776632     


Q ss_pred             CchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCC--HhhHHHh------hcCCCC
Q 046820          189 SDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICST--DCGRENA------NDKPLT  260 (350)
Q Consensus       189 ~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~--~eGr~ai------~~~~~~  260 (350)
                              ++. +.+++.|+.+|.++ ++.-...|..+|-++....+.+...|..+..-  ++-|.+.      ..+..+
T Consensus       155 --------~~~-~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~a  224 (280)
T PRK09687        155 --------IND-EAAIPLLINLLKDP-NGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRV  224 (280)
T ss_pred             --------cCC-HHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhH
Confidence                    223 56778888888766 55666777777777643223333333332221  1111110      135567


Q ss_pred             hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHH
Q 046820          261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLK  331 (350)
Q Consensus       261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk  331 (350)
                      ||.|++.+..+..  .-.|+.+|..+..               .-+++.|..+++....++.+.||.+-|+
T Consensus       225 v~~Li~~L~~~~~--~~~a~~ALg~ig~---------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        225 LSVLIKELKKGTV--GDLIIEAAGELGD---------------KTLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             HHHHHHHHcCCch--HHHHHHHHHhcCC---------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence            7888887765442  2345555544332               1257777777765557899999988765

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=97.00  E-value=0.11  Score=52.08  Aligned_cols=247  Identities=8%  Similarity=0.085  Sum_probs=137.0

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCC
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSAS  157 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~  157 (350)
                      |.+...+.-+.|.+.+.++.+||..+-+.|.-..++.+|+.+-.-+...+.+...-+-..|. |-.++. +.+.-+++.|
T Consensus       100 d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~-Ny~l~~~~l~aq~~~~g  178 (604)
T KOG4500|consen  100 DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH-NYILDSRELRAQVADAG  178 (604)
T ss_pred             cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHH-HhhCCcHHHHHHHHhcc
Confidence            55667788899999999999999999999998888898875421110122334444555666 666665 5566777899


Q ss_pred             cHHHHHHHHccC--CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh------------------
Q 046820          158 SMGCMIWFLNSG--DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP------------------  217 (350)
Q Consensus       158 ~l~~Lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~------------------  217 (350)
                      .++.++..+.-|  +.+.-+....-.++|.+... +...+.- ....+...|++++.....+                  
T Consensus       179 Vl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~-e~~~~~~-~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~  256 (604)
T KOG4500|consen  179 VLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC-EMLYPFC-KDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL  256 (604)
T ss_pred             cHHHHHHHhhcccccHHHHHHHHhccccHHHHHH-Hhhhhhh-ccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc
Confidence            999998888765  33333333333344432211 1112222 1244555666666532211                  


Q ss_pred             ---HHHHHH-HHHHHHhhhh------HHHHHHHHHH-------HhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHH
Q 046820          218 ---TATKAA-LVVIYHTIAS------SASALSVLDG-------ICSTDCGRENANDKPLTMPVVVKKILRVSELATELSV  280 (350)
Q Consensus       218 ---~a~k~A-l~aL~~L~~~------~e~aL~vL~~-------L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av  280 (350)
                         +..+++ +..+++|...      .+.++..+..       |.+-+|.-..+...+-.+.-++.-+........--++
T Consensus       257 Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~  336 (604)
T KOG4500|consen  257 VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGS  336 (604)
T ss_pred             eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHH
Confidence               111222 3444444432      2344444433       3333444444533332233333333333333344455


Q ss_pred             HHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh----cCchHHHHHHHHHHHHH
Q 046820          281 SILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV----GCAERTKEKASEVLKLM  333 (350)
Q Consensus       281 ~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~----~~t~~ak~kA~~LLk~l  333 (350)
                      =++.+..+.     +.....+++.|.+.+|+.+|..    +|.-+.+.-+-.-||.|
T Consensus       337 LaigNfaR~-----D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl  388 (604)
T KOG4500|consen  337 LAIGNFARR-----DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNL  388 (604)
T ss_pred             HHHHhhhcc-----chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhc
Confidence            556666664     3467788999999999998853    44455555544444433

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.92  E-value=0.064  Score=51.79  Aligned_cols=211  Identities=15%  Similarity=0.175  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHHHHhcCccccchhhcc------CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcc
Q 046820           81 VGCKDLVAKIKEWAKESESNKSCIVDN------AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLG  154 (350)
Q Consensus        81 ~~~~~Al~~L~~Lak~s~~nR~~i~~a------Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~  154 (350)
                      +...-.+.-|-.+..+++.....+.+.      ....+++.++.   .+    +..+++.|..+|..++.-++...... 
T Consensus        72 d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~---~~----D~~i~~~a~~iLt~Ll~~~~~~~~~~-  143 (312)
T PF03224_consen   72 DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD---RN----DSFIQLKAAFILTSLLSQGPKRSEKL-  143 (312)
T ss_dssp             HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S----S----SHHHHHHHHHHHHHHHTSTTT--HHH-
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc---CC----CHHHHHHHHHHHHHHHHcCCccccch-
Confidence            344457777778888877655555542      13455555553   22    46678888888874444333211110 


Q ss_pred             cCCcHHHHHHHHccC----CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820          155 SASSMGCMIWFLNSG----DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHT  230 (350)
Q Consensus       155 ~~~~l~~Lv~~L~~g----s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L  230 (350)
                      ..+.++.++..|++-    +.+....|+..|.+|...   +.++..+-+ .+.++.|+.+++.. ...........+|++
T Consensus       144 ~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~---~~~R~~f~~-~~~v~~l~~iL~~~-~~~~~~~~~Ql~Y~~  218 (312)
T PF03224_consen  144 VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS---KEYRQVFWK-SNGVSPLFDILRKQ-ATNSNSSGIQLQYQA  218 (312)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS---HHHHHHHHT-HHHHHHHHHHHH----------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc---chhHHHHHh-cCcHHHHHHHHHhh-cccCCCCchhHHHHH
Confidence            034677777777763    334457889999999866   488888866 89999999999321 001112223344433


Q ss_pred             hhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHH
Q 046820          231 IASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV-SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQK  309 (350)
Q Consensus       231 ~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~-S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~  309 (350)
                             +-++=.|+-.++....+..+. .||.+++.+... .+...--++++|.|++....+   .....|+..|+.+ 
T Consensus       219 -------ll~lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~---~~~~~mv~~~~l~-  286 (312)
T PF03224_consen  219 -------LLCLWLLSFEPEIAEELNKKY-LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK---SNIELMVLCGLLK-  286 (312)
T ss_dssp             -------HHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST---THHHHHHHH-HHH-
T ss_pred             -------HHHHHHHhcCHHHHHHHhccc-hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH---HHHHHHHHccHHH-
Confidence                   234445566677888886544 899999988664 467788899999999987642   3788888887666 


Q ss_pred             HHHHHHh
Q 046820          310 LLVLLQV  316 (350)
Q Consensus       310 LL~llq~  316 (350)
                      ++..|+.
T Consensus       287 ~l~~L~~  293 (312)
T PF03224_consen  287 TLQNLSE  293 (312)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhc
Confidence            5666653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>smart00504 Ubox Modified RING finger domain

Probab=96.91  E-value=0.00021  Score=52.19  Aligned_cols=25  Identities=36%  Similarity=0.430  Sum_probs=22.5

Q ss_pred             ccccccccCCcccCCCCCCcccCCccc
Q 046820           24 TGASLIEKDPVTTTPRNGITYDRVNIL   50 (350)
Q Consensus        24 ~~~~eiM~DPVtl~~~TG~TYDR~sIe   50 (350)
                      -..+++|+|||+++  +|++|+|++|+
T Consensus         5 pi~~~~~~~Pv~~~--~G~v~~~~~i~   29 (63)
T smart00504        5 PISLEVMKDPVILP--SGQTYERRAIE   29 (63)
T ss_pred             cCCCCcCCCCEECC--CCCEEeHHHHH
Confidence            34679999999999  99999999987

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=96.79  E-value=0.0023  Score=42.71  Aligned_cols=39  Identities=21%  Similarity=0.190  Sum_probs=36.5

Q ss_pred             hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 046820          147 GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELV  185 (350)
Q Consensus       147 ~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls  185 (350)
                      ++++..|.+.|+++.|+.+|++++.+.+.+|+.+|.+|+
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            578888889999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=96.75  E-value=0.00082  Score=44.91  Aligned_cols=39  Identities=26%  Similarity=0.272  Sum_probs=33.5

Q ss_pred             CccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           97 SESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        97 s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +++|+..|.+.|++|.|+.+|.   ++    +.+++++|+.+|. ||
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~---~~----~~~v~~~a~~al~-nl   39 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLK---SP----DPEVQEEAAWALG-NL   39 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTT---SS----SHHHHHHHHHHHH-HH
T ss_pred             CHHHHHHHHHcccHHHHHHHHc---CC----CHHHHHHHHHHHH-HH
Confidence            4688999999999999999997   32    4789999999998 65

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PRK09687 putative lyase; Provisional

Probab=96.74  E-value=0.14  Score=48.97  Aligned_cols=152  Identities=13%  Similarity=0.031  Sum_probs=98.3

Q ss_pred             chHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Q 046820          109 AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSD  188 (350)
Q Consensus       109 ai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~  188 (350)
                      -++.|..+|.   +.    +..++..|+..|. .+.          ....++.+..++++.+...|..|+.+|-.|....
T Consensus        24 ~~~~L~~~L~---d~----d~~vR~~A~~aL~-~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~   85 (280)
T PRK09687         24 NDDELFRLLD---DH----NSLKRISSIRVLQ-LRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAK   85 (280)
T ss_pred             cHHHHHHHHh---CC----CHHHHHHHHHHHH-hcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Confidence            4678888885   22    4678888888887 332          3457888889899999999999999999885321


Q ss_pred             CchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh----HHHHHHHHHHHhCC--HhhHHHhh------c
Q 046820          189 SDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS----SASALSVLDGICST--DCGRENAN------D  256 (350)
Q Consensus       189 ~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~----~e~aL~vL~~L~~~--~eGr~ai~------~  256 (350)
                         ..      ...+++.|..++.+..++.-...|..+|.+++..    ...++..|..+...  .+-|....      .
T Consensus        86 ---~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~  156 (280)
T PRK09687         86 ---RC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN  156 (280)
T ss_pred             ---cc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC
Confidence               10      1467788888855444677777889999888632    22333333222211  11111111      2


Q ss_pred             CCCChHHHHHHHhccChhHHHHHHHHHHHHc
Q 046820          257 KPLTMPVVVKKILRVSELATELSVSILWKLC  287 (350)
Q Consensus       257 ~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc  287 (350)
                      ...+|+.|+..+...++..+..|+..|..++
T Consensus       157 ~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~  187 (280)
T PRK09687        157 DEAAIPLLINLLKDPNGDVRNWAAFALNSNK  187 (280)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence            4556888888887766667777777777663

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.17  Score=49.38  Aligned_cols=175  Identities=19%  Similarity=0.165  Sum_probs=116.0

Q ss_pred             chHHHHHHHHHHHhhCCCCh-hhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHH
Q 046820          128 NVSVLEEILSTLILLFPLEG-EALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEA  206 (350)
Q Consensus       128 ~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~  206 (350)
                      +.+-.+.|+.-|.. +- .+ +|-.-+..-|.+..++..|++++.+.|..|+.+|-+.+...  +...+.+-+ .|+.+.
T Consensus        96 ~le~ke~ald~Le~-lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNN--P~~Qe~v~E-~~~L~~  170 (342)
T KOG2160|consen   96 DLEDKEDALDNLEE-LV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNN--PKSQEQVIE-LGALSK  170 (342)
T ss_pred             CHHHHHHHHHHHHH-HH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC--HHHHHHHHH-cccHHH
Confidence            34455666666552 21 11 34344456678888888999999999999999999999876  466666545 789999


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhc--cChhHHHHHHHHHH
Q 046820          207 LFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILR--VSELATELSVSILW  284 (350)
Q Consensus       207 LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~--~S~~~~E~Av~iL~  284 (350)
                      |+.++....+-..+..|+-|+++|..++             +-|-..+. ...+..+|.+.|-+  .+.+.+-.|+..+.
T Consensus       171 Ll~~ls~~~~~~~r~kaL~AissLIRn~-------------~~g~~~fl-~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~  236 (342)
T KOG2160|consen  171 LLKILSSDDPNTVRTKALFAISSLIRNN-------------KPGQDEFL-KLNGYQVLRDVLQSNNTSVKLKRKALFLLS  236 (342)
T ss_pred             HHHHHccCCCchHHHHHHHHHHHHHhcC-------------cHHHHHHH-hcCCHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            9999986655566677777777776544             34667776 44558888888877  46678888888888


Q ss_pred             HHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHH
Q 046820          285 KLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKA  326 (350)
Q Consensus       285 ~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA  326 (350)
                      .|-.....    ... .+..-.|+..+..+.+......++.|
T Consensus       237 ~Ll~~~~s----~~d-~~~~~~f~~~~~~l~~~l~~~~~e~~  273 (342)
T KOG2160|consen  237 LLLQEDKS----DED-IASSLGFQRVLENLISSLDFEVNEAA  273 (342)
T ss_pred             HHHHhhhh----hhh-HHHHhhhhHHHHHHhhccchhhhHHH
Confidence            87774432    222 33333344455555443333334433

>PF05536 Neurochondrin: Neurochondrin

Probab=96.70  E-value=0.025  Score=59.03  Aligned_cols=160  Identities=19%  Similarity=0.231  Sum_probs=113.1

Q ss_pred             CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCc-hhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH
Q 046820          156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSD-QRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS  234 (350)
Q Consensus       156 ~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~-~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~  234 (350)
                      +..++..+.+|++.+.+.|.-+..++.++....+. ...+..|-+.-| +..|-+||+.+..|...        +--...
T Consensus         4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~--------~~~~~~   74 (543)
T PF05536_consen    4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDC--------PPEEYL   74 (543)
T ss_pred             hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCC--------CHHHHH
Confidence            34677888899998989999999999999765431 122323433334 47777888875332111        111123


Q ss_pred             HHHHHHHHHHhCCHhhHHHhhcCC---CChHHHHHHHhccCh-hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHH
Q 046820          235 ASALSVLDGICSTDCGRENANDKP---LTMPVVVKKILRVSE-LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKL  310 (350)
Q Consensus       235 e~aL~vL~~L~~~~eGr~ai~~~~---~~v~~lv~~l~~~S~-~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~L  310 (350)
                      ..|+++|..+|+-++-.    .|+   +.||.+++.+...+. ...+.|..+|..++.+.     +-.+..++.|+++.|
T Consensus        75 ~LavsvL~~f~~~~~~a----~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-----~G~~aLl~~g~v~~L  145 (543)
T PF05536_consen   75 SLAVSVLAAFCRDPELA----SSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-----EGAKALLESGAVPAL  145 (543)
T ss_pred             HHHHHHHHHHcCChhhh----cCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-----HhHHHHHhcCCHHHH
Confidence            57888888888855332    233   468999999999887 88999999999999542     355666799999999


Q ss_pred             HHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          311 LVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       311 L~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      +..+..  .+..++.|..+|-.+-.
T Consensus       146 ~ei~~~--~~~~~E~Al~lL~~Lls  168 (543)
T PF05536_consen  146 CEIIPN--QSFQMEIALNLLLNLLS  168 (543)
T ss_pred             HHHHHh--CcchHHHHHHHHHHHHH
Confidence            998886  46788998888877654

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=96.67  E-value=0.21  Score=50.20  Aligned_cols=201  Identities=14%  Similarity=0.019  Sum_probs=132.3

Q ss_pred             HHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC
Q 046820           65 LEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP  144 (350)
Q Consensus        65 ~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls  144 (350)
                      .+++.++.+    .|...+.-+.-.|.++++.+ .+...+++.|++.-|+++|..-+.-  +.+.+.|-.++++|. ||.
T Consensus       318 ~~~~sw~~S----~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~v--dgnV~~qhA~lsALR-nl~  389 (604)
T KOG4500|consen  318 DFLESWFRS----DDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDV--DGNVERQHACLSALR-NLM  389 (604)
T ss_pred             HHHHHHhcC----CchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCC--CccchhHHHHHHHHH-hcc
Confidence            344444444    34455666666899999874 7778899999999999999621111  456788899999999 999


Q ss_pred             CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchh-HHhhhhchhhHHHHHHHHhcCCCChHHHHHH
Q 046820          145 LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQR-KVNVLSENEGAIEALFKLIEEPISPTATKAA  223 (350)
Q Consensus       145 ~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~-~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~A  223 (350)
                      ++.-||..+...|..+.+...|+..++.....-..+|.-+--.   ++ ....+|..+..|+-||+--+++...--.-.+
T Consensus       390 IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~---qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gES  466 (604)
T KOG4500|consen  390 IPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDS---QEYIACELAKNPELFEKLVDWSKSPDFAGVAGES  466 (604)
T ss_pred             ccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhc---hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhh
Confidence            9999999998999999999999988665555445555544322   23 4556777789999999998876443223333


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820          224 LVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM  288 (350)
Q Consensus       224 l~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~  288 (350)
                      .+.|..|..+..           ...---.+ -..|+|...|.+...-.-..++-|+-+|..+..
T Consensus       467 nRll~~lIkHs~-----------~kdv~~tv-pksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~  519 (604)
T KOG4500|consen  467 NRLLLGLIKHSK-----------YKDVILTV-PKSGGIKEKVSMFTKNHINMQNEALVALLSTES  519 (604)
T ss_pred             hHHHHHHHHhhH-----------hhhhHhhc-cccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence            444444432110           00111122 255678888887766555556666666665544

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.061  Score=57.64  Aligned_cols=148  Identities=16%  Similarity=0.142  Sum_probs=104.2

Q ss_pred             cHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh---
Q 046820          158 SMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS---  233 (350)
Q Consensus       158 ~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~---  233 (350)
                      -+..|+.=|+.. +......|+.=|+++.... +++....+ -..-+||.||.||++..+...+..|.++|++||..   
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mg-nEesLs~f-pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~  245 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMG-NEESLSGF-PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR  245 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhc-chhhhccc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence            344444444443 4444555666666654332 13444444 34789999999999988899999999999999852   


Q ss_pred             --------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHc
Q 046820          234 --------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLC  287 (350)
Q Consensus       234 --------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc  287 (350)
                                                .|.+|.+|+.|+. .++++-+  .+|++.+++..+.=-|-.++-.|++|-.|.|
T Consensus       246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR-~H~~AiL--~AG~l~a~LsylDFFSi~aQR~AlaiaaN~C  322 (1051)
T KOG0168|consen  246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR-RHPKAIL--QAGALSAVLSYLDFFSIHAQRVALAIAANCC  322 (1051)
T ss_pred             hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh-hccHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                      1789999999998 4566544  7899999999887788889999999999999


Q ss_pred             cccccchHHHHHHHHhhchHHHHHHHHH
Q 046820          288 MNEKREEKTAFVEALQVGAFQKLLVLLQ  315 (350)
Q Consensus       288 ~~~~~~~~~~~~~~~~~G~v~~LL~llq  315 (350)
                      +.=.+++-..+-++     +|-|.-+||
T Consensus       323 ksi~sd~f~~v~ea-----lPlL~~lLs  345 (1051)
T KOG0168|consen  323 KSIRSDEFHFVMEA-----LPLLTPLLS  345 (1051)
T ss_pred             hcCCCccchHHHHH-----HHHHHHHHh
Confidence            97765433333333     454444454

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.089  Score=56.45  Aligned_cols=180  Identities=14%  Similarity=0.113  Sum_probs=118.9

Q ss_pred             chHHHHHHHHHHHhhCCCCh-hhHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHH
Q 046820          128 NVSVLEEILSTLILLFPLEG-EALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIE  205 (350)
Q Consensus       128 ~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~  205 (350)
                      ++..|-+|+.-|..+|++.. +....+.-...++.||.+|+.. ..+.-.+|+++|.+|..+-+  .....+=. +++||
T Consensus       181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP--~S~a~vV~-~~aIP  257 (1051)
T KOG0168|consen  181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP--RSSAIVVD-EHAIP  257 (1051)
T ss_pred             ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc--chhheeec-ccchH
Confidence            45567778888877787665 4444554556899999999987 78999999999999987653  44444424 78999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHhhhh-------------------------HHHHHHHHHHHhCC--HhhHHHhhcCC
Q 046820          206 ALFKLIEEPISPTATKAALVVIYHTIAS-------------------------SASALSVLDGICST--DCGRENANDKP  258 (350)
Q Consensus       206 ~LV~lL~~~~~~~a~k~Al~aL~~L~~~-------------------------~e~aL~vL~~L~~~--~eGr~ai~~~~  258 (350)
                      .|+.-|..=.+-..-.-+|.+|--++..                         -+.||++-.|.|..  .+--.-+   .
T Consensus       258 vl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v---~  334 (1051)
T KOG0168|consen  258 VLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV---M  334 (1051)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH---H
Confidence            9997665332344445556666655421                         15788888888874  2111112   2


Q ss_pred             CChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHH
Q 046820          259 LTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLL  314 (350)
Q Consensus       259 ~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~ll  314 (350)
                      .++|.|-.++..-..+.-|++...+..+...... .+...++..+.|.+...-.+|
T Consensus       335 ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h-~~~kLdql~s~dLi~~~~qLl  389 (1051)
T KOG0168|consen  335 EALPLLTPLLSYQDKKPIESVCICLTRIADGFQH-GPDKLDQLCSHDLITNIQQLL  389 (1051)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc-ChHHHHHHhchhHHHHHHHHH
Confidence            4567777766666778888888888887654432 245666666666555444443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.4  Score=52.88  Aligned_cols=136  Identities=15%  Similarity=0.130  Sum_probs=94.7

Q ss_pred             HHH-HHHHHHHHHhcCccccchhhc----cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCC
Q 046820           83 CKD-LVAKIKEWAKESESNKSCIVD----NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSAS  157 (350)
Q Consensus        83 ~~~-Al~~L~~Lak~s~~nR~~i~~----aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~  157 (350)
                      +.+ +|..|+++.+.++.--..+..    .|..+.+..+|.+-  .    +..++.-++.++. .+.-..+...-|++.+
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~--~----~~~iq~LaL~Vi~-~~Tan~~Cv~~~a~~~ 1813 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR--K----HPKLQILALQVIL-LATANKECVTDLATCN 1813 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc--C----CchHHHHHHHHHH-HHhcccHHHHHHHhhh
Confidence            443 888999999888743333222    37788888888732  2    3567888888887 4544446666777888


Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820          158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHT  230 (350)
Q Consensus       158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L  230 (350)
                      .+-.|..+|.+ -+..|+-+.-+|+.|++..  +..++.+ . +|++.-+..++-...+++-.-.|...|-.+
T Consensus      1814 vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~--~i~keA~-~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl 1881 (2235)
T KOG1789|consen 1814 VLTTLLTLLHS-QPSMRARVLDVLYALSSNG--QIGKEAL-E-HGGLMYILSILCLTNSDQQRAQAAELLAKL 1881 (2235)
T ss_pred             HHHHHHHHHhc-ChHHHHHHHHHHHHHhcCc--HHHHHHH-h-cCchhhhhHHHhccCcHHHHHHHHHHHHHh
Confidence            99999999987 4567888999999999874  4667666 4 677777777777665665555555544444

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=96.30  E-value=0.82  Score=50.65  Aligned_cols=78  Identities=21%  Similarity=0.070  Sum_probs=45.2

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCc
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASS  158 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~  158 (350)
                      |+..+..|+..|..+.           ..+++|.|+.+|.   ++    +..++..|+.+|.. +.  +       ....
T Consensus       634 d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~---D~----d~~VR~~Aa~aL~~-l~--~-------~~~~  685 (897)
T PRK13800        634 DPGVRRTAVAVLTETT-----------PPGFGPALVAALG---DG----AAAVRRAAAEGLRE-LV--E-------VLPP  685 (897)
T ss_pred             CHHHHHHHHHHHhhhc-----------chhHHHHHHHHHc---CC----CHHHHHHHHHHHHH-HH--h-------ccCc
Confidence            4555666666655542           2457888888885   32    46788888888762 31  0       0012


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHH
Q 046820          159 MGCMIWFLNSGDLSRRRNAVLLLTEL  184 (350)
Q Consensus       159 l~~Lv~~L~~gs~~~r~~Aa~lL~~L  184 (350)
                      .+.+...|.+.+...|..|+..|-.+
T Consensus       686 ~~~L~~~L~~~d~~VR~~A~~aL~~~  711 (897)
T PRK13800        686 APALRDHLGSPDPVVRAAALDVLRAL  711 (897)
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence            24455556666666666666555443

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=95.85  E-value=0.11  Score=44.55  Aligned_cols=111  Identities=16%  Similarity=0.179  Sum_probs=89.9

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +..||.+....   .+.+.+.+.+..|.++|-+ +.|-..+.+..+....+.-|.   ..    +....|-++..|. |+
T Consensus        18 lq~LV~efq~t---t~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~---e~----ne~LvefgIgglC-Nl   85 (173)
T KOG4646|consen   18 LQHLVDEFQTT---TNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLE---EQ----NELLVEFGIGGLC-NL   85 (173)
T ss_pred             HHHHHHHHHHh---ccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhh---cc----cHHHHHHhHHHHH-hh
Confidence            55667766554   4678888899999999976 789999999999999888885   33    4566788999999 99


Q ss_pred             CCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhc
Q 046820          144 PLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVS  186 (350)
Q Consensus       144 s~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~  186 (350)
                      -.+..|++.|.+.+.++.++.+|.+.....-.+|+..|..|+-
T Consensus        86 C~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~  128 (173)
T KOG4646|consen   86 CLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEF  128 (173)
T ss_pred             ccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcC
Confidence            8888999999999999999999988766666677777777763

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=95.62  E-value=0.098  Score=39.93  Aligned_cols=87  Identities=22%  Similarity=0.260  Sum_probs=63.1

Q ss_pred             hHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Q 046820          110 VSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDS  189 (350)
Q Consensus       110 i~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~  189 (350)
                      ||.|+..|..  +    .+..++..|+.+|. .+  .+        +.+++.|+.+|++.++..|..|+..|..+     
T Consensus         1 i~~L~~~l~~--~----~~~~vr~~a~~~L~-~~--~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-----   58 (88)
T PF13646_consen    1 IPALLQLLQN--D----PDPQVRAEAARALG-EL--GD--------PEAIPALIELLKDEDPMVRRAAARALGRI-----   58 (88)
T ss_dssp             HHHHHHHHHT--S----SSHHHHHHHHHHHH-CC--TH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC-----
T ss_pred             CHHHHHHHhc--C----CCHHHHHHHHHHHH-Hc--CC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh-----
Confidence            6888998841  2    25778899988888 23  22        24799999999988999999988887754     


Q ss_pred             chhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHH
Q 046820          190 DQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVI  227 (350)
Q Consensus       190 ~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL  227 (350)
                              |. +.+++.|.+++.++.+..-...|..+|
T Consensus        59 --------~~-~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   59 --------GD-PEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             --------HH-HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             --------CC-HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence                    34 678899999998875543345556554

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=95.50  E-value=1.2  Score=44.46  Aligned_cols=171  Identities=15%  Similarity=0.089  Sum_probs=113.8

Q ss_pred             HHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHcc
Q 046820           89 KIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNS  168 (350)
Q Consensus        89 ~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~  168 (350)
                      .|-.+-++.+.-|.-+.-.-+.+-+..++-  ++     +.++.-.++.++.+.+. +.+..+.+..-+.--.++..|..
T Consensus         6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL--~~-----~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~   77 (371)
T PF14664_consen    6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLL--SD-----SKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDR   77 (371)
T ss_pred             HHHHHHHhCchhhhhhhHHHHHHHHHHHHC--CC-----cHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcc
Confidence            445555666655555444444555554332  12     26788888899874333 44555555555555667777776


Q ss_pred             C--CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhC
Q 046820          169 G--DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICS  246 (350)
Q Consensus       169 g--s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~  246 (350)
                      .  ...+|++|..++..+.....   ....+ . .|++..+|.+..+. +.+-...++.+|..++..+            
T Consensus        78 ~~~~~~ER~QALkliR~~l~~~~---~~~~~-~-~~vvralvaiae~~-~D~lr~~cletL~El~l~~------------  139 (371)
T PF14664_consen   78 DNKNDVEREQALKLIRAFLEIKK---GPKEI-P-RGVVRALVAIAEHE-DDRLRRICLETLCELALLN------------  139 (371)
T ss_pred             cCCChHHHHHHHHHHHHHHHhcC---CcccC-C-HHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhC------------
Confidence            5  57899999999999986531   22235 3 79999999999875 4456666666666654321            


Q ss_pred             CHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcccc
Q 046820          247 TDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNE  290 (350)
Q Consensus       247 ~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~  290 (350)
                           -+++.+.||+.++++.+..++....|..+.+++.+-...
T Consensus       140 -----P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p  178 (371)
T PF14664_consen  140 -----PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP  178 (371)
T ss_pred             -----HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc
Confidence                 245568899999999998887678888888888887754

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=95.41  E-value=0.033  Score=36.25  Aligned_cols=38  Identities=21%  Similarity=0.229  Sum_probs=34.7

Q ss_pred             hhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 046820          148 EALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELV  185 (350)
Q Consensus       148 e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls  185 (350)
                      +++..+.+.|+++.|+.+|.+++.+.+.+|+.+|.+|+
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            56777788899999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=94.96  E-value=0.034  Score=36.23  Aligned_cols=39  Identities=18%  Similarity=0.302  Sum_probs=32.2

Q ss_pred             ccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC
Q 046820           98 ESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP  144 (350)
Q Consensus        98 ~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls  144 (350)
                      +.++..+.+.|++|.|+.+|.   .+    +.++++.++.+|. |++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~---~~----~~~i~~~a~~aL~-nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLK---SE----DEEVVKEAAWALS-NLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HHc
Confidence            348889999999999999996   22    3678999999998 764

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=94.90  E-value=0.17  Score=43.40  Aligned_cols=121  Identities=13%  Similarity=0.167  Sum_probs=90.6

Q ss_pred             chHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820          128 NVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEAL  207 (350)
Q Consensus       128 ~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L  207 (350)
                      +.+.+|..++-|. |+.-++-|=..+...++++..+..|...+-.-++.+..-|++|..+   ..+++.| ...+.+|..
T Consensus        30 ~~eakeqv~ANLA-NFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d---~~n~~~I-~ea~g~pli  104 (173)
T KOG4646|consen   30 NIEAKEQVTANLA-NFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD---KTNAKFI-REALGLPLI  104 (173)
T ss_pred             cHHHHHHHHHHHH-hhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC---hHHHHHH-HHhcCCceE
Confidence            5778899999998 9998887777887889999999999998888999999999999865   4677777 336777888


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccC
Q 046820          208 FKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVS  272 (350)
Q Consensus       208 V~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S  272 (350)
                      +..+.++ ....+..|+.+|+.|+..++             .-|.++.     -|++|+.|.+.+
T Consensus       105 i~~lssp-~e~tv~sa~~~l~~l~~~~R-------------t~r~ell-----~p~Vv~~v~r~~  150 (173)
T KOG4646|consen  105 IFVLSSP-PEITVHSAALFLQLLEFGER-------------TERDELL-----SPAVVRTVQRWR  150 (173)
T ss_pred             EeecCCC-hHHHHHHHHHHHHHhcCccc-------------chhHHhc-----cHHHHHHHHHHH
Confidence            8888765 23455666667777664321             1233343     478888887654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=94.66  E-value=0.22  Score=37.92  Aligned_cols=85  Identities=26%  Similarity=0.369  Sum_probs=57.1

Q ss_pred             HHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820          159 MGCMIWFL-NSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA  237 (350)
Q Consensus       159 l~~Lv~~L-~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a  237 (350)
                      |+.|+..| ++.+...|..|+.+|..+             +. +.+++.|+++++++ ++.-...|..+|..+-      
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------------~~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL-------------GD-PEAIPALIELLKDE-DPMVRRAAARALGRIG------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC-------------TH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc-------------CC-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC------
Confidence            57788888 667899999888887733             12 57789999999765 6665555555555441      


Q ss_pred             HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccC-hhHHHHHHHHH
Q 046820          238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVS-ELATELSVSIL  283 (350)
Q Consensus       238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S-~~~~E~Av~iL  283 (350)
                                         ...+++.+.+.+...+ ...++.|+..|
T Consensus        60 -------------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   60 -------------------DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             -------------------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             -------------------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence                               1235677777776643 34467777665

>PTZ00429 beta-adaptin; Provisional

Probab=94.32  E-value=9.7  Score=41.48  Aligned_cols=214  Identities=15%  Similarity=0.111  Sum_probs=125.6

Q ss_pred             chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820           62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL  141 (350)
Q Consensus        62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~  141 (350)
                      .++.++-..|.+.    +...+.++++++-..--.+...      .-+.+-++.++.   ..    +.+ +..-+...+.
T Consensus        32 ge~~ELr~~L~s~----~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~---S~----d~e-lKKLvYLYL~   93 (746)
T PTZ00429         32 GEGAELQNDLNGT----DSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAP---ST----DLE-LKKLVYLYVL   93 (746)
T ss_pred             chHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhC---CC----CHH-HHHHHHHHHH
Confidence            3566666666553    4567788888876554333110      113334444443   22    232 2333333221


Q ss_pred             hCCC-ChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHH
Q 046820          142 LFPL-EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTAT  220 (350)
Q Consensus       142 ~Ls~-~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~  220 (350)
                      +..- .+| ..++    +++.+.+-|.+.++-.|..|.++|.++-..    +   .+   +-+++.+.+.+.+. +|--.
T Consensus        94 ~ya~~~pe-lalL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~----~---i~---e~l~~~lkk~L~D~-~pYVR  157 (746)
T PTZ00429         94 STARLQPE-KALL----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS----S---VL---EYTLEPLRRAVADP-DPYVR  157 (746)
T ss_pred             HHcccChH-HHHH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH----H---HH---HHHHHHHHHHhcCC-CHHHH
Confidence            3321 112 1122    577788888888899999998888776421    2   22   45667777888766 77788


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHH
Q 046820          221 KAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVE  300 (350)
Q Consensus       221 k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~  300 (350)
                      |.|+.+++.+-..             .+    .+..+.+-++-+.+++...++...-+|+.+|..++..+++    ..  
T Consensus       158 KtAalai~Kly~~-------------~p----elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~----~l--  214 (746)
T PTZ00429        158 KTAAMGLGKLFHD-------------DM----QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE----KI--  214 (746)
T ss_pred             HHHHHHHHHHHhh-------------Cc----ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch----hh--
Confidence            8888888887431             11    1223445567777766667788889999999999876532    11  


Q ss_pred             HHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820          301 ALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH  336 (350)
Q Consensus       301 ~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~  336 (350)
                      -.-.+.+.+|+..|. +|++-.+-.   +|++|..+
T Consensus       215 ~l~~~~~~~Ll~~L~-e~~EW~Qi~---IL~lL~~y  246 (746)
T PTZ00429        215 ESSNEWVNRLVYHLP-ECNEWGQLY---ILELLAAQ  246 (746)
T ss_pred             HHHHHHHHHHHHHhh-cCChHHHHH---HHHHHHhc
Confidence            123455677776664 466666665   66666654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=94.13  E-value=8.8  Score=42.64  Aligned_cols=144  Identities=16%  Similarity=0.095  Sum_probs=76.2

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHH
Q 046820          160 GCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALS  239 (350)
Q Consensus       160 ~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~  239 (350)
                      +.|...|...+.+.|..|+..|-.+...            ....++.|..+++|+ ++.....|+.+|-++....+..-.
T Consensus       745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~------------~~~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~~~~~~~  811 (897)
T PRK13800        745 ESVAGAATDENREVRIAVAKGLATLGAG------------GAPAGDAVRALTGDP-DPLVRAAALAALAELGCPPDDVAA  811 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccc------------cchhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCcchhHHH
Confidence            3444455555555665555555554321            123467888888876 577777778887776432111111


Q ss_pred             HHHHHhCC-HhhHHHhh------cCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHH
Q 046820          240 VLDGICST-DCGRENAN------DKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLV  312 (350)
Q Consensus       240 vL~~L~~~-~eGr~ai~------~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~  312 (350)
                      ++..|... ..=|.+..      ....+++.|+..+..-+...+..|+.+|..+-   ++  . .        +.+.|-.
T Consensus       812 l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~--~-~--------a~~~L~~  877 (897)
T PRK13800        812 ATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWP---GD--P-A--------ARDALTT  877 (897)
T ss_pred             HHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC--H-H--------HHHHHHH
Confidence            22333221 11122111      13456677788776667777777887776541   11  1 1        1222222


Q ss_pred             HHHhcCchHHHHHHHHHHH
Q 046820          313 LLQVGCAERTKEKASEVLK  331 (350)
Q Consensus       313 llq~~~t~~ak~kA~~LLk  331 (350)
                      .+. +..+..|+-|.+.|.
T Consensus       878 al~-D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        878 ALT-DSDADVRAYARRALA  895 (897)
T ss_pred             HHh-CCCHHHHHHHHHHHh
Confidence            333 556778888777664

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=94.02  E-value=0.0089  Score=43.30  Aligned_cols=28  Identities=29%  Similarity=0.287  Sum_probs=19.1

Q ss_pred             cccccccccccCCccc-CCCCCCcccCCccc
Q 046820           21 RKETGASLIEKDPVTT-TPRNGITYDRVNIL   50 (350)
Q Consensus        21 ~~~~~~~eiM~DPVtl-~~~TG~TYDR~sIe   50 (350)
                      .+.-.+++.|+|||+- .  -||||||++|+
T Consensus        12 ~~CPiT~~~~~~PV~s~~--C~H~fek~aI~   40 (57)
T PF11789_consen   12 LKCPITLQPFEDPVKSKK--CGHTFEKEAIL   40 (57)
T ss_dssp             SB-TTTSSB-SSEEEESS--S--EEEHHHHH
T ss_pred             cCCCCcCChhhCCcCcCC--CCCeecHHHHH
Confidence            3445678899999985 4  49999999987

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.75  E-value=2  Score=47.82  Aligned_cols=151  Identities=16%  Similarity=0.183  Sum_probs=102.3

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820          158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA  237 (350)
Q Consensus       158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a  237 (350)
                      .++.+-.+|.+.++..|..|..+|-.+++..    .+..+|.-+.+++..+..|+|+ +|+-.-+|+.++..++..    
T Consensus       349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc----~~~m~~~l~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~std----  419 (1075)
T KOG2171|consen  349 LFEALEAMLQSTEWKERHAALLALSVIAEGC----SDVMIGNLPKILPIVLNGLNDP-HPRVRYAALNAIGQMSTD----  419 (1075)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHccc----HHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhh----
Confidence            5777778888999999998888888777543    2334555688999999999887 888888888888888642    


Q ss_pred             HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhc-cChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHH-HHHHHHH
Q 046820          238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILR-VSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQ-KLLVLLQ  315 (350)
Q Consensus       238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~-~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~-~LL~llq  315 (350)
                               .+-.-+.- -|.-.+|.++..+.+ .+++-+-||++.|.+....+..    -.-+-.=-+.++ +|+.++|
T Consensus       420 ---------l~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~----~~l~pYLd~lm~~~l~~L~~  485 (1075)
T KOG2171|consen  420 ---------LQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK----SILEPYLDGLMEKKLLLLLQ  485 (1075)
T ss_pred             ---------hcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHhc
Confidence                     11111111 144456778887766 4678899999999987665421    111222345566 5555556


Q ss_pred             hcCchHHHHHHHHHHHH
Q 046820          316 VGCAERTKEKASEVLKL  332 (350)
Q Consensus       316 ~~~t~~ak~kA~~LLk~  332 (350)
                      ++ ++..|+.|..-+--
T Consensus       486 ~~-~~~v~e~vvtaIas  501 (1075)
T KOG2171|consen  486 SS-KPYVQEQAVTAIAS  501 (1075)
T ss_pred             CC-chhHHHHHHHHHHH
Confidence            54 89999998765543

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.49  E-value=9.9  Score=38.74  Aligned_cols=194  Identities=11%  Similarity=0.126  Sum_probs=108.8

Q ss_pred             HHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCC
Q 046820           67 INSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLE  146 (350)
Q Consensus        67 lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~  146 (350)
                      .+..+.....+.++..+.-||+.|..+...      -+.+. +++.+..+|.   ++    ++.++..|+.++......+
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~------~~~~~-l~~~v~~ll~---~~----~~~VRk~A~~~l~~i~~~~  145 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP------EMAEP-LIPDVIKLLS---DP----SPYVRKKAALALLKIYRKD  145 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH------HHHHH-HHHHHHHHHH---SS----SHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhccc------chhhH-HHHHHHHHhc---CC----chHHHHHHHHHHHHHhccC
Confidence            444444444345666667788877777621      23322 4667777775   32    4778988888777322222


Q ss_pred             hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHH
Q 046820          147 GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVV  226 (350)
Q Consensus       147 ~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~a  226 (350)
                      +   ..+... .++.+..+|...++..+.+|..++..+ ...+ +.+...+   +.++..|.+++... +|-..-..++.
T Consensus       146 p---~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~-~~~~~~~---~~~~~~L~~~l~~~-~~~~q~~il~~  215 (526)
T PF01602_consen  146 P---DLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCND-DSYKSLI---PKLIRILCQLLSDP-DPWLQIKILRL  215 (526)
T ss_dssp             H---CCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH-HHHTTHH---HHHHHHHHHHHTCC-SHHHHHHHHHH
T ss_pred             H---HHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCc-chhhhhH---HHHHHHhhhccccc-chHHHHHHHHH
Confidence            2   222222 589999999888999999999999999 2211 1222222   45555555555433 34333333444


Q ss_pred             HHHhhh--------------------hH-----HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHH
Q 046820          227 IYHTIA--------------------SS-----ASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVS  281 (350)
Q Consensus       227 L~~L~~--------------------~~-----e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~  281 (350)
                      |..++.                    +.     -.|..++-.+...++    +  -..+++.+++.+...++.-+-.+..
T Consensus       216 l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~--~~~~~~~L~~lL~s~~~nvr~~~L~  289 (526)
T PF01602_consen  216 LRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----L--LQKAINPLIKLLSSSDPNVRYIALD  289 (526)
T ss_dssp             HTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----H--HHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred             HHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----H--HHhhHHHHHHHhhcccchhehhHHH
Confidence            433322                    11     134444444444433    1  1234677777666445567778888


Q ss_pred             HHHHHcccc
Q 046820          282 ILWKLCMNE  290 (350)
Q Consensus       282 iL~~Lc~~~  290 (350)
                      .|..++...
T Consensus       290 ~L~~l~~~~  298 (526)
T PF01602_consen  290 SLSQLAQSN  298 (526)
T ss_dssp             HHHHHCCHC
T ss_pred             HHHHhhccc
Confidence            888888754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.29  E-value=4.8  Score=41.07  Aligned_cols=129  Identities=19%  Similarity=0.191  Sum_probs=65.4

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCc
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASS  158 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~  158 (350)
                      ++-.+...++-|..++..++....-   ...++.+..++.+  .     +..+.-+++.++. .+...++     .-..+
T Consensus       205 ~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s--~-----~~~V~~e~~~~i~-~l~~~~~-----~~~~~  268 (526)
T PF01602_consen  205 DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQS--S-----SPSVVYEAIRLII-KLSPSPE-----LLQKA  268 (526)
T ss_dssp             SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHH--H-----HHHHHHHHHHHHH-HHSSSHH-----HHHHH
T ss_pred             chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhc--c-----ccHHHHHHHHHHH-HhhcchH-----HHHhh
Confidence            4444555555555555444333211   3455666666641  1     2345555556655 3332222     11235


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820          159 MGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA  232 (350)
Q Consensus       159 l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~  232 (350)
                      ++.++.+|.+.+.+.|.-+...|..++...     ...+-. ..   ..+..++...+..-++.++..|++++.
T Consensus       269 ~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-----~~~v~~-~~---~~~~~l~~~~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  269 INPLIKLLSSSDPNVRYIALDSLSQLAQSN-----PPAVFN-QS---LILFFLLYDDDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-----HHHHGT-HH---HHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHhhcccchhehhHHHHHHHhhccc-----chhhhh-hh---hhhheecCCCChhHHHHHHHHHhhccc
Confidence            777777777777777777777777776432     222211 11   112233322255666777777777764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=92.70  E-value=5.6  Score=41.58  Aligned_cols=211  Identities=14%  Similarity=0.172  Sum_probs=118.4

Q ss_pred             hccCchHHHHHHHHhccccccccchHHHH---HHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHH
Q 046820          105 VDNAAVSVLAAAFESFSKTCLDENVSVLE---EILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLL  181 (350)
Q Consensus       105 ~~aGai~~Lv~lL~~~~~~~~~~~~~~~e---~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL  181 (350)
                      .+.+++|.+-.+|.+|++.    ...+++   .|+.++...+  +...     -...+++++.-+....+.+|.+++.+|
T Consensus       210 ~EPyiv~~lp~il~~~~d~----~~~Vr~Aa~~a~kai~~~~--~~~a-----VK~llpsll~~l~~~kWrtK~aslell  278 (569)
T KOG1242|consen  210 FEPYIVPILPSILTNFGDK----INKVREAAVEAAKAIMRCL--SAYA-----VKLLLPSLLGSLLEAKWRTKMASLELL  278 (569)
T ss_pred             CCchHHhhHHHHHHHhhcc----chhhhHHHHHHHHHHHHhc--Ccch-----hhHhhhhhHHHHHHHhhhhHHHHHHHH
Confidence            3456777777777766543    233443   3444444222  2211     112344444445444789999999999


Q ss_pred             HHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh--H-H---HHHHHHHHHhCCH-------
Q 046820          182 TELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS--S-A---SALSVLDGICSTD-------  248 (350)
Q Consensus       182 ~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~--~-e---~aL~vL~~L~~~~-------  248 (350)
                      -.+....+  .... . .-+.+||-|.+.+-|. .+.-.+++..+|..+++.  | +   ..=.+|+.++...       
T Consensus       279 g~m~~~ap--~qLs-~-~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~  353 (569)
T KOG1242|consen  279 GAMADCAP--KQLS-L-CLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECL  353 (569)
T ss_pred             HHHHHhch--HHHH-H-HHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHH
Confidence            98875532  2222 2 2388999999999876 788999999999999753  1 1   1111222222211       


Q ss_pred             --hhHHHhhc--CCCChHHHHHHHhcc----ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh---c
Q 046820          249 --CGRENAND--KPLTMPVVVKKILRV----SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV---G  317 (350)
Q Consensus       249 --eGr~ai~~--~~~~v~~lv~~l~~~----S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~---~  317 (350)
                        .|+..++.  ++-.+..+|-.+.|+    |...+..++.|.+++|+.-.+  +..+     ...+++|+=-++.   +
T Consensus       354 ~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD--p~~l-----apfl~~Llp~lk~~~~d  426 (569)
T KOG1242|consen  354 DSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED--PKDL-----APFLPSLLPGLKENLDD  426 (569)
T ss_pred             HhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC--HHHH-----hhhHHHHhhHHHHHhcC
Confidence              12222221  344556666666554    335578899999999996521  1111     1123333322221   2


Q ss_pred             CchHHHHHHHHHH-HHHHhccC
Q 046820          318 CAERTKEKASEVL-KLMNLHRD  338 (350)
Q Consensus       318 ~t~~ak~kA~~LL-k~l~~~~~  338 (350)
                      --|.+|.-|..-| .++++...
T Consensus       427 ~~PEvR~vaarAL~~l~e~~g~  448 (569)
T KOG1242|consen  427 AVPEVRAVAARALGALLERLGE  448 (569)
T ss_pred             CChhHHHHHHHHHHHHHHHHHh
Confidence            1378888888777 66666444

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=92.39  E-value=14  Score=37.57  Aligned_cols=199  Identities=13%  Similarity=0.067  Sum_probs=121.2

Q ss_pred             CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhc-----ccCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 046820          108 AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHL-----GSASSMGCMIWFLNSGDLSRRRNAVLLLT  182 (350)
Q Consensus       108 Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i-----~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~  182 (350)
                      ..+..++.+|..   .   ...++.+..+..+.-+|..++..-..+     ..++.....+.+|.+++.-....|..+|-
T Consensus        53 ~y~~~~l~ll~~---~---~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt  126 (429)
T cd00256          53 QYVKTFVNLLSQ---I---DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA  126 (429)
T ss_pred             HHHHHHHHHHhc---c---CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence            567777777752   1   135567777777665555443221222     22567788888898888777888888888


Q ss_pred             HHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChH
Q 046820          183 ELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMP  262 (350)
Q Consensus       183 ~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~  262 (350)
                      .|.+...  ...... ...-++.-|...++++.+.+..              .-++..|..|...++-|..+..+. +++
T Consensus       127 ~l~~~~~--~~~~~~-~l~~~~~~l~~~l~~~~~~~~~--------------~~~v~~L~~LL~~~~~R~~f~~~~-~v~  188 (429)
T cd00256         127 KLACFGL--AKMEGS-DLDYYFNWLKEQLNNITNNDYV--------------QTAARCLQMLLRVDEYRFAFVLAD-GVP  188 (429)
T ss_pred             HHHhcCc--cccchh-HHHHHHHHHHHHhhccCCcchH--------------HHHHHHHHHHhCCchHHHHHHHcc-CHH
Confidence            8865421  110000 0012334455555543222222              345667777788888998886544 899


Q ss_pred             HHHHHHhccC--hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          263 VVVKKILRVS--ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       263 ~lv~~l~~~S--~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      .++..|...+  -+..=++.-++|.|.-..     .....+...+.++.|+.+++..--++.=|.+-.+|+.|-.
T Consensus       189 ~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~-----~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         189 TLVKLLSNATLGFQLQYQSIFCIWLLTFNP-----HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHhccH-----HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            9999887643  366788999999997642     2444555789999998888744223444444444554444

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=91.99  E-value=3.2  Score=43.79  Aligned_cols=123  Identities=12%  Similarity=0.044  Sum_probs=87.3

Q ss_pred             HHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccC
Q 046820          193 KVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVS  272 (350)
Q Consensus       193 ~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S  272 (350)
                      .+... ....++.+||+++.++ +..-.+.++.+|.|++.             ....=+..+. ..|+|..+.+.+....
T Consensus       411 L~tg~-~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVm-------------efs~~kskfl-~~ngId~l~s~~~~~~  474 (678)
T KOG1293|consen  411 LRTGL-KRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVM-------------EFSNLKSKFL-RNNGIDILESMLTDPD  474 (678)
T ss_pred             HHcCC-ccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHh-------------hcccHHHHHH-HcCcHHHHHHHhcCCC
Confidence            34444 3467899999999877 55777888889998863             1222345554 6789999999998888


Q ss_pred             hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          273 ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       273 ~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      +..+..++-+|..+.-++    ++......-.-+...++..+-.+--...++.+=.|||.|.-
T Consensus       475 ~n~r~~~~~~Lr~l~f~~----de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  475 FNSRANSLWVLRHLMFNC----DEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             chHHHHHHHHHHHHHhcc----hHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence            888889999999987765    23444444444444455555556567899998888887765

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=91.80  E-value=1.3  Score=40.15  Aligned_cols=180  Identities=13%  Similarity=0.091  Sum_probs=95.6

Q ss_pred             CChhHHHHHHHHHHHHHhcC--ccccchhhcc--CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhc
Q 046820           78 QDQVGCKDLVAKIKEWAKES--ESNKSCIVDN--AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHL  153 (350)
Q Consensus        78 ~~~~~~~~Al~~L~~Lak~s--~~nR~~i~~a--Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i  153 (350)
                      .+-..+.+|+.+|+.+.+.+  ..+...+.+.  .++..+...+.+       ....+..+|+.++.. +.  ...+..+
T Consensus        19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-------~Rs~v~~~A~~~l~~-l~--~~l~~~~   88 (228)
T PF12348_consen   19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-------LRSKVSKTACQLLSD-LA--RQLGSHF   88 (228)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-------H---HHHHHHHHHHH-HH--HHHGGGG
T ss_pred             cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-------hHHHHHHHHHHHHHH-HH--HHHhHhH
Confidence            45688899999999999987  2233333222  333444444431       123456666666552 22  1111112


Q ss_pred             c--cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhH-HHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820          154 G--SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGA-IEALFKLIEEPISPTATKAALVVIYHT  230 (350)
Q Consensus       154 ~--~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~-i~~LV~lL~~~~~~~a~k~Al~aL~~L  230 (350)
                      .  -...++.|+..+.++..-.+..|..+|..+....   .    . . +.+ ++.+.....+. ++.....++..|..+
T Consensus        89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~---~----~-~-~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~  158 (228)
T PF12348_consen   89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESC---S----Y-S-PKILLEILSQGLKSK-NPQVREECAEWLAII  158 (228)
T ss_dssp             HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--------H----HHHHHHHHHHTT-S--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHC---C----c-H-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            1  1346888888888888888999999999987542   1    1 1 344 44555555554 677777667766666


Q ss_pred             hhhHHHHHHHHHHHhCCHhhHHHhhcC----CCChHHHHHHHhccChhHHHHHHHHHHHHccccc
Q 046820          231 IASSASALSVLDGICSTDCGRENANDK----PLTMPVVVKKILRVSELATELSVSILWKLCMNEK  291 (350)
Q Consensus       231 ~~~~e~aL~vL~~L~~~~eGr~ai~~~----~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~  291 (350)
                      .....              ........    ...++.+++.+...++..++.|-.+++.+.+..+
T Consensus       159 l~~~~--------------~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  159 LEKWG--------------SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             HTT-------------------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHcc--------------chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            43211              00111111    1235666776777788999999999999987654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=91.78  E-value=0.068  Score=55.59  Aligned_cols=32  Identities=34%  Similarity=0.353  Sum_probs=26.8

Q ss_pred             CCcc-ccccccccccCCcccCCCCCCcccCCccc
Q 046820           18 QPAR-KETGASLIEKDPVTTTPRNGITYDRVNIL   50 (350)
Q Consensus        18 ~~~~-~~~~~~eiM~DPVtl~~~TG~TYDR~sIe   50 (350)
                      +||. .|-+-=.||||||.++ +||+|-||+-|.
T Consensus       851 vPDeFlDPLmftimkdPV~Lp-~S~i~IDRSTik  883 (929)
T COG5113         851 VPDEFLDPLMFTIMKDPVKLP-TSRITIDRSTIK  883 (929)
T ss_pred             CchhhhCchhhhcccCCeecc-cccccccHHHHH
Confidence            8885 4555669999999996 579999999998

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=91.77  E-value=3.7  Score=37.14  Aligned_cols=164  Identities=15%  Similarity=0.133  Sum_probs=77.5

Q ss_pred             ccCCHHHHHHHHHHHHHHhcCCCchhH-HhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh------------
Q 046820          167 NSGDLSRRRNAVLLLTELVSSDSDQRK-VNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS------------  233 (350)
Q Consensus       167 ~~gs~~~r~~Aa~lL~~Ls~~~~~~~~-~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~------------  233 (350)
                      .+.+++.|..|..-|..+...+..... ...+.....++..+...+.+. .....+.|+.++-.++..            
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            345788888888888888654300011 111111123444555555543 234566777666666431            


Q ss_pred             ---------------HHHHHHHHHHHhCCHhhHHHhhcCCCC-hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHH
Q 046820          234 ---------------SASALSVLDGICSTDCGRENANDKPLT-MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTA  297 (350)
Q Consensus       234 ---------------~e~aL~vL~~L~~~~eGr~ai~~~~~~-v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~  297 (350)
                                     .+.|..+|..++..-..      .... ++.+...+..-++..++.++..|..+....+......
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSY------SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence                           13555555555553210      0111 2222222334567888889988888877654100001


Q ss_pred             HHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccC
Q 046820          298 FVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRD  338 (350)
Q Consensus       298 ~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~  338 (350)
                      .....-...++.+. -.-.|..+.+|+.|+.++..|...|+
T Consensus       170 ~~~~~~~~l~~~l~-~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  170 QKSAFLKQLVKALV-KLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             --HHHHHHHHHHHH-HHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             cccchHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            00000011233232 23347789999999999999988775

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=91.58  E-value=8.3  Score=33.84  Aligned_cols=119  Identities=11%  Similarity=0.179  Sum_probs=84.2

Q ss_pred             cCCcHHHHHHHHccCCH------HHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCC-ChHHHHHHHHHH
Q 046820          155 SASSMGCMIWFLNSGDL------SRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPI-SPTATKAALVVI  227 (350)
Q Consensus       155 ~~~~l~~Lv~~L~~gs~------~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~-~~~a~k~Al~aL  227 (350)
                      +.+++..|+.++++|+.      +.=.++...+.+|...+-  -.-+.+ + +.+|.-.+..+.... ++.         
T Consensus         9 ~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~--vsWd~l-~-~~FI~Kia~~Vn~~~~d~~---------   75 (160)
T PF11841_consen    9 SRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI--VSWDTL-S-DSFIKKIASYVNSSAMDAS---------   75 (160)
T ss_pred             hccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc--Cchhhc-c-HHHHHHHHHHHccccccch---------
Confidence            45789999999998863      333446666666665421  123445 3 678888888887442 221         


Q ss_pred             HHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccc
Q 046820          228 YHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEK  291 (350)
Q Consensus       228 ~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~  291 (350)
                           --+.||++|+.+.......-..+...-.++.++..+...++.-+-+|++.+-+|....+
T Consensus        76 -----i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   76 -----ILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             -----HHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence                 12478888888877666655555678889999999988888889999999999988764

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=91.53  E-value=7.7  Score=36.57  Aligned_cols=150  Identities=12%  Similarity=0.067  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCCcHH
Q 046820           82 GCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSASSMG  160 (350)
Q Consensus        82 ~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l~  160 (350)
                      -.+.|+.-+.-+|.+ ++.|..+..+-+.-.|-.+|.-.+.+  -.....+-.++.++-.++..+| +--+-+...+.++
T Consensus        95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~--r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP  171 (293)
T KOG3036|consen   95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKS--RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP  171 (293)
T ss_pred             hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccC--CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence            345677666666655 67788888887776777777521111  1223455667777765555565 4344556789999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHhcCCCchhH-Hh---hhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH
Q 046820          161 CMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRK-VN---VLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS  234 (350)
Q Consensus       161 ~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~-~~---~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~  234 (350)
                      ..++.+.+||..+|.-|+.++..+..++++=.+ |.   ......-.+..+|.-+.+..+++..|..+++..+|+.+.
T Consensus       172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            999999999999999999999988766431111 11   111112333344433334458899998888888887543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=90.92  E-value=20  Score=36.46  Aligned_cols=191  Identities=13%  Similarity=0.060  Sum_probs=112.7

Q ss_pred             hHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820          129 VSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEAL  207 (350)
Q Consensus       129 ~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L  207 (350)
                      .-+++.+..+|..+++.+.++.........++-+...|+++ +.....-|+..|..|....   .++..+-+ .+.++.|
T Consensus       115 ~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~---~~R~~f~~-~~~v~~L  190 (429)
T cd00256         115 QFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD---EYRFAFVL-ADGVPTL  190 (429)
T ss_pred             hhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc---hHHHHHHH-ccCHHHH
Confidence            44667777777643332221100000011334555666665 4677777888898888763   78877755 5689999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-ChhHHHHHHHHHHHH
Q 046820          208 FKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV-SELATELSVSILWKL  286 (350)
Q Consensus       208 V~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~-S~~~~E~Av~iL~~L  286 (350)
                      +.+|+...      .....+|+.+       -++=.|+=.+++...+ .+.+.|+.+++.+... .....--++++|.|+
T Consensus       191 ~~~L~~~~------~~~Ql~Y~~l-------l~lWlLSF~~~~~~~~-~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nl  256 (429)
T cd00256         191 VKLLSNAT------LGFQLQYQSI-------FCIWLLTFNPHAAEVL-KRLSLIQDLSDILKESTKEKVIRIVLAIFRNL  256 (429)
T ss_pred             HHHHhhcc------ccHHHHHHHH-------HHHHHHhccHHHHHhh-ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            99998643      1233344432       1222233334444444 4678899999977654 356678899999999


Q ss_pred             ccccccc--hHHHHHHHHhhchHHHHHHHHHhcC--chHHHHHHHHHHHHHHhccC
Q 046820          287 CMNEKRE--EKTAFVEALQVGAFQKLLVLLQVGC--AERTKEKASEVLKLMNLHRD  338 (350)
Q Consensus       287 c~~~~~~--~~~~~~~~~~~G~v~~LL~llq~~~--t~~ak~kA~~LLk~l~~~~~  338 (350)
                      ...+.+.  ...+...|+..|+.+ ++..|+...  -+...+--..|-..|....+
T Consensus       257 l~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k  311 (429)
T cd00256         257 ISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQ  311 (429)
T ss_pred             hhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            8865321  124567777777655 666776432  24555555555555555433

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.86  E-value=3.1  Score=40.28  Aligned_cols=187  Identities=14%  Similarity=0.131  Sum_probs=107.6

Q ss_pred             HHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhcc-CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC
Q 046820           66 EINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDN-AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP  144 (350)
Q Consensus        66 ~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~a-Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls  144 (350)
                      +++.-+.+.    ++..+..|+..+-.++..  .-+.+.... -.++.|..++.   ..      .-.+.|+++|. |++
T Consensus         7 elv~ll~~~----sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~---~~------~~~~~a~~alV-nls   70 (353)
T KOG2973|consen    7 ELVELLHSL----SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLK---DL------DPAEPAATALV-NLS   70 (353)
T ss_pred             HHHHHhccC----ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHcc---Cc------ccccHHHHHHH-HHH
Confidence            444445443    456677788888888766  334444332 56777888774   22      11577889999 898


Q ss_pred             CChhhHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhch-----hhHHHHHHHHhcCCCChH
Q 046820          145 LEGEALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSEN-----EGAIEALFKLIEEPISPT  218 (350)
Q Consensus       145 ~~~e~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~-----~g~i~~LV~lL~~~~~~~  218 (350)
                      -+.+-++.+... .+..+++.+-.. +.-++. .+.+|.+|+...+  .....+...     .|.+...+.+...+.+..
T Consensus        71 q~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~-~cmlL~NLs~~~~--~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~  146 (353)
T KOG2973|consen   71 QKEELRKKLLQD-LLKVLMDMLTDPQSPLADL-ICMLLSNLSRDDD--EVAALLTNLTEKKDSGLMRLARAFCDKSYNAY  146 (353)
T ss_pred             hhHHHHHHHHHH-HHHHHHHHhcCcccchHHH-HHHHHHHhccCch--HHHHHHHhcccccccchHHHHHHHhCcccccc
Confidence            666555555444 888999988776 444444 7889999997753  333333221     233333333333221110


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHh--c--cChhHHHHHHHHHHHHcc
Q 046820          219 ATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKIL--R--VSELATELSVSILWKLCM  288 (350)
Q Consensus       219 a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~--~--~S~~~~E~Av~iL~~Lc~  288 (350)
                      +             .-..-.-++.+|...+.||.-+. ++--+  .+.+++  .  .|..-+..-+++|.|.|-
T Consensus       147 a-------------~f~ylA~vf~nls~~~~gR~l~~-~~k~~--p~~kll~ft~~~s~vRr~GvagtlkN~cF  204 (353)
T KOG2973|consen  147 A-------------EFHYLAPVFANLSQFEAGRKLLL-EPKRF--PDQKLLPFTSEDSQVRRGGVAGTLKNCCF  204 (353)
T ss_pred             c-------------chhHHHHHHHHHhhhhhhhhHhc-chhhh--hHhhhhcccccchhhhccchHHHHHhhhc
Confidence            0             01244557888888888998875 44422  223332  2  233445667777777664

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.77  E-value=22  Score=39.99  Aligned_cols=177  Identities=12%  Similarity=0.045  Sum_probs=103.0

Q ss_pred             chHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhccc-CCcHHHHHHHHccCCHHHHHHHHHHHHHHhc
Q 046820          109 AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGS-ASSMGCMIWFLNSGDLSRRRNAVLLLTELVS  186 (350)
Q Consensus       109 ai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~-~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~  186 (350)
                      +.|++...+..+-.+   .+..-+..++-+|.   .+.+ -.+.++.. +..++-++..|+..++..|.-|..+|-.++.
T Consensus       345 v~p~~~~~l~~~l~S---~~w~~R~AaL~Als---~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st  418 (1075)
T KOG2171|consen  345 VLPPLFEALEAMLQS---TEWKERHAALLALS---VIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST  418 (1075)
T ss_pred             ehHHHHHHHHHHhcC---CCHHHHHHHHHHHH---HHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence            566666666433221   12334555665555   2333 22333333 5577777788888899999999999999986


Q ss_pred             CCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHH
Q 046820          187 SDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVK  266 (350)
Q Consensus       187 ~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~  266 (350)
                      +-. +.....-  ..-++++|+.++.+..+++-...|..+|.|+...             |+   ..++  ..-++.+++
T Consensus       419 dl~-p~iqk~~--~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-------------~~---~~~l--~pYLd~lm~  477 (1075)
T KOG2171|consen  419 DLQ-PEIQKKH--HERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-------------CD---KSIL--EPYLDGLME  477 (1075)
T ss_pred             hhc-HHHHHHH--HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-------------Cc---HHHH--HHHHHHHHH
Confidence            532 2222111  2456678899998777778778888888877532             21   1111  111333343


Q ss_pred             ----HH-hccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhc
Q 046820          267 ----KI-LRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVG  317 (350)
Q Consensus       267 ----~l-~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~  317 (350)
                          .+ .++++..+|.+|+++..++.-.......+     =.-.++-|...||..
T Consensus       478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY-----~d~~Mp~L~~~L~n~  528 (1075)
T KOG2171|consen  478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPY-----FDRLMPLLKNFLQNA  528 (1075)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhH-----HHHHHHHHHHHHhCC
Confidence                22 24678899999999988886433211111     122456666666643

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=88.50  E-value=1.5  Score=30.58  Aligned_cols=55  Identities=18%  Similarity=0.124  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820          171 LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHT  230 (350)
Q Consensus       171 ~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L  230 (350)
                      +..|.+|+..|-+++...+ +.... .  .+.+++.|+.+|+|+ ++.-...|..+|-+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~-~~~~~-~--~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCP-ELLQP-Y--LPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTH-HHHHH-H--HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccH-HHHHH-H--HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            3568889999988765532 22232 2  379999999999876 445566667776553

...

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=88.29  E-value=0.18  Score=34.05  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=16.9

Q ss_pred             cccccCCcccCCCCCCcccCCccc
Q 046820           27 SLIEKDPVTTTPRNGITYDRVNIL   50 (350)
Q Consensus        27 ~eiM~DPVtl~~~TG~TYDR~sIe   50 (350)
                      +++++|||++.  -|++|=+.-|+
T Consensus         5 ~~~~~~Pv~l~--CGH~FC~~Cl~   26 (42)
T PF15227_consen    5 LDLFKDPVSLP--CGHSFCRSCLE   26 (42)
T ss_dssp             TSB-SSEEE-S--SSSEEEHHHHH
T ss_pred             chhhCCccccC--CcCHHHHHHHH
Confidence            58999999999  99999776654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=87.25  E-value=4.5  Score=41.25  Aligned_cols=141  Identities=14%  Similarity=0.081  Sum_probs=91.5

Q ss_pred             HHHHHHHHHhcCccccchhhccCchHHHHHHHHhccc----cccccchHHHHHHHHHHHhhCC-CChhhHhhcccCCcHH
Q 046820           86 LVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSK----TCLDENVSVLEEILSTLILLFP-LEGEALTHLGSASSMG  160 (350)
Q Consensus        86 Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~----~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k~~i~~~~~l~  160 (350)
                      ||..||-++++. .+-.-|.....+..|+.+-. +..    .....+..+..+|+.+|. |+= .++..+....+.+..+
T Consensus         1 ~L~~LRiLsRd~-~~~~~l~~~~~l~~L~~~a~-l~~~~~~~~~~~~~~v~~EALKCL~-N~lf~s~~aR~~~~~~~~~~   77 (446)
T PF10165_consen    1 CLETLRILSRDP-TGLDPLFTEEGLSTLLKHAG-LSESDEDEFESPDPDVSREALKCLC-NALFLSPSARQIFVDLGLAE   77 (446)
T ss_pred             CHHHHHHHccCc-ccchhhccHHHHHHHHHhcC-CcccccccccCCChHHHHHHHHHHH-HHHhCCHHHHHHHHHcCcHH
Confidence            356677777664 34444444444555555441 111    000234678899999998 664 4456778888889999


Q ss_pred             HHHHHHccC-----CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcC-------C---------CChHH
Q 046820          161 CMIWFLNSG-----DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEE-------P---------ISPTA  219 (350)
Q Consensus       161 ~Lv~~L~~g-----s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~-------~---------~~~~a  219 (350)
                      .++..|+..     +.+...-..++||=++....  +.+..+-...+.+..++..|..       .         .+..+
T Consensus        78 ~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~--~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~  155 (446)
T PF10165_consen   78 KLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRP--DDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEA  155 (446)
T ss_pred             HHHHHHHcccccCCChhHHHHHHHHHHHHhcCCh--hHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHH
Confidence            999999987     78999999999998876543  3433332445666666665531       1         13345


Q ss_pred             HHHHHHHHHHhh
Q 046820          220 TKAALVVIYHTI  231 (350)
Q Consensus       220 ~k~Al~aL~~L~  231 (350)
                      ....++.|||+.
T Consensus       156 l~EiLKllFNit  167 (446)
T PF10165_consen  156 LSEILKLLFNIT  167 (446)
T ss_pred             HHHHHHHHHHhh
Confidence            678899999994

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=87.22  E-value=17  Score=38.07  Aligned_cols=131  Identities=13%  Similarity=0.140  Sum_probs=93.7

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCC---hHHHHHHHHHHHHhhh--
Q 046820          158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPIS---PTATKAALVVIYHTIA--  232 (350)
Q Consensus       158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~---~~a~k~Al~aL~~L~~--  232 (350)
                      ....+.+++.+|+..+|..|..-|-+||.+.  ....+.| + ...+..|..++.++..   ..-..-.++++..+-.  
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~--~fa~efi-~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehg  159 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDP--TFAEEFI-R-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHG  159 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccH--HHHHHHH-h-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhc
Confidence            5677889999999999999888888888653  2445555 5 4566888999988732   2333444555554421  


Q ss_pred             ---h------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHH
Q 046820          233 ---S------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWK  285 (350)
Q Consensus       233 ---~------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~  285 (350)
                         |                        ...||.+|+++.-+.......+.+.--+..|+..+..+...-.-+|.+.|-+
T Consensus       160 vvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  160 VVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence               1                        1589999999988876555555677778888888877776666679999999


Q ss_pred             Hcccccc
Q 046820          286 LCMNEKR  292 (350)
Q Consensus       286 Lc~~~~~  292 (350)
                      +-....+
T Consensus       240 l~~~a~~  246 (713)
T KOG2999|consen  240 LFRKAPD  246 (713)
T ss_pred             HHhhCCh
Confidence            8887654

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=87.08  E-value=1.5  Score=38.49  Aligned_cols=53  Identities=21%  Similarity=0.337  Sum_probs=46.9

Q ss_pred             HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820          236 SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM  288 (350)
Q Consensus       236 ~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~  288 (350)
                      .++..|..|+.+..|+..+..++.+|..++..+...+...+..|..+|..||.
T Consensus       135 ~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc~  187 (187)
T PF06371_consen  135 ECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALCL  187 (187)
T ss_dssp             HHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Confidence            67888889999999999999999999999999988888999999999999983

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=86.27  E-value=16  Score=38.66  Aligned_cols=141  Identities=11%  Similarity=0.165  Sum_probs=93.4

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCC
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSAS  157 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~  157 (350)
                      |......|+-.++.+++.=..-|.-+..+.++.+|+.+|.   .+    +..++..++.+|. |+-.+= ..|...-+.+
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~---dp----~~~i~~~~lgai~-NlVmefs~~kskfl~~n  461 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM---DP----EIMIMGITLGAIC-NLVMEFSNLKSKFLRNN  461 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh---Cc----chhHHHHHHHHHH-HHHhhcccHHHHHHHcC
Confidence            4333445666666666554444444777788999999995   32    3557777889998 776432 4466666778


Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820          158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHT  230 (350)
Q Consensus       158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L  230 (350)
                      .|+-+...+..-....|.++..+|+.++-..+ +..+...=+ .=.-..++.+..|+ ++.-..-++..|.||
T Consensus       462 gId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d-e~~k~~~~~-ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl  531 (678)
T KOG1293|consen  462 GIDILESMLTDPDFNSRANSLWVLRHLMFNCD-EEEKFQLLA-KIPANLILDLINDP-DWAVQEQCFQLLRNL  531 (678)
T ss_pred             cHHHHHHHhcCCCchHHHHHHHHHHHHHhcch-HHHHHHHHH-HhhHHHHHHHHhCC-CHHHHHHHHHHHHHh
Confidence            99999999999999999999999999986644 333322201 11224555666655 655555556666666

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=86.18  E-value=2.2  Score=34.58  Aligned_cols=66  Identities=12%  Similarity=0.141  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC-CCChhhHhhcc
Q 046820           83 CKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF-PLEGEALTHLG  154 (350)
Q Consensus        83 ~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L-s~~~e~k~~i~  154 (350)
                      +...++-|..++.++..+...+.+.|.+|.+++.-. +  +  +.++-..|-|+.++. || .-+++|+..|.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~-i--D--~~nP~irEwai~aiR-nL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCN-I--D--DHNPFIREWAIFAIR-NLCEGNPENQEFIA   69 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcC-C--C--cccHHHHHHHHHHHH-HHHhCCHHHHHHHH
Confidence            445678889999999999999999999999998764 2  2  346888999999999 55 44558887764

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=86.13  E-value=16  Score=30.85  Aligned_cols=77  Identities=17%  Similarity=0.084  Sum_probs=58.6

Q ss_pred             hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchH---HHHHHHHHHHHHHhcc
Q 046820          261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAER---TKEKASEVLKLMNLHR  337 (350)
Q Consensus       261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~---ak~kA~~LLk~l~~~~  337 (350)
                      +..|-+.|...++..+-+|+.+|=.+.+++|   .....++.+...+..|..++....+..   +|+|+.++|+......
T Consensus        44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg---~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   44 ARALRKRLKHGNPNVQLLALTLLDALVKNCG---PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH---HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            5678888888899999999999999999886   356677777777888877776544444   8999777777766644


Q ss_pred             CCC
Q 046820          338 DRL  340 (350)
Q Consensus       338 ~~~  340 (350)
                      ++.
T Consensus       121 ~~~  123 (140)
T PF00790_consen  121 KSD  123 (140)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            433

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=85.88  E-value=7.3  Score=39.93  Aligned_cols=137  Identities=12%  Similarity=0.112  Sum_probs=86.7

Q ss_pred             hcccCCcHHHHHHHHccCCHHH--HHHHHHHHHHHhcCCCchhHHhhhhch-hhHHHHHHHHhcCCCChHHHHHHHHHHH
Q 046820          152 HLGSASSMGCMIWFLNSGDLSR--RRNAVLLLTELVSSDSDQRKVNVLSEN-EGAIEALFKLIEEPISPTATKAALVVIY  228 (350)
Q Consensus       152 ~i~~~~~l~~Lv~~L~~gs~~~--r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~-~g~i~~LV~lL~~~~~~~a~k~Al~aL~  228 (350)
                      .|...|.++.|++++...+.++  |..|+.+|+.....    ++++.|.+. .|.|-.|   -+....+...+       
T Consensus       175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a----eN~d~va~~~~~~Il~l---AK~~e~~e~aR-------  240 (832)
T KOG3678|consen  175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA----ENRDRVARIGLGVILNL---AKEREPVELAR-------  240 (832)
T ss_pred             HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh----hhhhHHhhccchhhhhh---hhhcCcHHHHH-------
Confidence            4445689999999999986665  99999999998754    455555331 2444333   33332333333       


Q ss_pred             HhhhhHHHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchH
Q 046820          229 HTIASSASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAF  307 (350)
Q Consensus       229 ~L~~~~e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v  307 (350)
                             ..+.+|+++-.+ +|-...+. .++++-.++--..+..+.--.||+-+|.+..-+++   -++...|++-.+-
T Consensus       241 -------~~~~il~~mFKHSeet~~~Lv-aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~---~a~qrrmveKr~~  309 (832)
T KOG3678|consen  241 -------SVAGILEHMFKHSEETCQRLV-AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGG---QAVQRRMVEKRAA  309 (832)
T ss_pred             -------HHHHHHHHHhhhhHHHHHHHH-hhcccchheeecccCCHHHHHHHHHHhhhhhhhch---hHHHHHHHHhhhh
Confidence                   445556666554 33344443 56777666555556667667788888888777664   3567778877777


Q ss_pred             HHHHHH
Q 046820          308 QKLLVL  313 (350)
Q Consensus       308 ~~LL~l  313 (350)
                      +.|+-+
T Consensus       310 EWLF~L  315 (832)
T KOG3678|consen  310 EWLFPL  315 (832)
T ss_pred             hhhhhh
Confidence            766543

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=85.77  E-value=12  Score=35.49  Aligned_cols=145  Identities=13%  Similarity=0.094  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCCcHH
Q 046820           82 GCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSASSMG  160 (350)
Q Consensus        82 ~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l~  160 (350)
                      -.+.|+.=+.-+|. +++.|..+.++.+.-.|-.+|.-.+...  ....++-..+.++-.++..++ |.-.-+.+.+.++
T Consensus        66 RVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r--~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiip  142 (262)
T PF04078_consen   66 RVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTR--PFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIP  142 (262)
T ss_dssp             HHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SH--HHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHH
T ss_pred             HHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhcccccc--ccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHH
Confidence            34568877777887 5788999999998888888886211110  112233445555543334343 4445556789999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc-------CCCChHHHHHHHHHHHHhhh
Q 046820          161 CMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE-------EPISPTATKAALVVIYHTIA  232 (350)
Q Consensus       161 ~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~-------~~~~~~a~k~Al~aL~~L~~  232 (350)
                      .-.+.++.|+.-+|.-|..++..+..++   .-..-+....+=+.++..+|.       +..+++..|-..++-..|+.
T Consensus       143 lcLr~me~GselSKtvAtfIlqKIL~dd---~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd  218 (262)
T PF04078_consen  143 LCLRIMEFGSELSKTVATFILQKILLDD---VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD  218 (262)
T ss_dssp             HHHHHHHHS-HHHHHHHHHHHHHHHHSH---HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHcch---hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence            9999999999999999999999998663   222233343444444444433       33467777766666666653

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PTZ00429 beta-adaptin; Provisional

Probab=85.71  E-value=38  Score=36.98  Aligned_cols=92  Identities=14%  Similarity=0.198  Sum_probs=67.8

Q ss_pred             cchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHH
Q 046820          127 ENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEA  206 (350)
Q Consensus       127 ~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~  206 (350)
                      .++.++-.|+.+|. .+...+ .-.     -.+..+.+.|...++-.|..|+..+..|....  +   +.+ ...|+++.
T Consensus       117 ~Np~IRaLALRtLs-~Ir~~~-i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~--p---elv-~~~~~~~~  183 (746)
T PTZ00429        117 SSPVVRALAVRTMM-CIRVSS-VLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD--M---QLF-YQQDFKKD  183 (746)
T ss_pred             CCHHHHHHHHHHHH-cCCcHH-HHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--c---ccc-cccchHHH
Confidence            35778888988888 454332 111     24666777788889999999999999997543  1   233 33688999


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820          207 LFKLIEEPISPTATKAALVVIYHTIA  232 (350)
Q Consensus       207 LV~lL~~~~~~~a~k~Al~aL~~L~~  232 (350)
                      |.++|.|. ++.-+-+|+.+|+.++.
T Consensus       184 L~~LL~D~-dp~Vv~nAl~aL~eI~~  208 (746)
T PTZ00429        184 LVELLNDN-NPVVASNAAAIVCEVND  208 (746)
T ss_pred             HHHHhcCC-CccHHHHHHHHHHHHHH
Confidence            99999876 77888999999999964

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=84.90  E-value=2.6  Score=39.42  Aligned_cols=82  Identities=20%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhhCCCChhhHhhcccCC-------cHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchh
Q 046820          130 SVLEEILSTLILLFPLEGEALTHLGSAS-------SMGCMIWFLNS-GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENE  201 (350)
Q Consensus       130 ~~~e~Al~~L~~~Ls~~~e~k~~i~~~~-------~l~~Lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~  201 (350)
                      ..|.-|+.+|. -|++.|.|-..|-+.+       .+..|+++|.. ++.-.|+-|..+|.+|+..+  +..+..|+...
T Consensus       139 SPqrlaLEaLc-KLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~--~~~~r~iA~q~  215 (257)
T PF12031_consen  139 SPQRLALEALC-KLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGD--EAAARAIAMQK  215 (257)
T ss_pred             CHHHHHHHHHH-HhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhccc--HHHHHHHHHhh
Confidence            45888999999 6998888887664433       34445555543 48899999999999998664  35565677678


Q ss_pred             hHHHHHHHHhcCC
Q 046820          202 GAIEALFKLIEEP  214 (350)
Q Consensus       202 g~i~~LV~lL~~~  214 (350)
                      ++|..||.++.+.
T Consensus       216 ~~i~~Li~FiE~a  228 (257)
T PF12031_consen  216 PCISHLIAFIEDA  228 (257)
T ss_pred             chHHHHHHHHHHH
Confidence            9999999999753

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=84.82  E-value=6.5  Score=33.04  Aligned_cols=82  Identities=17%  Similarity=0.121  Sum_probs=59.7

Q ss_pred             hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh--cCchHHHHHHHHHHHHHHhccC
Q 046820          261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV--GCAERTKEKASEVLKLMNLHRD  338 (350)
Q Consensus       261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~--~~t~~ak~kA~~LLk~l~~~~~  338 (350)
                      +.+|-++|...++..+-.|+.+|=.+.+++|.   ....+......+..|..++..  ...+..|+|+.++++.......
T Consensus        39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~---~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGK---PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh---HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            56777888888899999999999999998863   455666665555556666654  3467999998888888777666


Q ss_pred             CC-CCCCc
Q 046820          339 RL-ECVDG  345 (350)
Q Consensus       339 ~~-~c~~~  345 (350)
                      ++ +..+.
T Consensus       116 ~~~~~~~~  123 (133)
T cd03561         116 GHSEDLPG  123 (133)
T ss_pred             CCCccchH
Confidence            55 54443

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=83.18  E-value=9.7  Score=32.58  Aligned_cols=79  Identities=15%  Similarity=0.095  Sum_probs=60.8

Q ss_pred             ChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCC
Q 046820          260 TMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDR  339 (350)
Q Consensus       260 ~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~  339 (350)
                      ++.++-++|...++...-.|..+|-.+.+++|   .....+....+.+..|..+++....+..|+|+-++++......++
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG---~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  118 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCG---THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN  118 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC---HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            45778888888888889999999988888876   356777778888888887777666689999977777766665444


Q ss_pred             CC
Q 046820          340 LE  341 (350)
Q Consensus       340 ~~  341 (350)
                      .|
T Consensus       119 ~~  120 (142)
T cd03569         119 KP  120 (142)
T ss_pred             Cc
Confidence            43

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=82.10  E-value=24  Score=36.37  Aligned_cols=123  Identities=15%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh--hhHhhcccCCc
Q 046820           81 VGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG--EALTHLGSASS  158 (350)
Q Consensus        81 ~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~--e~k~~i~~~~~  158 (350)
                      +.+...+.-|..+-|.|++....++++|.+..++--.+   ..    ++.++.++.-+|- |..+.-  +.++.|.+..+
T Consensus       237 e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~r---Rt----~P~lLRH~ALAL~-N~~L~~~~a~qrrmveKr~  308 (832)
T KOG3678|consen  237 ELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCR---RT----DPALLRHCALALG-NCALHGGQAVQRRMVEKRA  308 (832)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecc---cC----CHHHHHHHHHHhh-hhhhhchhHHHHHHHHhhh
Confidence            33444555555666666666666677766665554333   22    2556666555555 555443  55555544433


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc
Q 046820          159 MGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE  212 (350)
Q Consensus       159 l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~  212 (350)
                      -+-|..+--+.+.-.|.+|+.+..-|+++..-+.....-|. -.++++||..+.
T Consensus       309 ~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~T-laLVEPlva~~D  361 (832)
T KOG3678|consen  309 AEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGT-LALVEPLVASLD  361 (832)
T ss_pred             hhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccc-hhhhhhhhhccC
Confidence            33333333344677889999999999876421112222222 457788887775

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=81.70  E-value=11  Score=32.27  Aligned_cols=79  Identities=18%  Similarity=0.063  Sum_probs=59.5

Q ss_pred             ChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCC
Q 046820          260 TMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDR  339 (350)
Q Consensus       260 ~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~  339 (350)
                      ++.+|.++|...++...-.|+.+|-.+.+++|   .....++.+...+..|..++.....+..|+|..++++.......+
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG---~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCG---KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC---HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            35778888877788889999999999999987   357778888888888777776545689999976666665554443


Q ss_pred             CC
Q 046820          340 LE  341 (350)
Q Consensus       340 ~~  341 (350)
                      +|
T Consensus       115 ~~  116 (144)
T cd03568         115 DP  116 (144)
T ss_pred             Cc
Confidence            33

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=81.69  E-value=4  Score=33.12  Aligned_cols=55  Identities=9%  Similarity=0.219  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhC-CHhhHHHhhcCCCChHHHHHHHh--ccChhHHHHHHHHHHHHccccc
Q 046820          236 SALSVLDGICS-TDCGRENANDKPLTMPVVVKKIL--RVSELATELSVSILWKLCMNEK  291 (350)
Q Consensus       236 ~aL~vL~~L~~-~~eGr~ai~~~~~~v~~lv~~l~--~~S~~~~E~Av~iL~~Lc~~~~  291 (350)
                      ..+.++.+||- +++-...+ .+.++||.++....  ..+|-.+|+|+-++-+||..+.
T Consensus         5 ~lvrlianl~~~~~~~Qd~v-r~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~   62 (102)
T PF09759_consen    5 DLVRLIANLCYKNKEVQDLV-RELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP   62 (102)
T ss_pred             HHHHHHHHHHhCCHHHHHHH-HHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence            35667777765 45555566 47778999988743  3578899999999999999764

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=81.69  E-value=10  Score=32.45  Aligned_cols=71  Identities=18%  Similarity=0.132  Sum_probs=53.4

Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 046820          157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYH  229 (350)
Q Consensus       157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~  229 (350)
                      .++..|.+=|.++++.....|..+|..+..... ..+...|++ .+++..|++++.+..+++-++-.+..+.+
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG-~~fh~evas-~~fl~~l~~l~~~~~~~~Vk~kil~li~~  111 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCG-THFHDEVAS-REFMDELKDLIKTTKNEEVRQKILELIQA  111 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC-HHHHHHHhh-HHHHHHHHHHHcccCCHHHHHHHHHHHHH
Confidence            477778888889999999999999999997753 456777866 89999999999875455444444444433

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=80.85  E-value=15  Score=32.00  Aligned_cols=116  Identities=15%  Similarity=0.169  Sum_probs=73.9

Q ss_pred             chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcc--ccchhhccCchHHHHHHHHhcccc--ccccchHHHHHHHH
Q 046820           62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESES--NKSCIVDNAAVSVLAAAFESFSKT--CLDENVSVLEEILS  137 (350)
Q Consensus        62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~--nR~~i~~aGai~~Lv~lL~~~~~~--~~~~~~~~~e~Al~  137 (350)
                      .....++..+....      ...+.+..|+..-+.++.  -+.++ +.|++..|+.+|..+...  ..+.+...+.+.+.
T Consensus        66 ~~p~~~i~~L~~~~------~~~~~L~~L~v~Lrt~~~~Wv~~Fl-~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~  138 (187)
T PF06371_consen   66 SSPEWYIKKLKSRP------STSKILKSLRVSLRTNPISWVQEFL-ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLR  138 (187)
T ss_dssp             HHHHHHHHHHTTT--------HHHHHHHHHHHHHHS-HHHHHHH--HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHccC------ccHHHHHHHHHHhccCCchHHHHhc-cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHH
Confidence            34556777776532      122677777766665432  23333 568899999999753211  00123466777888


Q ss_pred             HHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 046820          138 TLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTEL  184 (350)
Q Consensus       138 ~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~L  184 (350)
                      +|..++........++..++.+..|+..|.+.+...|..+.-+|-.+
T Consensus       139 Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l  185 (187)
T PF06371_consen  139 CLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL  185 (187)
T ss_dssp             HHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            88855543333345667899999999999999999999988877655

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.73  E-value=40  Score=32.92  Aligned_cols=140  Identities=13%  Similarity=0.086  Sum_probs=84.1

Q ss_pred             chHHHHHHHHHHHhhCCCChhhHhhcc-cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHH
Q 046820          128 NVSVLEEILSTLILLFPLEGEALTHLG-SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEA  206 (350)
Q Consensus       128 ~~~~~e~Al~~L~~~Ls~~~e~k~~i~-~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~  206 (350)
                      ++.++..|+..|+ .|.-. ..+.... +...++.+..++..-..  -+.|+.+|-+++..   +..+..+-.  .++.-
T Consensus        16 sP~v~~~AV~~l~-~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~---~~l~~~ll~--~~~k~   86 (353)
T KOG2973|consen   16 SPPVRKAAVEHLL-GLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK---EELRKKLLQ--DLLKV   86 (353)
T ss_pred             ChHHHHHHHHHHh-hcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh---HHHHHHHHH--HHHHH
Confidence            3668888888888 56533 2222222 34467778887765333  45689999999965   355555523  48888


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcC-----CCChHHHHHHHhccCh---hHHHH
Q 046820          207 LFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDK-----PLTMPVVVKKILRVSE---LATEL  278 (350)
Q Consensus       207 LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~-----~~~v~~lv~~l~~~S~---~~~E~  278 (350)
                      ++.++-++.++               +.+.+..+|.||+.-+.+..++...     ..++.-+++..-+.+.   ..=+|
T Consensus        87 l~~~~~~p~~~---------------lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~y  151 (353)
T KOG2973|consen   87 LMDMLTDPQSP---------------LADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHY  151 (353)
T ss_pred             HHHHhcCcccc---------------hHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhH
Confidence            88888877443               2334444555555544444443321     1456666665554332   34578


Q ss_pred             HHHHHHHHccccc
Q 046820          279 SVSILWKLCMNEK  291 (350)
Q Consensus       279 Av~iL~~Lc~~~~  291 (350)
                      -+.++.+|.++..
T Consensus       152 lA~vf~nls~~~~  164 (353)
T KOG2973|consen  152 LAPVFANLSQFEA  164 (353)
T ss_pred             HHHHHHHHhhhhh
Confidence            8889999988753

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=80.45  E-value=14  Score=31.05  Aligned_cols=70  Identities=17%  Similarity=0.164  Sum_probs=51.7

Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC--CChHHHHHHHHHHH
Q 046820          157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP--ISPTATKAALVVIY  228 (350)
Q Consensus       157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~--~~~~a~k~Al~aL~  228 (350)
                      .+++.|-+=|+++++.....|..+|..+..... ..+...|++ ..++..|++++.+.  .+++-++-.+..+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg-~~f~~~i~s-~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~  108 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCG-KPFHLQVAD-KEFLLELVKIAKNSPKYDPKVREKALELIL  108 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC-hHHHHHHhh-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            367777777889999999999999999998754 457778866 68888899999863  34444343333333

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=80.34  E-value=72  Score=32.54  Aligned_cols=206  Identities=14%  Similarity=0.121  Sum_probs=122.1

Q ss_pred             CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhH-hhccc
Q 046820           78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEAL-THLGS  155 (350)
Q Consensus        78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k-~~i~~  155 (350)
                      .+.....+|++-|.+.-..++.-|..+++.|..+.++..|+.+.+.  ..+.++.=-...+|+ ++. ...+.+ +.+.+
T Consensus        44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~--~~~~d~~Fl~~RLLF-LlTa~~~~~~~~L~~e  120 (446)
T PF10165_consen   44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDS--SQPSDVEFLDSRLLF-LLTALRPDDRKKLIEE  120 (446)
T ss_pred             CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccccc--CCChhHHHHHHHHHH-HHhcCChhHHHHHHHH
Confidence            3556778999999999999999999999999999999999854221  012334444667777 454 344444 44445


Q ss_pred             CCcHHHHHHHHccC-----------------CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCC----
Q 046820          156 ASSMGCMIWFLNSG-----------------DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEP----  214 (350)
Q Consensus       156 ~~~l~~Lv~~L~~g-----------------s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~----  214 (350)
                      .+.++.|+..|..-                 ..+.=..+..++|++.....  ....  ..-.+.++.|+.+++.-    
T Consensus       121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~--~~~~--~~~~~~~~~l~~il~~~l~~~  196 (446)
T PF10165_consen  121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP--KSVP--EEFSPSIPHLVSILRRLLPPP  196 (446)
T ss_pred             hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC--cccc--hhhhHHHHHHHHHHHHHhccC
Confidence            56777777666431                 11222356788888864432  1110  01134445555444311    


Q ss_pred             ----CChHHHHHHHHHHHHhhhh--------------------H------------------------H---HHHHHHHH
Q 046820          215 ----ISPTATKAALVVIYHTIAS--------------------S------------------------A---SALSVLDG  243 (350)
Q Consensus       215 ----~~~~a~k~Al~aL~~L~~~--------------------~------------------------e---~aL~vL~~  243 (350)
                          .-..-...++.+|.|+...                    +                        +   --|.+|..
T Consensus       197 ~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~  276 (446)
T PF10165_consen  197 PSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTR  276 (446)
T ss_pred             CCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHH
Confidence                1123445667777777210                    0                        0   34566666


Q ss_pred             HhCC-HhhHHHhhc--------------CCCCh-HHHHHHHhccChhHHHHHHHHHHHHcccc
Q 046820          244 ICST-DCGRENAND--------------KPLTM-PVVVKKILRVSELATELSVSILWKLCMNE  290 (350)
Q Consensus       244 L~~~-~eGr~ai~~--------------~~~~v-~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~  290 (350)
                      ++.. .+-|..+..              ....+ .-|++.|....+.-++.+...||.||..+
T Consensus       277 ~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  277 LARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             HHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence            6665 344444432              12233 44566565555788999999999999854

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-04
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-04
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 54/375 (14%), Positives = 93/375 (24%), Gaps = 138/375 (36%)

Query: 28  LIEKDPVTTTPRNGITYDRVNILIE--NERIIPVCSVEVLEIN-----SKIKTACE---- 76
           ++ KD V+ T        R+   +    E ++     EVL IN     S IKT       
Sbjct: 55  IMSKDAVSGT-------LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 77  -------------------TQDQVGCKDLVAKIKEWAKESESNKSCIVDNAA---VSVLA 114
                               +  V       K+++   E    K+ ++D       + +A
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 115 AAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRR 174
                    CL   V                +               + W LN  + +  
Sbjct: 168 LD------VCLSYKV----------QCKMDFK---------------IFW-LNLKNCNSP 195

Query: 175 RNAVLLLTEL---VSSDSDQRK---VNVLSENEGAIEALFKLIEEPISPTATKAALVVIY 228
              + +L +L   +  +   R     N+          L +L++                
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--------- 246

Query: 229 HTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVK------KIL---RVSELATELS 279
                    L VL  + +                          KIL   R  ++   LS
Sbjct: 247 ---------LLVLLNVQNAK---------------AWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 280 VSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH--- 336
            +    + ++                   K L      C  R ++   EVL         
Sbjct: 283 AATTTHISLDHHSM---TLTPDEVKSLLLKYL-----DC--RPQDLPREVLTTNPRRLSI 332

Query: 337 -----RDRLECVDGW 346
                RD L   D W
Sbjct: 333 IAESIRDGLATWDNW 347

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 37/268 (13%), Positives = 72/268 (26%), Gaps = 47/268 (17%)

Query: 96  ESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGS 155
                   I  +  +  L     S          SVL   ++TL  L   +  A   +  
Sbjct: 222 HHREGLLAIFKSGGIPALVNMLGS-------PVDSVLFHAITTLHNLLLHQEGAKMAVRL 274

Query: 156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPI 215
           A  +  M+  LN  ++         L  L   + + + + +     G  +AL  ++    
Sbjct: 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL---ASGGPQALVNIMRTYT 331

Query: 216 SPTATKAALVVIY---------HTIASS------------------ASALSVLDGICSTD 248
                     V+            I  +                   + L  L  +    
Sbjct: 332 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391

Query: 249 CGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQ 308
             +E        +  +V+ +          +  IL  L  N   + K    +    G  +
Sbjct: 392 TKQEGMEG---LLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQV---GGIE 444

Query: 309 KLLVLLQVGCA-ERTKEKASEVLKLMNL 335
            L+  +      E   E A  +  L +L
Sbjct: 445 ALVRTVLRAGDREDITEPA--ICALRHL 470

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 4/134 (2%)

Query: 94  AKESESNKSCIVDNA-AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTH 152
           +     NK+ I     A++ L       S+T     +     IL  +  L     +    
Sbjct: 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258

Query: 153 LGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE 212
           L   + +  ++  L S  L+   NA   L  L + +   ++      + GA+  L  LI 
Sbjct: 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW---DMGAVSMLKNLIH 315

Query: 213 EPISPTATKAALVV 226
                 A  +A  +
Sbjct: 316 SKHKMIAMGSAAAL 329

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 4/131 (3%)

Query: 97  SESNKSCIVD-NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGS 155
              NK+ I   + A++ L       S+T     +     IL  +  L     +    L  
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377

Query: 156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPI 215
            + +  ++  L S  L+   NA   L  L + +   ++      + GA+  L  LI    
Sbjct: 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW---DMGAVSMLKNLIHSKH 434

Query: 216 SPTATKAALVV 226
              A  +A  +
Sbjct: 435 KMIAMGSAAAL 445

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.91
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.87
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.87
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.86
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.85
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.84
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.82
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.81
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.78
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.78
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.78
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.78
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.77
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.77
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.76
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.74
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.74
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.73
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.71
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.71
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.7
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.69
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.69
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.68
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.68
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.66
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.66
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.66
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.66
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.65
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.64
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.62
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.62
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.58
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.58
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.55
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.42
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.26
3grl_A	651	General vesicular transport factor P115; vesicle t	99.06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.49
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.28
3grl_A	651	General vesicular transport factor P115; vesicle t	98.23
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.98
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.95
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.75
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	97.68
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.67
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	97.61
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.61
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	97.56
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	97.56
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.52
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.52
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	97.26
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.17
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	97.09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.8
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	96.79
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.75
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	96.46
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	96.13
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	95.99
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	95.73
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	95.58
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	95.42
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	95.31
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	95.13
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	95.02
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	94.7
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	94.61
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	94.55
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	94.53
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	94.41
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	94.24
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	94.2
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.18
1qgr_A	876	Protein (importin beta subunit); transport recepto	94.15
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	93.82
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	93.31
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	93.23
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	92.45
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	92.08
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	90.16
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	89.53
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	86.2
1qgr_A	876	Protein (importin beta subunit); transport recepto	86.03
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	85.74
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	85.48

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.91  E-value=7.8e-23  Score=199.18  Aligned_cols=246  Identities=13%  Similarity=0.126  Sum_probs=204.6

Q ss_pred             hHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhc----cccccccchHHHHHHHHHHHhhCCCCh-hhHhhcc-
Q 046820           81 VGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESF----SKTCLDENVSVLEEILSTLILLFPLEG-EALTHLG-  154 (350)
Q Consensus        81 ~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~----~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~-  154 (350)
                      +.+++|+..|.+++.+ ++||.+|.+.|++++|+.+|.+-    .......+..++++|..+|. ||..++ ++|..+. 
T Consensus        47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~-nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT-NLTFGDVANKATLCS  124 (354)
T ss_dssp             GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH-HHTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHH-HHHcCCHHHHHHHHH
Confidence            5567899999999987 78999999999999999999521    00000123568999999999 898665 5887775 


Q ss_pred             cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh-h
Q 046820          155 SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA-S  233 (350)
Q Consensus       155 ~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~-~  233 (350)
                      ..|+|+.|+.+|++++.+.+++|+.+|.+|+...+ +.++..|.+ .|+|+.||++|....++...+.|+.+|+||+. .
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC-HHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC-HHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence            56789999999999999999999999999986422 478888866 79999999986544477888999999999975 2


Q ss_pred             --H------------------------------HHHHHHHHHHhC----CHhhHHHhhcCCCChHHHHHHHhccChhHHH
Q 046820          234 --S------------------------------ASALSVLDGICS----TDCGRENANDKPLTMPVVVKKILRVSELATE  277 (350)
Q Consensus       234 --~------------------------------e~aL~vL~~L~~----~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E  277 (350)
                        +                              +.|..+|.+|+.    ++++|..+. +.|+||.||+.|..++...++
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~  281 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVS  281 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHHHTTCSCHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HcCCHHHHHHHHcCCChHHHH
Confidence              1                              357888999984    899998885 789999999999999999999


Q ss_pred             HHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820          278 LSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH  336 (350)
Q Consensus       278 ~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~  336 (350)
                      +|+.+|+++|..+    .+..+.+++.|+++.|+.+|+++ +++.|+.|...|..|...
T Consensus       282 ~A~~aL~nLa~~~----~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          282 NACGTLWNLSARN----PKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHHHHHHTSSC----HHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCC----HHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence            9999999999743    45778888999999999988865 789999999999999874

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.87  E-value=3.6e-21  Score=193.35  Aligned_cols=244  Identities=13%  Similarity=0.131  Sum_probs=201.7

Q ss_pred             HHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhc----cccccccchHHHHHHHHHHHhhCCCCh-hhHhhcc-cC
Q 046820           83 CKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESF----SKTCLDENVSVLEEILSTLILLFPLEG-EALTHLG-SA  156 (350)
Q Consensus        83 ~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~----~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~-~~  156 (350)
                      +++|+..|.+++.+ ++||.+|.+.|++++|+.+|..-    .......+..++++|..+|. ||..++ ++|..+. ..
T Consensus       165 ~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~-nLa~~~~~~k~~i~~~~  242 (458)
T 3nmz_A          165 ICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT-NLTFGDVANKATLCSMK  242 (458)
T ss_dssp             THHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH-HHhCCCcccHHHHHHcC
Confidence            45899999999765 89999999999999999999521    00000123568999999999 888665 5777774 56


Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh-hH-
Q 046820          157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA-SS-  234 (350)
Q Consensus       157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~-~~-  234 (350)
                      |+|+.|+.+|++++.+.+++|+.+|.+|+...+ +.++..|.+ .|+|+.||++|....++...+.|+.+|+||+. .. 
T Consensus       243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~  320 (458)
T 3nmz_A          243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE  320 (458)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC-HHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-HHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHH
Confidence            789999999999999999999999999986422 478888866 89999999987554477889999999999975 21 


Q ss_pred             -------------------------------HHHHHHHHHHh----CCHhhHHHhhcCCCChHHHHHHHhccChhHHHHH
Q 046820          235 -------------------------------ASALSVLDGIC----STDCGRENANDKPLTMPVVVKKILRVSELATELS  279 (350)
Q Consensus       235 -------------------------------e~aL~vL~~L~----~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~A  279 (350)
                                                     +.|..+|.+|+    ..++.+..|. +.|+||.||++|..++...++.|
T Consensus       321 nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~G~i~~Lv~LL~~~~~~v~~~A  399 (458)
T 3nmz_A          321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVSNA  399 (458)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHSSCSCHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HcccHHHHHHHHcCCChHHHHHH
Confidence                                           24788999998    5899999886 68899999999998999999999


Q ss_pred             HHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820          280 VSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH  336 (350)
Q Consensus       280 v~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~  336 (350)
                      +.+|++++..+    .+....+++.|+++.|+.+|+++ +++.|+.|...|+.|...
T Consensus       400 ~~aL~nLa~~~----~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          400 CGTLWNLSARN----PKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHHHHHSSC----HHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCC----HHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence            99999999743    45788888999999999988865 789999999999998864

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.87  E-value=8.7e-21  Score=195.32  Aligned_cols=258  Identities=14%  Similarity=0.102  Sum_probs=205.8

Q ss_pred             CCcchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHH
Q 046820           59 VCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILST  138 (350)
Q Consensus        59 ~~~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~  138 (350)
                      +....+..+|..|.+    ++++.+..|+..|+.++..++.||..|++.|+||.|+.+|.   .+    +..++++|+.+
T Consensus        45 ~~~~~i~~LV~~L~s----~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~---s~----~~~vq~~Aa~A  113 (584)
T 3l6x_A           45 WRQPELPEVIAMLGF----RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD---HP----KKEVHLGACGA  113 (584)
T ss_dssp             CCCCCHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG---CS----SHHHHHHHHHH
T ss_pred             cccccHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC---CC----CHHHHHHHHHH
Confidence            344578899999976    46788889999999999999999999999999999999997   22    47899999999


Q ss_pred             HHhhCCCC--hhhHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc---
Q 046820          139 LILLFPLE--GEALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE---  212 (350)
Q Consensus       139 L~~~Ls~~--~e~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~---  212 (350)
                      |. ||+..  +++|..|.+.|+|+.|+.+|+++ +.+.+++|+.+|.+|+..   ++++..|.  .++++.||++|.   
T Consensus       114 L~-nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~---~~~k~~I~--~~alp~Lv~LL~~p~  187 (584)
T 3l6x_A          114 LK-NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH---DSIKMEIV--DHALHALTDEVIIPH  187 (584)
T ss_dssp             HH-HHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS---GGGHHHHH--HHTHHHHHHHTHHHH
T ss_pred             HH-HHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC---chhhHHHH--hccHHHHHHHHhccc
Confidence            99 99974  69999999999999999999984 789999999999999975   47888885  467999999872   


Q ss_pred             --------------CCCChHHHHHHHHHHHHhhhhH-----------------------------------HHHHHHHHH
Q 046820          213 --------------EPISPTATKAALVVIYHTIASS-----------------------------------ASALSVLDG  243 (350)
Q Consensus       213 --------------~~~~~~a~k~Al~aL~~L~~~~-----------------------------------e~aL~vL~~  243 (350)
                                    +..++...+.|..+|+||+..+                                   |.|+.+|.+
T Consensus       188 sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~N  267 (584)
T 3l6x_A          188 SGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN  267 (584)
T ss_dssp             HCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence                          1124577888999999996421                                   358899999


Q ss_pred             HhCCHh--------------------------hHHHhhcCCCChHHHHHHHhc-cChhHHHHHHHHHHHHccccccchHH
Q 046820          244 ICSTDC--------------------------GRENANDKPLTMPVVVKKILR-VSELATELSVSILWKLCMNEKREEKT  296 (350)
Q Consensus       244 L~~~~e--------------------------Gr~ai~~~~~~v~~lv~~l~~-~S~~~~E~Av~iL~~Lc~~~~~~~~~  296 (350)
                      ||...+                          |.+.+ -++++|+.++.+|.. .++..+|.|+.+|++||...... ..
T Consensus       268 Ls~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L-~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~-~~  345 (584)
T 3l6x_A          268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELL-FQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY-GR  345 (584)
T ss_dssp             HHTTHHHHSTTCCC--------------CCCCGGGGG-GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH-HH
T ss_pred             hhccccccccchhhhhhhcccccccccccCchhHHHH-hcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc-cH
Confidence            987532                          22222 244556778888854 46888999999999999854211 11


Q ss_pred             HHHHHH-hhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820          297 AFVEAL-QVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH  336 (350)
Q Consensus       297 ~~~~~~-~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~  336 (350)
                      ..+.++ ++|+++.|+.+|+.+ ++..++.|..+|+.|...
T Consensus       346 ~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~  385 (584)
T 3l6x_A          346 YIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVD  385 (584)
T ss_dssp             HHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC
Confidence            223344 689999999999876 789999999999999874

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.86  E-value=4.5e-20  Score=184.71  Aligned_cols=254  Identities=13%  Similarity=0.077  Sum_probs=199.2

Q ss_pred             hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820           63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL  142 (350)
Q Consensus        63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~  142 (350)
                      .+..+++.|.+    ++++.+..|+..|+.++..++.+|..+.++|+||.|+.+|.   ++    +..+++.|..+|. |
T Consensus         3 ~l~~lv~~L~s----~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~---s~----~~~~~~~A~~aL~-n   70 (457)
T 1xm9_A            3 TIPKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR---SP----NQNVQQAAAGALR-N   70 (457)
T ss_dssp             CHHHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT---SS----CHHHHHHHHHHHH-H
T ss_pred             CHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc---CC----CHHHHHHHHHHHH-H
Confidence            46678888876    36788999999999999988888999999999999999996   22    4778999999999 8


Q ss_pred             CCCC-hhhHhhcccCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc--------
Q 046820          143 FPLE-GEALTHLGSASSMGCMIWFLN-SGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE--------  212 (350)
Q Consensus       143 Ls~~-~e~k~~i~~~~~l~~Lv~~L~-~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~--------  212 (350)
                      |+.+ +++|..|.+.|+++.|+.+|+ +++.+.+++|+.+|.+|+.. +  +++..|.+  |+++.|+++|.        
T Consensus        71 La~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~--~~~~~i~~--g~i~~Lv~ll~~~~s~~~~  145 (457)
T 1xm9_A           71 LVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-D--ELKEELIA--DALPVLADRVIIPFSGWCD  145 (457)
T ss_dssp             HHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-S--STHHHHHH--HHHHHHHHHTTHHHHTCC-
T ss_pred             HhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-H--HhHHHHHh--ccHHHHHHHHhcccccccc
Confidence            8866 799999999999999999999 88999999999999999976 3  68887744  99999999993        


Q ss_pred             CC-------CChHHHHHHHHHHHHhhhhH----------------------------------HHHHHHHHHHhCC----
Q 046820          213 EP-------ISPTATKAALVVIYHTIASS----------------------------------ASALSVLDGICST----  247 (350)
Q Consensus       213 ~~-------~~~~a~k~Al~aL~~L~~~~----------------------------------e~aL~vL~~L~~~----  247 (350)
                      ++       .++...+.|..+|+|||...                                  +.|+.+|.+|+..    
T Consensus       146 ~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~  225 (457)
T 1xm9_A          146 GNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE  225 (457)
T ss_dssp             --------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH
T ss_pred             CccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhcc
Confidence            22       12344568999999997531                                  2345666666521    


Q ss_pred             -----------------------------------------------HhhHHHhhcCCCChHHHHHHHhcc-ChhHHHHH
Q 046820          248 -----------------------------------------------DCGRENANDKPLTMPVVVKKILRV-SELATELS  279 (350)
Q Consensus       248 -----------------------------------------------~eGr~ai~~~~~~v~~lv~~l~~~-S~~~~E~A  279 (350)
                                                                     ++|.+.+ -+.++|+.++..|... ++..+|.|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~l~~L~~lL~~~~~~~~~e~a  304 (457)
T 1xm9_A          226 VPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL-YHSDAIRTYLNLMGKSKKDATLEAC  304 (457)
T ss_dssp             SCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG-GSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             CcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH-hCcchHHHHHHHHhhcCCHHHHHHH
Confidence                                                           1222333 3566788888888765 57889999


Q ss_pred             HHHHHHHccccccchHHHHHHHH-hhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          280 VSILWKLCMNEKREEKTAFVEAL-QVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       280 v~iL~~Lc~~~~~~~~~~~~~~~-~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      +.+|+++|...........+.++ +.|+++.|+.+|+.+ +++.|+.|..+|+.|..
T Consensus       305 ~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~  360 (457)
T 1xm9_A          305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSR  360 (457)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhc
Confidence            99999999865321112324455 689999999998866 78999999999999976

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.85  E-value=8.1e-21  Score=174.78  Aligned_cols=198  Identities=15%  Similarity=0.125  Sum_probs=161.7

Q ss_pred             cchHHHHHHHhHhhhccCCh--hHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHH
Q 046820           61 SVEVLEINSKIKTACETQDQ--VGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILST  138 (350)
Q Consensus        61 ~~~v~~lv~~l~~~~~~~~~--~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~  138 (350)
                      ...+..+|+.|.+.    |+  +.+..|+..|+.+++.++.||..|.+.|+||.|+.+|.   .+    +.+++++|+.+
T Consensus         7 ~~~i~~lV~lL~s~----~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~---s~----~~~vq~~Aa~a   75 (233)
T 3tt9_A            7 EMTLERAVSMLEAD----HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK---VQ----NEDVQRAVCGA   75 (233)
T ss_dssp             CCCHHHHHHTCCSS----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG---CC----CHHHHHHHHHH
T ss_pred             hccHHHHHHHhCCC----CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc---CC----CHHHHHHHHHH
Confidence            34677888888764    44  56778999999999999999999999999999999997   22    37899999999


Q ss_pred             HHhhCCCC-hhhHhhcccCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcC---
Q 046820          139 LILLFPLE-GEALTHLGSASSMGCMIWFLN-SGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEE---  213 (350)
Q Consensus       139 L~~~Ls~~-~e~k~~i~~~~~l~~Lv~~L~-~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~---  213 (350)
                      |. ||+.+ +++|..|.+.|+|+.|+++|+ +++.+.+++|+.+|++||..   +.+|..|.+  ++|++|++++..   
T Consensus        76 L~-nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~---~~~k~~i~~--~~i~~Lv~ll~~p~s  149 (233)
T 3tt9_A           76 LR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN---DKLKNLMIT--EALLTLTENIIIPFS  149 (233)
T ss_dssp             HH-HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS---GGGHHHHHH--HHHHHHCCCCCHHHH
T ss_pred             HH-HHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC---hhhHHHHHh--ccHHHHHHHHhcccc
Confidence            99 99874 689999999999999999998 57999999999999999976   378888844  679999997741   


Q ss_pred             C------------CChHHHHHHHHHHHHhhhhHHHHHHHHHHHhC-CHhhHHHhhcCCCChHHHHHHHhcc------Chh
Q 046820          214 P------------ISPTATKAALVVIYHTIASSASALSVLDGICS-TDCGRENANDKPLTMPVVVKKILRV------SEL  274 (350)
Q Consensus       214 ~------------~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~-~~eGr~ai~~~~~~v~~lv~~l~~~------S~~  274 (350)
                      +            .++....              -|..+|.+|+. .+++|.+|...+|.|++||..+...      ++.
T Consensus       150 G~~~~~~~~~~~~~~~~v~~--------------na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k  215 (233)
T 3tt9_A          150 GWPEGDYPKANGLLDFDIFY--------------NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDK  215 (233)
T ss_dssp             CCCGGGCCCCCTTCCHHHHH--------------HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCH
T ss_pred             CCcccccccccccchHHHHH--------------HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhH
Confidence            1            1223333              44555566655 5799999988888999999998753      457


Q ss_pred             HHHHHHHHHHHHccc
Q 046820          275 ATELSVSILWKLCMN  289 (350)
Q Consensus       275 ~~E~Av~iL~~Lc~~  289 (350)
                      .+|+||.+|++||..
T Consensus       216 ~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          216 ATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            899999999999974

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.84  E-value=6.7e-19  Score=158.71  Aligned_cols=240  Identities=18%  Similarity=0.210  Sum_probs=197.7

Q ss_pred             hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820           63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL  142 (350)
Q Consensus        63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~  142 (350)
                      .+..++..+.+    .+++.+..|+..|..++..++.++..+.+.|++|.|+.+|.   ++    +.++++.|+.+|. +
T Consensus         3 ~i~~L~~~L~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~----~~~v~~~a~~~L~-~   70 (252)
T 4hxt_A            3 DVEKLVKLLTS----TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT---ST----DSEVQKEAARALA-N   70 (252)
T ss_dssp             HHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CS----CHHHHHHHHHHHH-H
T ss_pred             cHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh---CC----CHHHHHHHHHHHH-H
Confidence            35567777765    35678889999999999999899999999999999999996   22    3778999999999 7


Q ss_pred             CCCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820          143 FPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK  221 (350)
Q Consensus       143 Ls~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k  221 (350)
                      ++.+ ++++..+.+.+.++.++.+|++++.+.+.+|+.+|.+|+...  +.++..+.. .|+++.|+++++++ ++....
T Consensus        71 l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~-~~~i~~L~~~l~~~-~~~~~~  146 (252)
T 4hxt_A           71 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEAIKAIVD-AGGVEVLVKLLTST-DSEVQK  146 (252)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHH-TTHHHHHHHHTTCS-CHHHHH
T ss_pred             HHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHH-CCCHHHHHHHHcCC-CHHHHH
Confidence            8766 688888888999999999999999999999999999999654  477777756 89999999999976 555555


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhCCHhh-HHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHH
Q 046820          222 AALVVIYHTIASSASALSVLDGICSTDCG-RENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVE  300 (350)
Q Consensus       222 ~Al~aL~~L~~~~e~aL~vL~~L~~~~eG-r~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~  300 (350)
                      .|+.+|.+++              ...+. +..+ .+.++++.+++.+...++..++.|+.+|.++|..+    +.....
T Consensus       147 ~a~~~L~~l~--------------~~~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~~  207 (252)
T 4hxt_A          147 EAARALANIA--------------SGPDEAIKAI-VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP----TSAIKA  207 (252)
T ss_dssp             HHHHHHHHHT--------------TSCHHHHHHH-HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB----HHHHHH
T ss_pred             HHHHHHHHHH--------------cCCHHHHHHH-HHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC----HHHHHH
Confidence            5555555554              43333 3445 46899999999998888899999999999999853    457778


Q ss_pred             HHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccC
Q 046820          301 ALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRD  338 (350)
Q Consensus       301 ~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~  338 (350)
                      +.+.|+++.|+.+++.+ .+..|+.|...|..+.....
T Consensus       208 l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          208 IVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHTCB
T ss_pred             HHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCCC
Confidence            88999999999988854 78999999999999988554

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.82  E-value=7e-19  Score=159.85  Aligned_cols=237  Identities=16%  Similarity=0.229  Sum_probs=192.3

Q ss_pred             chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820           62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL  141 (350)
Q Consensus        62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~  141 (350)
                      .....++..|.+.    |++.+..|+..|+.+...++.++..+.+.|++|.|+.+|.   ++    +..+++.|+.+|. 
T Consensus        12 ~~~~~~~~~L~s~----~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~---~~----~~~v~~~a~~~L~-   79 (252)
T 4db8_A           12 SELPQMTQQLNSD----DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS---SP----NEQILQEALWALS-   79 (252)
T ss_dssp             CSHHHHHHHHHSS----CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG---CS----CHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc---CC----CHHHHHHHHHHHH-
Confidence            4566788888774    5688999999998777667889999999999999999996   22    3678999999999 


Q ss_pred             hCCC-ChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHH-hhhhchhhHHHHHHHHhcCCCChHH
Q 046820          142 LFPL-EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKV-NVLSENEGAIEALFKLIEEPISPTA  219 (350)
Q Consensus       142 ~Ls~-~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~-~~Ig~~~g~i~~LV~lL~~~~~~~a  219 (350)
                      ++.. +++++..+.+.|.++.|+.+|++++.+.|.+|+.+|.+|+...   ..+ ..+.. .|+++.|+++|+++ ++..
T Consensus        80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~-~~~i~~L~~lL~~~-~~~v  154 (252)
T 4db8_A           80 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---NEQIQAVID-AGALPALVQLLSSP-NEQI  154 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHH-TTHHHHHHHGGGCS-CHHH
T ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC---chHHHHHHH-CCCHHHHHHHHhCC-CHHH
Confidence            7876 4588888888899999999999999999999999999998764   444 55545 79999999999876 6666


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHH
Q 046820          220 TKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFV  299 (350)
Q Consensus       220 ~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~  299 (350)
                      ...|+.+|.+|+..             .++.+..+ .+.++++.+++.+...++..++.|+.+|.++|..+    +....
T Consensus       155 ~~~a~~~L~~l~~~-------------~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~  216 (252)
T 4db8_A          155 LQEALWALSNIASG-------------GNEQIQAV-IDAGALPALVQLLSSPNEQILQEALWALSNIASGG----NEQKQ  216 (252)
T ss_dssp             HHHHHHHHHHHTTS-------------CHHHHHHH-HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC----HHHHH
T ss_pred             HHHHHHHHHHHHcC-------------ChHHHHHH-HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC----HHHHH
Confidence            66666666665532             23444444 46899999999998888899999999999999754    45677


Q ss_pred             HHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820          300 EALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN  334 (350)
Q Consensus       300 ~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~  334 (350)
                      .+.+.|+++.|+.+++.+ .+..|+.|...|..|.
T Consensus       217 ~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          217 AVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHTTC
T ss_pred             HHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHHHh
Confidence            788999999999888865 7899999998887653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.81  E-value=1.9e-18  Score=174.91  Aligned_cols=255  Identities=12%  Similarity=0.089  Sum_probs=206.5

Q ss_pred             chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHh-cCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820           62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAK-ESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI  140 (350)
Q Consensus        62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak-~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~  140 (350)
                      ..+.++|+.+.+    +|.+.+.+|+..+|++.. +...-...|.++|+||.|+.+|..  .+    ++.+|.+|..+|.
T Consensus        57 ~~i~~~v~~l~s----~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~--~~----~~~lq~~Aa~aL~  126 (510)
T 3ul1_B           57 WSVEDIVKGINS----NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TD----CSPIQFESAWALT  126 (510)
T ss_dssp             CCHHHHHHHHTS----SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC--TT----CHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhcC----CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC--CC----CHHHHHHHHHHHH
Confidence            358899999987    478999999999998654 333334678899999999999962  22    4678999999999


Q ss_pred             hhCC-CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCC----
Q 046820          141 LLFP-LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPI----  215 (350)
Q Consensus       141 ~~Ls-~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~----  215 (350)
                       |++ -+++++..+.+.|+++.|+.+|++++.+.|++|+.+|.+|+.+.  +.++..+-. .|+++.|+.+|.++.    
T Consensus       127 -nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~  202 (510)
T 3ul1_B          127 -NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIK-HGAIDPLLALLAVPDLSTL  202 (510)
T ss_dssp             -HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTCHHHHHHHTCSSCGGGS
T ss_pred             -HHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHH-cCChHHHHHHHHhccchhh
Confidence             885 45588888899999999999999999999999999999999764  477877745 899999999998652    


Q ss_pred             ChHHHHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHH
Q 046820          216 SPTATKAALVVIYHTIASS----------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKK  267 (350)
Q Consensus       216 ~~~a~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~  267 (350)
                      .....+.+..+|.+++...                            ..++.+|.+|+.....+..+....|+++.|+++
T Consensus       203 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l  282 (510)
T 3ul1_B          203 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL  282 (510)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhh
Confidence            2235677888888886421                            368889999998766666665689999999999


Q ss_pred             HhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          268 ILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       268 l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      +...+...++.|+.+|++++..+    +.....+++.|+++.|..+|+.. .+..|+.|...|..+..
T Consensus       283 L~~~~~~v~~~al~aL~nl~~~~----~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a  345 (510)
T 3ul1_B          283 LGATELPIVTPALRAIGNIVTGT----DEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA  345 (510)
T ss_dssp             HTCSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTT
T ss_pred             hcCCChhhhhHHHHHHHHhhcCC----HHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence            98888899999999999999854    45777788999999988888754 68899999888887754

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.78  E-value=1.9e-17  Score=176.00  Aligned_cols=252  Identities=10%  Similarity=0.048  Sum_probs=205.4

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcc-----------------------------cc---chhhccCchH
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESES-----------------------------NK---SCIVDNAAVS  111 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~-----------------------------nR---~~i~~aGai~  111 (350)
                      +..|+.-+++    ++...+..|+..|.+++..++.                             ++   ..+.++|++|
T Consensus       423 Ip~LV~LL~s----~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp  498 (810)
T 3now_A          423 IHALMDLARG----GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT  498 (810)
T ss_dssp             HHHHHHHHHT----TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHhCC----CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence            4556666654    4567788999999999986532                             23   5788999999


Q ss_pred             HHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCch
Q 046820          112 VLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQ  191 (350)
Q Consensus       112 ~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~  191 (350)
                      .|+.+|.   ++    ++.++++|+.+|. |++.+++++..+.+.|++++|+.+|++|+...|.+|+.+|.+|+...+ +
T Consensus       499 ~LV~LL~---s~----s~~vqe~Aa~aL~-NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~-p  569 (810)
T 3now_A          499 ALCALAK---TE----SHNSQELIARVLN-AVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN-P  569 (810)
T ss_dssp             HHHHHHT---CC----CHHHHHHHHHHHH-HHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC-H
T ss_pred             HHHHHHc---CC----CHHHHHHHHHHHH-HHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC-h
Confidence            9999997   22    3779999999999 898777899989899999999999999999999999999999986532 2


Q ss_pred             hHHhhhh--chhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH----------------------------HHHHHHH
Q 046820          192 RKVNVLS--ENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS----------------------------ASALSVL  241 (350)
Q Consensus       192 ~~~~~Ig--~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~----------------------------e~aL~vL  241 (350)
                      .  ..++  ...|++++|+.+|..+.+.....+|+.+|.||+..+                            +.|+.+|
T Consensus       570 ~--~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L  647 (810)
T 3now_A          570 E--VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL  647 (810)
T ss_dssp             H--HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred             h--hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            2  2221  125799999999986545455678999999997531                            4799999


Q ss_pred             HHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHh-hchHHHHHHHHHhcCch
Q 046820          242 DGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQ-VGAFQKLLVLLQVGCAE  320 (350)
Q Consensus       242 ~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~-~G~v~~LL~llq~~~t~  320 (350)
                      .+|+.+++.+..+....++++.|+.++...+...++.|+.+|++++..+    +...+.+++ .|+++.|+.+++.+ .+
T Consensus       648 ~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s----~~~~~~ii~~~g~I~~Lv~LL~s~-d~  722 (810)
T 3now_A          648 CNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS----VKCCEKILAIASWLDILHTLIANP-SP  722 (810)
T ss_dssp             HHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC----HHHHHHHHTSTTHHHHHHHHHTCS-SH
T ss_pred             HHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC----HHHHHHHHHHcCCHHHHHHHHCCC-CH
Confidence            9999999999998744789999999887777889999999999999853    346777787 89999999999865 78


Q ss_pred             HHHHHHHHHHHHHHh
Q 046820          321 RTKEKASEVLKLMNL  335 (350)
Q Consensus       321 ~ak~kA~~LLk~l~~  335 (350)
                      ..|+.|...|..+-.
T Consensus       723 ~vq~~A~~aL~NL~~  737 (810)
T 3now_A          723 AVQHRGIVIILNMIN  737 (810)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998877754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.78  E-value=7.7e-18  Score=173.41  Aligned_cols=234  Identities=13%  Similarity=0.122  Sum_probs=185.9

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhc-CccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKE-SESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL  142 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~-s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~  142 (350)
                      |..||+-|.+    ++...+..|+..|++|+.. ++.||..|+++|+||.|+.+|.+  ..    +.+++++|..+|. +
T Consensus        92 Ip~LV~LL~s----~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s--~~----~~~~~e~aa~aL~-n  160 (584)
T 3l6x_A           92 IPVLVGLLDH----PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK--AR----DMDLTEVITGTLW-N  160 (584)
T ss_dssp             HHHHHHGGGC----SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHH--CC----SHHHHHHHHHHHH-H
T ss_pred             cHHHHHHHCC----CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcC--CC----CHHHHHHHHHHHH-H
Confidence            4455655554    4678899999999999985 78999999999999999999972  12    3678999999998 8


Q ss_pred             CCCChhhHhhcccCCcHHHHHHHHc---c---------------CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHH
Q 046820          143 FPLEGEALTHLGSASSMGCMIWFLN---S---------------GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAI  204 (350)
Q Consensus       143 Ls~~~e~k~~i~~~~~l~~Lv~~L~---~---------------gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i  204 (350)
                      |+.++++|..|.+ ++++.|+.+|.   +               .+.+.+++|+.+|++|++..  ++++..|.+..|+|
T Consensus       161 LS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~--~~~R~~i~~~~Gli  237 (584)
T 3l6x_A          161 LSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSER--SEARRKLRECDGLV  237 (584)
T ss_dssp             HTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSC--HHHHHHHHHSTTHH
T ss_pred             HhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCCcH
Confidence            9988899988875 57999999872   1               14688999999999999764  46677776768999


Q ss_pred             HHHHHHhcC-----CCChHHHHHHHHHHHHhhhh----------------------------------------------
Q 046820          205 EALFKLIEE-----PISPTATKAALVVIYHTIAS----------------------------------------------  233 (350)
Q Consensus       205 ~~LV~lL~~-----~~~~~a~k~Al~aL~~L~~~----------------------------------------------  233 (350)
                      +.||.+|++     ..+...++.|+.+|.|||..                                              
T Consensus       238 ~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL  317 (584)
T 3l6x_A          238 DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL  317 (584)
T ss_dssp             HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHH
Confidence            999999974     23567889999999887521                                              


Q ss_pred             --------HHHHHHHHHHHhCCH----hhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHH
Q 046820          234 --------SASALSVLDGICSTD----CGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEA  301 (350)
Q Consensus       234 --------~e~aL~vL~~L~~~~----eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~  301 (350)
                              .|.|..+|.+||.+.    +.-..++.+.+++|.||++|...++..++.|+.+|.+|+....+      ++.
T Consensus       318 ~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~------~~~  391 (584)
T 3l6x_A          318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN------KEL  391 (584)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC------HHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH------HHH
Confidence                    157889999998752    22223446788899999999889999999999999999986532      234


Q ss_pred             HhhchHHHHHHHHHhc
Q 046820          302 LQVGAFQKLLVLLQVG  317 (350)
Q Consensus       302 ~~~G~v~~LL~llq~~  317 (350)
                      +..|+++.|+.+|..+
T Consensus       392 I~~g~ip~LV~LL~~~  407 (584)
T 3l6x_A          392 IGKHAIPNLVKNLPGG  407 (584)
T ss_dssp             HHHHHHHHHHHTSSSS
T ss_pred             HHhCCHHHHHHHhcCC
Confidence            4789999999888754

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.78  E-value=8.3e-18  Score=168.24  Aligned_cols=256  Identities=11%  Similarity=0.116  Sum_probs=187.0

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +..+++-|.+    +++..+..|+..|++|+..+++||..|+++|+||.|+.+|..  ++    +.+++++|+.+|. ||
T Consensus        46 i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~--~~----~~~~~~~a~~aL~-nL  114 (457)
T 1xm9_A           46 ICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR--TG----NAEIQKQLTGLLW-NL  114 (457)
T ss_dssp             HHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT--CC----CHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh--CC----CHHHHHHHHHHHH-HH
Confidence            5566666664    467888999999999999889999999999999999999961  12    3679999999999 89


Q ss_pred             CCChhhHhhcccCCcHHHHHHHH--------ccCCHHHHH--------HHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820          144 PLEGEALTHLGSASSMGCMIWFL--------NSGDLSRRR--------NAVLLLTELVSSDSDQRKVNVLSENEGAIEAL  207 (350)
Q Consensus       144 s~~~e~k~~i~~~~~l~~Lv~~L--------~~gs~~~r~--------~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L  207 (350)
                      +.++++|..|.+ |+++.|+.+|        ++++.+.|+        +|+.+|.+|+..   ++++..|.+..|+++.|
T Consensus       115 a~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~---~~~~~~i~~~~g~i~~L  190 (457)
T 1xm9_A          115 SSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA---DAGRQTMRNYSGLIDSL  190 (457)
T ss_dssp             HTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS---HHHHHHHTTSTTHHHHH
T ss_pred             hcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC---HHHHHHHHHcCCCHHHH
Confidence            877888887778 9999999999        333444444        999999999965   47888885534999999


Q ss_pred             HHHhcCC-----CChHHHHHHHHHHHHhhh--------------------------------------------------
Q 046820          208 FKLIEEP-----ISPTATKAALVVIYHTIA--------------------------------------------------  232 (350)
Q Consensus       208 V~lL~~~-----~~~~a~k~Al~aL~~L~~--------------------------------------------------  232 (350)
                      +.+|+++     .+.+.+..|+.+|.||+.                                                  
T Consensus       191 v~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (457)
T 1xm9_A          191 MAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEE  270 (457)
T ss_dssp             HHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCC
T ss_pred             HHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccc
Confidence            9999852     234567777777777641                                                  


Q ss_pred             -----------------------------hHHHHHHHHHHHhCCHh-----hHHHhhcCCCChHHHHHHHhccChhHHHH
Q 046820          233 -----------------------------SSASALSVLDGICSTDC-----GRENANDKPLTMPVVVKKILRVSELATEL  278 (350)
Q Consensus       233 -----------------------------~~e~aL~vL~~L~~~~e-----Gr~ai~~~~~~v~~lv~~l~~~S~~~~E~  278 (350)
                                                   ..|.|+.+|.+||....     -...+....+++|.|++++..++...+..
T Consensus       271 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~  350 (457)
T 1xm9_A          271 TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRS  350 (457)
T ss_dssp             SSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHH
T ss_pred             cCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHH
Confidence                                         01457899999987531     11234457899999999998888888888


Q ss_pred             HHHHHHHHccccccc------------------------------------------hHHHHHHHHhhchHHHHHHHHHh
Q 046820          279 SVSILWKLCMNEKRE------------------------------------------EKTAFVEALQVGAFQKLLVLLQV  316 (350)
Q Consensus       279 Av~iL~~Lc~~~~~~------------------------------------------~~~~~~~~~~~G~v~~LL~llq~  316 (350)
                      |+.+|.+++......                                          +......+.+.|++++|..++.+
T Consensus       351 A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~  430 (457)
T 1xm9_A          351 GASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS  430 (457)
T ss_dssp             HHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcC
Confidence            888888876543110                                          01223334467888888876665


Q ss_pred             cCchHHHHHHHHHHHHHH
Q 046820          317 GCAERTKEKASEVLKLMN  334 (350)
Q Consensus       317 ~~t~~ak~kA~~LLk~l~  334 (350)
                      +-+++++++|..+|..+.
T Consensus       431 ~~~~~i~~~A~~~L~~~~  448 (457)
T 1xm9_A          431 SASPKAAEAARLLLSDMW  448 (457)
T ss_dssp             TTCHHHHHHHHHHHHTTS
T ss_pred             CCcHHHHHHHHHHHHHHH
Confidence            436888888888776443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.78  E-value=3.5e-18  Score=166.32  Aligned_cols=201  Identities=11%  Similarity=0.058  Sum_probs=170.9

Q ss_pred             hhHHHHHHHHHHHHHhcCccccchhhc-cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCC--hhhHhhcccC
Q 046820           80 QVGCKDLVAKIKEWAKESESNKSCIVD-NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLE--GEALTHLGSA  156 (350)
Q Consensus        80 ~~~~~~Al~~L~~Lak~s~~nR~~i~~-aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~--~e~k~~i~~~  156 (350)
                      +..+..|+..|.+|++.++.+|..|.. .|+||.|+.+|.   .+    +.+++++|..+|. ||+..  +++|..|.+.
T Consensus        98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~---s~----~~~v~~~A~~aL~-nLs~~~~~~~k~~i~~~  169 (354)
T 3nmw_A           98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK---SE----SEDLQQVIASVLR-NLSWRADVNSKKTLREV  169 (354)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG---CS----CHHHHHHHHHHHH-HHHTTCCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC---CC----CHHHHHHHHHHHH-HHhccCCHHHHHHHHHC
Confidence            456788999999999998889999864 588999999996   22    3779999999999 89864  5789999899


Q ss_pred             CcHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh---HHHHHHHHHHHHhhh
Q 046820          157 SSMGCMIWFL-NSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP---TATKAALVVIYHTIA  232 (350)
Q Consensus       157 ~~l~~Lv~~L-~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~---~a~k~Al~aL~~L~~  232 (350)
                      |+++.|+.+| ++++.+.+++|+.+|.+|+...  ++++..|....|+|+.||++|+++.+.   ..++.|..+|.||+.
T Consensus       170 G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~--~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~  247 (354)
T 3nmw_A          170 GSVKALMECALEVKKESTLKSVLSALWNLSAHC--TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS  247 (354)
T ss_dssp             THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC--hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHh
Confidence            9999999975 6678999999999999999743  377888864589999999999876332   478899999999984


Q ss_pred             ----hH---------------------------HHHHHHHHHHh-CCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHH
Q 046820          233 ----SS---------------------------ASALSVLDGIC-STDCGRENANDKPLTMPVVVKKILRVSELATELSV  280 (350)
Q Consensus       233 ----~~---------------------------e~aL~vL~~L~-~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av  280 (350)
                          ..                           +.|+.+|.+|+ ..++.+..|. +.|+||+|++++...++..++.|+
T Consensus       248 ~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~-~~G~i~~Lv~LL~s~~~~i~~~A~  326 (354)
T 3nmw_A          248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW-DMGAVSMLKNLIHSKHKMIAMGSA  326 (354)
T ss_dssp             HHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH-HTTHHHHHHTTTTCSSHHHHHHHH
T ss_pred             hccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHH
Confidence                21                           47999999999 5789999985 789999999988888899999999


Q ss_pred             HHHHHHccccc
Q 046820          281 SILWKLCMNEK  291 (350)
Q Consensus       281 ~iL~~Lc~~~~  291 (350)
                      .+|++|+.+.+
T Consensus       327 ~aL~nL~~~~~  337 (354)
T 3nmw_A          327 AALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCH
Confidence            99999999764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.77  E-value=7.1e-17  Score=162.66  Aligned_cols=257  Identities=12%  Similarity=0.074  Sum_probs=213.5

Q ss_pred             cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCc-cccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHH
Q 046820           61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESE-SNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTL  139 (350)
Q Consensus        61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~-~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L  139 (350)
                      ...+..++..+.+    ++++.+..|+..|+.++.... .++..+.+.|++|.|+.+|.   .+   .+..+++.|+.+|
T Consensus        73 ~~~l~~lv~~L~s----~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~---~~---~~~~v~~~A~~~L  142 (528)
T 4b8j_A           73 LESLPAMIGGVYS----DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT---RE---DFPQLQFEAAWAL  142 (528)
T ss_dssp             --CHHHHHHHHTS----SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT---CT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC---CC---CCHHHHHHHHHHH
Confidence            3457788888865    467888999999999977654 67888999999999999996   22   1267899999999


Q ss_pred             HhhCCCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChH
Q 046820          140 ILLFPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPT  218 (350)
Q Consensus       140 ~~~Ls~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~  218 (350)
                      . ++..+ ++++..+...|+++.|+.+|.+++.+.|.+|+.+|.+|+...  +.++..+.. .|+++.|+.+|.+..++.
T Consensus       143 ~-~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--~~~~~~i~~-~g~l~~Ll~lL~~~~~~~  218 (528)
T 4b8j_A          143 T-NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS--PKCRDLVLA-NGALLPLLAQLNEHTKLS  218 (528)
T ss_dssp             H-HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC--HHHHHHHHH-TTCHHHHHHTCCTTCCHH
T ss_pred             H-HHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC--hhhHHHHHH-CCcHHHHHHHHhcCCCHH
Confidence            9 77654 578888888899999999999999999999999999999764  467777745 799999999997666788


Q ss_pred             HHHHHHHHHHHhhhh---------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc
Q 046820          219 ATKAALVVIYHTIAS---------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV  271 (350)
Q Consensus       219 a~k~Al~aL~~L~~~---------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~  271 (350)
                      ....|..+|.+|+..                           ...++.+|.+|+...+.+.....+.++++.++..|...
T Consensus       219 v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~  298 (528)
T 4b8j_A          219 MLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP  298 (528)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC
Confidence            999999999999753                           14789999999987766655555789999999999888


Q ss_pred             ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          272 SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       272 S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      ++..++.|+.+|.++|...    +...+.+++.|+++.|+.+|+.+..+..++.|...|..+..
T Consensus       299 ~~~v~~~a~~~L~nl~~~~----~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          299 SPSVLIPALRTVGNIVTGD----DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             CHHHHHHHHHHHHHHTTSC----HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             ChhHHHHHHHHHHHHHcCC----HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            8899999999999999854    45677788999999999999866478999999999888864

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.77  E-value=1.7e-17  Score=166.66  Aligned_cols=250  Identities=14%  Similarity=0.094  Sum_probs=199.5

Q ss_pred             CChhHHHHHHHHHHHHHhcCccccchhhccCch----------HHHHHHHHhccccccccc-hHHHH-------HHHHHH
Q 046820           78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAV----------SVLAAAFESFSKTCLDEN-VSVLE-------EILSTL  139 (350)
Q Consensus        78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai----------~~Lv~lL~~~~~~~~~~~-~~~~e-------~Al~~L  139 (350)
                      ++++.+.+|+..|.+++...+.......+.|++          +.++.++.+...++ +.+ ..+.|       +|+.+|
T Consensus        94 ~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~qAv~aL  172 (458)
T 3nmz_A           94 GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM-DQDKNPMPAPVEHQICPAVCVL  172 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS-CCCSCC--CCCTTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc-ccccCCccchhhHHHHHHHHHH
Confidence            567889999999999999998888888888888          56666665211010 100 01444       899999


Q ss_pred             HhhCCCChhhHhhcccCCcHHHHHHHHcc-----------CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHH
Q 046820          140 ILLFPLEGEALTHLGSASSMGCMIWFLNS-----------GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALF  208 (350)
Q Consensus       140 ~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~-----------gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV  208 (350)
                      . |++.++++|..|.+.|+++.|+.+|..           .+...+.+|+.+|.+|+...  +.++..|....|+||.||
T Consensus       173 ~-nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~--~~~k~~i~~~~GaIp~LV  249 (458)
T 3nmz_A          173 M-KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD--VANKATLCSMKGCMRALV  249 (458)
T ss_dssp             H-HHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHCHHHHHHHH
T ss_pred             H-HhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC--cccHHHHHHcCCcHHHHH
Confidence            9 999888999999999999999999952           23667999999999999764  367777744478999999


Q ss_pred             HHhcCCCChHHHHHHHHHHHHhhhh----H--------------------------HHHHHHHHHHhC-CHhhHHHhhcC
Q 046820          209 KLIEEPISPTATKAALVVIYHTIAS----S--------------------------ASALSVLDGICS-TDCGRENANDK  257 (350)
Q Consensus       209 ~lL~~~~~~~a~k~Al~aL~~L~~~----~--------------------------e~aL~vL~~L~~-~~eGr~ai~~~  257 (350)
                      ++|+++ ++.....|..+|.||+..    +                          +.++.+|.+|+. +++.+..|...
T Consensus       250 ~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~  328 (458)
T 3nmz_A          250 AQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV  328 (458)
T ss_dssp             HGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHS
T ss_pred             HHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHh
Confidence            999976 678889999999999641    1                          478899999999 88999999778


Q ss_pred             CCChHHHHHHHhccChh----HHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 046820          258 PLTMPVVVKKILRVSEL----ATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM  333 (350)
Q Consensus       258 ~~~v~~lv~~l~~~S~~----~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l  333 (350)
                      .|+||+|+++|...++.    .++.|+.+|++|+.+-. ++++.++.+.+.|+++.|+.+|..+ +...++.|...|..+
T Consensus       329 ~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a-~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nL  406 (458)
T 3nmz_A          329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA-TNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNL  406 (458)
T ss_dssp             TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHH
Confidence            99999999999877653    78999999999996300 1145778888999999999998865 788999999999888


Q ss_pred             H
Q 046820          334 N  334 (350)
Q Consensus       334 ~  334 (350)
                      .
T Consensus       407 a  407 (458)
T 3nmz_A          407 S  407 (458)
T ss_dssp             H
T ss_pred             H
Confidence            7

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.76  E-value=7.5e-17  Score=163.70  Aligned_cols=256  Identities=12%  Similarity=0.092  Sum_probs=206.9

Q ss_pred             cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHH-hcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHH
Q 046820           61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWA-KESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTL  139 (350)
Q Consensus        61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~La-k~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L  139 (350)
                      ...+..+++.+.+    .|++.+..|+..+|.+. ++.......+.+.|+||.|+.+|..  .+    ++.++.+|..+|
T Consensus        75 ~~~l~~lv~~l~s----~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~--~~----~~~~q~~Aa~aL  144 (529)
T 3tpo_A           75 NWSVEDIVKGINS----NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TD----CSPIQFESAWAL  144 (529)
T ss_dssp             SCCHHHHHHHHTS----SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC--TT----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC--CC----CHHHHHHHHHHH
Confidence            3467888888876    47889999999999765 4443445678899999999999962  22    477899999999


Q ss_pred             HhhCCCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCC--
Q 046820          140 ILLFPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPIS--  216 (350)
Q Consensus       140 ~~~Ls~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~--  216 (350)
                      . |++.. ++++..+.+.|+++.|+.+|.+++.+.+++|+.+|.+|+.+.  +.++..+-. .|+++.|+.+|.++..  
T Consensus       145 ~-nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~--~~~r~~i~~-~g~i~~Ll~lL~~~~~~~  220 (529)
T 3tpo_A          145 T-NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG--SAFRDLVIK-HGAIDPLLALLAVPDLST  220 (529)
T ss_dssp             H-HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTCHHHHHHTTCSSCGGG
T ss_pred             H-HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC--HHHHHHHHH-cCCcHHHHHHHhccchhH
Confidence            9 78644 477788889999999999999999999999999999999764  578888755 8999999999986522  


Q ss_pred             --hHHHHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHH
Q 046820          217 --PTATKAALVVIYHTIASS----------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVK  266 (350)
Q Consensus       217 --~~a~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~  266 (350)
                        ....+.+..+|.+++...                            ..++.+|..|+...+.+..+....|++|.|++
T Consensus       221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~  300 (529)
T 3tpo_A          221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK  300 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH
Confidence              235667888888886421                            36888889998876666666668999999999


Q ss_pred             HHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          267 KILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       267 ~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      .+...+...++.|+.+|++++..+    +.....++..|+++.|..+|.+. .+..|+.|...|..+..
T Consensus       301 lL~~~~~~v~~~a~~aL~nl~~~~----~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~  364 (529)
T 3tpo_A          301 LLGATELPIVTPALRAIGNIVTGT----DEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA  364 (529)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHT
T ss_pred             HhcCCChhHHHHHHHHHHHHHccc----hHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhc
Confidence            998888899999999999999854    45777788999999999888754 68889999888887754

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.74  E-value=7.3e-17  Score=163.30  Aligned_cols=251  Identities=11%  Similarity=0.088  Sum_probs=201.7

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      |..||+-|+..   .++..|.+|+..|.+++..+++++..++++|+||.|+.+|.   ++    +.++++.|+.+|. |+
T Consensus       102 ip~LV~lL~~~---~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~---s~----~~~v~e~A~~aL~-nL  170 (510)
T 3ul1_B          102 IPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA---SP----HAHISEQAVWALG-NI  170 (510)
T ss_dssp             HHHHHHHTTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CS----CHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HH
Confidence            45566666543   34677889999999999999999999999999999999996   22    4789999999999 88


Q ss_pred             CCC-hhhHhhcccCCcHHHHHHHHccCC-----HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820          144 PLE-GEALTHLGSASSMGCMIWFLNSGD-----LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP  217 (350)
Q Consensus       144 s~~-~e~k~~i~~~~~l~~Lv~~L~~gs-----~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~  217 (350)
                      +.+ ++.+..+.+.|+++.|+.+|.+.+     .....+++.+|.+++....  ... .+....|+++.|++++.++ ++
T Consensus       171 a~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~--~~~-~~~~~~~~lp~L~~LL~~~-~~  246 (510)
T 3ul1_B          171 AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN--PAP-PLDAVEQILPTLVRLLHHN-DP  246 (510)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS--SCC-CHHHHHHHHHHHHHHTTCS-CH
T ss_pred             HhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc--chh-HHHHHHhHHHHHHHHHhcC-CH
Confidence            765 477888889999999999998753     4567789999999986542  222 2223479999999999876 67


Q ss_pred             HHHHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCCH-hhHHHhhcCCCChHHHHHHH
Q 046820          218 TATKAALVVIYHTIASS----------------------------ASALSVLDGICSTD-CGRENANDKPLTMPVVVKKI  268 (350)
Q Consensus       218 ~a~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~~-eGr~ai~~~~~~v~~lv~~l  268 (350)
                      .....|..+|.+|+...                            ..++.+|.+|++.. +.+..+ ...++++.++.++
T Consensus       247 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i-~~~g~l~~L~~LL  325 (510)
T 3ul1_B          247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV-IDAGALAVFPSLL  325 (510)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTGGGGCC-CT
T ss_pred             HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHH-hhccchHHHHHHh
Confidence            88899999999997421                            37899999998754 445555 4789999999988


Q ss_pred             hccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          269 LRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       269 ~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      ...++..++.|+.+|.+|+..+    ......+.+.|+++.|+.+++.+ ....|+.|...|..+..
T Consensus       326 ~~~~~~v~~~A~~aL~nl~a~~----~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~  387 (510)
T 3ul1_B          326 TNPKTNIQKEATWTMSNITAGR----QDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTS  387 (510)
T ss_dssp             TCSSHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCc----HHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            7778889999999999999865    34677777999999999998865 78999999988887754

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.74  E-value=1.8e-16  Score=168.52  Aligned_cols=236  Identities=14%  Similarity=0.116  Sum_probs=193.7

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhh-ccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChh---------
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIV-DNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGE---------  148 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~-~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e---------  148 (350)
                      |.+.+..|+..|..|+... .+|..++ +.|++|.|+.+|++   +    +..++..|+.+|. |+..+.+         
T Consensus       392 d~~v~~~AveaLayLS~~~-~vk~~lv~d~g~Ip~LV~LL~s---~----d~~i~~~al~~L~-NLt~~~d~q~~~~~l~  462 (810)
T 3now_A          392 DKDIRRWAADGLAYLTLDA-ECKEKLIEDKASIHALMDLARG---G----NQSCLYGVVTTFV-NLCNAYEKQEMLPEMI  462 (810)
T ss_dssp             CSSHHHHHHHHHHHHTTSH-HHHHHHHHCHHHHHHHHHHHHT---T----CGGGHHHHHHHHH-HHTTCSCCCCCCCSCG
T ss_pred             CHHHHHHHHHHHHHHhCCc-HHHHHHHHccchHHHHHHHhCC---C----ChHHHHHHHHHHH-HHcCCchhhhhhHHHH
Confidence            5677888999999999765 5555555 67999999999972   2    3568999999999 8975321         


Q ss_pred             ---------------------hH---hhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHH
Q 046820          149 ---------------------AL---THLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAI  204 (350)
Q Consensus       149 ---------------------~k---~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i  204 (350)
                                           .+   +.+.+.|+++.|+.+|++++.+.|++|+.+|.+|+.+   ++++..|.. .|++
T Consensus       463 ~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d---~~~r~~Vv~-~Gai  538 (810)
T 3now_A          463 ELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL---KELRGKVVQ-EGGV  538 (810)
T ss_dssp             GGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS---HHHHHHHHH-TTHH
T ss_pred             HHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHH-CCCH
Confidence                                 22   4566789999999999999999999999999999954   478888866 8999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHhhhhH-------------------------------HHHHHHHHHHhCC-HhhHH
Q 046820          205 EALFKLIEEPISPTATKAALVVIYHTIASS-------------------------------ASALSVLDGICST-DCGRE  252 (350)
Q Consensus       205 ~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~-------------------------------e~aL~vL~~L~~~-~eGr~  252 (350)
                      ++|+.+|+++ ++..++.|..+|.+|+.+.                               ..|+.+|.+|++. ++.+.
T Consensus       539 p~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~  617 (810)
T 3now_A          539 KALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ  617 (810)
T ss_dssp             HHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999987 6788999999999986320                               2588999999997 56677


Q ss_pred             HhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHh-hchHHHHHHHHHhcCchHHHHHHHHHHH
Q 046820          253 NANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQ-VGAFQKLLVLLQVGCAERTKEKASEVLK  331 (350)
Q Consensus       253 ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~-~G~v~~LL~llq~~~t~~ak~kA~~LLk  331 (350)
                      .|. .+|++|.++..+...++..++.|+.+|.+|+...     ..+...+. .|+++.|+.+++++ ....|+.|...|.
T Consensus       618 ~Ii-~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-----~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALa  690 (810)
T 3now_A          618 RII-KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-----DVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALA  690 (810)
T ss_dssp             HHH-HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-----HHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHH
T ss_pred             HHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-----HHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence            775 5789999999999888899999999999999842     35555554 68999888888865 6789999999999


Q ss_pred             HHHh
Q 046820          332 LMNL  335 (350)
Q Consensus       332 ~l~~  335 (350)
                      .+..
T Consensus       691 nLt~  694 (810)
T 3now_A          691 IITS  694 (810)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            8876

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.73  E-value=2.5e-16  Score=159.85  Aligned_cols=251  Identities=12%  Similarity=0.090  Sum_probs=202.6

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      |..||+-|...   .++..+.+|+..|.+++..++.++..++++|+||.|+.+|.   ++    +..+++.|+.+|. |+
T Consensus       121 ip~Lv~lL~~~---~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~---s~----~~~v~e~A~~aL~-nL  189 (529)
T 3tpo_A          121 IPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA---SP----HAHISEQAVWALG-NI  189 (529)
T ss_dssp             HHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CS----CHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HH
Confidence            44566666543   24678889999999999999999999999999999999996   22    4779999999999 88


Q ss_pred             CCC-hhhHhhcccCCcHHHHHHHHccCC-----HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820          144 PLE-GEALTHLGSASSMGCMIWFLNSGD-----LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP  217 (350)
Q Consensus       144 s~~-~e~k~~i~~~~~l~~Lv~~L~~gs-----~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~  217 (350)
                      +.+ ++++..+.+.|+++.|+.+|...+     .....+++.+|.+++....  ... .+....|+++.|+++|.++ ++
T Consensus       190 a~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~--~~~-~~~~~~~~lp~L~~LL~~~-~~  265 (529)
T 3tpo_A          190 AGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN--PAP-PLDAVEQILPTLVRLLHHN-DP  265 (529)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT--TCC-CHHHHHHHHHHHHHHTTSS-CH
T ss_pred             hccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc--chh-hHHHHhhHHHHHHHHhcCC-cH
Confidence            755 478888889999999999998653     4567889999999986542  222 2223479999999999876 77


Q ss_pred             HHHHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHH
Q 046820          218 TATKAALVVIYHTIASS----------------------------ASALSVLDGICST-DCGRENANDKPLTMPVVVKKI  268 (350)
Q Consensus       218 ~a~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l  268 (350)
                      ....+|..+|.+++...                            ..++.+|.+|+.. ++.+..+. ..|+++.++.++
T Consensus       266 ~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL  344 (529)
T 3tpo_A          266 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLL  344 (529)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGHHHHT
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHh-hcccHHHHHHHH
Confidence            88899999999997421                            3789999999875 55555664 789999999988


Q ss_pred             hccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          269 LRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       269 ~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      ...++..++.|+.+|.+||..+    ......+.+.|+++.|+.+++.+ ....|+.|...|..+..
T Consensus       345 ~~~~~~i~~~a~~aL~nl~~~~----~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~  406 (529)
T 3tpo_A          345 TNPKTNIQKEATWTMSNITAGR----QDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTS  406 (529)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTSC----HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhccc----HHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence            8788888999999999999864    34677777999999999999866 68899999988877754

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.71  E-value=4.3e-16  Score=137.68  Aligned_cols=198  Identities=16%  Similarity=0.217  Sum_probs=160.3

Q ss_pred             cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 046820          107 NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELV  185 (350)
Q Consensus       107 aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls  185 (350)
                      .|..|.|+.+|.   ++    +.+++++|+.+|. +++ -+++++..+.+.|+++.|+.+|++++.+.+..|+.+|.+|+
T Consensus        11 ~~~~~~l~~LL~---s~----~~~v~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~   82 (210)
T 4db6_A           11 GSELPQMVQQLN---SP----DQQELQSALRKLS-QIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA   82 (210)
T ss_dssp             --CHHHHHHHTT---CS----CHHHHHHHHHHHH-HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             cchhHHHHHHhc---CC----CHHHHHHHHHHHH-HHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            478999999996   22    4778999999999 776 45577888888899999999999999999999999999998


Q ss_pred             cCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHH
Q 046820          186 SSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVV  265 (350)
Q Consensus       186 ~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv  265 (350)
                      ...  +.++..+.. .|+++.|+.+|+++ ++...+.|..+|.|++.             ..++.+..+. +.++++.++
T Consensus        83 ~~~--~~~~~~i~~-~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~-------------~~~~~~~~~~-~~~~i~~L~  144 (210)
T 4db6_A           83 SGG--NEQIQAVID-AGALPALVQLLSSP-NEQILQEALWALSNIAS-------------GGNEQIQAVI-DAGALPALV  144 (210)
T ss_dssp             TSC--HHHHHHHHH-TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTT-------------SCHHHHHHHH-HTTHHHHHH
T ss_pred             cCC--cHHHHHHHH-CCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHc-------------CCHHHHHHHH-HcCcHHHHH
Confidence            654  467777755 89999999999877 56666666666655553             2344555564 678999999


Q ss_pred             HHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          266 KKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       266 ~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      +.+...++..+++|+.+|+++|..+    +.....+.+.|+++.|+.+++. .++..|++|...|..|..
T Consensus       145 ~ll~~~~~~v~~~a~~aL~~l~~~~----~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          145 QLLSSPNEQILQEALWALSNIASGG----NEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTSC----HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHCC
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHcCC----cHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence            9998888999999999999999864    3466778899999999988885 478999999999988753

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.71  E-value=8e-16  Score=135.95  Aligned_cols=193  Identities=16%  Similarity=0.232  Sum_probs=158.2

Q ss_pred             HHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCC
Q 046820           66 EINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPL  145 (350)
Q Consensus        66 ~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~  145 (350)
                      .++.-+.+    .|++.+..|+..|..++..++.++..+.+.|++|.|+.+|.   ++    +..+++.|+.+|. +++.
T Consensus        16 ~l~~LL~s----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~---~~----~~~v~~~a~~~L~-~l~~   83 (210)
T 4db6_A           16 QMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS---SP----NEQILQEALWALS-NIAS   83 (210)
T ss_dssp             HHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CS----CHHHHHHHHHHHH-HHTT
T ss_pred             HHHHHhcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HHhc
Confidence            44444444    46788889999999999999999999999999999999996   22    4778999999999 7874


Q ss_pred             -ChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHH
Q 046820          146 -EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAAL  224 (350)
Q Consensus       146 -~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al  224 (350)
                       +++++..+.+.|.++.|+.+|++++...|.+|+.+|.+|+...  +..+..+.. .|+++.|+++++++ ++...+.|+
T Consensus        84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a~  159 (210)
T 4db6_A           84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVID-AGALPALVQLLSSP-NEQILQEAL  159 (210)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHH
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHHHHHHH-cCcHHHHHHHHcCC-CHHHHHHHH
Confidence             4577888888999999999999999999999999999999654  355555545 79999999999976 666666666


Q ss_pred             HHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820          225 VVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM  288 (350)
Q Consensus       225 ~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~  288 (350)
                      .+|.+++..             .++.+..+. ..|+++.|++.+...++..++.|..+|.++|.
T Consensus       160 ~aL~~l~~~-------------~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          160 WALSNIASG-------------GNEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHTS-------------CHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcC-------------CcHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            666666532             155666664 67899999998888889999999999999986

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.70  E-value=1.2e-16  Score=146.83  Aligned_cols=197  Identities=11%  Similarity=0.078  Sum_probs=153.9

Q ss_pred             chHHHHHHHHhccccccccchHHHHHHHHHHHhhCCC-ChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcC
Q 046820          109 AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPL-EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSS  187 (350)
Q Consensus       109 ai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~-~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~  187 (350)
                      .+|.|+.+|.+  ++   ...+++..|...|. +|.. ++++|..|.+.|+|+.||.+|++++.+.+++|+.+|.+|+..
T Consensus         9 ~i~~lV~lL~s--~~---~~~~~q~~Aa~~l~-~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~   82 (233)
T 3tt9_A            9 TLERAVSMLEA--DH---MLPSRISAAATFIQ-HECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE   82 (233)
T ss_dssp             CHHHHHHTCCS--SC---CCHHHHHHHHHHHH-HHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHhCC--CC---chHHHHHHHHHHHH-HHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            58999999962  21   12367888888888 7774 457888888899999999999999999999999999999975


Q ss_pred             CCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHH
Q 046820          188 DSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKK  267 (350)
Q Consensus       188 ~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~  267 (350)
                      +  ++++..|.+ .|+||.||++|++..+....+.|..+|+|              |+.+++.|..|..  ++||+|++.
T Consensus        83 ~--~~nk~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~n--------------LS~~~~~k~~i~~--~~i~~Lv~l  143 (233)
T 3tt9_A           83 D--NDNKLEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWN--------------LSSNDKLKNLMIT--EALLTLTEN  143 (233)
T ss_dssp             C--HHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------HHTSGGGHHHHHH--HHHHHHCCC
T ss_pred             C--HHHHHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHH--------------HHcChhhHHHHHh--ccHHHHHHH
Confidence            4  489999977 89999999999854355555555555554              4567788888874  479999986


Q ss_pred             Hh---cc-------------ChhHHHHHHHHHHHHccccccchHHHHHHHHhh-chHHHHHHHHHhc-----CchHHHHH
Q 046820          268 IL---RV-------------SELATELSVSILWKLCMNEKREEKTAFVEALQV-GAFQKLLVLLQVG-----CAERTKEK  325 (350)
Q Consensus       268 l~---~~-------------S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~-G~v~~LL~llq~~-----~t~~ak~k  325 (350)
                      +.   .+             .....++|+++|.+|+..+    ++.++.|.+. |.|+.|+.+++..     ..++.++.
T Consensus       144 l~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~----~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En  219 (233)
T 3tt9_A          144 IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG----ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATEN  219 (233)
T ss_dssp             CCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSC----HHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HhccccCCcccccccccccchHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHH
Confidence            53   12             2367899999999999853    4577788754 7899999999853     25688999


Q ss_pred             HHHHHHHHH
Q 046820          326 ASEVLKLMN  334 (350)
Q Consensus       326 A~~LLk~l~  334 (350)
                      |...|+.|.
T Consensus       220 ~v~~L~nLs  228 (233)
T 3tt9_A          220 CVCILHNLS  228 (233)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999998875

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.69  E-value=3e-15  Score=150.71  Aligned_cols=251  Identities=14%  Similarity=0.106  Sum_probs=204.9

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +..++.-+.+.   .++..+..|+..|..++..++.++..+.+.|++|.|+.+|.   ++    +..+++.|+.+|. ++
T Consensus       119 v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~---~~----~~~v~~~a~~aL~-~l  187 (528)
T 4b8j_A          119 VPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG---SS----SDDVREQAVWALG-NV  187 (528)
T ss_dssp             HHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CS----CHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc---CC----CHHHHHHHHHHHH-HH
Confidence            45566666542   12677889999999999998999999999999999999996   22    4779999999999 77


Q ss_pred             CCC-hhhHhhcccCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820          144 PLE-GEALTHLGSASSMGCMIWFL-NSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK  221 (350)
Q Consensus       144 s~~-~e~k~~i~~~~~l~~Lv~~L-~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k  221 (350)
                      ..+ ++++..+...|+++.|+.+| .+.+...+.+|+.+|.+|+...+  .....+  ..|+++.|+.+|.++ ++....
T Consensus       188 ~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~--~~~~~~--~~~~l~~L~~lL~~~-~~~v~~  262 (528)
T 4b8j_A          188 AGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP--QPSFEQ--TRPALPALARLIHSN-DEEVLT  262 (528)
T ss_dssp             HHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS--CCCHHH--HTTHHHHHHHHTTCC-CHHHHH
T ss_pred             hCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC--CCcHHH--HHHHHHHHHHHHCCC-CHHHHH
Confidence            644 46777887889999999999 55689999999999999997632  222222  379999999999876 778889


Q ss_pred             HHHHHHHHhhhh----------------------------HHHHHHHHHHHhC-CHhhHHHhhcCCCChHHHHHHHhcc-
Q 046820          222 AALVVIYHTIAS----------------------------SASALSVLDGICS-TDCGRENANDKPLTMPVVVKKILRV-  271 (350)
Q Consensus       222 ~Al~aL~~L~~~----------------------------~e~aL~vL~~L~~-~~eGr~ai~~~~~~v~~lv~~l~~~-  271 (350)
                      .|+.+|.+|+..                            .+.|+.+|.+|+. .++....+. +.+++|.|+..|... 
T Consensus       263 ~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~  341 (528)
T 4b8j_A          263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCII-DHQALPCLLSLLTQNL  341 (528)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHHHHcCCC
Confidence            999999999742                            1489999999998 466666665 789999999999888 


Q ss_pred             ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820          272 SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH  336 (350)
Q Consensus       272 S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~  336 (350)
                      ++..++.|+.+|.+++..+    ......++..|+++.|+.+|+.+ .+..|+.|...|..+...
T Consensus       342 ~~~v~~~A~~~L~nl~~~~----~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          342 KKSIKKEACWTISNITAGN----KDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             CHHHHHHHHHHHHHHHTSC----HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHCCC----HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence            7888999999999999843    45677778899999999999876 789999999999888764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.69  E-value=5e-15  Score=147.82  Aligned_cols=252  Identities=14%  Similarity=0.122  Sum_probs=194.0

Q ss_pred             hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhc-cCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820           63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVD-NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL  141 (350)
Q Consensus        63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~-aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~  141 (350)
                      -+..++.-+++    +++..+..|+..|..++..+ .+|..+.. .|+++.|+.+|.+  ..    +.+++..|+.+|. 
T Consensus        18 ~i~~Lv~lL~~----~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~--~~----~~~~~~~a~~~L~-   85 (529)
T 1jdh_A           18 AIPELTKLLND----EDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQN--TN----DVETARCTAGTLH-   85 (529)
T ss_dssp             HHHHHHHHHTC----SCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHH--CC----CHHHHHHHHHHHH-
T ss_pred             hHHHHHHHhCC----CCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhc--CC----CHHHHHHHHHHHH-
Confidence            35566666654    46788889999999999765 46655554 5999999999962  21    3678999999999 


Q ss_pred             hCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820          142 LFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK  221 (350)
Q Consensus       142 ~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k  221 (350)
                      +|+.+++++..+.+.|.++.|+.+|++++.+.+.+|+.+|.+|+...+  ..+..+.. .|+++.|+++++++ +++...
T Consensus        86 ~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~-~g~i~~L~~ll~~~-~~~~~~  161 (529)
T 1jdh_A           86 NLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE--GAKMAVRL-AGGLQKMVALLNKT-NVKFLA  161 (529)
T ss_dssp             HHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT--THHHHHHH-HTHHHHHHHGGGCC-CHHHHH
T ss_pred             HHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc--chHHHHHH-cCCHHHHHHHHhcC-CHHHHH
Confidence            788788888888888999999999999999999999999999987643  56666645 79999999999976 666777


Q ss_pred             HHHHHHHHhhhhH-----------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHh---
Q 046820          222 AALVVIYHTIASS-----------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKKIL---  269 (350)
Q Consensus       222 ~Al~aL~~L~~~~-----------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~---  269 (350)
                      .+..+|.+++..+                             +.+..+|.+|+.+++.+..+. ..++++.+++.+.   
T Consensus       162 ~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~g~~~~L~~ll~~~~  240 (529)
T 1jdh_A          162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPS  240 (529)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHH-HTTHHHHHHTTTTSSC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHH-HCCCHHHHHHHHhCCC
Confidence            7778888876421                             246788889999988888876 4566666554443   


Q ss_pred             ------------------------------------ccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHH
Q 046820          270 ------------------------------------RVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVL  313 (350)
Q Consensus       270 ------------------------------------~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~l  313 (350)
                                                          ..++..++.|+.+|+++|..+    .+....+.+.|+++.|+.+
T Consensus       241 ~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~----~~~~~~~~~~~~v~~L~~l  316 (529)
T 1jdh_A          241 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRT  316 (529)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC----HHHHHHHHHTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC----HHHHHHHHHcCChHHHHHH
Confidence                                                334556777777787777743    3466777799999999999


Q ss_pred             HHhcC-chHHHHHHHHHHHHHHh
Q 046820          314 LQVGC-AERTKEKASEVLKLMNL  335 (350)
Q Consensus       314 lq~~~-t~~ak~kA~~LLk~l~~  335 (350)
                      |.... .+..++.|...|..+..
T Consensus       317 l~~~~~~~~v~~~a~~~L~nl~~  339 (529)
T 1jdh_A          317 VLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHccCCHHHHHHHHHHHHHHHHc
Confidence            98643 37889998888887753

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.68  E-value=7.4e-15  Score=152.20  Aligned_cols=252  Identities=14%  Similarity=0.126  Sum_probs=195.9

Q ss_pred             hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhcc-CchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820           63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDN-AAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL  141 (350)
Q Consensus        63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~a-Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~  141 (350)
                      .+..++.-+++    +++..+..|+..|..++.++ .+|..+... |+++.|+.+|.+  ..    +.+++..|+.+|. 
T Consensus        15 ~i~~Lv~lL~~----~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~--~~----~~~~~~~A~~~L~-   82 (644)
T 2z6h_A           15 AIPELTKLLND----EDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQN--TN----DVETARCTAGTLH-   82 (644)
T ss_dssp             THHHHHHHHTC----SCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHS--CC----CHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHcC----CCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhc--CC----CHHHHHHHHHHHH-
Confidence            36667776664    46788889999999999876 477777655 999999999972  11    4678999999999 


Q ss_pred             hCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820          142 LFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK  221 (350)
Q Consensus       142 ~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k  221 (350)
                      +|+.+++++..+.+.|.++.|+.+|++++.+.+.+|+.+|.+|+...+  ..+..+.. .|+++.|+++|+++ +++...
T Consensus        83 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~--~~~~~v~~-~g~i~~Lv~lL~~~-~~~~~~  158 (644)
T 2z6h_A           83 NLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE--GAKMAVRL-AGGLQKMVALLNKT-NVKFLA  158 (644)
T ss_dssp             HHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST--THHHHHHH-TTHHHHHHHGGGCC-CHHHHH
T ss_pred             HHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc--hhHHHHHH-CCChHHHHHHHCcC-CHHHHH
Confidence            888888888888888999999999999999999999999999987642  55666644 79999999999977 667777


Q ss_pred             HHHHHHHHhhhhH-----------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc-
Q 046820          222 AALVVIYHTIASS-----------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV-  271 (350)
Q Consensus       222 ~Al~aL~~L~~~~-----------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~-  271 (350)
                      .++.+|.+++..+                             +.++.+|.+|+.+++.|..+. ..++++.+++.+... 
T Consensus       159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~-~~g~l~~L~~ll~~~~  237 (644)
T 2z6h_A          159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPS  237 (644)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHH-HTTHHHHHHTTTTCSC
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHH-HCCCHHHHHHHHhcCC
Confidence            7788898887411                             357889999999999999886 456777776655443 


Q ss_pred             --------------------------------------ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHH
Q 046820          272 --------------------------------------SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVL  313 (350)
Q Consensus       272 --------------------------------------S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~l  313 (350)
                                                            ++..++.|+.+|++||..+    ......+.+.|+++.|+.+
T Consensus       238 ~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~----~~~~~~v~~~g~v~~Lv~l  313 (644)
T 2z6h_A          238 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRT  313 (644)
T ss_dssp             HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----HHHHHHHHHcCCHHHHHHH
Confidence                                                  3444556666666665532    3456677789999999999


Q ss_pred             HHhcCc-hHHHHHHHHHHHHHHh
Q 046820          314 LQVGCA-ERTKEKASEVLKLMNL  335 (350)
Q Consensus       314 lq~~~t-~~ak~kA~~LLk~l~~  335 (350)
                      |+...+ +..+..|...|..|..
T Consensus       314 L~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          314 VLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHccCCcHHHHHHHHHHHHHHhc
Confidence            986543 6889998888888753

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.68  E-value=7.9e-15  Score=148.03  Aligned_cols=253  Identities=11%  Similarity=0.121  Sum_probs=206.6

Q ss_pred             chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhc-CccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820           62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKE-SESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI  140 (350)
Q Consensus        62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~-s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~  140 (350)
                      ..+..++..|.+    +++..+..|+..|+.+... +..++..+.+.|++|.|+.+|.+  +.    +..++.+|+.+|.
T Consensus        87 ~~i~~lv~~L~s----~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~--~~----~~~v~~~A~~~L~  156 (530)
T 1wa5_B           87 QELPQMTQQLNS----DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE--NQ----PEMLQLEAAWALT  156 (530)
T ss_dssp             CCHHHHHHHHSC----SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST--TS----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCC--CC----CHHHHHHHHHHHH
Confidence            347777777765    4678888999999998654 35567788899999999999962  11    3678999999999


Q ss_pred             hhCCCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHH
Q 046820          141 LLFPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTA  219 (350)
Q Consensus       141 ~~Ls~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a  219 (350)
                       ++... ++.+..+...++++.|+.+|++++.+.|.+|+.+|.+|+...  +.++..+.. .|+++.|+.++.+. ++..
T Consensus       157 -~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~--~~~~~~~~~-~~~l~~L~~ll~~~-~~~v  231 (530)
T 1wa5_B          157 -NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS--TDYRDYVLQ-CNAMEPILGLFNSN-KPSL  231 (530)
T ss_dssp             -HHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTCHHHHHHGGGSC-CHHH
T ss_pred             -HHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--ccchHHHHH-cCcHHHHHHHhccC-CHHH
Confidence             67643 467777778899999999999999999999999999999764  467777645 79999999999974 7788


Q ss_pred             HHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhc
Q 046820          220 TKAALVVIYHTIASS----------------------------ASALSVLDGICST-DCGRENANDKPLTMPVVVKKILR  270 (350)
Q Consensus       220 ~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~  270 (350)
                      ...|+.+|.+|+...                            ..++.+|.+|+.. ++....+. ..++++.|+..+..
T Consensus       232 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~Lv~lL~~  310 (530)
T 1wa5_B          232 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSH  310 (530)
T ss_dssp             HHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGC
T ss_pred             HHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH-hcCcHHHHHHHHCC
Confidence            899999999998320                            3789999999975 55666664 67899999999987


Q ss_pred             cChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          271 VSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       271 ~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      .++..++.|+.+|.++|...    +...+.++..|+++.|+.+|+.+ .+..|+.|...|..+..
T Consensus       311 ~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          311 ESTLVQTPALRAVGNIVTGN----DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA  370 (530)
T ss_dssp             SCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred             CChhhHHHHHHHHHHHHcCC----HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            88889999999999999854    34666677889999999988865 68899999988888764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.66  E-value=2.3e-14  Score=139.88  Aligned_cols=251  Identities=14%  Similarity=0.079  Sum_probs=198.7

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHh--cCccccchhhcc-CchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAK--ESESNKSCIVDN-AAVSVLAAAFESFSKTCLDENVSVLEEILSTLI  140 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak--~s~~nR~~i~~a-Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~  140 (350)
                      +..+++.+.+    +++..+..|+..|+.+..  .++..+. +.+. |++|.|+.+|.+  +    .+..++..|+.+|.
T Consensus        22 l~~l~~~l~s----~~~~~r~~A~~~L~~l~~~~~~~~~~~-~~~~~~~i~~L~~~L~~--~----~~~~v~~~a~~~L~   90 (450)
T 2jdq_A           22 TSDMIEMIFS----KSPEQQLSATQKFRKLLSKEPNPPIDE-VISTPGVVARFVEFLKR--K----ENCTLQFESAWVLT   90 (450)
T ss_dssp             CHHHHHHHHS----SCHHHHHHHHHHHHHHHHSSSSCCHHH-HHTSTTHHHHHHHHHTC--T----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC----CCHHHHHHHHHHHHHHhcCCCCCcHHH-HHHcCCcHHHHHHHHCC--C----CCHHHHHHHHHHHH
Confidence            5677777765    467788899999999765  3334444 4455 999999999962  2    13678999999998


Q ss_pred             hhCCC-ChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHH
Q 046820          141 LLFPL-EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTA  219 (350)
Q Consensus       141 ~~Ls~-~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a  219 (350)
                       ++.. ++++...+...+.++.|+.+|++++.+.|+.|+.+|.+|+...  +.++..+-. .|+++.|++++.+..++..
T Consensus        91 -~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~--~~~~~~~~~-~~~i~~L~~~l~~~~~~~v  166 (450)
T 2jdq_A           91 -NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS--TMCRDYVLD-CNILPPLLQLFSKQNRLTM  166 (450)
T ss_dssp             -HHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTCHHHHHHHTTSCCCHHH
T ss_pred             -HHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC--HHHHHHHHH-CCCHHHHHHHhcCCCCHHH
Confidence             6654 3466666667899999999999999999999999999999764  366666644 7999999999997557888


Q ss_pred             HHHHHHHHHHhhhh----------------------------HHHHHHHHHHHhCCH-hhHHHhhcCCCChHHHHHHHhc
Q 046820          220 TKAALVVIYHTIAS----------------------------SASALSVLDGICSTD-CGRENANDKPLTMPVVVKKILR  270 (350)
Q Consensus       220 ~k~Al~aL~~L~~~----------------------------~e~aL~vL~~L~~~~-eGr~ai~~~~~~v~~lv~~l~~  270 (350)
                      .+.|+.+|.+++..                            .+.++.+|.+|+... +.+..+ ...+++|.+++.+..
T Consensus       167 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~ll~~  245 (450)
T 2jdq_A          167 TRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV-IDAGVCRRLVELLMH  245 (450)
T ss_dssp             HHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHH-HHTTTHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHH-HHcCcHHHHHHHHCC
Confidence            99999999999831                            147888999999864 445555 467899999999887


Q ss_pred             cChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          271 VSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       271 ~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      .++..++.|+.+|.+++...    +...+.+++.|+++.|+.+|+.. .+..|+.|...|..+..
T Consensus       246 ~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~  305 (450)
T 2jdq_A          246 NDYKVVSPALRAVGNIVTGD----DIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITA  305 (450)
T ss_dssp             SCHHHHHHHHHHHHHHTTSC----HHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTT
T ss_pred             CchhHHHHHHHHHHHHhhCC----hHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            78889999999999999864    34566677889999999988864 78899998888877754

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.66  E-value=5.3e-15  Score=157.25  Aligned_cols=243  Identities=12%  Similarity=0.082  Sum_probs=187.7

Q ss_pred             hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820           63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL  142 (350)
Q Consensus        63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~  142 (350)
                      .+..+++.|.++    +.+.+..+++.|+..      ++.++. .|++|.|+.+|.   +.    +..+++.|+.+|. +
T Consensus       116 ~i~~lv~~L~~~----~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~---~~----d~~vr~~A~~~L~-~  176 (780)
T 2z6g_A          116 AHPTNVQRLAEP----SQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLN---DE----DQVVVNKAAVMVH-Q  176 (780)
T ss_dssp             ----------CC----SCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHH---CS----CHHHHHHHHHHHH-H
T ss_pred             cHHHHHHHhcCc----cHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHC---CC----CHHHHHHHHHHHH-H
Confidence            356777888764    345666677776643      445666 899999999996   22    4779999999999 7


Q ss_pred             CCCChhhHhhcc-cCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHH
Q 046820          143 FPLEGEALTHLG-SASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTAT  220 (350)
Q Consensus       143 Ls~~~e~k~~i~-~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~  220 (350)
                      |+.+++++..+. .++.++.|+.+|+++ +.+.|.+|+.+|++|+..   .+++..|+. .|+|+.|+++|+++ ++..+
T Consensus       177 L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~---~~~~~~i~~-~g~I~~Lv~lL~~~-~~~v~  251 (780)
T 2z6g_A          177 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH---REGLLAIFK-SGGIPALVNMLGSP-VDSVL  251 (780)
T ss_dssp             HHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS---HHHHHHHHH-TTHHHHHHHHTTCS-CHHHH
T ss_pred             HhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC---chhHHHHHH-cCCHHHHHHHHcCC-CHHHH
Confidence            887777776665 468999999999977 899999999999999876   367878877 69999999999977 68899


Q ss_pred             HHHHHHHHHhhhhH----------------------------HHHHHHHHHHhC-CHhhHHHhhcCCCChHHHHHHHhcc
Q 046820          221 KAALVVIYHTIASS----------------------------ASALSVLDGICS-TDCGRENANDKPLTMPVVVKKILRV  271 (350)
Q Consensus       221 k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~-~~eGr~ai~~~~~~v~~lv~~l~~~  271 (350)
                      +.|+.+|.+|+...                            +.++.+|..|+. +++++..+. ..++++.|++.+...
T Consensus       252 ~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~-~~~~i~~Lv~lL~~~  330 (780)
T 2z6g_A          252 FHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL-ASGGPQALVNIMRTY  330 (780)
T ss_dssp             HHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH-HcCCHHHHHHHHhcC
Confidence            99999999997531                            356678888885 689999986 568899999988776


Q ss_pred             Ch-hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820          272 SE-LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH  336 (350)
Q Consensus       272 S~-~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~  336 (350)
                      ++ ...+.|+.+|++||...     .....+++.|+++.|+.+++.+ .+..++.|...|..|...
T Consensus       331 ~~~~~~~~a~~aL~~Ls~~~-----~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~~  390 (780)
T 2z6g_A          331 TYEKLLWTTSRVLKVLSVCS-----SNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDA  390 (780)
T ss_dssp             CCHHHHHHHHHHHHHHHTST-----THHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhhcCh-----HHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHHHHHhcc
Confidence            54 56789999999999753     3667788999999999888755 678899988888877653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.66  E-value=8e-15  Score=146.33  Aligned_cols=253  Identities=13%  Similarity=0.107  Sum_probs=201.0

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +..+++-+.+    +++..+..|+..|..++..++.++..+.+.|++|.|+.+|.   ++    +.++++.+..+|. ++
T Consensus       103 i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~---~~----~~~~~~~~~~~L~-~l  170 (529)
T 1jdh_A          103 IPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KT----NVKFLAITTDCLQ-IL  170 (529)
T ss_dssp             HHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG---CC----CHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh---cC----CHHHHHHHHHHHH-HH
Confidence            3344444443    46678889999999999998889999999999999999996   22    3667788878887 67


Q ss_pred             CCC-hhhHhhcccCCcHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820          144 PLE-GEALTHLGSASSMGCMIWFLNSGD-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK  221 (350)
Q Consensus       144 s~~-~e~k~~i~~~~~l~~Lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k  221 (350)
                      +.. ++++..+.+.++++.++.+|++++ ...+..++.+|.+|+..   +.++..+.. .|+++.|+.++.++ ++...+
T Consensus       171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~-~g~~~~L~~ll~~~-~~~~~~  245 (529)
T 1jdh_A          171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC---SSNKPAIVE-AGGMQALGLHLTDP-SQRLVQ  245 (529)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---TTHHHHHHH-TTHHHHHHTTTTSS-CHHHHH
T ss_pred             HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC---cccHHHHHH-CCCHHHHHHHHhCC-ChHHHH
Confidence            654 588888888899999999999884 55666788999999865   367777745 79999999999877 778889


Q ss_pred             HHHHHHHHhhhh-------------------------HHHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhccC--h
Q 046820          222 AALVVIYHTIAS-------------------------SASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRVS--E  273 (350)
Q Consensus       222 ~Al~aL~~L~~~-------------------------~e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~S--~  273 (350)
                      .++.+|.+|+..                         .+.++.+|.+|+.. ++.+..+. +.++++.+++.+...+  +
T Consensus       246 ~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~L~~ll~~~~~~~  324 (529)
T 1jdh_A          246 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDRE  324 (529)
T ss_dssp             HHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHH-HTTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHHccCCHH
Confidence            999999998742                         14789999999885 56888875 6789999999997643  5


Q ss_pred             hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          274 LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       274 ~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      ..++.|+.+|++|+...++ ++..+..+.+.|+++.|+.+|+.+..+..++.|...|..+..
T Consensus       325 ~v~~~a~~~L~nl~~~~~~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~  385 (529)
T 1jdh_A          325 DITEPAICALRHLTSRHQE-AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  385 (529)
T ss_dssp             HHHHHHHHHHHHHTSSSTT-HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCch-HHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence            7889999999999986542 234566777999999999999876556788888777776653

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.66  E-value=1.2e-15  Score=138.35  Aligned_cols=185  Identities=15%  Similarity=0.203  Sum_probs=153.5

Q ss_pred             CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhH-hhcccC
Q 046820           78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEAL-THLGSA  156 (350)
Q Consensus        78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k-~~i~~~  156 (350)
                      ++++.+..|+..|..++..++.++..+.+.|++|.|+.+|.   ++    +..+++.|+.+|. +|+.+++++ ..+.+.
T Consensus        66 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~---~~----~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~  137 (252)
T 4db8_A           66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SP----NEQILQEALWALS-NIASGGNEQIQAVIDA  137 (252)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---CS----CHHHHHHHHHHHH-HHTTSCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HhhcCCchHHHHHHHC
Confidence            45678889999999999999999999999999999999997   22    4779999999999 888777766 777889


Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHH
Q 046820          157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS  236 (350)
Q Consensus       157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~  236 (350)
                      |.++.|+.+|++++.+.+.+|+.+|.+|+...  +..+..+.. .|+++.|++++.++ ++.....|+.+|.+++.    
T Consensus       138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~----  209 (252)
T 4db8_A          138 GALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVID-AGALPALVQLLSSP-NEQILQEALWALSNIAS----  209 (252)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHH-TTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTT----
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--hHHHHHHHH-CCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhc----
Confidence            99999999999999999999999999999754  366666645 79999999999976 66555555555555542    


Q ss_pred             HHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820          237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM  288 (350)
Q Consensus       237 aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~  288 (350)
                               ..++.+..+. +.++++.+++.+...++..++.|+.+|.+||+
T Consensus       210 ---------~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          210 ---------GGNEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             ---------SCHHHHHHHH-HTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             ---------CCHHHHHHHH-HCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence                     2355666664 67899999999988889999999999999986

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.65  E-value=3.4e-14  Score=138.67  Aligned_cols=252  Identities=12%  Similarity=0.076  Sum_probs=199.8

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +..+++.+.+.   .+...+..|+..|..++..++.++..+.+.|++|.|+.+|.   ++    +..+++.|+.+|. ++
T Consensus        66 i~~L~~~L~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~----~~~vr~~a~~~L~-~l  134 (450)
T 2jdq_A           66 VARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS---SE----FEDVQEQAVWALG-NI  134 (450)
T ss_dssp             HHHHHHHHTCT---TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTT---CS----CHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HH
Confidence            44555555442   15678889999999999988888888889999999999996   22    4779999999998 67


Q ss_pred             CCC-hhhHhhcccCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820          144 PLE-GEALTHLGSASSMGCMIWFLNS-GDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK  221 (350)
Q Consensus       144 s~~-~e~k~~i~~~~~l~~Lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k  221 (350)
                      ..+ ++.+..+.+.+.++.++.+|++ .+.+.|.+|+.+|.+|+...+ +.....+  ..++++.|+++++++ ++....
T Consensus       135 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~--~~~~l~~L~~~l~~~-~~~v~~  210 (450)
T 2jdq_A          135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS-PPPEFAK--VSPCLNVLSWLLFVS-DTDVLA  210 (450)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSS-SCCCGGG--TGGGHHHHHHHTTCC-CHHHHH
T ss_pred             ccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCC-CCCCHHH--HHHHHHHHHHHHccC-CHHHHH
Confidence            644 3677777788999999999996 589999999999999996531 1222223  279999999999876 677888


Q ss_pred             HHHHHHHHhhhh----------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccCh
Q 046820          222 AALVVIYHTIAS----------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSE  273 (350)
Q Consensus       222 ~Al~aL~~L~~~----------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~  273 (350)
                      .|..+|.+++..                            .+.|+.+|.+|+...+.......+.++++.+++.+...++
T Consensus       211 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  290 (450)
T 2jdq_A          211 DACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE  290 (450)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCH
Confidence            999999999642                            1478999999998644443333467899999999888788


Q ss_pred             hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          274 LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       274 ~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      ..++.|+.+|.+++..+    ....+.+++.|+++.|+.+|+.+ .+..|+.|...|..+..
T Consensus       291 ~vr~~a~~~L~~l~~~~----~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~  347 (450)
T 2jdq_A          291 SIKKEACWTISNITAGN----RAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATS  347 (450)
T ss_dssp             HHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC----HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence            88999999999999754    34666777889999999999865 78899999998887754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.64  E-value=2.2e-14  Score=144.76  Aligned_cols=251  Identities=16%  Similarity=0.115  Sum_probs=201.5

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +..++.-+.+.   .++..+..|+..|..++..++.++..+.+.|++|.|+.+|.+   +    +..+++.|+.+|. ++
T Consensus       132 i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~---~----~~~vr~~A~~aL~-~l  200 (530)
T 1wa5_B          132 VPRLVEFMREN---QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT---G----SVEVKEQAIWALG-NV  200 (530)
T ss_dssp             HHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH---C----CHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC---C----CHHHHHHHHHHHH-HH
Confidence            34444444432   156778899999999999888899999999999999999972   2    3779999999999 77


Q ss_pred             CCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHH
Q 046820          144 PLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKA  222 (350)
Q Consensus       144 s~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~  222 (350)
                      ..+ ++++..+...+.++.|+.+|.+.+.+.+.+|+.+|.+|+...+ +.....+  ..++++.|+.+|.++ ++.....
T Consensus       201 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~--~~~~l~~L~~lL~~~-d~~v~~~  276 (530)
T 1wa5_B          201 AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK-PQPDWSV--VSQALPTLAKLIYSM-DTETLVD  276 (530)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS-SCCCHHH--HGGGHHHHHHHTTCC-CHHHHHH
T ss_pred             hCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC-CCCcHHH--HHhHHHHHHHHHcCC-CHHHHHH
Confidence            644 4777777778999999999999999999999999999996531 1222222  379999999999876 6778889


Q ss_pred             HHHHHHHhhhh----------------------------HHHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhccCh
Q 046820          223 ALVVIYHTIAS----------------------------SASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRVSE  273 (350)
Q Consensus       223 Al~aL~~L~~~----------------------------~e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~S~  273 (350)
                      |+.+|.+|+..                            .+.|+.+|.+|+.. ++....+. +.+++|.++..|...++
T Consensus       277 a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~  355 (530)
T 1wa5_B          277 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKE  355 (530)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCCCH
Confidence            99999999742                            14789999999974 55555554 57899999998887788


Q ss_pred             hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          274 LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       274 ~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      ..++.|+.+|.+++..+    ....+.+++.|+++.|+.+|+.+ .+..|+.|...|..+..
T Consensus       356 ~vr~~A~~aL~~l~~~~----~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~  412 (530)
T 1wa5_B          356 NIKKEACWTISNITAGN----TEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASS  412 (530)
T ss_dssp             HHHHHHHHHHHHHTTSC----HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC----HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHh
Confidence            88999999999999854    34666777899999999999864 78999999999988865

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.62  E-value=1.5e-14  Score=130.06  Aligned_cols=199  Identities=17%  Similarity=0.177  Sum_probs=160.5

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +..++.-+.+    ++.+.+..|+..|..++..++.++..+.+.|++|.|+.+|.   ++    +.++++.|+.+|. +|
T Consensus        46 i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---~~----~~~v~~~a~~~L~-~l  113 (252)
T 4hxt_A           46 VEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---ST----DSEVQKEAARALA-NI  113 (252)
T ss_dssp             HHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CS----SHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc---CC----CHHHHHHHHHHHH-HH
Confidence            3445555544    46678889999999999998999999999999999999996   22    4778999999999 78


Q ss_pred             C-CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHH
Q 046820          144 P-LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKA  222 (350)
Q Consensus       144 s-~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~  222 (350)
                      . .+++++..+.+.|.++.|+.+|++++.+.+.+|+.+|.+|+...  +..+..+.. .|+++.|+.++.++ ++.....
T Consensus       114 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~  189 (252)
T 4hxt_A          114 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEAIKAIVD-AGGVEVLVKLLTST-DSEVQKE  189 (252)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHH-CcCHHHHHHHHCCC-CHHHHHH
Confidence            7 56688888888899999999999999999999999999999754  356556645 89999999999865 5555555


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcccccc
Q 046820          223 ALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKR  292 (350)
Q Consensus       223 Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~  292 (350)
                      |+.+|.+++.             ..++.+..+. +.++++.+++.+...++..++.|+.+|.+|+.....
T Consensus       190 a~~~L~~l~~-------------~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          190 AARALANIAS-------------GPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHHHHTT-------------SBHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred             HHHHHHHHHc-------------CCHHHHHHHH-HCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence            5555555542             1345555664 689999999998888889999999999999987653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.62  E-value=5.8e-14  Score=145.49  Aligned_cols=253  Identities=13%  Similarity=0.109  Sum_probs=200.4

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +..+++-+.+    +++..+..|+..|.+++..++.++..+.+.|++|.|+.+|.   .+    +..++..++.+|. ++
T Consensus       100 i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~---~~----~~~~~~~a~~~L~-~L  167 (644)
T 2z6h_A          100 IPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KT----NVKFLAITTDCLQ-IL  167 (644)
T ss_dssp             HHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG---CC----CHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHC---cC----CHHHHHHHHHHHH-HH
Confidence            4445555544    46678889999999999998889999999999999999996   22    3556666777777 67


Q ss_pred             CC-ChhhHhhcccCCcHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820          144 PL-EGEALTHLGSASSMGCMIWFLNSGD-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK  221 (350)
Q Consensus       144 s~-~~e~k~~i~~~~~l~~Lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k  221 (350)
                      +. ++++|..+.+.++++.|+.+|++++ ...+.+++.+|.+|+..   +.++..+-. .|+++.|+.+++++ ++....
T Consensus       168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~---~~~~~~l~~-~g~l~~L~~ll~~~-~~~~~~  242 (644)
T 2z6h_A          168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC---SSNKPAIVE-AGGMQALGLHLTDP-SQRLVQ  242 (644)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC---TTHHHHHHH-TTHHHHHHTTTTCS-CHHHHH
T ss_pred             HhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC---cccHHHHHH-CCCHHHHHHHHhcC-CHHHHH
Confidence            65 5688888888899999999999884 66788999999999864   367777645 79999999999876 678889


Q ss_pred             HHHHHHHHhhhh-------------------------HHHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhccC--h
Q 046820          222 AALVVIYHTIAS-------------------------SASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRVS--E  273 (350)
Q Consensus       222 ~Al~aL~~L~~~-------------------------~e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~S--~  273 (350)
                      .++.+|.+|+..                         .+.+..+|.+|+.. ++.+..+. +.++|+.|++.+...+  +
T Consensus       243 ~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~-~~g~v~~Lv~lL~~~~~~~  321 (644)
T 2z6h_A          243 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDRE  321 (644)
T ss_dssp             HHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHHccCCcH
Confidence            999999999752                         14789999999885 56777775 6789999999998744  6


Q ss_pred             hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          274 LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       274 ~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      ..++.|+.+|.+|+...++ +......+...|+++.|+.+|+....+..++.|..+|..+..
T Consensus       322 ~v~~~a~~aL~nL~~~~~~-~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~  382 (644)
T 2z6h_A          322 DITEPAICALRHLTSRHQE-AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  382 (644)
T ss_dssp             HHHHHHHHHHHHHTSSSTT-HHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCch-HHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence            8899999999999986542 122344466889999999999876556888888888877654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.58  E-value=5.5e-14  Score=147.73  Aligned_cols=223  Identities=12%  Similarity=0.090  Sum_probs=176.4

Q ss_pred             ccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHH---HHHH
Q 046820          100 NKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLS---RRRN  176 (350)
Q Consensus       100 nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~---~r~~  176 (350)
                      ||..+.++|+||.|+.++.+   +    +..+++.|+.+|. +|+.++++|..+...|+++.|+.+|.+++..   .|.+
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S---~----s~~~re~A~~aL~-nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~  520 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHN---L----SPNCKQQVVRIIY-NITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRIL  520 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGG---S----CHHHHHHHHHHHH-HHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcC---C----CHHHHHHHHHHHH-HHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHH
Confidence            78889999999999999962   2    3678999999999 8998889999999999999999999999654   8999


Q ss_pred             HHHHHHHHhcCCCchhHHhhhh--chhhHHHHHHHHhcCCCCh-------------HHHHHHHHHHHHhhhhH-------
Q 046820          177 AVLLLTELVSSDSDQRKVNVLS--ENEGAIEALFKLIEEPISP-------------TATKAALVVIYHTIASS-------  234 (350)
Q Consensus       177 Aa~lL~~Ls~~~~~~~~~~~Ig--~~~g~i~~LV~lL~~~~~~-------------~a~k~Al~aL~~L~~~~-------  234 (350)
                      |+.+|.+|+...+   ....++  ...|+|++|+.||..+...             ..+..|+++|.||+...       
T Consensus       521 AA~ALArLlis~n---p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~  597 (778)
T 3opb_A          521 GCRALTRMLIFTN---PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEV  597 (778)
T ss_dssp             HHHHHHHHHHTSC---HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHHHhcCC---HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHH
Confidence            9999999986542   223453  2259999999999832111             23789999999997531       


Q ss_pred             --------------------------HHHHHHHHHHhCCHhhH-HHhhcCCC-----ChHHHHHHHhccChhHHHHHHHH
Q 046820          235 --------------------------ASALSVLDGICSTDCGR-ENANDKPL-----TMPVVVKKILRVSELATELSVSI  282 (350)
Q Consensus       235 --------------------------e~aL~vL~~L~~~~eGr-~ai~~~~~-----~v~~lv~~l~~~S~~~~E~Av~i  282 (350)
                                                +.|+.++.+|+.+++|+ +.+.....     .++.+|.++.......++.|+++
T Consensus       598 r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagA  677 (778)
T 3opb_A          598 CKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAI  677 (778)
T ss_dssp             HHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHH
Confidence                                      37999999999999998 46754331     37789998877778899999999


Q ss_pred             HHHHccccccchHHHHHHHHhh-chHHHHHHHHHhc-CchHHHHHHHHHHHHHHhcc
Q 046820          283 LWKLCMNEKREEKTAFVEALQV-GAFQKLLVLLQVG-CAERTKEKASEVLKLMNLHR  337 (350)
Q Consensus       283 L~~Lc~~~~~~~~~~~~~~~~~-G~v~~LL~llq~~-~t~~ak~kA~~LLk~l~~~~  337 (350)
                      |.+++...    +...+.+++. ++++.|+.+++.. ..+..+.++..+|..+..+-
T Consensus       678 LAnLts~~----~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          678 FANIATTI----PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             HHHHHHHC----HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCC----hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence            99997643    4567777765 8999999999973 35889999999999888744

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.58  E-value=1.9e-13  Score=145.23  Aligned_cols=243  Identities=14%  Similarity=0.113  Sum_probs=194.0

Q ss_pred             CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCC-ChhhHhhcccC
Q 046820           78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPL-EGEALTHLGSA  156 (350)
Q Consensus        78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~-~~e~k~~i~~~  156 (350)
                      ++...+..|+..|.+++..++.+|..+.+.|++|.|+.+|.   .+    +..+++.++.+|. +|+. +++++..+.+.
T Consensus       246 ~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~---~~----~~~v~~~a~~aL~-~La~~~~e~~~~i~~~  317 (780)
T 2z6g_A          246 PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KT----NVKFLAITTDCLQ-ILAYGNQESKLIILAS  317 (780)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG---CC----CHHHHHHHHHHHH-HHHTTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh---cC----CHHHHHHHHHHHH-HHhcCChHHHHHHHHc
Confidence            46678889999999999999899999999999999999996   22    3567788877887 6665 45888888888


Q ss_pred             CcHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh--
Q 046820          157 SSMGCMIWFLNSGD-LSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS--  233 (350)
Q Consensus       157 ~~l~~Lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~--  233 (350)
                      +.++.|+.+|++++ ...+..|+.+|.+|+...   .++..+.. .|+++.|+.++.++ ++..++.|+.+|.+|+..  
T Consensus       318 ~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~---~~~~~i~~-~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~~~~  392 (780)
T 2z6g_A          318 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVE-AGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAAT  392 (780)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST---THHHHHHH-TTHHHHHGGGTTCS-CHHHHHHHHHHHHHHHTTCT
T ss_pred             CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh---HHHHHHHH-hchHHHHHHHHcCC-chHHHHHHHHHHHHHhccch
Confidence            99999999999885 455668899999999653   56766645 79999999999876 677889999999998631  


Q ss_pred             -----------------------HHHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhccC--hhHHHHHHHHHHHHc
Q 046820          234 -----------------------SASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRVS--ELATELSVSILWKLC  287 (350)
Q Consensus       234 -----------------------~e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~S--~~~~E~Av~iL~~Lc  287 (350)
                                             .+.|+.+|.+|+.. ++.+..+. ..++|+.|++.|...+  +..++.|+.+|.+|+
T Consensus       393 ~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~  471 (780)
T 2z6g_A          393 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDREDITEPAICALRHLT  471 (780)
T ss_dssp             TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH-TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH-HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence                                   15789999999886 46666665 7889999999998643  378999999999998


Q ss_pred             cccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          288 MNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       288 ~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      ....+ .......+...|+++.|+.+|+....+..++.|...|..+..
T Consensus       472 ~~~~~-~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~  518 (780)
T 2z6g_A          472 SRHQD-AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  518 (780)
T ss_dssp             SSSTT-HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred             hcCch-HHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence            76532 122344556889999999988876555888888888887763

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.55  E-value=3e-13  Score=128.40  Aligned_cols=203  Identities=7%  Similarity=0.034  Sum_probs=162.0

Q ss_pred             cchHHHHHHHhHhhhc--------cCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHH-HHHhccccccccchHH
Q 046820           61 SVEVLEINSKIKTACE--------TQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAA-AFESFSKTCLDENVSV  131 (350)
Q Consensus        61 ~~~v~~lv~~l~~~~~--------~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~-lL~~~~~~~~~~~~~~  131 (350)
                      ...+...+.-|.+...        .++.+.+..|+..|..+... ..|...|.+.|++|.|+. +|.   ++    +..+
T Consensus        27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~---s~----~~~v   98 (296)
T 1xqr_A           27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLE---AG----AAGL   98 (296)
T ss_dssp             HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTT---CS----SHHH
T ss_pred             HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHc---CC----CHHH
Confidence            4456666666765310        23457888999999999975 458888999999999999 996   22    4779


Q ss_pred             HHHHHHHHHhhCC-CChhhHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHH
Q 046820          132 LEEILSTLILLFP-LEGEALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFK  209 (350)
Q Consensus       132 ~e~Al~~L~~~Ls-~~~e~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~  209 (350)
                      ++.|+.+|. ++. -+++.+..+.+.|+++.|+.+|+++ +...|.+|+.+|-+|+...  +.....+.. .|+++.|+.
T Consensus        99 r~~Aa~~Lg-~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~--~~~~~~~~~-~ggi~~L~~  174 (296)
T 1xqr_A           99 RWRAAQLIG-TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ--EAGLLQFLR-LDGFSVLMR  174 (296)
T ss_dssp             HHHHHHHHH-HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTHHHHHHH
T ss_pred             HHHHHHHHH-HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC--cHHHHHHHH-CCCHHHHHH
Confidence            999999998 665 4457788888889999999999976 7899999999999998654  345545534 689999999


Q ss_pred             HhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccc
Q 046820          210 LIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMN  289 (350)
Q Consensus       210 lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~  289 (350)
                      +|+++ ++...+.|..+|.+|+..             .++-+..+. +.|+|+.|+++|...+...+|.|+.+|.+|+..
T Consensus       175 lL~~~-d~~v~~~A~~aLs~L~~~-------------~~~~~~~vv-~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          175 AMQQQ-VQKLKVKSAFLLQNLLVG-------------HPEHKGTLC-SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHSS-CHHHHHHHHHHHHHHHHH-------------CGGGHHHHH-HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHcCC-CHHHHHHHHHHHHHHHhC-------------ChHHHHHHH-HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            99986 778888888888888642             255667775 789999999998888889999999999999986


Q ss_pred             c
Q 046820          290 E  290 (350)
Q Consensus       290 ~  290 (350)
                      .
T Consensus       240 ~  240 (296)
T 1xqr_A          240 F  240 (296)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.42  E-value=3.1e-12  Score=121.37  Aligned_cols=183  Identities=16%  Similarity=0.129  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHH-HHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHH
Q 046820          130 SVLEEILSTLILLFPLEGEALTHLGSASSMGCMIW-FLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALF  208 (350)
Q Consensus       130 ~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~-~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV  208 (350)
                      +-.+.|+..|. .+.-+.++...+...|.++.++. +|.+++.+.|+.|+.+|-+++...  +.++..+-+ .|+++.|+
T Consensus        55 e~k~~Al~~L~-~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n--~~~~~~vv~-~g~l~~Ll  130 (296)
T 1xqr_A           55 QEREGALELLA-DLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV--AAIQEQVLG-LGALRKLL  130 (296)
T ss_dssp             HHHHHHHHHHH-HHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTHHHHHH
T ss_pred             HHHHHHHHHHH-HHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHH-CCCHHHHH
Confidence            34566777777 45444467777778899999999 999999999999999999999764  467666645 79999999


Q ss_pred             HHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820          209 KLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM  288 (350)
Q Consensus       209 ~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~  288 (350)
                      .+|+++.++...+.|+.+|.+++.             ..+++..++. ..++||.|+..|...+...+..|+.+|.++|.
T Consensus       131 ~LL~~~~~~~v~~~A~~ALsnl~~-------------~~~~~~~~~~-~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~  196 (296)
T 1xqr_A          131 RLLDRDACDTVRVKALFAISCLVR-------------EQEAGLLQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV  196 (296)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHT-------------TCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHc-------------CCcHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            999865455555555555555542             3456777775 46899999999988889999999999999998


Q ss_pred             ccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          289 NEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       289 ~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      .+    .+..+.+++.|+++.|+.+|.+. .+..+++|...|..+..
T Consensus       197 ~~----~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~  238 (296)
T 1xqr_A          197 GH----PEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVT  238 (296)
T ss_dssp             HC----GGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHT
T ss_pred             CC----hHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHh
Confidence            64    34777888999999999999876 67899999888876655

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.26  E-value=3.1e-10  Score=119.42  Aligned_cols=249  Identities=10%  Similarity=0.067  Sum_probs=180.0

Q ss_pred             chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhcc-CchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820           62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDN-AAVSVLAAAFESFSKTCLDENVSVLEEILSTLI  140 (350)
Q Consensus        62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~a-Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~  140 (350)
                      ..+..+...+.......+...+.-|+.-|.-++.. +..|..|++. |+++.|+.++..  ..    +..+.-.++.+|.
T Consensus       330 ~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~--~~----d~s~~Ygal~IL~  402 (778)
T 3opb_A          330 INLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKS--QK----MTHCLYGLLVIMA  402 (778)
T ss_dssp             CCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTT--TC----CTTHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhC--CC----CchHHHHHHHHHH
Confidence            34555655555444333444577799999999875 5677788776 999999999972  12    2447788888988


Q ss_pred             hhCCCCh--------------------------------------h-hHhhcccCCcHHHHHHHHccCCHHHHHHHHHHH
Q 046820          141 LLFPLEG--------------------------------------E-ALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLL  181 (350)
Q Consensus       141 ~~Ls~~~--------------------------------------e-~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL  181 (350)
                       ||.-+.                                      + +++.+.+.|+++.|+.++++++...|+.|+.+|
T Consensus       403 -NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL  481 (778)
T 3opb_A          403 -NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRII  481 (778)
T ss_dssp             -HTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred             -HhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence             885211                                      1 455777889999999999999999999999999


Q ss_pred             HHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh--HHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCC
Q 046820          182 TELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP--TATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPL  259 (350)
Q Consensus       182 ~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~--~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~  259 (350)
                      .+|+..   +.++..+.. .|+++.|+.+|.++...  +.+..|+.+|.++..+.+-.+.    +.    | .   ...+
T Consensus       482 ~nLS~d---~~~R~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~----f~----~-~---~~~~  545 (778)
T 3opb_A          482 YNITRS---KNFIPQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI----FK----K-Y---SALN  545 (778)
T ss_dssp             HHHHTS---GGGHHHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH----SS----S-S---CSTT
T ss_pred             HHHcCC---HHHHHHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH----cC----C-C---cccc
Confidence            999865   478888856 89999999999987432  2677888888888643211110    00    1 0   1238


Q ss_pred             ChHHHHHHHhcc--Ch------------hHHHHHHHHHHHHccccccchHHHHHHHHhh-chHHHHHHHHHhcCchHHHH
Q 046820          260 TMPVVVKKILRV--SE------------LATELSVSILWKLCMNEKREEKTAFVEALQV-GAFQKLLVLLQVGCAERTKE  324 (350)
Q Consensus       260 ~v~~lv~~l~~~--S~------------~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~-G~v~~LL~llq~~~t~~ak~  324 (350)
                      +||+|+++|...  +.            ..+-.|+-+|-+|+....+..++.+..++++ |+++.|..+|.++ ++..|+
T Consensus       546 aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~Vrr  624 (778)
T 3opb_A          546 AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQR  624 (778)
T ss_dssp             HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHH
T ss_pred             chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHH
Confidence            999999987621  11            2377899999999997532113467778885 9999998888766 788999


Q ss_pred             HHHHHHHHHHh
Q 046820          325 KASEVLKLMNL  335 (350)
Q Consensus       325 kA~~LLk~l~~  335 (350)
                      .|.+++-.|-.
T Consensus       625 AA~elI~NL~~  635 (778)
T 3opb_A          625 STLELISNMMS  635 (778)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999999986

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.06  E-value=8.8e-09  Score=106.16  Aligned_cols=254  Identities=13%  Similarity=0.140  Sum_probs=182.2

Q ss_pred             cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820           61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI  140 (350)
Q Consensus        61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~  140 (350)
                      .+.|..|+.+++++.   -.+++..|+..|+.++|+.   |. -+.+++.|.|+..|....     .+.+....++.+|+
T Consensus        20 ~etI~~L~~Rl~~~t---l~eDRR~Av~~Lk~~sk~y---~~-~Vg~~~l~~li~~L~~d~-----~D~e~v~~~LetL~   87 (651)
T 3grl_A           20 AETIQKLCDRVASST---LLDDRRNAVRALKSLSKKY---RL-EVGIQAMEHLIHVLQTDR-----SDSEIIGYALDTLY   87 (651)
T ss_dssp             HHHHHHHHHHHHHCC---SHHHHHHHHHHHHHTTTTT---TT-HHHHHTHHHHHHHHHSCT-----TCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHh---HH-HhhhhhHHHHHHHHhccc-----ccHHHHHHHHHHHH
Confidence            356888888887753   4688999999999998764   32 334667999999997322     24778888899887


Q ss_pred             hhCCCChh-----------------hH-hhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhh
Q 046820          141 LLFPLEGE-----------------AL-THLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEG  202 (350)
Q Consensus       141 ~~Ls~~~e-----------------~k-~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g  202 (350)
                      -.+..+++                 +- ..+.+.+.+..|+.+|++.+...|.+++.+|..|..... +.+.+.|=..++
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~-~~~Q~~Il~~p~  166 (651)
T 3grl_A           88 NIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLG-PQVQQIILVSPM  166 (651)
T ss_dssp             HHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSH-HHHHHHHHHSTT
T ss_pred             HHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCc-HHHHHHHHhCcc
Confidence            33342221                 11 133567899999999999999999999999999987643 235555545589


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH--------------------------------HHHHHHHHHHhCCHhh
Q 046820          203 AIEALFKLIEEPISPTATKAALVVIYHTIASS--------------------------------ASALSVLDGICSTDCG  250 (350)
Q Consensus       203 ~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~--------------------------------e~aL~vL~~L~~~~eG  250 (350)
                      .|+.||.+|.+. ...-...|+-.|.+|+..+                                +.||.+|.+|....-.
T Consensus       167 gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s  245 (651)
T 3grl_A          167 GVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS  245 (651)
T ss_dssp             HHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred             cHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence            999999999976 3445666788888886532                                4899999999998666


Q ss_pred             HHHhhcCCCChHHHHHHHhcc------ChhH---HHHHHHHHHHHcccccc--chHHHHHHHHhhchHHHHHHHHHhcC-
Q 046820          251 RENANDKPLTMPVVVKKILRV------SELA---TELSVSILWKLCMNEKR--EEKTAFVEALQVGAFQKLLVLLQVGC-  318 (350)
Q Consensus       251 r~ai~~~~~~v~~lv~~l~~~------S~~~---~E~Av~iL~~Lc~~~~~--~~~~~~~~~~~~G~v~~LL~llq~~~-  318 (350)
                      .+.+..+.++||.|..++...      +++-   .-.++.++..+|..++.  ++..+...+.+.|++..|+.++-+.+ 
T Consensus       246 NQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~  325 (651)
T 3grl_A          246 NQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGV  325 (651)
T ss_dssp             HHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSC
T ss_pred             HHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCC
Confidence            777778889999999866422      1112   23367777777876542  13456666679999999999887654 


Q ss_pred             chHHHHHHHH
Q 046820          319 AERTKEKASE  328 (350)
Q Consensus       319 t~~ak~kA~~  328 (350)
                      +...|..|-.
T Consensus       326 p~~i~~~Al~  335 (651)
T 3grl_A          326 PADILTETIN  335 (651)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            3456655433

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.49  E-value=2.1e-05  Score=68.81  Aligned_cols=189  Identities=14%  Similarity=0.069  Sum_probs=131.8

Q ss_pred             cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820           61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI  140 (350)
Q Consensus        61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~  140 (350)
                      +..+..+++.+.+    ++...+..|+..|..+.           ..+++|.|+.+|.   ++    +..++..|+.+|.
T Consensus        18 ~~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~-----------~~~~~~~L~~~l~---~~----~~~vr~~a~~aL~   75 (211)
T 3ltm_A           18 PEKVEMYIKNLQD----DSYYVRRAAAYALGKIG-----------DERAVEPLIKALK---DE----DAWVRRAAADALG   75 (211)
T ss_dssp             GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTT---CS----CHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHcC----CCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHc---CC----CHHHHHHHHHHHH
Confidence            4567778888765    35677777887776653           2467999999986   22    4778888988887


Q ss_pred             hhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHH
Q 046820          141 LLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTAT  220 (350)
Q Consensus       141 ~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~  220 (350)
                       .+.          .++.++.|+..|++.+...|..|+..|..+.             . +++++.|+.++.++ ++...
T Consensus        76 -~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------------~-~~~~~~L~~~l~d~-~~~vr  129 (211)
T 3ltm_A           76 -QIG----------DERAVEPLIKALKDEDGWVRQSAAVALGQIG-------------D-ERAVEPLIKALKDE-DWFVR  129 (211)
T ss_dssp             -HHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------------C-GGGHHHHHHHTTCS-SHHHH
T ss_pred             -hhC----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------------c-HHHHHHHHHHHhCC-CHHHH
Confidence             332          3457899999999999999999988887663             2 46788899999766 55555


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHH
Q 046820          221 KAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVE  300 (350)
Q Consensus       221 k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~  300 (350)
                      ..|+.+|.++.                         .+..++.+.+.+...++..+..|+.+|..+..            
T Consensus       130 ~~a~~aL~~~~-------------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------  172 (211)
T 3ltm_A          130 IAAAFALGEIG-------------------------DERAVEPLIKALKDEDGWVRQSAADALGEIGG------------  172 (211)
T ss_dssp             HHHHHHHHHHC-------------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------
T ss_pred             HHHHHHHHHcC-------------------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------
Confidence            55555554441                         23467888887766677888899999877743            


Q ss_pred             HHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccC
Q 046820          301 ALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRD  338 (350)
Q Consensus       301 ~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~  338 (350)
                         ..+++.|..+++. ..+..|+.|.+.|..+.....
T Consensus       173 ---~~~~~~L~~~l~d-~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          173 ---ERVRAAMEKLAET-GTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             ---HHHHHHHHHHHHH-CCHHHHHHHHHHHHC------
T ss_pred             ---hhHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCCC
Confidence               1245556666664 478999999999888877444

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.28  E-value=0.00014  Score=63.06  Aligned_cols=188  Identities=13%  Similarity=0.060  Sum_probs=134.4

Q ss_pred             cCCcchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHH
Q 046820           58 PVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILS  137 (350)
Q Consensus        58 p~~~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~  137 (350)
                      +..+.....+++.|.+.    ++..+..|+..|..+..           .++++.|+.+|.   ++    +..++..|+.
T Consensus        10 ~~~~~~~~~~i~~L~~~----~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~---~~----~~~vr~~a~~   67 (201)
T 3ltj_A           10 HTDPEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD-----------ERAVEPLIKALK---DE----DAWVRRAAAD   67 (201)
T ss_dssp             CCCHHHHHHHHHHTTCS----CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT---CS----SHHHHHHHHH
T ss_pred             ccCCcchHHHHHHhcCC----CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc---CC----CHHHHHHHHH
Confidence            34455677788888773    66778888888776532           367999999995   32    4678888888


Q ss_pred             HHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820          138 TLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP  217 (350)
Q Consensus       138 ~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~  217 (350)
                      +|. .+.          .+..++.|+..|.+.+...|..|+..|..+.             . +++++.|+.++.++ ++
T Consensus        68 ~L~-~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------------~-~~~~~~L~~~l~d~-~~  121 (201)
T 3ltj_A           68 ALG-QIG----------DERAVEPLIKALKDEDGWVRQSAAVALGQIG-------------D-ERAVEPLIKALKDE-DW  121 (201)
T ss_dssp             HHH-HHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------------C-GGGHHHHHHHTTCS-SH
T ss_pred             HHH-hhC----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------------c-HHHHHHHHHHHcCC-CH
Confidence            887 232          3468899999999999999999999887653             2 46788899999766 55


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHH
Q 046820          218 TATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTA  297 (350)
Q Consensus       218 ~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~  297 (350)
                      .....|..+|..+.                         .+..++.+.+.+...++..+..|+.+|..+..      .  
T Consensus       122 ~vr~~a~~aL~~~~-------------------------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------~--  168 (201)
T 3ltj_A          122 FVRIAAAFALGEIG-------------------------DERAVEPLIKALKDEDGWVRQSAADALGEIGG------E--  168 (201)
T ss_dssp             HHHHHHHHHHHHHT-------------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------H--
T ss_pred             HHHHHHHHHHHHhC-------------------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------h--
Confidence            55555555544431                         24567888888777777888999999977743      1  


Q ss_pred             HHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820          298 FVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN  334 (350)
Q Consensus       298 ~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~  334 (350)
                             .+++.|..+++. ..+..|..|.+.|..+.
T Consensus       169 -------~~~~~L~~~l~d-~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          169 -------RVRAAMEKLAET-GTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------HHHHHHHHHHHH-CCHHHHHHHHHHHHHCC
T ss_pred             -------hHHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence                   145556666664 47889999988887654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.23  E-value=0.00019  Score=74.16  Aligned_cols=253  Identities=13%  Similarity=0.091  Sum_probs=169.8

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCcccc------------------chhhccCchHHHHHHHHhcccccc
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNK------------------SCIVDNAAVSVLAAAFESFSKTCL  125 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR------------------~~i~~aGai~~Lv~lL~~~~~~~~  125 (350)
                      +..++.-|+...  .|.+....+|..|..+...++...                  .++.+.+.|+.|+.+|.   ..  
T Consensus        62 l~~li~~L~~d~--~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~---~~--  134 (651)
T 3grl_A           62 MEHLIHVLQTDR--SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE---EF--  134 (651)
T ss_dssp             HHHHHHHHHSCT--TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT---CC--
T ss_pred             HHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc---Cc--
Confidence            445555555432  455556667777766655433211                  23556688999999996   22  


Q ss_pred             ccchHHHHHHHHHHHhhCCCCh-hhHhhc-ccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhH
Q 046820          126 DENVSVLEEILSTLILLFPLEG-EALTHL-GSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGA  203 (350)
Q Consensus       126 ~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i-~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~  203 (350)
                        +..++-.++..|..++.... +.++.| ..+++++.|+.+|.......|-.|..+|.+|+..+  ++....+.- .|+
T Consensus       135 --df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n--~~iQklVAF-Ena  209 (651)
T 3grl_A          135 --DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN--GAIQKIVAF-ENA  209 (651)
T ss_dssp             --CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTH
T ss_pred             --cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC--HHHHHHHHH-hcc
Confidence              35677888887774333333 356655 57899999999999888999999999999999875  577777744 899


Q ss_pred             HHHHHHHhcCCC---ChHHHHHHHHHHHHhhhhH-------------------------------------HHHHHHHHH
Q 046820          204 IEALFKLIEEPI---SPTATKAALVVIYHTIASS-------------------------------------ASALSVLDG  243 (350)
Q Consensus       204 i~~LV~lL~~~~---~~~a~k~Al~aL~~L~~~~-------------------------------------e~aL~vL~~  243 (350)
                      |+.|+++++...   ....+.|++.+|.||...|                                     -.++.++..
T Consensus       210 Fe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrl  289 (651)
T 3grl_A          210 FERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRV  289 (651)
T ss_dssp             HHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence            999999998532   2467899999999996422                                     147888888


Q ss_pred             HhCCH-------hhHHHhhcCCCChHHHHHHHhcc--ChhHHHHHHHHHHHHccccccchHHHHHHHHhh--------ch
Q 046820          244 ICSTD-------CGRENANDKPLTMPVVVKKILRV--SELATELSVSILWKLCMNEKREEKTAFVEALQV--------GA  306 (350)
Q Consensus       244 L~~~~-------eGr~ai~~~~~~v~~lv~~l~~~--S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~--------G~  306 (350)
                      |+.-.       ....++ .+.|++..+++.++..  +..-+..|..++..+++.+.    .......+.        .+
T Consensus       290 Lv~~~~~~~~t~~nQ~~~-~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~----~~Q~~fa~~~vp~~~~~p~  364 (651)
T 3grl_A          290 LVSPNNPPGATSSCQKAM-FQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ----VNQDYFASVNAPSNPPRPA  364 (651)
T ss_dssp             HTCTTSCHHHHHHHHHHH-HHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH----HHHHHHHHCEESSSSCEEH
T ss_pred             HhCCCCCCCCCHHHHHHH-HHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH----HHHHHHhhccCCCCCCcCh
Confidence            87741       123345 4788899999988853  56677889999999998653    344444433        22


Q ss_pred             HHHHHHHH-HhcCchHHHHHHHHHHHHH
Q 046820          307 FQKLLVLL-QVGCAERTKEKASEVLKLM  333 (350)
Q Consensus       307 v~~LL~ll-q~~~t~~ak~kA~~LLk~l  333 (350)
                      +-.+|..+ .+--+...|--|...++.+
T Consensus       365 li~lL~~~~~~~~~~~lR~Aa~~cl~ay  392 (651)
T 3grl_A          365 IVVLLMSMVNERQPFVLRCAVLYCFQCF  392 (651)
T ss_dssp             HHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            33333222 2222456676666666554

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.98  E-value=5.4e-07  Score=65.19  Aligned_cols=24  Identities=8%  Similarity=0.230  Sum_probs=22.3

Q ss_pred             cccccccCCccc-CCCCCCcccCCccc
Q 046820           25 GASLIEKDPVTT-TPRNGITYDRVNIL   50 (350)
Q Consensus        25 ~~~eiM~DPVtl-~~~TG~TYDR~sIe   50 (350)
                      .+.++|+|||++ .  ||+||||++|+
T Consensus         8 Is~~~m~dPV~~~~--sG~~yer~~I~   32 (61)
T 2bay_A            8 ISGKVPRRPVLSPK--SRTIFEKSLLE   32 (61)
T ss_dssp             TTCSCCSSEEEETT--TTEEEEHHHHH
T ss_pred             CCCCCCCCCEEeCC--CCcEEcHHHHH
Confidence            468999999999 9  99999999998

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.95  E-value=5.1e-05  Score=79.33  Aligned_cols=198  Identities=10%  Similarity=0.093  Sum_probs=133.7

Q ss_pred             chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHH-HHHhccccccccchHHHHHHHHHHH
Q 046820           62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAA-AFESFSKTCLDENVSVLEEILSTLI  140 (350)
Q Consensus        62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~-lL~~~~~~~~~~~~~~~e~Al~~L~  140 (350)
                      ..+..++++|+++    |+..+..|+..|..++. ++.+|+.+...|+|+.++. +|.   +    .+.+++++|..+|.
T Consensus        34 ~~i~Pll~~L~S~----~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~---D----~~~~Vr~~A~gaLr  101 (684)
T 4gmo_A           34 DKILPVLKDLKSP----DAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLT---D----NNIDSRAAGWEILK  101 (684)
T ss_dssp             HTTHHHHHHHSSS----CCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTT---C----SCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHcCCC----CHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcC---C----CCHHHHHHHHHHHH
Confidence            3566788888764    67889999999999995 7889999888888876655 553   2    35789999999998


Q ss_pred             hhCCCCh--hhHhhcccCCcHHHHHHHHccCC---------------------HHHHHHHHHHHHHHhcCCCchhHHhhh
Q 046820          141 LLFPLEG--EALTHLGSASSMGCMIWFLNSGD---------------------LSRRRNAVLLLTELVSSDSDQRKVNVL  197 (350)
Q Consensus       141 ~~Ls~~~--e~k~~i~~~~~l~~Lv~~L~~gs---------------------~~~r~~Aa~lL~~Ls~~~~~~~~~~~I  197 (350)
                       ||+.+.  +....+...+.+.+|..+|++..                     .+.-.++..+|..|+...+  .....+
T Consensus       102 -nL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~--~~~~~v  178 (684)
T 4gmo_A          102 -VLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD--EIHEAV  178 (684)
T ss_dssp             -HHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHH
T ss_pred             -HHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHH
Confidence             887553  45556677889999999886521                     1222467788888886542  555566


Q ss_pred             hchhhHHHHHHHHhcCC--CChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCC-ChHHHHHHHhccChh
Q 046820          198 SENEGAIEALFKLIEEP--ISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPL-TMPVVVKKILRVSEL  274 (350)
Q Consensus       198 g~~~g~i~~LV~lL~~~--~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~-~v~~lv~~l~~~S~~  274 (350)
                      .. .+.++.|+.+|.+.  .+......|+.+|+.|+..+..             -...+..+.. .+-.++-.+...+..
T Consensus       179 ~~-~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~-------------~~~~i~~~~~~~~~~~ll~~~~~~~~  244 (684)
T 4gmo_A          179 AT-KQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLK-------------VGQAITDDQETHVYDVLLKLATGTDP  244 (684)
T ss_dssp             HT-CHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHH-------------HHHHHHTCCSSCHHHHHHHHHHSSCT
T ss_pred             Hh-cccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHH-------------HHHHHHhcchHHHHHHHHHHhcCCcH
Confidence            45 68999999888542  3456778889999999875543             2233332221 111122223344444


Q ss_pred             HHHHHHHHHHHHcc
Q 046820          275 ATELSVSILWKLCM  288 (350)
Q Consensus       275 ~~E~Av~iL~~Lc~  288 (350)
                      .+-.+.++|+++..
T Consensus       245 ~~~la~giL~Ni~~  258 (684)
T 4gmo_A          245 RAVMACGVLHNVFT  258 (684)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHhh
Confidence            56678889988753

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.75  E-value=0.0022  Score=55.71  Aligned_cols=154  Identities=16%  Similarity=0.129  Sum_probs=105.8

Q ss_pred             ccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 046820          106 DNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELV  185 (350)
Q Consensus       106 ~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls  185 (350)
                      ..+.++.|+.+|.   ++    +..++..|+..|.. +.          .+..++.|+..|.+++...|..|+..|-.+.
T Consensus        17 ~~~~~~~L~~~L~---~~----~~~vR~~A~~~L~~-~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~   78 (211)
T 3ltm_A           17 DPEKVEMYIKNLQ---DD----SYYVRRAAAYALGK-IG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG   78 (211)
T ss_dssp             CGGGHHHHHHHTT---CS----SHHHHHHHHHHHHH-HC----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred             CHhHHHHHHHHHc---CC----CHHHHHHHHHHHHH-hC----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence            3578999999996   32    47788999888872 22          2468999999999999999999988877653


Q ss_pred             cCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHH
Q 046820          186 SSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVV  265 (350)
Q Consensus       186 ~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv  265 (350)
                                   . +++++.|+++|.++ ++.....|+.+|..+.                         ....++.|+
T Consensus        79 -------------~-~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~-------------------------~~~~~~~L~  118 (211)
T 3ltm_A           79 -------------D-ERAVEPLIKALKDE-DGWVRQSAAVALGQIG-------------------------DERAVEPLI  118 (211)
T ss_dssp             -------------C-GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC-------------------------CGGGHHHHH
T ss_pred             -------------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-------------------------cHHHHHHHH
Confidence                         2 56788999999876 5555555555444432                         234678888


Q ss_pred             HHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 046820          266 KKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM  333 (350)
Q Consensus       266 ~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l  333 (350)
                      +.+...++..+..|+.+|..+...               .+++.|+.+++ +..+..|..|...|..+
T Consensus       119 ~~l~d~~~~vr~~a~~aL~~~~~~---------------~~~~~L~~~l~-d~~~~vr~~a~~aL~~~  170 (211)
T 3ltm_A          119 KALKDEDWFVRIAAAFALGEIGDE---------------RAVEPLIKALK-DEDGWVRQSAADALGEI  170 (211)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHCCG---------------GGHHHHHHHTT-CSSHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHc-CCCHHHHHHHHHHHHHh
Confidence            877667778888888888777432               23444554443 33556666665555544

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=97.68  E-value=4.1e-06  Score=64.44  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=26.9

Q ss_pred             cCC-ccccccccccccCCcccCCCCCCcccCCccc
Q 046820           17 EQP-ARKETGASLIEKDPVTTTPRNGITYDRVNIL   50 (350)
Q Consensus        17 ~~~-~~~~~~~~eiM~DPVtl~~~TG~TYDR~sIe   50 (350)
                      ++| ...--...++|+|||++.  +|+||||.+|+
T Consensus        10 ~~p~~~~CpI~~~~m~dPV~~~--cGhtf~r~~I~   42 (85)
T 2kr4_A           10 DAPDEFRDPLMDTLMTDPVRLP--SGTVMDRSIIL   42 (85)
T ss_dssp             TCCTTTBCTTTCSBCSSEEECT--TSCEEEHHHHH
T ss_pred             cCchheECcccCchhcCCeECC--CCCEECHHHHH
Confidence            345 344567889999999999  99999999998

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.67  E-value=0.0037  Score=56.77  Aligned_cols=30  Identities=7%  Similarity=0.001  Sum_probs=19.7

Q ss_pred             CCChHHHHHHHhccChhHHHHHHHHHHHHc
Q 046820          258 PLTMPVVVKKILRVSELATELSVSILWKLC  287 (350)
Q Consensus       258 ~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc  287 (350)
                      +..++.|++.+...++..+..|+..|..+.
T Consensus       158 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  187 (280)
T 1oyz_A          158 KATIPLLINLLKDPNGDVRNWAAFAININK  187 (280)
T ss_dssp             -CCHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence            346777777766666666777777776664

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=97.61  E-value=6.4e-06  Score=65.44  Aligned_cols=33  Identities=27%  Similarity=0.420  Sum_probs=27.6

Q ss_pred             hcCC-ccccccccccccCCcccCCCCCCcccCCccc
Q 046820           16 KEQP-ARKETGASLIEKDPVTTTPRNGITYDRVNIL   50 (350)
Q Consensus        16 ~~~~-~~~~~~~~eiM~DPVtl~~~TG~TYDR~sIe   50 (350)
                      .++| .+..-...++|+|||+++  +|+||||.+|+
T Consensus        24 ~~~p~~~~CpI~~~~m~dPV~~~--cGhtf~r~~I~   57 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLMTDPVRLP--SGTIMDRSIIL   57 (100)
T ss_dssp             SSCSTTTBCTTTCSBCSSEEEET--TTEEEEHHHHH
T ss_pred             ccCcHhhCCcCccCcccCCeECC--CCCEEchHHHH
Confidence            3455 345567889999999999  99999999998

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.61  E-value=0.0039  Score=53.70  Aligned_cols=153  Identities=16%  Similarity=0.113  Sum_probs=103.2

Q ss_pred             cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhc
Q 046820          107 NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVS  186 (350)
Q Consensus       107 aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~  186 (350)
                      .+..+.++.+|.   ++    +..++..|+..|. .+.          ..+.++.|+..|.+++...|..|+..|..+. 
T Consensus        13 ~~~~~~~i~~L~---~~----~~~vr~~A~~~L~-~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-   73 (201)
T 3ltj_A           13 PEKVEMYIKNLQ---DD----SYYVRRAAAYALG-KIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG-   73 (201)
T ss_dssp             HHHHHHHHHHTT---CS----CHHHHHHHHHHHH-HHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-
T ss_pred             CcchHHHHHHhc---CC----CHHHHHHHHHHHH-hcC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-
Confidence            356788888885   33    4778899988887 232          2357899999999999999999888876652 


Q ss_pred             CCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHH
Q 046820          187 SDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVK  266 (350)
Q Consensus       187 ~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~  266 (350)
                                  . +++++.|+.+|.++ ++.....|+.+|..+.                         ...+++.+++
T Consensus        74 ------------~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~-------------------------~~~~~~~L~~  114 (201)
T 3ltj_A           74 ------------D-ERAVEPLIKALKDE-DGWVRQSAAVALGQIG-------------------------DERAVEPLIK  114 (201)
T ss_dssp             ------------C-GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC-------------------------CGGGHHHHHH
T ss_pred             ------------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-------------------------cHHHHHHHHH
Confidence                        2 46789999999876 5555555555544431                         2346788888


Q ss_pred             HHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 046820          267 KILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLM  333 (350)
Q Consensus       267 ~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l  333 (350)
                      .+...++..+..|+.+|..+...               .+++.|..++.. ..+..|..|...|..+
T Consensus       115 ~l~d~~~~vr~~a~~aL~~~~~~---------------~~~~~L~~~l~d-~~~~vr~~A~~aL~~~  165 (201)
T 3ltj_A          115 ALKDEDWFVRIAAAFALGEIGDE---------------RAVEPLIKALKD-EDGWVRQSAADALGEI  165 (201)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHTCG---------------GGHHHHHHHTTC-SSHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence            77666777788888888766431               234445444442 3456666665555544

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=97.56  E-value=7.4e-06  Score=87.64  Aligned_cols=34  Identities=26%  Similarity=0.237  Sum_probs=28.6

Q ss_pred             hhcCCcccc-ccccccccCCcccCCCCC-CcccCCccc
Q 046820           15 RKEQPARKE-TGASLIEKDPVTTTPRNG-ITYDRVNIL   50 (350)
Q Consensus        15 ~~~~~~~~~-~~~~eiM~DPVtl~~~TG-~TYDR~sIe   50 (350)
                      -.++|+.-. --+.+||+|||+++  || +||||++|+
T Consensus       885 ~~~iP~~F~cPIs~~lM~DPVilp--sG~~TydR~~I~  920 (968)
T 3m62_A          885 YGDVPDEFLDPLMYTIMKDPVILP--ASKMNIDRSTIK  920 (968)
T ss_dssp             HCCSCGGGBCTTTCSBCSSEEECT--TTCCEEEHHHHH
T ss_pred             ccCCcHHhCCcchhhHHhCCeEcC--CCCEEECHHHHH
Confidence            367787654 45679999999999  97 899999998

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=97.56  E-value=1.1e-05  Score=63.90  Aligned_cols=32  Identities=25%  Similarity=0.237  Sum_probs=27.1

Q ss_pred             cCC-ccccccccccccCCcccCCCCC-CcccCCccc
Q 046820           17 EQP-ARKETGASLIEKDPVTTTPRNG-ITYDRVNIL   50 (350)
Q Consensus        17 ~~~-~~~~~~~~eiM~DPVtl~~~TG-~TYDR~sIe   50 (350)
                      ++| .+..-...++|+|||++.  +| +||||..|+
T Consensus        18 ~~p~~~~CpI~~~~m~dPV~~~--cG~htf~r~cI~   51 (98)
T 1wgm_A           18 DACDEFLDPIMSTLMCDPVVLP--SSRVTVDRSTIA   51 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECT--TTCCEEEHHHHH
T ss_pred             cCcHhcCCcCccccccCCeECC--CCCeEECHHHHH
Confidence            445 355567899999999999  99 999999998

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.52  E-value=0.0017  Score=67.79  Aligned_cols=206  Identities=12%  Similarity=0.072  Sum_probs=132.4

Q ss_pred             chHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHH-HHHccCCHHHHHHHHHHHHHHhcC
Q 046820          109 AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMI-WFLNSGDLSRRRNAVLLLTELVSS  187 (350)
Q Consensus       109 ai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv-~~L~~gs~~~r~~Aa~lL~~Ls~~  187 (350)
                      .|.+++..|.+   +    ++..++.|+.+|. +|.-+.+.++.+...+.+..++ .+|...+.+.|..|+.+|.+|+..
T Consensus        35 ~i~Pll~~L~S---~----~~~~r~~A~~al~-~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~  106 (684)
T 4gmo_A           35 KILPVLKDLKS---P----DAKSRTTAAGAIA-NIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE  106 (684)
T ss_dssp             TTHHHHHHHSS---S----CCSHHHHHHHHHH-HHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCC---C----CHHHHHHHHHHHH-HHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            35556677762   2    3557899999999 7876667777777777877765 456667999999999999999865


Q ss_pred             CCchhHHhhhhchhhHHHHHHHHhcCC---------CChHHHHHHHHHHHHhhhhHHHHHHHHHHHhC-CHhhHHHhhcC
Q 046820          188 DSDQRKVNVLSENEGAIEALFKLIEEP---------ISPTATKAALVVIYHTIASSASALSVLDGICS-TDCGRENANDK  257 (350)
Q Consensus       188 ~~~~~~~~~Ig~~~g~i~~LV~lL~~~---------~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~-~~eGr~ai~~~  257 (350)
                      .. ++.+..+-+ .|++++|..+++..         ......+.....++.+.   +.++.+|-.||. ..+...++. .
T Consensus       107 ~g-~d~~~~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~lL~~L~e~s~~~~~~v~-~  180 (684)
T 4gmo_A          107 EE-ADFCVHLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDIT---GSLLVLIGLLALARDEIHEAVA-T  180 (684)
T ss_dssp             SC-HHHHHHHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHH---HHHHHHHHHHHHHCHHHHHHHH-T
T ss_pred             cC-chHHHHHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHH---HHHHHHHHHHHhCCHHHHHHHH-h
Confidence            43 466766645 89999999998631         00112223333344332   356667777775 345556664 5


Q ss_pred             CCChHHHHHHHhccC---hhHHHHHHHHHHHHccccccchHHHHHHHHhhch--HHHHHHHHHhcCchHHHHHHHHHHHH
Q 046820          258 PLTMPVVVKKILRVS---ELATELSVSILWKLCMNEKREEKTAFVEALQVGA--FQKLLVLLQVGCAERTKEKASEVLKL  332 (350)
Q Consensus       258 ~~~v~~lv~~l~~~S---~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~--v~~LL~llq~~~t~~ak~kA~~LLk~  332 (350)
                      .++++.++..+....   ..-...|...|+.++..+    ....+.....|.  +-.++..+..+ ++..|.-+..+|..
T Consensus       181 ~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn----~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~N  255 (684)
T 4gmo_A          181 KQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDN----LKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHN  255 (684)
T ss_dssp             CHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTC----HHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccC----HHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHh
Confidence            688999999886533   356778888888888754    446666665553  22233333333 23334555555554


Q ss_pred             H
Q 046820          333 M  333 (350)
Q Consensus       333 l  333 (350)
                      +
T Consensus       256 i  256 (684)
T 4gmo_A          256 V  256 (684)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.52  E-value=0.021  Score=51.69  Aligned_cols=119  Identities=9%  Similarity=0.051  Sum_probs=64.1

Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHH
Q 046820          157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS  236 (350)
Q Consensus       157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~  236 (350)
                      +.++.|+.+|++.+...|..|+..|..+...           . +.+++.|+.++.++ ++.....|+.+|.++      
T Consensus       159 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~-~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~------  219 (280)
T 1oyz_A          159 ATIPLLINLLKDPNGDVRNWAAFAININKYD-----------N-SDIRDCFVEMLQDK-NEEVRIEAIIGLSYR------  219 (280)
T ss_dssp             CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----------C-HHHHHHHHHHTTCS-CHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-----------c-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHh------
Confidence            3566666666666666666666666544211           1 34556666666544 333333333333222      


Q ss_pred             HHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHh
Q 046820          237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQV  316 (350)
Q Consensus       237 aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~  316 (350)
                              .           .+.+++.+++.+....  .+..|+.+|..+..               ..+++.|..+++.
T Consensus       220 --------~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------~~~~~~L~~~l~~  263 (280)
T 1oyz_A          220 --------K-----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD---------------KTLLPVLDTMLYK  263 (280)
T ss_dssp             --------T-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------GGGHHHHHHHHTT
T ss_pred             --------C-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------hhhhHHHHHHHhc
Confidence                    1           3456788887775422  45666666655533               2357777777765


Q ss_pred             cCchHHHHHHHHHH
Q 046820          317 GCAERTKEKASEVL  330 (350)
Q Consensus       317 ~~t~~ak~kA~~LL  330 (350)
                      ...+....++.+.|
T Consensus       264 ~~~~~~~~~~~~~l  277 (280)
T 1oyz_A          264 FDDNEIITSAIDKL  277 (280)
T ss_dssp             SSCCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHh
Confidence            44455666654444

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=97.26  E-value=4.4e-05  Score=66.89  Aligned_cols=34  Identities=32%  Similarity=0.465  Sum_probs=27.9

Q ss_pred             hhcCCcccc-ccccccccCCcccCCCCCCcccCCccc
Q 046820           15 RKEQPARKE-TGASLIEKDPVTTTPRNGITYDRVNIL   50 (350)
Q Consensus        15 ~~~~~~~~~-~~~~eiM~DPVtl~~~TG~TYDR~sIe   50 (350)
                      ..++|+... --+.++|+|||+++  +|+||||.+|+
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~--~Ghtfer~~I~  134 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITP--SGITYDRKDIE  134 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECT--TSCEEEHHHHH
T ss_pred             ccCCcHhhcccCccccCCCCeECC--CCCEECHHHHH
Confidence            445665443 45789999999999  99999999998

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.17  E-value=0.0089  Score=63.18  Aligned_cols=234  Identities=10%  Similarity=0.120  Sum_probs=140.3

Q ss_pred             CChhHHHHHHHHHHHHHhcCccccc--hhhc--cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhc
Q 046820           78 QDQVGCKDLVAKIKEWAKESESNKS--CIVD--NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHL  153 (350)
Q Consensus        78 ~~~~~~~~Al~~L~~Lak~s~~nR~--~i~~--aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i  153 (350)
                      ++...+..++..|..++++.+..-.  .+..  .+++|.|+.++.   ++    +..++..|+.+|...+.....  ...
T Consensus       140 ~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~---~~----~~~vR~~A~~aL~~~~~~~~~--~~~  210 (852)
T 4fdd_A          140 EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK---HS----SPKIRSHAVACVNQFIISRTQ--ALM  210 (852)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTT---CS----SHHHHHHHHHHHHTTTTTTCH--HHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhc---CC----CHHHHHHHHHHHHHHHhcccH--HHH
Confidence            4556677788888888876543210  1100  134455454443   22    477899999999833322211  111


Q ss_pred             c-cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820          154 G-SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA  232 (350)
Q Consensus       154 ~-~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~  232 (350)
                      . -...++.+...+..++.+.|..|+..|..|+.... +.....+   .++++.++.++++. ++.....|+..+..++.
T Consensus       211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~-~~~~~~l---~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~  285 (852)
T 4fdd_A          211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM-DRLLPHM---HNIVEYMLQRTQDQ-DENVALEACEFWLTLAE  285 (852)
T ss_dssp             TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH-HHHGGGH---HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHH---HHHHHHHHHHccCC-cHHHHHHHHHHHHHHhc
Confidence            1 13578888888888899999999999999986532 1122222   57888899998875 66777888888887763


Q ss_pred             hH----------HHHHHHH-----------------------------------------HHHhCCHhhHHHhhcCCCCh
Q 046820          233 SS----------ASALSVL-----------------------------------------DGICSTDCGRENANDKPLTM  261 (350)
Q Consensus       233 ~~----------e~aL~vL-----------------------------------------~~L~~~~eGr~ai~~~~~~v  261 (350)
                      ..          ...+.+|                                         ..|+..- | ..+.  +..+
T Consensus       286 ~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~-~-~~~~--~~l~  361 (852)
T 4fdd_A          286 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY-R-DELL--PHIL  361 (852)
T ss_dssp             STTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH-G-GGGH--HHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc-c-HHHH--HHHH
Confidence            10          1222222                                         2222211 1 0110  1123


Q ss_pred             HHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          262 PVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       262 ~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      |.+.+.+...+...++.|+.+|..++...+    .... ..-.++++.|+..++ +..++.|..|...|..+..
T Consensus       362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~----~~~~-~~l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~  429 (852)
T 4fdd_A          362 PLLKELLFHHEWVVKESGILVLGAIAEGCM----QGMI-PYLPELIPHLIQCLS-DKKALVRSITCWTLSRYAH  429 (852)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHTTTTTH----HHHG-GGHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcch----HHHH-HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence            444444444567889999999999988653    1211 123456777776665 4478999988888876665

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.09  E-value=5.7e-05  Score=58.98  Aligned_cols=28  Identities=25%  Similarity=0.200  Sum_probs=24.0

Q ss_pred             cccccccccccCCccc-CCCCCCcccCCccc
Q 046820           21 RKETGASLIEKDPVTT-TPRNGITYDRVNIL   50 (350)
Q Consensus        21 ~~~~~~~eiM~DPVtl-~~~TG~TYDR~sIe   50 (350)
                      +.--..+++|+|||++ .  .||||+|.+|+
T Consensus         8 ~~CPI~~~~~~dPV~~~~--cGh~f~r~cI~   36 (94)
T 2yu4_A            8 FTCPITKEEMKKPVKNKV--CGHTYEEDAIV   36 (94)
T ss_dssp             CBCTTTCSBCSSEEEESS--SCCEEEHHHHH
T ss_pred             eECcCcCchhcCCEEcCC--CCCeecHHHHH
Confidence            3444578999999999 7  89999999998

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.80  E-value=0.00027  Score=64.93  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=27.7

Q ss_pred             hcCCcccc-ccccccccCCcccCCCCCCcccCCccc
Q 046820           16 KEQPARKE-TGASLIEKDPVTTTPRNGITYDRVNIL   50 (350)
Q Consensus        16 ~~~~~~~~-~~~~eiM~DPVtl~~~TG~TYDR~sIe   50 (350)
                      .++|+... .-..++|+|||+++  +||||+|.+|+
T Consensus       203 ~~~~~~~~c~i~~~~~~dPv~~~--~gh~f~~~~i~  236 (281)
T 2c2l_A          203 RDIPDYLCGKISFELMREPCITP--SGITYDRKDIE  236 (281)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECS--SCCEEETTHHH
T ss_pred             CCCCcccCCcCcCCHhcCCeECC--CCCEECHHHHH
Confidence            45665443 57889999999999  99999999998

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=96.79  E-value=0.062  Score=56.65  Aligned_cols=232  Identities=15%  Similarity=0.084  Sum_probs=134.4

Q ss_pred             CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhH-hhcc-
Q 046820           78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEAL-THLG-  154 (350)
Q Consensus        78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k-~~i~-  154 (350)
                      .+...+..+...+..+++....+.    -.+++|.|+..+.   ++    +..+++.++.+|..... ..+... ..+. 
T Consensus       102 ~~~~vr~~~a~~i~~ia~~~~~~~----wp~ll~~L~~~l~---~~----~~~~r~~al~~L~~i~~~~~~~~~~~~~~~  170 (852)
T 4fdd_A          102 SSPLIRATVGILITTIASKGELQN----WPDLLPKLCSLLD---SE----DYNTCEGAFGALQKICEDSAEILDSDVLDR  170 (852)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTTTT----CTTHHHHHHHHHS---CS----SHHHHHHHHHHHHHHHHHHTTHHHHCSSSS
T ss_pred             CCHHHHHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHc---CC----CHHHHHHHHHHHHHHHHHhHHHhchhhhcc
Confidence            345566778888888887753221    2478899998885   22    35678888888873221 111100 0110 


Q ss_pred             -cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 046820          155 -SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS  233 (350)
Q Consensus       155 -~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~  233 (350)
                       -...++.++..|++.+.+.|..|+..|..+..... .....   ...++++.|+.++.++ ++...+.|..+|..++..
T Consensus       171 ~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~-~~~~~---~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~  245 (852)
T 4fdd_A          171 PLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT-QALML---HIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEV  245 (852)
T ss_dssp             CHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC-HHHHT---SHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc-HHHHH---HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHh
Confidence             12356666666777789999999999988765432 12222   2368999999999876 677888899999888642


Q ss_pred             H---------------------------HHHHHHHHHHhCCHhhHHHhhcC-CCChHHHHHHHh---------ccC----
Q 046820          234 S---------------------------ASALSVLDGICSTDCGRENANDK-PLTMPVVVKKIL---------RVS----  272 (350)
Q Consensus       234 ~---------------------------e~aL~vL~~L~~~~eGr~ai~~~-~~~v~~lv~~l~---------~~S----  272 (350)
                      .                           ..|+..+..++.....+..+... ...+|.+++.|.         +..    
T Consensus       246 ~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed  325 (852)
T 4fdd_A          246 RMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG  325 (852)
T ss_dssp             CHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence            0                           25566666666543333322100 022455555441         011    


Q ss_pred             ---------hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820          273 ---------ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN  334 (350)
Q Consensus       273 ---------~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~  334 (350)
                               ...+..|+.+|-.++...++   ...     ..+++.+...+++. .++.|+-|...|..+.
T Consensus       326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-----~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~  387 (852)
T 4fdd_A          326 SGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-----PHILPLLKELLFHH-EWVVKESGILVLGAIA  387 (852)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHHHGG---GGH-----HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTT
T ss_pred             cccccccccchHHHHHHHHHHHHHHhccH---HHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence                     12255677777777765431   111     12455555555543 5777777666665554

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=96.75  E-value=0.073  Score=54.10  Aligned_cols=228  Identities=14%  Similarity=0.097  Sum_probs=131.3

Q ss_pred             HHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh
Q 046820           68 NSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG  147 (350)
Q Consensus        68 v~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~  147 (350)
                      +..+.......++..+..|+..+..+.+.+++   .+.+.|++|.|..+|.   +.    ++.++..|+.+|.. +...+
T Consensus       123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~---d~----d~~V~~~A~~aL~~-i~~~~  191 (591)
T 2vgl_B          123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIA---DS----NPMVVANAVAALSE-ISESH  191 (591)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTS---CS----CHHHHHHHHHHHHH-HTTSC
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhC---CC----ChhHHHHHHHHHHH-HHhhC
Confidence            33343333335677788899999999886543   4445688899999885   22    47788999888873 32111


Q ss_pred             -hh----------Hhhcc---c------------------------CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCC-
Q 046820          148 -EA----------LTHLG---S------------------------ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSD-  188 (350)
Q Consensus       148 -e~----------k~~i~---~------------------------~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~-  188 (350)
                       +.          ..++.   +                        ...++.+...|++.+...+..|+.++..+.... 
T Consensus       192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~  271 (591)
T 2vgl_B          192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP  271 (591)
T ss_dssp             CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred             CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence             10          01110   0                        124555555566677788889999999886311 


Q ss_pred             CchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh----------------------HHHHHHHHHHHhC
Q 046820          189 SDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS----------------------SASALSVLDGICS  246 (350)
Q Consensus       189 ~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~----------------------~e~aL~vL~~L~~  246 (350)
                      .+++....+  ...+.+.|+.++.  .++..+..|+.+|..++..                      ...++.+|..++.
T Consensus       272 ~~~~~~~~~--~~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~  347 (591)
T 2vgl_B          272 KDSDYYNML--LKKLAPPLVTLLS--GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLAS  347 (591)
T ss_dssp             BTTBSHHHH--HHHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHH--HHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCC
Confidence            001222222  1466788887775  3677788889998888641                      1467777777665


Q ss_pred             CHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHH
Q 046820          247 TDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKA  326 (350)
Q Consensus       247 ~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA  326 (350)
                      .. +...+      ++.+.+.+......-+..++..+..+|...++    .     ....++.|+.++...+ +..+..+
T Consensus       348 ~~-nv~~i------v~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~----~-----~~~~v~~Ll~ll~~~~-~~v~~e~  410 (591)
T 2vgl_B          348 QA-NIAQV------LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ----S-----AERCVSTLLDLIQTKV-NYVVQEA  410 (591)
T ss_dssp             SS-THHHH------HHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----H-----HHHHHHHHHHHHHTCC-HHHHHHH
T ss_pred             hh-hHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----H-----HHHHHHHHHHHHcccc-hHHHHHH
Confidence            32 22211      23333333344556677777777777765431    1     1224555565555443 3334433


Q ss_pred             H
Q 046820          327 S  327 (350)
Q Consensus       327 ~  327 (350)
                      .
T Consensus       411 i  411 (591)
T 2vgl_B          411 I  411 (591)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=96.46  E-value=0.085  Score=50.40  Aligned_cols=247  Identities=9%  Similarity=0.031  Sum_probs=140.0

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhc--cCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVD--NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL  141 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~--aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~  141 (350)
                      +..++..+.+..  .++..+..++..|..++++....  .+..  ..+++.++.+|.   +.  +.+..++..|+.+|..
T Consensus       130 l~~L~~~l~~~~--~~~~~r~~al~~l~~l~~~~~~~--~~~~~~~~ll~~l~~~l~---~~--~~~~~vr~~a~~~l~~  200 (462)
T 1ibr_B          130 IPQLVANVTNPN--STEHMKESTLEAIGYICQDIDPE--QLQDKSNEILTAIIQGMR---KE--EPSNNVKLAATNALLN  200 (462)
T ss_dssp             HHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHSCGG--GTGGGHHHHHHHHHHHHS---TT--CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCC--CCHHHHHHHHHHHHHHHHhCCch--hhHhHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHH
Confidence            445555554420  05567778999999999864211  1111  135666666664   21  1146788999999874


Q ss_pred             hCCCChhhHh-hcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchh-hHHHHHHHHhcCCCChHH
Q 046820          142 LFPLEGEALT-HLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENE-GAIEALFKLIEEPISPTA  219 (350)
Q Consensus       142 ~Ls~~~e~k~-~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~-g~i~~LV~lL~~~~~~~a  219 (350)
                      .+..-+++-. .....-.++.+...+.+.+.+.|..++.+|..+..... +.....+   . ++++.++..+++. ++..
T Consensus       201 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~~~---~~~l~~~~~~~~~~~-~~~v  275 (462)
T 1ibr_B          201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY-QYMETYM---GPALFAITIEAMKSD-IDEV  275 (462)
T ss_dssp             HTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGCTTTT---TTTHHHHHHHHHHCS-SHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHcCC-chHH
Confidence            3433221110 00001135556666666789999999999999975431 1122223   4 7778777777765 5556


Q ss_pred             HHHHHHHHHHhhhhH-------------------------------------------------------HHHHHHHHHH
Q 046820          220 TKAALVVIYHTIASS-------------------------------------------------------ASALSVLDGI  244 (350)
Q Consensus       220 ~k~Al~aL~~L~~~~-------------------------------------------------------e~aL~vL~~L  244 (350)
                      ...|+..+..++...                                                       ..|..+|..|
T Consensus       276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l  355 (462)
T 1ibr_B          276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL  355 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence            667777666665321                                                       1222222222


Q ss_pred             hCCHhhHHHhhcCCCChHHHHH----HHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCch
Q 046820          245 CSTDCGRENANDKPLTMPVVVK----KILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAE  320 (350)
Q Consensus       245 ~~~~eGr~ai~~~~~~v~~lv~----~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~  320 (350)
                      +..-        ....++.++.    .+...+...++.|+.+|..++.....   ...... -..+++.|+..++. ..+
T Consensus       356 ~~~~--------~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~---~~~~~~-l~~~~~~l~~~l~d-~~~  422 (462)
T 1ibr_B          356 ATCC--------EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP---SQLKPL-VIQAMPTLIELMKD-PSV  422 (462)
T ss_dssp             HHHT--------TTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT---TTTCTT-TTTHHHHHHHGGGC-SCH
T ss_pred             HHhc--------cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH---HHHHHH-HHHHHHHHHHHhcC-CCH
Confidence            2211        0122333333    33334567889999999999874321   111111 14567777766664 468


Q ss_pred             HHHHHHHHHHHHHHhcc
Q 046820          321 RTKEKASEVLKLMNLHR  337 (350)
Q Consensus       321 ~ak~kA~~LLk~l~~~~  337 (350)
                      +.|..|...|..+....
T Consensus       423 ~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          423 VVRDTAAWTVGRICELL  439 (462)
T ss_dssp             HHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999998887743

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=96.13  E-value=0.35  Score=47.68  Aligned_cols=106  Identities=12%  Similarity=0.105  Sum_probs=62.9

Q ss_pred             hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820           63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL  142 (350)
Q Consensus        63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~  142 (350)
                      .+..++..+.+    ++...+..|++.|..++..-...+.   ...++|.|...+    +    .+.+++..+...|. .
T Consensus        11 ~i~~l~~~l~s----~~~~~R~~A~~~l~~i~~~~~~~~~---~~~l~~~L~~~~----d----~~~~vr~~~~~~L~-~   74 (588)
T 1b3u_A           11 PIAVLIDELRN----EDVQLRLNSIKKLSTIALALGVERT---RSELLPFLTDTI----Y----DEDEVLLALAEQLG-T   74 (588)
T ss_dssp             HHHHHHHHTTC----SCHHHHHHHHHTHHHHHHHSCHHHH---HHTHHHHHHHTC----C----CCHHHHHHHHHHHT-T
T ss_pred             cHHHHHHHhhc----ccHHHHHHHHHhHHHHHHHhCHHHH---HHHHHHHHHHhc----C----CcHHHHHHHHHHHH-H
Confidence            36677777776    4667778899888887754221110   012345544322    1    23567777777776 3


Q ss_pred             CC--CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Q 046820          143 FP--LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSD  188 (350)
Q Consensus       143 Ls--~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~  188 (350)
                      +.  ++..  .  .....++.|..++...+...|..|+..|..+....
T Consensus        75 ~~~~~~~~--~--~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~  118 (588)
T 1b3u_A           75 FTTLVGGP--E--YVHCLLPPLESLATVEETVVRDKAVESLRAISHEH  118 (588)
T ss_dssp             CSGGGTSG--G--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHhccCcH--H--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHC
Confidence            32  1110  0  01235666666666778888999998888887543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=95.99  E-value=0.72  Score=45.32  Aligned_cols=210  Identities=12%  Similarity=0.067  Sum_probs=117.3

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhHhhcccCC
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEALTHLGSAS  157 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k~~i~~~~  157 (350)
                      +...+..|...|..++...+.+  .+ ..-++|.+..+..   ++    +...++.|..+|..... .++..+     ..
T Consensus       100 ~~~vR~~a~~~L~~l~~~~~~~--~~-~~~l~~~l~~l~~---~~----~~~~R~~a~~~l~~~~~~~~~~~~-----~~  164 (588)
T 1b3u_A          100 ETVVRDKAVESLRAISHEHSPS--DL-EAHFVPLVKRLAG---GD----WFTSRTSACGLFSVCYPRVSSAVK-----AE  164 (588)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCHH--HH-HHTHHHHHHHHHT---CS----SHHHHHHHGGGHHHHTTTSCHHHH-----HH
T ss_pred             hHHHHHHHHHHHHHHHHHCCHH--HH-HHHHHHHHHHHhc---CC----CcHHHHHHHHHHHHHHHhcCHHHH-----HH
Confidence            4455666777777777654331  11 1123444444442   11    34456666655552122 122211     23


Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820          158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA  237 (350)
Q Consensus       158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a  237 (350)
                      .++.+..++...+.+.|..|+..|..+.....  . . ..  .+.+++.|..++.++ ++.-.+.|+.+|..++...   
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~--~-~-~~--~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~---  234 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE--L-D-NV--KSEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLL---  234 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC--H-H-HH--HHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHS---
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--H-H-hH--HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhC---
Confidence            46666777777788888888888888875432  1 1 11  256778888888765 4445555566655554210   


Q ss_pred             HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhc
Q 046820          238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVG  317 (350)
Q Consensus       238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~  317 (350)
                              . ++   .+  ....+|.+.+.+...+...+..|+.+|..++...++       +......++.++.+++ +
T Consensus       235 --------~-~~---~~--~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~~l~-d  292 (588)
T 1b3u_A          235 --------P-QE---DL--EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-------EITKTDLVPAFQNLMK-D  292 (588)
T ss_dssp             --------C-HH---HH--HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-------HHHHHTHHHHHHHHHT-C
T ss_pred             --------C-HH---HH--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-------ccchhHHHHHHHHHhC-C
Confidence                    0 11   11  112356666666556677788898888888875321       1123345666666665 4


Q ss_pred             CchHHHHHHHHHHHHHHh
Q 046820          318 CAERTKEKASEVLKLMNL  335 (350)
Q Consensus       318 ~t~~ak~kA~~LLk~l~~  335 (350)
                      ..+..|+.|..-|..+..
T Consensus       293 ~~~~vr~~a~~~l~~~~~  310 (588)
T 1b3u_A          293 CEAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             SSHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHH
Confidence            467788887776666554

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=95.73  E-value=0.039  Score=56.15  Aligned_cols=217  Identities=14%  Similarity=0.142  Sum_probs=126.8

Q ss_pred             chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820           62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL  141 (350)
Q Consensus        62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~  141 (350)
                      .++.++-+.|.+    ++...+.+++.+|-.+---+..     . ..+.+.++.++.   ++    +.....-+.-.+. 
T Consensus        13 ~e~~~i~~~L~~----~~~~~k~~~~~kli~~~~~G~d-----~-~~~~~~vi~l~~---s~----~~~~Krl~yl~l~-   74 (591)
T 2vgl_B           13 GEIFELKAELNN----EKKEKRKEAVKKVIAAMTVGKD-----V-SSLFPDVVNCMQ---TD----NLELKKLVYLYLM-   74 (591)
T ss_dssp             SHHHHHHHHTTS----SCHHHHHHHHHHHHHHHHTTCC-----C-GGGHHHHHHTTS---SS----CHHHHHHHHHHHH-
T ss_pred             ChHHHHHHHHcC----CCHHHHHHHHHHHHHHHHCCCC-----h-HHHHHHHHHHhC---CC----CHHHHHHHHHHHH-
Confidence            456666666665    3567788888888765433321     1 134556666654   22    2343333322222 


Q ss_pred             hCC-CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHH
Q 046820          142 LFP-LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTAT  220 (350)
Q Consensus       142 ~Ls-~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~  220 (350)
                      ++. .+.|.. .    -.++.+.+-|.+.++..|..|...|.++..    ++    +  .+.+++.+.+++.++ ++.-.
T Consensus        75 ~~~~~~~e~~-~----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~----~~----~--~~~l~~~l~~~L~d~-~~~VR  138 (591)
T 2vgl_B           75 NYAKSQPDMA-I----MAVNSFVKDCEDPNPLIRALAVRTMGCIRV----DK----I--TEYLCEPLRKCLKDE-DPYVR  138 (591)
T ss_dssp             HHHHHSHHHH-H----TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS----GG----G--HHHHHHHHHHHSSCS-CHHHH
T ss_pred             HHcccCchHH-H----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh----HH----H--HHHHHHHHHHHcCCC-ChHHH
Confidence            221 111211 1    246677777888889999888766665531    12    2  156778899999876 78888


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHH
Q 046820          221 KAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVE  300 (350)
Q Consensus       221 k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~  300 (350)
                      +.|..+|++++..+             ++   .+ .+++.++.+.+.+...++....+|+.+|..+|...+..    ...
T Consensus       139 k~A~~al~~i~~~~-------------p~---~~-~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~----~~~  197 (591)
T 2vgl_B          139 KTAAVCVAKLHDIN-------------AQ---MV-EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS----NLL  197 (591)
T ss_dssp             HHHHHHHHHHHHSS-------------CC---CH-HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC----CSC
T ss_pred             HHHHHHHHHHHhhC-------------hh---hc-ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc----cch
Confidence            88888888886421             11   11 12234567777665566788999999999999875420    000


Q ss_pred             HHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhcc
Q 046820          301 ALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHR  337 (350)
Q Consensus       301 ~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~  337 (350)
                      .+..+.+.+|+..+. ++++-.+-+   +|+++..+.
T Consensus       198 ~l~~~~~~~Ll~~l~-~~~~~~q~~---il~~l~~l~  230 (591)
T 2vgl_B          198 DLNPQNINKLLTALN-ECTEWGQIF---ILDCLSNYN  230 (591)
T ss_dssp             CCHHHHHHHHHHHHH-HCCHHHHHH---HHHHHHTSC
T ss_pred             hccHHHHHHHHHcCC-CCCchHHHH---HHHHHHHhC
Confidence            012344666666554 456666665   666666544

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=95.58  E-value=0.37  Score=52.91  Aligned_cols=248  Identities=8%  Similarity=0.008  Sum_probs=148.9

Q ss_pred             cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820           61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI  140 (350)
Q Consensus        61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~  140 (350)
                      +.++..++.++.++    |...+..|...|....+.+...-.--....+++.|+..|.   +.    +..++..|+.+|.
T Consensus         5 ~~~l~~lL~~l~s~----d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~----~~~vR~~A~~~L~   73 (1230)
T 1u6g_C            5 SYHISNLLEKMTSS----DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DK----NGEVQNLAVKCLG   73 (1230)
T ss_dssp             CHHHHHHHHHTTCS----SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CS----SHHHHHHHHHHHH
T ss_pred             HhHHHHHHHhcCCC----CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc---CC----CHHHHHHHHHHHH
Confidence            45677788887764    5677888989988776543110000011245667777664   22    4778888888776


Q ss_pred             hhCC-CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchh-----HHhhhhchhhHHHHHHHHhcCC
Q 046820          141 LLFP-LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQR-----KVNVLSENEGAIEALFKLIEEP  214 (350)
Q Consensus       141 ~~Ls-~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~-----~~~~Ig~~~g~i~~LV~lL~~~  214 (350)
                      .+.. ++++..     ...++.+...|.+.+...|..|+..|..++.... +.     .....  .+.+++.|++.+.+.
T Consensus        74 ~l~~~~~~~~~-----~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~-~~~~~~~~~~~~--~~~llp~L~~~l~~~  145 (1230)
T 1u6g_C           74 PLVSKVKEYQV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELP-PASSGSALAANV--CKKITGRLTSAIAKQ  145 (1230)
T ss_dssp             HHHTTSCHHHH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------CCTHHHH--HHHHHHHHHHHHSCC
T ss_pred             HHHHhCCHHHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC-CcccccchHHHH--HHHHHHHHHHHHcCC
Confidence            2222 232221     1246677777777777889989998888875432 11     01111  368999999999854


Q ss_pred             CChHHHHHHHHHHHHhhhh---------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHH
Q 046820          215 ISPTATKAALVVIYHTIAS---------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKK  267 (350)
Q Consensus       215 ~~~~a~k~Al~aL~~L~~~---------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~  267 (350)
                      .++.....|+.+|..++..                           .+.|+.+|..++.....  .+  -...++.++..
T Consensus       146 ~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~--~~~~l~~l~~~  221 (1230)
T 1u6g_C          146 EDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IV--FVDLIEHLLSE  221 (1230)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HH--HHHHHHHHHHH
Confidence            4677888899999988731                           14677777777764321  12  12357778877


Q ss_pred             HhccC-hhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhcc
Q 046820          268 ILRVS-ELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHR  337 (350)
Q Consensus       268 l~~~S-~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~  337 (350)
                      +.... ...+..|+.+|..++...+.    .... .-...++.++..++. ..+..|+.|.+.+..+....
T Consensus       222 L~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~-~l~~l~~~ll~~l~d-~~~~vR~~a~~~l~~l~~~~  286 (1230)
T 1u6g_C          222 LSKNDSMSTTRTYIQCIAAISRQAGH----RIGE-YLEKIIPLVVKFCNV-DDDELREYCIQAFESFVRRC  286 (1230)
T ss_dssp             HHHTCSSCSCTTHHHHHHHHHHHSSG----GGTT-SCTTHHHHHHHHHSS-CCTTTHHHHHHHHHHHHHCT
T ss_pred             hccCCchhHHHHHHHHHHHHHHHhHH----HHHH-HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHC
Confidence            76543 23445567777777764431    0000 013456666666653 35677888777777666543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=95.42  E-value=1.8  Score=40.90  Aligned_cols=159  Identities=7%  Similarity=0.016  Sum_probs=93.7

Q ss_pred             CCcHHHHHHHHccC--CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCC-ChHHHHHHHHHHHHhhh
Q 046820          156 ASSMGCMIWFLNSG--DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPI-SPTATKAALVVIYHTIA  232 (350)
Q Consensus       156 ~~~l~~Lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~-~~~a~k~Al~aL~~L~~  232 (350)
                      ++.++.|+..+.++  +...|..|+.+|..+..... +......  .+.+++.|+..+.+.. ++.-...|+.++.++..
T Consensus       127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~  203 (462)
T 1ibr_B          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (462)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-GGGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC-chhhHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            45789999999998  89999999999999985321 1111111  2578899999998763 56666778888877643


Q ss_pred             hHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHH
Q 046820          233 SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLV  312 (350)
Q Consensus       233 ~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~  312 (350)
                      .-+..      + . ......     ..++.+.+.+....+..+..++.+|..++...+.    .....+...+++.++.
T Consensus       204 ~~~~~------~-~-~~~~~~-----~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~----~~~~~~~~~l~~~~~~  266 (462)
T 1ibr_B          204 FTKAN------F-D-KESERH-----FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ----YMETYMGPALFAITIE  266 (462)
T ss_dssp             TTHHH------H-T-SHHHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG----GCTTTTTTTHHHHHHH
T ss_pred             HHHHh------h-h-hhHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            21100      0 0 000000     0134444333334556678888888888765432    1111111144554444


Q ss_pred             HHHhcCchHHHHHHHHHHHHHHh
Q 046820          313 LLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       313 llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      .++ +-.+..+..|-+.+..+..
T Consensus       267 ~~~-~~~~~v~~~a~~~l~~~~~  288 (462)
T 1ibr_B          267 AMK-SDIDEVALQGIEFWSNVCD  288 (462)
T ss_dssp             HHH-CSSHHHHHHHHHHHHHHHH
T ss_pred             HHc-CCchHHHHHHHHHHHHHHH
Confidence            444 3367788888777766654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=95.31  E-value=2.8  Score=43.26  Aligned_cols=229  Identities=10%  Similarity=-0.043  Sum_probs=130.8

Q ss_pred             cchHHHHHHHh-HhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHH
Q 046820           61 SVEVLEINSKI-KTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTL  139 (350)
Q Consensus        61 ~~~v~~lv~~l-~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L  139 (350)
                      +.++..++..+ .+    .|.+.+.+|-..|..+.+.+        ..|+.+.|+.++..  ++   .+..++.-|.-.|
T Consensus         3 ~~~l~~~L~~~~~s----~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~l~~il~~--~~---~~~~vR~~A~~~l   65 (861)
T 2bpt_A            3 TAEFAQLLENSILS----PDQNIRLTSETQLKKLSNDN--------FLQFAGLSSQVLID--EN---TKLEGRILAALTL   65 (861)
T ss_dssp             HHHHHHHHHHHHHC----SSHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTC--TT---SCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccC----cCHHHHHHHHHHHHHHHhhC--------HHHHHHHHHHHHhC--CC---CChHHHHHHHHHH
Confidence            34556666665 54    35677888998998876542        24678888888852  11   1355666665555


Q ss_pred             HhhCC------------------CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchh
Q 046820          140 ILLFP------------------LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENE  201 (350)
Q Consensus       140 ~~~Ls------------------~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~  201 (350)
                      - ++-                  ++++.|.     ..-+.++..|.+.+...|..++.+|-.++..    ++..  +.-+
T Consensus        66 k-~~i~~~w~~~~~~~~~~~~~~l~~~~~~-----~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~----~~p~--~~w~  133 (861)
T 2bpt_A           66 K-NELVSKDSVKTQQFAQRWITQVSPEAKN-----QIKTNALTALVSIEPRIANAAAQLIAAIADI----ELPH--GAWP  133 (861)
T ss_dssp             H-TTTCCSSHHHHHHHHHHHHHHSCHHHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----HGGG--TCCH
T ss_pred             H-hhccCcChHHHHHHHHhHhhhCCHHHHH-----HHHHHHHHHHCCCchHHHHHHHHHHHHHHHh----hCcc--cccH
Confidence            5 441                  2222222     2345777888888888899999999888743    1111  1237


Q ss_pred             hHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcC-CCChHHHHHHHhcc--ChhHHHH
Q 046820          202 GAIEALFKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDK-PLTMPVVVKKILRV--SELATEL  278 (350)
Q Consensus       202 g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~-~~~v~~lv~~l~~~--S~~~~E~  278 (350)
                      ++++.|++.+.++.++..+..|+.+|..++..-.            ++-+ .+..+ ...++.++..+...  ++..+..
T Consensus       134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~------------~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~  200 (861)
T 2bpt_A          134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESAD------------PQSQ-ALVSSSNNILIAIVQGAQSTETSKAVRLA  200 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS------------TTSS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC------------hhhh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence            8999999999875456666667777766653100            0000 00000 11234444444443  5667788


Q ss_pred             HHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          279 SVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       279 Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      |+.+|..+..+..+   ...........++.|...++.+ .+..|+.|.+.|..+-.
T Consensus       201 al~~l~~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~  253 (861)
T 2bpt_A          201 ALNALADSLIFIKN---NMEREGERNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMS  253 (861)
T ss_dssp             HHHHHHHHGGGCHH---HHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HccChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            88888887654321   0100111122444444444433 57788887777765554

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.35  Score=43.64  Aligned_cols=192  Identities=8%  Similarity=0.076  Sum_probs=120.0

Q ss_pred             HHHHhHhhhccCChhHHHHHHHHHHH-HHhcCccccchh---hc-cCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820           67 INSKIKTACETQDQVGCKDLVAKIKE-WAKESESNKSCI---VD-NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL  141 (350)
Q Consensus        67 lv~~l~~~~~~~~~~~~~~Al~~L~~-Lak~s~~nR~~i---~~-aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~  141 (350)
                      +-..+.+    .+-.++.+|+.+|.. +...++   +.+   .+ ..++..|...+.   .   +.+..+++.|+.+|. 
T Consensus        21 f~~~l~s----~~w~eRk~al~~L~~~~~~~~~---~i~~~~~~~~~~~~~L~~~l~---~---D~n~~v~~~A~~al~-   86 (249)
T 2qk1_A           21 FQERITS----SKWKDRVEALEEFWDSVLSQTK---KLKSTSQNYSNLLGIYGHIIQ---K---DANIQAVALAAQSVE-   86 (249)
T ss_dssp             HHHHHTC----SSHHHHHHHHHHHHHHTGGGCC---CBCCTTCCCHHHHHHHHHHHH---H---CSCHHHHHHHHHHHH-
T ss_pred             HHHHhhc----CCHHHHHHHHHHHHHHHHhcCC---ccccCcccHHHHHHHHHHHhc---c---CCCHHHHHHHHHHHH-
Confidence            3444544    356889999999999 875432   222   11 134556666662   1   235667788888887 


Q ss_pred             hCCCChhhH-hhcc-c--CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCCh
Q 046820          142 LFPLEGEAL-THLG-S--ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISP  217 (350)
Q Consensus       142 ~Ls~~~e~k-~~i~-~--~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~  217 (350)
                      .|+  ...+ ..+. .  ...++.++..++......+..|..+|..+....+  ..... +....+++.|+..|+++ ++
T Consensus        87 ~la--~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~--~~~~~-~~l~~ll~~l~~~l~~k-~~  160 (249)
T 2qk1_A           87 LIC--DKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD--PLASS-GRNEDMLKDILEHMKHK-TP  160 (249)
T ss_dssp             HHH--HHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC--TTCTT-CTTHHHHHHHHHHTTCS-SH
T ss_pred             HHH--HhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc--ccccC-CcHHHHHHHHHHHHcCC-Ch
Confidence            343  1111 1221 1  2367888888888788888888888888875321  11111 11257899999999877 67


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhc--CCCChHHHHHHHhccChhHHHHHHHHHHHHccccc
Q 046820          218 TATKAALVVIYHTIASSASALSVLDGICSTDCGRENAND--KPLTMPVVVKKILRVSELATELSVSILWKLCMNEK  291 (350)
Q Consensus       218 ~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~--~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~  291 (350)
                      +.+..++.+|..++...             ...-..+..  ....+|.+.+.|....+..++.|..+|..+|+.-|
T Consensus       161 ~vk~~al~~l~~~~~~~-------------~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG  223 (249)
T 2qk1_A          161 QIRMECTQLFNASMKEE-------------KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG  223 (249)
T ss_dssp             HHHHHHHHHHHHHHHHC-------------CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHc-------------CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            77777777776665311             000011211  24668888888877788899999999999998654

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=95.02  E-value=0.53  Score=44.79  Aligned_cols=136  Identities=13%  Similarity=0.117  Sum_probs=95.5

Q ss_pred             chHHHHHHHhHhhhccCChhHHHHHHHHHHH-HHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820           62 VEVLEINSKIKTACETQDQVGCKDLVAKIKE-WAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI  140 (350)
Q Consensus        62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~-Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~  140 (350)
                      .++..++.+|.++    +..++..++..|+. +.++.+.-..+|...| +..|+.+..   .+    +...+.-+|++|.
T Consensus       118 ~ra~~iiekL~~~----~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~G-L~~Li~vi~---~~----~gN~q~Y~L~AL~  185 (339)
T 3dad_A          118 VRVNAILEKLYSS----SGPELRRSLFSLKQIFQEDKDLVPEFVHSEG-LSCLIRVGA---AA----DHNYQSYILRALG  185 (339)
T ss_dssp             HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTH-HHHHHHHHT---TS----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC----CcHHHHHHHHHHHHHhhcchHHHHHHHHhcc-HHHHHHHHH---hc----ChHHHHHHHHHHH
Confidence            5788899999863    46788999999998 6666666666666555 899999886   22    3557888999998


Q ss_pred             hhCCCChhhH-hhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhch-------h--hHHHHHHHH
Q 046820          141 LLFPLEGEAL-THLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSEN-------E--GAIEALFKL  210 (350)
Q Consensus       141 ~~Ls~~~e~k-~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~-------~--g~i~~LV~l  210 (350)
                      .++. ....- .++..+.+|..|+.++.+.....-..|..+|+.+....+  .+...+-..       .  --+..||.+
T Consensus       186 ~LM~-~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se--~~~~lv~~av~~v~~~~~~~p~~~Lv~~  262 (339)
T 3dad_A          186 QLML-FVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE--NNAPLFIRAVNSVASTTGAPPWANLVSI  262 (339)
T ss_dssp             HHTT-SHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHCCCTTHHHHHH
T ss_pred             HHHh-ccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc--ccchHHHHHHHHhhhccCCCcHHHHHHH
Confidence            5444 43343 344567899999999997777777789999999975532  233232110       0  126689999


Q ss_pred             hc
Q 046820          211 IE  212 (350)
Q Consensus       211 L~  212 (350)
                      |.
T Consensus       263 L~  264 (339)
T 3dad_A          263 LE  264 (339)
T ss_dssp             HT
T ss_pred             Hh
Confidence            97

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=94.70  E-value=0.7  Score=40.72  Aligned_cols=131  Identities=15%  Similarity=0.182  Sum_probs=83.1

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhc--cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccC
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVD--NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSA  156 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~--aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~  156 (350)
                      +...+..|+..|..+++.-..   .+..  .-++|.|+..+.   +.    +..+++.|..+|...+.... .      .
T Consensus        70 ~~~V~~~a~~~l~~la~~l~~---~~~~~~~~ilp~ll~~l~---d~----~~~vr~~a~~aL~~~~~~~~-~------~  132 (242)
T 2qk2_A           70 NVVLVAMAGKCLALLAKGLAK---RFSNYASACVPSLLEKFK---EK----KPNVVTALREAIDAIYASTS-L------E  132 (242)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHHGGG---CC----CHHHHHHHHHHHHHHHTTSC-H------H
T ss_pred             CHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHc---CC----CHHHHHHHHHHHHHHHHcCC-H------H
Confidence            455566788888888854211   1111  124555555553   32    46678888777773222110 0      2


Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchh--HHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 046820          157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQR--KVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTI  231 (350)
Q Consensus       157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~--~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~  231 (350)
                      ..++.+...|++.++..|..++..|-.+..... +.  ....+   +.+++.|+.++.|. ++...+.|..+|..++
T Consensus       133 ~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~-~~~~~~~~l---~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~  204 (242)
T 2qk2_A          133 AQQESIVESLSNKNPSVKSETALFIARALTRTQ-PTALNKKLL---KLLTTSLVKTLNEP-DPTVRDSSAEALGTLI  204 (242)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC-GGGCCHHHH---HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC-CCCccHHHH---HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Confidence            367888888998899999999999999654321 11  12223   67999999999876 5666777777777665

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=94.61  E-value=0.1  Score=41.87  Aligned_cols=88  Identities=18%  Similarity=0.100  Sum_probs=65.4

Q ss_pred             chHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Q 046820          109 AVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSD  188 (350)
Q Consensus       109 ai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~  188 (350)
                      .++.|+.+|.   +.    +..++..|+.+|. .+.          ...+++.|+..|+..+...|..|+..|-.+.   
T Consensus        43 ~~~~L~~~L~---d~----~~~vR~~A~~aL~-~~~----------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---  101 (131)
T 1te4_A           43 AFEPLLESLS---NE----DWRIRGAAAWIIG-NFQ----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG---  101 (131)
T ss_dssp             THHHHHHGGG---CS----CHHHHHHHHHHHG-GGC----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHc---CC----CHHHHHHHHHHHH-hcC----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence            4688888885   32    4778999988887 343          2346899999999889999999998887653   


Q ss_pred             CchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 046820          189 SDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYH  229 (350)
Q Consensus       189 ~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~  229 (350)
                                . +++++.|+.+++++ ++.....|..+|.+
T Consensus       102 ----------~-~~a~~~L~~~l~d~-~~~vr~~A~~aL~~  130 (131)
T 1te4_A          102 ----------G-ERVRAAMEKLAETG-TGFARKVAVNYLET  130 (131)
T ss_dssp             ----------S-HHHHHHHHHHTTSC-CTHHHHHHHHHGGG
T ss_pred             ----------c-HHHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                      2 56788999999865 55666666666543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=94.55  E-value=1.1  Score=39.53  Aligned_cols=162  Identities=12%  Similarity=0.070  Sum_probs=105.5

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhc-CCCChHHHHHHHHHHHHhhhh------
Q 046820          161 CMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIE-EPISPTATKAALVVIYHTIAS------  233 (350)
Q Consensus       161 ~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~-~~~~~~a~k~Al~aL~~L~~~------  233 (350)
                      .+...+.+.++..|..|+..|..+....+  ...  -+....+++.|..++. +. +......|+.+|..|+..      
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~--~~~--~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~   93 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHP--KLE--NGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFS   93 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCS--SBC--CCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCC--CCC--CCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHH
Confidence            36667788899999999999999975421  111  1233578889999995 65 778889999999988732      


Q ss_pred             ---------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcccccc
Q 046820          234 ---------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKR  292 (350)
Q Consensus       234 ---------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~  292 (350)
                                           .+.+..+|..++.+. +-.      ..++.+...+...++..++.++..|..+....++
T Consensus        94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-SLE------AQQESIVESLSNKNPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-CHH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-CHH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence                                 135666666665532 111      1245555555556788999999999995443211


Q ss_pred             chHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccC
Q 046820          293 EEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRD  338 (350)
Q Consensus       293 ~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~  338 (350)
                      .  .....-+ ...++.|+..+. +..+..|..|.+.|-.+.....
T Consensus       167 ~--~~~~~~l-~~l~p~l~~~l~-D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          167 T--ALNKKLL-KLLTTSLVKTLN-EPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             G--GCCHHHH-HHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHC
T ss_pred             C--CccHHHH-HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHcC
Confidence            1  0001111 135666666665 5578999999999888776543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=94.53  E-value=2.9  Score=42.51  Aligned_cols=133  Identities=13%  Similarity=0.151  Sum_probs=82.2

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCc
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASS  158 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~  158 (350)
                      ++-.+...++-|+.++..++...     ..+.+.|..++....... ..+..+.-+++.++. .+..+++.+.     .+
T Consensus       247 ~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~-~~~~aV~~ea~~~i~-~l~~~~~l~~-----~a  314 (618)
T 1w63_A          247 DPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSK-NVGNAILYETVLTIM-DIKSESGLRV-----LA  314 (618)
T ss_dssp             CHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSS-THHHHHHHHHHHHHH-HSCCCHHHHH-----HH
T ss_pred             CChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhcccccc-chHHHHHHHHHHHHH-hcCCCHHHHH-----HH
Confidence            55667778888888876654321     134566666664210000 113456667777777 4543322211     35


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 046820          159 MGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIA  232 (350)
Q Consensus       159 l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~  232 (350)
                      ++.|..+|.+.+.+.|.-|...|..+...     ....+   ......++..+.++ +..-++.|+.+|+.++.
T Consensus       315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~-----~p~~~---~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~  379 (618)
T 1w63_A          315 INILGRFLLNNDKNIRYVALTSLLKTVQT-----DHNAV---QRHRSTIVDCLKDL-DVSIKRRAMELSFALVN  379 (618)
T ss_dssp             HHHHHHHHTCSSTTTHHHHHHHHHHHHHH-----HHHHH---GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHHhh-----CHHHH---HHHHHHHHHHccCC-ChhHHHHHHHHHHHHcc
Confidence            77888888888888888888888888743     22223   34566777777765 56777888888888864

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=94.41  E-value=2  Score=43.82  Aligned_cols=155  Identities=11%  Similarity=0.089  Sum_probs=89.0

Q ss_pred             HHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCC
Q 046820           67 INSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLE  146 (350)
Q Consensus        67 lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~  146 (350)
                      .+..+.....+.++..+.-|++.|..+...      -+.+ .++|.+..+|.   +.    ++.++..|+.++..+...+
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~------~~~~-~l~~~l~~~L~---~~----~~~VRk~A~~al~~l~~~~  173 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSS------EMCR-DLAGEVEKLLK---TS----NSYLRKKAALCAVHVIRKV  173 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH------HHHH-HHHHHHHHHHH---SC----CHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH------HHHH-HHHHHHHHHHc---CC----CHHHHHHHHHHHHHHHHHC
Confidence            334444333334556666677777766521      1222 35677777775   22    4778888888887322222


Q ss_pred             hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcC-------------
Q 046820          147 GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEE-------------  213 (350)
Q Consensus       147 ~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~-------------  213 (350)
                      .+.   +  .+.++.+..+|...++..+.+|+.+|..+...+  ++....+   ..+++.|+++|.+             
T Consensus       174 p~~---v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~--~~~~~~~---~~~v~~l~~~L~~~~~~~~~~~~~~~  243 (618)
T 1w63_A          174 PEL---M--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS--PDMLAHF---RKLVPQLVRILKNLIMSGYSPEHDVS  243 (618)
T ss_dssp             GGG---G--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH--HHHHHHH---HTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred             hHH---H--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC--hHHHHHH---HHHHHHHHHHHHHHHcCCCCcccccc
Confidence            221   1  146677777787778999999999999998542  2222222   3566777776653             


Q ss_pred             -CCChHHHHHHHHHHHHhhhh----HHHHHHHHHHHh
Q 046820          214 -PISPTATKAALVVIYHTIAS----SASALSVLDGIC  245 (350)
Q Consensus       214 -~~~~~a~k~Al~aL~~L~~~----~e~aL~vL~~L~  245 (350)
                       -.++-..-..+.+|..++..    .+..+.+|..+.
T Consensus       244 ~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~  280 (618)
T 1w63_A          244 GISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVA  280 (618)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence             12454555566666666542    223444555553

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=94.24  E-value=1.5  Score=41.68  Aligned_cols=156  Identities=12%  Similarity=0.145  Sum_probs=108.0

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHH-HhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHH
Q 046820          158 SMGCMIWFLNSGDLSRRRNAVLLLTE-LVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSAS  236 (350)
Q Consensus       158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~-Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~  236 (350)
                      ....++.-|.+++.+.+..+..-|.. ++.+.+  ...+-| + .+.+..|++++.++ +..-              --.
T Consensus       119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~--Fa~EFI-~-~~GL~~Li~vi~~~-~gN~--------------q~Y  179 (339)
T 3dad_A          119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKD--LVPEFV-H-SEGLSCLIRVGAAA-DHNY--------------QSY  179 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTT--HHHHHH-H-TTHHHHHHHHHTTS-CHHH--------------HHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchH--HHHHHH-H-hccHHHHHHHHHhc-ChHH--------------HHH
Confidence            56778888888888888888888887 443332  445556 4 46689999999765 3211              137


Q ss_pred             HHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHh-----hc--hHHH
Q 046820          237 ALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQ-----VG--AFQK  309 (350)
Q Consensus       237 aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~-----~G--~v~~  309 (350)
                      +|.+|..|..+..|-..+..|+..|.-++..+-......-.-|.++|..+|.++.+ +-..+..++.     .|  -++.
T Consensus       180 ~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~  258 (339)
T 3dad_A          180 ILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWAN  258 (339)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHH
T ss_pred             HHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHH
Confidence            88899999999999999988877777777766644456678899999999998742 1223333332     12  3778


Q ss_pred             HHHHHHh--cCchHHHHHHHHHHHHH
Q 046820          310 LLVLLQV--GCAERTKEKASEVLKLM  333 (350)
Q Consensus       310 LL~llq~--~~t~~ak~kA~~LLk~l  333 (350)
                      |+.+|+.  ++....+-+|..|+.-+
T Consensus       259 Lv~~L~~~~~~D~elq~~amtLIN~l  284 (339)
T 3dad_A          259 LVSILEEKNGADPELLVYTVTLINKT  284 (339)
T ss_dssp             HHHHHTTTTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            8888872  33567788887777544

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=94.20  E-value=0.0063  Score=56.15  Aligned_cols=24  Identities=17%  Similarity=0.153  Sum_probs=21.9

Q ss_pred             cccccccCCccc-CCCCCCcccCCccc
Q 046820           25 GASLIEKDPVTT-TPRNGITYDRVNIL   50 (350)
Q Consensus        25 ~~~eiM~DPVtl-~~~TG~TYDR~sIe   50 (350)
                      ..+++|+|||+. .  .||||+|++|+
T Consensus       186 Icl~~f~DPVts~~--CGHsFcR~cI~  210 (267)
T 3htk_C          186 ITCKPYEAPLISRK--CNHVFDRDGIQ  210 (267)
T ss_dssp             TTSSBCSSEEEESS--SCCEEEHHHHH
T ss_pred             CccCcccCCeeeCC--CCCcccHHHHH
Confidence            478999999985 8  89999999999

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.18  E-value=4.9  Score=43.54  Aligned_cols=225  Identities=12%  Similarity=0.120  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHhcCccccchhhcc---CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhHhhcccCCcH
Q 046820           84 KDLVAKIKEWAKESESNKSCIVDN---AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEALTHLGSASSM  159 (350)
Q Consensus        84 ~~Al~~L~~Lak~s~~nR~~i~~a---Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k~~i~~~~~l  159 (350)
                      ..|+..+..+++........  +.   +.+|.++..+   ++    ....+++.|-+++..+.. ++.+..     ...+
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~--e~~~~~~~~~~~~~~---~d----k~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~  135 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSV--EPYIVQLVPAICTNA---GN----KDKEIQSVASETLISIVNAVNPVAI-----KALL  135 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTT--HHHHHTTHHHHHHHT---TC----SSHHHHHHHHHHHHHHHHHSCGGGH-----HHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCc--ccchHHHHHHHHHHh---cC----CchHHHHHHHHHHHHHHHhCCHHHH-----HHHH
Confidence            56777777777554321111  21   2233333333   22    235566555444432111 233322     2368


Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhc-hhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh--H-
Q 046820          160 GCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSE-NEGAIEALFKLIEEPISPTATKAALVVIYHTIAS--S-  234 (350)
Q Consensus       160 ~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~-~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~--~-  234 (350)
                      +.|+..|.++ .+++|..|..+|..|+...     ...++. -+++||.+-...-|- .+.-++.|..++..+|..  | 
T Consensus       136 ~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~  209 (986)
T 2iw3_A          136 PHLTNAIVETNKWQEKIAILAAFSAMVDAA-----KDQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNK  209 (986)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCT
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHHHh-----HHHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCc
Confidence            8999999876 7999999999999998542     233432 367777777777654 567788888888888752  1 


Q ss_pred             ----------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhc----cChhHHHHHHHHHHHHccccccch
Q 046820          235 ----------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKKILR----VSELATELSVSILWKLCMNEKREE  294 (350)
Q Consensus       235 ----------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~----~S~~~~E~Av~iL~~Lc~~~~~~~  294 (350)
                                      +..=..+..|+.+- -.+++  ++-.++.+|-+|.|    .+...+-.++-|.-|||+.-.+  
T Consensus       210 d~~~~~~~~~~~~~~p~~~~~~~~~l~~~t-fv~~v--~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~--  284 (986)
T 2iw3_A          210 DIERFIPSLIQCIADPTEVPETVHLLGATT-FVAEV--TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED--  284 (986)
T ss_dssp             TTGGGHHHHHHHHHCTTHHHHHHHHHTTCC-CCSCC--CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC--
T ss_pred             chhhhHHHHHHHhcChhhhHHHHHHhhcCe-eEeee--cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC--
Confidence                            12222333333320 00000  22223344444443    3566678999999999998642  


Q ss_pred             HHHHHHHHhhchHHHHHHHHH----hcCchHHHHHHHHHHHHHHhccC
Q 046820          295 KTAFVEALQVGAFQKLLVLLQ----VGCAERTKEKASEVLKLMNLHRD  338 (350)
Q Consensus       295 ~~~~~~~~~~G~v~~LL~llq----~~~t~~ak~kA~~LLk~l~~~~~  338 (350)
                      +.....     .+++|+=-++    .-.-|.+|+.|..-++.|.+.-.
T Consensus       285 ~~~~~~-----f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~  327 (986)
T 2iw3_A          285 PQVIAP-----FLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN  327 (986)
T ss_dssp             HHHHHH-----HHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhh-----hhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence            322222     2444444443    23358999999999999988644

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=94.15  E-value=3.6  Score=42.52  Aligned_cols=235  Identities=10%  Similarity=0.015  Sum_probs=130.5

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhc--cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhh-Hhhccc
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVD--NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEA-LTHLGS  155 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~--aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~-k~~i~~  155 (350)
                      ++..+..++..|..+++....  ..+..  ..+++.+...+.   ++  +.+..++..|+.+|...+..-..+ ......
T Consensus       143 ~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~---~~--~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  215 (876)
T 1qgr_A          143 TEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMR---KE--EPSNNVKLAATNALLNSLEFTKANFDKESER  215 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHS---TT--CSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhc---CC--CCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            556677899899888876321  11221  134555555553   21  113567888888887322211111 000000


Q ss_pred             CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH-
Q 046820          156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS-  234 (350)
Q Consensus       156 ~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~-  234 (350)
                      ...++.+...+...+.+.|..|...|..+..... ......+ . ..+++.++..+.+. ++.....|+..+..++... 
T Consensus       216 ~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~-~-~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~  291 (876)
T 1qgr_A          216 HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY-QYMETYM-G-PALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEM  291 (876)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG-GGCHHHH-T-TTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH-HHHHHHH-H-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHH
Confidence            1246666777777788999999999999875431 1222223 1 26777777777654 4555566666665554320 


Q ss_pred             ------------------------------------------------------HHHHHHHHHHhCCHhhHHHhhcCCCC
Q 046820          235 ------------------------------------------------------ASALSVLDGICSTDCGRENANDKPLT  260 (350)
Q Consensus       235 ------------------------------------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~  260 (350)
                                                                            ..|..+|..|+..- |       ...
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~-~-------~~~  363 (876)
T 1qgr_A          292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-E-------DDI  363 (876)
T ss_dssp             HHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH-G-------GGG
T ss_pred             hHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC-c-------Hhh
Confidence                                                                  12222333332211 1       112


Q ss_pred             hHHHHHH----HhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820          261 MPVVVKK----ILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH  336 (350)
Q Consensus       261 v~~lv~~----l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~  336 (350)
                      ++.++..    +...+...++.|+.+|..++...+.   ..... .-..+++.|+..++ +..+..|..|...|..+...
T Consensus       364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~-~~~~~l~~l~~~l~-d~~~~vr~~a~~~l~~~~~~  438 (876)
T 1qgr_A          364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP---SQLKP-LVIQAMPTLIELMK-DPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH---HHHHH-HHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH---HHHHH-HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHh
Confidence            3444333    3344567889999999888875431   12222 22346777777776 44688999998888877764


Q ss_pred             c
Q 046820          337 R  337 (350)
Q Consensus       337 ~  337 (350)
                      .
T Consensus       439 ~  439 (876)
T 1qgr_A          439 L  439 (876)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=93.82  E-value=2  Score=39.14  Aligned_cols=147  Identities=17%  Similarity=0.186  Sum_probs=101.6

Q ss_pred             CChhHHHHHHHHHHHHHhcCcc-ccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH---hhCCCChhhHhhc
Q 046820           78 QDQVGCKDLVAKIKEWAKESES-NKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI---LLFPLEGEALTHL  153 (350)
Q Consensus        78 ~~~~~~~~Al~~L~~Lak~s~~-nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~---~~Ls~~~e~k~~i  153 (350)
                      .|...+..++..|..+-|+-+. -|..+.+. ..|.++.++.   +.    +..+.-.|+.+|-   .+.+++++.-.. 
T Consensus        45 kD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk---~~----dEkval~A~r~L~~LLe~vpL~~~~y~K-  115 (265)
T 3b2a_A           45 DDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALS---QE----NEKVTIKALRALGYLVKDVPMGSKTFLK-  115 (265)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCC---ST----THHHHHHHHHHHHHHHTTCCBCHHHHHH-
T ss_pred             cchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHh---cc----chhHHHHHHHHHHHHHcCCCCCHHHHHH-
Confidence            4667777888888888887322 22233333 4788888775   22    3555555555554   344555543332 


Q ss_pred             ccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 046820          154 GSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS  233 (350)
Q Consensus       154 ~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~  233 (350)
                          .++.+..++++++.--+++|+-.|..|.-..          -.++++.-|..++. +.+++.+-+|+.+|.+++..
T Consensus       116 ----l~~aL~dlik~~~~il~~eaae~Lgklkv~~----------~~~~V~~~l~sLl~-Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          116 ----AAKTLVSLLESPDDMMRIETIDVLSKLQPLE----------DSKLVRTYINELVV-SPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             ----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC----------CCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHGGG
T ss_pred             ----HHHHHHHHhcCCCchHHHHHHHHhCcCCccc----------chHHHHHHHHHHHh-CCChhHHHHHHHHHHHhhcc
Confidence                4678888889999888999999999883221          13677788888884 44888888999999999752


Q ss_pred             -------------------------HHHHHHHHHHHhCCH
Q 046820          234 -------------------------SASALSVLDGICSTD  248 (350)
Q Consensus       234 -------------------------~e~aL~vL~~L~~~~  248 (350)
                                               .|.||.+|+.+.+.+
T Consensus       181 S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          181 SADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             CSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence                                     169999999999975

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=93.31  E-value=7.6  Score=39.96  Aligned_cols=243  Identities=9%  Similarity=0.021  Sum_probs=128.6

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhc--cCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHh-hccc
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVD--NAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALT-HLGS  155 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~--aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~-~i~~  155 (350)
                      ++..+..++.-+..++++-...-+.+..  ..+++.+...+.   +.  +.+..++..|+.+|...+..-+++-. -...
T Consensus       148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~---~~--~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~  222 (861)
T 2bpt_A          148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQ---ST--ETSKAVRLAALNALADSLIFIKNNMEREGER  222 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHS---TT--CCCHHHHHHHHHHHHHHGGGCHHHHTSHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhc---CC--CCCHHHHHHHHHHHHHHHHHHHHHccChhHH
Confidence            5667778888888888764322111111  123444444443   21  11467888899888743322221100 0001


Q ss_pred             CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchh-hHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH
Q 046820          156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENE-GAIEALFKLIEEPISPTATKAALVVIYHTIASS  234 (350)
Q Consensus       156 ~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~-g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~  234 (350)
                      ...++.+...+.+.+.+.|..|+..|..+..... ......+   . .+++.+...+.+. ++.....|+..+..++...
T Consensus       223 ~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l---~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~  297 (861)
T 2bpt_A          223 NYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY-TFMKPYM---EQALYALTIATMKSP-NDKVASMTVEFWSTICEEE  297 (861)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG-GGCHHHH---HHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHH
Confidence            1256677777777899999999999999874321 1111122   2 5666666777654 5667777777777765421


Q ss_pred             -------------------------HHHHHH-HHHHhCCH--------hhHH----Hh---hc--CCCChHHHHHHHh--
Q 046820          235 -------------------------ASALSV-LDGICSTD--------CGRE----NA---ND--KPLTMPVVVKKIL--  269 (350)
Q Consensus       235 -------------------------e~aL~v-L~~L~~~~--------eGr~----ai---~~--~~~~v~~lv~~l~--  269 (350)
                                               +..+.. +..|....        .-|.    .+   ..  ....++.++..+.  
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~  377 (861)
T 2bpt_A          298 IDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQN  377 (861)
T ss_dssp             HHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred             HhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHH
Confidence                                     011111 11222110        0010    00   00  1123455544443  


Q ss_pred             --ccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820          270 --RVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH  336 (350)
Q Consensus       270 --~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~  336 (350)
                        ..+...++.|+.+|..++....   .......+ ..+++.|+..+. +..+..|..|...|..+...
T Consensus       378 l~~~~~~~r~~a~~~l~~i~~~~~---~~~~~~~l-~~il~~l~~~l~-d~~~~vr~~a~~~l~~l~~~  441 (861)
T 2bpt_A          378 ITADNWRNREAAVMAFGSIMDGPD---KVQRTYYV-HQALPSILNLMN-DQSLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             TTCSSHHHHHHHHHHHHHTSSSSC---HHHHHHHH-HHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCChhHHHHHHHHHHHHHcCCC---HHHHHHHH-HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHH
Confidence              3345778999999999986542   11222222 235666665554 34678888887766655543

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=93.23  E-value=0.16  Score=40.74  Aligned_cols=86  Identities=20%  Similarity=0.190  Sum_probs=58.2

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820          158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA  237 (350)
Q Consensus       158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a  237 (350)
                      .++.|+..|++.+...|..|+.+|-.+.             . +++++.|+.+|+++ ++.-...|..+|.++.      
T Consensus        43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~-------------~-~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~------  101 (131)
T 1te4_A           43 AFEPLLESLSNEDWRIRGAAAWIIGNFQ-------------D-ERAVEPLIKLLEDD-SGFVRSGAARSLEQIG------  101 (131)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGC-------------S-HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcC-------------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC------
Confidence            4799999999889999999888776542             2 46789999999876 5555555555555442      


Q ss_pred             HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHH
Q 046820          238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSIL  283 (350)
Q Consensus       238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL  283 (350)
                                         +..+++.|++.+...++..+..|+..|
T Consensus       102 -------------------~~~a~~~L~~~l~d~~~~vr~~A~~aL  128 (131)
T 1te4_A          102 -------------------GERVRAAMEKLAETGTGFARKVAVNYL  128 (131)
T ss_dssp             -------------------SHHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             -------------------cHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence                               122356666666544555566666655

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=92.45  E-value=0.014  Score=43.08  Aligned_cols=24  Identities=38%  Similarity=0.522  Sum_probs=22.0

Q ss_pred             cccccccCCcccCCCCCCcccCCccc
Q 046820           25 GASLIEKDPVTTTPRNGITYDRVNIL   50 (350)
Q Consensus        25 ~~~eiM~DPVtl~~~TG~TYDR~sIe   50 (350)
                      --+++|+|||++.  .|+||.|..|+
T Consensus        13 IC~~~~~~Pv~~~--CgH~fc~~Ci~   36 (78)
T 1t1h_A           13 ISLELMKDPVIVS--TGQTYERSSIQ   36 (78)
T ss_dssp             TTSCCCSSEEEET--TTEEEEHHHHH
T ss_pred             CccccccCCEEcC--CCCeecHHHHH
Confidence            4578999999999  99999999997

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=92.08  E-value=2.3  Score=38.72  Aligned_cols=166  Identities=14%  Similarity=0.083  Sum_probs=101.8

Q ss_pred             CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh--
Q 046820          156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS--  233 (350)
Q Consensus       156 ~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~--  233 (350)
                      .+.+..|..+|...+...|.+|..+|+++-...+ ...+..+  ....++.+++++++. +.+-.-.|+++|--|...  
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~-~~l~~~~--~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vp  107 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRAD-SDLRMMV--LERHLDVFINALSQE-NEKVTIKALRALGYLVKDVP  107 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC-HHHHHHH--HHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-ccccHHH--HHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCC
Confidence            4478888899988899999999999999986543 1233222  478999999999877 556666777777777432  


Q ss_pred             --H---HHHHHHHHHHhCCH---------hhHHHhhcCCCChHHHHHHHhc--c--ChhHHHHHHHHHHHHccccccchH
Q 046820          234 --S---ASALSVLDGICSTD---------CGRENANDKPLTMPVVVKKILR--V--SELATELSVSILWKLCMNEKREEK  295 (350)
Q Consensus       234 --~---e~aL~vL~~L~~~~---------eGr~ai~~~~~~v~~lv~~l~~--~--S~~~~E~Av~iL~~Lc~~~~~~~~  295 (350)
                        .   .+...+|-.+-...         |+-..+ .-..-++-++..+++  .  ..+.|..|...|.++..++++  .
T Consensus       108 L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D--~  184 (265)
T 3b2a_A          108 MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD--S  184 (265)
T ss_dssp             BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS--C
T ss_pred             CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC--H
Confidence              1   23333443333321         111111 111223444444332  3  457899999999999998864  1


Q ss_pred             HHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820          296 TAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN  334 (350)
Q Consensus       296 ~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~  334 (350)
                      +..     ..+|.-+=.+|++. .+..+++|-..|..+-
T Consensus       185 ~i~-----~~I~~eI~elL~~e-D~~l~e~aLd~Le~il  217 (265)
T 3b2a_A          185 GHL-----TLILDEIPSLLQND-NEFIVELALDVLEKAL  217 (265)
T ss_dssp             CCG-----GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHT
T ss_pred             HHH-----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence            121     22333344556666 6777888766655443

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=90.16  E-value=18  Score=36.84  Aligned_cols=223  Identities=14%  Similarity=0.136  Sum_probs=113.9

Q ss_pred             CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCC
Q 046820           78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSAS  157 (350)
Q Consensus        78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~  157 (350)
                      .+++.+.-++..|..++..++. ...+.  ...+.++..|. + ++    +..+...++.+|+. +. +++|-..     
T Consensus       341 ~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~-~-d~----d~~Ir~~aL~lL~~-l~-~~~Nv~~-----  404 (621)
T 2vgl_A          341 RETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALK-T-ER----DVSVRQRAVDLLYA-MC-DRSNAQQ-----  404 (621)
T ss_dssp             SCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHT-T-CC----CHHHHHHHHHHHHH-HC-CHHHHHH-----
T ss_pred             CCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhc-c-CC----CHhHHHHHHHHHHH-Hc-ChhhHHH-----
Confidence            3556666666666666654421 11221  23455555553 1 22    46788889999983 43 3444332     


Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh----
Q 046820          158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS----  233 (350)
Q Consensus       158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~----  233 (350)
                      .+.-|...+...+.+-|..++..+..++..     +.   ....-++..|+++++...+ ....+....+.++...    
T Consensus       405 Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k-----~~---~~~~~~v~~Ll~ll~~~~~-~v~~ev~~~l~~ii~~~~~~  475 (621)
T 2vgl_A          405 IVAEMLSYLETADYSIREEIVLKVAILAEK-----YA---VDYTWYVDTILNLIRIAGD-YVSEEVWYRVIQIVINRDDV  475 (621)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-----HC---SSTHHHHHHHHHHHHHHGG-GSCSHHHHHHHHHHGGGCSC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-----cC---CcHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHhCChhH
Confidence            355666777777888888888888887631     10   0123455555555553211 1222333333333221    


Q ss_pred             HHHHHHHH-HHHhCCHhhHHHhh---------------cCCCC-----hHHHHHHHhccChhHHHHHHHHHHHHcccccc
Q 046820          234 SASALSVL-DGICSTDCGRENAN---------------DKPLT-----MPVVVKKILRVSELATELSVSILWKLCMNEKR  292 (350)
Q Consensus       234 ~e~aL~vL-~~L~~~~eGr~ai~---------------~~~~~-----v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~  292 (350)
                      .+.++..| +.|-. ++.++.+.               ..++.     +..+.+.+...++..+..++.++..++...++
T Consensus       476 ~~~~~~~l~~~l~~-~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~  554 (621)
T 2vgl_A          476 QGYAAKTVFEALQA-PACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE  554 (621)
T ss_dssp             HHHHHHHHHHHHTS-SSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHcC-ccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH
Confidence            11121111 11111 12222221               11221     12233333345677788888888888765431


Q ss_pred             chHHHHHHHHhhchHHHHHHHHHh--cCchHHHHHHHHHHHHHHhc
Q 046820          293 EEKTAFVEALQVGAFQKLLVLLQV--GCAERTKEKASEVLKLMNLH  336 (350)
Q Consensus       293 ~~~~~~~~~~~~G~v~~LL~llq~--~~t~~ak~kA~~LLk~l~~~  336 (350)
                          ..      ..+..++.....  +-.+..|++|.+.+++|+..
T Consensus       555 ----~~------~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~  590 (621)
T 2vgl_A          555 ----VK------ATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVA  590 (621)
T ss_dssp             ----GH------HHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred             ----HH------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence                11      113333333333  44679999999999999853

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=89.53  E-value=5.8  Score=35.41  Aligned_cols=139  Identities=9%  Similarity=0.129  Sum_probs=79.1

Q ss_pred             ChhHHHHHHHHHHHHHhcCc--ccc-chhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhHhhcc
Q 046820           79 DQVGCKDLVAKIKEWAKESE--SNK-SCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEALTHLG  154 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~--~nR-~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k~~i~  154 (350)
                      +...+..|+..|..+++.-.  .-. .+..  -++|.++..+.   +.    ...+++.+..+|..++. +++.. .. .
T Consensus        74 n~~v~~~A~~al~~la~~l~~~~f~~~y~~--~llp~ll~~l~---dk----k~~V~~aa~~al~~i~~~~~~~~-~~-~  142 (249)
T 2qk1_A           74 NIQAVALAAQSVELICDKLKTPGFSKDYVS--LVFTPLLDRTK---EK----KPSVIEAIRKALLTICKYYDPLA-SS-G  142 (249)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--HHHHHHHHGGG---CC----CHHHHHHHHHHHHHHHHHSCTTC-TT-C
T ss_pred             CHHHHHHHHHHHHHHHHhcccccccHHHHH--HHHHHHHHHHc---CC----CHHHHHHHHHHHHHHHHHccccc-cC-C
Confidence            33445667777777774321  100 1111  13555555553   22    35566665555542111 21100 00 0


Q ss_pred             -cCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhh-hch-hhHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 046820          155 -SASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVL-SEN-EGAIEALFKLIEEPISPTATKAALVVIYHTI  231 (350)
Q Consensus       155 -~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~I-g~~-~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~  231 (350)
                       =...++.|...|++.++..|+.++..|..+.....  .....+ ... +.++|.|.+++.+. ++..+..|..+|-.++
T Consensus       143 ~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~--~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          143 RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK--DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILI  219 (249)
T ss_dssp             TTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC--SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence             11468888999999999999999999999974421  100111 123 68999999999876 5666666666666665

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=86.20  E-value=15  Score=33.65  Aligned_cols=145  Identities=12%  Similarity=0.098  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccCCcHHH
Q 046820           83 CKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSASSMGC  161 (350)
Q Consensus        83 ~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~~~l~~  161 (350)
                      .+.|+.=+.-+|. +++.|..+.++.+.-.|-.+|.-.+...  ....++-.++.++..++..+| |.-.-+.+.+.++.
T Consensus        73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r--~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl  149 (268)
T 2fv2_A           73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTR--PFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL  149 (268)
T ss_dssp             HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSH--HHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCC--cchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence            3567877777886 5788999999998888889986211110  112334446655554333344 44444457789999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhh-------HHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 046820          162 MIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEG-------AIEALFKLIEEPISPTATKAALVVIYHTIAS  233 (350)
Q Consensus       162 Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g-------~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~  233 (350)
                      ..+.++.|+.-+|.-|+.++..+..++.  .. .-+....+       ++..+|.-+.+..+++..|..+++-..|+.+
T Consensus       150 CLrime~GselSKtvAtfIlqKIL~dd~--GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          150 CLRIMESGSELSKTVATFILQKILLDDT--GL-AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHSHH--HH-HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHhccch--hH-HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999986531  22 22222233       3333333333455888888777777777643

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=86.03  E-value=26  Score=35.95  Aligned_cols=159  Identities=8%  Similarity=0.030  Sum_probs=93.9

Q ss_pred             CCcHHHHHHHHccC--CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCC-ChHHHHHHHHHHHHhhh
Q 046820          156 ASSMGCMIWFLNSG--DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPI-SPTATKAALVVIYHTIA  232 (350)
Q Consensus       156 ~~~l~~Lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~-~~~a~k~Al~aL~~L~~  232 (350)
                      +..++.++..+.++  +...|..|..+|..+..... ++....  ..+.+++.|+..+.++. +......|+.+|.+++.
T Consensus       127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~--~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~  203 (876)
T 1qgr_A          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (876)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-HHHHGG--GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-HhhHHh--HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            45789999999988  89999999999999975321 121111  13678888999998763 55666777888877754


Q ss_pred             hHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHH
Q 046820          233 SSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLV  312 (350)
Q Consensus       233 ~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~  312 (350)
                      .-...      +.. ..-+.      ..++.+...+....+..++.|..+|..++...+.    .....+....++.++.
T Consensus       204 ~~~~~------~~~-~~~~~------~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~l~~~~~~  266 (876)
T 1qgr_A          204 FTKAN------FDK-ESERH------FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ----YMETYMGPALFAITIE  266 (876)
T ss_dssp             GCHHH------HTS-HHHHH------HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG----GCHHHHTTTHHHHHHH
T ss_pred             HHHHH------HHh-HHHHH------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHH
Confidence            21100      000 00000      1234444433334456677888888888775432    2222223345665554


Q ss_pred             HHHhcCchHHHHHHHHHHHHHHh
Q 046820          313 LLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       313 llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      .++ +..+..+..|-+.+..+.+
T Consensus       267 ~~~-~~~~~v~~~al~~l~~l~~  288 (876)
T 1qgr_A          267 AMK-SDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HHT-CSSHHHHHHHHHHHHHHHH
T ss_pred             Hhc-CCchHHHHHHHHHHHHHHH
Confidence            443 3356777777777766654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=85.74  E-value=7.6  Score=42.38  Aligned_cols=180  Identities=11%  Similarity=0.008  Sum_probs=102.5

Q ss_pred             chHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820          128 NVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEAL  207 (350)
Q Consensus       128 ~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L  207 (350)
                      +..++..|..-|...+.-+.-.-.--.....++.++..|.+.+.+.|..|+..|..+.....  .  ..   .+.+++.|
T Consensus        19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~--~--~~---~~~i~~~L   91 (1230)
T 1u6g_C           19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK--E--YQ---VETIVDTL   91 (1230)
T ss_dssp             SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC--H--HH---HHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC--H--HH---HHHHHHHH
Confidence            36677777666653332110000000012357778888888899999999999999986432  2  12   25678888


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhh-----HHHhhcCCCChHHHHHHHhc-cChhHHHHHHH
Q 046820          208 FKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCG-----RENANDKPLTMPVVVKKILR-VSELATELSVS  281 (350)
Q Consensus       208 V~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eG-----r~ai~~~~~~v~~lv~~l~~-~S~~~~E~Av~  281 (350)
                      +..+.++ ++.....|..+|-.++..           .. ++.     ....  .+..+|.+.+.+.. .+...++.|+.
T Consensus        92 l~~l~d~-~~~vR~~a~~~L~~i~~~-----------l~-~~~~~~~~~~~~--~~~llp~L~~~l~~~~~~~~~~~al~  156 (1230)
T 1u6g_C           92 CTNMLSD-KEQLRDISSIGLKTVIGE-----------LP-PASSGSALAANV--CKKITGRLTSAIAKQEDVSVQLEALD  156 (1230)
T ss_dssp             HHHTTCS-SSHHHHHHHHHHHHHHHH-----------CC------CCTHHHH--HHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred             HHHhcCC-cHHHHHHHHHHHHHHHHh-----------CC-CcccccchHHHH--HHHHHHHHHHHHcCCCchHHHHHHHH
Confidence            8888776 334455555555554321           00 000     0001  22346888887763 56788999999


Q ss_pred             HHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          282 ILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       282 iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      +|..+|...+..-....     ...++.|+..++. ..+..|++|...|..+-.
T Consensus       157 ~l~~~~~~~~~~l~~~~-----~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~  204 (1230)
T 1u6g_C          157 IMADMLSRQGGLLVNFH-----PSILTCLLPQLTS-PRLAVRKRTIIALGHLVM  204 (1230)
T ss_dssp             HHHHHHHHTCSSCTTTH-----HHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhHhHHHHHH-----HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHH
Confidence            99999975432100011     2234445544543 356777777766665554

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=85.48  E-value=25  Score=33.34  Aligned_cols=137  Identities=13%  Similarity=0.088  Sum_probs=88.2

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820          158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA  237 (350)
Q Consensus       158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a  237 (350)
                      +++.|.+=+.+.++-.|.+|.++|.++...    +.   +   +.+.+.+.+.|.+. +|--.|.|+.+.++|....   
T Consensus       105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~----~m---~---~~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~---  170 (355)
T 3tjz_B          105 VTSSLTKDMTGKEDSYRGPAVRALCQITDS----TM---L---QAIERYMKQAIVDK-VPSVSSSALVSSLHLLKCS---  170 (355)
T ss_dssp             GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT----TT---H---HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTC---
T ss_pred             HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH----HH---H---HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccC---
Confidence            678888889999999999999999999743    22   2   46677788888877 7788888888888886432   


Q ss_pred             HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhc
Q 046820          238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVG  317 (350)
Q Consensus       238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~  317 (350)
                                +|-..      ..+..+-+.+...++...-+|+++|..++..++    .         ++.+|+..+..+
T Consensus       171 ----------pe~v~------~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~----~---------a~~kLv~~l~~~  221 (355)
T 3tjz_B          171 ----------FDVVK------RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR----L---------AVSKMISKFTRH  221 (355)
T ss_dssp             ----------HHHHH------TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH----H---------HHHHHHHHHHSS
T ss_pred             ----------HHHHH------HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch----H---------HHHHHHHHHhcC
Confidence                      21111      234555554545566666799999999998642    1         344444444332


Q ss_pred             C--chHHHHHHHHHHHHHHhccCCC
Q 046820          318 C--AERTKEKASEVLKLMNLHRDRL  340 (350)
Q Consensus       318 ~--t~~ak~kA~~LLk~l~~~~~~~  340 (350)
                      +  ++-++-+   +||.+..+-+++
T Consensus       222 ~l~~~~~q~~---llr~l~~~~~~d  243 (355)
T 3tjz_B          222 GLKSPFAYCM---MIRVASRQLEDE  243 (355)
T ss_dssp             CCSCHHHHHH---HHHHHTCC----
T ss_pred             CCcChHHHHH---HHHHHHHhcccc
Confidence            2  3444444   677666655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.65
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.57
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.51
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.48
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.47
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.41
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	97.76
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	97.3
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	97.1
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	96.3
d1b3ua_	588	Constant regulatory domain of protein phosphatase	95.82
d1b3ua_	588	Constant regulatory domain of protein phosphatase	95.68
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.27
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	95.1
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	94.82
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	94.44
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	94.41
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	93.62
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	93.22
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	90.87
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	89.8
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	88.76
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	87.37
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	87.1
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	85.76
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	81.24
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	80.98
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	80.96
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	80.69

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.3e-15  Score=146.99  Aligned_cols=253  Identities=14%  Similarity=0.114  Sum_probs=191.8

Q ss_pred             hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820           63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL  142 (350)
Q Consensus        63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~  142 (350)
                      .|..|++-+.+    +|...+..|+..|..+++.+..++..+...|++|.|+.+|..  .+    +.++++.|+.+|. +
T Consensus        18 aip~L~~lL~~----~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~--~~----~~~~~~~a~~~L~-~   86 (529)
T d1jdha_          18 AIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TN----DVETARCTAGTLH-N   86 (529)
T ss_dssp             HHHHHHHHHTC----SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH--CC----CHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcC--CC----CHHHHHHHHHHHH-H
Confidence            36667777765    467888999999999997754444444555899999999972  22    4678999999998 7


Q ss_pred             CCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHH
Q 046820          143 FPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKA  222 (350)
Q Consensus       143 Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~  222 (350)
                      |+.+++++..+.+.|+++.|+.+|++++.+.+.+|+.+|.+|+.+.+  ..+..+.. .|+|+.|+++|+++ ++.....
T Consensus        87 l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~--~~~~~~~~-~g~i~~Lv~lL~~~-~~~~~~~  162 (529)
T d1jdha_          87 LSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE--GAKMAVRL-AGGLQKMVALLNKT-NVKFLAI  162 (529)
T ss_dssp             HTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT--THHHHHHH-HTHHHHHHHGGGCC-CHHHHHH
T ss_pred             HhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--hhhhHHHh-cCCchHHHHHHHcc-ChHHHHH
Confidence            88788888888888999999999999999999999999999987653  56666745 89999999999876 6788888


Q ss_pred             HHHHHHHhhhhH-----------------------------HHHHHHHHHHhCCHhhHHHhhcCCCC-------------
Q 046820          223 ALVVIYHTIASS-----------------------------ASALSVLDGICSTDCGRENANDKPLT-------------  260 (350)
Q Consensus       223 Al~aL~~L~~~~-----------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~-------------  260 (350)
                      +..+|.+++..+                             +.+..+|.+++.+++.+..+. +.++             
T Consensus       163 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~-~~g~~~~L~~ll~~~~~  241 (529)
T d1jdha_         163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPSQ  241 (529)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHH-HTTHHHHHHTTTTSSCH
T ss_pred             HHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhh-hhhhhhhHHHHhcccch
Confidence            999999986421                             356777777777766666554 3344             


Q ss_pred             --------------------------hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHH
Q 046820          261 --------------------------MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLL  314 (350)
Q Consensus       261 --------------------------v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~ll  314 (350)
                                                |+.+++.+...+...+++|+.+|+++|..+    ......+.+.|+++.|+..+
T Consensus       242 ~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~~i~~~~~i~~Li~~l  317 (529)
T d1jdha_         242 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTV  317 (529)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC----HHHHHHHHHTTHHHHHHHHH
T ss_pred             hhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccch----hHHHHHHHHhhhHHHHHHHH
Confidence                                      444444444445566788888888888754    34566677899999998887


Q ss_pred             Hhc-CchHHHHHHHHHHHHHHh
Q 046820          315 QVG-CAERTKEKASEVLKLMNL  335 (350)
Q Consensus       315 q~~-~t~~ak~kA~~LLk~l~~  335 (350)
                      ... ..+..++.|...|+.+..
T Consensus       318 ~~~~~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         318 LRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HhhhcchhHHHHHHHHhhcccc
Confidence            643 356778888888876653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=3e-14  Score=135.20  Aligned_cols=256  Identities=12%  Similarity=0.078  Sum_probs=200.3

Q ss_pred             cchHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccc-cchhhccCchHHHHHHHHhccccccccchHHHHHHHHHH
Q 046820           61 SVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESN-KSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTL  139 (350)
Q Consensus        61 ~~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~n-R~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L  139 (350)
                      ...|..+++.+.+    ++++.+..|+..|+++.+..... ...+.+.|++|.|+.+|.+  .+    +.+++.+|+.+|
T Consensus        12 ~~~i~~lv~~l~s----~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~--~~----~~~v~~~a~~~L   81 (434)
T d1q1sc_          12 NWSVEDIVKGINS----NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TD----CSPIQFESAWAL   81 (434)
T ss_dssp             SCCHHHHHHHHTS----SCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTC--GG----GHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHcc--CC----CHHHHHHHHHHH
Confidence            3468899998877    47899999999999887643322 3568889999999999962  22    367899999999


Q ss_pred             HhhCC-CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCC--
Q 046820          140 ILLFP-LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPIS--  216 (350)
Q Consensus       140 ~~~Ls-~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~--  216 (350)
                      . +++ .+++.+..+.+.|.++.++.+|.+++.+.+++|+.+|.+|+.+.  +.++..+.. .|+++.|+.++..+..  
T Consensus        82 ~-~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~--~~~~~~i~~-~~~~~~l~~~l~~~~~~~  157 (434)
T d1q1sc_          82 T-NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIK-HGAIDPLLALLAVPDLST  157 (434)
T ss_dssp             H-HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTCHHHHHHHTCSSCGGG
T ss_pred             H-HHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccc--hHHHHHHHH-hhhhhHHHHHHHhccccc
Confidence            8 775 44577778888999999999999999999999999999999764  467777745 7999999999986532  


Q ss_pred             --hHHHHHHHHHHHHhhhh----------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHH
Q 046820          217 --PTATKAALVVIYHTIAS----------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVK  266 (350)
Q Consensus       217 --~~a~k~Al~aL~~L~~~----------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~  266 (350)
                        ......+..++.+++..                            ...++.+|.+|+.....+..+....++++.+++
T Consensus       158 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~  237 (434)
T d1q1sc_         158 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK  237 (434)
T ss_dssp             SCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccc
Confidence              12334445555555421                            136888899998876556556568899999999


Q ss_pred             HHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          267 KILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       267 ~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      .+...+...++.|+.+|.+++..+    +.....+++.|+++.|..+++.. .+..|+.|...|..+..
T Consensus       238 ll~~~~~~~~~~al~~l~~l~~~~----~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~  301 (434)
T d1q1sc_         238 LLGATELPIVTPALRAIGNIVTGT----DEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA  301 (434)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTT
T ss_pred             ccccchhhhhhchhhhhhhHHhhh----hHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhcc
Confidence            988888899999999999999854    45777888999999988888755 67789998888887754

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4e-14  Score=131.81  Aligned_cols=251  Identities=14%  Similarity=0.118  Sum_probs=181.9

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      |..+|+-|.+    +|++.+..|++.|.+++.+++++|..|.+.|+||.|+.+|.   ++    +.++++.|+.+|. +|
T Consensus         4 ip~lv~~L~~----~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~---~~----~~~v~~~a~~aL~-~L   71 (457)
T d1xm9a1           4 IPKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR---SP----NQNVQQAAAGALR-NL   71 (457)
T ss_dssp             HHHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT---SS----CHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHhCC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHC---CC----CHHHHHHHHHHHH-HH
Confidence            5577888876    47889999999999999999999999999999999999996   22    4789999999999 78


Q ss_pred             CCC-hhhHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhh------------------------
Q 046820          144 PLE-GEALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVL------------------------  197 (350)
Q Consensus       144 s~~-~e~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~I------------------------  197 (350)
                      +.+ ++++..+.+.|+++.++.++.+. +.+.+..|+.+|.+|+.....  .....                        
T Consensus        72 ~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  149 (457)
T d1xm9a1          72 VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL--KEELIADALPVLADRVIIPFSGWCDGNSN  149 (457)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST--HHHHHHHHHHHHHHHTTHHHHTCC-----
T ss_pred             HcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh--HHHHHhcccHHHHHHHHhhhhhhhcchhh
Confidence            754 58888888899999999999764 889999999999999865321  10000                        


Q ss_pred             ------------------h-------------chhhHHHHHHHHhcCC-----CChHHHHHHHHHHHH------------
Q 046820          198 ------------------S-------------ENEGAIEALFKLIEEP-----ISPTATKAALVVIYH------------  229 (350)
Q Consensus       198 ------------------g-------------~~~g~i~~LV~lL~~~-----~~~~a~k~Al~aL~~------------  229 (350)
                                        .             ...|+++.|+.++++.     ............+.+            
T Consensus       150 ~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  229 (457)
T d1xm9a1         150 MSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTR  229 (457)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCH
T ss_pred             hhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence                              0             0134556666555420     000000000000000            


Q ss_pred             --------------------------------------------------------------------------------
Q 046820          230 --------------------------------------------------------------------------------  229 (350)
Q Consensus       230 --------------------------------------------------------------------------------  229 (350)
                                                                                                      
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~  309 (457)
T d1xm9a1         230 YRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQ  309 (457)
T ss_dssp             HHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -hhhh---------------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc----
Q 046820          230 -TIAS---------------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRV----  271 (350)
Q Consensus       230 -L~~~---------------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~----  271 (350)
                       ++..                                 .+.++.+|.+|+..++.+..+.  .++++.+++.+...    
T Consensus       310 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~--~~~i~~li~~L~~~~~~~  387 (457)
T d1xm9a1         310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG--NQVFPEVTRLLTSHTGNT  387 (457)
T ss_dssp             HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH--HHTHHHHHHTTTSCCSCS
T ss_pred             HHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHH--HhhHHHHHHHHhccccCc
Confidence             0000                                 0268888888888888888775  35788998887642    


Q ss_pred             --ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820          272 --SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN  334 (350)
Q Consensus       272 --S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~  334 (350)
                        ++...++|+.+|.+++..+.    ...+.+++.|+++.|+.++.+..++..++.|..+|..|.
T Consensus       388 ~~~~~v~~~a~~~L~~l~~~~~----~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~  448 (457)
T d1xm9a1         388 SNSEDILSSACYTVRNLMASQP----QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW  448 (457)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCT----HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred             CCcHHHHHHHHHHHHHHhcCCH----HHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence              23457889999999987543    466777799999999999887778899999998888773

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=2.3e-13  Score=132.83  Aligned_cols=252  Identities=12%  Similarity=0.125  Sum_probs=199.9

Q ss_pred             chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHh-cCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820           62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAK-ESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI  140 (350)
Q Consensus        62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak-~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~  140 (350)
                      ..+..++..+.+    +|.+.+..|+..++.+.. +....-..+.++|++|.|+.+|..  +.    +..++.+|+.+|.
T Consensus        76 ~~l~~~~~~~~s----~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~--~~----~~~iq~~a~~~L~  145 (503)
T d1wa5b_          76 QELPQMTQQLNS----DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE--NQ----PEMLQLEAAWALT  145 (503)
T ss_dssp             CCHHHHHHHHSC----SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST--TS----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcC--CC----CHHHHHHHHHHHH
Confidence            346667776654    467888999999998764 333344578889999999999962  22    3678899999998


Q ss_pred             hhCCCCh-hhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHH
Q 046820          141 LLFPLEG-EALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTA  219 (350)
Q Consensus       141 ~~Ls~~~-e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a  219 (350)
                       |++..+ +....+...|.++.++.+|.+++.+.+.+|+.+|.+|+...  +.++..+.. .|+++.|+.++.+. ++..
T Consensus       146 -ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~--~~~r~~l~~-~~~~~~L~~ll~~~-~~~~  220 (503)
T d1wa5b_         146 -NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS--TDYRDYVLQ-CNAMEPILGLFNSN-KPSL  220 (503)
T ss_dssp             -HHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTCHHHHHHGGGSC-CHHH
T ss_pred             -HHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhh--HHHHHHHHh-hcccccchhhcccC-CHHH
Confidence             776444 55666778899999999999999999999999999999764  478877745 89999999999876 5678


Q ss_pred             HHHHHHHHHHhhhhH----------------------------HHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhc
Q 046820          220 TKAALVVIYHTIASS----------------------------ASALSVLDGICST-DCGRENANDKPLTMPVVVKKILR  270 (350)
Q Consensus       220 ~k~Al~aL~~L~~~~----------------------------e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~  270 (350)
                      .+.+..+|.++|...                            ..++.+|..|+.. ++....+. +.++++.++..+..
T Consensus       221 ~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~  299 (503)
T d1wa5b_         221 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSH  299 (503)
T ss_dssp             HHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGC
T ss_pred             HHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhh-hhhhhhhhhhcccC
Confidence            899999999998531                            3677888888864 55556564 77899999999988


Q ss_pred             cChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820          271 VSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN  334 (350)
Q Consensus       271 ~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~  334 (350)
                      .++..+..|+.+|.+++...    +.....+...|+++.|..+++.. .+..++.|...|..+.
T Consensus       300 ~~~~v~~~al~~l~nl~~~~----~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~  358 (503)
T d1wa5b_         300 ESTLVQTPALRAVGNIVTGN----DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNIT  358 (503)
T ss_dssp             SCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHT
T ss_pred             CchhhhhhHHHHHHHHHHHH----HHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHh
Confidence            89999999999999999854    44666777999999988887755 6778888777776654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.4e-13  Score=135.04  Aligned_cols=252  Identities=13%  Similarity=0.096  Sum_probs=192.8

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +..+++-|++    +++..+..|+..|.+++.+++..|..+.+.|+||.|+.+|.   .+    +.++++.+..+|. ++
T Consensus       103 i~~Li~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~---~~----~~~~~~~a~~~L~-~l  170 (529)
T d1jdha_         103 IPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KT----NVKFLAITTDCLQ-IL  170 (529)
T ss_dssp             HHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG---CC----CHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHhCC----CCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHH---cc----ChHHHHHHHHHHH-HH
Confidence            4455555544    56788899999999999999999999999999999999996   22    3678899888888 67


Q ss_pred             CCC-hhhHhhcccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820          144 PLE-GEALTHLGSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK  221 (350)
Q Consensus       144 s~~-~e~k~~i~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k  221 (350)
                      +.. ++++..+...+.++.++.+|++. ....+..++.+|.+|+...   +++..+.. .|+++.|+.++.++ +++...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~---~~~~~~~~-~g~~~~L~~ll~~~-~~~~~~  245 (529)
T d1jdha_         171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVE-AGGMQALGLHLTDP-SQRLVQ  245 (529)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST---THHHHHHH-TTHHHHHHTTTTSS-CHHHHH
T ss_pred             hhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc---cccchhhh-hhhhhhHHHHhccc-chhhhh
Confidence            644 46667777889999999999876 5678899999999998653   67776756 79999999999876 677888


Q ss_pred             HHHHHHHHhhhh-------------------------HHHHHHHHHHHhCC-HhhHHHhhcCCCChHHHHHHHhcc--Ch
Q 046820          222 AALVVIYHTIAS-------------------------SASALSVLDGICST-DCGRENANDKPLTMPVVVKKILRV--SE  273 (350)
Q Consensus       222 ~Al~aL~~L~~~-------------------------~e~aL~vL~~L~~~-~eGr~ai~~~~~~v~~lv~~l~~~--S~  273 (350)
                      .++.+|.+++..                         .+.++.+|.+|+.. ++.+..+ .+.++++.++..+...  ++
T Consensus       246 ~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i-~~~~~i~~Li~~l~~~~~~~  324 (529)
T d1jdha_         246 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV-CQVGGIEALVRTVLRAGDRE  324 (529)
T ss_dssp             HHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH-HHTTHHHHHHHHHHHHTTCH
T ss_pred             hhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHH-HHhhhHHHHHHHHHhhhcch
Confidence            888888888532                         14788999999864 4445555 5789999999998764  35


Q ss_pred             hHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820          274 LATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN  334 (350)
Q Consensus       274 ~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~  334 (350)
                      ..++.|+.+|++++..... .+.........|+++.|+.++..+.....++.+..+|..+.
T Consensus       325 ~~~~~a~~aL~~l~~~~~~-~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~  384 (529)
T d1jdha_         325 DITEPAICALRHLTSRHQE-AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA  384 (529)
T ss_dssp             HHHHHHHHHHHHHTSSSTT-HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhhcccchhhc-chhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcc
Confidence            6789999999999976532 12333444488999998888765544445555556666554

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.8e-12  Score=126.48  Aligned_cols=252  Identities=15%  Similarity=0.097  Sum_probs=199.9

Q ss_pred             HHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC
Q 046820           65 LEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP  144 (350)
Q Consensus        65 ~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls  144 (350)
                      ..++.-+...   .+...+..|+..|..++..++.....+.+.|++|.|+.+|.+   +    +.++++.|+.+|. |++
T Consensus       122 ~~Lv~~l~~~---~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s---~----~~~i~~~a~~~L~-nia  190 (503)
T d1wa5b_         122 PRLVEFMREN---QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT---G----SVEVKEQAIWALG-NVA  190 (503)
T ss_dssp             HHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH---C----CHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHcCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcC---C----ChhHHHHHHHHHH-HHh
Confidence            3444444432   245677889999999999888888889999999999999972   2    3678999999999 776


Q ss_pred             CC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHH
Q 046820          145 LE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAA  223 (350)
Q Consensus       145 ~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~A  223 (350)
                      .+ ++.+..+.+.|.++.++.++.+...+.+.+++.+|.+|+....  ...... ...++++.|+.++.++ ++....++
T Consensus       191 ~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~--~~~~~~-~~~~~l~~l~~~l~~~-d~~~~~~~  266 (503)
T d1wa5b_         191 GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK--PQPDWS-VVSQALPTLAKLIYSM-DTETLVDA  266 (503)
T ss_dssp             TTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS--SCCCHH-HHGGGHHHHHHHTTCC-CHHHHHHH
T ss_pred             hhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCc--cchHHH-HHHHHHHHHHHHhccc-cHHHHHHH
Confidence            44 4788888889999999999999999999999999999986532  111111 2368999999999876 67888999


Q ss_pred             HHHHHHhhhhH----------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhH
Q 046820          224 LVVIYHTIASS----------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELA  275 (350)
Q Consensus       224 l~aL~~L~~~~----------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~  275 (350)
                      ..+|.+++...                            ..++.+|.+++...+.....+...++++.+..++...++.-
T Consensus       267 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i  346 (503)
T d1wa5b_         267 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI  346 (503)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred             HHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHH
Confidence            99999986421                            47899999999876555555557788999998877777788


Q ss_pred             HHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhc
Q 046820          276 TELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLH  336 (350)
Q Consensus       276 ~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~  336 (350)
                      ++.++.+|.+++..+    ......+.+.|+++.++..+..+ +...|+.|...|..+...
T Consensus       347 ~~~~~~~l~nl~~~~----~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~  402 (503)
T d1wa5b_         347 KKEACWTISNITAGN----TEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSG  402 (503)
T ss_dssp             HHHHHHHHHHHTTSC----HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcc----HHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhc
Confidence            899999999998854    34667777999999999998866 688999998888777653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=3.6e-12  Score=120.54  Aligned_cols=247  Identities=11%  Similarity=0.104  Sum_probs=186.2

Q ss_pred             CChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCCh-hhHhhcccC
Q 046820           78 QDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEG-EALTHLGSA  156 (350)
Q Consensus        78 ~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~-e~k~~i~~~  156 (350)
                      .+.+.+..|+..|.+++.+++..|..+.+.|+++.|+.++......  .........+...+. ++.... .........
T Consensus       111 ~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~  187 (434)
T d1q1sc_         111 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS--TLACGYLRNLTWTLS-NLCRNKNPAPPLDAVE  187 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGG--GSCHHHHHHHHHHHH-HHTCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccc--cchHHHHHHHHHHHH-HHhhcccccchhhhhh
Confidence            4667788899999999999999999999999999999999622111  112234455555565 454332 222222345


Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH--
Q 046820          157 SSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS--  234 (350)
Q Consensus       157 ~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~--  234 (350)
                      +.++.++.++.+++.+.+.+|+..|.+|+...  +.....+.. .|+++.|+.+++++ ++.....|+.+|.+++..+  
T Consensus       188 ~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~-~~~~~~Lv~ll~~~-~~~~~~~al~~l~~l~~~~~~  263 (434)
T d1q1sc_         188 QILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVVK-KGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDE  263 (434)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHHHHHHT-TTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHHHhccccchhhhHHhhhcccchhh--hhhHHHHhh-cccchhcccccccc-hhhhhhchhhhhhhHHhhhhH
Confidence            67899999999999999999999999998664  355555545 89999999999876 7788899999999996421  


Q ss_pred             --------------------------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820          235 --------------------------ASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCM  288 (350)
Q Consensus       235 --------------------------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~  288 (350)
                                                +.++.+|.+|+...+.........++++.++..+...+...++.|+.+|.+++.
T Consensus       264 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~  343 (434)
T d1q1sc_         264 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS  343 (434)
T ss_dssp             HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHh
Confidence                                      478899999987544444433467889999999988889999999999999988


Q ss_pred             ccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          289 NEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       289 ~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      .+.   .+....+.+.|+++.|+.+++.+ .+..+..+-..|..+-.
T Consensus       344 ~~~---~~~~~~l~~~~~i~~L~~ll~~~-d~~~~~~~l~~l~~ll~  386 (434)
T d1q1sc_         344 GGT---VEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQ  386 (434)
T ss_dssp             HSC---HHHHHHHHHTTCHHHHHHHTTSS-CHHHHHHHHHHHHHHHH
T ss_pred             cCC---HHHHHHHHHCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            653   45667788999999999998865 57777777666654433

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.9e-13  Score=120.54  Aligned_cols=193  Identities=8%  Similarity=0.050  Sum_probs=150.9

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHH-HHhccccccccchHHHHHHHHHHHhhCCC-ChhhHhhcccC
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAA-FESFSKTCLDENVSVLEEILSTLILLFPL-EGEALTHLGSA  156 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~l-L~~~~~~~~~~~~~~~e~Al~~L~~~Ls~-~~e~k~~i~~~  156 (350)
                      |.+.+..|+..|..|+. +..|++-+...|++++|+.. |.   ++    +.+++..|+.+|. +++- ++..+..+.+.
T Consensus        30 ~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~---s~----~~~vr~~A~~~L~-~l~~~~~~~~~~~~~~  100 (264)
T d1xqra1          30 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLE---AG----AAGLRWRAAQLIG-TCSQNVAAIQEQVLGL  100 (264)
T ss_dssp             HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTT---CS----SHHHHHHHHHHHH-HHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhC---CC----CHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence            45777889999999994 56788889999999999874 53   22    4789999999999 6764 44667778888


Q ss_pred             CcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHH
Q 046820          157 SSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSA  235 (350)
Q Consensus       157 ~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e  235 (350)
                      +.++.|+.+|.+. +.+.+.+|+.+|.+|+...  +..+..+.. .|+++.|+++++++ ++.....++.+|.+++.   
T Consensus       101 ~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~~~-~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~---  173 (264)
T d1xqra1         101 GALRKLLRLLDRDACDTVRVKALFAISCLVREQ--EAGLLQFLR-LDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLV---  173 (264)
T ss_dssp             THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH---
T ss_pred             CchHHHHHHhhcCCCHHHHHHHHHHHHHHhccc--hhhHHHHHH-hhhhhHHHHHHhcC-chHHHHHHHHHHHHHHh---
Confidence            9999999999765 7889999999999999765  366666645 79999999999876 55555555555555543   


Q ss_pred             HHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHH
Q 046820          236 SALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEAL  302 (350)
Q Consensus       236 ~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~  302 (350)
                                ..++.+..+. ..+++|.++..+...++..+++|+.+|++|+..++    ....++.
T Consensus       174 ----------~~~~~~~~~~-~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~----~~~~~~~  225 (264)
T d1xqra1         174 ----------GHPEHKGTLC-SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP----QGVRECR  225 (264)
T ss_dssp             ----------HCGGGHHHHH-HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH----HHHHHHH
T ss_pred             ----------ccHHHHHHHH-HhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCH----HHHHHHH
Confidence                      2355666664 67899999999988888999999999999998653    3555555

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.8e-12  Score=115.98  Aligned_cols=184  Identities=16%  Similarity=0.126  Sum_probs=144.2

Q ss_pred             hHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHH-HHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820          129 VSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIW-FLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEAL  207 (350)
Q Consensus       129 ~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~-~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L  207 (350)
                      .+.++.|+.+|. +|.-+.+++..+...|.++.++. +|.+++.+.|..|+.+|.+++...  +.++..+.. .|+++.|
T Consensus        31 ~~~~~~Al~~L~-~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~--~~~~~~~~~-~~~i~~L  106 (264)
T d1xqra1          31 QQEREGALELLA-DLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV--AAIQEQVLG-LGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHH-HHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHH-TTHHHHH
T ss_pred             HHHHHHHHHHHH-HHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHH-cCchHHH
Confidence            556788888888 56655577777777888998875 788889999999999999999764  466666645 7999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHc
Q 046820          208 FKLIEEPISPTATKAALVVIYHTIASSASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLC  287 (350)
Q Consensus       208 V~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc  287 (350)
                      +.++.+..++.....|+.+|.+++.             ..++++..+. ..++++.+++.+...++..+++|+.+|+++|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~-------------~~~~~~~~~~-~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~  172 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVR-------------EQEAGLLQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL  172 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHT-------------TCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhc-------------cchhhHHHHH-HhhhhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            9999765565554544444444432             2455666664 7889999999998889999999999999999


Q ss_pred             cccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          288 MNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       288 ~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      ..+.    .....+...|+++.|+.+|+++ .+..+++|...|..|..
T Consensus       173 ~~~~----~~~~~~~~~~~v~~L~~lL~~~-~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         173 VGHP----EHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HHCG----GGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHT
T ss_pred             hccH----HHHHHHHHhhhHHHHHHHHcCC-CHHHHHHHHHHHHHHHh
Confidence            8653    3666777999999999999865 67889998888877754

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.6e-11  Score=113.73  Aligned_cols=150  Identities=11%  Similarity=0.075  Sum_probs=125.4

Q ss_pred             CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCC-hhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhc
Q 046820          108 AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLE-GEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVS  186 (350)
Q Consensus       108 Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~-~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~  186 (350)
                      +.||.|+.+|.   ++    +++++..|..+|. ||..+ +++|..+.+.|+|+.|+.+|++++.+.|.+|+.+|.+|+.
T Consensus         2 ~~ip~lv~~L~---~~----~~~~~~~a~~~l~-~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~   73 (457)
T d1xm9a1           2 LTIPKAVQYLS---SQ----DEKYQAIGAYYIQ-HTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF   73 (457)
T ss_dssp             CCHHHHHHHHH---SS----CTHHHHHHHHHHH-HHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHhC---CC----CHHHHHHHHHHHH-HHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence            47999999997   23    4789999999999 88865 5889999999999999999999999999999999999996


Q ss_pred             CCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhH--------------------------------
Q 046820          187 SDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASS--------------------------------  234 (350)
Q Consensus       187 ~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~--------------------------------  234 (350)
                      ..  ++++..|.. .|+++.|+.++.+..++.....|..+|.+++...                                
T Consensus        74 ~~--~~~~~~i~~-~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  150 (457)
T d1xm9a1          74 RS--TTNKLETRR-QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNM  150 (457)
T ss_dssp             SC--HHHHHHHHH-TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC------
T ss_pred             CC--HHHHHHHHH-CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhh
Confidence            54  478888866 7999999999987767788888999999986420                                


Q ss_pred             ----------HHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHH
Q 046820          235 ----------ASALSVLDGICSTDCGRENANDKPLTMPVVVKKI  268 (350)
Q Consensus       235 ----------e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l  268 (350)
                                +.++.+|..++.+.+.+..+....++|+.++..+
T Consensus       151 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll  194 (457)
T d1xm9a1         151 SREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYV  194 (457)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHH
Confidence                      2577788888888888888877777778777654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=2.3e-06  Score=63.19  Aligned_cols=34  Identities=29%  Similarity=0.456  Sum_probs=29.0

Q ss_pred             hhcCCcccc-ccccccccCCcccCCCCCCcccCCccc
Q 046820           15 RKEQPARKE-TGASLIEKDPVTTTPRNGITYDRVNIL   50 (350)
Q Consensus        15 ~~~~~~~~~-~~~~eiM~DPVtl~~~TG~TYDR~sIe   50 (350)
                      +||+|+... -..+++|+|||+++  +|+||+|..|+
T Consensus         1 k~eiP~~l~CpIc~~l~~dPv~~~--cGhtfc~~ci~   35 (80)
T d2c2la2           1 KRDIPDYLCGKISFELMREPCITP--SGITYDRKDIE   35 (80)
T ss_dssp             CCCCCSTTBCTTTCSBCSSEEECS--SCCEEETTHHH
T ss_pred             CCCCCccccCcCcCchhhhhcccC--CcCeecHHHHH
Confidence            478887554 45679999999999  99999999998

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=1.1e-05  Score=61.87  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=25.2

Q ss_pred             cCCccc-cccccccccCCcccCCCCC-CcccCCccc
Q 046820           17 EQPARK-ETGASLIEKDPVTTTPRNG-ITYDRVNIL   50 (350)
Q Consensus        17 ~~~~~~-~~~~~eiM~DPVtl~~~TG-~TYDR~sIe   50 (350)
                      +.|+.. .--..+||+|||++.  +| +||||..|+
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~~~--~~~~ty~r~~I~   51 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVVLP--SSRVTVDRSTIA   51 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECT--TTCCEEEHHHHH
T ss_pred             CCcHHhCCcCchhHHHHHHhcc--cccchhhHHHHH
Confidence            455543 345689999999997  65 699999998

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.10  E-value=1.9e-05  Score=57.70  Aligned_cols=25  Identities=36%  Similarity=0.502  Sum_probs=23.0

Q ss_pred             ccccccccCCcccCCCCCCcccCCccc
Q 046820           24 TGASLIEKDPVTTTPRNGITYDRVNIL   50 (350)
Q Consensus        24 ~~~~eiM~DPVtl~~~TG~TYDR~sIe   50 (350)
                      --.+++|+|||++.  .|+||+|+.|+
T Consensus        12 pIc~~~m~dPV~~~--cgh~fc~~ci~   36 (78)
T d1t1ha_          12 PISLELMKDPVIVS--TGQTYERSSIQ   36 (78)
T ss_dssp             TTTSCCCSSEEEET--TTEEEEHHHHH
T ss_pred             cCcCchhhCceEcc--CCCcchHHHHH
Confidence            34689999999999  99999999998

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.00018  Score=49.08  Aligned_cols=23  Identities=9%  Similarity=0.304  Sum_probs=20.2

Q ss_pred             ccccccCCccc-CCCCCCcccCCccc
Q 046820           26 ASLIEKDPVTT-TPRNGITYDRVNIL   50 (350)
Q Consensus        26 ~~eiM~DPVtl-~~~TG~TYDR~sIe   50 (350)
                      ..++|+|||.+ .  +|+||||+.|+
T Consensus         6 c~~~~~~Pv~~~~--cGh~fc~~cI~   29 (56)
T d2baya1           6 SGKVPRRPVLSPK--SRTIFEKSLLE   29 (56)
T ss_dssp             TCSCCSSEEEETT--TTEEEEHHHHH
T ss_pred             CCchHHhcCccCC--CCCcccHHHHH
Confidence            46899999976 6  79999999987

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.69  Score=43.22  Aligned_cols=210  Identities=11%  Similarity=0.060  Sum_probs=112.0

Q ss_pred             ChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhCC-CChhhHhhcccCC
Q 046820           79 DQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFP-LEGEALTHLGSAS  157 (350)
Q Consensus        79 ~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls-~~~e~k~~i~~~~  157 (350)
                      +...+..|+..+..+....+..  . .+.-++|.+..+..   ++    ....+..|..++....+ .+++.+..     
T Consensus       100 ~~~Vr~~a~~~l~~i~~~~~~~--~-~~~~l~p~i~~L~~---~~----~~~~r~~a~~ll~~~~~~~~~~~~~~-----  164 (588)
T d1b3ua_         100 ETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAG---GD----WFTSRTSACGLFSVCYPRVSSAVKAE-----  164 (588)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHT---CS----SHHHHHHHGGGHHHHTTTSCHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHHHHhCCHH--H-HHHHHHHHHHHHhc---cc----chHHHHHHHHHHHHHHHHhhHHHHHH-----
Confidence            4445566777777776543221  1 12224554444443   11    23334444444432222 22233322     


Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHH
Q 046820          158 SMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASA  237 (350)
Q Consensus       158 ~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~a  237 (350)
                      .++.+..++...++..|..|+..+..++.... .+   .+ . ..+++.|..+++++ ++.....|+.+|..++..    
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~-~~---~~-~-~~l~~~l~~l~~d~-~~~vr~~a~~~l~~i~~~----  233 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE-LD---NV-K-SEIIPMFSNLASDE-QDSVRLLAVEACVNIAQL----  233 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC-HH---HH-H-HTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHH----
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc-HH---HH-H-HHHHHHHHHHhcCC-chhhHHHHHHHHHHhhcc----
Confidence            35667777777788888888888888875432 11   12 2 45677777777765 555556666666655421    


Q ss_pred             HHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhc
Q 046820          238 LSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVG  317 (350)
Q Consensus       238 L~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~  317 (350)
                             .. ++.....     .+|.+...+...+...++.++.+|..++...+.       +....-.++.+..+++ +
T Consensus       234 -------~~-~~~~~~~-----i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~-------~~~~~~l~~~l~~ll~-d  292 (588)
T d1b3ua_         234 -------LP-QEDLEAL-----VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-------EITKTDLVPAFQNLMK-D  292 (588)
T ss_dssp             -------SC-HHHHHHH-----THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-------HHHHHTHHHHHHHHHT-C
T ss_pred             -------CC-HHHHHHH-----HHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh-------hhhhhhhhHHHHHHHh-c
Confidence                   01 1222222     256666555556677788888888888764321       1222334555544444 4


Q ss_pred             CchHHHHHHHHHHHHHHh
Q 046820          318 CAERTKEKASEVLKLMNL  335 (350)
Q Consensus       318 ~t~~ak~kA~~LLk~l~~  335 (350)
                      ..+..|..|...|..+-.
T Consensus       293 ~~~~vr~~a~~~l~~~~~  310 (588)
T d1b3ua_         293 CEAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             SSHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHH
Confidence            466777777666654443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.31  Score=45.74  Aligned_cols=233  Identities=13%  Similarity=0.061  Sum_probs=124.7

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +..++..|++    .|...+..|++.|..++..=...|.   ...++|.|.+++.   +.     .+++-.++..|. ++
T Consensus        12 i~~l~~~l~~----~~~~~R~~a~~~l~~ia~~lg~~~~---~~~lip~l~~~~~---~~-----~ev~~~~~~~l~-~~   75 (588)
T d1b3ua_          12 IAVLIDELRN----EDVQLRLNSIKKLSTIALALGVERT---RSELLPFLTDTIY---DE-----DEVLLALAEQLG-TF   75 (588)
T ss_dssp             HHHHHHHTTC----SCHHHHHHHHHTHHHHHHHSCHHHH---HHTHHHHHHHTCC---CC-----HHHHHHHHHHHT-TC
T ss_pred             HHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhCcHhh---HHHHHHHHHHHhc---Cc-----HHHHHHHHHHHH-HH
Confidence            4556666665    4678888999999988875322221   1346888888774   22     344444445554 23


Q ss_pred             C--C-ChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHH
Q 046820          144 P--L-EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTAT  220 (350)
Q Consensus       144 s--~-~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~  220 (350)
                      .  + +++..     ...++.+..++...+...|.+|+..|..+....+    ...+ . .-++|.+.++..+. ....+
T Consensus        76 ~~~~~~~~~~-----~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~----~~~~-~-~~l~p~i~~L~~~~-~~~~r  143 (588)
T d1b3ua_          76 TTLVGGPEYV-----HCLLPPLESLATVEETVVRDKAVESLRAISHEHS----PSDL-E-AHFVPLVKRLAGGD-WFTSR  143 (588)
T ss_dssp             SGGGTSGGGG-----GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC----HHHH-H-HTHHHHHHHHHTCS-SHHHH
T ss_pred             HHHcCChhHH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCC----HHHH-H-HHHHHHHHHHhccc-chHHH
Confidence            2  0 11111     1245666666777788899999999999886532    1122 1 22334333444432 33333


Q ss_pred             HHHHHHHHHh-------------------hhh-----HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHH
Q 046820          221 KAALVVIYHT-------------------IAS-----SASALSVLDGICSTDCGRENANDKPLTMPVVVKKILRVSELAT  276 (350)
Q Consensus       221 k~Al~aL~~L-------------------~~~-----~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~  276 (350)
                      ..|...+..+                   +..     .+.+...+..++..-. ...+  ....+|.+...+....+..+
T Consensus       144 ~~a~~ll~~~~~~~~~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~-~~~~--~~~l~~~l~~l~~d~~~~vr  220 (588)
T d1b3ua_         144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE-LDNV--KSEIIPMFSNLASDEQDSVR  220 (588)
T ss_dssp             HHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC-HHHH--HHTHHHHHHHHHTCSCHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc-HHHH--HHHHHHHHHHHhcCCchhhH
Confidence            3333322222                   111     1355566666655321 1111  12334555555555667778


Q ss_pred             HHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          277 ELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       277 E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      +.|+.+|..++...+.   ..    ...-+++.+...++ +-+.+.|..+.+.|-.+..
T Consensus       221 ~~a~~~l~~i~~~~~~---~~----~~~~i~~~l~~~~~-D~~~~Vr~~~~~~l~~l~~  271 (588)
T d1b3ua_         221 LLAVEACVNIAQLLPQ---ED----LEALVMPTLRQAAE-DKSWRVRYMVADKFTELQK  271 (588)
T ss_dssp             TTHHHHHHHHHHHSCH---HH----HHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHhhccCCH---HH----HHHHHHHHHHHhcc-cccHHHHHHHHHhHHHHHH
Confidence            8899999888876531   11    11223444443333 4467777777665554443

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.27  E-value=0.033  Score=41.52  Aligned_cols=87  Identities=18%  Similarity=0.127  Sum_probs=65.2

Q ss_pred             CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcC
Q 046820          108 AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSS  187 (350)
Q Consensus       108 Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~  187 (350)
                      .+++.|+..|.   ++    +..++..|+.+|. .+.          ..++++.|+..|++.+...|..|+..|-.+   
T Consensus        22 ~~~~~L~~~l~---d~----~~~vR~~a~~~L~-~~~----------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i---   80 (111)
T d1te4a_          22 EAFEPLLESLS---NE----DWRIRGAAAWIIG-NFQ----------DERAVEPLIKLLEDDSGFVRSGAARSLEQI---   80 (111)
T ss_dssp             TTHHHHHHGGG---CS----CHHHHHHHHHHHG-GGC----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHc---CC----CHHHHHHHHHHHH-hcc----------hhhhHHHHHhhhccchhHHHHHHHHHHHHh---
Confidence            36788888775   33    4778888888886 332          234789999999999999999999888655   


Q ss_pred             CCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHH
Q 046820          188 DSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVI  227 (350)
Q Consensus       188 ~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL  227 (350)
                                |. +++++.|..+++++ ++...+.|+.+|
T Consensus        81 ----------~~-~~~~~~L~~ll~d~-~~~vr~~A~~aL  108 (111)
T d1te4a_          81 ----------GG-ERVRAAMEKLAETG-TGFARKVAVNYL  108 (111)
T ss_dssp             ----------CS-HHHHHHHHHHTTSC-CTHHHHHHHHHG
T ss_pred             ----------Cc-cchHHHHHHHHcCC-CHHHHHHHHHHH
Confidence                      23 57788888999877 666777777665

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.86  Score=37.62  Aligned_cols=130  Identities=10%  Similarity=-0.025  Sum_probs=76.4

Q ss_pred             hHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhh
Q 046820           63 EVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILL  142 (350)
Q Consensus        63 ~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~  142 (350)
                      ....++.-|.+    .++..+..|+..|..+..           ..++|.|+.++.   +.    +..++..|+.+|. .
T Consensus        20 ~~~~L~~~L~d----~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~---d~----~~~vr~~a~~aL~-~   76 (276)
T d1oyza_          20 NDDELFRLLDD----HNSLKRISSARVLQLRGG-----------QDAVRLAIEFCS---DK----NYIRRDIGAFILG-Q   76 (276)
T ss_dssp             CHHHHHHHTTC----SSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHT---CS----SHHHHHHHHHHHH-H
T ss_pred             CHHHHHHHhcC----CCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHc---CC----CHHHHHHHHHHHH-H
Confidence            44556666665    467778888887766531           346899999996   32    4778999999998 4


Q ss_pred             CCCChhhHhhcccCCcHHHH-HHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHH
Q 046820          143 FPLEGEALTHLGSASSMGCM-IWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATK  221 (350)
Q Consensus       143 Ls~~~e~k~~i~~~~~l~~L-v~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k  221 (350)
                      +........     ..++.+ ..+|+..+...|..|+..|..+....       .+ ..+.+++.|...+.+. ++.-..
T Consensus        77 l~~~~~~~~-----~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~-------~~-~~~~~~~~l~~~~~d~-~~~vr~  142 (276)
T d1oyza_          77 IKICKKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKN-------PI-YSPKIVEQSQITAFDK-STNVRR  142 (276)
T ss_dssp             SCCCTTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-------GG-GHHHHHHHHHHHTTCS-CHHHHH
T ss_pred             hcccccccc-----chHHHHHHHHhcCCChhHHHHHHHHHHHHcccc-------ch-hhHHHHHHHHHHhcCc-chHHHH
Confidence            542221111     112223 33455668888888888887775321       01 1245566666666554 344444


Q ss_pred             HHHHHHHH
Q 046820          222 AALVVIYH  229 (350)
Q Consensus       222 ~Al~aL~~  229 (350)
                      .|..++..
T Consensus       143 ~a~~~l~~  150 (276)
T d1oyza_         143 ATAFAISV  150 (276)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            44444443

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.56  Score=47.81  Aligned_cols=246  Identities=8%  Similarity=0.008  Sum_probs=140.3

Q ss_pred             chHHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHh
Q 046820           62 VEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLIL  141 (350)
Q Consensus        62 ~~v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~  141 (350)
                      .++..++.++.+.    |+..+.-|+..|...-+.+..+-..=....+++.|+.+|.   +    .+.+|+..|+.+|..
T Consensus         3 ~~~~~ll~k~~~~----D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~---D----~~~~Vq~~A~k~l~~   71 (1207)
T d1u6gc_           3 YHISNLLEKMTSS----DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---D----KNGEVQNLAVKCLGP   71 (1207)
T ss_dssp             HHHHHHHHHTTCS----SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---C----SSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcCCC----CHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHH
Confidence            4677888888764    6777888988887665433211111111246888888885   2    368899999988863


Q ss_pred             hCC-CChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC----chhHHhhhhchhhHHHHHHHHhcCCCC
Q 046820          142 LFP-LEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDS----DQRKVNVLSENEGAIEALFKLIEEPIS  216 (350)
Q Consensus       142 ~Ls-~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~----~~~~~~~Ig~~~g~i~~LV~lL~~~~~  216 (350)
                      +.. +.++..     ...++.|...|.+++.+.|..+...|..+...-.    .......+  ...+++.|...+.+..+
T Consensus        72 l~~~~~~~~~-----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~  144 (1207)
T d1u6gc_          72 LVSKVKEYQV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQED  144 (1207)
T ss_dssp             HHTTSCHHHH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH--HHHHHHHHHHHHSCCSC
T ss_pred             HHHhCcHhhH-----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH--HHHHHHHHHHhhcCCCC
Confidence            222 232221     1346667777777777778878877776643211    00111111  13455555555555556


Q ss_pred             hHHHHHHHHHHHHhhhh---------------------------HHHHHHHHHHHhCCHhhHHHhhcCCCChHHHHHHHh
Q 046820          217 PTATKAALVVIYHTIAS---------------------------SASALSVLDGICSTDCGRENANDKPLTMPVVVKKIL  269 (350)
Q Consensus       217 ~~a~k~Al~aL~~L~~~---------------------------~e~aL~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~  269 (350)
                      +.....|+.+|..+...                           ...|+..|..|+.+-. . ..  -...++.+++.+.
T Consensus       145 ~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~-~-~~--~~~~~~~ll~~l~  220 (1207)
T d1u6gc_         145 VSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG-N-IV--FVDLIEHLLSELS  220 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCC-H-HH--HHHHHHHHHHHHc
Confidence            66667777777766421                           1467788888876421 1 11  1234666776665


Q ss_pred             cc-ChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 046820          270 RV-SELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNL  335 (350)
Q Consensus       270 ~~-S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~  335 (350)
                      .. +...+..++..|..+|+..+......     -..+++.++..++.+ .+..|+.|...|..+-.
T Consensus       221 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~  281 (1207)
T d1u6gc_         221 KNDSMSTTRTYIQCIAAISRQAGHRIGEY-----LEKIIPLVVKFCNVD-DDELREYCIQAFESFVR  281 (1207)
T ss_dssp             HTCSSCSCTTHHHHHHHHHHHSSGGGTTS-----CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcchhhHHH-----HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHH
Confidence            43 34445567777878887654210000     123456555555544 56677777776666654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.41  E-value=0.056  Score=40.18  Aligned_cols=60  Identities=22%  Similarity=0.277  Sum_probs=45.0

Q ss_pred             CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 046820          156 ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHT  230 (350)
Q Consensus       156 ~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L  230 (350)
                      +..++.|+..|.+.+...|..|+.+|-++             +. +++++.|+.+|.++ ++.-...|..+|..+
T Consensus        21 ~~~~~~L~~~l~d~~~~vR~~a~~~L~~~-------------~~-~~~~~~L~~~l~d~-~~~VR~~a~~aL~~i   80 (111)
T d1te4a_          21 DEAFEPLLESLSNEDWRIRGAAAWIIGNF-------------QD-ERAVEPLIKLLEDD-SGFVRSGAARSLEQI   80 (111)
T ss_dssp             STTHHHHHHGGGCSCHHHHHHHHHHHGGG-------------CS-HHHHHHHHHHHHHC-CTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhc-------------ch-hhhHHHHHhhhccc-hhHHHHHHHHHHHHh
Confidence            35788999999999999999988876432             12 57889999999876 666666666666544

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=1.8  Score=35.49  Aligned_cols=154  Identities=10%  Similarity=0.030  Sum_probs=95.8

Q ss_pred             CchHHHHHHHHhccccccccchHHHHHHHHHHHhhCCCChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcC
Q 046820          108 AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSS  187 (350)
Q Consensus       108 Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~Ls~~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~  187 (350)
                      ...+.|..+|.   ++    ++.++..|+.+|.. +.          ...+++.++.+|+..+...|..|+..|..+...
T Consensus        19 ~~~~~L~~~L~---d~----~~~vR~~A~~~L~~-~~----------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~   80 (276)
T d1oyza_          19 LNDDELFRLLD---DH----NSLKRISSARVLQL-RG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC   80 (276)
T ss_dssp             SCHHHHHHHTT---CS----SHHHHHHHHHHHHH-HC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHhc---CC----CHHHHHHHHHHHHh-hC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence            45667888885   33    57899999998872 32          234789999999999999999999999888643


Q ss_pred             CCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhh----HHHHHHHHHHHhCC--HhhHHHhh------
Q 046820          188 DSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIAS----SASALSVLDGICST--DCGRENAN------  255 (350)
Q Consensus       188 ~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~----~e~aL~vL~~L~~~--~eGr~ai~------  255 (350)
                      ..   .      ....++.|...+-+..++.-...|+.+|.+++..    ....+..|......  ...|.+..      
T Consensus        81 ~~---~------~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          81 KK---C------EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI  151 (276)
T ss_dssp             TT---T------HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             cc---c------ccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHHHHHHHHHHhcCcchHHHHHHHHHHhhc
Confidence            21   1      1344555665554444778888899999888643    23344444444432  12221111      


Q ss_pred             cCCCChHHHHHHHhccChhHHHHHHHHHHHHcc
Q 046820          256 DKPLTMPVVVKKILRVSELATELSVSILWKLCM  288 (350)
Q Consensus       256 ~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~  288 (350)
                      .....++.+...+.......+..+..++..++.
T Consensus       152 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  184 (276)
T d1oyza_         152 NDKATIPLLINLLKDPNGDVRNWAAFAININKY  184 (276)
T ss_dssp             ---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHhcccccchhhhhHHHHHHhhhc
Confidence            245667777776655555555555555554443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.87  E-value=6.7  Score=36.96  Aligned_cols=244  Identities=11%  Similarity=-0.002  Sum_probs=127.9

Q ss_pred             chHHHHHHH-hHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHH
Q 046820           62 VEVLEINSK-IKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLI  140 (350)
Q Consensus        62 ~~v~~lv~~-l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~  140 (350)
                      .++..++.. +.+    .|...+.+|-..|..+.+++.        .|+++.|..++.+  .+   .+..++--|+-.|-
T Consensus         4 ~~~~~~L~~~~~s----~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~--~~---~~~~~r~~A~i~lk   66 (861)
T d2bpta1           4 AEFAQLLENSILS----PDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLID--EN---TKLEGRILAALTLK   66 (861)
T ss_dssp             HHHHHHHHHHHHC----SSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTC--TT---SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHc--CC---CCHHHHHHHHHHHH
Confidence            344455444 233    466778888888988876531        3578888888852  11   12444444544443


Q ss_pred             hhCC-CCh-hhH--------hhccc---CCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHH
Q 046820          141 LLFP-LEG-EAL--------THLGS---ASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEAL  207 (350)
Q Consensus       141 ~~Ls-~~~-e~k--------~~i~~---~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~L  207 (350)
                       |.- -.. ...        ..+..   ...-..++..|.+.+...|..++.++-.++..    +..  -+.-+++++.|
T Consensus        67 -n~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~----~~p--~~~wpeli~~L  139 (861)
T d2bpta1          67 -NELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADI----ELP--HGAWPELMKIM  139 (861)
T ss_dssp             -TTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----HGG--GTCCHHHHHHH
T ss_pred             -HHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH----hCC--cCchHHHHHHH
Confidence             331 111 100        01110   11245667777778888898888888888643    111  11237899999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHhhhhH--------------------------------HHHHHHHHHHhCCHhhHHHhh
Q 046820          208 FKLIEEPISPTATKAALVVIYHTIASS--------------------------------ASALSVLDGICSTDCGRENAN  255 (350)
Q Consensus       208 V~lL~~~~~~~a~k~Al~aL~~L~~~~--------------------------------e~aL~vL~~L~~~~eGr~ai~  255 (350)
                      +..+.+..+......|+.+|..+|...                                ..++..|..+..+-.......
T Consensus       140 ~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~  219 (861)
T d2bpta1         140 VDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE  219 (861)
T ss_dssp             HHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSH
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence            999987655556667888888876320                                134444444443211111000


Q ss_pred             -cCCCChHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046820          256 -DKPLTMPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMN  334 (350)
Q Consensus       256 -~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~  334 (350)
                       .....+..+...+....+..+..|..+|..++.....    .....+.. .+..++........+..+..|.+++..+.
T Consensus       220 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~----~~~~~l~~-~l~~l~~~~~~~~~~~v~~~~~~~l~~l~  294 (861)
T d2bpta1         220 GERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT----FMKPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTIC  294 (861)
T ss_dssp             HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG----GCHHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence             0011223333333334556677788888777765432    11111111 12233333333345677777776665443

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.80  E-value=7.6  Score=37.93  Aligned_cols=108  Identities=11%  Similarity=0.006  Sum_probs=63.7

Q ss_pred             HHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhcc--CchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           66 EINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDN--AAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        66 ~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~a--Gai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      .++..+.....+.+...+..|+..+..++....+   .+...  .++|.|+..+.   +    .++.++..++.+|. .+
T Consensus       395 ~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~---~~~~~l~~li~~l~~~l~---d----~~~~Vr~~a~~~l~-~~  463 (888)
T d1qbkb_         395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLS---D----KKALVRSITCWTLS-RY  463 (888)
T ss_dssp             HHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHH---HHTTTHHHHHHHHHHHTT---S----SCHHHHHHHHHHHH-HT
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHH---HhcccchhhhHHHHHhcc---C----CCHHHHHHHHHHHH-HH
Confidence            3444444333334556667788778777754322   22211  23555555553   2    25778888877776 23


Q ss_pred             C--C-ChhhHhhcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhc
Q 046820          144 P--L-EGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVS  186 (350)
Q Consensus       144 s--~-~~e~k~~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~  186 (350)
                      +  + .......  -...++.++..+...+...+..|+.+|.++..
T Consensus       464 ~~~~~~~~~~~~--~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~  507 (888)
T d1qbkb_         464 AHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEE  507 (888)
T ss_dssp             HHHHHSSCHHHH--TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhh--hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            2  0 0011111  13578888888888889999999999998874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.76  E-value=6.7  Score=33.86  Aligned_cols=250  Identities=9%  Similarity=0.011  Sum_probs=131.0

Q ss_pred             HHHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHHHHHHhhC
Q 046820           64 VLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEILSTLILLF  143 (350)
Q Consensus        64 v~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al~~L~~~L  143 (350)
                      +..++..+.+..  .+...+..++..+..+......+...-.-...++.++..+.   .+  +.+.+++..++.++...+
T Consensus       129 ~~~l~~~l~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~---~~--~~~~~v~~~a~~~l~~~~  201 (458)
T d1ibrb_         129 IPQLVANVTNPN--STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR---KE--EPSNNVKLAATNALLNSL  201 (458)
T ss_dssp             HHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHS---TT--CCCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhhc--chHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhc---cc--ccCHHHHHHHHHHHHHHH
Confidence            445555555432  23344445666666666544332211111234566666554   22  124667888888877433


Q ss_pred             CCChhhHh-hcccCCcHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHH
Q 046820          144 PLEGEALT-HLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKA  222 (350)
Q Consensus       144 s~~~e~k~-~i~~~~~l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~  222 (350)
                      ........ .......++.+...+...+.+.|..+...|..+..... ......+ . ....+-+...+.+. +..-...
T Consensus       202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~-~~~~~~l-~-~~~~~~~~~~~~~~-~~~~~~~  277 (458)
T d1ibrb_         202 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY-QYMETYM-G-PALFAITIEAMKSD-IDEVALQ  277 (458)
T ss_dssp             TTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGCTTTT-T-TTHHHHHHHHHHCS-SHHHHHH
T ss_pred             HhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhH-HHHHHHH-H-HHHHHHHHHHhccc-cHHHHHH
Confidence            32222111 11112345667777777889999999999999875421 1111222 1 22333334444433 4555666


Q ss_pred             HHHHHHHhhhhH-------------------------------------------------------HHHHHHHHHHhCC
Q 046820          223 ALVVIYHTIASS-------------------------------------------------------ASALSVLDGICST  247 (350)
Q Consensus       223 Al~aL~~L~~~~-------------------------------------------------------e~aL~vL~~L~~~  247 (350)
                      |+..+..++...                                                       ..+...+..++..
T Consensus       278 a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~  357 (458)
T d1ibrb_         278 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC  357 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHh
Confidence            776666664210                                                       1233344444331


Q ss_pred             HhhHHHhhcCCCChHHHHHHHh----ccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHH
Q 046820          248 DCGRENANDKPLTMPVVVKKIL----RVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTK  323 (350)
Q Consensus       248 ~eGr~ai~~~~~~v~~lv~~l~----~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak  323 (350)
                      -        ....++.++..+.    ..+...++.|+.+|..++.....  . ..... -...++.++..++ +..++.|
T Consensus       358 ~--------~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~--~-~~~~~-l~~i~~~l~~~l~-d~~~~VR  424 (458)
T d1ibrb_         358 C--------EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP--S-QLKPL-VIQAMPTLIELMK-DPSVVVR  424 (458)
T ss_dssp             T--------TTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT--T-TTCTT-TTTHHHHHHHGGG-CSCHHHH
T ss_pred             c--------cHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCH--h-HHHHH-HHHHHHHHHHHhC-CCCHHHH
Confidence            1        1123444444443    34457788899999888864321  0 11111 1235666666666 4478999


Q ss_pred             HHHHHHHHHHHhcc
Q 046820          324 EKASEVLKLMNLHR  337 (350)
Q Consensus       324 ~kA~~LLk~l~~~~  337 (350)
                      ..|...|.-+..+.
T Consensus       425 ~~a~~~l~~i~~~~  438 (458)
T d1ibrb_         425 DTAAWTVGRICELL  438 (458)
T ss_dssp             HHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999887776644

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=4.2  Score=39.90  Aligned_cols=113  Identities=12%  Similarity=0.048  Sum_probs=74.9

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHHH
Q 046820          160 GCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASALS  239 (350)
Q Consensus       160 ~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL~  239 (350)
                      +.+...+.+.++..|+.|+.+|-.++.... +.....   .+.+++.|+..++++ ++.-+..|..+|..++.+.     
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~-~~~~~~---l~~li~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~~-----  467 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPY---LPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWV-----  467 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTSH-HHHTTT---HHHHHHHHHHHTTSS-CHHHHHHHHHHHHHTHHHH-----
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhHH-HHhccc---chhhhHHHHHhccCC-CHHHHHHHHHHHHHHHHHh-----
Confidence            444445556689999999988888875421 122222   367899999999876 6666666677776665421     


Q ss_pred             HHHHHhCCHhhHHHhhcCCCChHHHHHHHhccChhHHHHHHHHHHHHccccc
Q 046820          240 VLDGICSTDCGRENANDKPLTMPVVVKKILRVSELATELSVSILWKLCMNEK  291 (350)
Q Consensus       240 vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~  291 (350)
                           .  ++.....  ....++.+++.+...++..++.|..+|..++...+
T Consensus       468 -----~--~~~~~~~--~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~  510 (888)
T d1qbkb_         468 -----V--SQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC  510 (888)
T ss_dssp             -----H--SSCHHHH--TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             -----h--hhhhhhh--hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence                 0  1111222  24567888888888888889999999998887544

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.10  E-value=9.7  Score=36.00  Aligned_cols=172  Identities=12%  Similarity=0.052  Sum_probs=97.6

Q ss_pred             CcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCC-ChHHHHHHHHHHHHhhhh-
Q 046820          157 SSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPI-SPTATKAALVVIYHTIAS-  233 (350)
Q Consensus       157 ~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~-~~~a~k~Al~aL~~L~~~-  233 (350)
                      ..++.+...|++. +.+.|..|..++-.+..... .....-   ...+++.|++.+.++. +...+..++.++..++.. 
T Consensus       649 ~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~---~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~  724 (876)
T d1qgra_         649 AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPF---CDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI  724 (876)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHH---HHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhH-Hhhhhh---HHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHH
Confidence            3677888888766 57889988888877763211 122222   2678899999998653 445556778888776532 


Q ss_pred             -------HHHHHHHHHHHhCC--Hhh-----------HHHhh-----------c-----------CCCChHHHHHHHh--
Q 046820          234 -------SASALSVLDGICST--DCG-----------RENAN-----------D-----------KPLTMPVVVKKIL--  269 (350)
Q Consensus       234 -------~e~aL~vL~~L~~~--~eG-----------r~ai~-----------~-----------~~~~v~~lv~~l~--  269 (350)
                             -+..+..|...+..  ..+           +..++           .           -..-++.++..+.  
T Consensus       725 ~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~  804 (876)
T d1qgra_         725 GGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHI  804 (876)
T ss_dssp             GGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH
Confidence                   12222222221110  000           00000           0           0011233433332  


Q ss_pred             -c---cChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHH-HHhcCchHHHHHHHHHHHHHHhc
Q 046820          270 -R---VSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVL-LQVGCAERTKEKASEVLKLMNLH  336 (350)
Q Consensus       270 -~---~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~l-lq~~~t~~ak~kA~~LLk~l~~~  336 (350)
                       .   .+......|+.+|..++...|+   ...........+..+|.. .++. .+..|..|....+.+++.
T Consensus       805 ~~~~~~~~~~~~~~~~~i~~l~~~~g~---~~~~~~~~~~~v~~ll~~~~~s~-~~~~~~~a~~~~~~~~~~  872 (876)
T d1qgra_         805 AGDEDHTDGVVACAAGLIGDLCTAFGK---DVLKLVEARPMIHELLTEGRRSK-TNKAKTLARWATKELRKL  872 (876)
T ss_dssp             HTCSCCCHHHHHHHHHHHHHHHHHHCT---HHHHHHHTSHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHhcChHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence             1   2345567789999999886652   344444455666666654 4444 688999999988888764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.76  E-value=1.9  Score=37.75  Aligned_cols=92  Identities=11%  Similarity=0.131  Sum_probs=59.1

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhHHHHH
Q 046820          159 MGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASAL  238 (350)
Q Consensus       159 l~~Lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~a~k~Al~aL~~L~~~~e~aL  238 (350)
                      ++.+...|.+.++..|..|..+|-.++........+..+   +.+++.|+..++++ ++.-...|+.+|..++.+-    
T Consensus       367 ~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l---~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~~~----  438 (458)
T d1ibrb_         367 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV---IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELL----  438 (458)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT---TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHG----
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH---HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh----
Confidence            445556667778999999998888887532101223333   67999999999987 6666666666666664311    


Q ss_pred             HHHHHHhCCHhhHHHhhcCCCChHHHHHHHhcc
Q 046820          239 SVLDGICSTDCGRENANDKPLTMPVVVKKILRV  271 (350)
Q Consensus       239 ~vL~~L~~~~eGr~ai~~~~~~v~~lv~~l~~~  271 (350)
                                 +..  ..+..-+++++..|..|
T Consensus       439 -----------~~~--~~~~~~l~~ll~~ll~g  458 (458)
T d1ibrb_         439 -----------PEA--AINDVYLAPLLQCLIEG  458 (458)
T ss_dssp             -----------GGG--CCSTTTHHHHHHHHHCC
T ss_pred             -----------hcc--cchhhHHHHHHHHHhCc
Confidence                       111  12445578888877654

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.98  E-value=3.4  Score=32.08  Aligned_cols=78  Identities=13%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             hHHHHHHHhccChhHHHHHHHHHHHHccccccchHHHHHHHHhhchHHHHHHHHHhcCchHHHHHHHHHHHHHHhccCCC
Q 046820          261 MPVVVKKILRVSELATELSVSILWKLCMNEKREEKTAFVEALQVGAFQKLLVLLQVGCAERTKEKASEVLKLMNLHRDRL  340 (350)
Q Consensus       261 v~~lv~~l~~~S~~~~E~Av~iL~~Lc~~~~~~~~~~~~~~~~~G~v~~LL~llq~~~t~~ak~kA~~LLk~l~~~~~~~  340 (350)
                      +.+|.++|...++...-+|+.+|=.+..++|   .....++.....+..|..++........|+|+.++++......++.
T Consensus        44 ~ral~krl~~~n~~v~l~aL~LLd~~vkNcG---~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (145)
T d1dvpa1          44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCG---APVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS  120 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH---HHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHccc---hHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            5667777777788888999999999888876   3455666666677777666766655689999888877776644443


Q ss_pred             C
Q 046820          341 E  341 (350)
Q Consensus       341 ~  341 (350)
                      |
T Consensus       121 ~  121 (145)
T d1dvpa1         121 D  121 (145)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.96  E-value=14  Score=36.83  Aligned_cols=210  Identities=12%  Similarity=0.133  Sum_probs=110.3

Q ss_pred             HHHHHHhHhhhccCChhHHHHHHHHHHHHHhcCccccchhhccCchHHHHHHHHhccccccccchHHHHHHH---HHHHh
Q 046820           65 LEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVSVLEEIL---STLIL  141 (350)
Q Consensus        65 ~~lv~~l~~~~~~~~~~~~~~Al~~L~~Lak~s~~nR~~i~~aGai~~Lv~lL~~~~~~~~~~~~~~~e~Al---~~L~~  141 (350)
                      ..++..+-......+++.|..|++-|..++..-..+.   . ..+++.|...+.   ++    +...+..+.   ..+..
T Consensus        44 ~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~---~-~~l~~~L~~~l~---~~----~~~~r~~~~~~L~~i~~  112 (1207)
T d1u6gc_          44 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ---V-ETIVDTLCTNML---SD----KEQLRDISSIGLKTVIG  112 (1207)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH---H-HHHHHHHHHHTT---CS----SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh---H-HHHHHHHHHHhc---CC----chhhhHHHHHHHHHHHH
Confidence            3344444333222456777778888888876543321   1 123444444442   11    123333333   33332


Q ss_pred             hCCCChhhHhhc--ccCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCCchhHHhhhhchhhHHHHHHHHhcCCCChH
Q 046820          142 LFPLEGEALTHL--GSASSMGCMIWFLNSG-DLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPT  218 (350)
Q Consensus       142 ~Ls~~~e~k~~i--~~~~~l~~Lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~~~Ig~~~g~i~~LV~lL~~~~~~~  218 (350)
                      .++.........  .-...++.+...+.+. +...|..|..+|..+.....  ..  .......+++.|+..+.++ ++.
T Consensus       113 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g--~~--l~~~~~~il~~l~~~l~~~-~~~  187 (1207)
T d1u6gc_         113 ELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG--GL--LVNFHPSILTCLLPQLTSP-RLA  187 (1207)
T ss_dssp             HCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC--SS--CTTTHHHHHHHHGGGGGCS-SHH
T ss_pred             hcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh--Hh--hHHHHHHHHHHHHHHhCCC-CHH
Confidence            332111111000  0112344444444444 67888889888888864321  11  1112356778888888766 556


Q ss_pred             HHHHHHHHHHHhhhhH-------------------------HHHHHHHHHHhCCHhhHHHhhcC-CCChHHHHHHHhccC
Q 046820          219 ATKAALVVIYHTIASS-------------------------ASALSVLDGICSTDCGRENANDK-PLTMPVVVKKILRVS  272 (350)
Q Consensus       219 a~k~Al~aL~~L~~~~-------------------------e~aL~vL~~L~~~~eGr~ai~~~-~~~v~~lv~~l~~~S  272 (350)
                      -.+.|..+|..++...                         ..++..|..|+... |. .+..+ ...+|.+++.+....
T Consensus       188 vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~-~~-~~~~~l~~i~~~l~~~l~~~~  265 (1207)
T d1u6gc_         188 VRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA-GH-RIGEYLEKIIPLVVKFCNVDD  265 (1207)
T ss_dssp             HHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS-SG-GGTTSCTTHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc-ch-hhHHHHHHHHHHHHHHhcCcc
Confidence            6788888888885320                         23455555555421 11 12222 345677777776667


Q ss_pred             hhHHHHHHHHHHHHcccccc
Q 046820          273 ELATELSVSILWKLCMNEKR  292 (350)
Q Consensus       273 ~~~~E~Av~iL~~Lc~~~~~  292 (350)
                      +..+|.|..+|..++...+.
T Consensus       266 ~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         266 DELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             TTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHhChh
Confidence            78889999999888776543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.69  E-value=0.35  Score=35.36  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=20.7

Q ss_pred             cccccccCCccc-CCCCCCcccCCccc
Q 046820           25 GASLIEKDPVTT-TPRNGITYDRVNIL   50 (350)
Q Consensus        25 ~~~eiM~DPVtl-~~~TG~TYDR~sIe   50 (350)
                      --.++|+|||++ .  -||||-+..|+
T Consensus        27 IC~~~~~~pv~~~~--CgH~fC~~Ci~   51 (97)
T d1jm7b_          27 RCTNILREPVCLGG--CEHIFCSNCVS   51 (97)
T ss_dssp             SSCSCCSSCBCCCS--SSCCBCTTTGG
T ss_pred             cCCchhhcCceeCC--CCCchhHHHHH
Confidence            347899999987 5  69999999997